Query psy3301
Match_columns 608
No_of_seqs 583 out of 4640
Neff 8.8
Searched_HMMs 46136
Date Fri Aug 16 21:31:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3301.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3301hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1707|consensus 100.0 1E-113 2E-118 882.3 49.0 576 5-607 4-625 (625)
2 KOG0092|consensus 100.0 3E-28 6.4E-33 219.2 11.4 150 8-159 3-171 (200)
3 KOG0084|consensus 100.0 5.6E-28 1.2E-32 218.3 13.0 151 7-159 6-176 (205)
4 PRK03003 GTP-binding protein D 99.9 3.1E-26 6.8E-31 248.0 23.1 115 8-128 36-159 (472)
5 KOG0094|consensus 99.9 6.1E-27 1.3E-31 210.3 12.4 150 9-159 21-189 (221)
6 KOG0078|consensus 99.9 1.8E-26 3.9E-31 212.0 15.1 149 6-156 8-175 (207)
7 PF08356 EF_assoc_2: EF hand a 99.9 4.6E-27 9.9E-32 187.6 7.4 88 207-295 2-89 (89)
8 cd04133 Rop_like Rop subfamily 99.9 7.9E-26 1.7E-30 212.3 15.1 145 11-157 2-175 (176)
9 KOG0080|consensus 99.9 3.7E-26 8.1E-31 197.9 10.3 149 9-158 10-177 (209)
10 cd01875 RhoG RhoG subfamily. 99.9 1.4E-25 3.1E-30 214.3 15.5 148 9-158 2-180 (191)
11 KOG0098|consensus 99.9 7.6E-26 1.7E-30 201.5 12.4 146 9-156 5-169 (216)
12 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.9 1.7E-25 3.6E-30 211.5 15.5 146 8-155 3-180 (182)
13 cd04121 Rab40 Rab40 subfamily. 99.9 3.5E-25 7.5E-30 210.3 16.9 146 8-156 4-168 (189)
14 cd04120 Rab12 Rab12 subfamily. 99.9 3.7E-25 8E-30 212.1 16.1 144 11-156 1-164 (202)
15 KOG0079|consensus 99.9 7.3E-26 1.6E-30 193.2 8.8 147 7-156 5-170 (198)
16 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 8.1E-25 1.8E-29 213.3 16.1 149 9-159 12-192 (232)
17 cd04131 Rnd Rnd subfamily. Th 99.9 5.5E-25 1.2E-29 207.5 14.4 144 10-155 1-176 (178)
18 cd01874 Cdc42 Cdc42 subfamily. 99.9 6.7E-25 1.5E-29 206.6 14.7 143 10-154 1-174 (175)
19 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 1.4E-24 2.9E-29 210.7 16.6 149 11-161 2-182 (222)
20 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 1.7E-24 3.7E-29 203.3 15.9 146 10-156 2-165 (172)
21 KOG0394|consensus 99.9 2.8E-25 6.2E-30 197.6 9.8 152 7-159 6-182 (210)
22 KOG0084|consensus 99.9 1.2E-25 2.7E-30 203.1 7.5 147 406-554 6-175 (205)
23 KOG0087|consensus 99.9 1.1E-24 2.5E-29 198.8 11.5 147 8-156 12-177 (222)
24 cd04122 Rab14 Rab14 subfamily. 99.9 4.2E-24 9.1E-29 199.5 15.7 144 10-155 2-164 (166)
25 cd01893 Miro1 Miro1 subfamily. 99.9 6.4E-24 1.4E-28 198.3 16.5 145 11-157 1-166 (166)
26 cd04134 Rho3 Rho3 subfamily. 99.9 3.3E-24 7.3E-29 204.5 14.4 148 11-160 1-179 (189)
27 cd01871 Rac1_like Rac1-like su 99.9 4.1E-24 9E-29 201.0 14.5 142 10-153 1-173 (174)
28 cd04136 Rap_like Rap-like subf 99.9 9.3E-24 2E-28 196.2 16.3 144 10-154 1-162 (163)
29 TIGR03594 GTPase_EngA ribosome 99.9 4.7E-23 1E-27 222.1 24.1 111 12-129 1-121 (429)
30 KOG0078|consensus 99.9 4.5E-25 9.8E-30 202.8 7.1 147 405-554 8-177 (207)
31 KOG0086|consensus 99.9 3.2E-24 7E-29 184.1 11.7 153 3-157 2-173 (214)
32 PLN03071 GTP-binding nuclear p 99.9 1.8E-23 3.8E-28 203.9 18.5 146 8-156 11-173 (219)
33 cd04175 Rap1 Rap1 subgroup. T 99.9 1.4E-23 3E-28 195.5 16.7 144 10-154 1-162 (164)
34 KOG0095|consensus 99.9 3.9E-24 8.4E-29 182.8 11.1 145 9-155 6-169 (213)
35 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 1.2E-23 2.7E-28 202.7 15.8 146 11-157 1-170 (201)
36 cd04138 H_N_K_Ras_like H-Ras/N 99.9 2.7E-23 5.9E-28 192.6 16.8 144 10-154 1-161 (162)
37 cd01867 Rab8_Rab10_Rab13_like 99.9 2.2E-23 4.8E-28 194.8 16.0 145 10-156 3-166 (167)
38 cd04103 Centaurin_gamma Centau 99.9 1.6E-23 3.5E-28 193.6 14.8 137 11-153 1-157 (158)
39 cd04176 Rap2 Rap2 subgroup. T 99.9 2.6E-23 5.7E-28 193.4 16.2 144 10-154 1-162 (163)
40 cd04127 Rab27A Rab27a subfamil 99.9 1.8E-23 3.9E-28 197.9 15.2 147 9-156 3-178 (180)
41 smart00173 RAS Ras subfamily o 99.9 3.9E-23 8.4E-28 192.4 17.1 144 11-155 1-162 (164)
42 cd04117 Rab15 Rab15 subfamily. 99.9 2.1E-23 4.6E-28 193.7 15.2 141 11-153 1-160 (161)
43 cd04128 Spg1 Spg1p. Spg1p (se 99.9 2.3E-23 4.9E-28 197.3 15.2 143 11-156 1-167 (182)
44 cd04144 Ras2 Ras2 subfamily. 99.9 3.4E-23 7.3E-28 197.8 16.4 145 12-157 1-165 (190)
45 PTZ00369 Ras-like protein; Pro 99.9 3.7E-23 8.1E-28 197.4 16.4 148 8-156 3-168 (189)
46 cd04119 RJL RJL (RabJ-Like) su 99.9 3.2E-23 7E-28 193.3 15.7 144 11-155 1-167 (168)
47 cd04145 M_R_Ras_like M-Ras/R-R 99.9 5.2E-23 1.1E-27 191.4 17.0 144 10-154 2-163 (164)
48 KOG0094|consensus 99.9 3E-24 6.5E-29 193.1 8.1 144 408-554 21-188 (221)
49 cd00877 Ran Ran (Ras-related n 99.9 2.5E-23 5.4E-28 194.2 14.8 143 11-156 1-160 (166)
50 smart00174 RHO Rho (Ras homolo 99.9 1.8E-23 3.8E-28 196.7 13.8 142 13-156 1-173 (174)
51 cd04140 ARHI_like ARHI subfami 99.9 5E-23 1.1E-27 192.0 16.7 142 10-152 1-162 (165)
52 cd04124 RabL2 RabL2 subfamily. 99.9 3E-23 6.5E-28 192.7 14.7 143 11-156 1-159 (161)
53 KOG0098|consensus 99.9 2.2E-24 4.8E-29 192.2 6.5 143 407-553 4-170 (216)
54 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 4.2E-23 9.2E-28 193.4 15.4 143 12-155 2-165 (170)
55 PRK00093 GTP-binding protein D 99.9 1.1E-22 2.4E-27 219.6 20.7 111 11-128 2-122 (435)
56 cd01865 Rab3 Rab3 subfamily. 99.9 5.1E-23 1.1E-27 191.9 15.4 143 11-155 2-163 (165)
57 KOG0093|consensus 99.9 4.2E-23 9.1E-28 176.3 13.1 145 10-156 21-184 (193)
58 cd04132 Rho4_like Rho4-like su 99.9 4.6E-23 9.9E-28 196.4 14.9 145 11-157 1-169 (187)
59 cd04109 Rab28 Rab28 subfamily. 99.9 6.5E-23 1.4E-27 199.7 16.2 146 11-157 1-168 (215)
60 PRK09518 bifunctional cytidyla 99.9 1.9E-22 4.1E-27 228.5 22.3 113 10-128 275-396 (712)
61 KOG0091|consensus 99.9 5.2E-23 1.1E-27 178.9 13.3 148 8-156 6-174 (213)
62 cd01864 Rab19 Rab19 subfamily. 99.9 5.4E-23 1.2E-27 191.7 14.4 143 9-153 2-164 (165)
63 cd04110 Rab35 Rab35 subfamily. 99.9 1.1E-22 2.4E-27 195.7 16.6 146 9-157 5-169 (199)
64 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 1E-22 2.2E-27 190.1 15.8 144 10-155 2-164 (166)
65 smart00176 RAN Ran (Ras-relate 99.9 6.3E-23 1.4E-27 196.4 14.2 139 16-157 1-156 (200)
66 cd01873 RhoBTB RhoBTB subfamil 99.9 6.4E-23 1.4E-27 195.9 14.2 140 10-153 2-194 (195)
67 cd04111 Rab39 Rab39 subfamily. 99.9 1.4E-22 3E-27 196.6 16.2 146 10-156 2-167 (211)
68 cd04126 Rab20 Rab20 subfamily. 99.9 1.6E-22 3.4E-27 196.2 16.6 141 11-156 1-191 (220)
69 PF00071 Ras: Ras family; Int 99.9 8.3E-23 1.8E-27 189.7 14.1 142 12-155 1-161 (162)
70 cd04149 Arf6 Arf6 subfamily. 99.9 1.2E-22 2.5E-27 190.1 15.0 141 8-152 7-167 (168)
71 KOG0092|consensus 99.9 1.1E-23 2.4E-28 189.8 7.6 144 408-554 4-170 (200)
72 cd04113 Rab4 Rab4 subfamily. 99.9 1.2E-22 2.7E-27 188.4 14.7 142 11-154 1-161 (161)
73 cd01868 Rab11_like Rab11-like. 99.9 1.7E-22 3.8E-27 188.2 15.7 143 10-154 3-164 (165)
74 cd04106 Rab23_lke Rab23-like s 99.9 1.1E-22 2.5E-27 188.7 13.9 140 11-153 1-161 (162)
75 cd04143 Rhes_like Rhes_like su 99.9 2.5E-22 5.4E-27 198.7 16.9 149 11-160 1-176 (247)
76 cd04135 Tc10 TC10 subfamily. 99.9 1E-22 2.2E-27 191.6 13.5 142 11-154 1-173 (174)
77 cd04116 Rab9 Rab9 subfamily. 99.9 1.8E-22 3.8E-27 189.2 15.0 144 9-153 4-169 (170)
78 KOG0393|consensus 99.9 7.7E-24 1.7E-28 195.9 5.6 149 9-159 3-183 (198)
79 cd04142 RRP22 RRP22 subfamily. 99.9 2.1E-22 4.5E-27 193.1 15.4 148 11-159 1-178 (198)
80 KOG0088|consensus 99.9 1.1E-23 2.4E-28 181.9 5.9 146 9-156 12-176 (218)
81 cd04112 Rab26 Rab26 subfamily. 99.9 2.1E-22 4.6E-27 192.5 15.4 145 11-157 1-165 (191)
82 PLN00223 ADP-ribosylation fact 99.9 2.7E-22 5.8E-27 189.8 15.8 145 8-156 15-179 (181)
83 cd01866 Rab2 Rab2 subfamily. 99.9 3E-22 6.4E-27 187.4 16.0 144 10-155 4-166 (168)
84 smart00177 ARF ARF-like small 99.9 3E-22 6.6E-27 188.6 16.1 143 8-154 11-173 (175)
85 cd04177 RSR1 RSR1 subgroup. R 99.9 4E-22 8.6E-27 186.5 16.6 146 10-156 1-165 (168)
86 cd04150 Arf1_5_like Arf1-Arf5- 99.9 2.6E-22 5.7E-27 185.9 15.1 138 11-152 1-158 (159)
87 cd04125 RabA_like RabA-like su 99.9 2.8E-22 6.1E-27 191.2 15.6 145 11-157 1-164 (188)
88 KOG0087|consensus 99.9 2.7E-23 6E-28 189.8 8.1 148 405-555 10-180 (222)
89 cd04130 Wrch_1 Wrch-1 subfamil 99.9 1.3E-22 2.9E-27 190.7 13.0 140 11-152 1-171 (173)
90 cd01870 RhoA_like RhoA-like su 99.9 2E-22 4.4E-27 189.7 14.1 142 11-154 2-174 (175)
91 COG1160 Predicted GTPases [Gen 99.9 2.3E-21 5E-26 198.4 22.8 133 11-149 4-159 (444)
92 cd04101 RabL4 RabL4 (Rab-like4 99.9 3.5E-22 7.7E-27 185.9 15.2 141 11-154 1-163 (164)
93 PLN03110 Rab GTPase; Provision 99.9 3.8E-22 8.2E-27 194.3 16.0 147 9-157 11-176 (216)
94 cd04148 RGK RGK subfamily. Th 99.9 1E-21 2.3E-26 191.7 18.5 142 11-155 1-163 (221)
95 cd01892 Miro2 Miro2 subfamily. 99.9 4.7E-22 1E-26 186.2 15.3 145 8-156 2-167 (169)
96 PTZ00133 ADP-ribosylation fact 99.9 6.1E-22 1.3E-26 187.6 15.9 145 8-156 15-179 (182)
97 cd01861 Rab6 Rab6 subfamily. 99.9 4.6E-22 9.9E-27 184.5 14.8 141 11-153 1-160 (161)
98 cd04146 RERG_RasL11_like RERG/ 99.9 4.5E-22 9.7E-27 185.5 14.7 143 12-155 1-164 (165)
99 cd04115 Rab33B_Rab33A Rab33B/R 99.9 4.3E-22 9.4E-27 186.7 14.7 144 10-154 2-168 (170)
100 PLN03118 Rab family protein; P 99.9 9.3E-22 2E-26 191.1 17.1 150 7-157 11-179 (211)
101 KOG0080|consensus 99.9 3.1E-23 6.7E-28 179.8 5.7 144 407-553 9-176 (209)
102 cd04118 Rab24 Rab24 subfamily. 99.9 8.8E-22 1.9E-26 188.6 15.4 143 11-156 1-167 (193)
103 cd01860 Rab5_related Rab5-rela 99.9 1.2E-21 2.5E-26 182.1 15.7 143 10-154 1-162 (163)
104 cd04158 ARD1 ARD1 subfamily. 99.9 1.4E-21 3.1E-26 183.0 15.8 141 12-156 1-162 (169)
105 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 1.7E-21 3.8E-26 181.4 14.9 135 13-152 2-163 (164)
106 PLN03108 Rab family protein; P 99.9 2.4E-21 5.1E-26 187.9 16.0 146 9-156 5-169 (210)
107 KOG0394|consensus 99.9 2.4E-22 5.2E-27 179.0 8.2 146 407-554 7-181 (210)
108 cd01863 Rab18 Rab18 subfamily. 99.9 2.5E-21 5.5E-26 179.5 15.6 142 11-153 1-160 (161)
109 smart00175 RAB Rab subfamily o 99.9 2.1E-21 4.5E-26 180.5 15.0 143 11-155 1-162 (164)
110 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 2.7E-21 5.8E-26 183.5 15.4 147 9-156 2-171 (183)
111 KOG0086|consensus 99.9 1E-22 2.3E-27 174.8 4.6 145 405-553 5-173 (214)
112 cd04123 Rab21 Rab21 subfamily. 99.9 3.6E-21 7.8E-26 178.3 15.3 142 11-154 1-161 (162)
113 PTZ00132 GTP-binding nuclear p 99.9 1.3E-20 2.8E-25 183.7 19.8 176 6-184 5-203 (215)
114 cd04154 Arl2 Arl2 subfamily. 99.9 4.4E-21 9.5E-26 180.4 15.4 141 8-152 12-172 (173)
115 cd04139 RalA_RalB RalA/RalB su 99.9 6.7E-21 1.5E-25 177.0 16.4 144 11-155 1-162 (164)
116 cd04114 Rab30 Rab30 subfamily. 99.9 5.5E-21 1.2E-25 178.8 15.8 145 8-154 5-168 (169)
117 cd01862 Rab7 Rab7 subfamily. 99.9 5.3E-21 1.1E-25 179.3 15.2 145 11-156 1-168 (172)
118 cd00157 Rho Rho (Ras homology) 99.9 2.7E-21 5.9E-26 181.1 13.0 140 11-152 1-170 (171)
119 cd04129 Rho2 Rho2 subfamily. 99.9 4.4E-21 9.6E-26 182.7 14.4 144 11-156 2-174 (187)
120 PF08355 EF_assoc_1: EF hand a 99.9 4.8E-22 1E-26 154.8 6.0 75 331-405 1-76 (76)
121 KOG0395|consensus 99.9 4.4E-21 9.6E-26 182.1 13.5 150 9-159 2-169 (196)
122 KOG0097|consensus 99.9 2.8E-21 6E-26 163.8 10.5 146 9-156 10-174 (215)
123 cd04157 Arl6 Arl6 subfamily. 99.9 7E-21 1.5E-25 176.6 14.3 138 12-152 1-161 (162)
124 cd04147 Ras_dva Ras-dva subfam 99.9 1.1E-20 2.4E-25 181.7 16.0 143 12-155 1-163 (198)
125 KOG0079|consensus 99.9 7.5E-23 1.6E-27 174.9 0.6 144 407-553 6-171 (198)
126 cd04151 Arl1 Arl1 subfamily. 99.9 9.8E-21 2.1E-25 175.2 14.7 137 12-152 1-157 (158)
127 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 1.4E-20 3E-25 177.1 15.6 140 9-152 14-173 (174)
128 KOG0091|consensus 99.8 8.3E-22 1.8E-26 171.4 5.5 145 406-553 5-175 (213)
129 cd04161 Arl2l1_Arl13_like Arl2 99.8 1.7E-20 3.6E-25 175.3 14.5 137 12-152 1-166 (167)
130 cd04156 ARLTS1 ARLTS1 subfamil 99.8 2.3E-20 4.9E-25 173.0 15.1 138 12-152 1-159 (160)
131 cd04137 RheB Rheb (Ras Homolog 99.8 3.8E-20 8.2E-25 175.1 16.1 146 11-157 2-165 (180)
132 cd01892 Miro2 Miro2 subfamily. 99.8 1.4E-20 3.1E-25 176.1 12.7 147 406-554 1-169 (169)
133 cd00876 Ras Ras family. The R 99.8 3.5E-20 7.5E-25 171.3 15.2 142 12-154 1-160 (160)
134 cd04133 Rop_like Rop subfamily 99.8 5.3E-21 1.2E-25 179.6 9.7 141 410-553 2-175 (176)
135 cd04121 Rab40 Rab40 subfamily. 99.8 8.3E-21 1.8E-25 180.3 8.9 144 408-554 5-170 (189)
136 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.8 7.2E-21 1.6E-25 179.8 8.1 142 408-552 4-181 (182)
137 KOG0093|consensus 99.8 4.4E-21 9.6E-26 164.0 5.9 145 405-553 17-185 (193)
138 smart00178 SAR Sar1p-like memb 99.8 8.2E-20 1.8E-24 173.4 15.2 142 8-153 15-183 (184)
139 cd00878 Arf_Arl Arf (ADP-ribos 99.8 1.1E-19 2.3E-24 168.1 15.3 137 12-152 1-157 (158)
140 cd04102 RabL3 RabL3 (Rab-like3 99.8 4.7E-20 1E-24 176.5 13.0 119 11-130 1-144 (202)
141 cd00879 Sar1 Sar1 subfamily. 99.8 9.5E-20 2.1E-24 174.0 15.1 143 7-153 16-189 (190)
142 cd00154 Rab Rab family. Rab G 99.8 8.3E-20 1.8E-24 168.0 14.2 139 11-151 1-158 (159)
143 cd04160 Arfrp1 Arfrp1 subfamil 99.8 8.1E-20 1.8E-24 170.5 14.0 138 12-152 1-166 (167)
144 cd04131 Rnd Rnd subfamily. Th 99.8 1.1E-20 2.5E-25 178.0 8.1 139 410-551 2-176 (178)
145 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.8 1.2E-20 2.6E-25 184.1 8.4 142 409-553 13-190 (232)
146 cd01875 RhoG RhoG subfamily. 99.8 1.8E-20 3.8E-25 179.1 8.9 142 410-554 4-180 (191)
147 COG5126 FRQ1 Ca2+-binding prot 99.8 4.5E-20 9.8E-25 165.1 10.4 147 165-360 10-156 (160)
148 KOG0081|consensus 99.8 4.7E-21 1E-25 165.8 3.8 146 10-156 9-182 (219)
149 cd04159 Arl10_like Arl10-like 99.8 2.3E-19 5E-24 165.2 15.2 137 13-152 2-158 (159)
150 cd04120 Rab12 Rab12 subfamily. 99.8 2.8E-20 6E-25 178.4 8.2 140 411-553 2-165 (202)
151 KOG0083|consensus 99.8 4.4E-21 9.5E-26 161.1 2.3 141 14-156 1-161 (192)
152 KOG0097|consensus 99.8 1.9E-20 4.1E-25 158.8 5.3 144 406-553 8-175 (215)
153 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.8 6E-20 1.3E-24 172.4 9.2 142 409-554 2-167 (172)
154 cd04155 Arl3 Arl3 subfamily. 99.8 6.7E-19 1.5E-23 165.3 15.0 141 8-152 12-172 (173)
155 PRK05291 trmE tRNA modificatio 99.8 5.6E-19 1.2E-23 189.4 15.8 188 7-203 212-424 (449)
156 COG0486 ThdF Predicted GTPase 99.8 1.2E-18 2.6E-23 179.1 16.7 209 5-221 212-446 (454)
157 KOG0095|consensus 99.8 3.1E-20 6.7E-25 159.0 4.0 143 407-552 5-170 (213)
158 cd01897 NOG NOG1 is a nucleola 99.8 1.3E-18 2.9E-23 162.5 15.3 139 12-154 2-167 (168)
159 KOG0027|consensus 99.8 3.4E-19 7.4E-24 163.1 10.8 148 169-360 2-149 (151)
160 TIGR00450 mnmE_trmE_thdF tRNA 99.8 1.4E-18 3.1E-23 185.2 16.6 189 6-203 199-417 (442)
161 cd01890 LepA LepA subfamily. 99.8 1.3E-18 2.9E-23 164.3 14.4 137 12-154 2-176 (179)
162 PLN00023 GTP-binding protein; 99.8 9.2E-19 2E-23 175.2 13.6 122 8-130 19-166 (334)
163 cd01874 Cdc42 Cdc42 subfamily. 99.8 3E-19 6.6E-24 168.0 9.4 139 410-551 2-175 (175)
164 PF00025 Arf: ADP-ribosylation 99.8 6.3E-19 1.4E-23 165.8 11.5 143 8-154 12-175 (175)
165 KOG0081|consensus 99.8 7.1E-21 1.5E-25 164.7 -2.0 145 407-554 7-184 (219)
166 KOG0088|consensus 99.8 8.2E-20 1.8E-24 158.0 3.6 144 408-554 12-178 (218)
167 KOG4252|consensus 99.8 1.6E-19 3.4E-24 159.6 5.4 147 6-155 16-181 (246)
168 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.8 5E-19 1.1E-23 171.8 9.3 142 410-554 2-179 (222)
169 cd01898 Obg Obg subfamily. Th 99.8 4.3E-18 9.2E-23 159.3 14.5 140 12-153 2-169 (170)
170 cd04122 Rab14 Rab14 subfamily. 99.8 6.1E-19 1.3E-23 164.6 8.7 140 409-551 2-164 (166)
171 cd04117 Rab15 Rab15 subfamily. 99.8 6.6E-19 1.4E-23 163.5 8.3 137 410-549 1-160 (161)
172 COG1100 GTPase SAR1 and relate 99.8 4.7E-18 1E-22 166.1 13.3 149 10-159 5-189 (219)
173 cd01878 HflX HflX subfamily. 99.8 6.6E-18 1.4E-22 163.2 13.2 142 9-153 40-203 (204)
174 KOG0395|consensus 99.8 1.1E-18 2.4E-23 165.7 7.5 142 409-554 3-168 (196)
175 cd04107 Rab32_Rab38 Rab38/Rab3 99.8 1.8E-18 3.9E-23 166.7 9.0 143 410-554 1-171 (201)
176 cd04171 SelB SelB subfamily. 99.8 5.9E-18 1.3E-22 157.1 12.1 134 11-152 1-163 (164)
177 cd04134 Rho3 Rho3 subfamily. 99.8 3E-18 6.5E-23 163.5 10.2 141 411-554 2-177 (189)
178 TIGR00231 small_GTP small GTP- 99.7 2.4E-17 5.2E-22 151.3 14.9 140 10-150 1-159 (161)
179 cd04136 Rap_like Rap-like subf 99.7 3.7E-18 8E-23 158.5 9.3 137 410-550 2-162 (163)
180 TIGR03156 GTP_HflX GTP-binding 99.7 9.5E-18 2.1E-22 173.9 13.4 142 9-153 188-350 (351)
181 TIGR00436 era GTP-binding prot 99.7 2.7E-17 5.9E-22 165.7 16.3 136 12-154 2-163 (270)
182 cd01871 Rac1_like Rac1-like su 99.7 3.4E-18 7.3E-23 160.8 9.0 137 410-549 2-173 (174)
183 cd04128 Spg1 Spg1p. Spg1p (se 99.7 2.6E-18 5.7E-23 162.6 8.0 139 410-552 1-167 (182)
184 cd04127 Rab27A Rab27a subfamil 99.7 3.6E-18 7.8E-23 161.5 8.9 141 408-551 3-177 (180)
185 PF08477 Miro: Miro-like prote 99.7 7.6E-18 1.6E-22 147.9 10.3 113 12-126 1-119 (119)
186 cd04175 Rap1 Rap1 subgroup. T 99.7 4.4E-18 9.4E-23 158.4 9.0 137 410-550 2-162 (164)
187 PRK15494 era GTPase Era; Provi 99.7 1.8E-17 3.9E-22 171.7 14.2 148 8-162 50-222 (339)
188 cd04126 Rab20 Rab20 subfamily. 99.7 4.6E-18 1E-22 165.0 8.9 139 410-551 1-190 (220)
189 PF00071 Ras: Ras family; Int 99.7 2.9E-18 6.2E-23 159.2 7.1 138 411-551 1-161 (162)
190 KOG0393|consensus 99.7 1.4E-18 3E-23 161.0 4.9 143 409-554 4-182 (198)
191 TIGR02528 EutP ethanolamine ut 99.7 6.1E-18 1.3E-22 153.4 9.0 118 12-151 2-141 (142)
192 cd01887 IF2_eIF5B IF2/eIF5B (i 99.7 4E-17 8.6E-22 152.3 14.0 137 12-154 2-165 (168)
193 smart00174 RHO Rho (Ras homolo 99.7 9.4E-18 2E-22 157.7 9.1 139 412-553 1-174 (174)
194 KOG0073|consensus 99.7 9.1E-17 2E-21 140.8 14.4 145 8-156 14-179 (185)
195 cd04176 Rap2 Rap2 subgroup. T 99.7 1E-17 2.2E-22 155.7 9.1 137 410-550 2-162 (163)
196 cd04140 ARHI_like ARHI subfami 99.7 1.1E-17 2.4E-22 155.9 9.2 137 410-550 2-164 (165)
197 PTZ00369 Ras-like protein; Pro 99.7 1.1E-17 2.4E-22 159.6 9.3 140 409-552 5-168 (189)
198 cd01867 Rab8_Rab10_Rab13_like 99.7 1E-17 2.3E-22 156.4 8.9 141 408-551 2-165 (167)
199 cd04108 Rab36_Rab34 Rab34/Rab3 99.7 1.1E-17 2.3E-22 156.8 8.5 139 411-552 2-166 (170)
200 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.7 1.4E-17 2.9E-22 155.4 9.0 140 409-551 2-164 (166)
201 cd01865 Rab3 Rab3 subfamily. 99.7 1.4E-17 3.1E-22 155.2 8.7 138 410-550 2-162 (165)
202 cd04111 Rab39 Rab39 subfamily. 99.7 1.9E-17 4.1E-22 160.6 9.6 142 409-553 2-168 (211)
203 cd04138 H_N_K_Ras_like H-Ras/N 99.7 1.7E-17 3.7E-22 153.6 8.9 136 410-550 2-161 (162)
204 cd04110 Rab35 Rab35 subfamily. 99.7 1.6E-17 3.4E-22 159.8 8.8 144 408-554 5-170 (199)
205 cd01873 RhoBTB RhoBTB subfamil 99.7 2.2E-17 4.8E-22 157.7 9.5 137 409-550 2-195 (195)
206 cd04109 Rab28 Rab28 subfamily. 99.7 1.3E-17 2.9E-22 162.4 8.0 141 410-553 1-168 (215)
207 PLN03071 GTP-binding nuclear p 99.7 1.8E-17 3.8E-22 161.7 8.8 141 407-552 11-173 (219)
208 PRK12299 obgE GTPase CgtA; Rev 99.7 1.1E-16 2.3E-21 164.7 15.0 144 11-156 159-329 (335)
209 cd04144 Ras2 Ras2 subfamily. 99.7 1.8E-17 4E-22 158.2 8.7 140 411-554 1-166 (190)
210 cd04164 trmE TrmE (MnmE, ThdF, 99.7 1.6E-16 3.4E-21 146.2 14.5 136 10-154 1-156 (157)
211 cd04116 Rab9 Rab9 subfamily. 99.7 1.6E-17 3.4E-22 155.5 7.8 139 408-549 4-169 (170)
212 smart00173 RAS Ras subfamily o 99.7 2.1E-17 4.6E-22 153.6 8.5 138 410-551 1-162 (164)
213 KOG0075|consensus 99.7 3.2E-17 7E-22 140.5 8.2 144 8-154 18-181 (186)
214 cd01894 EngA1 EngA1 subfamily. 99.7 1.1E-16 2.3E-21 147.4 11.9 133 14-153 1-156 (157)
215 cd04135 Tc10 TC10 subfamily. 99.7 5.5E-17 1.2E-21 152.5 10.1 139 410-551 1-174 (174)
216 PRK03003 GTP-binding protein D 99.7 2.3E-16 5E-21 171.1 16.3 140 9-155 210-382 (472)
217 PLN03108 Rab family protein; P 99.7 3.6E-17 7.8E-22 158.6 8.9 143 408-553 5-170 (210)
218 cd01864 Rab19 Rab19 subfamily. 99.7 3.2E-17 7E-22 152.7 8.2 140 408-549 2-164 (165)
219 PRK04213 GTP-binding protein; 99.7 5.1E-17 1.1E-21 156.6 9.9 136 8-155 7-192 (201)
220 cd04145 M_R_Ras_like M-Ras/R-R 99.7 5E-17 1.1E-21 151.0 9.4 138 409-550 2-163 (164)
221 PRK11058 GTPase HflX; Provisio 99.7 1.9E-16 4.1E-21 167.9 14.8 143 11-156 198-363 (426)
222 cd01868 Rab11_like Rab11-like. 99.7 3.7E-17 8E-22 152.2 8.3 140 408-550 2-164 (165)
223 PTZ00099 rab6; Provisional 99.7 1.6E-16 3.5E-21 149.2 12.2 122 33-156 3-143 (176)
224 cd04103 Centaurin_gamma Centau 99.7 9.6E-17 2.1E-21 148.3 10.5 131 410-549 1-157 (158)
225 cd04106 Rab23_lke Rab23-like s 99.7 2.8E-17 6.1E-22 152.4 6.9 137 410-549 1-161 (162)
226 cd04119 RJL RJL (RabJ-Like) su 99.7 4.4E-17 9.5E-22 151.8 8.1 139 410-551 1-167 (168)
227 PLN03110 Rab GTPase; Provision 99.7 5.1E-17 1.1E-21 158.2 8.3 145 407-554 10-177 (216)
228 cd01881 Obg_like The Obg-like 99.7 1.7E-16 3.7E-21 149.1 11.6 137 15-153 1-175 (176)
229 cd04125 RabA_like RabA-like su 99.7 5.8E-17 1.2E-21 154.5 8.4 142 410-554 1-165 (188)
230 cd04105 SR_beta Signal recogni 99.7 4.6E-16 1E-20 149.8 14.6 119 12-130 2-124 (203)
231 cd01866 Rab2 Rab2 subfamily. 99.7 7.4E-17 1.6E-21 150.8 8.8 141 408-551 3-166 (168)
232 KOG0070|consensus 99.7 1.6E-16 3.4E-21 143.5 10.4 146 7-156 14-179 (181)
233 cd04115 Rab33B_Rab33A Rab33B/R 99.7 8.4E-17 1.8E-21 150.8 8.8 139 409-550 2-168 (170)
234 cd04130 Wrch_1 Wrch-1 subfamil 99.7 9.6E-17 2.1E-21 150.8 9.1 137 410-549 1-172 (173)
235 cd01895 EngA2 EngA2 subfamily. 99.7 8.1E-16 1.8E-20 143.8 15.4 137 10-153 2-173 (174)
236 cd01891 TypA_BipA TypA (tyrosi 99.7 5.1E-16 1.1E-20 148.8 14.1 113 11-129 3-131 (194)
237 cd04143 Rhes_like Rhes_like su 99.7 1.1E-16 2.4E-21 158.4 9.8 142 410-554 1-174 (247)
238 TIGR02729 Obg_CgtA Obg family 99.7 5E-16 1.1E-20 159.6 14.8 143 11-154 158-328 (329)
239 cd04132 Rho4_like Rho4-like su 99.7 6.6E-17 1.4E-21 153.9 7.4 142 410-554 1-170 (187)
240 cd00877 Ran Ran (Ras-related n 99.7 1.3E-16 2.9E-21 148.7 9.3 138 410-552 1-160 (166)
241 KOG3883|consensus 99.7 1.1E-15 2.4E-20 132.0 13.8 154 6-160 5-180 (198)
242 cd01879 FeoB Ferrous iron tran 99.7 3.8E-16 8.3E-21 144.0 11.8 132 15-154 1-156 (158)
243 cd04142 RRP22 RRP22 subfamily. 99.7 1.8E-16 4E-21 152.0 9.9 142 410-554 1-177 (198)
244 cd00881 GTP_translation_factor 99.7 7.5E-16 1.6E-20 146.5 14.0 137 12-154 1-186 (189)
245 cd04177 RSR1 RSR1 subgroup. R 99.7 2.2E-16 4.8E-21 147.6 9.6 139 410-551 2-164 (168)
246 KOG0096|consensus 99.7 1.2E-16 2.7E-21 143.3 7.3 153 1-156 1-170 (216)
247 cd04112 Rab26 Rab26 subfamily. 99.7 1.7E-16 3.6E-21 151.7 8.6 142 410-554 1-166 (191)
248 cd01889 SelB_euk SelB subfamil 99.7 6.2E-16 1.3E-20 147.9 12.4 142 11-158 1-189 (192)
249 cd04113 Rab4 Rab4 subfamily. 99.7 1.4E-16 3E-21 147.7 7.3 137 410-549 1-160 (161)
250 PRK15467 ethanolamine utilizat 99.7 4.3E-16 9.3E-21 143.9 10.4 126 12-156 3-148 (158)
251 KOG0028|consensus 99.7 7.3E-16 1.6E-20 134.3 10.8 148 164-359 22-169 (172)
252 smart00176 RAN Ran (Ras-relate 99.7 1.2E-16 2.6E-21 153.0 6.6 134 415-553 1-156 (200)
253 cd01870 RhoA_like RhoA-like su 99.7 4.3E-16 9.2E-21 146.5 10.0 138 410-550 2-174 (175)
254 KOG0083|consensus 99.6 9.9E-18 2.2E-22 141.0 -1.1 138 414-554 2-163 (192)
255 TIGR03594 GTPase_EngA ribosome 99.6 1.1E-15 2.4E-20 164.9 14.4 140 9-155 171-344 (429)
256 PF02421 FeoB_N: Ferrous iron 99.6 4.9E-16 1.1E-20 140.8 9.7 131 11-150 1-156 (156)
257 cd00882 Ras_like_GTPase Ras-li 99.6 1.4E-15 3E-20 138.0 12.2 135 15-151 1-156 (157)
258 COG1159 Era GTPase [General fu 99.6 1.6E-15 3.4E-20 147.7 12.8 140 9-154 5-171 (298)
259 cd04124 RabL2 RabL2 subfamily. 99.6 3.3E-16 7.1E-21 145.3 7.9 137 410-552 1-159 (161)
260 cd04163 Era Era subfamily. Er 99.6 2.4E-15 5.1E-20 139.4 13.7 139 9-153 2-167 (168)
261 PRK00089 era GTPase Era; Revie 99.6 2.6E-15 5.7E-20 153.3 15.1 140 10-155 5-171 (292)
262 cd04129 Rho2 Rho2 subfamily. 99.6 7.6E-16 1.6E-20 146.6 9.9 142 410-554 2-176 (187)
263 cd04101 RabL4 RabL4 (Rab-like4 99.6 2.6E-16 5.7E-21 146.3 6.6 138 410-550 1-163 (164)
264 TIGR01393 lepA GTP-binding pro 99.6 3E-15 6.6E-20 165.3 15.6 143 10-158 3-183 (595)
265 cd04146 RERG_RasL11_like RERG/ 99.6 5E-16 1.1E-20 144.6 8.0 136 411-550 1-163 (165)
266 cd04148 RGK RGK subfamily. Th 99.6 9.1E-16 2E-20 149.9 9.6 140 410-554 1-166 (221)
267 cd04118 Rab24 Rab24 subfamily. 99.6 7E-16 1.5E-20 147.6 8.5 141 410-553 1-168 (193)
268 PRK12297 obgE GTPase CgtA; Rev 99.6 4.1E-15 9E-20 156.7 14.9 144 11-156 159-328 (424)
269 PLN03118 Rab family protein; P 99.6 1.3E-15 2.9E-20 147.9 8.9 142 409-554 14-180 (211)
270 cd04168 TetM_like Tet(M)-like 99.6 2.2E-14 4.8E-19 141.1 17.5 194 12-226 1-235 (237)
271 cd01860 Rab5_related Rab5-rela 99.6 1.5E-15 3.2E-20 141.0 8.5 138 410-550 2-162 (163)
272 PRK12296 obgE GTPase CgtA; Rev 99.6 5.2E-15 1.1E-19 157.7 13.5 145 10-156 159-341 (500)
273 KOG0071|consensus 99.6 7.4E-15 1.6E-19 125.1 11.7 144 7-154 14-177 (180)
274 KOG1191|consensus 99.6 1.7E-14 3.7E-19 147.9 16.1 197 6-203 264-506 (531)
275 TIGR00487 IF-2 translation ini 99.6 5.2E-15 1.1E-19 162.6 13.3 139 8-152 85-247 (587)
276 PRK12298 obgE GTPase CgtA; Rev 99.6 1.1E-14 2.5E-19 152.6 15.1 144 11-156 160-334 (390)
277 cd01861 Rab6 Rab6 subfamily. 99.6 1.5E-15 3.3E-20 140.6 7.3 137 410-549 1-160 (161)
278 cd01862 Rab7 Rab7 subfamily. 99.6 2.6E-15 5.6E-20 140.6 8.7 142 410-553 1-169 (172)
279 PRK00093 GTP-binding protein D 99.6 1.4E-14 3E-19 156.5 15.0 140 9-154 172-343 (435)
280 PRK05306 infB translation init 99.6 9.1E-15 2E-19 164.2 13.8 137 7-152 287-449 (787)
281 cd04139 RalA_RalB RalA/RalB su 99.6 3.5E-15 7.5E-20 138.4 8.7 137 410-550 1-161 (164)
282 cd01896 DRG The developmentall 99.6 1.6E-14 3.6E-19 141.8 13.9 142 12-154 2-225 (233)
283 smart00175 RAB Rab subfamily o 99.6 1.5E-15 3.3E-20 140.9 6.3 139 410-551 1-162 (164)
284 cd04102 RabL3 RabL3 (Rab-like3 99.6 2.2E-15 4.8E-20 144.2 7.5 137 410-549 1-198 (202)
285 PRK00454 engB GTP-binding prot 99.6 1.4E-14 3E-19 138.9 13.0 140 8-154 22-193 (196)
286 cd04123 Rab21 Rab21 subfamily. 99.6 3.4E-15 7.3E-20 138.1 8.3 138 410-550 1-161 (162)
287 PRK09518 bifunctional cytidyla 99.6 1E-14 2.2E-19 165.8 13.9 140 9-155 449-621 (712)
288 cd01888 eIF2_gamma eIF2-gamma 99.6 1.3E-14 2.7E-19 140.0 12.5 139 11-157 1-201 (203)
289 TIGR03598 GTPase_YsxC ribosome 99.6 8.9E-15 1.9E-19 138.2 11.1 128 8-144 16-179 (179)
290 KOG4252|consensus 99.6 4.5E-16 9.8E-21 137.8 1.5 142 408-552 19-182 (246)
291 CHL00189 infB translation init 99.6 1.4E-14 3E-19 161.3 13.6 139 7-154 241-409 (742)
292 PLN00223 ADP-ribosylation fact 99.6 6.5E-15 1.4E-19 139.3 9.1 136 408-551 16-178 (181)
293 cd04162 Arl9_Arfrp2_like Arl9/ 99.6 2.2E-15 4.7E-20 140.2 5.6 135 411-548 1-163 (164)
294 cd01863 Rab18 Rab18 subfamily. 99.6 7.5E-15 1.6E-19 136.0 9.1 136 410-549 1-160 (161)
295 PLN00023 GTP-binding protein; 99.6 1.9E-15 4.1E-20 151.4 4.9 126 403-530 15-192 (334)
296 cd04114 Rab30 Rab30 subfamily. 99.6 7.9E-15 1.7E-19 137.0 8.7 140 408-550 6-168 (169)
297 cd04147 Ras_dva Ras-dva subfam 99.6 7.8E-15 1.7E-19 141.0 8.8 140 411-554 1-166 (198)
298 COG1160 Predicted GTPases [Gen 99.5 3.5E-14 7.5E-19 146.0 13.1 141 9-155 177-351 (444)
299 KOG0031|consensus 99.5 2.5E-14 5.5E-19 123.6 10.2 139 168-358 25-163 (171)
300 TIGR00475 selB selenocysteine- 99.5 1.6E-14 3.6E-19 159.4 11.2 136 11-155 1-166 (581)
301 smart00177 ARF ARF-like small 99.5 1.5E-14 3.3E-19 136.1 9.4 136 408-551 12-174 (175)
302 cd04149 Arf6 Arf6 subfamily. 99.5 6.5E-15 1.4E-19 137.6 6.7 136 408-548 8-167 (168)
303 cd04137 RheB Rheb (Ras Homolog 99.5 1.1E-14 2.4E-19 137.6 8.2 140 410-553 2-165 (180)
304 PF00009 GTP_EFTU: Elongation 99.5 8.9E-15 1.9E-19 139.4 7.5 140 9-154 2-186 (188)
305 KOG0074|consensus 99.5 2.7E-14 5.9E-19 121.8 9.2 149 3-154 10-178 (185)
306 PRK05433 GTP-binding protein L 99.5 6.6E-14 1.4E-18 154.9 14.7 144 9-158 6-187 (600)
307 KOG0076|consensus 99.5 1.4E-14 3.1E-19 128.4 7.5 148 7-157 14-189 (197)
308 cd00880 Era_like Era (E. coli 99.5 5.7E-14 1.2E-18 128.8 11.9 133 15-153 1-162 (163)
309 cd00157 Rho Rho (Ras homology) 99.5 1.8E-14 3.9E-19 134.7 8.5 136 410-548 1-170 (171)
310 PTZ00133 ADP-ribosylation fact 99.5 2.5E-14 5.5E-19 135.4 9.1 137 407-551 15-178 (182)
311 TIGR00491 aIF-2 translation in 99.5 6.1E-14 1.3E-18 153.8 13.0 109 12-129 6-135 (590)
312 cd01893 Miro1 Miro1 subfamily. 99.5 3.8E-14 8.3E-19 132.1 9.1 141 411-553 2-166 (166)
313 cd04158 ARD1 ARD1 subfamily. 99.5 2.5E-14 5.5E-19 133.8 7.7 135 411-550 1-160 (169)
314 PTZ00183 centrin; Provisional 99.5 9.9E-14 2.2E-18 128.1 11.3 146 167-360 9-154 (158)
315 cd00876 Ras Ras family. The R 99.5 2.3E-14 5.1E-19 132.2 7.1 135 411-549 1-159 (160)
316 PRK09554 feoB ferrous iron tra 99.5 2.9E-13 6.3E-18 153.1 17.2 137 9-154 2-167 (772)
317 TIGR02528 EutP ethanolamine ut 99.5 2.3E-14 5.1E-19 129.8 6.6 126 411-547 2-141 (142)
318 PTZ00132 GTP-binding nuclear p 99.5 5.4E-14 1.2E-18 137.0 9.5 142 407-553 7-170 (215)
319 cd04170 EF-G_bact Elongation f 99.5 7.3E-14 1.6E-18 140.7 10.4 113 12-130 1-131 (268)
320 TIGR00437 feoB ferrous iron tr 99.5 9.2E-14 2E-18 153.7 11.4 130 17-155 1-155 (591)
321 cd01886 EF-G Elongation factor 99.5 3.7E-13 8E-18 134.8 14.4 113 12-130 1-131 (270)
322 cd04167 Snu114p Snu114p subfam 99.5 3.3E-13 7.1E-18 131.2 13.5 111 12-128 2-136 (213)
323 KOG1423|consensus 99.5 1.9E-13 4.1E-18 132.1 11.5 143 8-155 70-271 (379)
324 PTZ00184 calmodulin; Provision 99.5 1.1E-13 2.5E-18 126.2 9.7 142 168-357 4-145 (149)
325 KOG0072|consensus 99.5 7.6E-14 1.6E-18 119.5 7.8 144 9-156 17-180 (182)
326 cd04150 Arf1_5_like Arf1-Arf5- 99.5 2.1E-14 4.5E-19 133.0 4.7 131 410-548 1-158 (159)
327 cd04166 CysN_ATPS CysN_ATPS su 99.5 1.1E-13 2.4E-18 133.9 9.9 129 12-145 1-184 (208)
328 KOG4423|consensus 99.5 1.1E-15 2.4E-20 136.6 -4.1 143 10-158 25-197 (229)
329 PF10662 PduV-EutP: Ethanolami 99.5 1.9E-13 4E-18 121.0 9.7 119 12-151 3-142 (143)
330 COG2229 Predicted GTPase [Gene 99.5 7.2E-13 1.6E-17 119.6 13.4 143 6-153 6-176 (187)
331 cd04154 Arl2 Arl2 subfamily. 99.5 7.4E-14 1.6E-18 131.1 7.1 135 408-548 13-172 (173)
332 cd04157 Arl6 Arl6 subfamily. 99.5 1.1E-13 2.4E-18 128.2 8.1 131 411-548 1-161 (162)
333 TIGR00483 EF-1_alpha translati 99.5 1.9E-13 4.2E-18 146.7 10.6 139 7-148 4-200 (426)
334 PRK10218 GTP-binding protein; 99.5 9.5E-13 2.1E-17 144.9 16.2 144 9-158 4-198 (607)
335 TIGR03680 eif2g_arch translati 99.5 3.5E-13 7.5E-18 143.4 12.2 140 8-155 2-196 (406)
336 KOG4423|consensus 99.5 1E-14 2.2E-19 130.4 0.3 147 406-554 22-197 (229)
337 cd01884 EF_Tu EF-Tu subfamily. 99.5 5.4E-13 1.2E-17 127.2 11.9 114 10-129 2-132 (195)
338 PRK04000 translation initiatio 99.4 5.1E-13 1.1E-17 142.0 13.0 145 3-155 2-201 (411)
339 PRK12317 elongation factor 1-a 99.4 2.6E-13 5.7E-18 145.7 10.7 138 7-147 3-197 (425)
340 cd04161 Arl2l1_Arl13_like Arl2 99.4 8.1E-14 1.7E-18 130.1 5.8 135 411-548 1-166 (167)
341 cd01876 YihA_EngB The YihA (En 99.4 7.3E-13 1.6E-17 123.0 11.8 135 12-153 1-169 (170)
342 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.4 2E-13 4.4E-18 129.4 7.8 141 409-554 3-173 (183)
343 cd00154 Rab Rab family. Rab G 99.4 1.4E-13 3E-18 126.4 6.5 135 410-547 1-158 (159)
344 KOG0030|consensus 99.4 2.7E-13 5.9E-18 115.4 7.6 144 170-358 6-149 (152)
345 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.4 3.7E-13 8.1E-18 126.5 8.8 133 408-548 14-173 (174)
346 PF09439 SRPRB: Signal recogni 99.4 9.5E-13 2.1E-17 122.0 10.9 116 11-128 4-125 (181)
347 KOG1673|consensus 99.4 2.9E-13 6.4E-18 117.4 6.6 145 9-156 19-187 (205)
348 PRK04004 translation initiatio 99.4 2E-12 4.3E-17 142.7 14.6 134 9-151 5-166 (586)
349 TIGR01394 TypA_BipA GTP-bindin 99.4 2.2E-12 4.8E-17 142.3 14.5 142 11-158 2-194 (594)
350 KOG0037|consensus 99.4 8.8E-13 1.9E-17 121.7 9.3 132 174-359 56-187 (221)
351 cd04156 ARLTS1 ARLTS1 subfamil 99.4 1.7E-13 3.7E-18 126.7 3.9 129 411-548 1-159 (160)
352 PRK10512 selenocysteinyl-tRNA- 99.4 2E-12 4.3E-17 143.4 12.9 131 12-154 2-165 (614)
353 cd04151 Arl1 Arl1 subfamily. 99.4 8.1E-13 1.8E-17 122.0 8.3 130 411-548 1-157 (158)
354 cd04165 GTPBP1_like GTPBP1-lik 99.4 4E-12 8.6E-17 123.9 13.3 112 12-129 1-152 (224)
355 TIGR00484 EF-G translation elo 99.4 5.2E-12 1.1E-16 143.3 16.1 122 3-130 3-142 (689)
356 cd01883 EF1_alpha Eukaryotic e 99.4 1.3E-12 2.8E-17 127.4 9.6 112 12-128 1-150 (219)
357 cd00879 Sar1 Sar1 subfamily. 99.4 9.1E-13 2E-17 125.7 8.1 134 409-549 19-189 (190)
358 cd04169 RF3 RF3 subfamily. Pe 99.4 6.7E-12 1.5E-16 125.6 14.4 112 11-128 3-136 (267)
359 cd00878 Arf_Arl Arf (ADP-ribos 99.4 7.9E-13 1.7E-17 122.0 6.7 130 411-548 1-157 (158)
360 cd04104 p47_IIGP_like p47 (47- 99.4 5E-12 1.1E-16 121.3 11.4 137 10-155 1-146 (197)
361 cd01885 EF2 EF2 (for archaea a 99.3 9.7E-12 2.1E-16 120.7 13.4 111 12-128 2-138 (222)
362 smart00178 SAR Sar1p-like memb 99.3 3.2E-12 6.8E-17 121.3 9.2 133 409-549 17-183 (184)
363 COG0370 FeoB Fe2+ transport sy 99.3 1.7E-11 3.6E-16 132.1 15.7 142 9-159 2-168 (653)
364 PRK12736 elongation factor Tu; 99.3 9E-12 2E-16 132.1 13.6 117 7-129 9-142 (394)
365 KOG1489|consensus 99.3 5.8E-12 1.3E-16 122.7 10.8 140 11-151 197-363 (366)
366 COG1084 Predicted GTPase [Gene 99.3 2.3E-11 5E-16 119.8 14.4 144 8-156 166-337 (346)
367 cd04159 Arl10_like Arl10-like 99.3 4.4E-12 9.6E-17 116.4 8.7 131 411-548 1-158 (159)
368 cd01899 Ygr210 Ygr210 subfamil 99.3 4E-11 8.7E-16 122.4 16.3 80 13-92 1-111 (318)
369 PRK12735 elongation factor Tu; 99.3 1.2E-11 2.6E-16 131.3 12.3 118 6-129 8-142 (396)
370 COG1100 GTPase SAR1 and relate 99.3 4.6E-12 1E-16 123.7 8.4 142 410-553 6-187 (219)
371 COG1163 DRG Predicted GTPase [ 99.3 3.1E-11 6.7E-16 118.3 13.6 143 10-154 63-288 (365)
372 PRK13351 elongation factor G; 99.3 5.4E-11 1.2E-15 135.4 17.8 130 8-154 6-153 (687)
373 COG2262 HflX GTPases [General 99.3 2.7E-11 5.9E-16 123.0 13.6 145 9-156 191-357 (411)
374 COG3596 Predicted GTPase [Gene 99.3 1.6E-11 3.5E-16 118.1 11.3 145 7-155 36-222 (296)
375 PF01926 MMR_HSR1: 50S ribosom 99.3 3.2E-11 7E-16 105.2 12.0 105 12-124 1-116 (116)
376 KOG0077|consensus 99.3 6.4E-12 1.4E-16 110.7 6.9 121 8-132 18-138 (193)
377 TIGR00485 EF-Tu translation el 99.3 2.8E-11 6.1E-16 128.5 13.3 117 7-129 9-142 (394)
378 PRK00007 elongation factor G; 99.3 4.6E-11 9.9E-16 135.5 15.7 119 6-130 6-142 (693)
379 cd01890 LepA LepA subfamily. 99.3 6.7E-12 1.5E-16 118.3 7.3 138 411-552 2-178 (179)
380 CHL00071 tufA elongation facto 99.3 3.5E-11 7.5E-16 128.3 13.5 118 6-129 8-142 (409)
381 cd04155 Arl3 Arl3 subfamily. 99.3 1.2E-11 2.5E-16 116.0 8.7 132 409-548 14-172 (173)
382 PRK04213 GTP-binding protein; 99.3 5.5E-12 1.2E-16 121.5 6.4 134 409-550 9-191 (201)
383 cd04160 Arfrp1 Arfrp1 subfamil 99.3 6.9E-12 1.5E-16 116.8 6.6 134 411-548 1-166 (167)
384 COG0218 Predicted GTPase [Gene 99.2 6.4E-11 1.4E-15 109.7 11.2 139 9-154 23-196 (200)
385 KOG0090|consensus 99.2 4E-11 8.6E-16 110.6 9.6 119 10-131 38-161 (238)
386 TIGR02034 CysN sulfate adenyly 99.2 3.7E-11 8E-16 127.9 10.8 130 11-145 1-187 (406)
387 PLN03126 Elongation factor Tu; 99.2 2.5E-11 5.5E-16 130.6 9.6 118 6-129 77-211 (478)
388 COG0532 InfB Translation initi 99.2 2.8E-11 6.1E-16 126.8 9.6 135 10-154 5-169 (509)
389 PRK05124 cysN sulfate adenylyl 99.2 4.7E-11 1E-15 129.1 11.3 118 7-129 24-174 (474)
390 KOG1673|consensus 99.2 7.9E-12 1.7E-16 108.6 4.2 142 408-553 19-188 (205)
391 TIGR00231 small_GTP small GTP- 99.2 3E-11 6.4E-16 110.5 8.4 133 410-546 2-159 (161)
392 PLN03127 Elongation factor Tu; 99.2 1.1E-10 2.4E-15 125.0 13.9 117 7-129 58-191 (447)
393 PRK00049 elongation factor Tu; 99.2 8.1E-11 1.8E-15 124.9 12.3 117 7-129 9-142 (396)
394 cd01897 NOG NOG1 is a nucleola 99.2 4.6E-11 9.9E-16 111.3 9.2 135 411-550 2-167 (168)
395 KOG0034|consensus 99.2 6.1E-11 1.3E-15 110.4 9.8 141 167-361 25-176 (187)
396 PRK00741 prfC peptide chain re 99.2 1.5E-10 3.2E-15 126.3 13.9 134 8-158 8-163 (526)
397 cd01878 HflX HflX subfamily. 99.2 2.6E-11 5.7E-16 117.0 7.1 136 406-549 38-203 (204)
398 KOG0096|consensus 99.2 8.8E-12 1.9E-16 112.4 3.4 139 408-551 9-169 (216)
399 TIGR00503 prfC peptide chain r 99.2 1.8E-10 3.8E-15 125.7 14.2 132 7-155 8-161 (527)
400 KOG0462|consensus 99.2 9.4E-11 2E-15 121.8 11.0 146 9-160 59-240 (650)
401 cd01879 FeoB Ferrous iron tran 99.2 5E-11 1.1E-15 109.7 7.9 133 414-550 1-156 (158)
402 PLN00043 elongation factor 1-a 99.2 5.9E-11 1.3E-15 127.2 9.5 116 7-128 4-158 (447)
403 PRK12739 elongation factor G; 99.2 3E-10 6.4E-15 129.0 15.7 117 8-130 6-140 (691)
404 COG0481 LepA Membrane GTPase L 99.2 5.9E-11 1.3E-15 121.2 8.7 147 7-159 6-190 (603)
405 PF00025 Arf: ADP-ribosylation 99.2 7.7E-11 1.7E-15 110.8 8.7 136 407-550 12-175 (175)
406 PTZ00327 eukaryotic translatio 99.2 1.5E-10 3.3E-15 123.7 11.5 142 7-156 31-234 (460)
407 smart00010 small_GTPase Small 99.2 7.7E-11 1.7E-15 103.7 7.7 105 11-144 1-115 (124)
408 PRK05506 bifunctional sulfate 99.2 9.3E-11 2E-15 132.0 10.1 135 6-145 20-211 (632)
409 KOG1145|consensus 99.2 1.5E-10 3.2E-15 120.2 10.4 134 9-154 152-315 (683)
410 PTZ00141 elongation factor 1- 99.1 1.4E-10 3.1E-15 124.4 10.4 117 7-128 4-158 (446)
411 cd04171 SelB SelB subfamily. 99.1 5.4E-11 1.2E-15 110.1 5.7 135 411-548 2-163 (164)
412 PRK00454 engB GTP-binding prot 99.1 9.9E-11 2.2E-15 112.1 7.1 143 405-550 20-193 (196)
413 PRK15467 ethanolamine utilizat 99.1 1.1E-10 2.4E-15 107.8 6.8 129 411-550 3-146 (158)
414 PRK09602 translation-associate 99.1 2.3E-09 5E-14 112.9 17.4 81 11-91 2-113 (396)
415 PRK09866 hypothetical protein; 99.1 5.4E-09 1.2E-13 112.4 20.1 94 57-154 230-352 (741)
416 PTZ00099 rab6; Provisional 99.1 1.4E-10 3E-15 109.0 7.3 119 432-553 3-144 (176)
417 COG0536 Obg Predicted GTPase [ 99.1 6E-10 1.3E-14 110.3 11.8 145 12-157 161-335 (369)
418 cd01852 AIG1 AIG1 (avrRpt2-ind 99.1 1.6E-09 3.5E-14 103.8 14.6 117 11-130 1-131 (196)
419 cd01887 IF2_eIF5B IF2/eIF5B (i 99.1 1.1E-10 2.3E-15 108.7 6.2 137 411-550 2-165 (168)
420 KOG0036|consensus 99.1 2.9E-10 6.3E-15 113.9 9.0 151 167-371 6-157 (463)
421 PF08477 Miro: Miro-like prote 99.1 2.2E-10 4.7E-15 100.3 6.9 91 411-506 1-119 (119)
422 KOG0073|consensus 99.1 2.4E-10 5.1E-15 100.8 6.9 141 409-553 16-180 (185)
423 KOG3883|consensus 99.1 1E-09 2.3E-14 95.3 10.6 146 408-560 8-184 (198)
424 cd01898 Obg Obg subfamily. Th 99.1 2.5E-10 5.5E-15 106.5 6.6 135 411-549 2-169 (170)
425 cd01850 CDC_Septin CDC/Septin. 99.0 5.8E-10 1.3E-14 112.2 8.6 113 10-128 4-156 (276)
426 PF04670 Gtr1_RagA: Gtr1/RagA 99.0 1.2E-09 2.7E-14 105.9 10.1 116 12-129 1-125 (232)
427 PRK12740 elongation factor G; 99.0 4.9E-09 1.1E-13 119.2 15.9 108 16-129 1-126 (668)
428 cd01891 TypA_BipA TypA (tyrosi 99.0 4.6E-10 9.9E-15 107.5 6.3 137 411-550 4-191 (194)
429 TIGR00450 mnmE_trmE_thdF tRNA 99.0 1E-09 2.2E-14 117.4 9.5 135 408-552 202-361 (442)
430 TIGR03156 GTP_HflX GTP-binding 99.0 6.3E-10 1.4E-14 115.7 7.4 134 407-549 187-350 (351)
431 TIGR00490 aEF-2 translation el 99.0 1.9E-09 4.1E-14 122.8 11.9 115 9-129 18-152 (720)
432 PRK15494 era GTPase Era; Provi 99.0 1E-09 2.3E-14 113.8 8.8 138 407-550 50-215 (339)
433 cd01894 EngA1 EngA1 subfamily. 99.0 1.2E-09 2.6E-14 100.1 7.6 129 413-549 1-156 (157)
434 KOG0044|consensus 99.0 8.2E-10 1.8E-14 102.9 6.0 138 169-357 23-172 (193)
435 cd01853 Toc34_like Toc34-like 99.0 7.8E-09 1.7E-13 102.2 13.2 124 6-132 27-166 (249)
436 PRK05291 trmE tRNA modificatio 99.0 1.4E-09 3E-14 117.1 8.6 133 408-551 214-370 (449)
437 TIGR00991 3a0901s02IAP34 GTP-b 98.9 1.1E-08 2.4E-13 102.5 13.3 122 6-129 34-167 (313)
438 TIGR00437 feoB ferrous iron tr 98.9 1.1E-09 2.4E-14 121.4 6.4 132 416-551 1-155 (591)
439 KOG0070|consensus 98.9 3E-09 6.5E-14 96.6 7.9 136 406-552 14-179 (181)
440 TIGR00436 era GTP-binding prot 98.9 4.8E-09 1E-13 105.8 10.4 137 411-550 2-163 (270)
441 COG5256 TEF1 Translation elong 98.9 3.6E-09 7.8E-14 107.6 9.1 131 7-145 4-201 (428)
442 cd00881 GTP_translation_factor 98.9 1.8E-09 3.8E-14 102.5 6.0 138 411-550 1-186 (189)
443 COG4917 EutP Ethanolamine util 98.9 2.3E-09 5E-14 90.3 5.9 121 12-152 3-143 (148)
444 KOG1532|consensus 98.9 7.8E-09 1.7E-13 98.9 10.0 144 7-154 16-263 (366)
445 PF10662 PduV-EutP: Ethanolami 98.9 4.4E-09 9.6E-14 93.3 7.8 127 411-547 3-142 (143)
446 cd05022 S-100A13 S-100A13: S-1 98.9 1.1E-09 2.4E-14 89.5 3.4 69 293-361 5-76 (89)
447 PRK12299 obgE GTPase CgtA; Rev 98.9 5.5E-09 1.2E-13 107.7 9.2 142 407-551 156-328 (335)
448 cd01895 EngA2 EngA2 subfamily. 98.9 5.1E-09 1.1E-13 97.6 7.9 139 409-549 2-173 (174)
449 cd04163 Era Era subfamily. Er 98.9 1.2E-08 2.7E-13 94.1 10.4 139 409-549 3-167 (168)
450 cd00882 Ras_like_GTPase Ras-li 98.9 3.1E-09 6.7E-14 95.9 5.8 131 414-547 1-156 (157)
451 cd01882 BMS1 Bms1. Bms1 is an 98.9 2.8E-08 6.1E-13 97.2 12.9 110 7-128 36-146 (225)
452 PF02421 FeoB_N: Ferrous iron 98.9 4.1E-09 8.8E-14 95.7 6.4 128 410-546 1-156 (156)
453 cd04164 trmE TrmE (MnmE, ThdF, 98.8 7.9E-09 1.7E-13 94.7 8.1 131 410-550 2-156 (157)
454 KOG0075|consensus 98.8 1.7E-09 3.7E-14 93.4 3.2 139 405-550 16-181 (186)
455 PRK09435 membrane ATPase/prote 98.8 1.9E-08 4E-13 103.0 11.2 88 55-155 147-260 (332)
456 PRK00089 era GTPase Era; Revie 98.8 2.1E-08 4.5E-13 102.5 11.6 139 410-550 6-170 (292)
457 COG4108 PrfC Peptide chain rel 98.8 2.2E-08 4.8E-13 101.9 11.3 119 8-132 10-150 (528)
458 PLN00116 translation elongatio 98.8 1.1E-08 2.3E-13 118.4 10.2 115 8-128 17-163 (843)
459 KOG1490|consensus 98.8 1.2E-08 2.6E-13 105.3 9.2 146 6-154 164-340 (620)
460 PRK14845 translation initiatio 98.8 1.1E-08 2.3E-13 118.2 9.9 99 21-128 472-591 (1049)
461 cd01876 YihA_EngB The YihA (En 98.8 2.7E-09 6E-14 98.8 4.3 137 411-549 1-169 (170)
462 TIGR03598 GTPase_YsxC ribosome 98.8 3.1E-09 6.7E-14 100.3 4.7 133 405-539 14-178 (179)
463 COG0480 FusA Translation elong 98.8 3.9E-08 8.4E-13 109.5 13.4 133 7-156 7-158 (697)
464 TIGR02729 Obg_CgtA Obg family 98.8 1.4E-08 3E-13 104.7 9.3 140 407-550 155-328 (329)
465 cd01881 Obg_like The Obg-like 98.8 5.9E-09 1.3E-13 97.7 6.0 55 494-549 119-175 (176)
466 PRK13768 GTPase; Provisional 98.8 2.1E-08 4.6E-13 99.7 10.2 71 58-130 98-177 (253)
467 COG0218 Predicted GTPase [Gene 98.8 7.9E-09 1.7E-13 95.9 6.5 141 408-550 23-196 (200)
468 PTZ00416 elongation factor 2; 98.8 1.6E-08 3.5E-13 116.7 10.6 115 8-128 17-157 (836)
469 PRK11058 GTPase HflX; Provisio 98.8 1.7E-08 3.6E-13 107.5 9.3 137 408-551 196-362 (426)
470 TIGR01393 lepA GTP-binding pro 98.8 1.3E-08 2.9E-13 112.9 8.8 142 409-554 3-183 (595)
471 COG1217 TypA Predicted membran 98.8 4.9E-08 1.1E-12 100.0 11.7 145 9-159 4-199 (603)
472 TIGR00487 IF-2 translation ini 98.8 2.4E-08 5.2E-13 110.3 9.4 135 409-550 87-249 (587)
473 PF03029 ATP_bind_1: Conserved 98.7 8E-09 1.7E-13 101.4 5.0 96 58-154 92-236 (238)
474 TIGR00101 ureG urease accessor 98.7 7.1E-08 1.5E-12 92.3 11.1 87 56-155 91-196 (199)
475 KOG4223|consensus 98.7 1.6E-08 3.5E-13 99.1 6.6 147 172-362 160-307 (325)
476 cd05027 S-100B S-100B: S-100B 98.7 7.7E-09 1.7E-13 84.7 3.2 68 293-360 5-79 (88)
477 smart00027 EH Eps15 homology d 98.7 8.5E-09 1.8E-13 86.5 3.6 72 289-362 3-74 (96)
478 TIGR00750 lao LAO/AO transport 98.7 8.2E-08 1.8E-12 98.2 11.5 88 55-155 125-238 (300)
479 PRK07560 elongation factor EF- 98.7 6.5E-08 1.4E-12 110.6 11.7 115 9-129 19-153 (731)
480 cd01889 SelB_euk SelB subfamil 98.7 1.3E-08 2.9E-13 97.1 5.1 142 410-554 1-189 (192)
481 PF13499 EF-hand_7: EF-hand do 98.7 2.4E-09 5.2E-14 83.1 -0.1 61 297-357 1-65 (66)
482 KOG0461|consensus 98.7 1.4E-07 3.1E-12 93.0 11.8 148 7-160 4-198 (522)
483 PLN02964 phosphatidylserine de 98.6 1.1E-07 2.4E-12 104.3 10.2 104 168-324 136-243 (644)
484 COG0486 ThdF Predicted GTPase 98.6 4.5E-08 9.7E-13 101.7 6.6 144 402-553 210-378 (454)
485 smart00053 DYNc Dynamin, GTPas 98.6 3.6E-07 7.8E-12 89.4 12.3 68 57-129 125-206 (240)
486 COG5257 GCD11 Translation init 98.6 1.1E-07 2.4E-12 93.2 8.4 146 8-161 8-208 (415)
487 PRK09554 feoB ferrous iron tra 98.6 8.5E-08 1.8E-12 109.1 9.0 135 410-550 4-167 (772)
488 COG2895 CysN GTPases - Sulfate 98.6 9E-08 2E-12 95.0 7.9 130 6-143 2-191 (431)
489 PF00350 Dynamin_N: Dynamin fa 98.6 1.9E-07 4.1E-12 87.0 9.8 63 58-125 102-168 (168)
490 cd01896 DRG The developmentall 98.6 1.4E-07 3.1E-12 92.7 9.3 49 494-550 175-225 (233)
491 CHL00189 infB translation init 98.6 7E-08 1.5E-12 108.2 7.6 140 408-550 243-409 (742)
492 TIGR00157 ribosome small subun 98.6 4.3E-08 9.3E-13 97.0 5.3 80 68-152 24-120 (245)
493 PRK12296 obgE GTPase CgtA; Rev 98.6 9.5E-08 2.1E-12 102.5 8.3 140 407-552 157-341 (500)
494 cd00052 EH Eps15 homology doma 98.6 2.1E-08 4.5E-13 77.9 2.2 62 299-362 2-63 (67)
495 PRK05306 infB translation init 98.6 1.3E-07 2.9E-12 107.0 9.6 138 410-550 291-451 (787)
496 PRK12297 obgE GTPase CgtA; Rev 98.6 1.4E-07 3.1E-12 99.9 9.1 137 408-551 157-327 (424)
497 KOG1707|consensus 98.6 4.1E-07 8.9E-12 96.1 12.2 148 6-160 421-588 (625)
498 cd05026 S-100Z S-100Z: S-100Z 98.6 3.7E-08 7.9E-13 81.9 3.5 69 293-361 7-82 (93)
499 TIGR00475 selB selenocysteine- 98.6 4.7E-08 1E-12 108.5 5.2 137 411-551 2-166 (581)
500 KOG1144|consensus 98.6 1.9E-07 4.1E-12 100.2 9.2 135 11-154 476-686 (1064)
No 1
>KOG1707|consensus
Probab=100.00 E-value=1.1e-113 Score=882.25 Aligned_cols=576 Identities=46% Similarity=0.796 Sum_probs=525.5
Q ss_pred ccCCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcE
Q psy3301 5 VSLRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVI 84 (608)
Q Consensus 5 ~~~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 84 (608)
...++.+||+|+|+.||||||||.+|+.++|++++|+..++++||.+++++.+++.|+||+..++....+..++++||++
T Consensus 4 ~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi 83 (625)
T KOG1707|consen 4 DETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVI 83 (625)
T ss_pred ccCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEE
Confidence 35678999999999999999999999999999999999999999999999999999999998888888889999999999
Q ss_pred EEEEEcCChhhHHHHHHhHHHHHhhh-ccCCCCcEEEEEeCcCCCCCCC--------------------cccCcccCcCH
Q psy3301 85 CLVYSVVDDASIDRLSSHWLPFLRNC-LVDTCLPIVLVGNKVDLVDYST--------------------VESSAKTLKNI 143 (608)
Q Consensus 85 ilV~d~~~~~s~~~~~~~~~~~i~~~-~~~~~~piilv~nK~Dl~~~~~--------------------~e~SAk~~~~i 143 (608)
++||+++++++++.+..+|++++++. ....++||||||||+|...... ++|||++..|+
T Consensus 84 ~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~ 163 (625)
T KOG1707|consen 84 CLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANV 163 (625)
T ss_pred EEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhh
Confidence 99999999999999999999999964 2338999999999999875433 99999999999
Q ss_pred HHHHHHHHHHHhCCCCCccccccccChHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHH
Q psy3301 144 SEMFYYAQKAVLHPMAPIYISDKQELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRK 223 (608)
Q Consensus 144 ~~lf~~l~~~i~~~~~~l~~~~~~~l~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~ 223 (608)
.|+|++++++++||..|+|++..+++++.|+.+|.|+|.++|.|+||.+++.|++.++++||+.+++..+++.++..++.
T Consensus 164 ~e~fYyaqKaVihPt~PLyda~~qelkp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e 243 (625)
T KOG1707|consen 164 SELFYYAQKAVIHPTSPLYDAEEQELKPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQE 243 (625)
T ss_pred HhhhhhhhheeeccCccccccccccccHHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCccCCCCcchhhHHHHHHHHHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHh
Q psy3301 224 NINDGVSANNCITLNGFLFLHNLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFY 303 (608)
Q Consensus 224 ~~~~~~~~~~~i~~~~F~~l~~~~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~ 303 (608)
.+|+|+. +.++|..||++||.+|+++|||||||+|||+|||+|+|+|+++|++|.+.+|+++++||++.+++||..+|.
T Consensus 244 ~~p~gv~-~~~ltl~GFLfL~~lfiergr~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~ 322 (625)
T KOG1707|consen 244 ICPDGVY-ERGLTLPGFLFLNTLFIERGRHETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFE 322 (625)
T ss_pred hcCchhh-hccccccchHHHHHHHHHhccccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHH
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCCHHHHHHhhccCCCCCCCCCccccccceecCCCCccchhhHHhHhhhhhccCHHHHHHHHHhcCCCCCCC
Q psy3301 304 RFDKDGDGALSPEEQARLFSLCPPECPPWTDREMRAMVATNSKGWITMQGFLCYWILTTLFNVNKTLEYLAYFGYPITDR 383 (608)
Q Consensus 304 ~fD~d~dG~ls~~El~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~~~~~~~~~~~~~l~y~g~~~~~~ 383 (608)
+||.|+||.|+++||..+|+++| ..||...........+..|+++|++|+++|+|||++||.+|++||+|+||+.. .
T Consensus 323 ~~D~d~Dg~L~p~El~~LF~~~P--~~pW~~~~~~~~t~~~~~G~ltl~g~l~~WsL~Tlld~~~t~~~L~Ylgf~~~-~ 399 (625)
T KOG1707|consen 323 KFDRDNDGALSPEELKDLFSTAP--GSPWTSSPYKDSTVKNERGWLTLNGFLSQWSLMTLLDPRRTLEYLAYLGFPTD-A 399 (625)
T ss_pred hccCCCCCCcCHHHHHHHhhhCC--CCCCCCCcccccceecccceeehhhHHHHHHHHhhccHHHHHHHHHhcCCccc-c
Confidence 99999999999999999999999 99997666666777779999999999999999999999999999999999932 2
Q ss_pred CCCceeeEecchhhhhhhcccCCCceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecceEeCCcce
Q psy3301 384 ENQTSGVLVTREKQVDLLKKQTTRNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINTTTVYGQEK 463 (608)
Q Consensus 384 ~~~~~a~~vtr~~~~~~~~~~~~r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~~~v~Gqe~ 463 (608)
++|++|++|||.|+.++++++++|+||+|+|+|+.++|||+||++|+++.+...+ +... ...+++|.+.+.|+++
T Consensus 400 ~~~~~ai~vtRkr~~d~~~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~--~~~~---~~~~avn~v~~~g~~k 474 (625)
T KOG1707|consen 400 GSQASAIRVTRKRKLDRKKKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNN--TGTT---KPRYAVNSVEVKGQQK 474 (625)
T ss_pred cccccceehhhhhhhhhccccccceeeeEEEEcCCcCchHHHHHHHhcccccccc--ccCC---CCceeeeeeeeccccc
Confidence 3899999999999999999999999999999999999999999999999998854 3444 7899999999999999
Q ss_pred eEeeeecccccccccCCCCcccccc----------------------cccCCCCCcEEEEEeCCCCCcchhcccccHHHH
Q psy3301 464 YLVLKEILVRDEQLPVLLPVDVDCD----------------------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIF 521 (608)
Q Consensus 464 ~~~l~~~~~~~v~d~~l~~~~~~~~----------------------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~ 521 (608)
|++|+++... ..+ .+++.+..|| +++....+||++|++|+||++..|+++.++.+|
T Consensus 475 ~LiL~ei~~~-~~~-~l~~ke~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~~~~Pc~~va~K~dlDe~~Q~~~iqpde~ 552 (625)
T KOG1707|consen 475 YLILREIGED-DQD-FLTSKEAACDVACLVYDSSNPRSFEYLAEVYNKYFDLYKIPCLMVATKADLDEVPQRYSIQPDEF 552 (625)
T ss_pred eEEEeecCcc-ccc-cccCccceeeeEEEecccCCchHHHHHHHHHHHhhhccCCceEEEeeccccchhhhccCCChHHH
Confidence 9999999875 333 3444555555 444568999999999999999999999999999
Q ss_pred HHHcCCCCceEEccC-CCHHHHHHHHHHHHcCCCCCCcccccCCCcccccccccccCchhHHHH--HHHHHHHHHHHHHH
Q psy3301 522 CETHKLSPAHSFSAA-NNDREVFVKLATMAAFPRFHPAWMLFYPDLTSHFYMFNLHDNKAYLWK--TGLSVAVITLLGII 598 (608)
Q Consensus 522 ~~~~~~~~~~~~S~~-~~v~e~F~~l~~~a~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~ 598 (608)
|+++++++|.++|+. .+-.++|.+|+.+|.+|| +|+++++.++ .|.+ ++..+|+++++|+.
T Consensus 553 ~~~~~i~~P~~~S~~~~~s~~lf~kL~~~A~~Ph--------~~~~~~~~~~--------~~~~~l~~~~~g~~~~~g~~ 616 (625)
T KOG1707|consen 553 CRQLGLPPPIHISSKTLSSNELFIKLATMAQYPH--------IPRIEEEKSS--------LQNRLLMAVSGGAVAVAGLA 616 (625)
T ss_pred HHhcCCCCCeeeccCCCCCchHHHHHHHhhhCCC--------ccccccccch--------hhHHHHHHHHHHHHHHhhHH
Confidence 999999999999932 444999999999999999 5666555322 3322 23333499999999
Q ss_pred HHHHhCCCC
Q psy3301 599 FAKFLRPPR 607 (608)
Q Consensus 599 ~~~~~~~~~ 607 (608)
.||..+.++
T Consensus 617 ~~~~~~~~k 625 (625)
T KOG1707|consen 617 LYKLYKARK 625 (625)
T ss_pred HHhhhhccC
Confidence 999987653
No 2
>KOG0092|consensus
Probab=99.95 E-value=3e-28 Score=219.23 Aligned_cols=150 Identities=27% Similarity=0.408 Sum_probs=131.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCc--ceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAE--EITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVIC 85 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 85 (608)
...+||+|+|+.+||||||+.|++.+.|.++..++.. -.+....+....+++.||||+|+|+|+...+.|+|+|+++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 3578999999999999999999999999997555543 23445556667899999999999999999999999999999
Q ss_pred EEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHH
Q psy3301 86 LVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFY 148 (608)
Q Consensus 86 lV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~ 148 (608)
+|||+++.+||..++ .|+..++.. ..+++-|.|||||+||.+.+. +|+|||+|.||+++|.
T Consensus 83 vvYDit~~~SF~~aK-~WvkeL~~~-~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~ 160 (200)
T KOG0092|consen 83 VVYDITDEESFEKAK-NWVKELQRQ-ASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQ 160 (200)
T ss_pred EEEecccHHHHHHHH-HHHHHHHhh-CCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHH
Confidence 999999999999999 899999974 447788889999999998544 9999999999999999
Q ss_pred HHHHHHhCCCC
Q psy3301 149 YAQKAVLHPMA 159 (608)
Q Consensus 149 ~l~~~i~~~~~ 159 (608)
.+.+.+.....
T Consensus 161 ~Ia~~lp~~~~ 171 (200)
T KOG0092|consen 161 AIAEKLPCSDP 171 (200)
T ss_pred HHHHhccCccc
Confidence 99999865443
No 3
>KOG0084|consensus
Probab=99.95 E-value=5.6e-28 Score=218.27 Aligned_cols=151 Identities=25% Similarity=0.366 Sum_probs=132.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcce--EecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcE
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEI--TIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVI 84 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 84 (608)
...-+||+|+|++|||||+|+.||..+.|.+.+..+...+ .....+.++.++++||||+|||+|+.+...+|++|++|
T Consensus 6 ~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGi 85 (205)
T KOG0084|consen 6 YDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 85 (205)
T ss_pred cceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeE
Confidence 4456899999999999999999999999998866655333 22445677889999999999999999999999999999
Q ss_pred EEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC------------------cccCcccCcCHHHH
Q psy3301 85 CLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST------------------VESSAKTLKNISEM 146 (608)
Q Consensus 85 ilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~------------------~e~SAk~~~~i~~l 146 (608)
|+|||+++.+||+.+. .|+.+++. ....++|.+|||||+|+.+... +|+|||++.||++.
T Consensus 86 i~vyDiT~~~SF~~v~-~Wi~Ei~~-~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~ 163 (205)
T KOG0084|consen 86 IFVYDITKQESFNNVK-RWIQEIDR-YASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDA 163 (205)
T ss_pred EEEEEcccHHHhhhHH-HHHHHhhh-hccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHH
Confidence 9999999999999999 89999998 4667889999999999987654 79999999999999
Q ss_pred HHHHHHHHhCCCC
Q psy3301 147 FYYAQKAVLHPMA 159 (608)
Q Consensus 147 f~~l~~~i~~~~~ 159 (608)
|..+...+.....
T Consensus 164 F~~la~~lk~~~~ 176 (205)
T KOG0084|consen 164 FLTLAKELKQRKG 176 (205)
T ss_pred HHHHHHHHHHhcc
Confidence 9999998865433
No 4
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.95 E-value=3.1e-26 Score=248.00 Aligned_cols=115 Identities=17% Similarity=0.170 Sum_probs=84.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCc-CCCCCcceEecCccCCCceeEEEEeCCCCCC--------ChHHHHHHH
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPEL-VPSKAEEITIPPDVTPEMVPTHIVDYSEVDQ--------TVDELTEEI 78 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~~~ 78 (608)
....+|+|+|.+|||||||+++|++...... ..+..+...+...+...+..+.+|||+|.+. +......++
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 4457999999999999999999999875432 2333344444444445567799999999763 223345678
Q ss_pred HhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCC
Q psy3301 79 QKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLV 128 (608)
Q Consensus 79 ~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 128 (608)
+.||++|+|||+++..++... .|...++. .++|+++|+||+|+.
T Consensus 116 ~~aD~il~VvD~~~~~s~~~~--~i~~~l~~----~~~piilV~NK~Dl~ 159 (472)
T PRK03003 116 RTADAVLFVVDATVGATATDE--AVARVLRR----SGKPVILAANKVDDE 159 (472)
T ss_pred HhCCEEEEEEECCCCCCHHHH--HHHHHHHH----cCCCEEEEEECccCC
Confidence 999999999999998765432 45555552 478999999999974
No 5
>KOG0094|consensus
Probab=99.94 E-value=6.1e-27 Score=210.34 Aligned_cols=150 Identities=25% Similarity=0.358 Sum_probs=130.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecC--ccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEE
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPP--DVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICL 86 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iil 86 (608)
+.+||+++|+.+|||||||+|++.+.|..++.++...+-... .+....+.+++|||+|||+|+.++..|++++.++|+
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi 100 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 100 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence 459999999999999999999999999998888765443333 345567889999999999999999999999999999
Q ss_pred EEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHH
Q psy3301 87 VYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYY 149 (608)
Q Consensus 87 V~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~ 149 (608)
|||+++..||++.. +|++.++......++-|+|||||.||.+.+. +++||+.|.||.++|..
T Consensus 101 VyDit~~~Sfe~t~-kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrr 179 (221)
T KOG0094|consen 101 VYDITDRNSFENTS-KWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRR 179 (221)
T ss_pred EEeccccchHHHHH-HHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHH
Confidence 99999999999998 9999999743333578889999999998765 89999999999999999
Q ss_pred HHHHHhCCCC
Q psy3301 150 AQKAVLHPMA 159 (608)
Q Consensus 150 l~~~i~~~~~ 159 (608)
+..++.....
T Consensus 180 Iaa~l~~~~~ 189 (221)
T KOG0094|consen 180 IAAALPGMEV 189 (221)
T ss_pred HHHhccCccc
Confidence 8887765433
No 6
>KOG0078|consensus
Probab=99.94 E-value=1.8e-26 Score=212.02 Aligned_cols=149 Identities=26% Similarity=0.350 Sum_probs=130.8
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcce--EecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCc
Q psy3301 6 SLRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEI--TIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHV 83 (608)
Q Consensus 6 ~~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 83 (608)
.....+||+++|++|||||+|+.||..+.|...+..+...+ .....+++..+.+++|||+|+++|+.+...|++.|++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 45567999999999999999999999999987755544322 2233456678899999999999999999999999999
Q ss_pred EEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHH
Q psy3301 84 ICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEM 146 (608)
Q Consensus 84 iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~l 146 (608)
+++|||+++..||+++. .|+..+.+ .....+|++|||||+|+...+. +|+|||+|.||.++
T Consensus 88 i~LvyDitne~Sfeni~-~W~~~I~e-~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~ea 165 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIR-NWIKNIDE-HASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEA 165 (207)
T ss_pred eEEEEEccchHHHHHHH-HHHHHHHh-hCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHH
Confidence 99999999999999999 69999997 4556999999999999998654 99999999999999
Q ss_pred HHHHHHHHhC
Q psy3301 147 FYYAQKAVLH 156 (608)
Q Consensus 147 f~~l~~~i~~ 156 (608)
|..+.+.+..
T Consensus 166 F~~La~~i~~ 175 (207)
T KOG0078|consen 166 FLSLARDILQ 175 (207)
T ss_pred HHHHHHHHHh
Confidence 9999999975
No 7
>PF08356 EF_assoc_2: EF hand associated; InterPro: IPR013567 This region predominantly appears near EF-hands (IPR002048 from INTERPRO) in GTP-binding proteins. It is found in all three eukaryotic kingdoms.
Probab=99.94 E-value=4.6e-27 Score=187.57 Aligned_cols=88 Identities=57% Similarity=1.020 Sum_probs=85.2
Q ss_pred CCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHHHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCC
Q psy3301 207 APLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATC 286 (608)
Q Consensus 207 ~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~ 286 (608)
.++++++++.|++.+.+.+|+|+. +++||.+||+.|+++|+++|||||||+|||+|||+|+|+|.++||+|.++||++|
T Consensus 2 ~pL~~~el~~ik~~v~~~~~~gv~-~~GiT~~GFl~L~~lfierGR~ETtW~vLR~FgY~d~L~L~d~~l~p~l~v~~~~ 80 (89)
T PF08356_consen 2 KPLQPQELEDIKKVVRENIPDGVN-DNGITLDGFLFLNKLFIERGRHETTWTVLRKFGYDDDLSLSDDFLYPKLDVPPDQ 80 (89)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcC-CCccchhhHHHHHHHHHHhCcchHHHHHHHHcCCCCcceeccccCCCCccCCCCC
Confidence 578999999999999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCHhHH
Q psy3301 287 TAELSDKGQ 295 (608)
Q Consensus 287 ~~eLs~~~~ 295 (608)
++|||+.|+
T Consensus 81 svELS~~gy 89 (89)
T PF08356_consen 81 SVELSPEGY 89 (89)
T ss_pred eeecCcCcC
Confidence 999999864
No 8
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.93 E-value=7.9e-26 Score=212.33 Aligned_cols=145 Identities=30% Similarity=0.447 Sum_probs=124.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcc-eEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEE
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEE-ITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYS 89 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d 89 (608)
+||+++|++|||||||+.+++.+.|..++.++... ......++...+.+.||||+|++++......++++||++|+|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 69999999999999999999999998776665532 22233455667899999999999999999999999999999999
Q ss_pred cCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCC-----------C-----------------cccCcccCc
Q psy3301 90 VVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYS-----------T-----------------VESSAKTLK 141 (608)
Q Consensus 90 ~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-----------~-----------------~e~SAk~~~ 141 (608)
+++++||+++...|++.+.. ...++|++|||||+|+.+.. . +||||++|.
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~--~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 82 LISRASYENVLKKWVPELRH--YAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHH--hCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 99999999985589999984 34589999999999996531 1 899999999
Q ss_pred CHHHHHHHHHHHHhCC
Q psy3301 142 NISEMFYYAQKAVLHP 157 (608)
Q Consensus 142 ~i~~lf~~l~~~i~~~ 157 (608)
||+++|..+++.+.+|
T Consensus 160 nV~~~F~~~~~~~~~~ 175 (176)
T cd04133 160 NVKAVFDAAIKVVLQP 175 (176)
T ss_pred CHHHHHHHHHHHHhcC
Confidence 9999999999988654
No 9
>KOG0080|consensus
Probab=99.93 E-value=3.7e-26 Score=197.85 Aligned_cols=149 Identities=28% Similarity=0.337 Sum_probs=129.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcc--eEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEE
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEE--ITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICL 86 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iil 86 (608)
..+||+++|++|||||||+.+|+.+.|.+..+.+..- ......+++..+++-||||+|+|+|+.+...+++.|.++|+
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIl 89 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIIL 89 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEE
Confidence 4689999999999999999999999998875553322 12234467788999999999999999999999999999999
Q ss_pred EEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHH
Q psy3301 87 VYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYY 149 (608)
Q Consensus 87 V~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~ 149 (608)
|||++.+++|.++. .|+.++..+...+++-.++||||+|..+.+. +|||||+.+||+.+|+.
T Consensus 90 VYDVT~Rdtf~kLd-~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~Fee 168 (209)
T KOG0080|consen 90 VYDVTSRDTFVKLD-IWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFEE 168 (209)
T ss_pred EEEccchhhHHhHH-HHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHH
Confidence 99999999999995 9999999776677788899999999875543 99999999999999999
Q ss_pred HHHHHhCCC
Q psy3301 150 AQKAVLHPM 158 (608)
Q Consensus 150 l~~~i~~~~ 158 (608)
+...++...
T Consensus 169 lveKIi~tp 177 (209)
T KOG0080|consen 169 LVEKIIETP 177 (209)
T ss_pred HHHHHhcCc
Confidence 999997643
No 10
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.93 E-value=1.4e-25 Score=214.29 Aligned_cols=148 Identities=24% Similarity=0.389 Sum_probs=126.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcce-EecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEE
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEI-TIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLV 87 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV 87 (608)
..+||+++|++|||||||+.+++.+.|...+.++.... .....++...+.+.||||+|+++|...+..++++||++|+|
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 45899999999999999999999999987766665332 22334566678999999999999999999999999999999
Q ss_pred EEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCC----------------------------C--cccCc
Q psy3301 88 YSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYS----------------------------T--VESSA 137 (608)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~----------------------------~--~e~SA 137 (608)
||+++++||+++...|.+.+.. ...++|++|||||+||.+.. . +||||
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~--~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA 159 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCH--HCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA 159 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHh--hCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence 9999999999998679988874 34689999999999996431 0 89999
Q ss_pred ccCcCHHHHHHHHHHHHhCCC
Q psy3301 138 KTLKNISEMFYYAQKAVLHPM 158 (608)
Q Consensus 138 k~~~~i~~lf~~l~~~i~~~~ 158 (608)
++|.||+++|+++++.+.+|.
T Consensus 160 k~g~~v~e~f~~l~~~~~~~~ 180 (191)
T cd01875 160 LNQDGVKEVFAEAVRAVLNPT 180 (191)
T ss_pred CCCCCHHHHHHHHHHHHhccc
Confidence 999999999999999998865
No 11
>KOG0098|consensus
Probab=99.93 E-value=7.6e-26 Score=201.53 Aligned_cols=146 Identities=24% Similarity=0.336 Sum_probs=128.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcce--EecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEE
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEI--TIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICL 86 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iil 86 (608)
..+|++++|+.|||||+|+.+++...|.+..+.+.... .....++...++++||||+|+|.|......+++.|.++|+
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalL 84 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALL 84 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEE
Confidence 46899999999999999999999999988655443221 2233457788999999999999999999999999999999
Q ss_pred EEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHH
Q psy3301 87 VYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYY 149 (608)
Q Consensus 87 V~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~ 149 (608)
|||+++++||.++. .|+..+++ ...+|+-++|+|||+||...+. .|+||++++||+|+|..
T Consensus 85 Vydit~r~sF~hL~-~wL~D~rq-~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~n 162 (216)
T KOG0098|consen 85 VYDITRRESFNHLT-SWLEDARQ-HSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFIN 162 (216)
T ss_pred EEEccchhhHHHHH-HHHHHHHH-hcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHH
Confidence 99999999999999 89999997 5678999999999999987665 89999999999999999
Q ss_pred HHHHHhC
Q psy3301 150 AQKAVLH 156 (608)
Q Consensus 150 l~~~i~~ 156 (608)
..+.+++
T Consensus 163 ta~~Iy~ 169 (216)
T KOG0098|consen 163 TAKEIYR 169 (216)
T ss_pred HHHHHHH
Confidence 9888865
No 12
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.93 E-value=1.7e-25 Score=211.48 Aligned_cols=146 Identities=19% Similarity=0.291 Sum_probs=124.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCc-ceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAE-EITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICL 86 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iil 86 (608)
+..+||+++|++|||||||+++++.+.|...+.|+.. .......++...+.+.||||+|+++|......+++++|++++
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il 82 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 82 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence 3468999999999999999999999999887666653 233344566777899999999999999988999999999999
Q ss_pred EEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCC-----------C-C------------------cccC
Q psy3301 87 VYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDY-----------S-T------------------VESS 136 (608)
Q Consensus 87 V~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~-----------~-~------------------~e~S 136 (608)
|||++++.||+++...|++.++. ..++.|++|||||+||... . . +|||
T Consensus 83 vyDit~~~Sf~~~~~~w~~~i~~--~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S 160 (182)
T cd04172 83 CFDISRPETLDSVLKKWKGEIQE--FCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 160 (182)
T ss_pred EEECCCHHHHHHHHHHHHHHHHH--HCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence 99999999999985589999985 3467999999999998641 1 1 8999
Q ss_pred cccCcC-HHHHHHHHHHHHh
Q psy3301 137 AKTLKN-ISEMFYYAQKAVL 155 (608)
Q Consensus 137 Ak~~~~-i~~lf~~l~~~i~ 155 (608)
|++|.| |+++|..+++.++
T Consensus 161 Ak~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 161 ALQSENSVRDIFHVATLACV 180 (182)
T ss_pred cCCCCCCHHHHHHHHHHHHh
Confidence 999998 9999999999754
No 13
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.93 E-value=3.5e-25 Score=210.34 Aligned_cols=146 Identities=24% Similarity=0.255 Sum_probs=124.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcce--EecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEI--TIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVIC 85 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 85 (608)
...+||+++|+.|||||||+.++..+.+...+.++.... .....++...+.+.+|||+|+++|...+..+++.+|++|
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 356899999999999999999999998877655543322 222344566789999999999999999999999999999
Q ss_pred EEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHH
Q psy3301 86 LVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFY 148 (608)
Q Consensus 86 lV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~ 148 (608)
+|||++++.||+.+. .|++.+.. ..+++|+||||||+|+..... ++|||++|.||+++|+
T Consensus 84 lVfD~t~~~Sf~~~~-~w~~~i~~--~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~ 160 (189)
T cd04121 84 LVYDITNRWSFDGID-RWIKEIDE--HAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFT 160 (189)
T ss_pred EEEECcCHHHHHHHH-HHHHHHHH--hCCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHH
Confidence 999999999999997 89999974 346899999999999975432 9999999999999999
Q ss_pred HHHHHHhC
Q psy3301 149 YAQKAVLH 156 (608)
Q Consensus 149 ~l~~~i~~ 156 (608)
++++.+..
T Consensus 161 ~l~~~i~~ 168 (189)
T cd04121 161 ELARIVLM 168 (189)
T ss_pred HHHHHHHH
Confidence 99998864
No 14
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.93 E-value=3.7e-25 Score=212.14 Aligned_cols=144 Identities=24% Similarity=0.364 Sum_probs=123.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceE--ecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEE
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEIT--IPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVY 88 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~ 88 (608)
+.|+++|+.|||||||++++..+.|...+.++.+... ....+.+..+.+.||||+|+++|...+..++++||++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 3689999999999999999999999887666654322 23345556789999999999999999999999999999999
Q ss_pred EcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC------------------cccCcccCcCHHHHHHHH
Q psy3301 89 SVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST------------------VESSAKTLKNISEMFYYA 150 (608)
Q Consensus 89 d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~------------------~e~SAk~~~~i~~lf~~l 150 (608)
|+++++||+.+. .|+..+.. ....++|++|||||+|+...+. ++|||++|.||+++|.++
T Consensus 81 Dvtd~~Sf~~l~-~w~~~i~~-~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l 158 (202)
T cd04120 81 DITKKETFDDLP-KWMKMIDK-YASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKL 158 (202)
T ss_pred ECcCHHHHHHHH-HHHHHHHH-hCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHH
Confidence 999999999998 79998875 3456799999999999964332 799999999999999999
Q ss_pred HHHHhC
Q psy3301 151 QKAVLH 156 (608)
Q Consensus 151 ~~~i~~ 156 (608)
++.+..
T Consensus 159 ~~~~~~ 164 (202)
T cd04120 159 VDDILK 164 (202)
T ss_pred HHHHHH
Confidence 988754
No 15
>KOG0079|consensus
Probab=99.93 E-value=7.3e-26 Score=193.22 Aligned_cols=147 Identities=27% Similarity=0.377 Sum_probs=130.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcce--EecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcE
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEI--TIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVI 84 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 84 (608)
+..-++.+|+|++|||||||+.++..+.|...+..++.-+ ...+++.+..+++.||||+|+|+|+.+...+++..+++
T Consensus 5 ~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv 84 (198)
T KOG0079|consen 5 YDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGV 84 (198)
T ss_pred HHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceE
Confidence 3445788999999999999999999999998866554322 22456678899999999999999999999999999999
Q ss_pred EEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHH
Q psy3301 85 CLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMF 147 (608)
Q Consensus 85 ilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf 147 (608)
|+|||+++.+||.+++ +|++.++ .....+|-++||||.|+++++. +|+|||.+.|++..|
T Consensus 85 ~vVYDVTn~ESF~Nv~-rWLeei~--~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF 161 (198)
T KOG0079|consen 85 IVVYDVTNGESFNNVK-RWLEEIR--NNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMF 161 (198)
T ss_pred EEEEECcchhhhHhHH-HHHHHHH--hcCccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHH
Confidence 9999999999999999 9999999 5677999999999999988765 999999999999999
Q ss_pred HHHHHHHhC
Q psy3301 148 YYAQKAVLH 156 (608)
Q Consensus 148 ~~l~~~i~~ 156 (608)
.-+.++++.
T Consensus 162 ~cit~qvl~ 170 (198)
T KOG0079|consen 162 HCITKQVLQ 170 (198)
T ss_pred HHHHHHHHH
Confidence 999998864
No 16
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.92 E-value=8.1e-25 Score=213.29 Aligned_cols=149 Identities=21% Similarity=0.287 Sum_probs=126.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCC-cceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEE
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKA-EEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLV 87 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV 87 (608)
..+||+++|++|||||||+.+|+.+.|...+.++. ...+....+....+.+.||||+|++.|......++++||++|+|
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlV 91 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLC 91 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEE
Confidence 46899999999999999999999999988766654 33344445667789999999999999999899999999999999
Q ss_pred EEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCC------------CC------------------cccCc
Q psy3301 88 YSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDY------------ST------------------VESSA 137 (608)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~------------------~e~SA 137 (608)
||+++++||+.+...|++.+.. ..++.|+||||||+|+... .. +||||
T Consensus 92 yDit~~~Sf~~~~~~w~~~i~~--~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSA 169 (232)
T cd04174 92 FDISRPETVDSALKKWKAEIMD--YCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSA 169 (232)
T ss_pred EECCChHHHHHHHHHHHHHHHH--hCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccC
Confidence 9999999999865589999984 3457899999999999641 11 79999
Q ss_pred ccCc-CHHHHHHHHHHHHhCCCC
Q psy3301 138 KTLK-NISEMFYYAQKAVLHPMA 159 (608)
Q Consensus 138 k~~~-~i~~lf~~l~~~i~~~~~ 159 (608)
++|. ||+++|..+++.++....
T Consensus 170 ktg~~~V~e~F~~~~~~~~~~~~ 192 (232)
T cd04174 170 FTSEKSIHSIFRSASLLCLNKLS 192 (232)
T ss_pred CcCCcCHHHHHHHHHHHHHHhcc
Confidence 9997 899999999998876433
No 17
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.92 E-value=5.5e-25 Score=207.48 Aligned_cols=144 Identities=20% Similarity=0.297 Sum_probs=121.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcc-eEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEE
Q psy3301 10 NVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEE-ITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVY 88 (608)
Q Consensus 10 ~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~ 88 (608)
.+||+++|++|||||||+++++++.|...+.++... ......++...+.+.||||+|++.+......+++.+|++|+||
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 379999999999999999999999998776665432 2333445667789999999999999888889999999999999
Q ss_pred EcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCC------------CC------------------cccCcc
Q psy3301 89 SVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDY------------ST------------------VESSAK 138 (608)
Q Consensus 89 d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~------------------~e~SAk 138 (608)
|+++++||+++...|++.++. ..++.|++|||||+||... .. +||||+
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~--~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQE--FCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHH--HCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 999999999975589999985 3468999999999999641 11 899999
Q ss_pred cCcC-HHHHHHHHHHHHh
Q psy3301 139 TLKN-ISEMFYYAQKAVL 155 (608)
Q Consensus 139 ~~~~-i~~lf~~l~~~i~ 155 (608)
+|.| |+++|..+.++.+
T Consensus 159 ~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 159 TSEKSVRDIFHVATMACL 176 (178)
T ss_pred cCCcCHHHHHHHHHHHHh
Confidence 9995 9999999998654
No 18
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.92 E-value=6.7e-25 Score=206.56 Aligned_cols=143 Identities=24% Similarity=0.366 Sum_probs=121.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcc-eEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEE
Q psy3301 10 NVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEE-ITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVY 88 (608)
Q Consensus 10 ~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~ 88 (608)
.+||+++|++|||||||+++++.+.|..++.|+... ......+....+.+.||||+|++++...+..+++.+|++|+||
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 379999999999999999999999997776666532 2223344556688999999999999888888999999999999
Q ss_pred EcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCC----------------------------C--cccCcc
Q psy3301 89 SVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYS----------------------------T--VESSAK 138 (608)
Q Consensus 89 d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~----------------------------~--~e~SAk 138 (608)
|+++++||+.+...|++.+.. ...++|+||||||+|+.... . +||||+
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~--~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~ 158 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITH--HCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL 158 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHH--hCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence 999999999998679998874 34679999999999986430 0 999999
Q ss_pred cCcCHHHHHHHHHHHH
Q psy3301 139 TLKNISEMFYYAQKAV 154 (608)
Q Consensus 139 ~~~~i~~lf~~l~~~i 154 (608)
+|.|++++|+.+++++
T Consensus 159 tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 159 TQKGLKNVFDEAILAA 174 (175)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999999865
No 19
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.92 E-value=1.4e-24 Score=210.70 Aligned_cols=149 Identities=19% Similarity=0.277 Sum_probs=127.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCC-cceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEE
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPELVPSKA-EEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYS 89 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d 89 (608)
+||+|+|++|||||||+.+|..+.|...+.|+. ........++...+.+.||||+|++.|......+++.+|++|+|||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfd 81 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFD 81 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEE
Confidence 799999999999999999999999988766654 3333344566777899999999999999989999999999999999
Q ss_pred cCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCC--------------CC----------------cccCccc
Q psy3301 90 VVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDY--------------ST----------------VESSAKT 139 (608)
Q Consensus 90 ~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~--------------~~----------------~e~SAk~ 139 (608)
+++++||+.+...|.+.+. ...+++|+||||||+|+... .. +||||++
T Consensus 82 is~~~Sf~~i~~~w~~~~~--~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 82 ISRPETLDSVLKKWQGETQ--EFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred CCCHHHHHHHHHHHHHHHH--hhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 9999999999778998887 45678999999999999652 00 8999999
Q ss_pred CcC-HHHHHHHHHHHHhCCCCCc
Q psy3301 140 LKN-ISEMFYYAQKAVLHPMAPI 161 (608)
Q Consensus 140 ~~~-i~~lf~~l~~~i~~~~~~l 161 (608)
+.| |+++|+.++++++.+..+.
T Consensus 160 ~~~~V~~~F~~~~~~~~~~~~~~ 182 (222)
T cd04173 160 SERSVRDVFHVATVASLGRGHRQ 182 (222)
T ss_pred CCcCHHHHHHHHHHHHHhccCCc
Confidence 985 9999999999887655443
No 20
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.92 E-value=1.7e-24 Score=203.29 Aligned_cols=146 Identities=23% Similarity=0.344 Sum_probs=124.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCc-ceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEE
Q psy3301 10 NVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAE-EITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVY 88 (608)
Q Consensus 10 ~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~ 88 (608)
.+||+++|++|||||||+++++.+.|...+.++.. .......++...+.+.||||+|++++...+..+++.+|++|+||
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~ 81 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY 81 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence 57999999999999999999999999876655543 23334455666788999999999999999999999999999999
Q ss_pred EcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHHHH
Q psy3301 89 SVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYYAQ 151 (608)
Q Consensus 89 d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~l~ 151 (608)
|++++.||+.+. .|...+.......++|+++||||+|+..... ++|||++|.||+++|.++.
T Consensus 82 d~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~ 160 (172)
T cd04141 82 SVTDRHSFQEAS-EFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV 160 (172)
T ss_pred ECCchhHHHHHH-HHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence 999999999998 6887777533446799999999999865432 8999999999999999999
Q ss_pred HHHhC
Q psy3301 152 KAVLH 156 (608)
Q Consensus 152 ~~i~~ 156 (608)
+.+..
T Consensus 161 ~~~~~ 165 (172)
T cd04141 161 REIRR 165 (172)
T ss_pred HHHHH
Confidence 88764
No 21
>KOG0394|consensus
Probab=99.92 E-value=2.8e-25 Score=197.59 Aligned_cols=152 Identities=26% Similarity=0.319 Sum_probs=129.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCc--ceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcE
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAE--EITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVI 84 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 84 (608)
.+.-+||+++|++|||||||+++++..+|...+..+.. -.+....++...+.++||||+|+|+|..+-..+++.||+.
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC 85 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC 85 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence 34568999999999999999999999999887666543 2344445567778899999999999999999999999999
Q ss_pred EEEEEcCChhhHHHHHHhHHHHHhhh---ccCCCCcEEEEEeCcCCCCCCC--------------------cccCcccCc
Q psy3301 85 CLVYSVVDDASIDRLSSHWLPFLRNC---LVDTCLPIVLVGNKVDLVDYST--------------------VESSAKTLK 141 (608)
Q Consensus 85 ilV~d~~~~~s~~~~~~~~~~~i~~~---~~~~~~piilv~nK~Dl~~~~~--------------------~e~SAk~~~ 141 (608)
++|||+++++||+.+. .|..++... ......|.||+|||+|+..... +|+|||...
T Consensus 86 vlvydv~~~~Sfe~L~-~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~ 164 (210)
T KOG0394|consen 86 VLVYDVNNPKSFENLE-NWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEAT 164 (210)
T ss_pred EEEeecCChhhhccHH-HHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccc
Confidence 9999999999999998 899887655 2335679999999999976331 999999999
Q ss_pred CHHHHHHHHHHHHhCCCC
Q psy3301 142 NISEMFYYAQKAVLHPMA 159 (608)
Q Consensus 142 ~i~~lf~~l~~~i~~~~~ 159 (608)
||.++|..+.+.++..+.
T Consensus 165 NV~~AFe~ia~~aL~~E~ 182 (210)
T KOG0394|consen 165 NVDEAFEEIARRALANED 182 (210)
T ss_pred cHHHHHHHHHHHHHhccc
Confidence 999999999999987443
No 22
>KOG0084|consensus
Probab=99.92 E-value=1.2e-25 Score=203.12 Aligned_cols=147 Identities=17% Similarity=0.208 Sum_probs=126.9
Q ss_pred CCceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecceEe-------CCcceeEeeeeccccc----
Q psy3301 406 TRNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINTTTV-------YGQEKYLVLKEILVRD---- 474 (608)
Q Consensus 406 ~r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~~~v-------~Gqe~~~~l~~~~~~~---- 474 (608)
..+.||++|||++|||||||+.||.++.|...|..|+|+++-...+.+++..+ +|||||+.+...|||+
T Consensus 6 ~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGi 85 (205)
T KOG0084|consen 6 YDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 85 (205)
T ss_pred cceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeE
Confidence 35789999999999999999999999999999999998833335566655443 9999999999999999
Q ss_pred --ccccCCCCcc--ccccc------ccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHH
Q psy3301 475 --EQLPVLLPVD--VDCDK------YFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREV 542 (608)
Q Consensus 475 --v~d~~l~~~~--~~~~~------~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~ 542 (608)
||| +++.+ .++++ .+...++|.+|||||+||.+.++++.+++++|+.++++++++++| .+.||+++
T Consensus 86 i~vyD--iT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~ 163 (205)
T KOG0084|consen 86 IFVYD--ITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDA 163 (205)
T ss_pred EEEEE--cccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHH
Confidence 899 99877 44443 334688999999999999999999999999999999998889999 78899999
Q ss_pred HHHHHHHHcCCC
Q psy3301 543 FVKLATMAAFPR 554 (608)
Q Consensus 543 F~~l~~~a~~p~ 554 (608)
|..|+......+
T Consensus 164 F~~la~~lk~~~ 175 (205)
T KOG0084|consen 164 FLTLAKELKQRK 175 (205)
T ss_pred HHHHHHHHHHhc
Confidence 999998776544
No 23
>KOG0087|consensus
Probab=99.92 E-value=1.1e-24 Score=198.84 Aligned_cols=147 Identities=27% Similarity=0.354 Sum_probs=131.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCC--cceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKA--EEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVIC 85 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 85 (608)
..-+||+++|++|||||-|+.|+..++|..+...+. +..+....++.+.++.+||||+|||+|+.....+++.|.+++
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAl 91 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 91 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeE
Confidence 346899999999999999999999999998755543 444666678888999999999999999999999999999999
Q ss_pred EEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHH
Q psy3301 86 LVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFY 148 (608)
Q Consensus 86 lV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~ 148 (608)
+|||++.+.+|+++. +|+.+++. ...++++|+|||||+||.+.+. +|+||..+.|++++|.
T Consensus 92 lVYDITr~~Tfenv~-rWL~ELRd-had~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~ 169 (222)
T KOG0087|consen 92 LVYDITRRQTFENVE-RWLKELRD-HADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFE 169 (222)
T ss_pred EEEechhHHHHHHHH-HHHHHHHh-cCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHHH
Confidence 999999999999998 99999998 5778999999999999987443 9999999999999999
Q ss_pred HHHHHHhC
Q psy3301 149 YAQKAVLH 156 (608)
Q Consensus 149 ~l~~~i~~ 156 (608)
.+...+..
T Consensus 170 ~~l~~I~~ 177 (222)
T KOG0087|consen 170 RVLTEIYK 177 (222)
T ss_pred HHHHHHHH
Confidence 98888864
No 24
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.91 E-value=4.2e-24 Score=199.48 Aligned_cols=144 Identities=26% Similarity=0.347 Sum_probs=122.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcce--EecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEE
Q psy3301 10 NVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEI--TIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLV 87 (608)
Q Consensus 10 ~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV 87 (608)
.+||+++|++|||||||++++.++.|...++++.... .....+....+.+.+|||+|++++...+..+++++|++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 3799999999999999999999999887766654322 22334566678899999999999999999999999999999
Q ss_pred EEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHHH
Q psy3301 88 YSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYYA 150 (608)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~l 150 (608)
||+++++||+.+. .|+..+.. ...++.|+++||||+|+..... ++|||++|.||+++|..+
T Consensus 82 ~d~~~~~s~~~~~-~~~~~~~~-~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l 159 (166)
T cd04122 82 YDITRRSTYNHLS-SWLTDARN-LTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLET 159 (166)
T ss_pred EECCCHHHHHHHH-HHHHHHHH-hCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 9999999999998 89888765 3456789999999999976532 899999999999999999
Q ss_pred HHHHh
Q psy3301 151 QKAVL 155 (608)
Q Consensus 151 ~~~i~ 155 (608)
.+.+.
T Consensus 160 ~~~~~ 164 (166)
T cd04122 160 AKKIY 164 (166)
T ss_pred HHHHh
Confidence 88774
No 25
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.91 E-value=6.4e-24 Score=198.28 Aligned_cols=145 Identities=63% Similarity=0.944 Sum_probs=125.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEc
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSV 90 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~ 90 (608)
+||+++|++|||||||+++|.++.+...++++.+..++...+....+.+.+|||+|.+.+...+..+++.+|++++|||+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSV 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEEC
Confidence 48999999999999999999999997766655555566666677789999999999998888888889999999999999
Q ss_pred CChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC---------------------cccCcccCcCHHHHHHH
Q psy3301 91 VDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST---------------------VESSAKTLKNISEMFYY 149 (608)
Q Consensus 91 ~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~---------------------~e~SAk~~~~i~~lf~~ 149 (608)
+++.+|+.+...|++.++. ...++|+++|+||+|+.+... ++|||++|.|++++|+.
T Consensus 81 ~~~~s~~~~~~~~~~~i~~--~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~ 158 (166)
T cd01893 81 DRPSTLERIRTKWLPLIRR--LGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYY 158 (166)
T ss_pred CCHHHHHHHHHHHHHHHHH--hCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHH
Confidence 9999999987789998884 345899999999999865321 78999999999999999
Q ss_pred HHHHHhCC
Q psy3301 150 AQKAVLHP 157 (608)
Q Consensus 150 l~~~i~~~ 157 (608)
+++.++++
T Consensus 159 ~~~~~~~~ 166 (166)
T cd01893 159 AQKAVLHP 166 (166)
T ss_pred HHHHhcCC
Confidence 99998773
No 26
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.91 E-value=3.3e-24 Score=204.55 Aligned_cols=148 Identities=26% Similarity=0.309 Sum_probs=123.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcce-EecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEE
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEI-TIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYS 89 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d 89 (608)
.||+|+|++|||||||+++|..+.|...+.++.... .....++...+.+.||||+|++.+......+++.+|++++|||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 489999999999999999999999987665554322 2222344556889999999999998888889999999999999
Q ss_pred cCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCC----------------------------C--cccCccc
Q psy3301 90 VVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYS----------------------------T--VESSAKT 139 (608)
Q Consensus 90 ~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~----------------------------~--~e~SAk~ 139 (608)
+++++||+.+...|++.+.. ...+.|++|||||+|+.... . ++|||++
T Consensus 81 v~~~~sf~~~~~~~~~~i~~--~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 81 VDSPDSLENVESKWLGEIRE--HCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHH--hCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 99999999997679999884 34689999999999986531 0 8999999
Q ss_pred CcCHHHHHHHHHHHHhCCCCC
Q psy3301 140 LKNISEMFYYAQKAVLHPMAP 160 (608)
Q Consensus 140 ~~~i~~lf~~l~~~i~~~~~~ 160 (608)
|.||+++|.++++.++.+..+
T Consensus 159 ~~~v~e~f~~l~~~~~~~~~~ 179 (189)
T cd04134 159 NRGVNEAFTEAARVALNVRPP 179 (189)
T ss_pred CCCHHHHHHHHHHHHhccccc
Confidence 999999999999999865543
No 27
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.91 E-value=4.1e-24 Score=201.00 Aligned_cols=142 Identities=27% Similarity=0.375 Sum_probs=119.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcc-eEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEE
Q psy3301 10 NVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEE-ITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVY 88 (608)
Q Consensus 10 ~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~ 88 (608)
.+||+++|++|||||||+.+++.+.|...+.++... ......++...+.+.||||+|++.+...+..+++++|++|+||
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 379999999999999999999999998776555422 2223345556688999999999999888889999999999999
Q ss_pred EcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCC-----------------------------C-cccCcc
Q psy3301 89 SVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYS-----------------------------T-VESSAK 138 (608)
Q Consensus 89 d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-----------------------------~-~e~SAk 138 (608)
|+++++||+.+...|++.+.. ...++|++|||||+|+.... . +||||+
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~--~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 158 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHH--hCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence 999999999997789998874 34689999999999995421 0 799999
Q ss_pred cCcCHHHHHHHHHHH
Q psy3301 139 TLKNISEMFYYAQKA 153 (608)
Q Consensus 139 ~~~~i~~lf~~l~~~ 153 (608)
+|.||+++|+.+++.
T Consensus 159 ~~~~i~~~f~~l~~~ 173 (174)
T cd01871 159 TQKGLKTVFDEAIRA 173 (174)
T ss_pred ccCCHHHHHHHHHHh
Confidence 999999999998864
No 28
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.91 E-value=9.3e-24 Score=196.22 Aligned_cols=144 Identities=26% Similarity=0.344 Sum_probs=119.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcc-eEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEE
Q psy3301 10 NVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEE-ITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVY 88 (608)
Q Consensus 10 ~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~ 88 (608)
.+||+++|++|||||||+++++.+.+...++++... ......+....+.+.||||+|++++...+..+++.+|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 379999999999999999999999988766665432 2222344555678899999999999999999999999999999
Q ss_pred EcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHHHH
Q psy3301 89 SVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYYAQ 151 (608)
Q Consensus 89 d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~l~ 151 (608)
|++++++|+.+. .|...+.......++|+++|+||+|+..... ++|||++|.|+.++|.++.
T Consensus 81 d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04136 81 SITSQSSFNDLQ-DLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLV 159 (163)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 999999999998 6877776533446789999999999965322 8999999999999999998
Q ss_pred HHH
Q psy3301 152 KAV 154 (608)
Q Consensus 152 ~~i 154 (608)
+.+
T Consensus 160 ~~~ 162 (163)
T cd04136 160 RQI 162 (163)
T ss_pred Hhc
Confidence 764
No 29
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.91 E-value=4.7e-23 Score=222.13 Aligned_cols=111 Identities=20% Similarity=0.230 Sum_probs=78.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCC--cCCCCCcceEecCccCCCceeEEEEeCCCCCCC--------hHHHHHHHHhc
Q psy3301 12 RILLLGDRHVGKTSLILSLVSEEFPE--LVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQT--------VDELTEEIQKA 81 (608)
Q Consensus 12 kI~lvG~~~vGKTSLi~~l~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~--------~~~~~~~~~~a 81 (608)
+|+|+|.+|||||||+++|++..... ..++. ++......+...+..+.+|||||.... .......++.+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~-t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~a 79 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGV-TRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEA 79 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCc-ccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhC
Confidence 58999999999999999999987432 23332 333333344445677999999997432 33345678999
Q ss_pred CcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCC
Q psy3301 82 HVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVD 129 (608)
Q Consensus 82 d~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 129 (608)
|++++|+|+.+..+.... .+...++. .++|+++|+||+|+..
T Consensus 80 d~vl~vvD~~~~~~~~d~--~i~~~l~~----~~~piilVvNK~D~~~ 121 (429)
T TIGR03594 80 DVILFVVDGREGLTPEDE--EIAKWLRK----SGKPVILVANKIDGKK 121 (429)
T ss_pred CEEEEEEeCCCCCCHHHH--HHHHHHHH----hCCCEEEEEECccCCc
Confidence 999999999886554432 23444442 3689999999999753
No 30
>KOG0078|consensus
Probab=99.91 E-value=4.5e-25 Score=202.81 Aligned_cols=147 Identities=16% Similarity=0.153 Sum_probs=130.5
Q ss_pred CCCceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecceEe-------CCcceeEeeeeccccc---
Q psy3301 405 TTRNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINTTTV-------YGQEKYLVLKEILVRD--- 474 (608)
Q Consensus 405 ~~r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~~~v-------~Gqe~~~~l~~~~~~~--- 474 (608)
+....||++++|++|||||||+.||..+.|...+..|+++++...++.+++..+ +|||+|+.+...|+++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 567899999999999999999999999999999999998855557777776655 9999999999999998
Q ss_pred ---ccccCCCCcc--cccccc------cCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHH
Q psy3301 475 ---EQLPVLLPVD--VDCDKY------FSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDRE 541 (608)
Q Consensus 475 ---v~d~~l~~~~--~~~~~~------~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e 541 (608)
||| +++.. +++..| +..+.+|++|||||+|+..+|+|..++++.+|+++|+. ++|+| ++.||.+
T Consensus 88 i~LvyD--itne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~-F~EtSAk~~~NI~e 164 (207)
T KOG0078|consen 88 ILLVYD--ITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIK-FFETSAKTNFNIEE 164 (207)
T ss_pred eEEEEE--ccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCe-EEEccccCCCCHHH
Confidence 899 88766 444422 34679999999999999999999999999999999998 99999 8999999
Q ss_pred HHHHHHHHHcCCC
Q psy3301 542 VFVKLATMAAFPR 554 (608)
Q Consensus 542 ~F~~l~~~a~~p~ 554 (608)
+|.+|++.++.++
T Consensus 165 aF~~La~~i~~k~ 177 (207)
T KOG0078|consen 165 AFLSLARDILQKL 177 (207)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999998776
No 31
>KOG0086|consensus
Probab=99.91 E-value=3.2e-24 Score=184.09 Aligned_cols=153 Identities=23% Similarity=0.315 Sum_probs=129.9
Q ss_pred ccccCCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcce--EecCccCCCceeEEEEeCCCCCCChHHHHHHHHh
Q psy3301 3 MKVSLRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEI--TIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQK 80 (608)
Q Consensus 3 ~~~~~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 80 (608)
|++...--+|++++|+.|+|||+|+++++..+|.....-+.... ..-..+..+.++++||||+|+|+|+...+.+++.
T Consensus 2 msEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRG 81 (214)
T KOG0086|consen 2 MSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRG 81 (214)
T ss_pred cchhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence 55566667899999999999999999999999987644322111 1112345677899999999999999999999999
Q ss_pred cCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCH
Q psy3301 81 AHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNI 143 (608)
Q Consensus 81 ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i 143 (608)
|.++++|||+++++||+.+. .|+..++. ...+++-||++|||.||.+.+. .|+||++|+||
T Consensus 82 AAGAlLVYD~TsrdsfnaLt-nWL~DaR~-lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNV 159 (214)
T KOG0086|consen 82 AAGALLVYDITSRDSFNALT-NWLTDART-LASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENV 159 (214)
T ss_pred ccceEEEEeccchhhHHHHH-HHHHHHHh-hCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccH
Confidence 99999999999999999998 89999987 4678899999999999988765 89999999999
Q ss_pred HHHHHHHHHHHhCC
Q psy3301 144 SEMFYYAQKAVLHP 157 (608)
Q Consensus 144 ~~lf~~l~~~i~~~ 157 (608)
+|+|-.+.+.++..
T Consensus 160 EEaFl~c~~tIl~k 173 (214)
T KOG0086|consen 160 EEAFLKCARTILNK 173 (214)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998888653
No 32
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.91 E-value=1.8e-23 Score=203.90 Aligned_cols=146 Identities=19% Similarity=0.221 Sum_probs=124.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEe--cCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITI--PPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVIC 85 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 85 (608)
...+||+++|++|||||||+++++.+.+...+.++...... ........+.+.+|||+|++++...+..+++.+|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 56799999999999999999999999988776666543322 2333456689999999999999988889999999999
Q ss_pred EEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC---------------cccCcccCcCHHHHHHHH
Q psy3301 86 LVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST---------------VESSAKTLKNISEMFYYA 150 (608)
Q Consensus 86 lV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~---------------~e~SAk~~~~i~~lf~~l 150 (608)
+|||+++++||+.+. .|++.+.. ...++|++|||||+|+..... ++|||++|.||+++|.++
T Consensus 91 lvfD~~~~~s~~~i~-~w~~~i~~--~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~l 167 (219)
T PLN03071 91 IMFDVTARLTYKNVP-TWHRDLCR--VCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (219)
T ss_pred EEEeCCCHHHHHHHH-HHHHHHHH--hCCCCcEEEEEEchhhhhccCCHHHHHHHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence 999999999999998 89999884 356899999999999864321 899999999999999999
Q ss_pred HHHHhC
Q psy3301 151 QKAVLH 156 (608)
Q Consensus 151 ~~~i~~ 156 (608)
.+.+..
T Consensus 168 ~~~~~~ 173 (219)
T PLN03071 168 ARKLAG 173 (219)
T ss_pred HHHHHc
Confidence 998864
No 33
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.91 E-value=1.4e-23 Score=195.45 Aligned_cols=144 Identities=25% Similarity=0.365 Sum_probs=120.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcc-eEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEE
Q psy3301 10 NVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEE-ITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVY 88 (608)
Q Consensus 10 ~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~ 88 (608)
.+||+++|++|||||||+++++.+.+...++++... ......+....+.+.+|||+|++++...+..+++.+|++++||
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 479999999999999999999999887766665432 2233445556788899999999999999999999999999999
Q ss_pred EcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHHHH
Q psy3301 89 SVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYYAQ 151 (608)
Q Consensus 89 d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~l~ 151 (608)
|++++.+|+.+. .|...+.......++|++||+||+|+..... ++|||++|.|++++|.++.
T Consensus 81 d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 159 (164)
T cd04175 81 SITAQSTFNDLQ-DLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV 159 (164)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence 999999999998 6777665433456899999999999975432 8999999999999999998
Q ss_pred HHH
Q psy3301 152 KAV 154 (608)
Q Consensus 152 ~~i 154 (608)
+.+
T Consensus 160 ~~l 162 (164)
T cd04175 160 RQI 162 (164)
T ss_pred HHh
Confidence 765
No 34
>KOG0095|consensus
Probab=99.91 E-value=3.9e-24 Score=182.84 Aligned_cols=145 Identities=26% Similarity=0.374 Sum_probs=125.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcc--eEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEE
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEE--ITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICL 86 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iil 86 (608)
--+||+++|..|||||+|++++..+-|++....+... ....+.+.++++++.||||+|+|+|+.+.+.+++.|+++|+
T Consensus 6 flfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalil 85 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEE
Confidence 3579999999999999999999999998865544322 23355678899999999999999999999999999999999
Q ss_pred EEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHH
Q psy3301 87 VYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYY 149 (608)
Q Consensus 87 V~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~ 149 (608)
|||++...||+.+. .|+.++.++ ...++--|+||||+|+.+++. .|+||+.-.|++.+|..
T Consensus 86 vydiscqpsfdclp-ewlreie~y-an~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~ 163 (213)
T KOG0095|consen 86 VYDISCQPSFDCLP-EWLREIEQY-ANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLD 163 (213)
T ss_pred EEecccCcchhhhH-HHHHHHHHH-hhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHH
Confidence 99999999999999 899999975 445667789999999987754 89999999999999998
Q ss_pred HHHHHh
Q psy3301 150 AQKAVL 155 (608)
Q Consensus 150 l~~~i~ 155 (608)
+.-.+.
T Consensus 164 ~a~rli 169 (213)
T KOG0095|consen 164 LACRLI 169 (213)
T ss_pred HHHHHH
Confidence 876664
No 35
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.91 E-value=1.2e-23 Score=202.74 Aligned_cols=146 Identities=23% Similarity=0.246 Sum_probs=122.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceE--ecCccC-CCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEE
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEIT--IPPDVT-PEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLV 87 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~--i~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV 87 (608)
+||+|+|++|||||||+++|+++.+...+.++..... ....+. ...+.+.+|||+|++++...+..+++++|++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 5899999999999999999999998877666554222 122344 5678899999999999999999999999999999
Q ss_pred EEcCChhhHHHHHHhHHHHHhhh---ccCCCCcEEEEEeCcCCCCCCC------------------cccCcccCcCHHHH
Q psy3301 88 YSVVDDASIDRLSSHWLPFLRNC---LVDTCLPIVLVGNKVDLVDYST------------------VESSAKTLKNISEM 146 (608)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~i~~~---~~~~~~piilv~nK~Dl~~~~~------------------~e~SAk~~~~i~~l 146 (608)
||+++++||+.+. .|+..+... ....++|++|||||+|+..... ++|||++|.||+++
T Consensus 81 ~D~t~~~s~~~~~-~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~ 159 (201)
T cd04107 81 FDVTRPSTFEAVL-KWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEA 159 (201)
T ss_pred EECCCHHHHHHHH-HHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHH
Confidence 9999999999997 898877642 1246789999999999973211 89999999999999
Q ss_pred HHHHHHHHhCC
Q psy3301 147 FYYAQKAVLHP 157 (608)
Q Consensus 147 f~~l~~~i~~~ 157 (608)
|.++.+.+...
T Consensus 160 f~~l~~~l~~~ 170 (201)
T cd04107 160 MRFLVKNILAN 170 (201)
T ss_pred HHHHHHHHHHh
Confidence 99999988654
No 36
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.91 E-value=2.7e-23 Score=192.62 Aligned_cols=144 Identities=21% Similarity=0.351 Sum_probs=119.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcc-eEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEE
Q psy3301 10 NVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEE-ITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVY 88 (608)
Q Consensus 10 ~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~ 88 (608)
.+||+++|++|||||||+++|+++.+...+.++... ......+....+.+.+|||+|++++...+..+++.+|++++||
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 369999999999999999999999987776665432 2223345555677899999999999999999999999999999
Q ss_pred EcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC----------------cccCcccCcCHHHHHHHHHH
Q psy3301 89 SVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST----------------VESSAKTLKNISEMFYYAQK 152 (608)
Q Consensus 89 d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------------~e~SAk~~~~i~~lf~~l~~ 152 (608)
|++++.+|+.+. .|...+.......++|+++|+||+|+..... +++||++|.|++++|+++.+
T Consensus 81 ~~~~~~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (162)
T cd04138 81 AINSRKSFEDIH-TYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVR 159 (162)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHH
Confidence 999999999987 6766665433446889999999999975332 89999999999999999987
Q ss_pred HH
Q psy3301 153 AV 154 (608)
Q Consensus 153 ~i 154 (608)
.+
T Consensus 160 ~~ 161 (162)
T cd04138 160 EI 161 (162)
T ss_pred Hh
Confidence 54
No 37
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.91 E-value=2.2e-23 Score=194.82 Aligned_cols=145 Identities=25% Similarity=0.356 Sum_probs=123.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceE--ecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEE
Q psy3301 10 NVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEIT--IPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLV 87 (608)
Q Consensus 10 ~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV 87 (608)
.+||+++|++|||||||++++.++.|...+.++..... ....+....+.+.+|||+|++.+......+++++|++++|
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v 82 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILV 82 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEE
Confidence 58999999999999999999999999887665543322 2234455568899999999999988888999999999999
Q ss_pred EEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHHH
Q psy3301 88 YSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYYA 150 (608)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~l 150 (608)
||++++++|+.+. .|++.+.. ....++|+++||||+|+.+... ++|||++|.|++++|+++
T Consensus 83 ~d~~~~~s~~~~~-~~~~~i~~-~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 160 (167)
T cd01867 83 YDITDEKSFENIR-NWMRNIEE-HASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTL 160 (167)
T ss_pred EECcCHHHHHhHH-HHHHHHHH-hCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999998 79998875 3446789999999999975432 899999999999999999
Q ss_pred HHHHhC
Q psy3301 151 QKAVLH 156 (608)
Q Consensus 151 ~~~i~~ 156 (608)
++.+..
T Consensus 161 ~~~~~~ 166 (167)
T cd01867 161 AKDIKK 166 (167)
T ss_pred HHHHHh
Confidence 998753
No 38
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.91 E-value=1.6e-23 Score=193.64 Aligned_cols=137 Identities=16% Similarity=0.224 Sum_probs=111.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEc
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSV 90 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~ 90 (608)
+||+++|++|||||||+.+++.+.|...++++.........+.+..+.+.+|||+|++. ..+++.+|++++|||+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~ 75 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSL 75 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEEC
Confidence 58999999999999999999999988766554444333344555668899999999875 2467889999999999
Q ss_pred CChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCC--CC------------------cccCcccCcCHHHHHHHH
Q psy3301 91 VDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDY--ST------------------VESSAKTLKNISEMFYYA 150 (608)
Q Consensus 91 ~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~--~~------------------~e~SAk~~~~i~~lf~~l 150 (608)
++++||+++. .|++.+.......++|+++||||+|+... +. +||||++|.||+++|..+
T Consensus 76 ~~~~sf~~~~-~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~ 154 (158)
T cd04103 76 ENEASFQTVY-NLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEA 154 (158)
T ss_pred CCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHH
Confidence 9999999998 68888875433467899999999998531 11 899999999999999998
Q ss_pred HHH
Q psy3301 151 QKA 153 (608)
Q Consensus 151 ~~~ 153 (608)
.+.
T Consensus 155 ~~~ 157 (158)
T cd04103 155 AQK 157 (158)
T ss_pred Hhh
Confidence 764
No 39
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.90 E-value=2.6e-23 Score=193.35 Aligned_cols=144 Identities=25% Similarity=0.313 Sum_probs=119.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCc-ceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEE
Q psy3301 10 NVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAE-EITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVY 88 (608)
Q Consensus 10 ~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~ 88 (608)
.+||+++|++|||||||+++++.+.+.+.+.++.. .......+....+.+.||||+|++++...+..+++++|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 47999999999999999999999999877655543 22223344555678899999999999999999999999999999
Q ss_pred EcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHHHH
Q psy3301 89 SVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYYAQ 151 (608)
Q Consensus 89 d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~l~ 151 (608)
|+++++||+++. .|...+.......++|+++|+||+|+..... ++|||++|.|++++|.++.
T Consensus 81 d~~~~~s~~~~~-~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04176 81 SLVNQQTFQDIK-PMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV 159 (163)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 999999999998 6777776433346899999999999864322 8999999999999999998
Q ss_pred HHH
Q psy3301 152 KAV 154 (608)
Q Consensus 152 ~~i 154 (608)
+.+
T Consensus 160 ~~l 162 (163)
T cd04176 160 RQM 162 (163)
T ss_pred Hhc
Confidence 754
No 40
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.90 E-value=1.8e-23 Score=197.89 Aligned_cols=147 Identities=22% Similarity=0.240 Sum_probs=121.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEec--Ccc----------CCCceeEEEEeCCCCCCChHHHHH
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIP--PDV----------TPEMVPTHIVDYSEVDQTVDELTE 76 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~--~~~----------~~~~~~~~i~Dt~G~~~~~~~~~~ 76 (608)
..+||+++|++|||||||++++.++.+...+.++....... ..+ ....+.+.||||+|++++...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 35899999999999999999999999887655544321111 111 134588999999999999999999
Q ss_pred HHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCccc
Q psy3301 77 EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKT 139 (608)
Q Consensus 77 ~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~ 139 (608)
+++++|++++|||+++++||+.+. .|+..+.......+.|+++|+||+|+.+... +++||++
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~ 161 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVR-NWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAAT 161 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCC
Confidence 999999999999999999999998 8999887533346789999999999975422 8999999
Q ss_pred CcCHHHHHHHHHHHHhC
Q psy3301 140 LKNISEMFYYAQKAVLH 156 (608)
Q Consensus 140 ~~~i~~lf~~l~~~i~~ 156 (608)
|.|++++|..+.+.++.
T Consensus 162 ~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 162 GTNVEKAVERLLDLVMK 178 (180)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999987753
No 41
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.90 E-value=3.9e-23 Score=192.36 Aligned_cols=144 Identities=25% Similarity=0.362 Sum_probs=120.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCc-ceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEE
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPELVPSKAE-EITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYS 89 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d 89 (608)
+||+|+|++|||||||++++++..+...+.++.. .......+....+.+.+|||+|++++...+..+++.+|++++|||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 5899999999999999999999998876555443 223333445566889999999999999999999999999999999
Q ss_pred cCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHHHHH
Q psy3301 90 VVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYYAQK 152 (608)
Q Consensus 90 ~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~l~~ 152 (608)
++++++|+.+. .|...+.......++|+++|+||+|+..... ++|||++|.|++++|+++.+
T Consensus 81 ~~~~~s~~~~~-~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 159 (164)
T smart00173 81 ITDRQSFEEIK-KFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR 159 (164)
T ss_pred CCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence 99999999998 6766665433445789999999999975432 99999999999999999988
Q ss_pred HHh
Q psy3301 153 AVL 155 (608)
Q Consensus 153 ~i~ 155 (608)
.+.
T Consensus 160 ~~~ 162 (164)
T smart00173 160 EIR 162 (164)
T ss_pred HHh
Confidence 764
No 42
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.90 E-value=2.1e-23 Score=193.72 Aligned_cols=141 Identities=26% Similarity=0.310 Sum_probs=119.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceE--ecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEE
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEIT--IPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVY 88 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~ 88 (608)
+||+++|++|||||||+++++++.|.+.+.++..... ....+....+.+.+||++|++++......+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 5899999999999999999999999876555543322 23344555678999999999999988899999999999999
Q ss_pred EcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHHHH
Q psy3301 89 SVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYYAQ 151 (608)
Q Consensus 89 d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~l~ 151 (608)
|+++++||+.+. .|+..+... ...++|+++||||+|+..... ++|||++|.||+++|.++.
T Consensus 81 d~~~~~sf~~~~-~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~ 158 (161)
T cd04117 81 DISSERSYQHIM-KWVSDVDEY-APEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLT 158 (161)
T ss_pred ECCCHHHHHHHH-HHHHHHHHh-CCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999999999998 799988753 345799999999999965442 8999999999999999998
Q ss_pred HH
Q psy3301 152 KA 153 (608)
Q Consensus 152 ~~ 153 (608)
+.
T Consensus 159 ~~ 160 (161)
T cd04117 159 EL 160 (161)
T ss_pred hh
Confidence 65
No 43
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.90 E-value=2.3e-23 Score=197.28 Aligned_cols=143 Identities=22% Similarity=0.330 Sum_probs=119.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceE--ecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEE
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEIT--IPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVY 88 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~ 88 (608)
+||+++|++|||||||+++++.+.|..++.++..... ....+....+.+.||||+|++++...+..++++||++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 5899999999999999999999999887766654332 23344556688999999999999998999999999999999
Q ss_pred EcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCC-----CC-C----------------cccCcccCcCHHHH
Q psy3301 89 SVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVD-----YS-T----------------VESSAKTLKNISEM 146 (608)
Q Consensus 89 d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-----~~-~----------------~e~SAk~~~~i~~l 146 (608)
|+++++||+.+. .|+..+... .....| ++||||+|+.. .. . ++|||++|.|++++
T Consensus 81 D~t~~~s~~~i~-~~~~~~~~~-~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~l 157 (182)
T cd04128 81 DLTRKSTLNSIK-EWYRQARGF-NKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKI 157 (182)
T ss_pred ECcCHHHHHHHH-HHHHHHHHh-CCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 999999999998 799988753 334566 68899999942 11 0 89999999999999
Q ss_pred HHHHHHHHhC
Q psy3301 147 FYYAQKAVLH 156 (608)
Q Consensus 147 f~~l~~~i~~ 156 (608)
|.++.+.+..
T Consensus 158 f~~l~~~l~~ 167 (182)
T cd04128 158 FKIVLAKAFD 167 (182)
T ss_pred HHHHHHHHHh
Confidence 9999988864
No 44
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.90 E-value=3.4e-23 Score=197.84 Aligned_cols=145 Identities=26% Similarity=0.359 Sum_probs=120.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcc-eEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEc
Q psy3301 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEE-ITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSV 90 (608)
Q Consensus 12 kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~ 90 (608)
||+++|++|||||||+++|+.+.|...++++... ......+....+.+.||||+|++++...+..+++.+|++|+|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 6899999999999999999999988776665432 222233455567899999999999999999999999999999999
Q ss_pred CChhhHHHHHHhHHHHHhhhcc--CCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHHHH
Q psy3301 91 VDDASIDRLSSHWLPFLRNCLV--DTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYYAQ 151 (608)
Q Consensus 91 ~~~~s~~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~l~ 151 (608)
++.+||+.+. .|+..+..... ..++|++|||||+|+..... +++||++|.|++++|.++.
T Consensus 81 ~~~~s~~~~~-~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~ 159 (190)
T cd04144 81 TSRSTFERVE-RFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV 159 (190)
T ss_pred CCHHHHHHHH-HHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 9999999998 78777764311 35789999999999964322 9999999999999999999
Q ss_pred HHHhCC
Q psy3301 152 KAVLHP 157 (608)
Q Consensus 152 ~~i~~~ 157 (608)
+.+...
T Consensus 160 ~~l~~~ 165 (190)
T cd04144 160 RALRQQ 165 (190)
T ss_pred HHHHHh
Confidence 987643
No 45
>PTZ00369 Ras-like protein; Provisional
Probab=99.90 E-value=3.7e-23 Score=197.36 Aligned_cols=148 Identities=20% Similarity=0.324 Sum_probs=123.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcc-eEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEE-ITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICL 86 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iil 86 (608)
...+||+++|++|||||||+++++.+.+...+.++... ......++...+.+.||||+|++++...+..+++.+|++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 34689999999999999999999999987766555432 22233456667889999999999999999999999999999
Q ss_pred EEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHH
Q psy3301 87 VYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYY 149 (608)
Q Consensus 87 V~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~ 149 (608)
|||++++++|+.+. .|...+.......++|+++|+||+|+..... ++|||++|.||+++|.+
T Consensus 83 v~D~s~~~s~~~~~-~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~ 161 (189)
T PTZ00369 83 VYSITSRSSFEEIA-SFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYE 161 (189)
T ss_pred EEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHH
Confidence 99999999999998 6887776433345889999999999865421 89999999999999999
Q ss_pred HHHHHhC
Q psy3301 150 AQKAVLH 156 (608)
Q Consensus 150 l~~~i~~ 156 (608)
+.+.+..
T Consensus 162 l~~~l~~ 168 (189)
T PTZ00369 162 LVREIRK 168 (189)
T ss_pred HHHHHHH
Confidence 9988764
No 46
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.90 E-value=3.2e-23 Score=193.32 Aligned_cols=144 Identities=22% Similarity=0.296 Sum_probs=120.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcce--EecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEE
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEI--TIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVY 88 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~ 88 (608)
+||+++|++|||||||+++|+++.+...+.++.... .....+....+.+++|||+|++.+...+..+++.+|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999999887766654322 223344566788999999999999888899999999999999
Q ss_pred EcCChhhHHHHHHhHHHHHhhhcc----CCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHH
Q psy3301 89 SVVDDASIDRLSSHWLPFLRNCLV----DTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMF 147 (608)
Q Consensus 89 d~~~~~s~~~~~~~~~~~i~~~~~----~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf 147 (608)
|++++++|+.+. .|+..+..... ..+.|+++|+||+|+.+... +++||++|.|++++|
T Consensus 81 D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 159 (168)
T cd04119 81 DVTDRQSFEALD-SWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMF 159 (168)
T ss_pred ECCCHHHHHhHH-HHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence 999999999987 79988875322 25789999999999973221 899999999999999
Q ss_pred HHHHHHHh
Q psy3301 148 YYAQKAVL 155 (608)
Q Consensus 148 ~~l~~~i~ 155 (608)
+++++.++
T Consensus 160 ~~l~~~l~ 167 (168)
T cd04119 160 QTLFSSIV 167 (168)
T ss_pred HHHHHHHh
Confidence 99998875
No 47
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.90 E-value=5.2e-23 Score=191.38 Aligned_cols=144 Identities=21% Similarity=0.320 Sum_probs=120.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcc-eEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEE
Q psy3301 10 NVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEE-ITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVY 88 (608)
Q Consensus 10 ~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~ 88 (608)
.+||+++|++|||||||++++++..+...++++... ......+....+.+.+|||||++++...+..+++.+|++++||
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 589999999999999999999999887666555432 2333445566688999999999999999999999999999999
Q ss_pred EcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHHHH
Q psy3301 89 SVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYYAQ 151 (608)
Q Consensus 89 d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~l~ 151 (608)
|++++.+|+.+. .|...+.......++|+++|+||+|+..... +++||++|.||+++|+++.
T Consensus 82 d~~~~~s~~~~~-~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 160 (164)
T cd04145 82 SVTDRGSFEEVD-KFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV 160 (164)
T ss_pred ECCCHHHHHHHH-HHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence 999999999998 6777766433456889999999999975432 9999999999999999998
Q ss_pred HHH
Q psy3301 152 KAV 154 (608)
Q Consensus 152 ~~i 154 (608)
+.+
T Consensus 161 ~~~ 163 (164)
T cd04145 161 RVI 163 (164)
T ss_pred Hhh
Confidence 764
No 48
>KOG0094|consensus
Probab=99.90 E-value=3e-24 Score=193.08 Aligned_cols=144 Identities=19% Similarity=0.249 Sum_probs=126.7
Q ss_pred ceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecceEe-------CCcceeEeeeeccccc------
Q psy3301 408 NVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINTTTV-------YGQEKYLVLKEILVRD------ 474 (608)
Q Consensus 408 ~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~~~v-------~Gqe~~~~l~~~~~~~------ 474 (608)
..+|+|++|+.+||||||+.||+.+.|...|.+|+|+++...++.+.+..+ +|||+|++|.+.|+|+
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi 100 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 100 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence 449999999999999999999999999999999999966667777766655 9999999999999999
Q ss_pred ccccCCCCcc--ccccccc-------CCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHH
Q psy3301 475 EQLPVLLPVD--VDCDKYF-------STSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVF 543 (608)
Q Consensus 475 v~d~~l~~~~--~~~~~~~-------~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F 543 (608)
||| +++.. ++.++|. ...++-++|||||.||.+.||++.++++.-|++++.. ++++| +|.||+++|
T Consensus 101 VyD--it~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~-f~etsak~g~NVk~lF 177 (221)
T KOG0094|consen 101 VYD--ITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAE-FIETSAKAGENVKQLF 177 (221)
T ss_pred EEe--ccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcE-EEEecccCCCCHHHHH
Confidence 899 99888 5555443 2346889999999999999999999999999999996 89999 899999999
Q ss_pred HHHHHHHcCCC
Q psy3301 544 VKLATMAAFPR 554 (608)
Q Consensus 544 ~~l~~~a~~p~ 554 (608)
.+|+..+..+.
T Consensus 178 rrIaa~l~~~~ 188 (221)
T KOG0094|consen 178 RRIAAALPGME 188 (221)
T ss_pred HHHHHhccCcc
Confidence 99998876664
No 49
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.90 E-value=2.5e-23 Score=194.24 Aligned_cols=143 Identities=20% Similarity=0.282 Sum_probs=120.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceE--ecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEE
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEIT--IPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVY 88 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~ 88 (608)
+||+++|++|||||||+++++.+.+...+.++..... +........+.+.+|||+|++.+......+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 5899999999999999999999888766555543222 22223455688999999999998888888999999999999
Q ss_pred EcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC---------------cccCcccCcCHHHHHHHHHHH
Q psy3301 89 SVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST---------------VESSAKTLKNISEMFYYAQKA 153 (608)
Q Consensus 89 d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~---------------~e~SAk~~~~i~~lf~~l~~~ 153 (608)
|+++++|++.+. .|+..+... ..++|+++||||+|+..... ++|||++|.|++++|.++.+.
T Consensus 81 d~~~~~s~~~~~-~~~~~i~~~--~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 157 (166)
T cd00877 81 DVTSRVTYKNVP-NWHRDLVRV--CGNIPIVLCGNKVDIKDRKVKAKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK 157 (166)
T ss_pred ECCCHHHHHHHH-HHHHHHHHh--CCCCcEEEEEEchhcccccCCHHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence 999999999998 799998853 34899999999999974332 999999999999999999998
Q ss_pred HhC
Q psy3301 154 VLH 156 (608)
Q Consensus 154 i~~ 156 (608)
+.+
T Consensus 158 ~~~ 160 (166)
T cd00877 158 LLG 160 (166)
T ss_pred HHh
Confidence 865
No 50
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.90 E-value=1.8e-23 Score=196.73 Aligned_cols=142 Identities=27% Similarity=0.395 Sum_probs=119.8
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcc-eEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEcC
Q psy3301 13 ILLLGDRHVGKTSLILSLVSEEFPELVPSKAEE-ITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSVV 91 (608)
Q Consensus 13 I~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~ 91 (608)
|+|+|++|||||||++++.++.+...+.++... ......++...+.+.+|||+|++.+......+++.+|++++|||++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 689999999999999999999987765554322 2223344556678999999999999888888999999999999999
Q ss_pred ChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCC-----------------------------C-cccCcccCc
Q psy3301 92 DDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYS-----------------------------T-VESSAKTLK 141 (608)
Q Consensus 92 ~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-----------------------------~-~e~SAk~~~ 141 (608)
+++||+.+...|++.+.. ..+++|++|||||+|+.... . ++|||++|.
T Consensus 81 ~~~s~~~~~~~~~~~i~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 81 SPASFENVKEKWYPEVKH--FCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CHHHHHHHHHHHHHHHHh--hCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 999999998789999884 45689999999999986521 0 899999999
Q ss_pred CHHHHHHHHHHHHhC
Q psy3301 142 NISEMFYYAQKAVLH 156 (608)
Q Consensus 142 ~i~~lf~~l~~~i~~ 156 (608)
||+++|..+++.+++
T Consensus 159 ~v~~lf~~l~~~~~~ 173 (174)
T smart00174 159 GVREVFEEAIRAALN 173 (174)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999998865
No 51
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.90 E-value=5e-23 Score=192.02 Aligned_cols=142 Identities=29% Similarity=0.369 Sum_probs=116.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcce-EecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEE
Q psy3301 10 NVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEI-TIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVY 88 (608)
Q Consensus 10 ~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~ 88 (608)
.+||+++|++|||||||+++++++.|...+.++.... ..........+.+.+|||+|++++......+++.+|++++||
T Consensus 1 ~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 1 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 3799999999999999999999999876655544322 222234456688999999999999988888999999999999
Q ss_pred EcCChhhHHHHHHhHHHHHhhh--ccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHH
Q psy3301 89 SVVDDASIDRLSSHWLPFLRNC--LVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYY 149 (608)
Q Consensus 89 d~~~~~s~~~~~~~~~~~i~~~--~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~ 149 (608)
|++++++|+.+. .|...+... ....++|+++|+||+|+..... ++|||++|.||+++|++
T Consensus 81 d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~ 159 (165)
T cd04140 81 SVTSKQSLEELK-PIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQE 159 (165)
T ss_pred ECCCHHHHHHHH-HHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Confidence 999999999998 677766642 1236799999999999975322 79999999999999999
Q ss_pred HHH
Q psy3301 150 AQK 152 (608)
Q Consensus 150 l~~ 152 (608)
+.+
T Consensus 160 l~~ 162 (165)
T cd04140 160 LLN 162 (165)
T ss_pred HHh
Confidence 875
No 52
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.90 E-value=3e-23 Score=192.72 Aligned_cols=143 Identities=25% Similarity=0.319 Sum_probs=119.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcc--eEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEE
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEE--ITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVY 88 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~ 88 (608)
+||+++|++|||||||+++++.+.+.+...++... ......+....+.+.+|||+|++++...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999987765443221 1222334566788999999999999999999999999999999
Q ss_pred EcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC--------------cccCcccCcCHHHHHHHHHHHH
Q psy3301 89 SVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST--------------VESSAKTLKNISEMFYYAQKAV 154 (608)
Q Consensus 89 d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------------~e~SAk~~~~i~~lf~~l~~~i 154 (608)
|++++.+++.+. .|+..+.. ...++|+++|+||+|+..... +++||++|.|++++|+.+.+.+
T Consensus 81 d~~~~~s~~~~~-~~~~~i~~--~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 157 (161)
T cd04124 81 DVTRKITYKNLS-KWYEELRE--YRPEIPCIVVANKIDLDPSVTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLA 157 (161)
T ss_pred ECCCHHHHHHHH-HHHHHHHH--hCCCCcEEEEEECccCchhHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 999999999987 89998874 456799999999999853211 8999999999999999999877
Q ss_pred hC
Q psy3301 155 LH 156 (608)
Q Consensus 155 ~~ 156 (608)
..
T Consensus 158 ~~ 159 (161)
T cd04124 158 VS 159 (161)
T ss_pred Hh
Confidence 54
No 53
>KOG0098|consensus
Probab=99.90 E-value=2.2e-24 Score=192.21 Aligned_cols=143 Identities=20% Similarity=0.235 Sum_probs=127.5
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCC-CceEecceEe-------CCcceeEeeeeccccc----
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECD-PPYTINTTTV-------YGQEKYLVLKEILVRD---- 474 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~-~~~~i~~~~v-------~Gqe~~~~l~~~~~~~---- 474 (608)
.+.||++++|+.|||||+|+.||+.+.|.+.++.|+|+ +|+ ..+.|++.++ +|||.|+.++..||++
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGv-efg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGV-EFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeee-eeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 46899999999999999999999999999999999999 666 5677777665 9999999999999999
Q ss_pred --ccccCCCCcc--cccc------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHH
Q psy3301 475 --EQLPVLLPVD--VDCD------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREV 542 (608)
Q Consensus 475 --v~d~~l~~~~--~~~~------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~ 542 (608)
||| ++.++ .+.+ +....+++-++|+|||+||...|.|+.++++.||+++++. ++++| ++.||+|+
T Consensus 83 lLVyd--it~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLi-fmETSakt~~~VEEa 159 (216)
T KOG0098|consen 83 LLVYD--ITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLI-FMETSAKTAENVEEA 159 (216)
T ss_pred EEEEE--ccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCce-eehhhhhhhhhHHHH
Confidence 999 99888 4444 3444799999999999999999999999999999999998 88999 89999999
Q ss_pred HHHHHHHHcCC
Q psy3301 543 FVKLATMAAFP 553 (608)
Q Consensus 543 F~~l~~~a~~p 553 (608)
|+..+..++..
T Consensus 160 F~nta~~Iy~~ 170 (216)
T KOG0098|consen 160 FINTAKEIYRK 170 (216)
T ss_pred HHHHHHHHHHH
Confidence 99999877543
No 54
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.90 E-value=4.2e-23 Score=193.41 Aligned_cols=143 Identities=20% Similarity=0.243 Sum_probs=119.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceE--ecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEE
Q psy3301 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEIT--IPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYS 89 (608)
Q Consensus 12 kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d 89 (608)
||+++|++|||||||+++++++.|...+.++..... ....+.+..+.+++|||+|++++......+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 899999999999999999999999877766654332 223345556889999999999999999999999999999999
Q ss_pred cCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-------------------cccCcccCcCHHHHHHHH
Q psy3301 90 VVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-------------------VESSAKTLKNISEMFYYA 150 (608)
Q Consensus 90 ~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-------------------~e~SAk~~~~i~~lf~~l 150 (608)
++++++++.+. .|++.+.......+.|+++|+||+|+..... ++|||++|.|++++|..+
T Consensus 82 ~~~~~s~~~~~-~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l 160 (170)
T cd04108 82 LTDVASLEHTR-QWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRV 160 (170)
T ss_pred CcCHHHHHHHH-HHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 99999999998 7998875422334578999999999854211 899999999999999999
Q ss_pred HHHHh
Q psy3301 151 QKAVL 155 (608)
Q Consensus 151 ~~~i~ 155 (608)
.+.+.
T Consensus 161 ~~~~~ 165 (170)
T cd04108 161 AALTF 165 (170)
T ss_pred HHHHH
Confidence 88874
No 55
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=1.1e-22 Score=219.56 Aligned_cols=111 Identities=21% Similarity=0.196 Sum_probs=77.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCC--CcCCCCCcceEecCccCCCceeEEEEeCCCCCCC--------hHHHHHHHHh
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFP--ELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQT--------VDELTEEIQK 80 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~--------~~~~~~~~~~ 80 (608)
.+|+|+|.+|||||||+++|++.... ...++. ++......+...+..+.+|||||++.. ......+++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~-t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGV-TRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEE 80 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCC-cccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 48999999999999999999988743 223332 233332333445588999999998872 2224557889
Q ss_pred cCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCC
Q psy3301 81 AHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLV 128 (608)
Q Consensus 81 ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 128 (608)
+|++++|+|++++.+.... .....++. .++|+++|+||+|+.
T Consensus 81 ad~il~vvd~~~~~~~~~~--~~~~~l~~----~~~piilv~NK~D~~ 122 (435)
T PRK00093 81 ADVILFVVDGRAGLTPADE--EIAKILRK----SNKPVILVVNKVDGP 122 (435)
T ss_pred CCEEEEEEECCCCCCHHHH--HHHHHHHH----cCCcEEEEEECccCc
Confidence 9999999999886443322 12223332 268999999999953
No 56
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.90 E-value=5.1e-23 Score=191.95 Aligned_cols=143 Identities=22% Similarity=0.295 Sum_probs=119.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceE--ecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEE
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEIT--IPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVY 88 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~ 88 (608)
+||+++|++|||||||+++|.++++...+.++.+... .........+.+.+|||+|++++...+..+++.+|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 7999999999999999999999998776555443211 12223445688999999999999988999999999999999
Q ss_pred EcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHHHH
Q psy3301 89 SVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYYAQ 151 (608)
Q Consensus 89 d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~l~ 151 (608)
|++++++|+.+. .|++.+.. ....+.|+++|+||+|+.+... +++||++|.|++++|+++.
T Consensus 82 d~~~~~s~~~~~-~~~~~i~~-~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 159 (165)
T cd01865 82 DITNEESFNAVQ-DWSTQIKT-YSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLV 159 (165)
T ss_pred ECCCHHHHHHHH-HHHHHHHH-hCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 999999999998 79998875 2345789999999999975432 8999999999999999998
Q ss_pred HHHh
Q psy3301 152 KAVL 155 (608)
Q Consensus 152 ~~i~ 155 (608)
+.+.
T Consensus 160 ~~~~ 163 (165)
T cd01865 160 DIIC 163 (165)
T ss_pred HHHH
Confidence 8653
No 57
>KOG0093|consensus
Probab=99.90 E-value=4.2e-23 Score=176.30 Aligned_cols=145 Identities=21% Similarity=0.310 Sum_probs=123.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCcc--CCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEE
Q psy3301 10 NVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDV--TPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLV 87 (608)
Q Consensus 10 ~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV 87 (608)
..|++|+|+..||||||+.|+.+..|.+..-.+....-....+ ....++++||||+|+|+++.+...++++|+++|++
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLm 100 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM 100 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEE
Confidence 5799999999999999999999999987633332221111111 23568899999999999999999999999999999
Q ss_pred EEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHHH
Q psy3301 88 YSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYYA 150 (608)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~l 150 (608)
||+++.+||..+. .|.-.|.. ....+.||||||||||+.+++. +|+|||.+.||.++|..+
T Consensus 101 yDitNeeSf~svq-dw~tqIkt-ysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~l 178 (193)
T KOG0093|consen 101 YDITNEESFNSVQ-DWITQIKT-YSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERL 178 (193)
T ss_pred EecCCHHHHHHHH-HHHHHhee-eeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHH
Confidence 9999999999998 89998887 3667999999999999988765 999999999999999999
Q ss_pred HHHHhC
Q psy3301 151 QKAVLH 156 (608)
Q Consensus 151 ~~~i~~ 156 (608)
...+..
T Consensus 179 v~~Ic~ 184 (193)
T KOG0093|consen 179 VDIICD 184 (193)
T ss_pred HHHHHH
Confidence 888754
No 58
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.90 E-value=4.6e-23 Score=196.41 Aligned_cols=145 Identities=26% Similarity=0.376 Sum_probs=121.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEe-cCccC-CCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEE
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITI-PPDVT-PEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVY 88 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i-~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~ 88 (608)
+||+|+|++|||||||+++|.++.+...+.++...... ..... ...+.+.||||+|++++......+++.+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 58999999999999999999999988765554432221 22222 45688999999999999888888999999999999
Q ss_pred EcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCC-------C---------------cccCcccCcCHHHH
Q psy3301 89 SVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYS-------T---------------VESSAKTLKNISEM 146 (608)
Q Consensus 89 d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-------~---------------~e~SAk~~~~i~~l 146 (608)
|+++++||+.+...|+..+.. ...++|+++||||+|+.... . ++|||++|.||+++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNH--FCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV 158 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHH--hCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence 999999999998789988873 35689999999999996532 0 89999999999999
Q ss_pred HHHHHHHHhCC
Q psy3301 147 FYYAQKAVLHP 157 (608)
Q Consensus 147 f~~l~~~i~~~ 157 (608)
|..+++.+...
T Consensus 159 f~~l~~~~~~~ 169 (187)
T cd04132 159 FDTAIEEALKK 169 (187)
T ss_pred HHHHHHHHHhh
Confidence 99999988653
No 59
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.90 E-value=6.5e-23 Score=199.74 Aligned_cols=146 Identities=29% Similarity=0.344 Sum_probs=121.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEe--cCccCC-CceeEEEEeCCCCCCChHHHHHHHHhcCcEEEE
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITI--PPDVTP-EMVPTHIVDYSEVDQTVDELTEEIQKAHVICLV 87 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i--~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV 87 (608)
+||+++|++|||||||+++|+++.|...+.++...... ...+.. ..+.+.||||+|++.+...+..+++.+|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 58999999999999999999999998777666543322 222322 468899999999999999999999999999999
Q ss_pred EEcCChhhHHHHHHhHHHHHhhhcc--CCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHH
Q psy3301 88 YSVVDDASIDRLSSHWLPFLRNCLV--DTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFY 148 (608)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~ 148 (608)
||+++++||+.+. .|+..+..... ..+.|+++|+||+|+.+... +++||++|.||+++|+
T Consensus 81 ~D~t~~~s~~~~~-~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~ 159 (215)
T cd04109 81 YDVTNSQSFENLE-DWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQ 159 (215)
T ss_pred EECCCHHHHHHHH-HHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 9999999999998 79998875421 34578999999999975332 8999999999999999
Q ss_pred HHHHHHhCC
Q psy3301 149 YAQKAVLHP 157 (608)
Q Consensus 149 ~l~~~i~~~ 157 (608)
++.+.+...
T Consensus 160 ~l~~~l~~~ 168 (215)
T cd04109 160 QLAAELLGV 168 (215)
T ss_pred HHHHHHHhc
Confidence 999988754
No 60
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.90 E-value=1.9e-22 Score=228.48 Aligned_cols=113 Identities=16% Similarity=0.163 Sum_probs=81.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHcCCCCCc-CCCCCcceEecCccCCCceeEEEEeCCCCCC--------ChHHHHHHHHh
Q psy3301 10 NVRILLLGDRHVGKTSLILSLVSEEFPEL-VPSKAEEITIPPDVTPEMVPTHIVDYSEVDQ--------TVDELTEEIQK 80 (608)
Q Consensus 10 ~~kI~lvG~~~vGKTSLi~~l~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~~~~~ 80 (608)
..+|+|+|.+|||||||+++|++...... ..+..++..+.......+..+.+|||+|.+. +......+++.
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 354 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSL 354 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHh
Confidence 46899999999999999999998765332 2233344444444455567899999999764 22334567899
Q ss_pred cCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCC
Q psy3301 81 AHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLV 128 (608)
Q Consensus 81 ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 128 (608)
||++++|+|+++.-+. ....|...++. .++|+++|+||+|+.
T Consensus 355 aD~iL~VvDa~~~~~~--~d~~i~~~Lr~----~~~pvIlV~NK~D~~ 396 (712)
T PRK09518 355 ADAVVFVVDGQVGLTS--TDERIVRMLRR----AGKPVVLAVNKIDDQ 396 (712)
T ss_pred CCEEEEEEECCCCCCH--HHHHHHHHHHh----cCCCEEEEEECcccc
Confidence 9999999999865332 22246666653 478999999999964
No 61
>KOG0091|consensus
Probab=99.90 E-value=5.2e-23 Score=178.91 Aligned_cols=148 Identities=21% Similarity=0.292 Sum_probs=122.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCc--c-CCCceeEEEEeCCCCCCChHHHHHHHHhcCcE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPD--V-TPEMVPTHIVDYSEVDQTVDELTEEIQKAHVI 84 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~--~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 84 (608)
.-.+|++|+|++-||||||+..+..++|++-..|+...+-...- + .+..+++++|||+|+|+|+.+...+++++-++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 34689999999999999999999999999865554322211111 1 34578899999999999999999999999999
Q ss_pred EEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcE-EEEEeCcCCCCCCC-----------------cccCcccCcCHHHH
Q psy3301 85 CLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPI-VLVGNKVDLVDYST-----------------VESSAKTLKNISEM 146 (608)
Q Consensus 85 ilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~l 146 (608)
++|||+++++||+++. .|+.+......++..+| .|||+|+||...+. +|+|||+|.||++.
T Consensus 86 llvyditnr~sfehv~-~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEA 164 (213)
T KOG0091|consen 86 LLVYDITNRESFEHVE-NWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEA 164 (213)
T ss_pred EEEEeccchhhHHHHH-HHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHH
Confidence 9999999999999999 89988775444455554 69999999997765 99999999999999
Q ss_pred HHHHHHHHhC
Q psy3301 147 FYYAQKAVLH 156 (608)
Q Consensus 147 f~~l~~~i~~ 156 (608)
|+.+.+.+..
T Consensus 165 F~mlaqeIf~ 174 (213)
T KOG0091|consen 165 FDMLAQEIFQ 174 (213)
T ss_pred HHHHHHHHHH
Confidence 9999888753
No 62
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.90 E-value=5.4e-23 Score=191.71 Aligned_cols=143 Identities=22% Similarity=0.335 Sum_probs=119.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcce--EecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEE
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEI--TIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICL 86 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iil 86 (608)
..+||+++|++|||||||++++..+.+.....++.... .....+....+.+.+|||||++++......+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 35899999999999999999999998877655443222 2223344455789999999999998888999999999999
Q ss_pred EEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC------------------cccCcccCcCHHHHHH
Q psy3301 87 VYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST------------------VESSAKTLKNISEMFY 148 (608)
Q Consensus 87 V~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~------------------~e~SAk~~~~i~~lf~ 148 (608)
|||++++.+|+.+. .|+..+.. ....++|+++|+||+|+..... +++||++|.|++++|.
T Consensus 82 v~d~~~~~s~~~~~-~~~~~i~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~ 159 (165)
T cd01864 82 AYDITRRSSFESVP-HWIEEVEK-YGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFL 159 (165)
T ss_pred EEECcCHHHHHhHH-HHHHHHHH-hCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHH
Confidence 99999999999988 89998875 3456899999999999975432 8999999999999999
Q ss_pred HHHHH
Q psy3301 149 YAQKA 153 (608)
Q Consensus 149 ~l~~~ 153 (608)
.+.+.
T Consensus 160 ~l~~~ 164 (165)
T cd01864 160 LMATE 164 (165)
T ss_pred HHHHh
Confidence 98864
No 63
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.89 E-value=1.1e-22 Score=195.69 Aligned_cols=146 Identities=26% Similarity=0.316 Sum_probs=123.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceE--ecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEE
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEIT--IPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICL 86 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iil 86 (608)
..+||+|+|++|||||||+++|.+..+...+.++..... ...++.+..+.+.||||+|++.+...+..+++.+|++++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil 84 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV 84 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence 468999999999999999999999998766555443221 223344556789999999999999999999999999999
Q ss_pred EEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHH
Q psy3301 87 VYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYY 149 (608)
Q Consensus 87 V~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~ 149 (608)
|||++++++|+.+. .|+..+. ......|++|||||+|+..... +++||++|.||.++|++
T Consensus 85 v~D~~~~~s~~~~~-~~~~~i~--~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~ 161 (199)
T cd04110 85 VYDVTNGESFVNVK-RWLQEIE--QNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNC 161 (199)
T ss_pred EEECCCHHHHHHHH-HHHHHHH--HhCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHH
Confidence 99999999999998 7999887 4456789999999999975432 99999999999999999
Q ss_pred HHHHHhCC
Q psy3301 150 AQKAVLHP 157 (608)
Q Consensus 150 l~~~i~~~ 157 (608)
+.+.++..
T Consensus 162 l~~~~~~~ 169 (199)
T cd04110 162 ITELVLRA 169 (199)
T ss_pred HHHHHHHh
Confidence 99998753
No 64
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.89 E-value=1e-22 Score=190.05 Aligned_cols=144 Identities=26% Similarity=0.390 Sum_probs=120.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcce--EecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEE
Q psy3301 10 NVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEI--TIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLV 87 (608)
Q Consensus 10 ~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV 87 (608)
.+||+++|++|||||||+++++++.+...+.++.+.. .....+....+.+.+||++|++++...+..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 4799999999999999999999998876655544322 22233455567899999999999999889999999999999
Q ss_pred EEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHHH
Q psy3301 88 YSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYYA 150 (608)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~l 150 (608)
||+++++||+.+. .|+..+... ...+.|+++|+||+|+..... +++||++|.|++++|..+
T Consensus 82 ~d~~~~~s~~~l~-~~~~~~~~~-~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 159 (166)
T cd01869 82 YDVTDQESFNNVK-QWLQEIDRY-ASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTM 159 (166)
T ss_pred EECcCHHHHHhHH-HHHHHHHHh-CCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHH
Confidence 9999999999998 799988752 345789999999999865432 899999999999999999
Q ss_pred HHHHh
Q psy3301 151 QKAVL 155 (608)
Q Consensus 151 ~~~i~ 155 (608)
.+.+.
T Consensus 160 ~~~~~ 164 (166)
T cd01869 160 AREIK 164 (166)
T ss_pred HHHHH
Confidence 88764
No 65
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.89 E-value=6.3e-23 Score=196.38 Aligned_cols=139 Identities=19% Similarity=0.265 Sum_probs=119.2
Q ss_pred EcCCCCCHHHHHHHHHcCCCCCcCCCCCc--ceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEcCCh
Q psy3301 16 LGDRHVGKTSLILSLVSEEFPELVPSKAE--EITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSVVDD 93 (608)
Q Consensus 16 vG~~~vGKTSLi~~l~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~~~ 93 (608)
+|++|||||||+++++.+.|...+.++.. .......++...+.+.||||+|++++...+..+++.+|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999988776666543 2233334556678999999999999999999999999999999999999
Q ss_pred hhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC---------------cccCcccCcCHHHHHHHHHHHHhCC
Q psy3301 94 ASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST---------------VESSAKTLKNISEMFYYAQKAVLHP 157 (608)
Q Consensus 94 ~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~---------------~e~SAk~~~~i~~lf~~l~~~i~~~ 157 (608)
.||+.+. .|++.+.. ...++|++|||||+|+..... ++|||++|.||.++|.++++.+.+.
T Consensus 81 ~S~~~i~-~w~~~i~~--~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 81 VTYKNVP-NWHRDLVR--VCENIPIVLCGNKVDVKDRKVKAKSITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred HHHHHHH-HHHHHHHH--hCCCCCEEEEEECcccccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 9999998 79999984 346899999999999865332 9999999999999999999988664
No 66
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.89 E-value=6.4e-23 Score=195.94 Aligned_cols=140 Identities=22% Similarity=0.314 Sum_probs=109.7
Q ss_pred ccEEEEEcCCCCCHHHHHH-HHHcCCC-----CCcCCCCCc---ceEecC--------ccCCCceeEEEEeCCCCCCChH
Q psy3301 10 NVRILLLGDRHVGKTSLIL-SLVSEEF-----PELVPSKAE---EITIPP--------DVTPEMVPTHIVDYSEVDQTVD 72 (608)
Q Consensus 10 ~~kI~lvG~~~vGKTSLi~-~l~~~~~-----~~~~~~~~~---~~~i~~--------~~~~~~~~~~i~Dt~G~~~~~~ 72 (608)
.+||+++|++|||||||+. ++.++.+ ...+.|+.. ...... .+++..+.+.||||+|++..
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 5899999999999999996 6665543 334444431 121111 34566789999999998753
Q ss_pred HHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCC-------------------CC-
Q psy3301 73 ELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDY-------------------ST- 132 (608)
Q Consensus 73 ~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~-------------------~~- 132 (608)
....+++++|++++|||++++.||+.+...|++.+.. ...+.|++|||||+||... ..
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~--~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V 157 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRH--FCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL 157 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHH--hCCCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence 3456789999999999999999999998679998874 3457899999999999641 11
Q ss_pred ----------------cccCcccCcCHHHHHHHHHHH
Q psy3301 133 ----------------VESSAKTLKNISEMFYYAQKA 153 (608)
Q Consensus 133 ----------------~e~SAk~~~~i~~lf~~l~~~ 153 (608)
+||||++|.||+++|+.++++
T Consensus 158 ~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 158 PPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 899999999999999999874
No 67
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.89 E-value=1.4e-22 Score=196.56 Aligned_cols=146 Identities=21% Similarity=0.336 Sum_probs=120.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEec--Ccc-CCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEE
Q psy3301 10 NVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIP--PDV-TPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICL 86 (608)
Q Consensus 10 ~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~--~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iil 86 (608)
.+||+|+|++|||||||+++|+++.+.....++....... ..+ ....+.+.+|||+|++.+......+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 5899999999999999999999999877655544322221 122 2345789999999999999888999999999999
Q ss_pred EEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHH
Q psy3301 87 VYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYY 149 (608)
Q Consensus 87 V~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~ 149 (608)
|||+++++||+.+. .|+..+.........|++||+||+|+..... ++|||++|.||+++|++
T Consensus 82 v~D~~~~~Sf~~l~-~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~ 160 (211)
T cd04111 82 VFDITNRESFEHVH-DWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFEL 160 (211)
T ss_pred EEECCCHHHHHHHH-HHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999998 7888887533344678999999999976432 99999999999999999
Q ss_pred HHHHHhC
Q psy3301 150 AQKAVLH 156 (608)
Q Consensus 150 l~~~i~~ 156 (608)
+.+.+..
T Consensus 161 l~~~~~~ 167 (211)
T cd04111 161 LTQEIYE 167 (211)
T ss_pred HHHHHHH
Confidence 9988754
No 68
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.89 E-value=1.6e-22 Score=196.15 Aligned_cols=141 Identities=28% Similarity=0.320 Sum_probs=114.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEc
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSV 90 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~ 90 (608)
+||+++|++|||||||+++|+.+.|... .++........ ....+.+.||||+|++.+......+++.+|++|+|||+
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~-~~Tig~~~~~~--~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dv 77 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDT-VSTVGGAFYLK--QWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDV 77 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCC-CCccceEEEEE--EeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEEC
Confidence 5899999999999999999999998753 33332222111 22467899999999999999999999999999999999
Q ss_pred CChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCC-------------------CCC-------------------
Q psy3301 91 VDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVD-------------------YST------------------- 132 (608)
Q Consensus 91 ~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-------------------~~~------------------- 132 (608)
++++||+.+...|..... ....++|+||||||+|+.. .+.
T Consensus 78 t~~~Sf~~l~~~~~~l~~--~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 78 SNVQSLEELEDRFLGLTD--TANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML 155 (220)
T ss_pred CCHHHHHHHHHHHHHHHH--hcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence 999999999855555444 3456799999999999965 111
Q ss_pred ------------cccCcccCcCHHHHHHHHHHHHhC
Q psy3301 133 ------------VESSAKTLKNISEMFYYAQKAVLH 156 (608)
Q Consensus 133 ------------~e~SAk~~~~i~~lf~~l~~~i~~ 156 (608)
+||||++|.||+++|..+++.++.
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~ 191 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLP 191 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 589999999999999999998853
No 69
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.89 E-value=8.3e-23 Score=189.73 Aligned_cols=142 Identities=31% Similarity=0.425 Sum_probs=123.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcc--eEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEE
Q psy3301 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEE--ITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYS 89 (608)
Q Consensus 12 kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d 89 (608)
||+++|++|||||||+++|.++.|...+.++... ......+....+.+.|||++|++++.......++++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8999999999999999999999998887666522 33344456777889999999999998888899999999999999
Q ss_pred cCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHHHHH
Q psy3301 90 VVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYYAQK 152 (608)
Q Consensus 90 ~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~l~~ 152 (608)
+++++||+.+. .|++.+... ...+.|++|||||+|+..... ++|||+++.||.++|..+++
T Consensus 81 ~~~~~S~~~~~-~~~~~i~~~-~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~ 158 (162)
T PF00071_consen 81 VTDEESFENLK-KWLEEIQKY-KPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIR 158 (162)
T ss_dssp TTBHHHHHTHH-HHHHHHHHH-STTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHH
T ss_pred ccccccccccc-ccccccccc-ccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999 999999963 334789999999999986332 99999999999999999998
Q ss_pred HHh
Q psy3301 153 AVL 155 (608)
Q Consensus 153 ~i~ 155 (608)
.+.
T Consensus 159 ~i~ 161 (162)
T PF00071_consen 159 KIL 161 (162)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
No 70
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.89 E-value=1.2e-22 Score=190.06 Aligned_cols=141 Identities=18% Similarity=0.149 Sum_probs=112.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLV 87 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV 87 (608)
++.+||+++|++|||||||+++|..+.+.. +.++...... .+....+.+.+|||+|++++...+..+++++|++|+|
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v 83 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 83 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 457899999999999999999999887754 3333322221 2233568899999999999988889999999999999
Q ss_pred EEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC--------------------cccCcccCcCHHHHH
Q psy3301 88 YSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST--------------------VESSAKTLKNISEMF 147 (608)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------------------~e~SAk~~~~i~~lf 147 (608)
||++++.+++.+...|.+.+.. ....++|++||+||+|+..... ++|||++|.|++++|
T Consensus 84 ~D~t~~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~ 162 (168)
T cd04149 84 VDSADRDRIDEARQELHRIIND-REMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGL 162 (168)
T ss_pred EeCCchhhHHHHHHHHHHHhcC-HhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHH
Confidence 9999999999988555555542 2335789999999999864211 789999999999999
Q ss_pred HHHHH
Q psy3301 148 YYAQK 152 (608)
Q Consensus 148 ~~l~~ 152 (608)
.++.+
T Consensus 163 ~~l~~ 167 (168)
T cd04149 163 TWLSS 167 (168)
T ss_pred HHHhc
Confidence 99865
No 71
>KOG0092|consensus
Probab=99.89 E-value=1.1e-23 Score=189.76 Aligned_cols=144 Identities=17% Similarity=0.238 Sum_probs=123.3
Q ss_pred ceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecc--eE-----eCCcceeEeeeeccccc------
Q psy3301 408 NVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINT--TT-----VYGQEKYLVLKEILVRD------ 474 (608)
Q Consensus 408 ~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~--~~-----v~Gqe~~~~l~~~~~~~------ 474 (608)
..+|++++|++|||||||+.||..+.|.+...+|++.-++...+.++. +. .+|||+|..|.+.|||+
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAiv 83 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIV 83 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEE
Confidence 358999999999999999999999999998888998855556666555 22 29999999999999999
Q ss_pred ccccCCCCccccc--c------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHH
Q psy3301 475 EQLPVLLPVDVDC--D------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFV 544 (608)
Q Consensus 475 v~d~~l~~~~~~~--~------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~ 544 (608)
||| +++.+... + +....+++-+.|||||+||.+.|++..+++..||++.++. ++++| ++.||+++|.
T Consensus 84 vYD--it~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll-~~ETSAKTg~Nv~~if~ 160 (200)
T KOG0092|consen 84 VYD--ITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLL-FFETSAKTGENVNEIFQ 160 (200)
T ss_pred EEe--cccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCE-EEEEecccccCHHHHHH
Confidence 899 99988322 2 2223488899999999999999999999999999999998 99999 9999999999
Q ss_pred HHHHHHcCCC
Q psy3301 545 KLATMAAFPR 554 (608)
Q Consensus 545 ~l~~~a~~p~ 554 (608)
.|++.+....
T Consensus 161 ~Ia~~lp~~~ 170 (200)
T KOG0092|consen 161 AIAEKLPCSD 170 (200)
T ss_pred HHHHhccCcc
Confidence 9999885554
No 72
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.89 E-value=1.2e-22 Score=188.39 Aligned_cols=142 Identities=25% Similarity=0.350 Sum_probs=119.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcc--eEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEE
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEE--ITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVY 88 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~ 88 (608)
+||+|+|++|||||||+++|+++.+....+++... ......+....+.+.+||++|++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999987765554432 2223345556688999999999999888899999999999999
Q ss_pred EcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHHHH
Q psy3301 89 SVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYYAQ 151 (608)
Q Consensus 89 d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~l~ 151 (608)
|++++.+++.+. .|+..+.. ...+++|+++|+||+|+..... +++||+++.|++++|+++.
T Consensus 81 d~~~~~s~~~~~-~~~~~~~~-~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~ 158 (161)
T cd04113 81 DITNRTSFEALP-TWLSDARA-LASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCA 158 (161)
T ss_pred ECCCHHHHHHHH-HHHHHHHH-hCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 999999999998 78888765 3457899999999999975432 9999999999999999998
Q ss_pred HHH
Q psy3301 152 KAV 154 (608)
Q Consensus 152 ~~i 154 (608)
+.+
T Consensus 159 ~~~ 161 (161)
T cd04113 159 RSI 161 (161)
T ss_pred HhC
Confidence 753
No 73
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.89 E-value=1.7e-22 Score=188.21 Aligned_cols=143 Identities=26% Similarity=0.350 Sum_probs=119.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcce--EecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEE
Q psy3301 10 NVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEI--TIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLV 87 (608)
Q Consensus 10 ~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV 87 (608)
.+||+++|++|||||||++++.++.+.....++.+.. .....+....+.+.+||++|++.+......+++.++++++|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 4799999999999999999999999876655544322 22334455567899999999999988889999999999999
Q ss_pred EEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHHH
Q psy3301 88 YSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYYA 150 (608)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~l 150 (608)
||++++.+++.+. .|+..+... ...++|+++|+||+|+..... ++|||++|.|++++|+.+
T Consensus 83 ~d~~~~~s~~~~~-~~~~~~~~~-~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 160 (165)
T cd01868 83 YDITKKQTFENVE-RWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQL 160 (165)
T ss_pred EECcCHHHHHHHH-HHHHHHHHh-CCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 9999999999998 899988752 344689999999999975432 999999999999999999
Q ss_pred HHHH
Q psy3301 151 QKAV 154 (608)
Q Consensus 151 ~~~i 154 (608)
.+.+
T Consensus 161 ~~~i 164 (165)
T cd01868 161 LTEI 164 (165)
T ss_pred HHHh
Confidence 8765
No 74
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.89 E-value=1.1e-22 Score=188.75 Aligned_cols=140 Identities=23% Similarity=0.314 Sum_probs=117.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEec--CccC--CCceeEEEEeCCCCCCChHHHHHHHHhcCcEEE
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIP--PDVT--PEMVPTHIVDYSEVDQTVDELTEEIQKAHVICL 86 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~--~~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iil 86 (608)
+||+++|++|||||||++++.++.+...+.++....... ..+. ...+.+.+|||||++++...+..+++.+|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999998877655554333221 2222 556889999999999999989999999999999
Q ss_pred EEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHH
Q psy3301 87 VYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYY 149 (608)
Q Consensus 87 V~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~ 149 (608)
|||++++++|+.+. .|+..+. ....++|+++|+||+|+..... +++||++|.|++++|.+
T Consensus 81 v~d~~~~~s~~~l~-~~~~~~~--~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 157 (162)
T cd04106 81 VFSTTDRESFEAIE-SWKEKVE--AECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEY 157 (162)
T ss_pred EEECCCHHHHHHHH-HHHHHHH--HhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 99999999999998 7998887 3456899999999999865322 89999999999999999
Q ss_pred HHHH
Q psy3301 150 AQKA 153 (608)
Q Consensus 150 l~~~ 153 (608)
+.+.
T Consensus 158 l~~~ 161 (162)
T cd04106 158 LAEK 161 (162)
T ss_pred HHHh
Confidence 8653
No 75
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.89 E-value=2.5e-22 Score=198.66 Aligned_cols=149 Identities=23% Similarity=0.260 Sum_probs=122.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcc-eEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEE
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEE-ITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYS 89 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d 89 (608)
+||+++|++|||||||+++++++.|...+.++... ......+....+.+.||||+|++.+......++..+|++|+|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 58999999999999999999999998776666532 22233445566889999999999998888888999999999999
Q ss_pred cCChhhHHHHHHhHHHHHhhh--------ccCCCCcEEEEEeCcCCCCCCC------------------cccCcccCcCH
Q psy3301 90 VVDDASIDRLSSHWLPFLRNC--------LVDTCLPIVLVGNKVDLVDYST------------------VESSAKTLKNI 143 (608)
Q Consensus 90 ~~~~~s~~~~~~~~~~~i~~~--------~~~~~~piilv~nK~Dl~~~~~------------------~e~SAk~~~~i 143 (608)
+++++||+.+. .|...+... ....++|+|||+||+|+..... ++|||++|.||
T Consensus 81 v~~~~Sf~~i~-~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI 159 (247)
T cd04143 81 LDNRESFEEVC-RLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL 159 (247)
T ss_pred CCCHHHHHHHH-HHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence 99999999998 777777532 1235789999999999974221 89999999999
Q ss_pred HHHHHHHHHHHhCCCCC
Q psy3301 144 SEMFYYAQKAVLHPMAP 160 (608)
Q Consensus 144 ~~lf~~l~~~i~~~~~~ 160 (608)
+++|+++.+....|...
T Consensus 160 ~elf~~L~~~~~~p~e~ 176 (247)
T cd04143 160 DEMFRALFSLAKLPNEM 176 (247)
T ss_pred HHHHHHHHHHhcccccc
Confidence 99999999987655443
No 76
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.89 E-value=1e-22 Score=191.57 Aligned_cols=142 Identities=27% Similarity=0.389 Sum_probs=120.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCc-ceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEE
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPELVPSKAE-EITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYS 89 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d 89 (608)
+||+++|++|||||||++++..+.+...+.++.. .......+....+.+.+|||+|++.+......+++.+|++++|||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 5899999999999999999999998766555442 223334455566788999999999998888888999999999999
Q ss_pred cCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCC-----------------------------C-cccCccc
Q psy3301 90 VVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYS-----------------------------T-VESSAKT 139 (608)
Q Consensus 90 ~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-----------------------------~-~e~SAk~ 139 (608)
++++.+|+.+...|.+.+.. ...++|+++||||+|+.+.. . ++|||++
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~--~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 158 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKE--YAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT 158 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHh--hCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence 99999999998789998884 36789999999999985431 0 7999999
Q ss_pred CcCHHHHHHHHHHHH
Q psy3301 140 LKNISEMFYYAQKAV 154 (608)
Q Consensus 140 ~~~i~~lf~~l~~~i 154 (608)
|.||+++|+.+++.+
T Consensus 159 ~~gi~~~f~~~~~~~ 173 (174)
T cd04135 159 QKGLKTVFDEAILAI 173 (174)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998876
No 77
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.89 E-value=1.8e-22 Score=189.19 Aligned_cols=144 Identities=25% Similarity=0.318 Sum_probs=119.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcce--EecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEE
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEI--TIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICL 86 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iil 86 (608)
..+||+++|++|||||||+++++++.+.+...++.+.. .....++...+.+.|||++|++++...+..+++.+|++++
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLL 83 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEE
Confidence 46899999999999999999999999877644443322 2233456677889999999999999999999999999999
Q ss_pred EEEcCChhhHHHHHHhHHHHHhhhc---cCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHH
Q psy3301 87 VYSVVDDASIDRLSSHWLPFLRNCL---VDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEM 146 (608)
Q Consensus 87 V~d~~~~~s~~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~l 146 (608)
|||+++++|++.+. .|...+.... ...++|+++|+||+|+..... +++||++|.|+.++
T Consensus 84 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 162 (170)
T cd04116 84 TFAVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAA 162 (170)
T ss_pred EEECCCHHHHHhHH-HHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHH
Confidence 99999999999997 7887765421 235789999999999964321 89999999999999
Q ss_pred HHHHHHH
Q psy3301 147 FYYAQKA 153 (608)
Q Consensus 147 f~~l~~~ 153 (608)
|+.+++.
T Consensus 163 ~~~~~~~ 169 (170)
T cd04116 163 FEEAVRR 169 (170)
T ss_pred HHHHHhh
Confidence 9999875
No 78
>KOG0393|consensus
Probab=99.89 E-value=7.7e-24 Score=195.93 Aligned_cols=149 Identities=30% Similarity=0.438 Sum_probs=133.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCC-cceEecCccC-CCceeEEEEeCCCCCCChHHHHHHHHhcCcEEE
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKA-EEITIPPDVT-PEMVPTHIVDYSEVDQTVDELTEEIQKAHVICL 86 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~-~~~~i~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iil 86 (608)
..+|++|||+.++|||+|+..+..+.|+..+.|+. +.......++ +..+.+.+|||+|+++|...+...+.++|++++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~ 82 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLL 82 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEE
Confidence 46899999999999999999999999999855554 5666677774 888999999999999998877788999999999
Q ss_pred EEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC------------------------------cccC
Q psy3301 87 VYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST------------------------------VESS 136 (608)
Q Consensus 87 V~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~------------------------------~e~S 136 (608)
||++.+++||+++..+|+++++ ...+++|+||||+|.||..+.. +|||
T Consensus 83 cfsv~~p~S~~nv~~kW~pEi~--~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS 160 (198)
T KOG0393|consen 83 CFSVVSPESFENVKSKWIPEIK--HHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS 160 (198)
T ss_pred EEEcCChhhHHHHHhhhhHHHH--hhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence 9999999999999999999999 6679999999999999995421 8999
Q ss_pred cccCcCHHHHHHHHHHHHhCCCC
Q psy3301 137 AKTLKNISEMFYYAQKAVLHPMA 159 (608)
Q Consensus 137 Ak~~~~i~~lf~~l~~~i~~~~~ 159 (608)
|++..|+.++|+.+.+.++.+..
T Consensus 161 a~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 161 ALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred hhhhCCcHHHHHHHHHHHhcccc
Confidence 99999999999999999988654
No 79
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.89 E-value=2.1e-22 Score=193.11 Aligned_cols=148 Identities=22% Similarity=0.245 Sum_probs=115.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceE--ecCccCCCceeEEEEeCCCCCCChHH--------HHHHHHh
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEIT--IPPDVTPEMVPTHIVDYSEVDQTVDE--------LTEEIQK 80 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~~~ 80 (608)
+||+|+|++|||||||+++++++.|...+.++..... ....+.+..+.++||||+|.+.+... ....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999999999876655543221 12234555688999999997654211 2345789
Q ss_pred cCcEEEEEEcCChhhHHHHHHhHHHHHhhhc--cCCCCcEEEEEeCcCCCCCCC------------------cccCcccC
Q psy3301 81 AHVICLVYSVVDDASIDRLSSHWLPFLRNCL--VDTCLPIVLVGNKVDLVDYST------------------VESSAKTL 140 (608)
Q Consensus 81 ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~piilv~nK~Dl~~~~~------------------~e~SAk~~ 140 (608)
+|++++|||+++++||+.+. .|...+.... ...++|++||+||+|+...+. ++|||++|
T Consensus 81 ad~iilv~D~~~~~S~~~~~-~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g 159 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVK-LLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYN 159 (198)
T ss_pred CCEEEEEEECCCHHHHHHHH-HHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCC
Confidence 99999999999999999998 6777665421 246799999999999955321 89999999
Q ss_pred cCHHHHHHHHHHHHhCCCC
Q psy3301 141 KNISEMFYYAQKAVLHPMA 159 (608)
Q Consensus 141 ~~i~~lf~~l~~~i~~~~~ 159 (608)
.||+++|+.+.+.++.+..
T Consensus 160 ~~v~~lf~~i~~~~~~~~~ 178 (198)
T cd04142 160 WHILLLFKELLISATTRGR 178 (198)
T ss_pred CCHHHHHHHHHHHhhccCC
Confidence 9999999999998875443
No 80
>KOG0088|consensus
Probab=99.89 E-value=1.1e-23 Score=181.90 Aligned_cols=146 Identities=27% Similarity=0.351 Sum_probs=124.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCC--cceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEE
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKA--EEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICL 86 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iil 86 (608)
-.+||+++|..-||||||+-|++.++|...--.+. .-.+....+......++||||+|+|+|+.+-+.+++.+|++++
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalL 91 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALL 91 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceEE
Confidence 36899999999999999999999999986521111 1122233455566789999999999999999999999999999
Q ss_pred EEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHH
Q psy3301 87 VYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYY 149 (608)
Q Consensus 87 V~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~ 149 (608)
|||++|++||+.++ .|..+++. ..+..+-++|||||+||.+.+. +++||+.+.||.++|..
T Consensus 92 VyDITDrdSFqKVK-nWV~Elr~-mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~ 169 (218)
T KOG0088|consen 92 VYDITDRDSFQKVK-NWVLELRT-MLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFES 169 (218)
T ss_pred EEeccchHHHHHHH-HHHHHHHH-HhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHH
Confidence 99999999999999 89999997 5777889999999999987665 99999999999999999
Q ss_pred HHHHHhC
Q psy3301 150 AQKAVLH 156 (608)
Q Consensus 150 l~~~i~~ 156 (608)
+-+.++.
T Consensus 170 Lt~~MiE 176 (218)
T KOG0088|consen 170 LTAKMIE 176 (218)
T ss_pred HHHHHHH
Confidence 8777654
No 81
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.89 E-value=2.1e-22 Score=192.50 Aligned_cols=145 Identities=26% Similarity=0.348 Sum_probs=120.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCC-cCCCCCcceEe--cCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEE
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPE-LVPSKAEEITI--PPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLV 87 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~-~~~~~~~~~~i--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV 87 (608)
+||+|+|++|||||||++++..+.+.. .+.++...... ...+....+.+.||||||++++......+++.+|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999998864 34444332221 234455678899999999999988888899999999999
Q ss_pred EEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHHH
Q psy3301 88 YSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYYA 150 (608)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~l 150 (608)
||++++++|+++. .|+..+.. ....++|+++|+||+|+..... +++||++|.|++++|.++
T Consensus 81 ~D~~~~~s~~~~~-~~~~~i~~-~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l 158 (191)
T cd04112 81 YDITNKASFDNIR-AWLTEIKE-YAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAV 158 (191)
T ss_pred EECCCHHHHHHHH-HHHHHHHH-hCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 9999999999998 79988885 3445789999999999964321 999999999999999999
Q ss_pred HHHHhCC
Q psy3301 151 QKAVLHP 157 (608)
Q Consensus 151 ~~~i~~~ 157 (608)
.+.+...
T Consensus 159 ~~~~~~~ 165 (191)
T cd04112 159 AKELKHR 165 (191)
T ss_pred HHHHHHh
Confidence 9988654
No 82
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.89 E-value=2.7e-22 Score=189.82 Aligned_cols=145 Identities=15% Similarity=0.137 Sum_probs=116.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLV 87 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV 87 (608)
++.+||+++|++|||||||++++..+.+.. +.|+...... .+...++.+++||++|++++...+..+++++|++|+|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~-~~pt~g~~~~--~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V 91 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCcc-ccCCcceeEE--EEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 456899999999999999999999888764 3444332222 2344678899999999999999999999999999999
Q ss_pred EEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC--------------------cccCcccCcCHHHHH
Q psy3301 88 YSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST--------------------VESSAKTLKNISEMF 147 (608)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------------------~e~SAk~~~~i~~lf 147 (608)
||++++++++.+...+...+.. ....++|++||+||+|+..... ++|||++|+||.++|
T Consensus 92 ~D~s~~~s~~~~~~~l~~~l~~-~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~ 170 (181)
T PLN00223 92 VDSNDRDRVVEARDELHRMLNE-DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
T ss_pred EeCCcHHHHHHHHHHHHHHhcC-HhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCCCCCHHHHH
Confidence 9999999999887444443332 2335789999999999875432 378999999999999
Q ss_pred HHHHHHHhC
Q psy3301 148 YYAQKAVLH 156 (608)
Q Consensus 148 ~~l~~~i~~ 156 (608)
+++.+.+..
T Consensus 171 ~~l~~~~~~ 179 (181)
T PLN00223 171 DWLSNNIAN 179 (181)
T ss_pred HHHHHHHhh
Confidence 999887754
No 83
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.89 E-value=3e-22 Score=187.38 Aligned_cols=144 Identities=24% Similarity=0.344 Sum_probs=120.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcc--eEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEE
Q psy3301 10 NVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEE--ITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLV 87 (608)
Q Consensus 10 ~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV 87 (608)
.+||+|+|++|||||||++++++..+....+++... ......+....+.+.+|||+|++++......+++.+|++++|
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v 83 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 83 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 479999999999999999999999887765544322 222334455567899999999999988889999999999999
Q ss_pred EEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHHH
Q psy3301 88 YSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYYA 150 (608)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~l 150 (608)
||++++.+++.+. .|+..++. ...+++|+++|+||+|+..... +++||+++.|++++|.++
T Consensus 84 ~d~~~~~s~~~~~-~~~~~~~~-~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~ 161 (168)
T cd01866 84 YDITRRETFNHLT-SWLEDARQ-HSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINT 161 (168)
T ss_pred EECCCHHHHHHHH-HHHHHHHH-hCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999998 89998875 3456899999999999974332 899999999999999999
Q ss_pred HHHHh
Q psy3301 151 QKAVL 155 (608)
Q Consensus 151 ~~~i~ 155 (608)
.+.+.
T Consensus 162 ~~~~~ 166 (168)
T cd01866 162 AKEIY 166 (168)
T ss_pred HHHHH
Confidence 88764
No 84
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.89 E-value=3e-22 Score=188.56 Aligned_cols=143 Identities=18% Similarity=0.143 Sum_probs=114.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLV 87 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV 87 (608)
++.+||+++|++|||||||++++..+.+.. +.++...... .+....+.+.+|||+|++++...+..++++||++|+|
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~-~~~t~~~~~~--~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v 87 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESVT-TIPTIGFNVE--TVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFV 87 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccccceE--EEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 457999999999999999999998887754 3333322221 1233568899999999999999999999999999999
Q ss_pred EEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC--------------------cccCcccCcCHHHHH
Q psy3301 88 YSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST--------------------VESSAKTLKNISEMF 147 (608)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------------------~e~SAk~~~~i~~lf 147 (608)
||++++++++.+...|...+.. ....++|++||+||+|+..... +++||++|.||+++|
T Consensus 88 ~D~t~~~s~~~~~~~l~~~~~~-~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~ 166 (175)
T smart00177 88 VDSNDRDRIDEAREELHRMLNE-DELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGL 166 (175)
T ss_pred EECCCHHHHHHHHHHHHHHhhC-HhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHH
Confidence 9999999999988555555442 2345789999999999975321 479999999999999
Q ss_pred HHHHHHH
Q psy3301 148 YYAQKAV 154 (608)
Q Consensus 148 ~~l~~~i 154 (608)
+++.+.+
T Consensus 167 ~~l~~~~ 173 (175)
T smart00177 167 TWLSNNL 173 (175)
T ss_pred HHHHHHh
Confidence 9997764
No 85
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.89 E-value=4e-22 Score=186.53 Aligned_cols=146 Identities=27% Similarity=0.361 Sum_probs=122.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcc-eEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEE
Q psy3301 10 NVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEE-ITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVY 88 (608)
Q Consensus 10 ~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~ 88 (608)
.+||+++|++|||||||+++++++.+...+.++... ......+....+.+.+|||+|++++...+..+++.++++++||
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 479999999999999999999999987766555432 2233345566688999999999999999999999999999999
Q ss_pred EcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC------------------cccCcccCcCHHHHHHHH
Q psy3301 89 SVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST------------------VESSAKTLKNISEMFYYA 150 (608)
Q Consensus 89 d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~------------------~e~SAk~~~~i~~lf~~l 150 (608)
|++++++++.+. .|...+.......++|+++|+||+|+..... +++||++|.||+++|+++
T Consensus 81 ~~~~~~s~~~~~-~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i 159 (168)
T cd04177 81 SVTSEASLNELG-ELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL 159 (168)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence 999999999998 7888776433456899999999999865331 899999999999999999
Q ss_pred HHHHhC
Q psy3301 151 QKAVLH 156 (608)
Q Consensus 151 ~~~i~~ 156 (608)
.+.++.
T Consensus 160 ~~~~~~ 165 (168)
T cd04177 160 VRQIIC 165 (168)
T ss_pred HHHHhh
Confidence 987653
No 86
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.89 E-value=2.6e-22 Score=185.93 Aligned_cols=138 Identities=17% Similarity=0.133 Sum_probs=110.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEc
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSV 90 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~ 90 (608)
+||+++|++|||||||++++..+.+.. +.|+...... .+....+.+.+||++|++++...+..+++++|++++|||+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~~~~--~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~ 77 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 77 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCcceE--EEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeC
Confidence 589999999999999999998888864 3343322111 2334578899999999999999999999999999999999
Q ss_pred CChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC--------------------cccCcccCcCHHHHHHHH
Q psy3301 91 VDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST--------------------VESSAKTLKNISEMFYYA 150 (608)
Q Consensus 91 ~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------------------~e~SAk~~~~i~~lf~~l 150 (608)
+++.+++.+...|...+.. ....+.|++||+||+|+..... ++|||++|.||+++|+++
T Consensus 78 ~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l 156 (159)
T cd04150 78 NDRERIGEAREELQRMLNE-DELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWL 156 (159)
T ss_pred CCHHHHHHHHHHHHHHHhc-HHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHH
Confidence 9999999998555555543 2335689999999999964321 489999999999999998
Q ss_pred HH
Q psy3301 151 QK 152 (608)
Q Consensus 151 ~~ 152 (608)
.+
T Consensus 157 ~~ 158 (159)
T cd04150 157 SN 158 (159)
T ss_pred hc
Confidence 64
No 87
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.89 E-value=2.8e-22 Score=191.17 Aligned_cols=145 Identities=26% Similarity=0.360 Sum_probs=121.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceE--ecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEE
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEIT--IPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVY 88 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~ 88 (608)
+||+++|++|||||||+++|.++.+...+.++..... ....+....+.+.+|||+|++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 5899999999999999999999998765554443222 23344556788999999999999888999999999999999
Q ss_pred EcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHHHH
Q psy3301 89 SVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYYAQ 151 (608)
Q Consensus 89 d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~l~ 151 (608)
|++++++|+.+. .|+..+... ...+.|+++|+||+|+.+... +++||++|.|++++|.++.
T Consensus 81 d~~~~~s~~~i~-~~~~~i~~~-~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~ 158 (188)
T cd04125 81 DVTDQESFENLK-FWINEINRY-ARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLV 158 (188)
T ss_pred ECcCHHHHHHHH-HHHHHHHHh-CCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 999999999998 699988752 345689999999999975432 8999999999999999999
Q ss_pred HHHhCC
Q psy3301 152 KAVLHP 157 (608)
Q Consensus 152 ~~i~~~ 157 (608)
+.+...
T Consensus 159 ~~~~~~ 164 (188)
T cd04125 159 KLIIKR 164 (188)
T ss_pred HHHHHH
Confidence 998653
No 88
>KOG0087|consensus
Probab=99.88 E-value=2.7e-23 Score=189.80 Aligned_cols=148 Identities=21% Similarity=0.221 Sum_probs=130.4
Q ss_pred CCCceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecceEe-------CCcceeEeeeeccccc---
Q psy3301 405 TTRNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINTTTV-------YGQEKYLVLKEILVRD--- 474 (608)
Q Consensus 405 ~~r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~~~v-------~Gqe~~~~l~~~~~~~--- 474 (608)
-..++||+++||++|||||-||.||..++|..+..+|+++.+....+.|++..+ +|||||+.++..||++
T Consensus 10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvG 89 (222)
T KOG0087|consen 10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVG 89 (222)
T ss_pred ccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccce
Confidence 457899999999999999999999999999999999999844446666666554 9999999999999999
Q ss_pred ---ccccCCCCcc--cccccc------cCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHH
Q psy3301 475 ---EQLPVLLPVD--VDCDKY------FSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDRE 541 (608)
Q Consensus 475 ---v~d~~l~~~~--~~~~~~------~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e 541 (608)
||| ++... +++.+| +.+++++|+|||||+||.+.|.+..+++..||++.++. ++++| ...||++
T Consensus 90 AllVYD--ITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~-f~EtSAl~~tNVe~ 166 (222)
T KOG0087|consen 90 ALLVYD--ITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLF-FLETSALDATNVEK 166 (222)
T ss_pred eEEEEe--chhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCce-EEEecccccccHHH
Confidence 899 98887 666655 34689999999999999999999999999999999997 89999 7999999
Q ss_pred HHHHHHHHHcCCCC
Q psy3301 542 VFVKLATMAAFPRF 555 (608)
Q Consensus 542 ~F~~l~~~a~~p~~ 555 (608)
+|..+..++..-.+
T Consensus 167 aF~~~l~~I~~~vs 180 (222)
T KOG0087|consen 167 AFERVLTEIYKIVS 180 (222)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998877653
No 89
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.88 E-value=1.3e-22 Score=190.69 Aligned_cols=140 Identities=31% Similarity=0.432 Sum_probs=117.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCC-cceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEE
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPELVPSKA-EEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYS 89 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d 89 (608)
+||+++|++|||||||+.++.++.|..++.++. +.......++...+.+.+|||+|++++...+..+++.+|++++|||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 589999999999999999999999887766654 2223344455566889999999999998888888999999999999
Q ss_pred cCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCC-----------------------------C-cccCccc
Q psy3301 90 VVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYS-----------------------------T-VESSAKT 139 (608)
Q Consensus 90 ~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-----------------------------~-~e~SAk~ 139 (608)
++++++|+.+...|+..+.. ...++|+++||||+|+.... . ++|||++
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRK--HNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHh--hCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 99999999987689988873 34579999999999986421 0 8999999
Q ss_pred CcCHHHHHHHHHH
Q psy3301 140 LKNISEMFYYAQK 152 (608)
Q Consensus 140 ~~~i~~lf~~l~~ 152 (608)
|.||+++|+.++-
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999988764
No 90
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.88 E-value=2e-22 Score=189.72 Aligned_cols=142 Identities=26% Similarity=0.421 Sum_probs=118.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcc-eEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEE
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEE-ITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYS 89 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d 89 (608)
.||+++|++|||||||++++.++.+...+.++... ......+....+.+.+|||+|++.+.......++++|++++|||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~ 81 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 81 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEE
Confidence 58999999999999999999999988765554432 22233455667889999999999888777778899999999999
Q ss_pred cCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCC-----------------------------C-cccCccc
Q psy3301 90 VVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYS-----------------------------T-VESSAKT 139 (608)
Q Consensus 90 ~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-----------------------------~-~e~SAk~ 139 (608)
++++++|+.+...|++.+.. ...++|+++|+||+|+.... . ++|||++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 82 IDSPDSLENIPEKWTPEVKH--FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHh--hCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 99999999998789998884 34689999999999985421 0 8999999
Q ss_pred CcCHHHHHHHHHHHH
Q psy3301 140 LKNISEMFYYAQKAV 154 (608)
Q Consensus 140 ~~~i~~lf~~l~~~i 154 (608)
|.|++++|+++++++
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998765
No 91
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.88 E-value=2.3e-21 Score=198.45 Aligned_cols=133 Identities=21% Similarity=0.207 Sum_probs=93.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCc-CCCCCcceEecCccCCCceeEEEEeCCCCCCCh-H--------HHHHHHHh
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPEL-VPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTV-D--------ELTEEIQK 80 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~-~--------~~~~~~~~ 80 (608)
-.|+|+|.||||||||+|||++.+.+.. -.|..+++.+.......+..+.++||+|.+... + +....+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 4799999999999999999999987654 334446777666666777789999999987433 1 23556889
Q ss_pred cCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-------------cccCcccCcCHHHHH
Q psy3301 81 AHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-------------VESSAKTLKNISEMF 147 (608)
Q Consensus 81 ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-------------~e~SAk~~~~i~~lf 147 (608)
||++|+|+|....-+-+.- .....++ ..++|+|||+||+|-..... +.+||..|.|+.++.
T Consensus 84 ADvilfvVD~~~Git~~D~--~ia~~Lr----~~~kpviLvvNK~D~~~~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLl 157 (444)
T COG1160 84 ADVILFVVDGREGITPADE--EIAKILR----RSKKPVILVVNKIDNLKAEELAYEFYSLGFGEPVPISAEHGRGIGDLL 157 (444)
T ss_pred CCEEEEEEeCCCCCCHHHH--HHHHHHH----hcCCCEEEEEEcccCchhhhhHHHHHhcCCCCceEeehhhccCHHHHH
Confidence 9999999998875443321 2333333 24689999999999653222 555665555555555
Q ss_pred HH
Q psy3301 148 YY 149 (608)
Q Consensus 148 ~~ 149 (608)
+.
T Consensus 158 d~ 159 (444)
T COG1160 158 DA 159 (444)
T ss_pred HH
Confidence 44
No 92
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.88 E-value=3.5e-22 Score=185.90 Aligned_cols=141 Identities=29% Similarity=0.367 Sum_probs=116.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcC--CCCCcCCCCCcceEe--cCcc-CCCceeEEEEeCCCCCCChHHHHHHHHhcCcEE
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSE--EFPELVPSKAEEITI--PPDV-TPEMVPTHIVDYSEVDQTVDELTEEIQKAHVIC 85 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~--~~~~~~~~~~~~~~i--~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 85 (608)
+||+++|++|||||||++++..+ .+..++.++...... ...+ ....+.+.+|||+|++.+...+..+++++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 566666655432221 1122 356689999999999999888899999999999
Q ss_pred EEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHH
Q psy3301 86 LVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFY 148 (608)
Q Consensus 86 lV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~ 148 (608)
+|||++++++|+.+. .|+..+.. ...++|+++|+||+|+.+... ++|||++|.|++++|+
T Consensus 81 ~v~d~~~~~s~~~~~-~~~~~~~~--~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 157 (164)
T cd04101 81 LVYDVSNKASFENCS-RWVNKVRT--ASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFE 157 (164)
T ss_pred EEEECcCHHHHHHHH-HHHHHHHH--hCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHH
Confidence 999999999999987 89998874 336789999999999965432 8999999999999999
Q ss_pred HHHHHH
Q psy3301 149 YAQKAV 154 (608)
Q Consensus 149 ~l~~~i 154 (608)
.+.+.+
T Consensus 158 ~l~~~~ 163 (164)
T cd04101 158 SLARAF 163 (164)
T ss_pred HHHHHh
Confidence 998865
No 93
>PLN03110 Rab GTPase; Provisional
Probab=99.88 E-value=3.8e-22 Score=194.31 Aligned_cols=147 Identities=25% Similarity=0.327 Sum_probs=124.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcce--EecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEE
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEI--TIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICL 86 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iil 86 (608)
..+||+++|++|||||||+++|++..+...+.++.... .....+....+.+.||||+|++++......+++.++++++
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~il 90 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEE
Confidence 46899999999999999999999999876655544322 2233445667899999999999999999999999999999
Q ss_pred EEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHH
Q psy3301 87 VYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYY 149 (608)
Q Consensus 87 V~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~ 149 (608)
|||++++.+|+.+. .|+..+.. ....++|+++|+||+|+..... +++||++|.|++++|..
T Consensus 91 v~d~~~~~s~~~~~-~~~~~~~~-~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~ 168 (216)
T PLN03110 91 VYDITKRQTFDNVQ-RWLRELRD-HADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQT 168 (216)
T ss_pred EEECCChHHHHHHH-HHHHHHHH-hCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999998 89988875 3446899999999999865432 89999999999999999
Q ss_pred HHHHHhCC
Q psy3301 150 AQKAVLHP 157 (608)
Q Consensus 150 l~~~i~~~ 157 (608)
+.+.+.+.
T Consensus 169 l~~~i~~~ 176 (216)
T PLN03110 169 ILLEIYHI 176 (216)
T ss_pred HHHHHHHH
Confidence 99988653
No 94
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.88 E-value=1e-21 Score=191.73 Aligned_cols=142 Identities=27% Similarity=0.326 Sum_probs=113.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCC-CcCCCCCc--ceEecCccCCCceeEEEEeCCCCCCChHHHHHHHH-hcCcEEE
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAE--EITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQ-KAHVICL 86 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~-~~~~~~~~--~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~-~ad~iil 86 (608)
+||+++|++|||||||+++|+.+.+. ..++++.. .......+....+.+.+|||+|++ ......+++ .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 58999999999999999999988886 44444432 222233455567889999999988 223345566 8999999
Q ss_pred EEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHH
Q psy3301 87 VYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYY 149 (608)
Q Consensus 87 V~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~ 149 (608)
|||++++.||+.+. .|+..+.......++|+|+|+||+|+..... ++|||++|.||+++|++
T Consensus 79 V~d~td~~S~~~~~-~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~ 157 (221)
T cd04148 79 VYSVTDRSSFERAS-ELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEG 157 (221)
T ss_pred EEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 99999999999988 7888777533346899999999999965432 89999999999999999
Q ss_pred HHHHHh
Q psy3301 150 AQKAVL 155 (608)
Q Consensus 150 l~~~i~ 155 (608)
+.+.+.
T Consensus 158 l~~~~~ 163 (221)
T cd04148 158 IVRQIR 163 (221)
T ss_pred HHHHHH
Confidence 999885
No 95
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.88 E-value=4.7e-22 Score=186.19 Aligned_cols=145 Identities=19% Similarity=0.200 Sum_probs=119.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCC-CcCCCCCcc-eE-ecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEE-IT-IPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVI 84 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~-~~~~~~~~~-~~-i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 84 (608)
++.+||+++|++|||||||+++++++.|. .++.++... .. ....+.+..+.+.+||++|++.+......+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 56799999999999999999999999997 666665432 22 2234455667899999999999988888899999999
Q ss_pred EEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCC-----C-------------cccCcccCcCHHHH
Q psy3301 85 CLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYS-----T-------------VESSAKTLKNISEM 146 (608)
Q Consensus 85 ilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-----~-------------~e~SAk~~~~i~~l 146 (608)
++|||++++.+|+.+. .|+..+.. ..++|+++|+||+|+.+.. . +++||++|.|++++
T Consensus 82 llv~d~~~~~s~~~~~-~~~~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 157 (169)
T cd01892 82 CLVYDSSDPKSFSYCA-EVYKKYFM---LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNEL 157 (169)
T ss_pred EEEEeCCCHHHHHHHH-HHHHHhcc---CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHH
Confidence 9999999999999987 77776542 2478999999999995432 0 78999999999999
Q ss_pred HHHHHHHHhC
Q psy3301 147 FYYAQKAVLH 156 (608)
Q Consensus 147 f~~l~~~i~~ 156 (608)
|..+.+.+..
T Consensus 158 f~~l~~~~~~ 167 (169)
T cd01892 158 FTKLATAAQY 167 (169)
T ss_pred HHHHHHHhhC
Confidence 9999998764
No 96
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.88 E-value=6.1e-22 Score=187.60 Aligned_cols=145 Identities=17% Similarity=0.132 Sum_probs=116.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLV 87 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV 87 (608)
++.+||+++|++|||||||++++..+.+.. +.++...... .+...++.+.+|||+|++.+...+..+++.+|++|+|
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v 91 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFV 91 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 457999999999999999999999888765 3333332222 2334678999999999999999999999999999999
Q ss_pred EEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC--------------------cccCcccCcCHHHHH
Q psy3301 88 YSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST--------------------VESSAKTLKNISEMF 147 (608)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------------------~e~SAk~~~~i~~lf 147 (608)
||++++++++.....|.+.+.. ....+.|++||+||+|+..... +++||++|.|++++|
T Consensus 92 ~D~t~~~s~~~~~~~l~~~~~~-~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~ 170 (182)
T PTZ00133 92 VDSNDRERIGDAREELERMLSE-DELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGL 170 (182)
T ss_pred EeCCCHHHHHHHHHHHHHHHhC-HhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHH
Confidence 9999999999988555555443 2335689999999999865321 478999999999999
Q ss_pred HHHHHHHhC
Q psy3301 148 YYAQKAVLH 156 (608)
Q Consensus 148 ~~l~~~i~~ 156 (608)
+++.+.+.+
T Consensus 171 ~~l~~~i~~ 179 (182)
T PTZ00133 171 DWLSANIKK 179 (182)
T ss_pred HHHHHHHHH
Confidence 999887653
No 97
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.88 E-value=4.6e-22 Score=184.48 Aligned_cols=141 Identities=27% Similarity=0.393 Sum_probs=117.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEec--CccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEE
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIP--PDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVY 88 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~ 88 (608)
+||+++|++|||||||++++++..+.....++.+..... ..+....+.+.+|||||++.+...+..+++.+|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 489999999999999999999999877655555433322 233445578999999999999988999999999999999
Q ss_pred EcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHHHH
Q psy3301 89 SVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYYAQ 151 (608)
Q Consensus 89 d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~l~ 151 (608)
|++++++|+.+. .|+..+.. ....+.|+++|+||+|+..... +++||+++.|++++|.++.
T Consensus 81 d~~~~~s~~~~~-~~~~~~~~-~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~ 158 (161)
T cd01861 81 DITNRQSFDNTD-KWIDDVRD-ERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIA 158 (161)
T ss_pred ECcCHHHHHHHH-HHHHHHHH-hCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999999999998 78888764 2334799999999999954322 8999999999999999987
Q ss_pred HH
Q psy3301 152 KA 153 (608)
Q Consensus 152 ~~ 153 (608)
+.
T Consensus 159 ~~ 160 (161)
T cd01861 159 SA 160 (161)
T ss_pred Hh
Confidence 64
No 98
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.88 E-value=4.5e-22 Score=185.53 Aligned_cols=143 Identities=29% Similarity=0.431 Sum_probs=115.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCc-ceEecCccCCCceeEEEEeCCCCCC-ChHHHHHHHHhcCcEEEEEE
Q psy3301 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAE-EITIPPDVTPEMVPTHIVDYSEVDQ-TVDELTEEIQKAHVICLVYS 89 (608)
Q Consensus 12 kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~ad~iilV~d 89 (608)
||+++|++|||||||+++++.+.+...++++.. .......++...+.+.+|||+|++. +......+++.+|++++|||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 689999999999999999999888766666542 2223334556677899999999985 34556788999999999999
Q ss_pred cCChhhHHHHHHhHHHHHhhhcc-CCCCcEEEEEeCcCCCCCCC-----------------cccCcccC-cCHHHHHHHH
Q psy3301 90 VVDDASIDRLSSHWLPFLRNCLV-DTCLPIVLVGNKVDLVDYST-----------------VESSAKTL-KNISEMFYYA 150 (608)
Q Consensus 90 ~~~~~s~~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~-~~i~~lf~~l 150 (608)
+++++||+.+. .|+..+..... ..++|+++||||+|+..... ++|||++| .||+++|..+
T Consensus 81 ~~~~~s~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l 159 (165)
T cd04146 81 ITDRSSFDEIS-QLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL 159 (165)
T ss_pred CCCHHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence 99999999998 78888775322 45899999999999864322 89999999 5999999999
Q ss_pred HHHHh
Q psy3301 151 QKAVL 155 (608)
Q Consensus 151 ~~~i~ 155 (608)
.+.+.
T Consensus 160 ~~~~~ 164 (165)
T cd04146 160 CREVR 164 (165)
T ss_pred HHHHh
Confidence 87653
No 99
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.88 E-value=4.3e-22 Score=186.65 Aligned_cols=144 Identities=24% Similarity=0.383 Sum_probs=118.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcce--EecCccCCCceeEEEEeCCCCCCCh-HHHHHHHHhcCcEEE
Q psy3301 10 NVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEI--TIPPDVTPEMVPTHIVDYSEVDQTV-DELTEEIQKAHVICL 86 (608)
Q Consensus 10 ~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~i~Dt~G~~~~~-~~~~~~~~~ad~iil 86 (608)
.+||+++|++|||||||+++++.+.+...+.++.... .....+....+.+.+|||+|++.+. ..+..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 5899999999999999999999998876555443222 2233445566889999999998886 457788999999999
Q ss_pred EEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCccc---CcCHHHH
Q psy3301 87 VYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKT---LKNISEM 146 (608)
Q Consensus 87 V~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~---~~~i~~l 146 (608)
|||++++.+|+.+. .|+..+.......++|+++|+||+|+..... ++|||++ +.||.++
T Consensus 82 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~ 160 (170)
T cd04115 82 VYDVTNMASFHSLP-SWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAI 160 (170)
T ss_pred EEECCCHHHHHhHH-HHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHH
Confidence 99999999999998 7998887543446799999999999865432 8999999 8999999
Q ss_pred HHHHHHHH
Q psy3301 147 FYYAQKAV 154 (608)
Q Consensus 147 f~~l~~~i 154 (608)
|..+.+.+
T Consensus 161 f~~l~~~~ 168 (170)
T cd04115 161 FMTLAHKL 168 (170)
T ss_pred HHHHHHHh
Confidence 99988765
No 100
>PLN03118 Rab family protein; Provisional
Probab=99.88 E-value=9.3e-22 Score=191.10 Aligned_cols=150 Identities=25% Similarity=0.283 Sum_probs=123.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcce--EecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcE
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEI--TIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVI 84 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 84 (608)
....+||+|+|++|||||||+++|++..+.. +.++.... .....++...+.+.||||+|++++...+..+++.+|++
T Consensus 11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 89 (211)
T PLN03118 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVED-LAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGI 89 (211)
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCC-cCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 4457899999999999999999999988754 33333222 22233455668899999999999999999999999999
Q ss_pred EEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHH
Q psy3301 85 CLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMF 147 (608)
Q Consensus 85 ilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf 147 (608)
++|||++++++|+.+...|...+.......+.|+++|+||+|+..... ++|||+++.|++++|
T Consensus 90 vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~ 169 (211)
T PLN03118 90 ILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCF 169 (211)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 999999999999999877888776433345689999999999975432 899999999999999
Q ss_pred HHHHHHHhCC
Q psy3301 148 YYAQKAVLHP 157 (608)
Q Consensus 148 ~~l~~~i~~~ 157 (608)
+++.+.+...
T Consensus 170 ~~l~~~~~~~ 179 (211)
T PLN03118 170 EELALKIMEV 179 (211)
T ss_pred HHHHHHHHhh
Confidence 9999998653
No 101
>KOG0080|consensus
Probab=99.88 E-value=3.1e-23 Score=179.80 Aligned_cols=144 Identities=19% Similarity=0.169 Sum_probs=124.6
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecceEe-------CCcceeEeeeeccccc-----
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINTTTV-------YGQEKYLVLKEILVRD----- 474 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~~~v-------~Gqe~~~~l~~~~~~~----- 474 (608)
...||+++||++|||||||+.||+.+.|.+..+.|+++++-...+.|++..+ +|||+|+.|++.|||+
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiI 88 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGII 88 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeE
Confidence 4569999999999999999999999999999887888833235566666554 9999999999999999
Q ss_pred -ccccCCCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHH
Q psy3301 475 -EQLPVLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREV 542 (608)
Q Consensus 475 -v~d~~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~ 542 (608)
||| ++.++ ...+ -|-..+++-.++||||.|-+..|.+.-+++..||+++++. ++++| +..||+.+
T Consensus 89 lVYD--VT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~L-FiE~SAkt~~~V~~~ 165 (209)
T KOG0080|consen 89 LVYD--VTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCL-FIECSAKTRENVQCC 165 (209)
T ss_pred EEEE--ccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcE-EEEcchhhhccHHHH
Confidence 899 99988 3334 3444688999999999999888999999999999999998 99999 89999999
Q ss_pred HHHHHHHHcCC
Q psy3301 543 FVKLATMAAFP 553 (608)
Q Consensus 543 F~~l~~~a~~p 553 (608)
|..++..++..
T Consensus 166 FeelveKIi~t 176 (209)
T KOG0080|consen 166 FEELVEKIIET 176 (209)
T ss_pred HHHHHHHHhcC
Confidence 99999998664
No 102
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.87 E-value=8.8e-22 Score=188.56 Aligned_cols=143 Identities=25% Similarity=0.345 Sum_probs=118.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCC-cCCCCCcceE--ecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEE
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPE-LVPSKAEEIT--IPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLV 87 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~-~~~~~~~~~~--i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV 87 (608)
+||+|+|++|||||||+++|+++.+.. .+.++..... ....+....+.+.+|||+|++++......+++.+|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999999875 3444443222 2334555667889999999999988888889999999999
Q ss_pred EEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCC----C-----------------cccCcccCcCHHHH
Q psy3301 88 YSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYS----T-----------------VESSAKTLKNISEM 146 (608)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~----~-----------------~e~SAk~~~~i~~l 146 (608)
||++++.+|+.+. .|+..+.. ...++|+++|+||+|+.... . +++||++|.|++++
T Consensus 81 ~d~~~~~s~~~~~-~~~~~i~~--~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 157 (193)
T cd04118 81 YDLTDSSSFERAK-FWVKELQN--LEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDEL 157 (193)
T ss_pred EECCCHHHHHHHH-HHHHHHHh--cCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 9999999999987 79998884 35579999999999986421 0 78999999999999
Q ss_pred HHHHHHHHhC
Q psy3301 147 FYYAQKAVLH 156 (608)
Q Consensus 147 f~~l~~~i~~ 156 (608)
|+++.+.+..
T Consensus 158 ~~~i~~~~~~ 167 (193)
T cd04118 158 FQKVAEDFVS 167 (193)
T ss_pred HHHHHHHHHH
Confidence 9999998864
No 103
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.87 E-value=1.2e-21 Score=182.12 Aligned_cols=143 Identities=29% Similarity=0.399 Sum_probs=120.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCc--ceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEE
Q psy3301 10 NVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAE--EITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLV 87 (608)
Q Consensus 10 ~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV 87 (608)
.+||+++|++|||||||+++++++.+.....++.. ..+....+....+.+.+||++|++++...+..+++.+|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 47999999999999999999999998774444332 2233445666778899999999999988888899999999999
Q ss_pred EEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHHH
Q psy3301 88 YSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYYA 150 (608)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~l 150 (608)
||++++++++.+. .|+..+.. ....++|+++|+||+|+..... +++||++|.|+.++|+++
T Consensus 81 ~d~~~~~s~~~~~-~~~~~~~~-~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 158 (163)
T cd01860 81 YDITSEESFEKAK-SWVKELQR-NASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEI 158 (163)
T ss_pred EECcCHHHHHHHH-HHHHHHHH-hCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 9999999999998 88888875 3347899999999999874322 999999999999999999
Q ss_pred HHHH
Q psy3301 151 QKAV 154 (608)
Q Consensus 151 ~~~i 154 (608)
.+.+
T Consensus 159 ~~~l 162 (163)
T cd01860 159 AKKL 162 (163)
T ss_pred HHHh
Confidence 8875
No 104
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.87 E-value=1.4e-21 Score=182.97 Aligned_cols=141 Identities=14% Similarity=0.104 Sum_probs=112.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEcC
Q psy3301 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSVV 91 (608)
Q Consensus 12 kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~ 91 (608)
||+++|++|||||||+++|.+..+.. +.++...... .+...++.+.+|||+|++.+...+..+++.+|++++|||++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s 77 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSS 77 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCC
Confidence 68999999999999999999987764 3333322221 23446789999999999999888999999999999999999
Q ss_pred ChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC---------------------cccCcccCcCHHHHHHHH
Q psy3301 92 DDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST---------------------VESSAKTLKNISEMFYYA 150 (608)
Q Consensus 92 ~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~---------------------~e~SAk~~~~i~~lf~~l 150 (608)
++++++.+. .|+..+.......+.|++||+||+|+..... ++|||++|.||+++|+++
T Consensus 78 ~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l 156 (169)
T cd04158 78 HRDRVSEAH-SELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWL 156 (169)
T ss_pred cHHHHHHHH-HHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHH
Confidence 999999998 5555554222334689999999999864311 578999999999999999
Q ss_pred HHHHhC
Q psy3301 151 QKAVLH 156 (608)
Q Consensus 151 ~~~i~~ 156 (608)
.+.+..
T Consensus 157 ~~~~~~ 162 (169)
T cd04158 157 SRQLVA 162 (169)
T ss_pred HHHHhh
Confidence 887643
No 105
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.87 E-value=1.7e-21 Score=181.37 Aligned_cols=135 Identities=20% Similarity=0.217 Sum_probs=109.7
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEcCC
Q psy3301 13 ILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSVVD 92 (608)
Q Consensus 13 I~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~~ 92 (608)
|+++|++|||||||+++|+++.+...+.++...... .+...++.+.+||++|++++...+..+++.+|++++|||+++
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~--~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~ 79 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSV--AIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSAD 79 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcceE--EEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCC
Confidence 799999999999999999999887665555433222 345567899999999999999999999999999999999999
Q ss_pred hhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC---------------------------cccCcccCcCHHH
Q psy3301 93 DASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST---------------------------VESSAKTLKNISE 145 (608)
Q Consensus 93 ~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~---------------------------~e~SAk~~~~i~~ 145 (608)
+.++..+. .|+..+.. ...++|+++|+||+|+..... -+|||++++||.+
T Consensus 80 ~~s~~~~~-~~l~~~~~--~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~ 156 (164)
T cd04162 80 SERLPLAR-QELHQLLQ--HPPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKD 156 (164)
T ss_pred HHHHHHHH-HHHHHHHh--CCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHH
Confidence 99999988 66666652 236899999999999865322 4455555999999
Q ss_pred HHHHHHH
Q psy3301 146 MFYYAQK 152 (608)
Q Consensus 146 lf~~l~~ 152 (608)
+|+.+++
T Consensus 157 ~~~~~~~ 163 (164)
T cd04162 157 LLSQLIN 163 (164)
T ss_pred HHHHHhc
Confidence 9998764
No 106
>PLN03108 Rab family protein; Provisional
Probab=99.87 E-value=2.4e-21 Score=187.92 Aligned_cols=146 Identities=23% Similarity=0.336 Sum_probs=120.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcce--EecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEE
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEI--TIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICL 86 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iil 86 (608)
..+||+|+|++|||||||+++|++..+.....++.... .....+....+.+.+|||+|++.+......+++.+|++++
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vl 84 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence 45899999999999999999999998877654443322 1123344556789999999999998888999999999999
Q ss_pred EEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHH
Q psy3301 87 VYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYY 149 (608)
Q Consensus 87 V~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~ 149 (608)
|||++++.+|+.+. .|+..+.. ....++|+++|+||+|+..... +++||+++.||+++|.+
T Consensus 85 v~D~~~~~s~~~l~-~~~~~~~~-~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~ 162 (210)
T PLN03108 85 VYDITRRETFNHLA-SWLEDARQ-HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 162 (210)
T ss_pred EEECCcHHHHHHHH-HHHHHHHH-hcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999997 78887764 3446899999999999976432 89999999999999999
Q ss_pred HHHHHhC
Q psy3301 150 AQKAVLH 156 (608)
Q Consensus 150 l~~~i~~ 156 (608)
+.+.+..
T Consensus 163 l~~~~~~ 169 (210)
T PLN03108 163 TAAKIYK 169 (210)
T ss_pred HHHHHHH
Confidence 9888764
No 107
>KOG0394|consensus
Probab=99.87 E-value=2.4e-22 Score=179.02 Aligned_cols=146 Identities=18% Similarity=0.257 Sum_probs=127.4
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecceEe-------CCcceeEeeeeccccc-----
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINTTTV-------YGQEKYLVLKEILVRD----- 474 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~~~v-------~Gqe~~~~l~~~~~~~----- 474 (608)
+..+||+++|++|||||||+++|+.+.|...|..|++.++....+.|+.-.+ +|||||..|.-..||+
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv 86 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV 86 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence 5789999999999999999999999999999999999977778888886544 9999999999999998
Q ss_pred -ccccCCCCcc--cccccc-------c---CCCCCcEEEEEeCCCCCc--chhcccccHHHHHHHcCCCCceEEc--cCC
Q psy3301 475 -EQLPVLLPVD--VDCDKY-------F---STSKIPVMLVAGKSDMPR--ARQDYLMQPDIFCETHKLSPAHSFS--AAN 537 (608)
Q Consensus 475 -v~d~~l~~~~--~~~~~~-------~---~~~~~p~ilVgnK~DL~~--~~~~~~~~~~~~~~~~~~~~~~~~S--~~~ 537 (608)
+|| +.+.+ ++++.| . .....|.|++|||.|++. .|+++...+.+||+..|--|+|++| ...
T Consensus 87 lvyd--v~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~ 164 (210)
T KOG0394|consen 87 LVYD--VNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEAT 164 (210)
T ss_pred EEee--cCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccc
Confidence 788 77766 555522 1 135799999999999985 3899999999999999988899999 899
Q ss_pred CHHHHHHHHHHHHcCCC
Q psy3301 538 NDREVFVKLATMAAFPR 554 (608)
Q Consensus 538 ~v~e~F~~l~~~a~~p~ 554 (608)
||.++|..+++.|+.-.
T Consensus 165 NV~~AFe~ia~~aL~~E 181 (210)
T KOG0394|consen 165 NVDEAFEEIARRALANE 181 (210)
T ss_pred cHHHHHHHHHHHHHhcc
Confidence 99999999999998765
No 108
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.87 E-value=2.5e-21 Score=179.52 Aligned_cols=142 Identities=26% Similarity=0.341 Sum_probs=117.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcce--EecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEE
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEI--TIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVY 88 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~ 88 (608)
+||+++|++|||||||+++|.+..+.....++.... .....+....+.+.+|||+|++.+.......++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 689999999999999999999998876544443322 122234556688999999999999888888999999999999
Q ss_pred EcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC----------------cccCcccCcCHHHHHHHHHH
Q psy3301 89 SVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST----------------VESSAKTLKNISEMFYYAQK 152 (608)
Q Consensus 89 d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------------~e~SAk~~~~i~~lf~~l~~ 152 (608)
|++++.+|+.+. .|++.+.......+.|+++|+||+|+..... +++||++|.|++++++.+.+
T Consensus 81 d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 81 DVTRRDTFTNLE-TWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred ECCCHHHHHhHH-HHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence 999999999988 6988887544567899999999999974332 89999999999999999876
Q ss_pred H
Q psy3301 153 A 153 (608)
Q Consensus 153 ~ 153 (608)
.
T Consensus 160 ~ 160 (161)
T cd01863 160 K 160 (161)
T ss_pred h
Confidence 5
No 109
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.87 E-value=2.1e-21 Score=180.50 Aligned_cols=143 Identities=32% Similarity=0.413 Sum_probs=118.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcce--EecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEE
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEI--TIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVY 88 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~ 88 (608)
+||+++|++|||||||++++.+..+.....++.+.. .....+....+.+.+||++|++.+......+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 589999999999999999999998866544443322 222334455578999999999999888899999999999999
Q ss_pred EcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHHHH
Q psy3301 89 SVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYYAQ 151 (608)
Q Consensus 89 d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~l~ 151 (608)
|++++.+++.+. .|+..+... ...++|+++|+||+|+..... +++||++|.|++++|+++.
T Consensus 81 d~~~~~s~~~~~-~~l~~~~~~-~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~ 158 (164)
T smart00175 81 DITNRESFENLK-NWLKELREY-ADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELA 158 (164)
T ss_pred ECCCHHHHHHHH-HHHHHHHHh-CCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 999999999998 699888753 336899999999999876332 9999999999999999999
Q ss_pred HHHh
Q psy3301 152 KAVL 155 (608)
Q Consensus 152 ~~i~ 155 (608)
+.+.
T Consensus 159 ~~~~ 162 (164)
T smart00175 159 REIL 162 (164)
T ss_pred HHHh
Confidence 8764
No 110
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.87 E-value=2.7e-21 Score=183.53 Aligned_cols=147 Identities=19% Similarity=0.236 Sum_probs=116.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCC-cceEecCcc-CCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEE
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKA-EEITIPPDV-TPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICL 86 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~-~~~~i~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iil 86 (608)
..+||+++|++|||||||++++..+.+....+... ....+...+ ...++.+.+|||+|++++...+..+++.+|++++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 36899999999999999999999988876543221 111222222 3356889999999999998889999999999999
Q ss_pred EEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC---------------------cccCcccCcCHHH
Q psy3301 87 VYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST---------------------VESSAKTLKNISE 145 (608)
Q Consensus 87 V~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~---------------------~e~SAk~~~~i~~ 145 (608)
|||++++.+++.+. .|+..+.......++|++||+||+|+..... ++|||++|.|+++
T Consensus 82 v~D~~~~~~~~~~~-~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 160 (183)
T cd04152 82 VVDSVDVERMEEAK-TELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQE 160 (183)
T ss_pred EEECCCHHHHHHHH-HHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHH
Confidence 99999999998887 5666555322345789999999999864210 6899999999999
Q ss_pred HHHHHHHHHhC
Q psy3301 146 MFYYAQKAVLH 156 (608)
Q Consensus 146 lf~~l~~~i~~ 156 (608)
+|+++.+.+..
T Consensus 161 l~~~l~~~l~~ 171 (183)
T cd04152 161 GLEKLYEMILK 171 (183)
T ss_pred HHHHHHHHHHH
Confidence 99999988864
No 111
>KOG0086|consensus
Probab=99.86 E-value=1e-22 Score=174.82 Aligned_cols=145 Identities=21% Similarity=0.282 Sum_probs=125.3
Q ss_pred CCCceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCce-EecceEe-------CCcceeEeeeeccccc--
Q psy3301 405 TTRNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPY-TINTTTV-------YGQEKYLVLKEILVRD-- 474 (608)
Q Consensus 405 ~~r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~-~i~~~~v-------~Gqe~~~~l~~~~~~~-- 474 (608)
+..+.||++|+|+.|.||||||++|+.+.|..+...|+++ +|..++ .+.+..+ +|||+|+...+.||++
T Consensus 5 tYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGv-eFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAA 83 (214)
T KOG0086|consen 5 TYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGV-EFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAA 83 (214)
T ss_pred hhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeee-eecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcccc
Confidence 4568899999999999999999999999999998888988 565443 3444333 9999999999999999
Q ss_pred ----ccccCCCCcc--cccc------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHH
Q psy3301 475 ----EQLPVLLPVD--VDCD------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDR 540 (608)
Q Consensus 475 ----v~d~~l~~~~--~~~~------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~ 540 (608)
||| +++++ ...- +....+++-+||+|||.||.++|+++..++.+||++..+. ++++| +|+||+
T Consensus 84 GAlLVYD--~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~-flETSa~TGeNVE 160 (214)
T KOG0086|consen 84 GALLVYD--ITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELM-FLETSALTGENVE 160 (214)
T ss_pred ceEEEEe--ccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhccccee-eeeecccccccHH
Confidence 899 99888 2222 4456789999999999999999999999999999999995 88899 999999
Q ss_pred HHHHHHHHHHcCC
Q psy3301 541 EVFVKLATMAAFP 553 (608)
Q Consensus 541 e~F~~l~~~a~~p 553 (608)
|.|.+.++.++..
T Consensus 161 EaFl~c~~tIl~k 173 (214)
T KOG0086|consen 161 EAFLKCARTILNK 173 (214)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988765
No 112
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.86 E-value=3.6e-21 Score=178.34 Aligned_cols=142 Identities=29% Similarity=0.410 Sum_probs=116.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEe--cCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEE
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITI--PPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVY 88 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~ 88 (608)
+||+++|++|||||||+++|++..+.....++...... ...+....+.+.+||++|++.+......+++.+|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999999887654443322221 2223455678999999999999888888999999999999
Q ss_pred EcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHHHH
Q psy3301 89 SVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYYAQ 151 (608)
Q Consensus 89 d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~l~ 151 (608)
|++++++++.+. .|++.+... ...++|+++|+||+|+..... +++||+++.|++++|+++.
T Consensus 81 d~~~~~s~~~~~-~~~~~i~~~-~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~ 158 (162)
T cd04123 81 DITDADSFQKVK-KWIKELKQM-RGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLA 158 (162)
T ss_pred ECCCHHHHHHHH-HHHHHHHHh-CCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999999999988 788888753 334789999999999975432 8999999999999999998
Q ss_pred HHH
Q psy3301 152 KAV 154 (608)
Q Consensus 152 ~~i 154 (608)
+.+
T Consensus 159 ~~~ 161 (162)
T cd04123 159 KRM 161 (162)
T ss_pred HHh
Confidence 865
No 113
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.86 E-value=1.3e-20 Score=183.69 Aligned_cols=176 Identities=18% Similarity=0.234 Sum_probs=138.4
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEe--cCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCc
Q psy3301 6 SLRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITI--PPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHV 83 (608)
Q Consensus 6 ~~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 83 (608)
.....+||+++|++|||||||+++++.+.+...+.++...... ....+...+.+.+|||+|++++......+++.+++
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~ 84 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC 84 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence 3455799999999999999999999988887666555433222 22235567899999999999998888889999999
Q ss_pred EEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC---------------cccCcccCcCHHHHHH
Q psy3301 84 ICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST---------------VESSAKTLKNISEMFY 148 (608)
Q Consensus 84 iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~---------------~e~SAk~~~~i~~lf~ 148 (608)
+++|||+++..+|..+. .|+..+.. ...++|+++|+||+|+..... +++||++|.|++++|.
T Consensus 85 ~i~v~d~~~~~s~~~~~-~~~~~i~~--~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~ 161 (215)
T PTZ00132 85 AIIMFDVTSRITYKNVP-NWHRDIVR--VCENIPIVLVGNKVDVKDRQVKARQITFHRKKNLQYYDISAKSNYNFEKPFL 161 (215)
T ss_pred EEEEEECcCHHHHHHHH-HHHHHHHH--hCCCCCEEEEEECccCccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999998 79888874 346799999999999864322 7999999999999999
Q ss_pred HHHHHHhCCCCC-ccc-----cccccChHHHHHHHHHHHHhc
Q psy3301 149 YAQKAVLHPMAP-IYI-----SDKQELTPECIKALTRIFKVC 184 (608)
Q Consensus 149 ~l~~~i~~~~~~-l~~-----~~~~~l~~~~~~~L~~~f~~~ 184 (608)
++++.+.....- +.+ .....+.+...+.+.+.+..+
T Consensus 162 ~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~ 203 (215)
T PTZ00132 162 WLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAA 203 (215)
T ss_pred HHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHH
Confidence 999988654322 222 223567788777777766543
No 114
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.86 E-value=4.4e-21 Score=180.38 Aligned_cols=141 Identities=18% Similarity=0.151 Sum_probs=110.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLV 87 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV 87 (608)
...+||+++|++|||||||++++.+..+.. +.++....... +...++.+.+|||+|++.+...+..+++.+|++++|
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~-~~~t~g~~~~~--~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDIDT-ISPTLGFQIKT--LEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWV 88 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceEE--EEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence 456899999999999999999999886543 33332211111 222368899999999999888889999999999999
Q ss_pred EEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC--------------------cccCcccCcCHHHHH
Q psy3301 88 YSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST--------------------VESSAKTLKNISEMF 147 (608)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------------------~e~SAk~~~~i~~lf 147 (608)
||++++.+|+... .|+..+.......++|+++|+||+|+..... ++|||++|.|++++|
T Consensus 89 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 167 (173)
T cd04154 89 VDSSDRLRLDDCK-RELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGI 167 (173)
T ss_pred EECCCHHHHHHHH-HHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHH
Confidence 9999999999887 5555543222346899999999999864321 899999999999999
Q ss_pred HHHHH
Q psy3301 148 YYAQK 152 (608)
Q Consensus 148 ~~l~~ 152 (608)
+++..
T Consensus 168 ~~l~~ 172 (173)
T cd04154 168 DWLVD 172 (173)
T ss_pred HHHhc
Confidence 98764
No 115
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.86 E-value=6.7e-21 Score=176.96 Aligned_cols=144 Identities=26% Similarity=0.344 Sum_probs=118.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCc-ceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEE
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPELVPSKAE-EITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYS 89 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d 89 (608)
+||+++|++|||||||+++++...+...+.++.. .......++...+.+.+|||+|++.+......+++.+|++++|||
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 5899999999999999999999988766555432 222333445567889999999999999999999999999999999
Q ss_pred cCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCC--C---------------cccCcccCcCHHHHHHHHHH
Q psy3301 90 VVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYS--T---------------VESSAKTLKNISEMFYYAQK 152 (608)
Q Consensus 90 ~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~--~---------------~e~SAk~~~~i~~lf~~l~~ 152 (608)
++++.+|+.+. .|...+.......++|+++|+||+|+.... . +++||++|.|++++|+.+.+
T Consensus 81 ~~~~~s~~~~~-~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 81 ITDMESFTATA-EFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred CCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 99999999998 455555532335689999999999997622 1 89999999999999999987
Q ss_pred HHh
Q psy3301 153 AVL 155 (608)
Q Consensus 153 ~i~ 155 (608)
.+.
T Consensus 160 ~~~ 162 (164)
T cd04139 160 EIR 162 (164)
T ss_pred HHH
Confidence 664
No 116
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.86 E-value=5.5e-21 Score=178.77 Aligned_cols=145 Identities=23% Similarity=0.333 Sum_probs=118.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEe--cCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITI--PPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVIC 85 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 85 (608)
...+||+++|++|||||||++++..+.+.....++...... ...+.+..+.+.+||++|++.+......+++.+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 44689999999999999999999988876654443322211 2234455578899999999999888899999999999
Q ss_pred EEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHH
Q psy3301 86 LVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFY 148 (608)
Q Consensus 86 lV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~ 148 (608)
+|||++++.+++.+. .|++.+.. ....++|+++|+||+|+..... ++|||++|.|+.++|+
T Consensus 85 ~v~d~~~~~s~~~~~-~~~~~l~~-~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 162 (169)
T cd04114 85 LTYDITCEESFRCLP-EWLREIEQ-YANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFL 162 (169)
T ss_pred EEEECcCHHHHHHHH-HHHHHHHH-hCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHH
Confidence 999999999999988 79888875 2445789999999999974432 7999999999999999
Q ss_pred HHHHHH
Q psy3301 149 YAQKAV 154 (608)
Q Consensus 149 ~l~~~i 154 (608)
.+.+.+
T Consensus 163 ~i~~~~ 168 (169)
T cd04114 163 DLACRL 168 (169)
T ss_pred HHHHHh
Confidence 998764
No 117
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.86 E-value=5.3e-21 Score=179.33 Aligned_cols=145 Identities=26% Similarity=0.339 Sum_probs=117.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceE--ecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEE
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEIT--IPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVY 88 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~ 88 (608)
+||+++|++|||||||++++.+..+.....++..... ....+....+.+.+||++|++.+...+..+++++|++|+||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999988765544433222 22234455678899999999999888899999999999999
Q ss_pred EcCChhhHHHHHHhHHHHHhhhc---cCCCCcEEEEEeCcCCCCCCC------------------cccCcccCcCHHHHH
Q psy3301 89 SVVDDASIDRLSSHWLPFLRNCL---VDTCLPIVLVGNKVDLVDYST------------------VESSAKTLKNISEMF 147 (608)
Q Consensus 89 d~~~~~s~~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~~------------------~e~SAk~~~~i~~lf 147 (608)
|++++++++.+. .|.+.+.... ...++|+++|+||+|+..... +++||++|.|++++|
T Consensus 81 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 159 (172)
T cd01862 81 DVTNPKSFESLD-SWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAF 159 (172)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHH
Confidence 999999999987 7877665321 134799999999999973221 899999999999999
Q ss_pred HHHHHHHhC
Q psy3301 148 YYAQKAVLH 156 (608)
Q Consensus 148 ~~l~~~i~~ 156 (608)
+++.+.+..
T Consensus 160 ~~i~~~~~~ 168 (172)
T cd01862 160 ETIARKALE 168 (172)
T ss_pred HHHHHHHHh
Confidence 999988764
No 118
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.86 E-value=2.7e-21 Score=181.07 Aligned_cols=140 Identities=27% Similarity=0.434 Sum_probs=116.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCC-cceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEE
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPELVPSKA-EEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYS 89 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d 89 (608)
+||+++|++|||||||+++|++..+.....++. .............+.+.+||++|++.+.......++.+|++++|||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 699999999999999999999999854433332 2233333445667889999999999887777788899999999999
Q ss_pred cCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCC-------------C----------------cccCcccC
Q psy3301 90 VVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYS-------------T----------------VESSAKTL 140 (608)
Q Consensus 90 ~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-------------~----------------~e~SAk~~ 140 (608)
++++.+|......|+..+.. ...++|+++|+||+|+.... . +++||++|
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~--~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRH--YCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ 158 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHh--hCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence 99999999988889988874 44589999999999986543 0 89999999
Q ss_pred cCHHHHHHHHHH
Q psy3301 141 KNISEMFYYAQK 152 (608)
Q Consensus 141 ~~i~~lf~~l~~ 152 (608)
.|++++|+.+++
T Consensus 159 ~gi~~l~~~i~~ 170 (171)
T cd00157 159 EGVKEVFEEAIR 170 (171)
T ss_pred CCHHHHHHHHhh
Confidence 999999999875
No 119
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.86 E-value=4.4e-21 Score=182.70 Aligned_cols=144 Identities=27% Similarity=0.348 Sum_probs=117.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcce-EecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEE
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEI-TIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYS 89 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d 89 (608)
.||+|+|++|||||||++++..+.+.+.+.++.... .....+....+.+.+||++|++.+.......++.+|++++|||
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~ 81 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFA 81 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEE
Confidence 589999999999999999999888876544443222 2223345556778999999998887666677899999999999
Q ss_pred cCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCC----------C-----------------C-cccCcccCc
Q psy3301 90 VVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDY----------S-----------------T-VESSAKTLK 141 (608)
Q Consensus 90 ~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~----------~-----------------~-~e~SAk~~~ 141 (608)
+++.++|+.+...|++.+.. ...++|+++||||+|+... . . ++|||++|.
T Consensus 82 i~~~~s~~~~~~~~~~~i~~--~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 159 (187)
T cd04129 82 VDTPDSLENVRTKWIEEVRR--YCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE 159 (187)
T ss_pred CCCHHHHHHHHHHHHHHHHH--hCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence 99999999998789999984 3457999999999998541 0 0 899999999
Q ss_pred CHHHHHHHHHHHHhC
Q psy3301 142 NISEMFYYAQKAVLH 156 (608)
Q Consensus 142 ~i~~lf~~l~~~i~~ 156 (608)
||+++|+.+++.++.
T Consensus 160 ~v~~~f~~l~~~~~~ 174 (187)
T cd04129 160 GVDDVFEAATRAALL 174 (187)
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999988753
No 120
>PF08355 EF_assoc_1: EF hand associated; InterPro: IPR013566 This region typically appears on the C terminus of EF hands in GTP-binding proteins such as Arht/Rhot (may be involved in mitochondrial homeostasis and apoptosis[]). The EF hand associated region is found in yeast, vertebrates and plants.
Probab=99.86 E-value=4.8e-22 Score=154.84 Aligned_cols=75 Identities=52% Similarity=0.977 Sum_probs=71.2
Q ss_pred CCCccccccceecCCCCccchhhHHhHhhhhhccCHHHHHHHHHhcCCC-CCCCCCCceeeEecchhhhhhhcccC
Q psy3301 331 PWTDREMRAMVATNSKGWITMQGFLCYWILTTLFNVNKTLEYLAYFGYP-ITDRENQTSGVLVTREKQVDLLKKQT 405 (608)
Q Consensus 331 ~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~~~~~~~~~~~~~l~y~g~~-~~~~~~~~~a~~vtr~~~~~~~~~~~ 405 (608)
||...++...+.+|++|+||+++|+++|+|+|++||+.|+|||+||||+ ..+++++++||+|||+||.+++++++
T Consensus 1 PW~~~~~~~~~~~n~~G~iTl~gfLa~W~l~T~ld~~~tle~L~YLGy~~~~~~~~~~~Ai~VTr~R~~d~~k~~t 76 (76)
T PF08355_consen 1 PWIEPDFPDSVVTNEKGWITLQGFLAQWSLTTLLDPKRTLEYLAYLGYPGLSEQDSQTSAITVTRPRRLDRKKGQT 76 (76)
T ss_pred CCCCCCCcceeEEcCCCcCcHHHHHHHHHHHHHhCHHHHHHHHhhcCCCCccCCCCchhheEEcCchhhhhhccCC
Confidence 6878899999999999999999999999999999999999999999999 47889999999999999999999875
No 121
>KOG0395|consensus
Probab=99.85 E-value=4.4e-21 Score=182.14 Aligned_cols=150 Identities=26% Similarity=0.341 Sum_probs=130.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCc-ceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEE
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAE-EITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLV 87 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV 87 (608)
..+||+++|.+|||||+|+.++++..|...+.|+.+ ....+..++.+.+.+.|+||+|++++......+++.+|++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 468999999999999999999999999999777764 4566667778889999999999999999999999999999999
Q ss_pred EEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHHH
Q psy3301 88 YSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYYA 150 (608)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~l 150 (608)
|+++++.||+.+.. +...|........+|+++||||+|+...+. +|+||+.+.||+++|+.+
T Consensus 82 ysitd~~SF~~~~~-l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L 160 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQ-LREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL 160 (196)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence 99999999999994 555554334556789999999999987433 899999999999999999
Q ss_pred HHHHhCCCC
Q psy3301 151 QKAVLHPMA 159 (608)
Q Consensus 151 ~~~i~~~~~ 159 (608)
.+.+..+..
T Consensus 161 ~r~~~~~~~ 169 (196)
T KOG0395|consen 161 VREIRLPRE 169 (196)
T ss_pred HHHHHhhhc
Confidence 999876443
No 122
>KOG0097|consensus
Probab=99.85 E-value=2.8e-21 Score=163.80 Aligned_cols=146 Identities=26% Similarity=0.349 Sum_probs=125.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCC--cceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEE
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKA--EEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICL 86 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iil 86 (608)
-.+|.+|+|+-|||||+|+..+...+|....|-+. +-.+--.++++.++++.||||+|+++|+...+.+++.|.+.++
T Consensus 10 yifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalm 89 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 89 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeE
Confidence 35799999999999999999999999877655433 1122223567888999999999999999999999999999999
Q ss_pred EEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHH
Q psy3301 87 VYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYY 149 (608)
Q Consensus 87 V~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~ 149 (608)
|||++.+.++.++. .|+...+. .-.++..|+++|||.||...+. +|+|||+|.|+++.|-.
T Consensus 90 vyditrrstynhls-swl~dar~-ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafle 167 (215)
T KOG0097|consen 90 VYDITRRSTYNHLS-SWLTDARN-LTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLE 167 (215)
T ss_pred EEEehhhhhhhhHH-HHHhhhhc-cCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHH
Confidence 99999999999998 89988776 4667888999999999987665 89999999999999988
Q ss_pred HHHHHhC
Q psy3301 150 AQKAVLH 156 (608)
Q Consensus 150 l~~~i~~ 156 (608)
..+.+..
T Consensus 168 ~akkiyq 174 (215)
T KOG0097|consen 168 TAKKIYQ 174 (215)
T ss_pred HHHHHHH
Confidence 8887754
No 123
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.85 E-value=7e-21 Score=176.65 Aligned_cols=138 Identities=22% Similarity=0.200 Sum_probs=109.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCC-CCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEc
Q psy3301 12 RILLLGDRHVGKTSLILSLVSEEF-PELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSV 90 (608)
Q Consensus 12 kI~lvG~~~vGKTSLi~~l~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~ 90 (608)
+|+++|++|||||||+++|.+..+ ...+.++..... ..+...++.+.+|||||++++...+..+++.+|++++|||+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~--~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~ 78 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNV--ESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDS 78 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccce--EEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeC
Confidence 589999999999999999999763 434444432211 11334578899999999999999999999999999999999
Q ss_pred CChhhHHHHHHhHHHHHhhhc--cCCCCcEEEEEeCcCCCCCCC--------------------cccCcccCcCHHHHHH
Q psy3301 91 VDDASIDRLSSHWLPFLRNCL--VDTCLPIVLVGNKVDLVDYST--------------------VESSAKTLKNISEMFY 148 (608)
Q Consensus 91 ~~~~s~~~~~~~~~~~i~~~~--~~~~~piilv~nK~Dl~~~~~--------------------~e~SAk~~~~i~~lf~ 148 (608)
+++.++..+. .|+..+.... ...++|+++|+||+|+..... ++|||++|.|++++|.
T Consensus 79 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~ 157 (162)
T cd04157 79 SDRLRLVVVK-DELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQ 157 (162)
T ss_pred CcHHHHHHHH-HHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHH
Confidence 9999998877 5666554311 235799999999999865321 6899999999999999
Q ss_pred HHHH
Q psy3301 149 YAQK 152 (608)
Q Consensus 149 ~l~~ 152 (608)
++.+
T Consensus 158 ~l~~ 161 (162)
T cd04157 158 WLQA 161 (162)
T ss_pred HHhc
Confidence 9864
No 124
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.85 E-value=1.1e-20 Score=181.70 Aligned_cols=143 Identities=28% Similarity=0.331 Sum_probs=117.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcc-eEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEc
Q psy3301 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEE-ITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSV 90 (608)
Q Consensus 12 kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~ 90 (608)
||+++|++|||||||+++++++.+...+.++... ......+....+.+++||++|+..+......+++.+|++++|||+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 6899999999999999999999987765555422 222233344457899999999999988888899999999999999
Q ss_pred CChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCC-CC------------------cccCcccCcCHHHHHHHHH
Q psy3301 91 VDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDY-ST------------------VESSAKTLKNISEMFYYAQ 151 (608)
Q Consensus 91 ~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~-~~------------------~e~SAk~~~~i~~lf~~l~ 151 (608)
+++.+++.+. .|+..+.......++|++||+||+|+... .. +++||++|.|++++|+++.
T Consensus 81 ~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 81 DDPESFEEVE-RLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 9999999998 78776665334467999999999999652 21 7899999999999999999
Q ss_pred HHHh
Q psy3301 152 KAVL 155 (608)
Q Consensus 152 ~~i~ 155 (608)
+.+.
T Consensus 160 ~~~~ 163 (198)
T cd04147 160 RQAN 163 (198)
T ss_pred HHhh
Confidence 8775
No 125
>KOG0079|consensus
Probab=99.85 E-value=7.5e-23 Score=174.87 Aligned_cols=144 Identities=17% Similarity=0.199 Sum_probs=123.2
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecceEe-------CCcceeEeeeeccccc-----
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINTTTV-------YGQEKYLVLKEILVRD----- 474 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~~~v-------~Gqe~~~~l~~~~~~~----- 474 (608)
.+.||.+|||++|||||||+.+|..+.|+..|..|+|.++--.++.|++-.| +|||+|+.+...||++
T Consensus 6 dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~ 85 (198)
T KOG0079|consen 6 DHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVI 85 (198)
T ss_pred HHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEE
Confidence 4678999999999999999999999999999987776622224444444333 8999999999999998
Q ss_pred -ccccCCCCcc--ccccccc-----CCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHH
Q psy3301 475 -EQLPVLLPVD--VDCDKYF-----STSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFV 544 (608)
Q Consensus 475 -v~d~~l~~~~--~~~~~~~-----~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~ 544 (608)
||| +++.+ .+|.+|+ .++.+|-||||||.|+++.+.+..++++.||..+|+. .|++| .+.|+++.|.
T Consensus 86 vVYD--VTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie-~FETSaKe~~NvE~mF~ 162 (198)
T KOG0079|consen 86 VVYD--VTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIE-LFETSAKENENVEAMFH 162 (198)
T ss_pred EEEE--CcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceeeehHHHHHHHHhcCch-heehhhhhcccchHHHH
Confidence 899 99987 7777664 3679999999999999999999999999999999998 99999 8999999999
Q ss_pred HHHHHHcCC
Q psy3301 545 KLATMAAFP 553 (608)
Q Consensus 545 ~l~~~a~~p 553 (608)
-|+++.+..
T Consensus 163 cit~qvl~~ 171 (198)
T KOG0079|consen 163 CITKQVLQA 171 (198)
T ss_pred HHHHHHHHH
Confidence 999877554
No 126
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.85 E-value=9.8e-21 Score=175.15 Aligned_cols=137 Identities=18% Similarity=0.150 Sum_probs=108.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEcC
Q psy3301 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSVV 91 (608)
Q Consensus 12 kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~ 91 (608)
||+++|++|||||||++++..+.+....+ +...... .++..++.+++|||+|++.+...+..+++.+|++++|+|++
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~-t~~~~~~--~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~ 77 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIP-TIGFNVE--TVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDST 77 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCC-ccCcCeE--EEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECC
Confidence 68999999999999999998887765332 2211111 23345688999999999999888899999999999999999
Q ss_pred ChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC--------------------cccCcccCcCHHHHHHHHH
Q psy3301 92 DDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST--------------------VESSAKTLKNISEMFYYAQ 151 (608)
Q Consensus 92 ~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------------------~e~SAk~~~~i~~lf~~l~ 151 (608)
++.++......|...+.. ....++|+++|+||+|+..... ++|||++|.|++++|+++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~-~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 156 (158)
T cd04151 78 DRDRLGTAKEELHAMLEE-EELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLV 156 (158)
T ss_pred CHHHHHHHHHHHHHHHhc-hhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHh
Confidence 998888777556555553 2335789999999999864321 8999999999999999986
Q ss_pred H
Q psy3301 152 K 152 (608)
Q Consensus 152 ~ 152 (608)
+
T Consensus 157 ~ 157 (158)
T cd04151 157 N 157 (158)
T ss_pred c
Confidence 5
No 127
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.85 E-value=1.4e-20 Score=177.10 Aligned_cols=140 Identities=13% Similarity=0.144 Sum_probs=111.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEE
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVY 88 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~ 88 (608)
+.+||+++|++|||||||++++..+.+... .++...... .+....+.+.+||++|++.+...+..+++.+|++++||
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~-~~t~~~~~~--~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~ 90 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVHT-SPTIGSNVE--EIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVI 90 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCc-CCccccceE--EEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEE
Confidence 468999999999999999999999887753 333222221 23345688999999999999888899999999999999
Q ss_pred EcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC--------------------cccCcccCcCHHHHHH
Q psy3301 89 SVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST--------------------VESSAKTLKNISEMFY 148 (608)
Q Consensus 89 d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------------------~e~SAk~~~~i~~lf~ 148 (608)
|+++++++......|...+.. ....++|+++|+||+|+..... ++|||++|.||+++|+
T Consensus 91 D~s~~~~~~~~~~~l~~~~~~-~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~ 169 (174)
T cd04153 91 DSTDRERLPLTKEELYKMLAH-EDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLD 169 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHhc-hhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHHH
Confidence 999999998887555555442 2335789999999999864311 6899999999999999
Q ss_pred HHHH
Q psy3301 149 YAQK 152 (608)
Q Consensus 149 ~l~~ 152 (608)
++.+
T Consensus 170 ~l~~ 173 (174)
T cd04153 170 WIAS 173 (174)
T ss_pred HHhc
Confidence 9864
No 128
>KOG0091|consensus
Probab=99.85 E-value=8.3e-22 Score=171.44 Aligned_cols=145 Identities=18% Similarity=0.173 Sum_probs=121.9
Q ss_pred CCceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCce------Ee--cceEeCCcceeEeeeeccccc---
Q psy3301 406 TRNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPY------TI--NTTTVYGQEKYLVLKEILVRD--- 474 (608)
Q Consensus 406 ~r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~------~i--~~~~v~Gqe~~~~l~~~~~~~--- 474 (608)
..+.|+++|||++-|||||||+.|..+.|..-.+||.++++|..-+ .| .--+.+|||+|+.++..||++
T Consensus 5 f~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvg 84 (213)
T KOG0091|consen 5 FHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVG 84 (213)
T ss_pred eEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccc
Confidence 3467999999999999999999999999999999999986654322 22 223449999999999999999
Q ss_pred ---ccccCCCCcc--cccccc-------cC-CCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCH
Q psy3301 475 ---EQLPVLLPVD--VDCDKY-------FS-TSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANND 539 (608)
Q Consensus 475 ---v~d~~l~~~~--~~~~~~-------~~-~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v 539 (608)
+|| +++.. +++..| .. ..++-..|||+|+||..+|||+.+++++||+.+|+. ++++| ++.||
T Consensus 85 vllvyd--itnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~-FVETSak~g~NV 161 (213)
T KOG0091|consen 85 VLLVYD--ITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMA-FVETSAKNGCNV 161 (213)
T ss_pred eEEEEe--ccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCce-EEEecccCCCcH
Confidence 899 99877 555422 22 345667899999999999999999999999999998 99999 89999
Q ss_pred HHHHHHHHHHHcCC
Q psy3301 540 REVFVKLATMAAFP 553 (608)
Q Consensus 540 ~e~F~~l~~~a~~p 553 (608)
+|.|..|++.+...
T Consensus 162 eEAF~mlaqeIf~~ 175 (213)
T KOG0091|consen 162 EEAFDMLAQEIFQA 175 (213)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987554
No 129
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.84 E-value=1.7e-20 Score=175.33 Aligned_cols=137 Identities=20% Similarity=0.182 Sum_probs=110.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEcC
Q psy3301 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSVV 91 (608)
Q Consensus 12 kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~ 91 (608)
+|+++|++|||||||++++.+. +...+.++...... .+...++.+.+||++|++.+...+..+++.+|++++|||++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~--~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s 77 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPT--KLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSS 77 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceEE--EEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECC
Confidence 4899999999999999999977 55445554433222 33446788999999999999999999999999999999999
Q ss_pred ChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------------cccCcccC------cC
Q psy3301 92 DDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------------VESSAKTL------KN 142 (608)
Q Consensus 92 ~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------------~e~SAk~~------~~ 142 (608)
++.+++.+. .|+..+.......++|++||+||+|+..... ++|||++| .|
T Consensus 78 ~~~s~~~~~-~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g 156 (167)
T cd04161 78 DDDRVQEVK-EILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPS 156 (167)
T ss_pred chhHHHHHH-HHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccC
Confidence 999999988 5666665322335789999999999876442 56999998 89
Q ss_pred HHHHHHHHHH
Q psy3301 143 ISEMFYYAQK 152 (608)
Q Consensus 143 i~~lf~~l~~ 152 (608)
+.+.|+|+..
T Consensus 157 ~~~~~~wl~~ 166 (167)
T cd04161 157 IVEGLRWLLA 166 (167)
T ss_pred HHHHHHHHhc
Confidence 9999999864
No 130
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.84 E-value=2.3e-20 Score=172.95 Aligned_cols=138 Identities=21% Similarity=0.216 Sum_probs=107.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEcC
Q psy3301 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSVV 91 (608)
Q Consensus 12 kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~ 91 (608)
||+++|++|||||||++++.+..+....+. ......... ....+.+.+|||+|++.+...+..+++.+|++++|+|++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t-~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~ 78 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPT-VGFNVEMLQ-LEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSS 78 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCc-cCcceEEEE-eCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECC
Confidence 689999999999999999999988654332 221111111 134578999999999998888888999999999999999
Q ss_pred ChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC---------------------cccCcccCcCHHHHHHHH
Q psy3301 92 DDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST---------------------VESSAKTLKNISEMFYYA 150 (608)
Q Consensus 92 ~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~---------------------~e~SAk~~~~i~~lf~~l 150 (608)
++.++..+. .|+..+.......+.|+++|+||+|+..... ++|||++|.||+++|+++
T Consensus 79 ~~~~~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i 157 (160)
T cd04156 79 DEARLDESQ-KELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKL 157 (160)
T ss_pred cHHHHHHHH-HHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHH
Confidence 999999887 4544443212335799999999999854211 679999999999999988
Q ss_pred HH
Q psy3301 151 QK 152 (608)
Q Consensus 151 ~~ 152 (608)
.+
T Consensus 158 ~~ 159 (160)
T cd04156 158 AS 159 (160)
T ss_pred hc
Confidence 64
No 131
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.84 E-value=3.8e-20 Score=175.11 Aligned_cols=146 Identities=29% Similarity=0.303 Sum_probs=118.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCc-ceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEE
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPELVPSKAE-EITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYS 89 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d 89 (608)
.||+|+|++|||||||++++.+..+...+.++.. ..+....+....+.+.+|||+|++++......++..+|++++|||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 6899999999999999999999988765555442 223333344456778999999999998888899999999999999
Q ss_pred cCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHHHHH
Q psy3301 90 VVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYYAQK 152 (608)
Q Consensus 90 ~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~l~~ 152 (608)
+++..+++.+...|...++. ....+.|+|+|+||+|+..... +++||+++.|+.++|+++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~-~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 82 VTSRKSFEVVKVIYDKILDM-LGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE 160 (180)
T ss_pred CCCHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999998555554442 3446789999999999874321 89999999999999999998
Q ss_pred HHhCC
Q psy3301 153 AVLHP 157 (608)
Q Consensus 153 ~i~~~ 157 (608)
.+...
T Consensus 161 ~~~~~ 165 (180)
T cd04137 161 EIEKV 165 (180)
T ss_pred HHHHh
Confidence 88543
No 132
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.84 E-value=1.4e-20 Score=176.12 Aligned_cols=147 Identities=28% Similarity=0.485 Sum_probs=113.7
Q ss_pred CCceEEEEEEccCCCchHHHHHHHhcCCCC-CCCCCCCCCCcCCCceEecce-------EeCCcceeEeeeeccccc---
Q psy3301 406 TRNVYVCHVIGNRSTGKTALCQSILRKHHD-SSKTSITSPVECDPPYTINTT-------TVYGQEKYLVLKEILVRD--- 474 (608)
Q Consensus 406 ~r~~~k~~viG~~gvGKTsll~~f~~~~~~-~~~~~t~~~~~~~~~~~i~~~-------~v~Gqe~~~~l~~~~~~~--- 474 (608)
+|+++||+++|++|||||||++||+++.|. ..|.+|.+.+.....+.+++. +++|+++|..++..++++
T Consensus 1 ~~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~ 80 (169)
T cd01892 1 QRNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDV 80 (169)
T ss_pred CCeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCE
Confidence 489999999999999999999999999998 788777755111122333331 237888888887777666
Q ss_pred ---ccccCCCCcc--cccccc---c-CCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHH
Q psy3301 475 ---EQLPVLLPVD--VDCDKY---F-STSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVF 543 (608)
Q Consensus 475 ---v~d~~l~~~~--~~~~~~---~-~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F 543 (608)
+|| +++.+ +.+..+ . ...++|+++||||+||.+.+++...+++++++.+++..++++| ++.|++++|
T Consensus 81 ~llv~d--~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf 158 (169)
T cd01892 81 ACLVYD--SSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELF 158 (169)
T ss_pred EEEEEe--CCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHH
Confidence 788 66654 233211 1 2357999999999999876766667889999999987679999 899999999
Q ss_pred HHHHHHHcCCC
Q psy3301 544 VKLATMAAFPR 554 (608)
Q Consensus 544 ~~l~~~a~~p~ 554 (608)
..|++.++.||
T Consensus 159 ~~l~~~~~~~~ 169 (169)
T cd01892 159 TKLATAAQYPH 169 (169)
T ss_pred HHHHHHhhCCC
Confidence 99999999887
No 133
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.84 E-value=3.5e-20 Score=171.33 Aligned_cols=142 Identities=27% Similarity=0.369 Sum_probs=115.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcc-eEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEc
Q psy3301 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEE-ITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSV 90 (608)
Q Consensus 12 kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~ 90 (608)
||+++|++|||||||++++++..+...+.++... ......+....+.+++||++|++.+.......++.+|++++|||+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 6999999999999999999998877765555432 222233344468899999999999988899999999999999999
Q ss_pred CChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHHHHHH
Q psy3301 91 VDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYYAQKA 153 (608)
Q Consensus 91 ~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~l~~~ 153 (608)
+++++++.+. .|...+.........|+++|+||+|+..... +++||+++.|++++|+++.+.
T Consensus 81 ~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 81 TDRESFEEIK-GYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred CCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 9999999998 4555554322335899999999999986332 899999999999999999875
Q ss_pred H
Q psy3301 154 V 154 (608)
Q Consensus 154 i 154 (608)
+
T Consensus 160 i 160 (160)
T cd00876 160 I 160 (160)
T ss_pred C
Confidence 3
No 134
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.84 E-value=5.3e-21 Score=179.60 Aligned_cols=141 Identities=17% Similarity=0.236 Sum_probs=115.5
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecce-------EeCCcceeEeeeeccccc------cc
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINTT-------TVYGQEKYLVLKEILVRD------EQ 476 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~~-------~v~Gqe~~~~l~~~~~~~------v~ 476 (608)
+||+++|++|||||||+.+|+.+.|...|.+|++. .|...+.+++. +.+|+++|..+++.++++ ||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~-~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFD-NFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCccee-eeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 79999999999999999999999999889888865 33333444443 339999999999999987 89
Q ss_pred ccCCCCcc--ccc-cccc-----CCCCCcEEEEEeCCCCCcch----------hcccccHHHHHHHcCCCCceEEc--cC
Q psy3301 477 LPVLLPVD--VDC-DKYF-----STSKIPVMLVAGKSDMPRAR----------QDYLMQPDIFCETHKLSPAHSFS--AA 536 (608)
Q Consensus 477 d~~l~~~~--~~~-~~~~-----~~~~~p~ilVgnK~DL~~~~----------~~~~~~~~~~~~~~~~~~~~~~S--~~ 536 (608)
| +++.+ +.+ ..|. ..+++|++|||||+||.+++ .++.+++.++|+++++.+++++| ++
T Consensus 81 d--~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~ 158 (176)
T cd04133 81 S--LISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQ 158 (176)
T ss_pred E--cCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcc
Confidence 9 88777 333 2221 13689999999999997654 47788999999999986689999 89
Q ss_pred CCHHHHHHHHHHHHcCC
Q psy3301 537 NNDREVFVKLATMAAFP 553 (608)
Q Consensus 537 ~~v~e~F~~l~~~a~~p 553 (608)
.||+++|..+++++..|
T Consensus 159 ~nV~~~F~~~~~~~~~~ 175 (176)
T cd04133 159 QNVKAVFDAAIKVVLQP 175 (176)
T ss_pred cCHHHHHHHHHHHHhcC
Confidence 99999999999998776
No 135
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.83 E-value=8.3e-21 Score=180.31 Aligned_cols=144 Identities=15% Similarity=0.158 Sum_probs=118.2
Q ss_pred ceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecc-------eEeCCcceeEeeeeccccc------
Q psy3301 408 NVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINT-------TTVYGQEKYLVLKEILVRD------ 474 (608)
Q Consensus 408 ~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~-------~~v~Gqe~~~~l~~~~~~~------ 474 (608)
..+||+|+|+.|||||||+++|.++.|...+.++++.+.....+.+++ .+++|+++|..+++.++++
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill 84 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL 84 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence 569999999999999999999999999888877766622223344444 3449999999999988887
Q ss_pred ccccCCCCcc--ccccccc-----CCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHHH
Q psy3301 475 EQLPVLLPVD--VDCDKYF-----STSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFVK 545 (608)
Q Consensus 475 v~d~~l~~~~--~~~~~~~-----~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~~ 545 (608)
||| +++.. +.+..|. ..+++|+||||||+||.+.++++.++++++|++++++ ++++| ++.||+++|..
T Consensus 85 VfD--~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~-~~e~SAk~g~~V~~~F~~ 161 (189)
T cd04121 85 VYD--ITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMT-FFEVSPLCNFNITESFTE 161 (189)
T ss_pred EEE--CcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCE-EEEecCCCCCCHHHHHHH
Confidence 899 88776 4444221 1368999999999999988889899999999999986 99999 89999999999
Q ss_pred HHHHHcCCC
Q psy3301 546 LATMAAFPR 554 (608)
Q Consensus 546 l~~~a~~p~ 554 (608)
|++.+...+
T Consensus 162 l~~~i~~~~ 170 (189)
T cd04121 162 LARIVLMRH 170 (189)
T ss_pred HHHHHHHhc
Confidence 999998776
No 136
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.83 E-value=7.2e-21 Score=179.81 Aligned_cols=142 Identities=16% Similarity=0.133 Sum_probs=115.2
Q ss_pred ceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecce-------EeCCcceeEeeeeccccc------
Q psy3301 408 NVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINTT-------TVYGQEKYLVLKEILVRD------ 474 (608)
Q Consensus 408 ~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~~-------~v~Gqe~~~~l~~~~~~~------ 474 (608)
..+||+++|++|||||||++||+.+.|...|.||++. .|...+.+++. +++||++|..+++.++++
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~-~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il 82 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFE-NYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 82 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceee-eeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence 3589999999999999999999999999999888765 44444444443 339999999999998887
Q ss_pred ccccCCCCcc--ccc-cccc-----CCCCCcEEEEEeCCCCCc------------chhcccccHHHHHHHcCCCCceEEc
Q psy3301 475 EQLPVLLPVD--VDC-DKYF-----STSKIPVMLVAGKSDMPR------------ARQDYLMQPDIFCETHKLSPAHSFS 534 (608)
Q Consensus 475 v~d~~l~~~~--~~~-~~~~-----~~~~~p~ilVgnK~DL~~------------~~~~~~~~~~~~~~~~~~~~~~~~S 534 (608)
||| +++.+ +++ ..|. ..+++|++|||||+||.+ .++++.++++++|+++++.+++++|
T Consensus 83 vyD--it~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S 160 (182)
T cd04172 83 CFD--ISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 160 (182)
T ss_pred EEE--CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence 899 88876 444 3331 136899999999999974 3468889999999999975599999
Q ss_pred --cCCC-HHHHHHHHHHHHcC
Q psy3301 535 --AANN-DREVFVKLATMAAF 552 (608)
Q Consensus 535 --~~~~-v~e~F~~l~~~a~~ 552 (608)
++.| |+++|..+++.+++
T Consensus 161 Ak~~~n~v~~~F~~~~~~~~~ 181 (182)
T cd04172 161 ALQSENSVRDIFHVATLACVN 181 (182)
T ss_pred cCCCCCCHHHHHHHHHHHHhc
Confidence 8998 99999999997654
No 137
>KOG0093|consensus
Probab=99.83 E-value=4.4e-21 Score=163.96 Aligned_cols=145 Identities=19% Similarity=0.177 Sum_probs=120.6
Q ss_pred CCCceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCC-CceEe-------cceEeCCcceeEeeeeccccc--
Q psy3301 405 TTRNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECD-PPYTI-------NTTTVYGQEKYLVLKEILVRD-- 474 (608)
Q Consensus 405 ~~r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~-~~~~i-------~~~~v~Gqe~~~~l~~~~~~~-- 474 (608)
.-.+.||+.|+|++.||||||+.||++.+|...+-.|.|+ .|. .++.- .-.+.+|||+|+.++-.|+|+
T Consensus 17 nFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGi-dFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgam 95 (193)
T KOG0093|consen 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGI-DFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAM 95 (193)
T ss_pred cccceeeEEEEccCCccchhhhHHhhccccccceeeeeee-eEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccc
Confidence 4467899999999999999999999999999998888877 233 22211 112229999999999999998
Q ss_pred ----ccccCCCCcc--cccc------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHH
Q psy3301 475 ----EQLPVLLPVD--VDCD------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDR 540 (608)
Q Consensus 475 ----v~d~~l~~~~--~~~~------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~ 540 (608)
+|| +++.+ .... +.+.-.++|+|+||||||++++|.++.+.+..+++++|+. +|++| .+.||+
T Consensus 96 gfiLmyD--itNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfe-fFEtSaK~NinVk 172 (193)
T KOG0093|consen 96 GFILMYD--ITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFE-FFETSAKENINVK 172 (193)
T ss_pred eEEEEEe--cCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChH-HhhhcccccccHH
Confidence 899 88876 2222 4556789999999999999999999999999999999998 99999 799999
Q ss_pred HHHHHHHHHHcCC
Q psy3301 541 EVFVKLATMAAFP 553 (608)
Q Consensus 541 e~F~~l~~~a~~p 553 (608)
++|.+++..+-..
T Consensus 173 ~~Fe~lv~~Ic~k 185 (193)
T KOG0093|consen 173 QVFERLVDIICDK 185 (193)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999877443
No 138
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.83 E-value=8.2e-20 Score=173.45 Aligned_cols=142 Identities=15% Similarity=0.206 Sum_probs=111.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLV 87 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV 87 (608)
++.+||+++|.+|||||||++++.++.+.. +.++...... .+...++.+.+||++|++.+...+..+++.+|++++|
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~~~--~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~v 91 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTSE--ELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYL 91 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccceE--EEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence 557999999999999999999999987754 3333222111 2233568899999999999888899999999999999
Q ss_pred EEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC---------------------------cccCcccC
Q psy3301 88 YSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST---------------------------VESSAKTL 140 (608)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~---------------------------~e~SAk~~ 140 (608)
+|+++++++......+...+.. ....++|+++|+||+|+..... ++|||++|
T Consensus 92 vD~~~~~~~~~~~~~l~~l~~~-~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~ 170 (184)
T smart00178 92 VDAYDKERFAESKRELDALLSD-EELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRR 170 (184)
T ss_pred EECCcHHHHHHHHHHHHHHHcC-hhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeecccC
Confidence 9999999998887444443332 2335789999999999863211 78999999
Q ss_pred cCHHHHHHHHHHH
Q psy3301 141 KNISEMFYYAQKA 153 (608)
Q Consensus 141 ~~i~~lf~~l~~~ 153 (608)
.|++++++++.+.
T Consensus 171 ~g~~~~~~wl~~~ 183 (184)
T smart00178 171 MGYGEGFKWLSQY 183 (184)
T ss_pred CChHHHHHHHHhh
Confidence 9999999999764
No 139
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.83 E-value=1.1e-19 Score=168.09 Aligned_cols=137 Identities=22% Similarity=0.155 Sum_probs=108.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEcC
Q psy3301 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSVV 91 (608)
Q Consensus 12 kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~ 91 (608)
||+++|++|||||||++++++..+... .++...... .+....+.+.+||+||++.+...+..+++.+|++++|||++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~-~~t~~~~~~--~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~ 77 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTT-IPTIGFNVE--TVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSS 77 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCcCcceE--EEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECC
Confidence 689999999999999999999985432 222221111 12334688999999999999888999999999999999999
Q ss_pred ChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC--------------------cccCcccCcCHHHHHHHHH
Q psy3301 92 DDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST--------------------VESSAKTLKNISEMFYYAQ 151 (608)
Q Consensus 92 ~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------------------~e~SAk~~~~i~~lf~~l~ 151 (608)
+++++..... |+..+.......+.|+++|+||+|+..... +++||++|.|++++|.++.
T Consensus 78 ~~~~~~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~ 156 (158)
T cd00878 78 DRERIEEAKE-ELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLL 156 (158)
T ss_pred CHHHHHHHHH-HHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHh
Confidence 9999999874 444443223356889999999999975331 8899999999999999886
Q ss_pred H
Q psy3301 152 K 152 (608)
Q Consensus 152 ~ 152 (608)
.
T Consensus 157 ~ 157 (158)
T cd00878 157 Q 157 (158)
T ss_pred h
Confidence 4
No 140
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.83 E-value=4.7e-20 Score=176.46 Aligned_cols=119 Identities=18% Similarity=0.203 Sum_probs=97.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEe--cCcc-----CCCceeEEEEeCCCCCCChHHHHHHHHhcCc
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITI--PPDV-----TPEMVPTHIVDYSEVDQTVDELTEEIQKAHV 83 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i--~~~~-----~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 83 (608)
+||+++|++|||||||+++++++.|...+.++...... ...+ ....+.+.||||+|++++......+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 69999999999999999999999998776665432111 1112 2356889999999999999999999999999
Q ss_pred EEEEEEcCChhhHHHHHHhHHHHHhhhc------------------cCCCCcEEEEEeCcCCCCC
Q psy3301 84 ICLVYSVVDDASIDRLSSHWLPFLRNCL------------------VDTCLPIVLVGNKVDLVDY 130 (608)
Q Consensus 84 iilV~d~~~~~s~~~~~~~~~~~i~~~~------------------~~~~~piilv~nK~Dl~~~ 130 (608)
+|+|||+++++||+++. .|+..+.... ...++|++|||||+|+...
T Consensus 81 iIlVyDvtn~~Sf~~l~-~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 81 IILVHDLTNRKSSQNLQ-RWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred EEEEEECcChHHHHHHH-HHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence 99999999999999998 8999886421 2357899999999998654
No 141
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.83 E-value=9.5e-20 Score=173.99 Aligned_cols=143 Identities=17% Similarity=0.223 Sum_probs=111.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEE
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICL 86 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iil 86 (608)
..+..||+++|++|||||||++++.++.+.. +.++..... ..+...++++.+||++|++.+...+..+++.+|++++
T Consensus 16 ~~~~~ki~ilG~~~~GKStLi~~l~~~~~~~-~~~T~~~~~--~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iil 92 (190)
T cd00879 16 YNKEAKILFLGLDNAGKTTLLHMLKDDRLAQ-HVPTLHPTS--EELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVF 92 (190)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccCcce--EEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 3567999999999999999999999988754 333322221 1233346889999999999888888889999999999
Q ss_pred EEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCC----------------------------C---ccc
Q psy3301 87 VYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYS----------------------------T---VES 135 (608)
Q Consensus 87 V~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~----------------------------~---~e~ 135 (608)
|+|+++..+++... .|+..+.......+.|+++|+||+|+.... . ++|
T Consensus 93 V~D~~~~~s~~~~~-~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (190)
T cd00879 93 LVDAADPERFQESK-EELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMC 171 (190)
T ss_pred EEECCcHHHHHHHH-HHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEe
Confidence 99999999998877 444444322334679999999999986310 0 889
Q ss_pred CcccCcCHHHHHHHHHHH
Q psy3301 136 SAKTLKNISEMFYYAQKA 153 (608)
Q Consensus 136 SAk~~~~i~~lf~~l~~~ 153 (608)
||++|.|++++|+++.+.
T Consensus 172 Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 172 SVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred EecCCCChHHHHHHHHhh
Confidence 999999999999999764
No 142
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.83 E-value=8.3e-20 Score=168.03 Aligned_cols=139 Identities=33% Similarity=0.457 Sum_probs=114.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceE--ecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEE
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEIT--IPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVY 88 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~ 88 (608)
+||+++|++|||||||++++.+..+.....++..... ...........+.+||+||++.+.......++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999998876444433222 22233445688999999999998888899999999999999
Q ss_pred EcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHHHH
Q psy3301 89 SVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYYAQ 151 (608)
Q Consensus 89 d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~l~ 151 (608)
|++++++++.+. .|+..+... .....|+++|+||+|+..... +++||+++.|++++|.++.
T Consensus 81 d~~~~~~~~~~~-~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 81 DITNRESFENLD-KWLKELKEY-APENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred ECCCHHHHHHHH-HHHHHHHHh-CCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 999999999998 699888752 336799999999999962221 9999999999999999875
No 143
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.82 E-value=8.1e-20 Score=170.50 Aligned_cols=138 Identities=16% Similarity=0.131 Sum_probs=105.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCC------CcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEE
Q psy3301 12 RILLLGDRHVGKTSLILSLVSEEFP------ELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVIC 85 (608)
Q Consensus 12 kI~lvG~~~vGKTSLi~~l~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 85 (608)
+|+++|++|||||||+++|.+.... ..+.++..... ..+...+..+.+|||||++.+...+..+++.+|+++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v 78 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAII 78 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence 5899999999999999999875332 11122111111 122334688999999999999888899999999999
Q ss_pred EEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC----------------------cccCcccCcCH
Q psy3301 86 LVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST----------------------VESSAKTLKNI 143 (608)
Q Consensus 86 lV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------------------~e~SAk~~~~i 143 (608)
+|+|++++++++... .|+..+.......++|+++|+||+|+..... +++||++|.|+
T Consensus 79 ~vvd~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv 157 (167)
T cd04160 79 YVIDSTDRERFEESK-SALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGV 157 (167)
T ss_pred EEEECchHHHHHHHH-HHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCH
Confidence 999999999998887 4544443222346799999999999865421 89999999999
Q ss_pred HHHHHHHHH
Q psy3301 144 SEMFYYAQK 152 (608)
Q Consensus 144 ~~lf~~l~~ 152 (608)
+++++++..
T Consensus 158 ~e~~~~l~~ 166 (167)
T cd04160 158 REGIEWLVE 166 (167)
T ss_pred HHHHHHHhc
Confidence 999999864
No 144
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.82 E-value=1.1e-20 Score=178.05 Aligned_cols=139 Identities=16% Similarity=0.122 Sum_probs=111.8
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecc-------eEeCCcceeEeeeeccccc------cc
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINT-------TTVYGQEKYLVLKEILVRD------EQ 476 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~-------~~v~Gqe~~~~l~~~~~~~------v~ 476 (608)
+|++++|++|||||||+++|+++.|...|.+|++. .|...+.+++ .+++||++|..+++.++++ ||
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFE-NYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEE-EEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 69999999999999999999999999888877765 3333333433 3339999999999998887 89
Q ss_pred ccCCCCcc--ccc-cccc-----CCCCCcEEEEEeCCCCCc------------chhcccccHHHHHHHcCCCCceEEc--
Q psy3301 477 LPVLLPVD--VDC-DKYF-----STSKIPVMLVAGKSDMPR------------ARQDYLMQPDIFCETHKLSPAHSFS-- 534 (608)
Q Consensus 477 d~~l~~~~--~~~-~~~~-----~~~~~p~ilVgnK~DL~~------------~~~~~~~~~~~~~~~~~~~~~~~~S-- 534 (608)
| +++.+ +.+ ..|. ..+++|++|||||+||.+ +++++.+++.++|+++++.+++++|
T Consensus 81 d--it~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 81 D--ISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred E--CCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 9 88776 443 3332 146899999999999964 3458889999999999986689999
Q ss_pred cCCC-HHHHHHHHHHHHc
Q psy3301 535 AANN-DREVFVKLATMAA 551 (608)
Q Consensus 535 ~~~~-v~e~F~~l~~~a~ 551 (608)
++.| |+++|..+++.++
T Consensus 159 ~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 159 TSEKSVRDIFHVATMACL 176 (178)
T ss_pred cCCcCHHHHHHHHHHHHh
Confidence 7885 9999999999765
No 145
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.82 E-value=1.2e-20 Score=184.07 Aligned_cols=142 Identities=11% Similarity=0.078 Sum_probs=114.8
Q ss_pred eEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecce-------EeCCcceeEeeeeccccc------c
Q psy3301 409 VYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINTT-------TVYGQEKYLVLKEILVRD------E 475 (608)
Q Consensus 409 ~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~~-------~v~Gqe~~~~l~~~~~~~------v 475 (608)
.+||+|+|++|||||||+++|+++.|...|.||++. .|...+.+++. +++||++|..+++.++++ |
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~-~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlV 91 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFE-NYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLC 91 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceee-eeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEE
Confidence 489999999999999999999999999999888766 34333334332 339999999999998888 8
Q ss_pred cccCCCCcc--ccc-cccc-----CCCCCcEEEEEeCCCCCc------------chhcccccHHHHHHHcCCCCceEEc-
Q psy3301 476 QLPVLLPVD--VDC-DKYF-----STSKIPVMLVAGKSDMPR------------ARQDYLMQPDIFCETHKLSPAHSFS- 534 (608)
Q Consensus 476 ~d~~l~~~~--~~~-~~~~-----~~~~~p~ilVgnK~DL~~------------~~~~~~~~~~~~~~~~~~~~~~~~S- 534 (608)
|| +++.+ +.+ ..|. ..+++|+||||||+||.+ .++++.++++++|+++++.+++++|
T Consensus 92 yD--it~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSA 169 (232)
T cd04174 92 FD--ISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSA 169 (232)
T ss_pred EE--CCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccC
Confidence 99 88877 332 2221 136899999999999974 3678889999999999996689999
Q ss_pred -cCC-CHHHHHHHHHHHHcCC
Q psy3301 535 -AAN-NDREVFVKLATMAAFP 553 (608)
Q Consensus 535 -~~~-~v~e~F~~l~~~a~~p 553 (608)
++. ||+++|..++..++.-
T Consensus 170 ktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 170 FTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred CcCCcCHHHHHHHHHHHHHHh
Confidence 786 8999999999988654
No 146
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.82 E-value=1.8e-20 Score=179.09 Aligned_cols=142 Identities=17% Similarity=0.206 Sum_probs=115.3
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecc-------eEeCCcceeEeeeeccccc------cc
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINT-------TTVYGQEKYLVLKEILVRD------EQ 476 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~-------~~v~Gqe~~~~l~~~~~~~------v~ 476 (608)
+||+++|++|||||||+.||+.+.|...|.+|++. .|...+.+++ .+++||++|..+++.++++ ||
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvy 82 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFD-NYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICF 82 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEe-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEE
Confidence 89999999999999999999999999888888765 3333333433 3449999999999999887 79
Q ss_pred ccCCCCcc--cccc-ccc-----CCCCCcEEEEEeCCCCCcch------------hcccccHHHHHHHcCCCCceEEc--
Q psy3301 477 LPVLLPVD--VDCD-KYF-----STSKIPVMLVAGKSDMPRAR------------QDYLMQPDIFCETHKLSPAHSFS-- 534 (608)
Q Consensus 477 d~~l~~~~--~~~~-~~~-----~~~~~p~ilVgnK~DL~~~~------------~~~~~~~~~~~~~~~~~~~~~~S-- 534 (608)
| +++.+ +.+. .|. ..+++|++|||||+||.+.+ .++.+++.++|++++..+++++|
T Consensus 83 d--it~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk 160 (191)
T cd01875 83 S--IASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL 160 (191)
T ss_pred E--CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence 9 88876 4442 221 13689999999999997543 35667899999999965599999
Q ss_pred cCCCHHHHHHHHHHHHcCCC
Q psy3301 535 AANNDREVFVKLATMAAFPR 554 (608)
Q Consensus 535 ~~~~v~e~F~~l~~~a~~p~ 554 (608)
++.||+++|..|++.++.|.
T Consensus 161 ~g~~v~e~f~~l~~~~~~~~ 180 (191)
T cd01875 161 NQDGVKEVFAEAVRAVLNPT 180 (191)
T ss_pred CCCCHHHHHHHHHHHHhccc
Confidence 89999999999999999885
No 147
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.82 E-value=4.5e-20 Score=165.06 Aligned_cols=147 Identities=23% Similarity=0.276 Sum_probs=132.9
Q ss_pred ccccChHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHH
Q psy3301 165 DKQELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLH 244 (608)
Q Consensus 165 ~~~~l~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~ 244 (608)
...++++++++.++++|..+|.|++|.|+..||..+++. +|..++++++.+++..++.. .+.|+|++|+.++
T Consensus 10 ~~~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~-lg~~~s~~ei~~l~~~~d~~-------~~~idf~~Fl~~m 81 (160)
T COG5126 10 TFTQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRS-LGFNPSEAEINKLFEEIDAG-------NETVDFPEFLTVM 81 (160)
T ss_pred hcccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHH-cCCCCcHHHHHHHHHhccCC-------CCccCHHHHHHHH
Confidence 345788999999999999999999999999999999995 89999999999999998652 6899999999999
Q ss_pred HHHHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhcc
Q psy3301 245 NLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSL 324 (608)
Q Consensus 245 ~~~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~ 324 (608)
.....++.. .++|+++|+.||+|+||+|+..||+.+++.
T Consensus 82 s~~~~~~~~-----------------------------------------~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~ 120 (160)
T COG5126 82 SVKLKRGDK-----------------------------------------EEELREAFKLFDKDHDGYISIGELRRVLKS 120 (160)
T ss_pred HHHhccCCc-----------------------------------------HHHHHHHHHHhCCCCCceecHHHHHHHHHh
Confidence 877665433 478999999999999999999999999999
Q ss_pred CCCCCCCCCccccccceecCCCCccchhhHHhHhhh
Q psy3301 325 CPPECPPWTDREMRAMVATNSKGWITMQGFLCYWIL 360 (608)
Q Consensus 325 ~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~ 360 (608)
.|+.....+++.+++.++.|++|.|+|++|.+.|.-
T Consensus 121 lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 121 LGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred hcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 998788888999999999999999999999998863
No 148
>KOG0081|consensus
Probab=99.82 E-value=4.7e-21 Score=165.82 Aligned_cols=146 Identities=23% Similarity=0.283 Sum_probs=120.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCC------cceEecC---ccC--CCceeEEEEeCCCCCCChHHHHHHH
Q psy3301 10 NVRILLLGDRHVGKTSLILSLVSEEFPELVPSKA------EEITIPP---DVT--PEMVPTHIVDYSEVDQTVDELTEEI 78 (608)
Q Consensus 10 ~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~------~~~~i~~---~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~ 78 (608)
-||.+.+|++||||||++.++..++|....-.+. .+..... ... ...+.+++|||+|+|+|+.+...++
T Consensus 9 likfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFf 88 (219)
T KOG0081|consen 9 LIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFF 88 (219)
T ss_pred HHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHH
Confidence 4688999999999999999999999886522211 1111111 111 1346789999999999999999999
Q ss_pred HhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCc
Q psy3301 79 QKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLK 141 (608)
Q Consensus 79 ~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~ 141 (608)
++|-+++++||+++.+||-+++ .|+..++......+.-||++|||+||.+.+. +|+||-+|.
T Consensus 89 RDAMGFlLiFDlT~eqSFLnvr-nWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~ 167 (219)
T KOG0081|consen 89 RDAMGFLLIFDLTSEQSFLNVR-NWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGT 167 (219)
T ss_pred HhhccceEEEeccchHHHHHHH-HHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCc
Confidence 9999999999999999999999 8999988766777878999999999987765 999999999
Q ss_pred CHHHHHHHHHHHHhC
Q psy3301 142 NISEMFYYAQKAVLH 156 (608)
Q Consensus 142 ~i~~lf~~l~~~i~~ 156 (608)
||++..+.+...+..
T Consensus 168 Nv~kave~LldlvM~ 182 (219)
T KOG0081|consen 168 NVEKAVELLLDLVMK 182 (219)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999988888777754
No 149
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.82 E-value=2.3e-19 Score=165.18 Aligned_cols=137 Identities=20% Similarity=0.215 Sum_probs=110.5
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEcCC
Q psy3301 13 ILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSVVD 92 (608)
Q Consensus 13 I~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~~ 92 (608)
|+++|++|||||||+++|.+.++...+.++....... +....+.+.+||++|++.+...+..+++.+|++++|+|+++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~ 79 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAAD 79 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCC
Confidence 7999999999999999999998887655544332222 22345889999999999999889999999999999999999
Q ss_pred hhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC--------------------cccCcccCcCHHHHHHHHHH
Q psy3301 93 DASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST--------------------VESSAKTLKNISEMFYYAQK 152 (608)
Q Consensus 93 ~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------------------~e~SAk~~~~i~~lf~~l~~ 152 (608)
..++......|...+.. ....++|+++|+||+|+..... +++||++|.|++++++++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~-~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 80 RTALEAAKNELHDLLEK-PSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred HHHHHHHHHHHHHHHcC-hhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 99998887444444332 2346789999999999875432 78999999999999999865
No 150
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.81 E-value=2.8e-20 Score=178.43 Aligned_cols=140 Identities=19% Similarity=0.167 Sum_probs=114.9
Q ss_pred EEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecc-------eEeCCcceeEeeeeccccc------ccc
Q psy3301 411 VCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINT-------TTVYGQEKYLVLKEILVRD------EQL 477 (608)
Q Consensus 411 k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~-------~~v~Gqe~~~~l~~~~~~~------v~d 477 (608)
+++|+|++|||||||++||+.+.|...|.+|++.+.+...+.+++ .+++||++|..+++.++++ |||
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfD 81 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYD 81 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEE
Confidence 689999999999999999999999998888887633334455544 2339999999999999987 899
Q ss_pred cCCCCcc--cccccc------cCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHc-CCCCceEEc--cCCCHHHHHHHH
Q psy3301 478 PVLLPVD--VDCDKY------FSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETH-KLSPAHSFS--AANNDREVFVKL 546 (608)
Q Consensus 478 ~~l~~~~--~~~~~~------~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~-~~~~~~~~S--~~~~v~e~F~~l 546 (608)
+++.+ +.+..| ....++|++|||||+||...+++...+++++|+++ ++. ++++| ++.||+++|.++
T Consensus 82 --vtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~-~~etSAktg~gV~e~F~~l 158 (202)
T cd04120 82 --ITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMR-FCEASAKDNFNVDEIFLKL 158 (202)
T ss_pred --CcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCE-EEEecCCCCCCHHHHHHHH
Confidence 88876 444322 23467999999999999888888889999999986 664 88999 899999999999
Q ss_pred HHHHcCC
Q psy3301 547 ATMAAFP 553 (608)
Q Consensus 547 ~~~a~~p 553 (608)
++.+...
T Consensus 159 ~~~~~~~ 165 (202)
T cd04120 159 VDDILKK 165 (202)
T ss_pred HHHHHHh
Confidence 9988654
No 151
>KOG0083|consensus
Probab=99.81 E-value=4.4e-21 Score=161.09 Aligned_cols=141 Identities=25% Similarity=0.330 Sum_probs=116.1
Q ss_pred EEEcCCCCCHHHHHHHHHcCCCCCc-CCCCCcce--EecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEc
Q psy3301 14 LLLGDRHVGKTSLILSLVSEEFPEL-VPSKAEEI--TIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSV 90 (608)
Q Consensus 14 ~lvG~~~vGKTSLi~~l~~~~~~~~-~~~~~~~~--~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~ 90 (608)
+++|++++|||+|+-|+-.+.|-.+ .-.+...+ ..-.+++...+++++|||+|+|+|+.....++++||+.+++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 3789999999999999887776543 11111111 11234566789999999999999999999999999999999999
Q ss_pred CChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHHHHHH
Q psy3301 91 VDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYYAQKA 153 (608)
Q Consensus 91 ~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~l~~~ 153 (608)
.+..||+++. .|+..|.++ ....+.+.++|||+|+..++. .|+|||+|.|++-.|-.+.+.
T Consensus 81 ankasfdn~~-~wlsei~ey-~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~ 158 (192)
T KOG0083|consen 81 ANKASFDNCQ-AWLSEIHEY-AKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEE 158 (192)
T ss_pred ccchhHHHHH-HHHHHHHHH-HHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHH
Confidence 9999999999 899999974 556778999999999976433 899999999999999999888
Q ss_pred HhC
Q psy3301 154 VLH 156 (608)
Q Consensus 154 i~~ 156 (608)
+..
T Consensus 159 l~k 161 (192)
T KOG0083|consen 159 LKK 161 (192)
T ss_pred HHH
Confidence 754
No 152
>KOG0097|consensus
Probab=99.81 E-value=1.9e-20 Score=158.78 Aligned_cols=144 Identities=15% Similarity=0.209 Sum_probs=122.2
Q ss_pred CCceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCc-eEecceEe-------CCcceeEeeeeccccc---
Q psy3301 406 TRNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPP-YTINTTTV-------YGQEKYLVLKEILVRD--- 474 (608)
Q Consensus 406 ~r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~-~~i~~~~v-------~Gqe~~~~l~~~~~~~--- 474 (608)
..++||-+|||+-|||||+|++.|..+.|..+.+.|+++ .|+.+ +.+.+-.+ +|||+|+...+.||++
T Consensus 8 ysyifkyiiigdmgvgkscllhqftekkfmadcphtigv-efgtriievsgqkiklqiwdtagqerfravtrsyyrgaag 86 (215)
T KOG0097|consen 8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGV-EFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 86 (215)
T ss_pred hhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccce-ecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 357899999999999999999999999999998888888 55543 33443322 8999999999999998
Q ss_pred ---ccccCCCCcc--cccc------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHH
Q psy3301 475 ---EQLPVLLPVD--VDCD------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDRE 541 (608)
Q Consensus 475 ---v~d~~l~~~~--~~~~------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e 541 (608)
||| ++.+. .+.. +....|+..++|+|||+||+.+|.+..+++.+|+++.|+. +++.| +|.||++
T Consensus 87 almvyd--itrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~-fle~saktg~nved 163 (215)
T KOG0097|consen 87 ALMVYD--ITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLM-FLEASAKTGQNVED 163 (215)
T ss_pred eeEEEE--ehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeE-EEEecccccCcHHH
Confidence 899 87766 2222 4445789999999999999999999999999999999997 89999 8999999
Q ss_pred HHHHHHHHHcCC
Q psy3301 542 VFVKLATMAAFP 553 (608)
Q Consensus 542 ~F~~l~~~a~~p 553 (608)
.|...+..+..-
T Consensus 164 afle~akkiyqn 175 (215)
T KOG0097|consen 164 AFLETAKKIYQN 175 (215)
T ss_pred HHHHHHHHHHHh
Confidence 999999887654
No 153
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.81 E-value=6e-20 Score=172.37 Aligned_cols=142 Identities=15% Similarity=0.167 Sum_probs=114.7
Q ss_pred eEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecc-------eEeCCcceeEeeeeccccc------c
Q psy3301 409 VYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINT-------TTVYGQEKYLVLKEILVRD------E 475 (608)
Q Consensus 409 ~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~-------~~v~Gqe~~~~l~~~~~~~------v 475 (608)
.+||+|+|++|||||||+++|+++.|...+.+|.+. .+...+.+++ .+.+|+++|..+++.++++ |
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIED-AYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccc-eEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 379999999999999999999999998888777764 3333344444 3348999999999888887 7
Q ss_pred cccCCCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHH
Q psy3301 476 QLPVLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFV 544 (608)
Q Consensus 476 ~d~~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~ 544 (608)
|| +++.+ ..+. +....+++|+++||||+||.+.+++..+++.++|++++++ ++++| ++.||+++|.
T Consensus 81 ~d--~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~-~~e~Sa~~~~~v~~~f~ 157 (172)
T cd04141 81 YS--VTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCP-FFETSAALRHYIDDAFH 157 (172)
T ss_pred EE--CCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCE-EEEEecCCCCCHHHHHH
Confidence 88 77766 3332 2223468999999999999888888888999999999985 88999 8999999999
Q ss_pred HHHHHHcCCC
Q psy3301 545 KLATMAAFPR 554 (608)
Q Consensus 545 ~l~~~a~~p~ 554 (608)
.|++.+....
T Consensus 158 ~l~~~~~~~~ 167 (172)
T cd04141 158 GLVREIRRKE 167 (172)
T ss_pred HHHHHHHHhc
Confidence 9999887654
No 154
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.80 E-value=6.7e-19 Score=165.33 Aligned_cols=141 Identities=19% Similarity=0.251 Sum_probs=110.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLV 87 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV 87 (608)
.+.+||+++|++|||||||++++.+..+.. +.++...... .+...+..+.+||++|+..+...+..+++.+|++++|
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~~~--~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 88 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFNIK--TVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYV 88 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcceE--EEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEE
Confidence 457999999999999999999999987654 2232221111 2223467899999999988888888889999999999
Q ss_pred EEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC--------------------cccCcccCcCHHHHH
Q psy3301 88 YSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST--------------------VESSAKTLKNISEMF 147 (608)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------------------~e~SAk~~~~i~~lf 147 (608)
+|+++..++......|...+.. ....++|+++++||+|+..... ++|||++|.|++++|
T Consensus 89 ~D~~~~~~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 167 (173)
T cd04155 89 IDSADKKRLEEAGAELVELLEE-EKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGM 167 (173)
T ss_pred EeCCCHHHHHHHHHHHHHHHhC-hhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHH
Confidence 9999999988877445454443 2345799999999999865432 589999999999999
Q ss_pred HHHHH
Q psy3301 148 YYAQK 152 (608)
Q Consensus 148 ~~l~~ 152 (608)
+++.+
T Consensus 168 ~~l~~ 172 (173)
T cd04155 168 NWVCK 172 (173)
T ss_pred HHHhc
Confidence 99875
No 155
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.80 E-value=5.6e-19 Score=189.41 Aligned_cols=188 Identities=21% Similarity=0.243 Sum_probs=131.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCC--CcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHH--------HHH
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFP--ELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDE--------LTE 76 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~ 76 (608)
.++.++|+++|.+|||||||+|+|++.... .+.+++ +...+...+...+.++.+|||+|...+... ...
T Consensus 212 ~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gt-T~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~ 290 (449)
T PRK05291 212 LREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGT-TRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSRE 290 (449)
T ss_pred hhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCc-ccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHH
Confidence 456799999999999999999999998753 223332 344444444556788999999998765432 234
Q ss_pred HHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC---------cccCcccCcCHHHHH
Q psy3301 77 EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST---------VESSAKTLKNISEMF 147 (608)
Q Consensus 77 ~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~---------~e~SAk~~~~i~~lf 147 (608)
+++.+|++++|||++++.+++... .|.. ..+.|+++|+||+|+..... +++||++|.|+++++
T Consensus 291 ~~~~aD~il~VvD~s~~~s~~~~~-~l~~-------~~~~piiiV~NK~DL~~~~~~~~~~~~~~i~iSAktg~GI~~L~ 362 (449)
T PRK05291 291 AIEEADLVLLVLDASEPLTEEDDE-ILEE-------LKDKPVIVVLNKADLTGEIDLEEENGKPVIRISAKTGEGIDELR 362 (449)
T ss_pred HHHhCCEEEEEecCCCCCChhHHH-HHHh-------cCCCCcEEEEEhhhccccchhhhccCCceEEEEeeCCCCHHHHH
Confidence 688999999999999998877654 3432 34689999999999975421 899999999999999
Q ss_pred HHHHHHHhCCC-----C-CccccccccChHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhc
Q psy3301 148 YYAQKAVLHPM-----A-PIYISDKQELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRR 203 (608)
Q Consensus 148 ~~l~~~i~~~~-----~-~l~~~~~~~l~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~ 203 (608)
+++.+.+.... . .+...+.......+.+.|.++......+.+-.+-..||+.....
T Consensus 363 ~~L~~~l~~~~~~~~~~~~~~~~R~~~~l~~a~~~l~~~~~~~~~~~~~~~~a~~l~~a~~~ 424 (449)
T PRK05291 363 EAIKELAFGGFGGNQEGVFLTNARHLEALERALEHLERALEGLESGLPLELLAEDLRLALEA 424 (449)
T ss_pred HHHHHHHhhccccccccceehHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 99998875311 1 11123344455566666666555544333345666666666553
No 156
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.80 E-value=1.2e-18 Score=179.08 Aligned_cols=209 Identities=20% Similarity=0.235 Sum_probs=157.8
Q ss_pred ccCCCccEEEEEcCCCCCHHHHHHHHHcCCCCCc-CCCCCcceEecCccCCCceeEEEEeCCCCCCChHHH--------H
Q psy3301 5 VSLRRNVRILLLGDRHVGKTSLILSLVSEEFPEL-VPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDEL--------T 75 (608)
Q Consensus 5 ~~~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~--------~ 75 (608)
...++.+|++++|.||||||||+|.|++.+.+.. .-+.++++.+...+...+++++|+||+|..+..+.. .
T Consensus 212 ~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~ 291 (454)
T COG0486 212 KILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAK 291 (454)
T ss_pred hhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHH
Confidence 4567899999999999999999999999987764 333458999999999999999999999987665553 4
Q ss_pred HHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC------------cccCcccCcCH
Q psy3301 76 EEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST------------VESSAKTLKNI 143 (608)
Q Consensus 76 ~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~------------~e~SAk~~~~i 143 (608)
..+.+||.+++|+|.+.+.+-+.....+ ....+.|+++|.||+||..... +.+||++|.|+
T Consensus 292 ~~i~~ADlvL~v~D~~~~~~~~d~~~~~-------~~~~~~~~i~v~NK~DL~~~~~~~~~~~~~~~~~i~iSa~t~~Gl 364 (454)
T COG0486 292 KAIEEADLVLFVLDASQPLDKEDLALIE-------LLPKKKPIIVVLNKADLVSKIELESEKLANGDAIISISAKTGEGL 364 (454)
T ss_pred HHHHhCCEEEEEEeCCCCCchhhHHHHH-------hcccCCCEEEEEechhcccccccchhhccCCCceEEEEecCccCH
Confidence 5689999999999999863333322122 1345789999999999987422 89999999999
Q ss_pred HHHHHHHHHHHhCC---CCCcc--ccccccChHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHH
Q psy3301 144 SEMFYYAQKAVLHP---MAPIY--ISDKQELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVK 218 (608)
Q Consensus 144 ~~lf~~l~~~i~~~---~~~l~--~~~~~~l~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~ 218 (608)
+.+.+.+.+.+... ....+ +.+...+..++...|.++....+...+..+-..||+..+.. +|.-..+...++++
T Consensus 365 ~~L~~~i~~~~~~~~~~~~~~~i~~~Rh~~~L~~a~~~l~~a~~~~~~~~~~dl~a~dLr~A~~~-LgeItG~~~~edlL 443 (454)
T COG0486 365 DALREAIKQLFGKGLGNQEGLFLSNLRHIQLLEQAAEHLEDALQQLELGQPLDLLAEDLRLAQEA-LGEITGEFVSEDLL 443 (454)
T ss_pred HHHHHHHHHHHhhcccccccceeecHHHHHHHHHHHHHHHHHHhhhhccCChhhhHHHHHHHHHH-HHHhhCCCchHHHH
Confidence 99999999888654 11222 34445567788888888888887655888999999888775 44333333344444
Q ss_pred HHH
Q psy3301 219 IVI 221 (608)
Q Consensus 219 ~~~ 221 (608)
..+
T Consensus 444 d~I 446 (454)
T COG0486 444 DEI 446 (454)
T ss_pred HHH
Confidence 444
No 157
>KOG0095|consensus
Probab=99.79 E-value=3.1e-20 Score=159.02 Aligned_cols=143 Identities=19% Similarity=0.236 Sum_probs=117.7
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecceEe-------CCcceeEeeeeccccc-----
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINTTTV-------YGQEKYLVLKEILVRD----- 474 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~~~v-------~Gqe~~~~l~~~~~~~----- 474 (608)
...||+++||..|||||+|++||..+-|++-...|+++++.-.++.+++..+ +|||+|+.++..|||.
T Consensus 5 kflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahali 84 (213)
T KOG0095|consen 5 KFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (213)
T ss_pred ceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEE
Confidence 4689999999999999999999999999999888887733335555555443 8999999999999998
Q ss_pred -ccccCCCCcc-cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHH
Q psy3301 475 -EQLPVLLPVD-VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVF 543 (608)
Q Consensus 475 -v~d~~l~~~~-~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F 543 (608)
+|| ++... -.|- +.+...++-.||||||.|+.+.|++..+.+++|++...+- ++++| ...||+.+|
T Consensus 85 lvyd--iscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmy-fletsakea~nve~lf 161 (213)
T KOG0095|consen 85 LVYD--ISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMY-FLETSAKEADNVEKLF 161 (213)
T ss_pred EEEe--cccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhh-hhhhcccchhhHHHHH
Confidence 788 66544 3343 3345678889999999999999999999999999998775 78888 789999999
Q ss_pred HHHHHHHcC
Q psy3301 544 VKLATMAAF 552 (608)
Q Consensus 544 ~~l~~~a~~ 552 (608)
..++.....
T Consensus 162 ~~~a~rli~ 170 (213)
T KOG0095|consen 162 LDLACRLIS 170 (213)
T ss_pred HHHHHHHHH
Confidence 999876543
No 158
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.79 E-value=1.3e-18 Score=162.46 Aligned_cols=139 Identities=14% Similarity=0.203 Sum_probs=98.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCc-CCCCCcceEecCccCCCceeEEEEeCCCCCCCh---------HHHHHHHHhc
Q psy3301 12 RILLLGDRHVGKTSLILSLVSEEFPEL-VPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTV---------DELTEEIQKA 81 (608)
Q Consensus 12 kI~lvG~~~vGKTSLi~~l~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~---------~~~~~~~~~a 81 (608)
+|+++|++|||||||+++|.+..+... ++.. +.......+...++.+.||||||+.... .........+
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFT-TKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR 80 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCc-ccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhcc
Confidence 799999999999999999999887532 2221 1111111233456889999999974211 0111112336
Q ss_pred CcEEEEEEcCChhhH--HHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC---------------cccCcccCcCHH
Q psy3301 82 HVICLVYSVVDDASI--DRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST---------------VESSAKTLKNIS 144 (608)
Q Consensus 82 d~iilV~d~~~~~s~--~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~---------------~e~SAk~~~~i~ 144 (608)
|++++|+|+++..++ +... .|+..+.. ...+.|+++|+||+|+..... ++|||++|.|++
T Consensus 81 d~~l~v~d~~~~~~~~~~~~~-~~~~~l~~--~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 157 (168)
T cd01897 81 AAVLFLFDPSETCGYSLEEQL-SLFEEIKP--LFKNKPVIVVLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLTEEGVD 157 (168)
T ss_pred CcEEEEEeCCcccccchHHHH-HHHHHHHh--hcCcCCeEEEEEccccCchhhHHHHHHhhhhccCceEEEEecccCCHH
Confidence 899999999987654 5544 67777763 234789999999999864322 899999999999
Q ss_pred HHHHHHHHHH
Q psy3301 145 EMFYYAQKAV 154 (608)
Q Consensus 145 ~lf~~l~~~i 154 (608)
++|+++.+.+
T Consensus 158 ~l~~~l~~~~ 167 (168)
T cd01897 158 EVKNKACELL 167 (168)
T ss_pred HHHHHHHHHh
Confidence 9999998765
No 159
>KOG0027|consensus
Probab=99.79 E-value=3.4e-19 Score=163.12 Aligned_cols=148 Identities=25% Similarity=0.319 Sum_probs=130.1
Q ss_pred ChHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHHH
Q psy3301 169 LTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFM 248 (608)
Q Consensus 169 l~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~~ 248 (608)
++......++++|..+|.|++|.++..||..+++. +|..+++.++..++..++.+ ++|.|++++|+.++....
T Consensus 2 ~~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~-lg~~~t~~el~~~~~~~D~d------g~g~I~~~eF~~l~~~~~ 74 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKDGDGKISVEELGAVLRS-LGQNPTEEELRDLIKEIDLD------GDGTIDFEEFLDLMEKLG 74 (151)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHH-cCCCCCHHHHHHHHHHhCCC------CCCeEcHHHHHHHHHhhh
Confidence 45677889999999999999999999999999998 89999999999999999999 899999999999887544
Q ss_pred hcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCCCC
Q psy3301 249 QRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPE 328 (608)
Q Consensus 249 ~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~~~ 328 (608)
....++ + ...+.++++|+.||+|+||+|+.+||+.++...|..
T Consensus 75 ~~~~~~----------------------------------~---~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~ 117 (151)
T KOG0027|consen 75 EEKTDE----------------------------------E---ASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEK 117 (151)
T ss_pred cccccc----------------------------------c---ccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCc
Confidence 332221 0 235689999999999999999999999999999976
Q ss_pred CCCCCccccccceecCCCCccchhhHHhHhhh
Q psy3301 329 CPPWTDREMRAMVATNSKGWITMQGFLCYWIL 360 (608)
Q Consensus 329 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~ 360 (608)
....+...+++.+|.|+||.|+|++|+.+|..
T Consensus 118 ~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 118 LTDEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred CCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 66777899999999999999999999998863
No 160
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.79 E-value=1.4e-18 Score=185.16 Aligned_cols=189 Identities=17% Similarity=0.170 Sum_probs=131.9
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHHcCCCC--CcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHH--------H
Q psy3301 6 SLRRNVRILLLGDRHVGKTSLILSLVSEEFP--ELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDEL--------T 75 (608)
Q Consensus 6 ~~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~--------~ 75 (608)
..++.+||+++|++|||||||+|+|++.... ..++++ ++..+...+...+.++.+|||||+..+...+ .
T Consensus 199 ~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgt-Trd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~ 277 (442)
T TIGR00450 199 KLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGT-TRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSF 277 (442)
T ss_pred HhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCc-EEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHH
Confidence 3456899999999999999999999997643 334433 4555555566667889999999987654332 4
Q ss_pred HHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------cccCcccCcCHH
Q psy3301 76 EEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------VESSAKTLKNIS 144 (608)
Q Consensus 76 ~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------~e~SAk~~~~i~ 144 (608)
.+++.+|++++|||++++.+++.. |+..+. ..++|+++|+||+|+..... +++||++ .||+
T Consensus 278 ~~~~~aD~il~V~D~s~~~s~~~~---~l~~~~----~~~~piIlV~NK~Dl~~~~~~~~~~~~~~~~~~vSak~-~gI~ 349 (442)
T TIGR00450 278 KAIKQADLVIYVLDASQPLTKDDF---LIIDLN----KSKKPFILVLNKIDLKINSLEFFVSSKVLNSSNLSAKQ-LKIK 349 (442)
T ss_pred HHHhhCCEEEEEEECCCCCChhHH---HHHHHh----hCCCCEEEEEECccCCCcchhhhhhhcCCceEEEEEec-CCHH
Confidence 578899999999999999887764 655544 24689999999999864311 6799998 5999
Q ss_pred HHHHHHHHHHhCCCC-------Ccc--ccccccChHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhc
Q psy3301 145 EMFYYAQKAVLHPMA-------PIY--ISDKQELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRR 203 (608)
Q Consensus 145 ~lf~~l~~~i~~~~~-------~l~--~~~~~~l~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~ 203 (608)
++|+.+.+.+..... ... +.+......++.+.|.++....+....-.+-..+|+..+..
T Consensus 350 ~~~~~L~~~i~~~~~~~~~~~~~~~~~~~r~~~~l~~a~~~l~~~~~~~~~~~~~el~a~~l~~a~~~ 417 (442)
T TIGR00450 350 ALVDLLTQKINAFYSKERVELDDYLISSWQAMILLEKAIAQLQQFLSKLDRQLFLDMLVFHLREAINC 417 (442)
T ss_pred HHHHHHHHHHHHHhcccccccccceEhHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 999998887744211 111 12333345555666666665554433445666777766554
No 161
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.79 E-value=1.3e-18 Score=164.27 Aligned_cols=137 Identities=17% Similarity=0.169 Sum_probs=103.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC-------CCCcCCCCC--------c--ceEecCcc---CCCceeEEEEeCCCCCCCh
Q psy3301 12 RILLLGDRHVGKTSLILSLVSEE-------FPELVPSKA--------E--EITIPPDV---TPEMVPTHIVDYSEVDQTV 71 (608)
Q Consensus 12 kI~lvG~~~vGKTSLi~~l~~~~-------~~~~~~~~~--------~--~~~i~~~~---~~~~~~~~i~Dt~G~~~~~ 71 (608)
+|+++|++|||||||+++|++.. +...+.++. + ...+...+ ....+.+++|||||++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 79999999999999999999743 111111110 0 00111112 4567889999999999999
Q ss_pred HHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC------------------c
Q psy3301 72 DELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST------------------V 133 (608)
Q Consensus 72 ~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~------------------~ 133 (608)
..+..+++.+|++++|||+++..+++... .|..... .++|+++|+||+|+..... +
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~-~~~~~~~-----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 155 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLA-NFYLALE-----NNLEIIPVINKIDLPSADPERVKQQIEDVLGLDPSEAI 155 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHH-HHHHHHH-----cCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCCcccEE
Confidence 99999999999999999999987776665 5544322 3689999999999864321 6
Q ss_pred ccCcccCcCHHHHHHHHHHHH
Q psy3301 134 ESSAKTLKNISEMFYYAQKAV 154 (608)
Q Consensus 134 e~SAk~~~~i~~lf~~l~~~i 154 (608)
++||++|.|++++|+++.+.+
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 156 LVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred EeeccCCCCHHHHHHHHHhhC
Confidence 899999999999999998875
No 162
>PLN00023 GTP-binding protein; Provisional
Probab=99.79 E-value=9.2e-19 Score=175.16 Aligned_cols=122 Identities=19% Similarity=0.203 Sum_probs=99.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceE--ecCccC-------------CCceeEEEEeCCCCCCChH
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEIT--IPPDVT-------------PEMVPTHIVDYSEVDQTVD 72 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~--i~~~~~-------------~~~~~~~i~Dt~G~~~~~~ 72 (608)
...+||+|+|+.|||||||+++|+++.|...+.++..... ....+. ...+.+.||||+|+++|..
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrs 98 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKD 98 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhh
Confidence 4569999999999999999999999998876655543221 111121 2457899999999999999
Q ss_pred HHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhcc-----------CCCCcEEEEEeCcCCCCC
Q psy3301 73 ELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLV-----------DTCLPIVLVGNKVDLVDY 130 (608)
Q Consensus 73 ~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~-----------~~~~piilv~nK~Dl~~~ 130 (608)
.+..+++++|++|+|||++++.+|+++. .|+..+..... ..++|++|||||+||...
T Consensus 99 L~~~yyr~AdgiILVyDITdr~SFenL~-kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 99 CRSLFYSQINGVIFVHDLSQRRTKTSLQ-KWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred hhHHhccCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 9999999999999999999999999998 89999885311 136899999999998653
No 163
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.79 E-value=3e-19 Score=168.05 Aligned_cols=139 Identities=19% Similarity=0.183 Sum_probs=110.1
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecc-------eEeCCcceeEeeeeccccc------cc
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINT-------TTVYGQEKYLVLKEILVRD------EQ 476 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~-------~~v~Gqe~~~~l~~~~~~~------v~ 476 (608)
+||+|+|++|||||||+++|+.+.|...|.||.+. .|...+.+++ .+.+|+++|..++..++++ ||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFD-NYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceee-eeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 79999999999999999999999998888877765 3333333333 3449999999999888876 78
Q ss_pred ccCCCCcc--cccc-ccc-----CCCCCcEEEEEeCCCCCcc------------hhcccccHHHHHHHcCCCCceEEc--
Q psy3301 477 LPVLLPVD--VDCD-KYF-----STSKIPVMLVAGKSDMPRA------------RQDYLMQPDIFCETHKLSPAHSFS-- 534 (608)
Q Consensus 477 d~~l~~~~--~~~~-~~~-----~~~~~p~ilVgnK~DL~~~------------~~~~~~~~~~~~~~~~~~~~~~~S-- 534 (608)
| +++.+ +.+. .|. ..+++|++|||||+||... ++++.+++.+++++.+..+++++|
T Consensus 81 d--~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~ 158 (175)
T cd01874 81 S--VVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL 158 (175)
T ss_pred E--CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence 8 77766 3332 121 2368999999999999653 567778899999999865599999
Q ss_pred cCCCHHHHHHHHHHHHc
Q psy3301 535 AANNDREVFVKLATMAA 551 (608)
Q Consensus 535 ~~~~v~e~F~~l~~~a~ 551 (608)
++.|++++|..++..|+
T Consensus 159 tg~~v~~~f~~~~~~~~ 175 (175)
T cd01874 159 TQKGLKNVFDEAILAAL 175 (175)
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 89999999999999763
No 164
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.79 E-value=6.3e-19 Score=165.78 Aligned_cols=143 Identities=22% Similarity=0.233 Sum_probs=117.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLV 87 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV 87 (608)
++.+||+++|..|+|||||++++..+.... +.|+...... .+...++.+.+||.+|+..++..+..+++.+|++|+|
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~~~--~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfV 88 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFNIE--EIKYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIFV 88 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEEEE--EEEETTEEEEEEEESSSGGGGGGGGGGHTTESEEEEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc-cCcccccccc--eeeeCcEEEEEEeccccccccccceeeccccceeEEE
Confidence 678999999999999999999999876554 2232222221 2344678899999999999999999999999999999
Q ss_pred EEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC---------------------cccCcccCcCHHHH
Q psy3301 88 YSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST---------------------VESSAKTLKNISEM 146 (608)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~---------------------~e~SAk~~~~i~~l 146 (608)
+|.++++.+......+...+.. ....++|++|++||+|+.+... +.|||++|.|+.+.
T Consensus 89 vDssd~~~l~e~~~~L~~ll~~-~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~ 167 (175)
T PF00025_consen 89 VDSSDPERLQEAKEELKELLND-PELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEG 167 (175)
T ss_dssp EETTGGGGHHHHHHHHHHHHTS-GGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHH
T ss_pred Eecccceeecccccchhhhcch-hhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHH
Confidence 9999999999888666666654 3446899999999999876433 77999999999999
Q ss_pred HHHHHHHH
Q psy3301 147 FYYAQKAV 154 (608)
Q Consensus 147 f~~l~~~i 154 (608)
++|+.+++
T Consensus 168 l~WL~~~~ 175 (175)
T PF00025_consen 168 LEWLIEQI 175 (175)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcC
Confidence 99998864
No 165
>KOG0081|consensus
Probab=99.78 E-value=7.1e-21 Score=164.71 Aligned_cols=145 Identities=15% Similarity=0.091 Sum_probs=122.2
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecceE----------------eCCcceeEeeeec
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINTTT----------------VYGQEKYLVLKEI 470 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~~~----------------v~Gqe~~~~l~~~ 470 (608)
.+.+|.+.+|++|||||||+.+|..+.|......|.++++-..++.+|.-- .+|||+|+.|+-.
T Consensus 7 dylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTA 86 (219)
T KOG0081|consen 7 DYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTA 86 (219)
T ss_pred HHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHH
Confidence 467899999999999999999999999999888888884444666555421 2899999999999
Q ss_pred cccc------ccccCCCCcccccc---------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc-
Q psy3301 471 LVRD------EQLPVLLPVDVDCD---------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS- 534 (608)
Q Consensus 471 ~~~~------v~d~~l~~~~~~~~---------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S- 534 (608)
.+++ .|| +++.+.... .+..+.+.-||++|||+||+++|+++..++.++|+++++| +|++|
T Consensus 87 FfRDAMGFlLiFD--lT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglP-YfETSA 163 (219)
T KOG0081|consen 87 FFRDAMGFLLIFD--LTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLP-YFETSA 163 (219)
T ss_pred HHHhhccceEEEe--ccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCC-eeeecc
Confidence 9998 789 888773332 2344678889999999999999999999999999999998 99999
Q ss_pred -cCCCHHHHHHHHHHHHcCCC
Q psy3301 535 -AANNDREVFVKLATMAAFPR 554 (608)
Q Consensus 535 -~~~~v~e~F~~l~~~a~~p~ 554 (608)
++.||++....|...++...
T Consensus 164 ~tg~Nv~kave~LldlvM~Ri 184 (219)
T KOG0081|consen 164 CTGTNVEKAVELLLDLVMKRI 184 (219)
T ss_pred ccCcCHHHHHHHHHHHHHHHH
Confidence 89999999988888776543
No 166
>KOG0088|consensus
Probab=99.78 E-value=8.2e-20 Score=158.04 Aligned_cols=144 Identities=17% Similarity=0.158 Sum_probs=118.0
Q ss_pred ceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecc-------eEeCCcceeEeeeeccccc------
Q psy3301 408 NVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINT-------TTVYGQEKYLVLKEILVRD------ 474 (608)
Q Consensus 408 ~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~-------~~v~Gqe~~~~l~~~~~~~------ 474 (608)
.-||+|++|..-||||||+.||+.+.|...+..|....+....+.+.+ .+.+|||+|..|-++||++
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalL 91 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALL 91 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceEE
Confidence 569999999999999999999999999888765554422223333332 3349999999999999998
Q ss_pred ccccCCCCcccccc--------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHH
Q psy3301 475 EQLPVLLPVDVDCD--------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFV 544 (608)
Q Consensus 475 v~d~~l~~~~~~~~--------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~ 544 (608)
||| +++++.+-+ +......+-+++||||.||+++|+++.++++.+|+.-|+. ++++| .+.+|.|+|.
T Consensus 92 VyD--ITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~-y~eTSAk~N~Gi~elFe 168 (218)
T KOG0088|consen 92 VYD--ITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGAL-YMETSAKDNVGISELFE 168 (218)
T ss_pred EEe--ccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchh-heecccccccCHHHHHH
Confidence 899 999884333 2233577889999999999999999999999999999997 99999 7999999999
Q ss_pred HHHHHHcCCC
Q psy3301 545 KLATMAAFPR 554 (608)
Q Consensus 545 ~l~~~a~~p~ 554 (608)
.|....+...
T Consensus 169 ~Lt~~MiE~~ 178 (218)
T KOG0088|consen 169 SLTAKMIEHS 178 (218)
T ss_pred HHHHHHHHHh
Confidence 9987665543
No 167
>KOG4252|consensus
Probab=99.78 E-value=1.6e-19 Score=159.61 Aligned_cols=147 Identities=22% Similarity=0.286 Sum_probs=126.6
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecC--ccCCCceeEEEEeCCCCCCChHHHHHHHHhcCc
Q psy3301 6 SLRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPP--DVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHV 83 (608)
Q Consensus 6 ~~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 83 (608)
.+..-+|++|+|..+|||||+|+|++.+-|...+..+....-... .+..+.+.+.+|||+|++++..+...++++|.+
T Consensus 16 d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa 95 (246)
T KOG4252|consen 16 DYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQA 95 (246)
T ss_pred hhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccc
Confidence 345679999999999999999999999998887666443222221 235566788899999999999999999999999
Q ss_pred EEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHH
Q psy3301 84 ICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEM 146 (608)
Q Consensus 84 iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~l 146 (608)
.++||+-+|+.||+.+. .|.+.+. .....+|.++|-||+|+.++.. +.+|++...|+.++
T Consensus 96 ~vLVFSTTDr~SFea~~-~w~~kv~--~e~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~v 172 (246)
T KOG4252|consen 96 SVLVFSTTDRYSFEATL-EWYNKVQ--KETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHV 172 (246)
T ss_pred eEEEEecccHHHHHHHH-HHHHHHH--HHhccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHH
Confidence 99999999999999998 8999998 6788999999999999988765 89999999999999
Q ss_pred HHHHHHHHh
Q psy3301 147 FYYAQKAVL 155 (608)
Q Consensus 147 f~~l~~~i~ 155 (608)
|.+++....
T Consensus 173 F~YLaeK~~ 181 (246)
T KOG4252|consen 173 FAYLAEKLT 181 (246)
T ss_pred HHHHHHHHH
Confidence 999887764
No 168
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.78 E-value=5e-19 Score=171.81 Aligned_cols=142 Identities=18% Similarity=0.123 Sum_probs=113.7
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecc-------eEeCCcceeEeeeeccccc------cc
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINT-------TTVYGQEKYLVLKEILVRD------EQ 476 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~-------~~v~Gqe~~~~l~~~~~~~------v~ 476 (608)
+||+|||++|||||||+++|+++.|...|.||++. .|...+.+++ .+++|++.|..+++.++++ ||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~-~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFE-NYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccc-ceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 69999999999999999999999999999888765 3433344443 3349999999999988887 89
Q ss_pred ccCCCCcc--ccc-cccc-----CCCCCcEEEEEeCCCCCcc------------hhcccccHHHHHHHcCCCCceEEc--
Q psy3301 477 LPVLLPVD--VDC-DKYF-----STSKIPVMLVAGKSDMPRA------------RQDYLMQPDIFCETHKLSPAHSFS-- 534 (608)
Q Consensus 477 d~~l~~~~--~~~-~~~~-----~~~~~p~ilVgnK~DL~~~------------~~~~~~~~~~~~~~~~~~~~~~~S-- 534 (608)
| +++.+ +.+ ..|. ..+++|+||||||+||... .+++.+++..+|+++++.+++++|
T Consensus 81 d--is~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk 158 (222)
T cd04173 81 D--ISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSR 158 (222)
T ss_pred E--CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCC
Confidence 8 88776 333 2221 2478999999999999652 136778999999999986699999
Q ss_pred cCCC-HHHHHHHHHHHHcCCC
Q psy3301 535 AANN-DREVFVKLATMAAFPR 554 (608)
Q Consensus 535 ~~~~-v~e~F~~l~~~a~~p~ 554 (608)
++.+ |+++|..++..++.+.
T Consensus 159 ~~~~~V~~~F~~~~~~~~~~~ 179 (222)
T cd04173 159 SSERSVRDVFHVATVASLGRG 179 (222)
T ss_pred cCCcCHHHHHHHHHHHHHhcc
Confidence 6774 9999999999988765
No 169
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.77 E-value=4.3e-18 Score=159.27 Aligned_cols=140 Identities=16% Similarity=0.138 Sum_probs=99.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCc-CCCCCcceEecCccCCCc-eeEEEEeCCCCCC----C---hHHHHHHHHhcC
Q psy3301 12 RILLLGDRHVGKTSLILSLVSEEFPEL-VPSKAEEITIPPDVTPEM-VPTHIVDYSEVDQ----T---VDELTEEIQKAH 82 (608)
Q Consensus 12 kI~lvG~~~vGKTSLi~~l~~~~~~~~-~~~~~~~~~i~~~~~~~~-~~~~i~Dt~G~~~----~---~~~~~~~~~~ad 82 (608)
+|+++|.+|||||||+++|.+...... .+..+....+ ..+...+ ..+.+|||||+.. . .......+..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~-~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNL-GVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcc-eEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 589999999999999999998654221 1221111111 1122223 4899999999632 1 122233455699
Q ss_pred cEEEEEEcCCh-hhHHHHHHhHHHHHhhhc-cCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCH
Q psy3301 83 VICLVYSVVDD-ASIDRLSSHWLPFLRNCL-VDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNI 143 (608)
Q Consensus 83 ~iilV~d~~~~-~s~~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i 143 (608)
++++|+|++++ ++++.+. .|.+.+.... ...++|+++|+||+|+..... +++||+++.|+
T Consensus 81 ~vi~v~D~~~~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 159 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYK-TIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEGL 159 (170)
T ss_pred EEEEEEecCCCCCHHHHHH-HHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence 99999999999 7888887 7888776421 124789999999999865332 88999999999
Q ss_pred HHHHHHHHHH
Q psy3301 144 SEMFYYAQKA 153 (608)
Q Consensus 144 ~~lf~~l~~~ 153 (608)
+++|+++.+.
T Consensus 160 ~~l~~~i~~~ 169 (170)
T cd01898 160 DELLRKLAEL 169 (170)
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 170
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.77 E-value=6.1e-19 Score=164.56 Aligned_cols=140 Identities=14% Similarity=0.192 Sum_probs=110.9
Q ss_pred eEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEe-------cceEeCCcceeEeeeeccccc------c
Q psy3301 409 VYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTI-------NTTTVYGQEKYLVLKEILVRD------E 475 (608)
Q Consensus 409 ~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i-------~~~~v~Gqe~~~~l~~~~~~~------v 475 (608)
.+||+++|++|||||||+++|+++.|...+.+|++.+.....+.+ .-.+++|+++|..++..++++ |
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 589999999999999999999999998888777655221122223 233448999998888777776 8
Q ss_pred cccCCCCcc--cccccc------cCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHHH
Q psy3301 476 QLPVLLPVD--VDCDKY------FSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFVK 545 (608)
Q Consensus 476 ~d~~l~~~~--~~~~~~------~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~~ 545 (608)
|| +++.+ +.+..| ...+++|+++||||+||.+.+++..+++.++|++++++ ++++| ++.|++++|..
T Consensus 82 ~d--~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~~i~e~f~~ 158 (166)
T cd04122 82 YD--ITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLL-FLECSAKTGENVEDAFLE 158 (166)
T ss_pred EE--CCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHH
Confidence 88 77765 334322 23467999999999999988888888999999999885 88999 89999999999
Q ss_pred HHHHHc
Q psy3301 546 LATMAA 551 (608)
Q Consensus 546 l~~~a~ 551 (608)
+++.+.
T Consensus 159 l~~~~~ 164 (166)
T cd04122 159 TAKKIY 164 (166)
T ss_pred HHHHHh
Confidence 998763
No 171
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.77 E-value=6.6e-19 Score=163.50 Aligned_cols=137 Identities=19% Similarity=0.203 Sum_probs=109.1
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecc-------eEeCCcceeEeeeeccccc------cc
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINT-------TTVYGQEKYLVLKEILVRD------EQ 476 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~-------~~v~Gqe~~~~l~~~~~~~------v~ 476 (608)
+||+|+|++|||||||+++|+++.|...+.+|.+.+.+...+.+++ .+.+|+++|..++..+++. +|
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 5899999999999999999999999888877776522223334433 2338999998888777776 78
Q ss_pred ccCCCCcc--cccccc------cCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHHHH
Q psy3301 477 LPVLLPVD--VDCDKY------FSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFVKL 546 (608)
Q Consensus 477 d~~l~~~~--~~~~~~------~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~~l 546 (608)
| +++.+ +.+..| ....++|+++||||+||.+++++..+++..+++.++++ ++++| ++.|++++|.+|
T Consensus 81 d--~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sa~~~~~v~~~f~~l 157 (161)
T cd04117 81 D--ISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMD-FFETSACTNSNIKESFTRL 157 (161)
T ss_pred E--CCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCE-EEEEeCCCCCCHHHHHHHH
Confidence 8 77765 333322 22357999999999999988888889999999999976 89999 899999999999
Q ss_pred HHH
Q psy3301 547 ATM 549 (608)
Q Consensus 547 ~~~ 549 (608)
++.
T Consensus 158 ~~~ 160 (161)
T cd04117 158 TEL 160 (161)
T ss_pred Hhh
Confidence 864
No 172
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.76 E-value=4.7e-18 Score=166.11 Aligned_cols=149 Identities=33% Similarity=0.486 Sum_probs=124.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCC--CceeEEEEeCCCCCCChHHHHHHHHhcCcEEEE
Q psy3301 10 NVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTP--EMVPTHIVDYSEVDQTVDELTEEIQKAHVICLV 87 (608)
Q Consensus 10 ~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV 87 (608)
.+||+++|++|||||||+++|.++.+...++++............ ..+.+.+|||+|++++...+..++..++++++|
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 489999999999999999999999999887766543333333322 268899999999999999999999999999999
Q ss_pred EEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCC------------C--------------------ccc
Q psy3301 88 YSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYS------------T--------------------VES 135 (608)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~------------~--------------------~e~ 135 (608)
||.++..++..+...|.+.+... .....|+++|+||+|+.... . ++|
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELREL-APDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET 163 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHh-CCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence 99999777777777999998852 22579999999999998763 2 789
Q ss_pred Ccc--cCcCHHHHHHHHHHHHhCCCC
Q psy3301 136 SAK--TLKNISEMFYYAQKAVLHPMA 159 (608)
Q Consensus 136 SAk--~~~~i~~lf~~l~~~i~~~~~ 159 (608)
||+ ++.+|+++|..+.+.+.....
T Consensus 164 s~~~~~~~~v~~~~~~~~~~~~~~~~ 189 (219)
T COG1100 164 SAKSLTGPNVNELFKELLRKLLEEIE 189 (219)
T ss_pred ecccCCCcCHHHHHHHHHHHHHHhhh
Confidence 999 999999999999998865443
No 173
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.75 E-value=6.6e-18 Score=163.22 Aligned_cols=142 Identities=20% Similarity=0.201 Sum_probs=102.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCc-C-CCCCcceEecCccCCCceeEEEEeCCCCCCC-hH-H------HHHHH
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPEL-V-PSKAEEITIPPDVTPEMVPTHIVDYSEVDQT-VD-E------LTEEI 78 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~-~-~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~-~~-~------~~~~~ 78 (608)
..++|+|+|++|||||||++++++..+... . .++.........+. ....+.+|||||.... .. . ....+
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 118 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLP-DGREVLLTDTVGFIRDLPHQLVEAFRSTLEEV 118 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEec-CCceEEEeCCCccccCCCHHHHHHHHHHHHHH
Confidence 357999999999999999999999874322 1 11112122111222 2247999999997321 11 1 11236
Q ss_pred HhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC------------cccCcccCcCHHHH
Q psy3301 79 QKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST------------VESSAKTLKNISEM 146 (608)
Q Consensus 79 ~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~------------~e~SAk~~~~i~~l 146 (608)
..+|++++|+|++++.++.... .|.+.+.. ....++|+++|+||+|+..... +++||+++.|++++
T Consensus 119 ~~~d~ii~v~D~~~~~~~~~~~-~~~~~l~~-~~~~~~~viiV~NK~Dl~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 196 (204)
T cd01878 119 AEADLLLHVVDASDPDYEEQIE-TVEKVLKE-LGAEDIPMILVLNKIDLLDDEELEERLEAGRPDAVFISAKTGEGLDEL 196 (204)
T ss_pred hcCCeEEEEEECCCCChhhHHH-HHHHHHHH-cCcCCCCEEEEEEccccCChHHHHHHhhcCCCceEEEEcCCCCCHHHH
Confidence 7899999999999998888776 67777764 2345789999999999965431 89999999999999
Q ss_pred HHHHHHH
Q psy3301 147 FYYAQKA 153 (608)
Q Consensus 147 f~~l~~~ 153 (608)
++++.+.
T Consensus 197 ~~~L~~~ 203 (204)
T cd01878 197 LEAIEEL 203 (204)
T ss_pred HHHHHhh
Confidence 9998765
No 174
>KOG0395|consensus
Probab=99.75 E-value=1.1e-18 Score=165.70 Aligned_cols=142 Identities=20% Similarity=0.296 Sum_probs=123.1
Q ss_pred eEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecceEe-------CCcceeEeeeeccccc------c
Q psy3301 409 VYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINTTTV-------YGQEKYLVLKEILVRD------E 475 (608)
Q Consensus 409 ~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~~~v-------~Gqe~~~~l~~~~~~~------v 475 (608)
.+|++|+|.+|||||+|+.+|+++.|...|+||+.. .|...+.+++..+ +||+.|..+.+.+.++ |
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied-~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIED-SYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccccCCCccc-cceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 589999999999999999999999999999988875 7777777875443 8999999999998887 8
Q ss_pred cccCCCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHH
Q psy3301 476 QLPVLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFV 544 (608)
Q Consensus 476 ~d~~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~ 544 (608)
|+ +++.. +.+. +......+|++|||||+||...|++..+++..+++.++++ ++++| .+.||+++|.
T Consensus 82 ys--itd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~-f~E~Sak~~~~v~~~F~ 158 (196)
T KOG0395|consen 82 YS--ITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCA-FIETSAKLNYNVDEVFY 158 (196)
T ss_pred EE--CCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCc-EEEeeccCCcCHHHHHH
Confidence 98 88877 2222 2233567999999999999999999999999999999998 99999 6799999999
Q ss_pred HHHHHHcCCC
Q psy3301 545 KLATMAAFPR 554 (608)
Q Consensus 545 ~l~~~a~~p~ 554 (608)
.|.+.+-.|+
T Consensus 159 ~L~r~~~~~~ 168 (196)
T KOG0395|consen 159 ELVREIRLPR 168 (196)
T ss_pred HHHHHHHhhh
Confidence 9999987765
No 175
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.75 E-value=1.8e-18 Score=166.72 Aligned_cols=143 Identities=17% Similarity=0.130 Sum_probs=113.4
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceE--------ecceEeCCcceeEeeeeccccc------c
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYT--------INTTTVYGQEKYLVLKEILVRD------E 475 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~--------i~~~~v~Gqe~~~~l~~~~~~~------v 475 (608)
|||+|+|++|||||||+++|+++.|...+.+|++.+.+...+. +.-.+++|+++|..+++.++++ +
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 5899999999999999999999999888887776522222222 3334459999999999888887 7
Q ss_pred cccCCCCcc--cccccc----------cCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHH
Q psy3301 476 QLPVLLPVD--VDCDKY----------FSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDRE 541 (608)
Q Consensus 476 ~d~~l~~~~--~~~~~~----------~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e 541 (608)
|| +++.+ +.+..| ....++|++|||||+||...+.+..+++.++++.+++.+++++| ++.|+++
T Consensus 81 ~D--~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e 158 (201)
T cd04107 81 FD--VTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEE 158 (201)
T ss_pred EE--CCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHH
Confidence 88 77765 333211 12468999999999999876777888999999999965689999 8999999
Q ss_pred HHHHHHHHHcCCC
Q psy3301 542 VFVKLATMAAFPR 554 (608)
Q Consensus 542 ~F~~l~~~a~~p~ 554 (608)
+|..|++.+....
T Consensus 159 ~f~~l~~~l~~~~ 171 (201)
T cd04107 159 AMRFLVKNILAND 171 (201)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999886654
No 176
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.75 E-value=5.9e-18 Score=157.12 Aligned_cols=134 Identities=21% Similarity=0.148 Sum_probs=93.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCC---CCCcCCCCCcceEecCccCCC-ceeEEEEeCCCCCCChHHHHHHHHhcCcEEE
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEE---FPELVPSKAEEITIPPDVTPE-MVPTHIVDYSEVDQTVDELTEEIQKAHVICL 86 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~---~~~~~~~~~~~~~i~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iil 86 (608)
+.|+++|++|||||||+++|++.. +.....+..+.......+... +..+.+|||||++++......+++.+|++++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 368999999999999999999743 222212211111111111212 5689999999999887777788999999999
Q ss_pred EEEcCC---hhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCC-------------------C---cccCcccCc
Q psy3301 87 VYSVVD---DASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYS-------------------T---VESSAKTLK 141 (608)
Q Consensus 87 V~d~~~---~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-------------------~---~e~SAk~~~ 141 (608)
|+|+++ .++.+.+. .+.. . ...|+++|+||+|+.... . +++||+++.
T Consensus 81 V~d~~~~~~~~~~~~~~-----~~~~--~-~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (164)
T cd04171 81 VVAADEGIMPQTREHLE-----ILEL--L-GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGE 152 (164)
T ss_pred EEECCCCccHhHHHHHH-----HHHH--h-CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCc
Confidence 999987 34443332 2221 1 124999999999996531 0 889999999
Q ss_pred CHHHHHHHHHH
Q psy3301 142 NISEMFYYAQK 152 (608)
Q Consensus 142 ~i~~lf~~l~~ 152 (608)
|+++++..+.+
T Consensus 153 ~v~~l~~~l~~ 163 (164)
T cd04171 153 GIEELKEYLDE 163 (164)
T ss_pred CHHHHHHHHhh
Confidence 99999988754
No 177
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.75 E-value=3e-18 Score=163.48 Aligned_cols=141 Identities=19% Similarity=0.149 Sum_probs=110.0
Q ss_pred EEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEec-------ceEeCCcceeEeeeeccccc------ccc
Q psy3301 411 VCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTIN-------TTTVYGQEKYLVLKEILVRD------EQL 477 (608)
Q Consensus 411 k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~-------~~~v~Gqe~~~~l~~~~~~~------v~d 477 (608)
||+|+|++|||||||+++|+++.|...+.+|.+. .|...+.++ -.+.+|+++|..+++.++++ |||
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~-~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFE-NYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCccee-eeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 7999999999999999999999998888777765 232222233 23449999999999888876 688
Q ss_pred cCCCCcc--cccc-ccc-----CCCCCcEEEEEeCCCCCcchh------------cccccHHHHHHHcCCCCceEEc--c
Q psy3301 478 PVLLPVD--VDCD-KYF-----STSKIPVMLVAGKSDMPRARQ------------DYLMQPDIFCETHKLSPAHSFS--A 535 (608)
Q Consensus 478 ~~l~~~~--~~~~-~~~-----~~~~~p~ilVgnK~DL~~~~~------------~~~~~~~~~~~~~~~~~~~~~S--~ 535 (608)
+++.+ +.+. .|. ..+++|++|||||+||.+.++ +..+++.+++++++..+++++| +
T Consensus 81 --v~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 81 --VDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred --CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 88876 3232 111 136899999999999976542 4456788999988854589999 8
Q ss_pred CCCHHHHHHHHHHHHcCCC
Q psy3301 536 ANNDREVFVKLATMAAFPR 554 (608)
Q Consensus 536 ~~~v~e~F~~l~~~a~~p~ 554 (608)
+.|++++|.+|++.++.|.
T Consensus 159 ~~~v~e~f~~l~~~~~~~~ 177 (189)
T cd04134 159 NRGVNEAFTEAARVALNVR 177 (189)
T ss_pred CCCHHHHHHHHHHHHhccc
Confidence 9999999999999999876
No 178
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.75 E-value=2.4e-17 Score=151.25 Aligned_cols=140 Identities=21% Similarity=0.283 Sum_probs=112.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCc--eeEEEEeCCCCCCChHHHHHHHHhcCcEEEE
Q psy3301 10 NVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEM--VPTHIVDYSEVDQTVDELTEEIQKAHVICLV 87 (608)
Q Consensus 10 ~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV 87 (608)
.+||+++|.+|+|||||++++.+..+.....++.+.......+...+ +.+.+||++|++.+........+.++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 37999999999999999999999986655555544444443333333 7899999999999988888899999999999
Q ss_pred EEcCCh-hhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC----------------cccCcccCcCHHHHHHHH
Q psy3301 88 YSVVDD-ASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST----------------VESSAKTLKNISEMFYYA 150 (608)
Q Consensus 88 ~d~~~~-~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------------~e~SAk~~~~i~~lf~~l 150 (608)
+|+... .++......|...+... ...+.|+++|+||+|+..... +++||++|.|+.++|+++
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHH-AESNVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHh-cccCCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence 999888 77777665677666643 222889999999999976321 999999999999999875
No 179
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.74 E-value=3.7e-18 Score=158.47 Aligned_cols=137 Identities=17% Similarity=0.240 Sum_probs=107.7
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecc-------eEeCCcceeEeeeeccccc------cc
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINT-------TTVYGQEKYLVLKEILVRD------EQ 476 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~-------~~v~Gqe~~~~l~~~~~~~------v~ 476 (608)
+||+|+|++|||||||+++|+++.|...+.+|.+. .+...+.+++ .+.+|+++|..+++.++++ +|
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIED-SYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhh-hEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 79999999999999999999999998888766653 3333333333 3459999999999888877 78
Q ss_pred ccCCCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHHH
Q psy3301 477 LPVLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFVK 545 (608)
Q Consensus 477 d~~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~~ 545 (608)
| +++.+ +.+. +.....++|+++||||+||.+.+++..+++..++++++.+ ++++| ++.|++++|..
T Consensus 81 d--~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~l~~~ 157 (163)
T cd04136 81 S--ITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCP-FYETSAKSKINVDEVFAD 157 (163)
T ss_pred E--CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCe-EEEecCCCCCCHHHHHHH
Confidence 8 77654 2222 2223468999999999999877777777888999999854 89999 89999999999
Q ss_pred HHHHH
Q psy3301 546 LATMA 550 (608)
Q Consensus 546 l~~~a 550 (608)
|++.+
T Consensus 158 l~~~~ 162 (163)
T cd04136 158 LVRQI 162 (163)
T ss_pred HHHhc
Confidence 98764
No 180
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.74 E-value=9.5e-18 Score=173.87 Aligned_cols=142 Identities=19% Similarity=0.154 Sum_probs=103.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCC-cCCCCCcceEecCccCC-CceeEEEEeCCCCCC--ChHH------HHHHH
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPE-LVPSKAEEITIPPDVTP-EMVPTHIVDYSEVDQ--TVDE------LTEEI 78 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~-~~~~~~~~~~i~~~~~~-~~~~~~i~Dt~G~~~--~~~~------~~~~~ 78 (608)
..++|+++|.+|||||||+|+|++..+.. +.+.+ +.......+.. .+.++.+|||+|..+ .... ....+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~t-T~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~ 266 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFA-TLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLEEV 266 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCcc-ccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHHHHH
Confidence 45899999999999999999999987432 22222 22222222222 456899999999722 1111 22358
Q ss_pred HhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCC-----------CcccCcccCcCHHHHH
Q psy3301 79 QKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYS-----------TVESSAKTLKNISEMF 147 (608)
Q Consensus 79 ~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-----------~~e~SAk~~~~i~~lf 147 (608)
..||++++|+|++++.+++.+. .|...+.. ....++|+++|+||+|+.... .+++||++|.|+++++
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~~-~~~~~L~~-l~~~~~piIlV~NK~Dl~~~~~v~~~~~~~~~~i~iSAktg~GI~eL~ 344 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIE-AVEKVLEE-LGAEDIPQLLVYNKIDLLDEPRIERLEEGYPEAVFVSAKTGEGLDLLL 344 (351)
T ss_pred HhCCEEEEEEECCCCchHHHHH-HHHHHHHH-hccCCCCEEEEEEeecCCChHhHHHHHhCCCCEEEEEccCCCCHHHHH
Confidence 8999999999999998888775 56666664 233478999999999996532 1789999999999999
Q ss_pred HHHHHH
Q psy3301 148 YYAQKA 153 (608)
Q Consensus 148 ~~l~~~ 153 (608)
..+.+.
T Consensus 345 ~~I~~~ 350 (351)
T TIGR03156 345 EAIAER 350 (351)
T ss_pred HHHHhh
Confidence 988654
No 181
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.74 E-value=2.7e-17 Score=165.68 Aligned_cols=136 Identities=21% Similarity=0.162 Sum_probs=101.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCc-CCCCCcceEecCccCCCceeEEEEeCCCCCCChH--------HHHHHHHhcC
Q psy3301 12 RILLLGDRHVGKTSLILSLVSEEFPEL-VPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVD--------ELTEEIQKAH 82 (608)
Q Consensus 12 kI~lvG~~~vGKTSLi~~l~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~~ad 82 (608)
+|+|+|.+|||||||+|+|++..+... ..+.+++..+.......+..+.+|||||...... .....+..+|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 699999999999999999999886532 2222233333333334456799999999754321 1345678999
Q ss_pred cEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHH
Q psy3301 83 VICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISE 145 (608)
Q Consensus 83 ~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~ 145 (608)
++++|+|+++..+.+ ..+...+.. .+.|+++|+||+|+..... +++||++|.|+++
T Consensus 82 vvl~VvD~~~~~~~~---~~i~~~l~~----~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~ 154 (270)
T TIGR00436 82 LILFVVDSDQWNGDG---EFVLTKLQN----LKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNTSF 154 (270)
T ss_pred EEEEEEECCCCCchH---HHHHHHHHh----cCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHH
Confidence 999999999887765 245555552 3689999999999974321 8899999999999
Q ss_pred HHHHHHHHH
Q psy3301 146 MFYYAQKAV 154 (608)
Q Consensus 146 lf~~l~~~i 154 (608)
++.++.+.+
T Consensus 155 L~~~l~~~l 163 (270)
T TIGR00436 155 LAAFIEVHL 163 (270)
T ss_pred HHHHHHHhC
Confidence 999998876
No 182
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.74 E-value=3.4e-18 Score=160.77 Aligned_cols=137 Identities=18% Similarity=0.176 Sum_probs=107.7
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecc-------eEeCCcceeEeeeeccccc------cc
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINT-------TTVYGQEKYLVLKEILVRD------EQ 476 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~-------~~v~Gqe~~~~l~~~~~~~------v~ 476 (608)
+||+|+|++|||||||+.+|+.+.|...|.+|... .+...+.+++ .+.+|+++|..+++.++++ ||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 69999999999999999999999999888777643 3333334433 3339999999998888876 79
Q ss_pred ccCCCCcc--cccc-ccc-----CCCCCcEEEEEeCCCCCcc------------hhcccccHHHHHHHcCCCCceEEc--
Q psy3301 477 LPVLLPVD--VDCD-KYF-----STSKIPVMLVAGKSDMPRA------------RQDYLMQPDIFCETHKLSPAHSFS-- 534 (608)
Q Consensus 477 d~~l~~~~--~~~~-~~~-----~~~~~p~ilVgnK~DL~~~------------~~~~~~~~~~~~~~~~~~~~~~~S-- 534 (608)
| +++.+ ..+. .|. ..+++|++|||||+||.+. ++++.+++.++|++++..+++++|
T Consensus 81 d--~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 158 (174)
T cd01871 81 S--LVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 158 (174)
T ss_pred E--CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence 8 87766 3332 121 2358999999999999643 357788999999999965589999
Q ss_pred cCCCHHHHHHHHHHH
Q psy3301 535 AANNDREVFVKLATM 549 (608)
Q Consensus 535 ~~~~v~e~F~~l~~~ 549 (608)
++.|++++|..+++.
T Consensus 159 ~~~~i~~~f~~l~~~ 173 (174)
T cd01871 159 TQKGLKTVFDEAIRA 173 (174)
T ss_pred ccCCHHHHHHHHHHh
Confidence 899999999999864
No 183
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.74 E-value=2.6e-18 Score=162.60 Aligned_cols=139 Identities=18% Similarity=0.214 Sum_probs=106.5
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecce-------EeCCcceeEeeeeccccc------cc
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINTT-------TVYGQEKYLVLKEILVRD------EQ 476 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~~-------~v~Gqe~~~~l~~~~~~~------v~ 476 (608)
+||+++|++|||||||++||+++.|...|.+|.+.+.+...+.+++. +++|+++|..+++.++++ ||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999999888888876333334445443 338999999999888876 78
Q ss_pred ccCCCCcc--cccccc------cCCCCCcEEEEEeCCCCCc-----chhcccccHHHHHHHcCCCCceEEc--cCCCHHH
Q psy3301 477 LPVLLPVD--VDCDKY------FSTSKIPVMLVAGKSDMPR-----ARQDYLMQPDIFCETHKLSPAHSFS--AANNDRE 541 (608)
Q Consensus 477 d~~l~~~~--~~~~~~------~~~~~~p~ilVgnK~DL~~-----~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e 541 (608)
| +++.+ +.+..| .....+| ++||||+||.. .+....++++++|+.++++ ++++| ++.|+++
T Consensus 81 D--~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~-~~e~SAk~g~~v~~ 156 (182)
T cd04128 81 D--LTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAP-LIFCSTSHSINVQK 156 (182)
T ss_pred E--CcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCE-EEEEeCCCCCCHHH
Confidence 9 88776 333322 2234577 68999999952 1112246788999999975 89999 8999999
Q ss_pred HHHHHHHHHcC
Q psy3301 542 VFVKLATMAAF 552 (608)
Q Consensus 542 ~F~~l~~~a~~ 552 (608)
+|..+++.++.
T Consensus 157 lf~~l~~~l~~ 167 (182)
T cd04128 157 IFKIVLAKAFD 167 (182)
T ss_pred HHHHHHHHHHh
Confidence 99999998865
No 184
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.74 E-value=3.6e-18 Score=161.49 Aligned_cols=141 Identities=14% Similarity=0.137 Sum_probs=112.0
Q ss_pred ceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCc-----------------eEecceEeCCcceeEeeeec
Q psy3301 408 NVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPP-----------------YTINTTTVYGQEKYLVLKEI 470 (608)
Q Consensus 408 ~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~-----------------~~i~~~~v~Gqe~~~~l~~~ 470 (608)
+.+||+++|++|||||||+++|+++.|...+.+|++.+..... +.+.-.+++||++|..++..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 5689999999999999999999999999888777765222222 23334455999999888888
Q ss_pred cccc------ccccCCCCcc--ccccc-------ccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc-
Q psy3301 471 LVRD------EQLPVLLPVD--VDCDK-------YFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS- 534 (608)
Q Consensus 471 ~~~~------v~d~~l~~~~--~~~~~-------~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S- 534 (608)
++++ ||| +++.+ ..+.. ....+++|+++||||+||.+.+++..+++.+++++++++ ++++|
T Consensus 83 ~~~~~~~~i~v~d--~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sa 159 (180)
T cd04127 83 FFRDAMGFLLIFD--LTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIP-YFETSA 159 (180)
T ss_pred HhCCCCEEEEEEE--CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCe-EEEEeC
Confidence 7776 788 77655 33322 222468999999999999887888888899999999986 89999
Q ss_pred -cCCCHHHHHHHHHHHHc
Q psy3301 535 -AANNDREVFVKLATMAA 551 (608)
Q Consensus 535 -~~~~v~e~F~~l~~~a~ 551 (608)
++.|++++|..|++.++
T Consensus 160 k~~~~v~~l~~~l~~~~~ 177 (180)
T cd04127 160 ATGTNVEKAVERLLDLVM 177 (180)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 89999999999998764
No 185
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.74 E-value=7.6e-18 Score=147.87 Aligned_cols=113 Identities=39% Similarity=0.579 Sum_probs=83.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCC-CcCCCCCcceEe---cCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEE
Q psy3301 12 RILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITI---PPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLV 87 (608)
Q Consensus 12 kI~lvG~~~vGKTSLi~~l~~~~~~-~~~~~~~~~~~i---~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV 87 (608)
||+|+|++|||||||+++|++..+. ...+......++ ..........+.+||++|++.+...+...+..+|++|+|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999999887 111111111111 122334444589999999988877767779999999999
Q ss_pred EEcCChhhHHHHHHh--HHHHHhhhccCCCCcEEEEEeCcC
Q psy3301 88 YSVVDDASIDRLSSH--WLPFLRNCLVDTCLPIVLVGNKVD 126 (608)
Q Consensus 88 ~d~~~~~s~~~~~~~--~~~~i~~~~~~~~~piilv~nK~D 126 (608)
||++++.|++.+... |+..+. ....++|++|||||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~--~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIR--KRDKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHH--HHSSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHH--ccCCCCCEEEEEeccC
Confidence 999999999998633 677776 3456799999999998
No 186
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.74 E-value=4.4e-18 Score=158.37 Aligned_cols=137 Identities=18% Similarity=0.230 Sum_probs=108.1
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEec-------ceEeCCcceeEeeeeccccc------cc
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTIN-------TTTVYGQEKYLVLKEILVRD------EQ 476 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~-------~~~v~Gqe~~~~l~~~~~~~------v~ 476 (608)
+||+++|++|||||||+++|+.+.|...+.+|++. .+...+.++ -.+++|+++|..+++.++++ +|
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIED-SYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchh-eEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 79999999999999999999999998888777654 222223333 34459999999999988887 78
Q ss_pred ccCCCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHHH
Q psy3301 477 LPVLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFVK 545 (608)
Q Consensus 477 d~~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~~ 545 (608)
| +++.. +.+. ++....++|+++||||+||.+.+.+...++.+++++++++ ++++| ++.|++++|.+
T Consensus 81 d--~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~~~~~ 157 (164)
T cd04175 81 S--ITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCA-FLETSAKAKINVNEIFYD 157 (164)
T ss_pred E--CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCE-EEEeeCCCCCCHHHHHHH
Confidence 8 66544 2222 2233578999999999999887777777888999999975 89999 89999999999
Q ss_pred HHHHH
Q psy3301 546 LATMA 550 (608)
Q Consensus 546 l~~~a 550 (608)
|++.+
T Consensus 158 l~~~l 162 (164)
T cd04175 158 LVRQI 162 (164)
T ss_pred HHHHh
Confidence 98765
No 187
>PRK15494 era GTPase Era; Provisional
Probab=99.74 E-value=1.8e-17 Score=171.66 Aligned_cols=148 Identities=18% Similarity=0.235 Sum_probs=104.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCc-CCCCCcceEecCccCCCceeEEEEeCCCCCCC-hHH-------HHHHH
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPEL-VPSKAEEITIPPDVTPEMVPTHIVDYSEVDQT-VDE-------LTEEI 78 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~-~~~-------~~~~~ 78 (608)
++.++|+++|++|||||||+++|++..+... ..+.+++..+...+...+.++.+|||||.... ... ....+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l 129 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL 129 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence 4567999999999999999999999887642 11122233333334455678999999998532 211 12347
Q ss_pred HhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC----------------cccCcccCcC
Q psy3301 79 QKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST----------------VESSAKTLKN 142 (608)
Q Consensus 79 ~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------------~e~SAk~~~~ 142 (608)
..||++++|+|.++ ++......|+..++. .+.|+++|+||+|+..... +++||++|.|
T Consensus 130 ~~aDvil~VvD~~~--s~~~~~~~il~~l~~----~~~p~IlViNKiDl~~~~~~~~~~~l~~~~~~~~i~~iSAktg~g 203 (339)
T PRK15494 130 HSADLVLLIIDSLK--SFDDITHNILDKLRS----LNIVPIFLLNKIDIESKYLNDIKAFLTENHPDSLLFPISALSGKN 203 (339)
T ss_pred hhCCEEEEEEECCC--CCCHHHHHHHHHHHh----cCCCEEEEEEhhcCccccHHHHHHHHHhcCCCcEEEEEeccCccC
Confidence 89999999999664 455555456666653 2568889999999864321 8999999999
Q ss_pred HHHHHHHHHHHHhCCCCCcc
Q psy3301 143 ISEMFYYAQKAVLHPMAPIY 162 (608)
Q Consensus 143 i~~lf~~l~~~i~~~~~~l~ 162 (608)
+++++.++.+.+. +..++|
T Consensus 204 v~eL~~~L~~~l~-~~~~~~ 222 (339)
T PRK15494 204 IDGLLEYITSKAK-ISPWLY 222 (339)
T ss_pred HHHHHHHHHHhCC-CCCCCC
Confidence 9999999987664 233444
No 188
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.74 E-value=4.6e-18 Score=164.95 Aligned_cols=139 Identities=19% Similarity=0.221 Sum_probs=108.7
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCC---ceEecceEeCCcceeEeeeeccccc------ccccCC
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDP---PYTINTTTVYGQEKYLVLKEILVRD------EQLPVL 480 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~---~~~i~~~~v~Gqe~~~~l~~~~~~~------v~d~~l 480 (608)
+||+|+|++|||||||+++|+.+.|.. +.+|++.+.+.. .+.+.-.+++|+++|..+++.++++ ||| +
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D--v 77 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD--V 77 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE--C
Confidence 589999999999999999999999975 455665422211 2334445559999999999988887 888 8
Q ss_pred CCcc--cccccc------cCCCCCcEEEEEeCCCCCc-------------------chhcccccHHHHHHHcCC------
Q psy3301 481 LPVD--VDCDKY------FSTSKIPVMLVAGKSDMPR-------------------ARQDYLMQPDIFCETHKL------ 527 (608)
Q Consensus 481 ~~~~--~~~~~~------~~~~~~p~ilVgnK~DL~~-------------------~~~~~~~~~~~~~~~~~~------ 527 (608)
++.+ +.+..+ ...+++|+||||||+||.+ .++++.+++..+|++++.
T Consensus 78 t~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~ 157 (220)
T cd04126 78 SNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDE 157 (220)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccccc
Confidence 8765 333311 1246799999999999976 688889999999999872
Q ss_pred -------CCceEEc--cCCCHHHHHHHHHHHHc
Q psy3301 528 -------SPAHSFS--AANNDREVFVKLATMAA 551 (608)
Q Consensus 528 -------~~~~~~S--~~~~v~e~F~~l~~~a~ 551 (608)
.+++++| +|.||+++|..+++.++
T Consensus 158 ~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 158 DLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred cccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 2488999 89999999999998775
No 189
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.74 E-value=2.9e-18 Score=159.16 Aligned_cols=138 Identities=20% Similarity=0.321 Sum_probs=111.1
Q ss_pred EEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecce-------EeCCcceeEeeeeccccc------ccc
Q psy3301 411 VCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINTT-------TVYGQEKYLVLKEILVRD------EQL 477 (608)
Q Consensus 411 k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~~-------~v~Gqe~~~~l~~~~~~~------v~d 477 (608)
||+|+|++|||||||+++|.++.|...+.+|.+.+.+...+.++.. +.+|+++|..++...++. +||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8999999999999999999999999988888755444444444333 338888888777776665 788
Q ss_pred cCCCCcc--cccccc------cCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHHHHH
Q psy3301 478 PVLLPVD--VDCDKY------FSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFVKLA 547 (608)
Q Consensus 478 ~~l~~~~--~~~~~~------~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~~l~ 547 (608)
+++.+ +.+..| ....++|++|||||+|+.+.+++..+++.++|++++++ ++++| ++.||.++|..++
T Consensus 81 --~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~-~~e~Sa~~~~~v~~~f~~~i 157 (162)
T PF00071_consen 81 --VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVP-YFEVSAKNGENVKEIFQELI 157 (162)
T ss_dssp --TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSE-EEEEBTTTTTTHHHHHHHHH
T ss_pred --ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCE-EEEEECCCCCCHHHHHHHHH
Confidence 87776 444422 22357999999999999988889889999999999955 99999 8999999999999
Q ss_pred HHHc
Q psy3301 548 TMAA 551 (608)
Q Consensus 548 ~~a~ 551 (608)
+.+.
T Consensus 158 ~~i~ 161 (162)
T PF00071_consen 158 RKIL 161 (162)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8764
No 190
>KOG0393|consensus
Probab=99.74 E-value=1.4e-18 Score=161.04 Aligned_cols=143 Identities=20% Similarity=0.222 Sum_probs=122.0
Q ss_pred eEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEec-ceEe-------CCcceeEeeeeccccc------
Q psy3301 409 VYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTIN-TTTV-------YGQEKYLVLKEILVRD------ 474 (608)
Q Consensus 409 ~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~-~~~v-------~Gqe~~~~l~~~~~~~------ 474 (608)
-.||+|||+++||||+|+..|..+.|...|.||... .|...+.++ +..+ +|||.|-.|+...|..
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFd-nys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~ 82 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFD-NYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLL 82 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccCcCcccccCeEEc-cceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEE
Confidence 479999999999999999999999999999888874 777778884 6655 9999998899888887
Q ss_pred ccccCCCCcc--cccc-ccc-----CCCCCcEEEEEeCCCCCcc------------hhcccccHHHHHHHcCCCCceEEc
Q psy3301 475 EQLPVLLPVD--VDCD-KYF-----STSKIPVMLVAGKSDMPRA------------RQDYLMQPDIFCETHKLSPAHSFS 534 (608)
Q Consensus 475 v~d~~l~~~~--~~~~-~~~-----~~~~~p~ilVgnK~DL~~~------------~~~~~~~~~~~~~~~~~~~~~~~S 534 (608)
+|+ +.+.+ +++. +|+ .++++|+||||+|.||+.. ..++.+++.++|++.|+..++++|
T Consensus 83 cfs--v~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS 160 (198)
T KOG0393|consen 83 CFS--VVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS 160 (198)
T ss_pred EEE--cCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence 687 66665 4444 332 2699999999999999842 256789999999999998899999
Q ss_pred --cCCCHHHHHHHHHHHHcCCC
Q psy3301 535 --AANNDREVFVKLATMAAFPR 554 (608)
Q Consensus 535 --~~~~v~e~F~~l~~~a~~p~ 554 (608)
+..|++++|...++.++.|.
T Consensus 161 a~tq~~v~~vF~~a~~~~l~~~ 182 (198)
T KOG0393|consen 161 ALTQKGVKEVFDEAIRAALRPP 182 (198)
T ss_pred hhhhCCcHHHHHHHHHHHhccc
Confidence 89999999999999999986
No 191
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.73 E-value=6.1e-18 Score=153.42 Aligned_cols=118 Identities=24% Similarity=0.268 Sum_probs=87.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCC-----CChHHHHHHHHhcCcEEE
Q psy3301 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVD-----QTVDELTEEIQKAHVICL 86 (608)
Q Consensus 12 kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~-----~~~~~~~~~~~~ad~iil 86 (608)
||+++|++|||||||+++|++..+. +.+ ++..++. ..+|||||+. .+.. ....++++|++++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~-----t~~~~~~-----~~~iDt~G~~~~~~~~~~~-~~~~~~~ad~vil 68 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKK-----TQAVEYN-----DGAIDTPGEYVENRRLYSA-LIVTAADADVIAL 68 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--ccc-----ceeEEEc-----CeeecCchhhhhhHHHHHH-HHHHhhcCCEEEE
Confidence 8999999999999999999988753 222 2222222 1789999973 2222 2235789999999
Q ss_pred EEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHH
Q psy3301 87 VYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYY 149 (608)
Q Consensus 87 V~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~ 149 (608)
|||++++.++... .|...+ ..|+++|+||+|+.+... +++||++|.|++++|.+
T Consensus 69 v~d~~~~~s~~~~--~~~~~~-------~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 139 (142)
T TIGR02528 69 VQSATDPESRFPP--GFASIF-------VKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQGLEALVDY 139 (142)
T ss_pred EecCCCCCcCCCh--hHHHhc-------cCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHH
Confidence 9999999987652 454422 239999999999965321 78999999999999988
Q ss_pred HH
Q psy3301 150 AQ 151 (608)
Q Consensus 150 l~ 151 (608)
+.
T Consensus 140 l~ 141 (142)
T TIGR02528 140 LN 141 (142)
T ss_pred Hh
Confidence 64
No 192
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.73 E-value=4e-17 Score=152.31 Aligned_cols=137 Identities=15% Similarity=0.158 Sum_probs=100.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCC---CceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEE
Q psy3301 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTP---EMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVY 88 (608)
Q Consensus 12 kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~ 88 (608)
.|+|+|++|||||||+++|....+.....+..+.......+.. .+..+.+|||||++.+...+...++.+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 4899999999999999999998876643222222111111222 4678999999999988888888899999999999
Q ss_pred EcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCC-----------------------C-cccCcccCcCHH
Q psy3301 89 SVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYS-----------------------T-VESSAKTLKNIS 144 (608)
Q Consensus 89 d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-----------------------~-~e~SAk~~~~i~ 144 (608)
|+++....+... .+..+. ..++|+++|+||+|+.... . +++||++|.|+.
T Consensus 82 d~~~~~~~~~~~--~~~~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 155 (168)
T cd01887 82 AADDGVMPQTIE--AIKLAK----AANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGID 155 (168)
T ss_pred ECCCCccHHHHH--HHHHHH----HcCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHH
Confidence 999853322221 122233 1468999999999986321 0 789999999999
Q ss_pred HHHHHHHHHH
Q psy3301 145 EMFYYAQKAV 154 (608)
Q Consensus 145 ~lf~~l~~~i 154 (608)
++++++.+..
T Consensus 156 ~l~~~l~~~~ 165 (168)
T cd01887 156 DLLEAILLLA 165 (168)
T ss_pred HHHHHHHHhh
Confidence 9999998765
No 193
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.73 E-value=9.4e-18 Score=157.69 Aligned_cols=139 Identities=19% Similarity=0.199 Sum_probs=107.4
Q ss_pred EEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecc-------eEeCCcceeEeeeeccccc------cccc
Q psy3301 412 CHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINT-------TTVYGQEKYLVLKEILVRD------EQLP 478 (608)
Q Consensus 412 ~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~-------~~v~Gqe~~~~l~~~~~~~------v~d~ 478 (608)
|+|+|++|||||||+++|+++.|...+.++... .+...+.+++ .+++|+++|..++..+++. +||
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d- 78 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFE-NYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFS- 78 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEe-eeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEE-
Confidence 589999999999999999999998888766544 3333333333 3349999999888887766 788
Q ss_pred CCCCcc--cccc-ccc-----CCCCCcEEEEEeCCCCCcch------------hcccccHHHHHHHcCCCCceEEc--cC
Q psy3301 479 VLLPVD--VDCD-KYF-----STSKIPVMLVAGKSDMPRAR------------QDYLMQPDIFCETHKLSPAHSFS--AA 536 (608)
Q Consensus 479 ~l~~~~--~~~~-~~~-----~~~~~p~ilVgnK~DL~~~~------------~~~~~~~~~~~~~~~~~~~~~~S--~~ 536 (608)
+++.+ +.+. .|. ..+++|+++||||+||...+ +++.+++.++++++++.+++++| ++
T Consensus 79 -~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 157 (174)
T smart00174 79 -VDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQ 157 (174)
T ss_pred -CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCC
Confidence 77765 3322 111 13689999999999997533 36677889999999985699999 89
Q ss_pred CCHHHHHHHHHHHHcCC
Q psy3301 537 NNDREVFVKLATMAAFP 553 (608)
Q Consensus 537 ~~v~e~F~~l~~~a~~p 553 (608)
.|++++|..+++.+++|
T Consensus 158 ~~v~~lf~~l~~~~~~~ 174 (174)
T smart00174 158 EGVREVFEEAIRAALNP 174 (174)
T ss_pred CCHHHHHHHHHHHhcCC
Confidence 99999999999998764
No 194
>KOG0073|consensus
Probab=99.73 E-value=9.1e-17 Score=140.77 Aligned_cols=145 Identities=19% Similarity=0.190 Sum_probs=118.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLV 87 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV 87 (608)
.+.++|+++|..|+||||++++|.+..... +.|+...... .+...++.+++||..|+...+..|..|+.++|++|+|
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~~~~-i~pt~gf~Ik--tl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwv 90 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGEDTDT-ISPTLGFQIK--TLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWV 90 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCCccc-cCCccceeeE--EEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEE
Confidence 348999999999999999999999887333 4443322211 2345678999999999999999999999999999999
Q ss_pred EEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC---------------------cccCcccCcCHHHH
Q psy3301 88 YSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST---------------------VESSAKTLKNISEM 146 (608)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~---------------------~e~SAk~~~~i~~l 146 (608)
+|.+|+..++.....+...+.. ......|++|++||.|+...-. +.|||.+|+++.+-
T Consensus 91 vDssD~~r~~e~~~~L~~lL~e-erlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~g 169 (185)
T KOG0073|consen 91 VDSSDRMRMQECKQELTELLVE-ERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEG 169 (185)
T ss_pred EECchHHHHHHHHHHHHHHHhh-hhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHH
Confidence 9999999998888666666664 4455689999999999984322 88999999999999
Q ss_pred HHHHHHHHhC
Q psy3301 147 FYYAQKAVLH 156 (608)
Q Consensus 147 f~~l~~~i~~ 156 (608)
++|+...+..
T Consensus 170 idWL~~~l~~ 179 (185)
T KOG0073|consen 170 IDWLCDDLMS 179 (185)
T ss_pred HHHHHHHHHH
Confidence 9999887754
No 195
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.73 E-value=1e-17 Score=155.71 Aligned_cols=137 Identities=16% Similarity=0.248 Sum_probs=107.3
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecc-------eEeCCcceeEeeeeccccc------cc
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINT-------TTVYGQEKYLVLKEILVRD------EQ 476 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~-------~~v~Gqe~~~~l~~~~~~~------v~ 476 (608)
+||+++|++|||||||+++|+.+.+...+.+|.+. .+...+.+++ .+++|+++|..+++.++++ +|
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIED-FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhh-eEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 79999999999999999999999998888766543 2223343333 3449999999999998887 78
Q ss_pred ccCCCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHHH
Q psy3301 477 LPVLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFVK 545 (608)
Q Consensus 477 d~~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~~ 545 (608)
| +++.+ ..+. +.....++|+++||||+|+...+.+...++..+++.++++ ++++| ++.|++++|..
T Consensus 81 d--~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~l~~~ 157 (163)
T cd04176 81 S--LVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCP-FMETSAKSKTMVNELFAE 157 (163)
T ss_pred E--CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCE-EEEecCCCCCCHHHHHHH
Confidence 8 77765 2332 2223468999999999999876666667789999988874 88999 89999999999
Q ss_pred HHHHH
Q psy3301 546 LATMA 550 (608)
Q Consensus 546 l~~~a 550 (608)
+++.+
T Consensus 158 l~~~l 162 (163)
T cd04176 158 IVRQM 162 (163)
T ss_pred HHHhc
Confidence 98743
No 196
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.72 E-value=1.1e-17 Score=155.94 Aligned_cols=137 Identities=18% Similarity=0.231 Sum_probs=106.6
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCC-------ceEecceEeCCcceeEeeeeccccc------cc
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDP-------PYTINTTTVYGQEKYLVLKEILVRD------EQ 476 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~-------~~~i~~~~v~Gqe~~~~l~~~~~~~------v~ 476 (608)
+||+++|++|||||||+++|+++.|...+.++.+. .+.. .+.+.-.+.+|+++|..++..+++. ||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIED-TYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchh-eEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 79999999999999999999999998877766543 2221 1223344559999999888777665 78
Q ss_pred ccCCCCcc--cccccc---------cCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHH
Q psy3301 477 LPVLLPVD--VDCDKY---------FSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVF 543 (608)
Q Consensus 477 d~~l~~~~--~~~~~~---------~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F 543 (608)
| +++.+ +.+.++ ...+++|+++||||+|+.+.+++...++..+++.+++. ++++| ++.|++++|
T Consensus 81 d--~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~SA~~g~~v~~~f 157 (165)
T cd04140 81 S--VTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCA-FMETSAKTNHNVQELF 157 (165)
T ss_pred E--CCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCc-EEEeecCCCCCHHHHH
Confidence 8 77765 333321 12368999999999999877777777888999999875 89999 899999999
Q ss_pred HHHHHHH
Q psy3301 544 VKLATMA 550 (608)
Q Consensus 544 ~~l~~~a 550 (608)
.+|+.++
T Consensus 158 ~~l~~~~ 164 (165)
T cd04140 158 QELLNLE 164 (165)
T ss_pred HHHHhcc
Confidence 9998764
No 197
>PTZ00369 Ras-like protein; Provisional
Probab=99.72 E-value=1.1e-17 Score=159.56 Aligned_cols=140 Identities=19% Similarity=0.243 Sum_probs=111.2
Q ss_pred eEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEe-------cceEeCCcceeEeeeeccccc------c
Q psy3301 409 VYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTI-------NTTTVYGQEKYLVLKEILVRD------E 475 (608)
Q Consensus 409 ~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i-------~~~~v~Gqe~~~~l~~~~~~~------v 475 (608)
.+||+|+|++|||||||+++|+++.|...+.+|.+. .+...+.+ +-.+++|+++|..+++.++++ +
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv 83 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIED-SYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCV 83 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhh-EEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEE
Confidence 489999999999999999999999998888777654 22222233 334559999999999888877 7
Q ss_pred cccCCCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHH
Q psy3301 476 QLPVLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFV 544 (608)
Q Consensus 476 ~d~~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~ 544 (608)
|| +++.+ +.+. +....+++|+++||||+|+.+.+++...++.++++.++.+ ++++| ++.|++++|.
T Consensus 84 ~D--~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~-~~e~Sak~~~gi~~~~~ 160 (189)
T PTZ00369 84 YS--ITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIP-FLETSAKQRVNVDEAFY 160 (189)
T ss_pred EE--CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCE-EEEeeCCCCCCHHHHHH
Confidence 88 77765 3333 2223468999999999999877777777889999998875 89999 8999999999
Q ss_pred HHHHHHcC
Q psy3301 545 KLATMAAF 552 (608)
Q Consensus 545 ~l~~~a~~ 552 (608)
.|++.+..
T Consensus 161 ~l~~~l~~ 168 (189)
T PTZ00369 161 ELVREIRK 168 (189)
T ss_pred HHHHHHHH
Confidence 99987743
No 198
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.72 E-value=1e-17 Score=156.40 Aligned_cols=141 Identities=18% Similarity=0.165 Sum_probs=109.4
Q ss_pred ceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecc-------eEeCCcceeEeeeeccccc------
Q psy3301 408 NVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINT-------TTVYGQEKYLVLKEILVRD------ 474 (608)
Q Consensus 408 ~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~-------~~v~Gqe~~~~l~~~~~~~------ 474 (608)
..+||+++|++|||||||+++|+++.|...+.++.+.+.....+.+++ .+++|+++|..++..++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 458999999999999999999999999998887776522112222232 3448988888777666655
Q ss_pred ccccCCCCcc--cccccc------cCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHH
Q psy3301 475 EQLPVLLPVD--VDCDKY------FSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFV 544 (608)
Q Consensus 475 v~d~~l~~~~--~~~~~~------~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~ 544 (608)
+|| +++.+ ..+.+| ....++|+++||||+||.+.+++..+++.++++.++++ ++++| ++.|++++|.
T Consensus 82 v~d--~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~~~~ 158 (167)
T cd01867 82 VYD--ITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIK-FLETSAKANINVEEAFF 158 (167)
T ss_pred EEE--CcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCE-EEEEeCCCCCCHHHHHH
Confidence 788 66655 233221 22467999999999999987778788899999999986 89999 8999999999
Q ss_pred HHHHHHc
Q psy3301 545 KLATMAA 551 (608)
Q Consensus 545 ~l~~~a~ 551 (608)
.+++.+.
T Consensus 159 ~i~~~~~ 165 (167)
T cd01867 159 TLAKDIK 165 (167)
T ss_pred HHHHHHH
Confidence 9998774
No 199
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.72 E-value=1.1e-17 Score=156.80 Aligned_cols=139 Identities=20% Similarity=0.172 Sum_probs=105.8
Q ss_pred EEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEec-------ceEeCCcceeEeeeeccccc------ccc
Q psy3301 411 VCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTIN-------TTTVYGQEKYLVLKEILVRD------EQL 477 (608)
Q Consensus 411 k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~-------~~~v~Gqe~~~~l~~~~~~~------v~d 477 (608)
||+++|++|||||||+++|+++.|...|.+|.+.+.+...+.++ -.+++|+++|..++..++++ |||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999999998887662222333333 33448999999888888887 788
Q ss_pred cCCCCcc--ccccc-------ccCCCCCcEEEEEeCCCCCcchh--cccccHHHHHHHcCCCCceEEc--cCCCHHHHHH
Q psy3301 478 PVLLPVD--VDCDK-------YFSTSKIPVMLVAGKSDMPRARQ--DYLMQPDIFCETHKLSPAHSFS--AANNDREVFV 544 (608)
Q Consensus 478 ~~l~~~~--~~~~~-------~~~~~~~p~ilVgnK~DL~~~~~--~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~ 544 (608)
+++.+ ..+.+ .....++|+++||||+||.+.++ +..+++..++++++.+ ++++| ++.|++++|.
T Consensus 82 --~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~g~~v~~lf~ 158 (170)
T cd04108 82 --LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAE-YWSVSALSGENVREFFF 158 (170)
T ss_pred --CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCe-EEEEECCCCCCHHHHHH
Confidence 76654 33332 22234578999999999975443 2355677889998875 89999 8999999999
Q ss_pred HHHHHHcC
Q psy3301 545 KLATMAAF 552 (608)
Q Consensus 545 ~l~~~a~~ 552 (608)
.|++++..
T Consensus 159 ~l~~~~~~ 166 (170)
T cd04108 159 RVAALTFE 166 (170)
T ss_pred HHHHHHHH
Confidence 99998843
No 200
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.72 E-value=1.4e-17 Score=155.36 Aligned_cols=140 Identities=16% Similarity=0.194 Sum_probs=109.9
Q ss_pred eEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCce-------EecceEeCCcceeEeeeeccccc------c
Q psy3301 409 VYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPY-------TINTTTVYGQEKYLVLKEILVRD------E 475 (608)
Q Consensus 409 ~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~-------~i~~~~v~Gqe~~~~l~~~~~~~------v 475 (608)
.+||+|+|++|||||||+++|+++.|...+.++.+.+.....+ .++-++++|+++|..++..++++ +
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 5899999999999999999999999988777666652221222 23334569999998888777766 7
Q ss_pred cccCCCCcc--cccccc------cCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHHH
Q psy3301 476 QLPVLLPVD--VDCDKY------FSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFVK 545 (608)
Q Consensus 476 ~d~~l~~~~--~~~~~~------~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~~ 545 (608)
|| +++.+ ..+..| ...+++|+++||||+|+.+.+++..+++..+++.++++ ++++| ++.|++++|..
T Consensus 82 ~d--~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~~~~~ 158 (166)
T cd01869 82 YD--VTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIP-FLETSAKNATNVEQAFMT 158 (166)
T ss_pred EE--CcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCe-EEEEECCCCcCHHHHHHH
Confidence 88 77765 223222 22367999999999999887878778899999999985 89999 89999999999
Q ss_pred HHHHHc
Q psy3301 546 LATMAA 551 (608)
Q Consensus 546 l~~~a~ 551 (608)
|++.+.
T Consensus 159 i~~~~~ 164 (166)
T cd01869 159 MAREIK 164 (166)
T ss_pred HHHHHH
Confidence 998764
No 201
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.72 E-value=1.4e-17 Score=155.17 Aligned_cols=138 Identities=20% Similarity=0.190 Sum_probs=107.4
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCce-------EecceEeCCcceeEeeeeccccc------cc
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPY-------TINTTTVYGQEKYLVLKEILVRD------EQ 476 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~-------~i~~~~v~Gqe~~~~l~~~~~~~------v~ 476 (608)
+||+++|++|||||||+++|+++.|...+.+|.+.+.....+ .+.-.+.+|+++|..++..++++ +|
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 799999999999999999999999988887776641111222 23333448999998888887777 78
Q ss_pred ccCCCCcc--cccccc------cCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHHHH
Q psy3301 477 LPVLLPVD--VDCDKY------FSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFVKL 546 (608)
Q Consensus 477 d~~l~~~~--~~~~~~------~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~~l 546 (608)
| +++.+ +.+..| ....++|+++||||+||.+.+.+..+++.++++.++++ ++++| ++.|++++|..+
T Consensus 82 d--~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gv~~l~~~l 158 (165)
T cd01865 82 D--ITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFE-FFEASAKENINVKQVFERL 158 (165)
T ss_pred E--CCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHH
Confidence 8 66654 222211 22357899999999999887777778889999999985 89999 899999999999
Q ss_pred HHHH
Q psy3301 547 ATMA 550 (608)
Q Consensus 547 ~~~a 550 (608)
+..+
T Consensus 159 ~~~~ 162 (165)
T cd01865 159 VDII 162 (165)
T ss_pred HHHH
Confidence 9865
No 202
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.71 E-value=1.9e-17 Score=160.57 Aligned_cols=142 Identities=15% Similarity=0.131 Sum_probs=112.5
Q ss_pred eEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCC--------ceEecceEeCCcceeEeeeeccccc------
Q psy3301 409 VYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDP--------PYTINTTTVYGQEKYLVLKEILVRD------ 474 (608)
Q Consensus 409 ~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~--------~~~i~~~~v~Gqe~~~~l~~~~~~~------ 474 (608)
.+||+|+|++|||||||+++|+++.|...+.+|++.+.+.. .+.++-.+++|+++|..++..++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 58999999999999999999999999888877776532222 2334445569999999888887776
Q ss_pred ccccCCCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHH
Q psy3301 475 EQLPVLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVF 543 (608)
Q Consensus 475 v~d~~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F 543 (608)
+|| +++.+ +.+. +......+|++|||||+||.+.+++..+++.++++.++++ ++++| ++.|++++|
T Consensus 82 v~D--~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sak~g~~v~e~f 158 (211)
T cd04111 82 VFD--ITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMK-YIETSARTGDNVEEAF 158 (211)
T ss_pred EEE--CCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCE-EEEEeCCCCCCHHHHH
Confidence 788 77765 2222 2222356889999999999888888888999999999975 89999 899999999
Q ss_pred HHHHHHHcCC
Q psy3301 544 VKLATMAAFP 553 (608)
Q Consensus 544 ~~l~~~a~~p 553 (608)
..|++.+...
T Consensus 159 ~~l~~~~~~~ 168 (211)
T cd04111 159 ELLTQEIYER 168 (211)
T ss_pred HHHHHHHHHH
Confidence 9999877543
No 203
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.71 E-value=1.7e-17 Score=153.58 Aligned_cols=136 Identities=18% Similarity=0.254 Sum_probs=105.2
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceE-------ecceEeCCcceeEeeeeccccc------cc
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYT-------INTTTVYGQEKYLVLKEILVRD------EQ 476 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~-------i~~~~v~Gqe~~~~l~~~~~~~------v~ 476 (608)
+||+++|++|||||||+++|+++.|...+.+|.+. .+...+. ++-++.+|+++|..+++.++++ +|
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchh-eEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 79999999999999999999999998888766654 2222222 3334559999999998888876 77
Q ss_pred ccCCCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHHH
Q psy3301 477 LPVLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFVK 545 (608)
Q Consensus 477 d~~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~~ 545 (608)
| +++.+ ..+. ++....++|+++||||+|+.+ +.+...++.++++.++++ ++++| ++.|++++|..
T Consensus 81 ~--~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l~~~ 156 (162)
T cd04138 81 A--INSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIP-YIETSAKTRQGVEEAFYT 156 (162)
T ss_pred E--CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCe-EEEecCCCCCCHHHHHHH
Confidence 7 76654 2222 222346899999999999976 455567788999998885 88999 89999999999
Q ss_pred HHHHH
Q psy3301 546 LATMA 550 (608)
Q Consensus 546 l~~~a 550 (608)
+++.+
T Consensus 157 l~~~~ 161 (162)
T cd04138 157 LVREI 161 (162)
T ss_pred HHHHh
Confidence 98754
No 204
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.71 E-value=1.6e-17 Score=159.85 Aligned_cols=144 Identities=15% Similarity=0.174 Sum_probs=113.7
Q ss_pred ceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCce-------EecceEeCCcceeEeeeeccccc------
Q psy3301 408 NVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPY-------TINTTTVYGQEKYLVLKEILVRD------ 474 (608)
Q Consensus 408 ~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~-------~i~~~~v~Gqe~~~~l~~~~~~~------ 474 (608)
..+||+|+|++|||||||+++|+++.|...+.+|++.+.....+ .++-.+++|+++|..++..++++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil 84 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV 84 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence 57999999999999999999999999988887777652211222 23334559999998888877776
Q ss_pred ccccCCCCcc--ccccccc-----CCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHHH
Q psy3301 475 EQLPVLLPVD--VDCDKYF-----STSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFVK 545 (608)
Q Consensus 475 v~d~~l~~~~--~~~~~~~-----~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~~ 545 (608)
||| +++.+ ..+..|+ ..+.+|+++||||+|+.+.+++..+++.++++.++.+ ++++| ++.||+++|..
T Consensus 85 v~D--~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~gi~~lf~~ 161 (199)
T cd04110 85 VYD--VTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGIS-LFETSAKENINVEEMFNC 161 (199)
T ss_pred EEE--CCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEECCCCcCHHHHHHH
Confidence 788 77665 3333221 2467999999999999887777778899999999976 89999 89999999999
Q ss_pred HHHHHcCCC
Q psy3301 546 LATMAAFPR 554 (608)
Q Consensus 546 l~~~a~~p~ 554 (608)
|+..++.-+
T Consensus 162 l~~~~~~~~ 170 (199)
T cd04110 162 ITELVLRAK 170 (199)
T ss_pred HHHHHHHhh
Confidence 999887655
No 205
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.71 E-value=2.2e-17 Score=157.73 Aligned_cols=137 Identities=15% Similarity=0.141 Sum_probs=99.8
Q ss_pred eEEEEEEccCCCchHHHHH-HHhcCC-----CCCCCCCCCCC-CcCCC---------------ceEecceEeCCcceeEe
Q psy3301 409 VYVCHVIGNRSTGKTALCQ-SILRKH-----HDSSKTSITSP-VECDP---------------PYTINTTTVYGQEKYLV 466 (608)
Q Consensus 409 ~~k~~viG~~gvGKTsll~-~f~~~~-----~~~~~~~t~~~-~~~~~---------------~~~i~~~~v~Gqe~~~~ 466 (608)
.+||+++|++|||||||+. +++++. |...|.||++. +.|.. .+.+.-.+.+||+++
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 3799999999999999995 666554 45667777742 22211 122222333898863
Q ss_pred eeeccccc------ccccCCCCcc--cccc-ccc-----CCCCCcEEEEEeCCCCCc-------------------chhc
Q psy3301 467 LKEILVRD------EQLPVLLPVD--VDCD-KYF-----STSKIPVMLVAGKSDMPR-------------------ARQD 513 (608)
Q Consensus 467 l~~~~~~~------v~d~~l~~~~--~~~~-~~~-----~~~~~p~ilVgnK~DL~~-------------------~~~~ 513 (608)
+...++++ ||| +++.+ +++. .|. ..+++|++|||||+||.+ .+++
T Consensus 80 ~~~~~~~~ad~iilv~d--~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V 157 (195)
T cd01873 80 DRRFAYGRSDVVLLCFS--IASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL 157 (195)
T ss_pred hhcccCCCCCEEEEEEE--CCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence 45556666 888 88776 3332 121 136899999999999974 4778
Q ss_pred ccccHHHHHHHcCCCCceEEc--cCCCHHHHHHHHHHHH
Q psy3301 514 YLMQPDIFCETHKLSPAHSFS--AANNDREVFVKLATMA 550 (608)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~~l~~~a 550 (608)
+.++++++|++++++ ++++| ++.||+++|..++++|
T Consensus 158 ~~~e~~~~a~~~~~~-~~E~SAkt~~~V~e~F~~~~~~~ 195 (195)
T cd01873 158 PPETGRAVAKELGIP-YYETSVVTQFGVKDVFDNAIRAA 195 (195)
T ss_pred CHHHHHHHHHHhCCE-EEEcCCCCCCCHHHHHHHHHHhC
Confidence 889999999999994 99999 8999999999999864
No 206
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.71 E-value=1.3e-17 Score=162.38 Aligned_cols=141 Identities=16% Similarity=0.153 Sum_probs=112.4
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEe--------cceEeCCcceeEeeeeccccc------c
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTI--------NTTTVYGQEKYLVLKEILVRD------E 475 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i--------~~~~v~Gqe~~~~l~~~~~~~------v 475 (608)
+|++++|++|||||||+++|+++.|...|.+|.+.+.+...+.+ .-.+++|++.|..+++.++++ |
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 58999999999999999999999999988888876333333333 334459999998888888877 8
Q ss_pred cccCCCCcc--cccc-------cccC--CCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHH
Q psy3301 476 QLPVLLPVD--VDCD-------KYFS--TSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREV 542 (608)
Q Consensus 476 ~d~~l~~~~--~~~~-------~~~~--~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~ 542 (608)
|| +++.+ +.+. +... ..++|+++||||+||.+.++++.+++.++++.++++ ++++| ++.|++++
T Consensus 81 ~D--~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~-~~~iSAktg~gv~~l 157 (215)
T cd04109 81 YD--VTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGME-SCLVSAKTGDRVNLL 157 (215)
T ss_pred EE--CCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEECCCCCCHHHH
Confidence 88 88765 3332 1111 246789999999999888888888999999999985 88899 89999999
Q ss_pred HHHHHHHHcCC
Q psy3301 543 FVKLATMAAFP 553 (608)
Q Consensus 543 F~~l~~~a~~p 553 (608)
|..|++.+...
T Consensus 158 f~~l~~~l~~~ 168 (215)
T cd04109 158 FQQLAAELLGV 168 (215)
T ss_pred HHHHHHHHHhc
Confidence 99999988643
No 207
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.71 E-value=1.8e-17 Score=161.70 Aligned_cols=141 Identities=19% Similarity=0.166 Sum_probs=108.7
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCce-------EecceEeCCcceeEeeeeccccc-----
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPY-------TINTTTVYGQEKYLVLKEILVRD----- 474 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~-------~i~~~~v~Gqe~~~~l~~~~~~~----- 474 (608)
...+||+|+|++|||||||+++|+.+.|...+.+|++.+.+...+ .+.-.+++|+++|..++..++++
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 456999999999999999999999999998888888763332223 22333449999999999888777
Q ss_pred -ccccCCCCcc--ccccccc-----CCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHH
Q psy3301 475 -EQLPVLLPVD--VDCDKYF-----STSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFV 544 (608)
Q Consensus 475 -v~d~~l~~~~--~~~~~~~-----~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~ 544 (608)
||| +++.+ ..+..|+ ..+++|++|||||+||.. +.+..++. +++++.++. ++++| ++.|++++|.
T Consensus 91 lvfD--~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~-~~e~SAk~~~~i~~~f~ 165 (219)
T PLN03071 91 IMFD--VTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQ-YYEISAKSNYNFEKPFL 165 (219)
T ss_pred EEEe--CCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCE-EEEcCCCCCCCHHHHHH
Confidence 789 88766 4333221 246899999999999964 33433444 788888876 89999 8999999999
Q ss_pred HHHHHHcC
Q psy3301 545 KLATMAAF 552 (608)
Q Consensus 545 ~l~~~a~~ 552 (608)
+|++.+..
T Consensus 166 ~l~~~~~~ 173 (219)
T PLN03071 166 YLARKLAG 173 (219)
T ss_pred HHHHHHHc
Confidence 99998854
No 208
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.71 E-value=1.1e-16 Score=164.70 Aligned_cols=144 Identities=17% Similarity=0.140 Sum_probs=106.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCc-CCCCCcceEecCccC-CCceeEEEEeCCCCCC-------ChHHHHHHHHhc
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPEL-VPSKAEEITIPPDVT-PEMVPTHIVDYSEVDQ-------TVDELTEEIQKA 81 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~~-~~~~~~~~~i~~~~~-~~~~~~~i~Dt~G~~~-------~~~~~~~~~~~a 81 (608)
-.|+|||.||||||||+++|.+...... ++.++....+. .+. ....++.+||+||..+ ....+...++++
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G-~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLG-VVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEE-EEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 4699999999999999999998654322 44432222222 122 2456799999999632 112334466789
Q ss_pred CcEEEEEEcCChhhHHHHHHhHHHHHhhhc-cCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCH
Q psy3301 82 HVICLVYSVVDDASIDRLSSHWLPFLRNCL-VDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNI 143 (608)
Q Consensus 82 d~iilV~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i 143 (608)
+++++|+|+++.++++.+. .|..++.... ...++|+++|+||+|+..... +++||+++.||
T Consensus 238 ~vlI~ViD~s~~~s~e~~~-~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI 316 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDYK-TIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGL 316 (335)
T ss_pred CEEEEEEcCCCCCCHHHHH-HHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCH
Confidence 9999999999988888887 7888887531 124789999999999865432 78999999999
Q ss_pred HHHHHHHHHHHhC
Q psy3301 144 SEMFYYAQKAVLH 156 (608)
Q Consensus 144 ~~lf~~l~~~i~~ 156 (608)
+++++++.+.+..
T Consensus 317 ~eL~~~L~~~l~~ 329 (335)
T PRK12299 317 DELLRALWELLEE 329 (335)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887743
No 209
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.71 E-value=1.8e-17 Score=158.19 Aligned_cols=140 Identities=19% Similarity=0.229 Sum_probs=110.0
Q ss_pred EEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceE-------ecceEeCCcceeEeeeeccccc------ccc
Q psy3301 411 VCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYT-------INTTTVYGQEKYLVLKEILVRD------EQL 477 (608)
Q Consensus 411 k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~-------i~~~~v~Gqe~~~~l~~~~~~~------v~d 477 (608)
||+|+|++|||||||+++|+.+.|...+.+|.+. .+..... +.-.+++|+++|..+++.++++ +||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIED-SYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHh-hEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 6899999999999999999999998888766654 2222222 3334459999999999888876 788
Q ss_pred cCCCCcc--cccccc-------c--CCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHH
Q psy3301 478 PVLLPVD--VDCDKY-------F--STSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFV 544 (608)
Q Consensus 478 ~~l~~~~--~~~~~~-------~--~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~ 544 (608)
+++.+ +.+..| . ..+++|+++||||+|+.+.+++...++.++++.++++ ++++| ++.|++++|.
T Consensus 80 --~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~SAk~~~~v~~l~~ 156 (190)
T cd04144 80 --ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCE-FIEASAKTNVNVERAFY 156 (190)
T ss_pred --CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCE-EEEecCCCCCCHHHHHH
Confidence 77765 333311 1 1367999999999999877777778889999999985 89999 8999999999
Q ss_pred HHHHHHcCCC
Q psy3301 545 KLATMAAFPR 554 (608)
Q Consensus 545 ~l~~~a~~p~ 554 (608)
.+++.....+
T Consensus 157 ~l~~~l~~~~ 166 (190)
T cd04144 157 TLVRALRQQR 166 (190)
T ss_pred HHHHHHHHhh
Confidence 9999887665
No 210
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.71 E-value=1.6e-16 Score=146.22 Aligned_cols=136 Identities=23% Similarity=0.307 Sum_probs=101.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHcCCCCC--cCCCCCcceEecCccCCCceeEEEEeCCCCCCChHH--------HHHHHH
Q psy3301 10 NVRILLLGDRHVGKTSLILSLVSEEFPE--LVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDE--------LTEEIQ 79 (608)
Q Consensus 10 ~~kI~lvG~~~vGKTSLi~~l~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~~ 79 (608)
.++|+++|++|+|||||++++.+..... +.+++. .......+...+.++.+|||||...+... ....+.
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTT-RDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCc-cceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 3689999999999999999999887532 232222 22222233445678999999998665432 235678
Q ss_pred hcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC----------cccCcccCcCHHHHHHH
Q psy3301 80 KAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST----------VESSAKTLKNISEMFYY 149 (608)
Q Consensus 80 ~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~e~SAk~~~~i~~lf~~ 149 (608)
.+|++++|+|++++.+..... .|.. ..+.|+++|+||+|+..... +++||+++.|+++++.+
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~-~~~~-------~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 151 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLE-ILEL-------PADKPIIVVLNKSDLLPDSELLSLLAGKPIIAISAKTGEGLDELKEA 151 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHH-HHHh-------hcCCCEEEEEEchhcCCccccccccCCCceEEEECCCCCCHHHHHHH
Confidence 999999999999988877655 2222 34789999999999875441 99999999999999999
Q ss_pred HHHHH
Q psy3301 150 AQKAV 154 (608)
Q Consensus 150 l~~~i 154 (608)
+.+.+
T Consensus 152 l~~~~ 156 (157)
T cd04164 152 LLELA 156 (157)
T ss_pred HHHhh
Confidence 87754
No 211
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.71 E-value=1.6e-17 Score=155.54 Aligned_cols=139 Identities=16% Similarity=0.241 Sum_probs=107.0
Q ss_pred ceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEe-------cceEeCCcceeEeeeeccccc------
Q psy3301 408 NVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTI-------NTTTVYGQEKYLVLKEILVRD------ 474 (608)
Q Consensus 408 ~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i-------~~~~v~Gqe~~~~l~~~~~~~------ 474 (608)
..+||+|+|++|||||||+++|+++.|...+.++++.+.....+.+ .-.+++|+++|..++..+++.
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLL 83 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEE
Confidence 5699999999999999999999999998877666655222222223 333559999999888888776
Q ss_pred ccccCCCCcc--cccccc-------c---CCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHH
Q psy3301 475 EQLPVLLPVD--VDCDKY-------F---STSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDR 540 (608)
Q Consensus 475 v~d~~l~~~~--~~~~~~-------~---~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~ 540 (608)
+|| +++.+ +.+..| . ...++|+++||||+|+. .+++..+++.+++++++..+++++| ++.|+.
T Consensus 84 v~d--~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 160 (170)
T cd04116 84 TFA--VDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVA 160 (170)
T ss_pred EEE--CCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHH
Confidence 687 77655 333211 1 13579999999999997 4667778899999999876689999 899999
Q ss_pred HHHHHHHHH
Q psy3301 541 EVFVKLATM 549 (608)
Q Consensus 541 e~F~~l~~~ 549 (608)
++|..+++.
T Consensus 161 ~~~~~~~~~ 169 (170)
T cd04116 161 AAFEEAVRR 169 (170)
T ss_pred HHHHHHHhh
Confidence 999999874
No 212
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.71 E-value=2.1e-17 Score=153.61 Aligned_cols=138 Identities=17% Similarity=0.215 Sum_probs=106.9
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceE-------ecceEeCCcceeEeeeeccccc------cc
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYT-------INTTTVYGQEKYLVLKEILVRD------EQ 476 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~-------i~~~~v~Gqe~~~~l~~~~~~~------v~ 476 (608)
+||+|+|++|||||||+++|+++.+...+.++.+. .+...+. +.-++++|+++|..+++.+++. +|
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIED-SYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhh-hEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 58999999999999999999999998887766543 2222222 3334559999998888877776 78
Q ss_pred ccCCCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHHH
Q psy3301 477 LPVLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFVK 545 (608)
Q Consensus 477 d~~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~~ 545 (608)
| +++.+ +.+. +.....++|+++||||+|+...+.+..+++..+++.++.+ ++++| ++.|++++|..
T Consensus 80 d--~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~l~~~ 156 (164)
T smart00173 80 S--ITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCP-FLETSAKERVNVDEAFYD 156 (164)
T ss_pred E--CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCE-EEEeecCCCCCHHHHHHH
Confidence 8 66654 2222 2223457999999999999877777778889999999865 89999 89999999999
Q ss_pred HHHHHc
Q psy3301 546 LATMAA 551 (608)
Q Consensus 546 l~~~a~ 551 (608)
|++.+.
T Consensus 157 l~~~~~ 162 (164)
T smart00173 157 LVREIR 162 (164)
T ss_pred HHHHHh
Confidence 998753
No 213
>KOG0075|consensus
Probab=99.70 E-value=3.2e-17 Score=140.50 Aligned_cols=144 Identities=19% Similarity=0.205 Sum_probs=123.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLV 87 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV 87 (608)
+..+.+.++|-.++|||||++....+.+.+.+-|+..... ..++...+.+.+||.+|+++|+..+..+++.++++++|
T Consensus 18 k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnm--rk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 18 KEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNM--RKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred HheeeEEEEeeccCCcceEEEEEeeccchhhhccccccee--EEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 3568899999999999999999999888877544332221 14567789999999999999999999999999999999
Q ss_pred EEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC--------------------cccCcccCcCHHHHH
Q psy3301 88 YSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST--------------------VESSAKTLKNISEMF 147 (608)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------------------~e~SAk~~~~i~~lf 147 (608)
+|+.+++.++..++.+..++.. ..-.++|+++.|||.|+...-. +.+|+|+..||+.+.
T Consensus 96 VDaad~~k~~~sr~EL~~LL~k-~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~ 174 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLLDK-PSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDITL 174 (186)
T ss_pred eecCCcccchhhHHHHHHHhcc-hhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHH
Confidence 9999999998888777777775 4667899999999999987644 889999999999999
Q ss_pred HHHHHHH
Q psy3301 148 YYAQKAV 154 (608)
Q Consensus 148 ~~l~~~i 154 (608)
+|+.+.-
T Consensus 175 ~Wli~hs 181 (186)
T KOG0075|consen 175 DWLIEHS 181 (186)
T ss_pred HHHHHHh
Confidence 9998764
No 214
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.70 E-value=1.1e-16 Score=147.37 Aligned_cols=133 Identities=20% Similarity=0.220 Sum_probs=96.5
Q ss_pred EEEcCCCCCHHHHHHHHHcCCC--CCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChH--------HHHHHHHhcCc
Q psy3301 14 LLLGDRHVGKTSLILSLVSEEF--PELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVD--------ELTEEIQKAHV 83 (608)
Q Consensus 14 ~lvG~~~vGKTSLi~~l~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~~ad~ 83 (608)
+++|.+|||||||+++|.+... ....+++ +...........+..+.+|||||...+.. .....++.+|+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ 79 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGV-TRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADV 79 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCc-eeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCE
Confidence 5899999999999999998752 2223332 22222223334557899999999888654 33456889999
Q ss_pred EEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-------------cccCcccCcCHHHHHHHH
Q psy3301 84 ICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-------------VESSAKTLKNISEMFYYA 150 (608)
Q Consensus 84 iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-------------~e~SAk~~~~i~~lf~~l 150 (608)
+++|+|+.+..+.... .+...++. .+.|+++|+||+|+..... +++||+++.|++++|+++
T Consensus 80 ii~v~d~~~~~~~~~~--~~~~~~~~----~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 153 (157)
T cd01894 80 ILFVVDGREGLTPADE--EIAKYLRK----SKKPVILVVNKVDNIKEEDEAAEFYSLGFGEPIPISAEHGRGIGDLLDAI 153 (157)
T ss_pred EEEEEeccccCCccHH--HHHHHHHh----cCCCEEEEEECcccCChHHHHHHHHhcCCCCeEEEecccCCCHHHHHHHH
Confidence 9999999876554432 23333332 3589999999999876432 899999999999999998
Q ss_pred HHH
Q psy3301 151 QKA 153 (608)
Q Consensus 151 ~~~ 153 (608)
++.
T Consensus 154 ~~~ 156 (157)
T cd01894 154 LEL 156 (157)
T ss_pred Hhh
Confidence 875
No 215
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.70 E-value=5.5e-17 Score=152.46 Aligned_cols=139 Identities=16% Similarity=0.146 Sum_probs=106.5
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEe-------cceEeCCcceeEeeeeccccc------cc
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTI-------NTTTVYGQEKYLVLKEILVRD------EQ 476 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i-------~~~~v~Gqe~~~~l~~~~~~~------v~ 476 (608)
+||+|+|++|||||||+++|+++.|...+.++... .+...+.+ +-.+.+|++.|..+++.+++. +|
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFD-HYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-eeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 58999999999999999999999998877766543 22222333 334559999999888887776 67
Q ss_pred ccCCCCcc--cccc-cc-----cCCCCCcEEEEEeCCCCCcc------------hhcccccHHHHHHHcCCCCceEEc--
Q psy3301 477 LPVLLPVD--VDCD-KY-----FSTSKIPVMLVAGKSDMPRA------------RQDYLMQPDIFCETHKLSPAHSFS-- 534 (608)
Q Consensus 477 d~~l~~~~--~~~~-~~-----~~~~~~p~ilVgnK~DL~~~------------~~~~~~~~~~~~~~~~~~~~~~~S-- 534 (608)
| +++.+ +.+. .| ...+++|+++||||+||.+. ++++.+++..+++++++.+++++|
T Consensus 80 ~--~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 157 (174)
T cd04135 80 S--VVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSAL 157 (174)
T ss_pred E--CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCC
Confidence 7 66654 2221 11 11578999999999998643 256677899999999986689999
Q ss_pred cCCCHHHHHHHHHHHHc
Q psy3301 535 AANNDREVFVKLATMAA 551 (608)
Q Consensus 535 ~~~~v~e~F~~l~~~a~ 551 (608)
++.|++++|..+++.++
T Consensus 158 ~~~gi~~~f~~~~~~~~ 174 (174)
T cd04135 158 TQKGLKTVFDEAILAIL 174 (174)
T ss_pred cCCCHHHHHHHHHHHhC
Confidence 89999999999998874
No 216
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.70 E-value=2.3e-16 Score=171.11 Aligned_cols=140 Identities=24% Similarity=0.209 Sum_probs=103.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCC--cCCCCCcceEecCccCCCceeEEEEeCCCCCC----------ChHHH-H
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPE--LVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQ----------TVDEL-T 75 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~----------~~~~~-~ 75 (608)
..+||+++|.+|||||||+++|++..+.. ..+++ +...+...+...+..+.+|||+|..+ +.... .
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gt-T~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~ 288 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGT-TVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTH 288 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCc-cCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHH
Confidence 46899999999999999999999987532 23332 33333233334556788999999632 21111 3
Q ss_pred HHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC--------------------ccc
Q psy3301 76 EEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST--------------------VES 135 (608)
Q Consensus 76 ~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------------------~e~ 135 (608)
..++.||++++|||++++.+++.+. ++..+. ..++|+|||+||+|+..... +++
T Consensus 289 ~~i~~ad~vilV~Da~~~~s~~~~~--~~~~~~----~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 362 (472)
T PRK03003 289 AAIEAAEVAVVLIDASEPISEQDQR--VLSMVI----EAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNI 362 (472)
T ss_pred HHHhcCCEEEEEEeCCCCCCHHHHH--HHHHHH----HcCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEE
Confidence 4578999999999999998888764 444444 24789999999999964210 889
Q ss_pred CcccCcCHHHHHHHHHHHHh
Q psy3301 136 SAKTLKNISEMFYYAQKAVL 155 (608)
Q Consensus 136 SAk~~~~i~~lf~~l~~~i~ 155 (608)
||++|.||+++|..+.+.+.
T Consensus 363 SAk~g~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 363 SAKTGRAVDKLVPALETALE 382 (472)
T ss_pred ECCCCCCHHHHHHHHHHHHH
Confidence 99999999999999877653
No 217
>PLN03108 Rab family protein; Provisional
Probab=99.70 E-value=3.6e-17 Score=158.62 Aligned_cols=143 Identities=19% Similarity=0.212 Sum_probs=111.1
Q ss_pred ceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEe-------cceEeCCcceeEeeeeccccc------
Q psy3301 408 NVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTI-------NTTTVYGQEKYLVLKEILVRD------ 474 (608)
Q Consensus 408 ~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i-------~~~~v~Gqe~~~~l~~~~~~~------ 474 (608)
+.+||+|+|++|||||||+++|++..|...+.++++.+.....+.+ +-.+++|+++|..++..+++.
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vl 84 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence 5699999999999999999999999998887777665221122223 333448998888877776665
Q ss_pred ccccCCCCcc--cccccc------cCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHH
Q psy3301 475 EQLPVLLPVD--VDCDKY------FSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFV 544 (608)
Q Consensus 475 v~d~~l~~~~--~~~~~~------~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~ 544 (608)
+|| +++.+ ..+.+| ...+++|+++||||+||.+.++++.+++++++++++++ ++++| ++.|++++|.
T Consensus 85 v~D--~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~~v~e~f~ 161 (210)
T PLN03108 85 VYD--ITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFI 161 (210)
T ss_pred EEE--CCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCE-EEEEeCCCCCCHHHHHH
Confidence 788 66654 333222 23468999999999999988888888999999999985 88999 8999999999
Q ss_pred HHHHHHcCC
Q psy3301 545 KLATMAAFP 553 (608)
Q Consensus 545 ~l~~~a~~p 553 (608)
++++.++..
T Consensus 162 ~l~~~~~~~ 170 (210)
T PLN03108 162 KTAAKIYKK 170 (210)
T ss_pred HHHHHHHHH
Confidence 999988653
No 218
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.70 E-value=3.2e-17 Score=152.69 Aligned_cols=140 Identities=16% Similarity=0.218 Sum_probs=107.4
Q ss_pred ceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEec-------ceEeCCcceeEeeeeccccc------
Q psy3301 408 NVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTIN-------TTTVYGQEKYLVLKEILVRD------ 474 (608)
Q Consensus 408 ~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~-------~~~v~Gqe~~~~l~~~~~~~------ 474 (608)
+.+||+|+|++|||||||+++++.+.|...+.++.+.+.....+.++ -.+.+|+++|..+++.+++.
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 45899999999999999999999999988777666541111223333 33448988888777776665
Q ss_pred ccccCCCCcc--ccccc------ccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHH
Q psy3301 475 EQLPVLLPVD--VDCDK------YFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFV 544 (608)
Q Consensus 475 v~d~~l~~~~--~~~~~------~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~ 544 (608)
+|| +++.. ..+.. .....++|+++||||+|+.+.+++...++.++++.+++..++++| ++.|++++|.
T Consensus 82 v~d--~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~ 159 (165)
T cd01864 82 AYD--ITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFL 159 (165)
T ss_pred EEE--CcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHH
Confidence 788 66654 33332 223468999999999999887777778899999999987689999 8999999999
Q ss_pred HHHHH
Q psy3301 545 KLATM 549 (608)
Q Consensus 545 ~l~~~ 549 (608)
.+++.
T Consensus 160 ~l~~~ 164 (165)
T cd01864 160 LMATE 164 (165)
T ss_pred HHHHh
Confidence 99874
No 219
>PRK04213 GTP-binding protein; Provisional
Probab=99.70 E-value=5.1e-17 Score=156.60 Aligned_cols=136 Identities=21% Similarity=0.243 Sum_probs=91.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCC-----------CCCChHHHHH
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSE-----------VDQTVDELTE 76 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G-----------~~~~~~~~~~ 76 (608)
...++|+++|.+|||||||+++|.+..+.....+..+..... +... .+.+||||| ++.+...+..
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~--~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNH--YDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVR 82 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceE--Eeec--ceEEEeCCccccccccCHHHHHHHHHHHHH
Confidence 457899999999999999999999988665433333222221 1112 589999999 3445544555
Q ss_pred HHH----hcCcEEEEEEcCChhhHHHHHHhH------------HHHHhhhccCCCCcEEEEEeCcCCCCCC---------
Q psy3301 77 EIQ----KAHVICLVYSVVDDASIDRLSSHW------------LPFLRNCLVDTCLPIVLVGNKVDLVDYS--------- 131 (608)
Q Consensus 77 ~~~----~ad~iilV~d~~~~~s~~~~~~~~------------~~~i~~~~~~~~~piilv~nK~Dl~~~~--------- 131 (608)
+++ .++++++|+|.++. ..+...| ...+. ..++|+++|+||+|+....
T Consensus 83 ~~~~~~~~~~~vi~v~d~~~~---~~~~~~~~~~~~~~~~~~l~~~~~----~~~~p~iiv~NK~Dl~~~~~~~~~~~~~ 155 (201)
T PRK04213 83 YIEDNADRILAAVLVVDGKSF---IEIIERWEGRGEIPIDVEMFDFLR----ELGIPPIVAVNKMDKIKNRDEVLDEIAE 155 (201)
T ss_pred HHHhhhhhheEEEEEEeCccc---cccccccccCCCcHHHHHHHHHHH----HcCCCeEEEEECccccCcHHHHHHHHHH
Confidence 554 34666777776543 2221122 22222 2478999999999985432
Q ss_pred --------------CcccCcccCcCHHHHHHHHHHHHh
Q psy3301 132 --------------TVESSAKTLKNISEMFYYAQKAVL 155 (608)
Q Consensus 132 --------------~~e~SAk~~~~i~~lf~~l~~~i~ 155 (608)
.+++||++| ||+++|.++.+.+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~ 192 (201)
T PRK04213 156 RLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLH 192 (201)
T ss_pred HhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhc
Confidence 157999999 99999999998764
No 220
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.70 E-value=5e-17 Score=151.02 Aligned_cols=138 Identities=18% Similarity=0.238 Sum_probs=107.0
Q ss_pred eEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEec-------ceEeCCcceeEeeeeccccc------c
Q psy3301 409 VYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTIN-------TTTVYGQEKYLVLKEILVRD------E 475 (608)
Q Consensus 409 ~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~-------~~~v~Gqe~~~~l~~~~~~~------v 475 (608)
.+|++++|++|||||||+++|+++.+...+.++.+. .+.....++ -.+++|+++|..+++.++++ +
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIED-SYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccc-eEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 489999999999999999999999988777666543 222222333 34559999998888877776 7
Q ss_pred cccCCCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHH
Q psy3301 476 QLPVLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFV 544 (608)
Q Consensus 476 ~d~~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~ 544 (608)
|| +++.. ..+. +.....++|+++||||+|+...+++..+++.++++.++.+ ++++| ++.|++++|.
T Consensus 81 ~d--~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~l~~ 157 (164)
T cd04145 81 FS--VTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIP-YIETSAKDRLNVDKAFH 157 (164)
T ss_pred EE--CCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCc-EEEeeCCCCCCHHHHHH
Confidence 88 66654 2222 2233568999999999999877777777899999998875 89999 8999999999
Q ss_pred HHHHHH
Q psy3301 545 KLATMA 550 (608)
Q Consensus 545 ~l~~~a 550 (608)
.|++.+
T Consensus 158 ~l~~~~ 163 (164)
T cd04145 158 DLVRVI 163 (164)
T ss_pred HHHHhh
Confidence 998754
No 221
>PRK11058 GTPase HflX; Provisional
Probab=99.69 E-value=1.9e-16 Score=167.93 Aligned_cols=143 Identities=18% Similarity=0.144 Sum_probs=102.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCC-cCCCCCcceEecCccCC-CceeEEEEeCCCCCCC--hHHH------HHHHHh
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPE-LVPSKAEEITIPPDVTP-EMVPTHIVDYSEVDQT--VDEL------TEEIQK 80 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~-~~~~~~~~~~i~~~~~~-~~~~~~i~Dt~G~~~~--~~~~------~~~~~~ 80 (608)
.+|+|+|.+|||||||+|+|++..+.. +.+.+ +.......+.. ...++.+|||+|..+. ...+ ...++.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~t-Tld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFA-TLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCC-CcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 589999999999999999999877543 22222 22221112222 2236889999997432 2222 344688
Q ss_pred cCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCC-------------CcccCcccCcCHHHHH
Q psy3301 81 AHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYS-------------TVESSAKTLKNISEMF 147 (608)
Q Consensus 81 ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-------------~~e~SAk~~~~i~~lf 147 (608)
||++++|+|++++.+++.+. .|...+.. ....++|+++|+||+|+.... .+++||++|.|+++++
T Consensus 277 ADlIL~VvDaS~~~~~e~l~-~v~~iL~e-l~~~~~pvIiV~NKiDL~~~~~~~~~~~~~~~~~~v~ISAktG~GIdeL~ 354 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIE-AVNTVLEE-IDAHEIPTLLVMNKIDMLDDFEPRIDRDEENKPIRVWLSAQTGAGIPLLF 354 (426)
T ss_pred CCEEEEEEeCCCccHHHHHH-HHHHHHHH-hccCCCCEEEEEEcccCCCchhHHHHHHhcCCCceEEEeCCCCCCHHHHH
Confidence 99999999999998888775 45555543 223478999999999996431 1679999999999999
Q ss_pred HHHHHHHhC
Q psy3301 148 YYAQKAVLH 156 (608)
Q Consensus 148 ~~l~~~i~~ 156 (608)
+++.+.+..
T Consensus 355 e~I~~~l~~ 363 (426)
T PRK11058 355 QALTERLSG 363 (426)
T ss_pred HHHHHHhhh
Confidence 999988753
No 222
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.69 E-value=3.7e-17 Score=152.20 Aligned_cols=140 Identities=22% Similarity=0.264 Sum_probs=107.9
Q ss_pred ceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceE-------ecceEeCCcceeEeeeeccccc------
Q psy3301 408 NVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYT-------INTTTVYGQEKYLVLKEILVRD------ 474 (608)
Q Consensus 408 ~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~-------i~~~~v~Gqe~~~~l~~~~~~~------ 474 (608)
+.+||+|+|++|||||||+++++++.+...+.++.+.+.....+. +.-.+++|+++|..+++.+++.
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 458999999999999999999999999888777776522222222 2333448999888887776665
Q ss_pred ccccCCCCcc--cccccc------cCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHH
Q psy3301 475 EQLPVLLPVD--VDCDKY------FSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFV 544 (608)
Q Consensus 475 v~d~~l~~~~--~~~~~~------~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~ 544 (608)
+|| +++.+ ..+.+| ....++|+++||||+|+...+++..++...++++++++ ++++| ++.|++++|.
T Consensus 82 v~d--~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~l~~ 158 (165)
T cd01868 82 VYD--ITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLS-FIETSALDGTNVEEAFK 158 (165)
T ss_pred EEE--CcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHH
Confidence 788 66544 333322 22346999999999999887877788899999998875 89999 8999999999
Q ss_pred HHHHHH
Q psy3301 545 KLATMA 550 (608)
Q Consensus 545 ~l~~~a 550 (608)
.|+..+
T Consensus 159 ~l~~~i 164 (165)
T cd01868 159 QLLTEI 164 (165)
T ss_pred HHHHHh
Confidence 998765
No 223
>PTZ00099 rab6; Provisional
Probab=99.69 E-value=1.6e-16 Score=149.21 Aligned_cols=122 Identities=21% Similarity=0.239 Sum_probs=100.3
Q ss_pred CCCCCcCCCCCcceEe--cCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhh
Q psy3301 33 EEFPELVPSKAEEITI--PPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNC 110 (608)
Q Consensus 33 ~~~~~~~~~~~~~~~i--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~ 110 (608)
+.|.+++.++...... ...+....+.+.||||+|++++...+..+++.||++|+|||+++++||+.+. .|+..+..
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~-~w~~~i~~- 80 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTT-KWIQDILN- 80 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHH-HHHHHHHH-
Confidence 4566666666543332 3345667799999999999999999999999999999999999999999997 79888764
Q ss_pred ccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHHHHHHHhC
Q psy3301 111 LVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYYAQKAVLH 156 (608)
Q Consensus 111 ~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~l~~~i~~ 156 (608)
....++|++|||||+|+..... ++|||++|.||+++|+++.+.+..
T Consensus 81 ~~~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 81 ERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred hcCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 2346789999999999964321 899999999999999999998854
No 224
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.69 E-value=9.6e-17 Score=148.32 Aligned_cols=131 Identities=17% Similarity=0.125 Sum_probs=94.4
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecceE-------eCCcceeEeeeeccccc------cc
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINTTT-------VYGQEKYLVLKEILVRD------EQ 476 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~~~-------v~Gqe~~~~l~~~~~~~------v~ 476 (608)
+||+|+|++|||||||+++|+.+.|...+.++. . .|...+.+++.. ++||+.+. +++. ||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~-~-~~~~~i~~~~~~~~l~i~D~~g~~~~~-----~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEG-G-RFKKEVLVDGQSHLLLIRDEGGAPDAQ-----FASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCc-c-ceEEEEEECCEEEEEEEEECCCCCchh-----HHhcCCEEEEEE
Confidence 489999999999999999999999987765432 2 222333444322 25665421 1222 88
Q ss_pred ccCCCCcc--ccccc-------ccCCCCCcEEEEEeCCCCC--cchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHH
Q psy3301 477 LPVLLPVD--VDCDK-------YFSTSKIPVMLVAGKSDMP--RARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVF 543 (608)
Q Consensus 477 d~~l~~~~--~~~~~-------~~~~~~~p~ilVgnK~DL~--~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F 543 (608)
| +++.+ +.+.. +...+++|+++||||+||. ..+++..+++++++++++..+++++| ++.||+++|
T Consensus 74 d--~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f 151 (158)
T cd04103 74 S--LENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVF 151 (158)
T ss_pred E--CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHH
Confidence 8 88877 44442 2223679999999999996 35778888899999987533499999 899999999
Q ss_pred HHHHHH
Q psy3301 544 VKLATM 549 (608)
Q Consensus 544 ~~l~~~ 549 (608)
..+++.
T Consensus 152 ~~~~~~ 157 (158)
T cd04103 152 QEAAQK 157 (158)
T ss_pred HHHHhh
Confidence 999864
No 225
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.69 E-value=2.8e-17 Score=152.41 Aligned_cols=137 Identities=17% Similarity=0.151 Sum_probs=107.1
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCc---------eEecceEeCCcceeEeeeeccccc------
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPP---------YTINTTTVYGQEKYLVLKEILVRD------ 474 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~---------~~i~~~~v~Gqe~~~~l~~~~~~~------ 474 (608)
+||+++|++|||||||+++|+++.|...+.+|++.+..... +.+.-.+++|+++|..+++.++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 48999999999999999999999998888777765221122 223334558999999888887777
Q ss_pred ccccCCCCcc--ccccccc-----CCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHHH
Q psy3301 475 EQLPVLLPVD--VDCDKYF-----STSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFVK 545 (608)
Q Consensus 475 v~d~~l~~~~--~~~~~~~-----~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~~ 545 (608)
+|| +++.+ +.+..|. ...++|+++||||+|+..++++..+++.++++.++++ ++++| ++.|++++|..
T Consensus 81 v~d--~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~l~~~ 157 (162)
T cd04106 81 VFS--TTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLP-LFRTSVKDDFNVTELFEY 157 (162)
T ss_pred EEE--CCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCe-EEEEECCCCCCHHHHHHH
Confidence 788 76655 3333221 2368999999999999887777778899999999985 88999 89999999999
Q ss_pred HHHH
Q psy3301 546 LATM 549 (608)
Q Consensus 546 l~~~ 549 (608)
|+..
T Consensus 158 l~~~ 161 (162)
T cd04106 158 LAEK 161 (162)
T ss_pred HHHh
Confidence 9864
No 226
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.69 E-value=4.4e-17 Score=151.79 Aligned_cols=139 Identities=16% Similarity=0.141 Sum_probs=105.9
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCc-------eEecceEeCCcceeEeeeeccccc------cc
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPP-------YTINTTTVYGQEKYLVLKEILVRD------EQ 476 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~-------~~i~~~~v~Gqe~~~~l~~~~~~~------v~ 476 (608)
+||+|+|++|||||||+++|+++.|...+.++.+.+..... +.++-.+.+|+++|..++..++++ +|
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999999998888777665111122 233334448998888777777666 78
Q ss_pred ccCCCCcc--cccc-------cccC----CCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHH
Q psy3301 477 LPVLLPVD--VDCD-------KYFS----TSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDRE 541 (608)
Q Consensus 477 d~~l~~~~--~~~~-------~~~~----~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e 541 (608)
| +++.+ .... ++.. ..++|+++||||+|+.+.+.+..+++..++++++++ ++++| ++.|+++
T Consensus 81 D--~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~ 157 (168)
T cd04119 81 D--VTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFK-YFETSACTGEGVNE 157 (168)
T ss_pred E--CCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCe-EEEEECCCCCCHHH
Confidence 8 77654 2222 2222 257999999999999866667778888999999875 89999 8999999
Q ss_pred HHHHHHHHHc
Q psy3301 542 VFVKLATMAA 551 (608)
Q Consensus 542 ~F~~l~~~a~ 551 (608)
+|..|++.++
T Consensus 158 l~~~l~~~l~ 167 (168)
T cd04119 158 MFQTLFSSIV 167 (168)
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 227
>PLN03110 Rab GTPase; Provisional
Probab=99.68 E-value=5.1e-17 Score=158.24 Aligned_cols=145 Identities=17% Similarity=0.185 Sum_probs=114.0
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecc-------eEeCCcceeEeeeeccccc-----
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINT-------TTVYGQEKYLVLKEILVRD----- 474 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~-------~~v~Gqe~~~~l~~~~~~~----- 474 (608)
.+.+|++++|++|||||||+++|+++.+...+.+|++.+.....+.+++ .+.+|+++|..+++.+++.
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~i 89 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEE
Confidence 3579999999999999999999999999877777776633223333333 3448999998888887777
Q ss_pred -ccccCCCCcc--ccccccc------CCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHH
Q psy3301 475 -EQLPVLLPVD--VDCDKYF------STSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVF 543 (608)
Q Consensus 475 -v~d~~l~~~~--~~~~~~~------~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F 543 (608)
+|| +++.+ +.+..|+ ...++|+++||||+||.+.+++..+++..+++.++++ ++++| ++.|++++|
T Consensus 90 lv~d--~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~-~~e~SA~~g~~v~~lf 166 (216)
T PLN03110 90 LVYD--ITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLS-FLETSALEATNVEKAF 166 (216)
T ss_pred EEEE--CCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCE-EEEEeCCCCCCHHHHH
Confidence 788 66654 3333222 2468999999999999888888888999999999886 89999 899999999
Q ss_pred HHHHHHHcCCC
Q psy3301 544 VKLATMAAFPR 554 (608)
Q Consensus 544 ~~l~~~a~~p~ 554 (608)
..|+..+....
T Consensus 167 ~~l~~~i~~~~ 177 (216)
T PLN03110 167 QTILLEIYHII 177 (216)
T ss_pred HHHHHHHHHHh
Confidence 99998876643
No 228
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.68 E-value=1.7e-16 Score=149.12 Aligned_cols=137 Identities=22% Similarity=0.204 Sum_probs=97.0
Q ss_pred EEcCCCCCHHHHHHHHHcCCCC-CcCCCCCcceEecCccCCC-ceeEEEEeCCCCCCC-------hHHHHHHHHhcCcEE
Q psy3301 15 LLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPE-MVPTHIVDYSEVDQT-------VDELTEEIQKAHVIC 85 (608)
Q Consensus 15 lvG~~~vGKTSLi~~l~~~~~~-~~~~~~~~~~~i~~~~~~~-~~~~~i~Dt~G~~~~-------~~~~~~~~~~ad~ii 85 (608)
++|++|||||||+++|.+.... .+++.++ .......+... +..+.+|||||.... .......++.+|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTT-LEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCcee-ecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 5899999999999999998752 2232221 11111123334 678999999996321 112345678899999
Q ss_pred EEEEcCCh------hhHHHHHHhHHHHHhhhcc------CCCCcEEEEEeCcCCCCCCC-----------------cccC
Q psy3301 86 LVYSVVDD------ASIDRLSSHWLPFLRNCLV------DTCLPIVLVGNKVDLVDYST-----------------VESS 136 (608)
Q Consensus 86 lV~d~~~~------~s~~~~~~~~~~~i~~~~~------~~~~piilv~nK~Dl~~~~~-----------------~e~S 136 (608)
+|+|+++. .+++... .|...+..... ..+.|+++|+||+|+..... +++|
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYE-ILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPIS 158 (176)
T ss_pred EEEeccCCccccccCHHHHHH-HHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEe
Confidence 99999988 5777766 56666653211 14789999999999864322 8999
Q ss_pred cccCcCHHHHHHHHHHH
Q psy3301 137 AKTLKNISEMFYYAQKA 153 (608)
Q Consensus 137 Ak~~~~i~~lf~~l~~~ 153 (608)
|+++.|++++++++.+.
T Consensus 159 a~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 159 AKTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhhcCHHHHHHHHHhh
Confidence 99999999999988653
No 229
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.68 E-value=5.8e-17 Score=154.50 Aligned_cols=142 Identities=18% Similarity=0.202 Sum_probs=109.9
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEec-------ceEeCCcceeEeeeeccccc------cc
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTIN-------TTTVYGQEKYLVLKEILVRD------EQ 476 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~-------~~~v~Gqe~~~~l~~~~~~~------v~ 476 (608)
+||+|+|++|||||||+++|+++.|...+.+|.+.+.....+.++ -.+++|+++|..++..++++ +|
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 589999999999999999999999987777777652211233332 23448988888777777766 78
Q ss_pred ccCCCCcc--cccccc------cCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHHHH
Q psy3301 477 LPVLLPVD--VDCDKY------FSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFVKL 546 (608)
Q Consensus 477 d~~l~~~~--~~~~~~------~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~~l 546 (608)
| +++.+ ..+.+| +...++|+++||||+|+.+.+++...++..+++..+++ ++++| ++.|++++|..|
T Consensus 81 d--~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~evSa~~~~~i~~~f~~l 157 (188)
T cd04125 81 D--VTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIP-FFETSAKQSINVEEAFILL 157 (188)
T ss_pred E--CcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCe-EEEEeCCCCCCHHHHHHHH
Confidence 8 77766 333322 22456899999999999887878788899999999885 89999 899999999999
Q ss_pred HHHHcCCC
Q psy3301 547 ATMAAFPR 554 (608)
Q Consensus 547 ~~~a~~p~ 554 (608)
++.+....
T Consensus 158 ~~~~~~~~ 165 (188)
T cd04125 158 VKLIIKRL 165 (188)
T ss_pred HHHHHHHh
Confidence 99886543
No 230
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.68 E-value=4.6e-16 Score=149.79 Aligned_cols=119 Identities=21% Similarity=0.297 Sum_probs=90.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceE-ecCccCCCceeEEEEeCCCCCCChHHHHHHHHhc-CcEEEEEE
Q psy3301 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEIT-IPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKA-HVICLVYS 89 (608)
Q Consensus 12 kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a-d~iilV~d 89 (608)
+|+++|++|||||||+++|..+.+...+++...... ........+..+.+||+||++++...+..+++.+ +++|+|+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 689999999999999999999988766544322111 1111113467899999999999998888999999 99999999
Q ss_pred cCCh-hhHHHHHHhHHHHHhhh-ccCCCCcEEEEEeCcCCCCC
Q psy3301 90 VVDD-ASIDRLSSHWLPFLRNC-LVDTCLPIVLVGNKVDLVDY 130 (608)
Q Consensus 90 ~~~~-~s~~~~~~~~~~~i~~~-~~~~~~piilv~nK~Dl~~~ 130 (608)
+++. .++..+...|...+... ....++|++||+||+|+...
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 9998 77888775665555432 22358999999999998654
No 231
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.68 E-value=7.4e-17 Score=150.80 Aligned_cols=141 Identities=20% Similarity=0.232 Sum_probs=108.2
Q ss_pred ceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEec-------ceEeCCcceeEeeeeccccc------
Q psy3301 408 NVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTIN-------TTTVYGQEKYLVLKEILVRD------ 474 (608)
Q Consensus 408 ~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~-------~~~v~Gqe~~~~l~~~~~~~------ 474 (608)
..+||+|+|++|||||||+++++++.+...+.++.+.+.....+.++ -.+.+|+++|..+...+++.
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~ 82 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 82 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 46999999999999999999999999988877666552211222233 23348988888777666655
Q ss_pred ccccCCCCcc--cccccc------cCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHH
Q psy3301 475 EQLPVLLPVD--VDCDKY------FSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFV 544 (608)
Q Consensus 475 v~d~~l~~~~--~~~~~~------~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~ 544 (608)
+|| +++.. ..+.+| ...+++|+++||||.|+.+.+.+..+++..++++++++ ++++| .+.|++++|.
T Consensus 83 v~d--~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~~i~~~~~ 159 (168)
T cd01866 83 VYD--ITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLI-FMETSAKTASNVEEAFI 159 (168)
T ss_pred EEE--CCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCE-EEEEeCCCCCCHHHHHH
Confidence 788 66544 333322 22478999999999999877777788899999999986 89999 8999999999
Q ss_pred HHHHHHc
Q psy3301 545 KLATMAA 551 (608)
Q Consensus 545 ~l~~~a~ 551 (608)
.+++.+.
T Consensus 160 ~~~~~~~ 166 (168)
T cd01866 160 NTAKEIY 166 (168)
T ss_pred HHHHHHH
Confidence 9998774
No 232
>KOG0070|consensus
Probab=99.68 E-value=1.6e-16 Score=143.51 Aligned_cols=146 Identities=17% Similarity=0.185 Sum_probs=122.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEE
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICL 86 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iil 86 (608)
..+.++|+++|-.++||||++++|-.+++...+|+..- .. ..+...++.+.+||..|+++++..+..|+++.+++|+
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGf-nV--E~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIf 90 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGF-NV--ETVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIF 90 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccCCCcccc-ce--eEEEEcceEEEEEecCCCcccccchhhhccCCcEEEE
Confidence 45689999999999999999999999988775443321 11 1234458899999999999999999999999999999
Q ss_pred EEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC--------------------cccCcccCcCHHHH
Q psy3301 87 VYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST--------------------VESSAKTLKNISEM 146 (608)
Q Consensus 87 V~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------------------~e~SAk~~~~i~~l 146 (608)
|.|.+|++.+...+..+...+.. ....+.|+++.+||.|++..-. -.|+|.+|+|+.|.
T Consensus 91 VvDS~Dr~Ri~eak~eL~~~l~~-~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~eg 169 (181)
T KOG0070|consen 91 VVDSSDRERIEEAKEELHRMLAE-PELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEG 169 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHHcC-cccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccHHHH
Confidence 99999999999999877777774 3457899999999999886543 67999999999999
Q ss_pred HHHHHHHHhC
Q psy3301 147 FYYAQKAVLH 156 (608)
Q Consensus 147 f~~l~~~i~~ 156 (608)
++++.+.+..
T Consensus 170 l~wl~~~~~~ 179 (181)
T KOG0070|consen 170 LDWLSNNLKK 179 (181)
T ss_pred HHHHHHHHhc
Confidence 9999988753
No 233
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.68 E-value=8.4e-17 Score=150.75 Aligned_cols=139 Identities=17% Similarity=0.196 Sum_probs=106.3
Q ss_pred eEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCce-------EecceEeCCcceeE-eeeeccccc------
Q psy3301 409 VYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPY-------TINTTTVYGQEKYL-VLKEILVRD------ 474 (608)
Q Consensus 409 ~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~-------~i~~~~v~Gqe~~~-~l~~~~~~~------ 474 (608)
.+||+++|++|||||||+++|+.+.+...+.++.+.+.+...+ .++-.+++|+++|. .+.+.++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 4899999999999999999999999987777666542222222 23334458998886 466666655
Q ss_pred ccccCCCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--c---CCCHH
Q psy3301 475 EQLPVLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--A---ANNDR 540 (608)
Q Consensus 475 v~d~~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~---~~~v~ 540 (608)
||| +++.+ ..+. ++....++|+++||||+|+...+++...++.++++.++++ ++++| + +.+++
T Consensus 82 v~d--~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~~~~~i~ 158 (170)
T cd04115 82 VYD--VTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMP-LFETSAKDPSENDHVE 158 (170)
T ss_pred EEE--CCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCc-EEEEeccCCcCCCCHH
Confidence 788 76655 2222 2233468999999999999988888888999999999876 89999 5 88999
Q ss_pred HHHHHHHHHH
Q psy3301 541 EVFVKLATMA 550 (608)
Q Consensus 541 e~F~~l~~~a 550 (608)
++|..+++.+
T Consensus 159 ~~f~~l~~~~ 168 (170)
T cd04115 159 AIFMTLAHKL 168 (170)
T ss_pred HHHHHHHHHh
Confidence 9999999765
No 234
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.68 E-value=9.6e-17 Score=150.81 Aligned_cols=137 Identities=17% Similarity=0.216 Sum_probs=106.3
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecc-------eEeCCcceeEeeeeccccc------cc
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINT-------TTVYGQEKYLVLKEILVRD------EQ 476 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~-------~~v~Gqe~~~~l~~~~~~~------v~ 476 (608)
+||+++|++|||||||+++|+++.|...+.+|... .+...+.+++ .+.+|+++|..+++.++++ +|
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFD-NFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-eeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 58999999999999999999999999888766532 3333333443 3449999999998887776 78
Q ss_pred ccCCCCcc--cccc-ccc-----CCCCCcEEEEEeCCCCCc------------chhcccccHHHHHHHcCCCCceEEc--
Q psy3301 477 LPVLLPVD--VDCD-KYF-----STSKIPVMLVAGKSDMPR------------ARQDYLMQPDIFCETHKLSPAHSFS-- 534 (608)
Q Consensus 477 d~~l~~~~--~~~~-~~~-----~~~~~p~ilVgnK~DL~~------------~~~~~~~~~~~~~~~~~~~~~~~~S-- 534 (608)
| +++.+ +.+. .|. ..+++|+++||||+||.. .+++..+++.++++++++.+++++|
T Consensus 80 d--~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~ 157 (173)
T cd04130 80 S--VVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSAL 157 (173)
T ss_pred E--CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCC
Confidence 8 77765 3332 111 135799999999999963 4566778899999999986699999
Q ss_pred cCCCHHHHHHHHHHH
Q psy3301 535 AANNDREVFVKLATM 549 (608)
Q Consensus 535 ~~~~v~e~F~~l~~~ 549 (608)
++.|++++|..++-.
T Consensus 158 ~~~~v~~lf~~~~~~ 172 (173)
T cd04130 158 TQKNLKEVFDTAILA 172 (173)
T ss_pred CCCCHHHHHHHHHhh
Confidence 899999999988753
No 235
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.68 E-value=8.1e-16 Score=143.81 Aligned_cols=137 Identities=23% Similarity=0.297 Sum_probs=98.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHcCCCCCc--CCCCCcceEecCccCCCceeEEEEeCCCCCCChH-----------HHHH
Q psy3301 10 NVRILLLGDRHVGKTSLILSLVSEEFPEL--VPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVD-----------ELTE 76 (608)
Q Consensus 10 ~~kI~lvG~~~vGKTSLi~~l~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~~~ 76 (608)
.++|+++|++|+|||||+++|++..+... .+.+ +.......+...+..+.+|||||..+... ....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~ 80 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGT-TRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLK 80 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCC-ccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHH
Confidence 57999999999999999999999764322 2222 22222223334456789999999754311 1234
Q ss_pred HHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCC--C--------------------cc
Q psy3301 77 EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYS--T--------------------VE 134 (608)
Q Consensus 77 ~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~--~--------------------~e 134 (608)
.+..+|++++|+|++++.+..... +...+. ..+.|+++|+||+|+.... . ++
T Consensus 81 ~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~----~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (174)
T cd01895 81 AIERADVVLLVIDATEGITEQDLR--IAGLIL----EEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVF 154 (174)
T ss_pred HHhhcCeEEEEEeCCCCcchhHHH--HHHHHH----hcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEE
Confidence 567999999999999987765543 333333 2368999999999997652 1 88
Q ss_pred cCcccCcCHHHHHHHHHHH
Q psy3301 135 SSAKTLKNISEMFYYAQKA 153 (608)
Q Consensus 135 ~SAk~~~~i~~lf~~l~~~ 153 (608)
+||+++.|++++++.+.+.
T Consensus 155 ~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 155 ISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred EeccCCCCHHHHHHHHHHh
Confidence 9999999999999998764
No 236
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.68 E-value=5.1e-16 Score=148.76 Aligned_cols=113 Identities=19% Similarity=0.173 Sum_probs=80.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHc--CCCCCcCC--C------------CCcceEecCccCCCceeEEEEeCCCCCCChHHH
Q psy3301 11 VRILLLGDRHVGKTSLILSLVS--EEFPELVP--S------------KAEEITIPPDVTPEMVPTHIVDYSEVDQTVDEL 74 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~--~~~~~~~~--~------------~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~ 74 (608)
.+|+++|++|||||||+++|+. +.+..... + ..+.......+...++.+.+|||||++++...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 5899999999999999999997 45543321 0 001111112234557889999999999999999
Q ss_pred HHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCC
Q psy3301 75 TEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVD 129 (608)
Q Consensus 75 ~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 129 (608)
..+++.+|++++|||+++.. +.... .|+..+. ..++|+++|+||+|+..
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~-~~~~~~~----~~~~p~iiv~NK~Dl~~ 131 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTR-FVLKKAL----ELGLKPIVVINKIDRPD 131 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHH-HHHHHHH----HcCCCEEEEEECCCCCC
Confidence 99999999999999998743 22222 3333333 24789999999999853
No 237
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.68 E-value=1.1e-16 Score=158.37 Aligned_cols=142 Identities=18% Similarity=0.224 Sum_probs=107.5
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEec-------ceEeCCcceeEeeeeccccc------cc
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTIN-------TTTVYGQEKYLVLKEILVRD------EQ 476 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~-------~~~v~Gqe~~~~l~~~~~~~------v~ 476 (608)
+||+|+|++|||||||+++|+++.|...|.+|++. .+...+.++ -.+++|++.|..++..++.. ||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d-~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIED-FHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhH-hEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999998888766653 222333333 34459999998888776655 78
Q ss_pred ccCCCCcc--ccccc---------c------cCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCC
Q psy3301 477 LPVLLPVD--VDCDK---------Y------FSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AAN 537 (608)
Q Consensus 477 d~~l~~~~--~~~~~---------~------~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~ 537 (608)
| +++.+ +.+.. + ....++|+|+||||+||.+.+++..++..+++......+++++| ++.
T Consensus 80 d--v~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~ 157 (247)
T cd04143 80 S--LDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNS 157 (247)
T ss_pred e--CCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCC
Confidence 8 77765 22221 1 12357999999999999876667667777776644222389999 899
Q ss_pred CHHHHHHHHHHHHcCCC
Q psy3301 538 NDREVFVKLATMAAFPR 554 (608)
Q Consensus 538 ~v~e~F~~l~~~a~~p~ 554 (608)
|++++|..|++++..|+
T Consensus 158 gI~elf~~L~~~~~~p~ 174 (247)
T cd04143 158 NLDEMFRALFSLAKLPN 174 (247)
T ss_pred CHHHHHHHHHHHhcccc
Confidence 99999999999998887
No 238
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.68 E-value=5e-16 Score=159.64 Aligned_cols=143 Identities=17% Similarity=0.144 Sum_probs=103.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCC-cCCCCCcceEecCccCCCceeEEEEeCCCCCCC-------hHHHHHHHHhcC
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPE-LVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQT-------VDELTEEIQKAH 82 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~~~ad 82 (608)
-.|+|+|.+|||||||+++|.+..... +++.++...++..........+.|||+||.... .......+.+++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad 237 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 237 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhC
Confidence 579999999999999999999876432 244433222222111122378999999997432 122344566799
Q ss_pred cEEEEEEcCCh---hhHHHHHHhHHHHHhhh-ccCCCCcEEEEEeCcCCCCCCC----------------cccCcccCcC
Q psy3301 83 VICLVYSVVDD---ASIDRLSSHWLPFLRNC-LVDTCLPIVLVGNKVDLVDYST----------------VESSAKTLKN 142 (608)
Q Consensus 83 ~iilV~d~~~~---~s~~~~~~~~~~~i~~~-~~~~~~piilv~nK~Dl~~~~~----------------~e~SAk~~~~ 142 (608)
++++|+|+++. ++++.+. .|...+... ....+.|++||+||+|+..... +++||+++.|
T Consensus 238 ~ll~VvD~s~~~~~~~~e~l~-~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~vi~iSAktg~G 316 (329)
T TIGR02729 238 VLLHLIDISPLDGRDPIEDYE-IIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALGKPVFPISALTGEG 316 (329)
T ss_pred EEEEEEcCccccccCHHHHHH-HHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcCCcEEEEEccCCcC
Confidence 99999999987 6777776 777777643 1234789999999999965432 8899999999
Q ss_pred HHHHHHHHHHHH
Q psy3301 143 ISEMFYYAQKAV 154 (608)
Q Consensus 143 i~~lf~~l~~~i 154 (608)
|+++++++.+.+
T Consensus 317 I~eL~~~I~~~l 328 (329)
T TIGR02729 317 LDELLYALAELL 328 (329)
T ss_pred HHHHHHHHHHHh
Confidence 999999988754
No 239
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.67 E-value=6.6e-17 Score=153.90 Aligned_cols=142 Identities=20% Similarity=0.159 Sum_probs=109.1
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceE--------ecceEeCCcceeEeeeeccccc------c
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYT--------INTTTVYGQEKYLVLKEILVRD------E 475 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~--------i~~~~v~Gqe~~~~l~~~~~~~------v 475 (608)
+||+|+|++|||||||+++|+++.|...+.++++. .|...+. +.-.+++|+++|..++..++++ +
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~-~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFE-NYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeee-eeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 48999999999999999999999998888776655 2222222 2233448999998888877766 7
Q ss_pred cccCCCCcc--cccc-ccc-----CCCCCcEEEEEeCCCCCcc----hhcccccHHHHHHHcCCCCceEEc--cCCCHHH
Q psy3301 476 QLPVLLPVD--VDCD-KYF-----STSKIPVMLVAGKSDMPRA----RQDYLMQPDIFCETHKLSPAHSFS--AANNDRE 541 (608)
Q Consensus 476 ~d~~l~~~~--~~~~-~~~-----~~~~~p~ilVgnK~DL~~~----~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e 541 (608)
|| +++.+ +.+. .|. ..+++|+++||||+||... +++...++.++++.+++.+++++| ++.|+++
T Consensus 80 ~d--~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 157 (187)
T cd04132 80 YA--VDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEE 157 (187)
T ss_pred EE--CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHH
Confidence 88 77755 2221 121 1468999999999999653 345677899999999985589999 8999999
Q ss_pred HHHHHHHHHcCCC
Q psy3301 542 VFVKLATMAAFPR 554 (608)
Q Consensus 542 ~F~~l~~~a~~p~ 554 (608)
+|..+++.++.-+
T Consensus 158 ~f~~l~~~~~~~~ 170 (187)
T cd04132 158 VFDTAIEEALKKE 170 (187)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999987654
No 240
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.67 E-value=1.3e-16 Score=148.74 Aligned_cols=138 Identities=18% Similarity=0.162 Sum_probs=102.7
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCc-------eEecceEeCCcceeEeeeeccccc------cc
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPP-------YTINTTTVYGQEKYLVLKEILVRD------EQ 476 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~-------~~i~~~~v~Gqe~~~~l~~~~~~~------v~ 476 (608)
+||+|+|++|||||||+++|+.+.+...+.+|.+.+..... +.+.-.+++|+++|..+++.+++. ||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888777765222222 223334459999999988877776 78
Q ss_pred ccCCCCcc--ccccccc-----CCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHHHHH
Q psy3301 477 LPVLLPVD--VDCDKYF-----STSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFVKLA 547 (608)
Q Consensus 477 d~~l~~~~--~~~~~~~-----~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~~l~ 547 (608)
| +++.+ ..+..|+ ...++|+++||||+|+.+ +++ ..+..++++..+++ ++++| ++.|++++|..|+
T Consensus 81 d--~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~-~~~-~~~~~~~~~~~~~~-~~e~Sa~~~~~v~~~f~~l~ 155 (166)
T cd00877 81 D--VTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKD-RKV-KAKQITFHRKKNLQ-YYEISAKSNYNFEKPFLWLA 155 (166)
T ss_pred E--CCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhccc-ccC-CHHHHHHHHHcCCE-EEEEeCCCCCChHHHHHHHH
Confidence 8 77655 3333111 123899999999999973 333 34456777776665 99999 8999999999999
Q ss_pred HHHcC
Q psy3301 548 TMAAF 552 (608)
Q Consensus 548 ~~a~~ 552 (608)
+.+..
T Consensus 156 ~~~~~ 160 (166)
T cd00877 156 RKLLG 160 (166)
T ss_pred HHHHh
Confidence 88854
No 241
>KOG3883|consensus
Probab=99.67 E-value=1.1e-15 Score=132.00 Aligned_cols=154 Identities=20% Similarity=0.237 Sum_probs=121.5
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHHcCCCCCc--CCCCCcceEecCccCC--CceeEEEEeCCCCCCC-hHHHHHHHHh
Q psy3301 6 SLRRNVRILLLGDRHVGKTSLILSLVSEEFPEL--VPSKAEEITIPPDVTP--EMVPTHIVDYSEVDQT-VDELTEEIQK 80 (608)
Q Consensus 6 ~~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~--~~~~~~~~~i~~~~~~--~~~~~~i~Dt~G~~~~-~~~~~~~~~~ 80 (608)
.+-+..||++||-.+||||+++.+|+.++..++ ..++.+.++...--++ ..-.+.|+||.|.... .++-..++.-
T Consensus 5 kmGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~ 84 (198)
T KOG3883|consen 5 KMGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQF 84 (198)
T ss_pred hhCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhcc
Confidence 455678999999999999999999998886655 4444444333222222 2345899999998777 4445678889
Q ss_pred cCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCH
Q psy3301 81 AHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNI 143 (608)
Q Consensus 81 ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i 143 (608)
+|++++|||..|++||+.+. .+...|........+||++++||+|+.+... ++++|.....+
T Consensus 85 aDafVLVYs~~d~eSf~rv~-llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL 163 (198)
T KOG3883|consen 85 ADAFVLVYSPMDPESFQRVE-LLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSL 163 (198)
T ss_pred CceEEEEecCCCHHHHHHHH-HHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhh
Confidence 99999999999999999987 5666666545667899999999999976544 99999999999
Q ss_pred HHHHHHHHHHHhCCCCC
Q psy3301 144 SEMFYYAQKAVLHPMAP 160 (608)
Q Consensus 144 ~~lf~~l~~~i~~~~~~ 160 (608)
-|.|.++...+.+|...
T Consensus 164 ~epf~~l~~rl~~pqsk 180 (198)
T KOG3883|consen 164 YEPFTYLASRLHQPQSK 180 (198)
T ss_pred hhHHHHHHHhccCCccc
Confidence 99999999998887654
No 242
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.67 E-value=3.8e-16 Score=144.00 Aligned_cols=132 Identities=19% Similarity=0.083 Sum_probs=93.9
Q ss_pred EEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChH------HHHHHHH--hcCcEEE
Q psy3301 15 LLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVD------ELTEEIQ--KAHVICL 86 (608)
Q Consensus 15 lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~------~~~~~~~--~ad~iil 86 (608)
|+|++|||||||++++.+..+.....+..+.......+...+..+.+|||||++.+.. ....++. .+|++++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN 80 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence 5899999999999999998644332222222111112233356899999999877653 2455564 8999999
Q ss_pred EEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC----------------cccCcccCcCHHHHHHHH
Q psy3301 87 VYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST----------------VESSAKTLKNISEMFYYA 150 (608)
Q Consensus 87 V~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------------~e~SAk~~~~i~~lf~~l 150 (608)
|+|+++.++.. .|...+.. .++|+++|+||+|+..... +++||+++.|+.+++..+
T Consensus 81 v~d~~~~~~~~----~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l 152 (158)
T cd01879 81 VVDATNLERNL----YLTLQLLE----LGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKDAI 152 (158)
T ss_pred EeeCCcchhHH----HHHHHHHH----cCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHHHH
Confidence 99998865432 34333332 3689999999999975432 899999999999999998
Q ss_pred HHHH
Q psy3301 151 QKAV 154 (608)
Q Consensus 151 ~~~i 154 (608)
.+..
T Consensus 153 ~~~~ 156 (158)
T cd01879 153 AELA 156 (158)
T ss_pred HHHh
Confidence 7753
No 243
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.67 E-value=1.8e-16 Score=151.96 Aligned_cols=142 Identities=16% Similarity=0.101 Sum_probs=100.7
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecc-------eEeCCcceeEeee--------eccccc
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINT-------TTVYGQEKYLVLK--------EILVRD 474 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~-------~~v~Gqe~~~~l~--------~~~~~~ 474 (608)
+||+|+|++|||||||+++|+++.|...+.|+.+.+.+...+.+++ ++++|.++|.... ...+++
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999999999888877776533333333333 4446655442111 011222
Q ss_pred ------ccccCCCCcc--cccccc-------c--CCCCCcEEEEEeCCCCCcchhcccccHHHHHH-HcCCCCceEEc--
Q psy3301 475 ------EQLPVLLPVD--VDCDKY-------F--STSKIPVMLVAGKSDMPRARQDYLMQPDIFCE-THKLSPAHSFS-- 534 (608)
Q Consensus 475 ------v~d~~l~~~~--~~~~~~-------~--~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~-~~~~~~~~~~S-- 534 (608)
||| +++.+ +.+..+ . ...++|+++||||+||...+.+..++..++++ .++++ ++++|
T Consensus 81 ad~iilv~D--~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~e~Sak 157 (198)
T cd04142 81 SRAFILVYD--ICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCG-YLECSAK 157 (198)
T ss_pred CCEEEEEEE--CCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCc-EEEecCC
Confidence 788 77665 333311 1 24779999999999998777666666777765 55775 99999
Q ss_pred cCCCHHHHHHHHHHHHcCCC
Q psy3301 535 AANNDREVFVKLATMAAFPR 554 (608)
Q Consensus 535 ~~~~v~e~F~~l~~~a~~p~ 554 (608)
+|.|++++|..+++.++.+.
T Consensus 158 ~g~~v~~lf~~i~~~~~~~~ 177 (198)
T cd04142 158 YNWHILLLFKELLISATTRG 177 (198)
T ss_pred CCCCHHHHHHHHHHHhhccC
Confidence 89999999999999998775
No 244
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.67 E-value=7.5e-16 Score=146.49 Aligned_cols=137 Identities=18% Similarity=0.105 Sum_probs=103.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCC----------------cceEecCccCCCceeEEEEeCCCCCCChHHHH
Q psy3301 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKA----------------EEITIPPDVTPEMVPTHIVDYSEVDQTVDELT 75 (608)
Q Consensus 12 kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~----------------~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 75 (608)
+|+|+|++|+|||||+++|++........... +.......+...+..+.+|||||+..+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 58999999999999999999987665332111 11111112233467899999999998888888
Q ss_pred HHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCC------------------------
Q psy3301 76 EEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYS------------------------ 131 (608)
Q Consensus 76 ~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~------------------------ 131 (608)
.+++.+|++++|+|++++.+.... .++..+. ..+.|+++|+||+|+....
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~~----~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTR--EHLRIAR----EGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE 154 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHHH--HHHHHHH----HCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence 999999999999999887654433 2444443 2578999999999987521
Q ss_pred ------C---cccCcccCcCHHHHHHHHHHHH
Q psy3301 132 ------T---VESSAKTLKNISEMFYYAQKAV 154 (608)
Q Consensus 132 ------~---~e~SAk~~~~i~~lf~~l~~~i 154 (608)
. +++||++|.|+++++.++.+.+
T Consensus 155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred hcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 1 7899999999999999998876
No 245
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.66 E-value=2.2e-16 Score=147.56 Aligned_cols=139 Identities=19% Similarity=0.244 Sum_probs=108.5
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEe-------cceEeCCcceeEeeeeccccc------cc
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTI-------NTTTVYGQEKYLVLKEILVRD------EQ 476 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i-------~~~~v~Gqe~~~~l~~~~~~~------v~ 476 (608)
||++++|++|||||||+++|+++.|...+.++.+. .+...+.+ .-.+++|+++|..+++.++++ +|
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIED-SYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchh-eEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 79999999999999999999999998888776654 22222233 234559999999999988777 67
Q ss_pred ccCCCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHHH
Q psy3301 477 LPVLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFVK 545 (608)
Q Consensus 477 d~~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~~ 545 (608)
| +++.+ +.+. +.....++|+++||||.|+...+++..++...++++++..+++++| ++.|++++|.+
T Consensus 81 ~--~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~ 158 (168)
T cd04177 81 S--VTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFID 158 (168)
T ss_pred E--CCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHH
Confidence 7 66654 2222 2223568999999999999877777777888899999854589999 89999999999
Q ss_pred HHHHHc
Q psy3301 546 LATMAA 551 (608)
Q Consensus 546 l~~~a~ 551 (608)
++..++
T Consensus 159 i~~~~~ 164 (168)
T cd04177 159 LVRQII 164 (168)
T ss_pred HHHHHh
Confidence 998654
No 246
>KOG0096|consensus
Probab=99.66 E-value=1.2e-16 Score=143.34 Aligned_cols=153 Identities=21% Similarity=0.275 Sum_probs=128.5
Q ss_pred CCccccCCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCcc-CC-CceeEEEEeCCCCCCChHHHHHHH
Q psy3301 1 MVMKVSLRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDV-TP-EMVPTHIVDYSEVDQTVDELTEEI 78 (608)
Q Consensus 1 ~~~~~~~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~-~~-~~~~~~i~Dt~G~~~~~~~~~~~~ 78 (608)
|++.......+|++++|+.|.|||+++++.+.++|..+++++..-...+..+ +. ..+++..|||+|+|.+.....-++
T Consensus 1 M~~p~~~~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyy 80 (216)
T KOG0096|consen 1 MTSPPQQGLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYY 80 (216)
T ss_pred CCCCccccceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccE
Confidence 4443333458999999999999999999999999999887776444333333 22 358999999999999988888889
Q ss_pred HhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC---------------cccCcccCcCH
Q psy3301 79 QKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST---------------VESSAKTLKNI 143 (608)
Q Consensus 79 ~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~---------------~e~SAk~~~~i 143 (608)
-++.++|++||++.+-++.++. .|.+.+. ....++||+++|||.|...... ++.||+++.|.
T Consensus 81 I~~qcAiimFdVtsr~t~~n~~-rwhrd~~--rv~~NiPiv~cGNKvDi~~r~~k~k~v~~~rkknl~y~~iSaksn~Nf 157 (216)
T KOG0096|consen 81 IQGQCAIIMFDVTSRFTYKNVP-RWHRDLV--RVRENIPIVLCGNKVDIKARKVKAKPVSFHRKKNLQYYEISAKSNYNF 157 (216)
T ss_pred EecceeEEEeeeeehhhhhcch-HHHHHHH--HHhcCCCeeeeccceeccccccccccceeeecccceeEEeeccccccc
Confidence 9999999999999999999999 7888777 4567899999999999887652 99999999999
Q ss_pred HHHHHHHHHHHhC
Q psy3301 144 SEMFYYAQKAVLH 156 (608)
Q Consensus 144 ~~lf~~l~~~i~~ 156 (608)
+.-|.++.+.+.-
T Consensus 158 ekPFl~LarKl~G 170 (216)
T KOG0096|consen 158 ERPFLWLARKLTG 170 (216)
T ss_pred ccchHHHhhhhcC
Confidence 9999999998854
No 247
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.66 E-value=1.7e-16 Score=151.69 Aligned_cols=142 Identities=15% Similarity=0.143 Sum_probs=107.5
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCC-CCCCCCCCCcCCCceEe-------cceEeCCcceeEeeeeccccc------c
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDS-SKTSITSPVECDPPYTI-------NTTTVYGQEKYLVLKEILVRD------E 475 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~-~~~~t~~~~~~~~~~~i-------~~~~v~Gqe~~~~l~~~~~~~------v 475 (608)
+||+|+|++|||||||+++|+++.|.. .+.+|.+.+.....+.+ +-.+++|+++|..++..++++ +
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999999864 45555554211122333 333558999998887777665 7
Q ss_pred cccCCCCcc--cccccc------cCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHHH
Q psy3301 476 QLPVLLPVD--VDCDKY------FSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFVK 545 (608)
Q Consensus 476 ~d~~l~~~~--~~~~~~------~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~~ 545 (608)
|| +++.+ +.+..| ....++|+++||||+||...+++..+++.++++.++++ ++++| ++.|++++|..
T Consensus 81 ~D--~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~-~~e~Sa~~~~~v~~l~~~ 157 (191)
T cd04112 81 YD--ITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVP-FMETSAKTGLNVELAFTA 157 (191)
T ss_pred EE--CCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCe-EEEEeCCCCCCHHHHHHH
Confidence 88 77654 223211 22457999999999999877777778899999999875 89999 89999999999
Q ss_pred HHHHHcCCC
Q psy3301 546 LATMAAFPR 554 (608)
Q Consensus 546 l~~~a~~p~ 554 (608)
|++.+....
T Consensus 158 l~~~~~~~~ 166 (191)
T cd04112 158 VAKELKHRK 166 (191)
T ss_pred HHHHHHHhc
Confidence 999886554
No 248
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.66 E-value=6.2e-16 Score=147.90 Aligned_cols=142 Identities=20% Similarity=0.191 Sum_probs=96.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCC----CCCc----CCCC-CcceEecCcc------------CCCceeEEEEeCCCCCC
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEE----FPEL----VPSK-AEEITIPPDV------------TPEMVPTHIVDYSEVDQ 69 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~----~~~~----~~~~-~~~~~i~~~~------------~~~~~~~~i~Dt~G~~~ 69 (608)
++|+++|++|+|||||+++|+... +... .+.. .........+ ...+..+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 589999999999999999999731 1111 1111 0111111111 13367899999999866
Q ss_pred ChHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCC------------------
Q psy3301 70 TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYS------------------ 131 (608)
Q Consensus 70 ~~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~------------------ 131 (608)
+.......+..+|++++|+|+++..+..... .|. ... . .+.|+++|+||+|+....
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~-~~~-~~~--~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~ 154 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAE-CLV-IGE--I--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLE 154 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHH-HHH-HHH--H--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 5444455567789999999998865444332 222 112 1 257999999999986321
Q ss_pred -----C---cccCcccCcCHHHHHHHHHHHHhCCC
Q psy3301 132 -----T---VESSAKTLKNISEMFYYAQKAVLHPM 158 (608)
Q Consensus 132 -----~---~e~SAk~~~~i~~lf~~l~~~i~~~~ 158 (608)
. +++||++|.|++++++++...+.-|.
T Consensus 155 ~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~~ 189 (192)
T cd01889 155 KTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVLPL 189 (192)
T ss_pred hcCcCCCCEEEEeccCCCCHHHHHHHHHhcccccc
Confidence 1 78999999999999999998886543
No 249
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.66 E-value=1.4e-16 Score=147.67 Aligned_cols=137 Identities=19% Similarity=0.239 Sum_probs=105.6
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCce-------EecceEeCCcceeEeeeeccccc------cc
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPY-------TINTTTVYGQEKYLVLKEILVRD------EQ 476 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~-------~i~~~~v~Gqe~~~~l~~~~~~~------v~ 476 (608)
+||+|+|++|||||||+++++++.+...+.++.+.......+ .++-.+.+|+++|..++..+++. +|
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 589999999999999999999999988777666541111222 23334458988887777766665 77
Q ss_pred ccCCCCcc--cccc------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHHHH
Q psy3301 477 LPVLLPVD--VDCD------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFVKL 546 (608)
Q Consensus 477 d~~l~~~~--~~~~------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~~l 546 (608)
| +++.+ .... +....+++|+++||||+|+...+++..+++..+++.+++. ++++| ++.|++++|..+
T Consensus 81 d--~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~~~ 157 (161)
T cd04113 81 D--ITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLL-FLETSALTGENVEEAFLKC 157 (161)
T ss_pred E--CCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHH
Confidence 7 66654 2222 2233578999999999999887777788899999999965 89999 899999999999
Q ss_pred HHH
Q psy3301 547 ATM 549 (608)
Q Consensus 547 ~~~ 549 (608)
++.
T Consensus 158 ~~~ 160 (161)
T cd04113 158 ARS 160 (161)
T ss_pred HHh
Confidence 874
No 250
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.65 E-value=4.3e-16 Score=143.87 Aligned_cols=126 Identities=17% Similarity=0.139 Sum_probs=89.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCCh----HHHHHHHHhcCcEEEE
Q psy3301 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTV----DELTEEIQKAHVICLV 87 (608)
Q Consensus 12 kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~----~~~~~~~~~ad~iilV 87 (608)
+|+++|.+|||||||+++|.+.. .. .. .+....+... .+|||||..... ..+...++.||++++|
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~-~~-~~-----~~~~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v 71 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNY-TL-AR-----KTQAVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIYV 71 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC-cc-Cc-----cceEEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEEE
Confidence 79999999999999999987653 21 11 1111122222 279999973222 2233457899999999
Q ss_pred EEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC----------------cccCcccCcCHHHHHHHHH
Q psy3301 88 YSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST----------------VESSAKTLKNISEMFYYAQ 151 (608)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------------~e~SAk~~~~i~~lf~~l~ 151 (608)
+|+++.+++.. .|+..+ ..+.|+++++||+|+..... +++||++|.||+++|..+.
T Consensus 72 ~d~~~~~s~~~---~~~~~~-----~~~~~ii~v~nK~Dl~~~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~ 143 (158)
T PRK15467 72 HGANDPESRLP---AGLLDI-----GVSKRQIAVISKTDMPDADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLA 143 (158)
T ss_pred EeCCCcccccC---HHHHhc-----cCCCCeEEEEEccccCcccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHH
Confidence 99998877633 343332 23679999999999865322 8899999999999999998
Q ss_pred HHHhC
Q psy3301 152 KAVLH 156 (608)
Q Consensus 152 ~~i~~ 156 (608)
+.+..
T Consensus 144 ~~~~~ 148 (158)
T PRK15467 144 SLTKQ 148 (158)
T ss_pred Hhchh
Confidence 87743
No 251
>KOG0028|consensus
Probab=99.65 E-value=7.3e-16 Score=134.26 Aligned_cols=148 Identities=18% Similarity=0.208 Sum_probs=132.0
Q ss_pred cccccChHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHH
Q psy3301 164 SDKQELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFL 243 (608)
Q Consensus 164 ~~~~~l~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l 243 (608)
....++++++.+.++.+|..+|.+++|.|+..||.-.++ |+|..+..+++..++..+++. +.|.|+|++|...
T Consensus 22 ~~~~~l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmr-alGFE~~k~ei~kll~d~dk~------~~g~i~fe~f~~~ 94 (172)
T KOG0028|consen 22 SPKSELTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMR-ALGFEPKKEEILKLLADVDKE------GSGKITFEDFRRV 94 (172)
T ss_pred CCCccccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHH-HcCCCcchHHHHHHHHhhhhc------cCceechHHHHHH
Confidence 455678899999999999999999999999999998888 589999999999999999999 8999999999999
Q ss_pred HHHHHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhc
Q psy3301 244 HNLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFS 323 (608)
Q Consensus 244 ~~~~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~ 323 (608)
++..+-.+.. .+.++.+|+.||-|++|+||+.+|+.+..
T Consensus 95 mt~k~~e~dt-----------------------------------------~eEi~~afrl~D~D~~Gkis~~~lkrvak 133 (172)
T KOG0028|consen 95 MTVKLGERDT-----------------------------------------KEEIKKAFRLFDDDKTGKISQRNLKRVAK 133 (172)
T ss_pred HHHHHhccCc-----------------------------------------HHHHHHHHHcccccCCCCcCHHHHHHHHH
Confidence 8765544322 46788899999999999999999999999
Q ss_pred cCCCCCCCCCccccccceecCCCCccchhhHHhHhh
Q psy3301 324 LCPPECPPWTDREMRAMVATNSKGWITMQGFLCYWI 359 (608)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~ 359 (608)
..|++....+..+|+.++|.+++|.|+-++|+....
T Consensus 134 eLgenltD~El~eMIeEAd~d~dgevneeEF~~imk 169 (172)
T KOG0028|consen 134 ELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMK 169 (172)
T ss_pred HhCccccHHHHHHHHHHhcccccccccHHHHHHHHh
Confidence 999777777788999999999999999999987654
No 252
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.65 E-value=1.2e-16 Score=153.01 Aligned_cols=134 Identities=19% Similarity=0.169 Sum_probs=103.2
Q ss_pred EccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEec-------ceEeCCcceeEeeeeccccc------ccccCCC
Q psy3301 415 IGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTIN-------TTTVYGQEKYLVLKEILVRD------EQLPVLL 481 (608)
Q Consensus 415 iG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~-------~~~v~Gqe~~~~l~~~~~~~------v~d~~l~ 481 (608)
+|++|||||||+++|+.+.|...|.+|++.+.....+.++ -.+++|+++|..+++.++++ ||| ++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D--~t 78 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD--VT 78 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEE--CC
Confidence 6999999999999999999988888787663332333333 33449999999999998887 899 88
Q ss_pred Ccc--ccccccc-----CCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHHHHHHHHcC
Q psy3301 482 PVD--VDCDKYF-----STSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFVKLATMAAF 552 (608)
Q Consensus 482 ~~~--~~~~~~~-----~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~~l~~~a~~ 552 (608)
+.+ ..+..|. ..+++|++|||||+||.. +.+.. +..++++..++. ++++| ++.||+++|.+|+..+..
T Consensus 79 ~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~-~~v~~-~~~~~~~~~~~~-~~e~SAk~~~~v~~~F~~l~~~i~~ 155 (200)
T smart00176 79 ARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKD-RKVKA-KSITFHRKKNLQ-YYDISAKSNYNFEKPFLWLARKLIG 155 (200)
T ss_pred ChHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc-ccCCH-HHHHHHHHcCCE-EEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 766 3333221 136899999999999965 34433 345788888886 99999 899999999999998865
Q ss_pred C
Q psy3301 553 P 553 (608)
Q Consensus 553 p 553 (608)
.
T Consensus 156 ~ 156 (200)
T smart00176 156 D 156 (200)
T ss_pred c
Confidence 4
No 253
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.65 E-value=4.3e-16 Score=146.54 Aligned_cols=138 Identities=17% Similarity=0.146 Sum_probs=103.0
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEec-------ceEeCCcceeEeeeeccccc------cc
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTIN-------TTTVYGQEKYLVLKEILVRD------EQ 476 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~-------~~~v~Gqe~~~~l~~~~~~~------v~ 476 (608)
.|++|+|++|||||||+++|+++.|...+.+|.+. .+...+.++ -.+.+|+++|..++..++.+ +|
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFE-NYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccc-ceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 58999999999999999999999998888776654 222223332 23448999988887766655 58
Q ss_pred ccCCCCcc--cccc-ccc-----CCCCCcEEEEEeCCCCCcc------------hhcccccHHHHHHHcCCCCceEEc--
Q psy3301 477 LPVLLPVD--VDCD-KYF-----STSKIPVMLVAGKSDMPRA------------RQDYLMQPDIFCETHKLSPAHSFS-- 534 (608)
Q Consensus 477 d~~l~~~~--~~~~-~~~-----~~~~~p~ilVgnK~DL~~~------------~~~~~~~~~~~~~~~~~~~~~~~S-- 534 (608)
| +++.+ +.+. .|. ..+++|+++||||+|+... +.+...++.++++.++..+++++|
T Consensus 81 ~--~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 158 (175)
T cd01870 81 S--IDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAK 158 (175)
T ss_pred E--CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccc
Confidence 7 77654 2221 111 1368999999999998642 234456788999998876689999
Q ss_pred cCCCHHHHHHHHHHHH
Q psy3301 535 AANNDREVFVKLATMA 550 (608)
Q Consensus 535 ~~~~v~e~F~~l~~~a 550 (608)
++.|++++|..|+++|
T Consensus 159 ~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 159 TKEGVREVFEMATRAA 174 (175)
T ss_pred cCcCHHHHHHHHHHHh
Confidence 8999999999999876
No 254
>KOG0083|consensus
Probab=99.65 E-value=9.9e-18 Score=140.98 Aligned_cols=138 Identities=17% Similarity=0.199 Sum_probs=114.4
Q ss_pred EEccCCCchHHHHHHHhcCCCCCC-CCCCCCCCcCCCceEecceEe-------CCcceeEeeeeccccc------ccccC
Q psy3301 414 VIGNRSTGKTALCQSILRKHHDSS-KTSITSPVECDPPYTINTTTV-------YGQEKYLVLKEILVRD------EQLPV 479 (608)
Q Consensus 414 viG~~gvGKTsll~~f~~~~~~~~-~~~t~~~~~~~~~~~i~~~~v-------~Gqe~~~~l~~~~~~~------v~d~~ 479 (608)
++|++++|||+|+-||-.+.|... ..+|.+++.-...+.++++.| +|||+|++.+..||++ +||
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllyd-- 79 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYD-- 79 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeee--
Confidence 689999999999999988887543 345777733335555665554 9999999999999998 899
Q ss_pred CCCcc--cccccc------cCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHHHHHHH
Q psy3301 480 LLPVD--VDCDKY------FSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFVKLATM 549 (608)
Q Consensus 480 l~~~~--~~~~~~------~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~~l~~~ 549 (608)
+.++. ++|..| +....+.+.++|||+|+...|.+..++++.+|+.+++| ++++| +|.||+-.|..|++.
T Consensus 80 iankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ip-fmetsaktg~nvd~af~~ia~~ 158 (192)
T KOG0083|consen 80 IANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIP-FMETSAKTGFNVDLAFLAIAEE 158 (192)
T ss_pred cccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCC-ceeccccccccHhHHHHHHHHH
Confidence 77766 888733 34577899999999999999999999999999999997 99999 999999999999988
Q ss_pred HcCCC
Q psy3301 550 AAFPR 554 (608)
Q Consensus 550 a~~p~ 554 (608)
...-.
T Consensus 159 l~k~~ 163 (192)
T KOG0083|consen 159 LKKLK 163 (192)
T ss_pred HHHhc
Confidence 75543
No 255
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.65 E-value=1.1e-15 Score=164.92 Aligned_cols=140 Identities=21% Similarity=0.232 Sum_probs=102.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCC--cCCCCCcceEecCccCCCceeEEEEeCCCCCCChHH-----------HH
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPE--LVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDE-----------LT 75 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~-----------~~ 75 (608)
..++|+++|.+|||||||+++|++..... ..+++ +...+...+...+..+.+|||||..+.... ..
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gt-t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~ 249 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGT-TRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTL 249 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCc-eECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHH
Confidence 45899999999999999999999877432 22222 233332333344568999999997554321 13
Q ss_pred HHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCC-CCC--------------------cc
Q psy3301 76 EEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVD-YST--------------------VE 134 (608)
Q Consensus 76 ~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~--------------------~e 134 (608)
..++.+|++|+|+|++++.+.+... +...+. ..++|+++|+||+|+.. ... ++
T Consensus 250 ~~~~~ad~~ilV~D~~~~~~~~~~~--~~~~~~----~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~ 323 (429)
T TIGR03594 250 KAIERADVVLLVLDATEGITEQDLR--IAGLIL----EAGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVF 323 (429)
T ss_pred HHHHhCCEEEEEEECCCCccHHHHH--HHHHHH----HcCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEE
Confidence 4689999999999999988776653 444443 23689999999999972 111 88
Q ss_pred cCcccCcCHHHHHHHHHHHHh
Q psy3301 135 SSAKTLKNISEMFYYAQKAVL 155 (608)
Q Consensus 135 ~SAk~~~~i~~lf~~l~~~i~ 155 (608)
|||++|.|++++|+++.+...
T Consensus 324 ~SA~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 324 ISALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred EeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999887653
No 256
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.65 E-value=4.9e-16 Score=140.78 Aligned_cols=131 Identities=21% Similarity=0.187 Sum_probs=91.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCC-cCCCCCcceEecCccCCCceeEEEEeCCCCCCC------hHHHHHHH--Hhc
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPE-LVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQT------VDELTEEI--QKA 81 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~------~~~~~~~~--~~a 81 (608)
|+|+++|.||||||||+|+|++.+... ++|.++ .......+...+..+.++|+||.-.. ......++ .+.
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~T-v~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~ 79 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTT-VEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKP 79 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSS-SEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCC-eeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCC
Confidence 689999999999999999999988543 355554 33334445555688999999994322 11224444 589
Q ss_pred CcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC----------------cccCcccCcCHHH
Q psy3301 82 HVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST----------------VESSAKTLKNISE 145 (608)
Q Consensus 82 d~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------------~e~SAk~~~~i~~ 145 (608)
|++++|.|+++.+.-. ++...+. ..++|+++|.||+|+..... +++||+++.|+++
T Consensus 80 D~ii~VvDa~~l~r~l----~l~~ql~----e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~ 151 (156)
T PF02421_consen 80 DLIIVVVDATNLERNL----YLTLQLL----ELGIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEGIDE 151 (156)
T ss_dssp SEEEEEEEGGGHHHHH----HHHHHHH----HTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred CEEEEECCCCCHHHHH----HHHHHHH----HcCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence 9999999998754322 2323333 24799999999999876554 8999999999999
Q ss_pred HHHHH
Q psy3301 146 MFYYA 150 (608)
Q Consensus 146 lf~~l 150 (608)
+++.+
T Consensus 152 L~~~I 156 (156)
T PF02421_consen 152 LKDAI 156 (156)
T ss_dssp HHHHH
T ss_pred HHhhC
Confidence 98764
No 257
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.64 E-value=1.4e-15 Score=138.04 Aligned_cols=135 Identities=34% Similarity=0.441 Sum_probs=104.7
Q ss_pred EEcCCCCCHHHHHHHHHcCCC-CCcCCCCC-cceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEcCC
Q psy3301 15 LLGDRHVGKTSLILSLVSEEF-PELVPSKA-EEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSVVD 92 (608)
Q Consensus 15 lvG~~~vGKTSLi~~l~~~~~-~~~~~~~~-~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~~ 92 (608)
|+|++|+|||||++++.+... .....++. ...............+.+||++|+..+.......++.+|++++|+|+++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 80 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD 80 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence 589999999999999999877 33333322 2223333333457889999999998888777888999999999999999
Q ss_pred hhhHHHHHHhH-HHHHhhhccCCCCcEEEEEeCcCCCCCCC------------------cccCcccCcCHHHHHHHHH
Q psy3301 93 DASIDRLSSHW-LPFLRNCLVDTCLPIVLVGNKVDLVDYST------------------VESSAKTLKNISEMFYYAQ 151 (608)
Q Consensus 93 ~~s~~~~~~~~-~~~i~~~~~~~~~piilv~nK~Dl~~~~~------------------~e~SAk~~~~i~~lf~~l~ 151 (608)
+.++.... .| ...... ....++|+++|+||+|+..... +++||+++.|+.++++++.
T Consensus 81 ~~~~~~~~-~~~~~~~~~-~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 81 RESFENVK-EWLLLILIN-KEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred HHHHHHHH-HHHHHHHHh-hccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 99988887 44 222222 4567899999999999975432 8999999999999999875
No 258
>COG1159 Era GTPase [General function prediction only]
Probab=99.64 E-value=1.6e-15 Score=147.74 Aligned_cols=140 Identities=21% Similarity=0.274 Sum_probs=110.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCc-CCCCCcceEecCccCCCceeEEEEeCCCCCCChHHH--------HHHHH
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPEL-VPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDEL--------TEEIQ 79 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~--------~~~~~ 79 (608)
+.--|+|+|.||||||||+|++++.+.... ..+.+++..+..-++.+...+.++||||...-...+ ...+.
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~ 84 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALK 84 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhc
Confidence 345799999999999999999999997765 455567888877788889999999999965544333 45578
Q ss_pred hcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC------------------cccCcccCc
Q psy3301 80 KAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST------------------VESSAKTLK 141 (608)
Q Consensus 80 ~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~------------------~e~SAk~~~ 141 (608)
.+|++++|.|+++...-.. ...++.++. .+.|++++.||+|...... +++||++|.
T Consensus 85 dvDlilfvvd~~~~~~~~d--~~il~~lk~----~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~ 158 (298)
T COG1159 85 DVDLILFVVDADEGWGPGD--EFILEQLKK----TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGD 158 (298)
T ss_pred cCcEEEEEEeccccCCccH--HHHHHHHhh----cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccC
Confidence 8999999999987533221 134455542 4679999999999876543 999999999
Q ss_pred CHHHHHHHHHHHH
Q psy3301 142 NISEMFYYAQKAV 154 (608)
Q Consensus 142 ~i~~lf~~l~~~i 154 (608)
|++.+...+...+
T Consensus 159 n~~~L~~~i~~~L 171 (298)
T COG1159 159 NVDTLLEIIKEYL 171 (298)
T ss_pred CHHHHHHHHHHhC
Confidence 9999999887776
No 259
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.64 E-value=3.3e-16 Score=145.35 Aligned_cols=137 Identities=18% Similarity=0.209 Sum_probs=102.0
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCC-------CceEecceEeCCcceeEeeeeccccc------cc
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECD-------PPYTINTTTVYGQEKYLVLKEILVRD------EQ 476 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~-------~~~~i~~~~v~Gqe~~~~l~~~~~~~------v~ 476 (608)
+||+|+|++|||||||+++|+++.|.+.+.++.+.+.+. ..+.++-.+.+|+++|..+++.+++. +|
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 589999999999999999999999988776555432221 12334444559999999999888877 78
Q ss_pred ccCCCCcc--ccccccc-----CCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHHHHH
Q psy3301 477 LPVLLPVD--VDCDKYF-----STSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFVKLA 547 (608)
Q Consensus 477 d~~l~~~~--~~~~~~~-----~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~~l~ 547 (608)
| +++.. ..+..|+ ..+++|+++||||+|+.... ..+..++++.++++ ++++| ++.|++++|..++
T Consensus 81 d--~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~---~~~~~~~~~~~~~~-~~~~Sa~~~~gv~~l~~~l~ 154 (161)
T cd04124 81 D--VTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSV---TQKKFNFAEKHNLP-LYYVSAADGTNVVKLFQDAI 154 (161)
T ss_pred E--CCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhH---HHHHHHHHHHcCCe-EEEEeCCCCCCHHHHHHHHH
Confidence 8 66654 2232221 23579999999999995321 34566788888875 88899 8999999999999
Q ss_pred HHHcC
Q psy3301 548 TMAAF 552 (608)
Q Consensus 548 ~~a~~ 552 (608)
+.++.
T Consensus 155 ~~~~~ 159 (161)
T cd04124 155 KLAVS 159 (161)
T ss_pred HHHHh
Confidence 88753
No 260
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.64 E-value=2.4e-15 Score=139.45 Aligned_cols=139 Identities=19% Similarity=0.248 Sum_probs=98.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCcC-CCCCcceEecCccCCCceeEEEEeCCCCCCChHH--------HHHHHH
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELV-PSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDE--------LTEEIQ 79 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~~ 79 (608)
...+|+++|++|+|||||++++.+....... .+..+...........+..+.+|||||....... ....+.
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999988754321 1111222222233445678999999997655432 344588
Q ss_pred hcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC------------------cccCcccCc
Q psy3301 80 KAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST------------------VESSAKTLK 141 (608)
Q Consensus 80 ~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~------------------~e~SAk~~~ 141 (608)
.+|++++|+|++++.+. ....+...+.. .+.|+++|+||+|+..... +++|++++.
T Consensus 82 ~~d~i~~v~d~~~~~~~--~~~~~~~~~~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 155 (168)
T cd04163 82 DVDLVLFVVDASEPIGE--GDEFILELLKK----SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGE 155 (168)
T ss_pred hCCEEEEEEECCCccCc--hHHHHHHHHHH----hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCC
Confidence 99999999999987221 12134444442 2689999999999973221 889999999
Q ss_pred CHHHHHHHHHHH
Q psy3301 142 NISEMFYYAQKA 153 (608)
Q Consensus 142 ~i~~lf~~l~~~ 153 (608)
|++++++.+.+.
T Consensus 156 ~~~~l~~~l~~~ 167 (168)
T cd04163 156 NVDELLEEIVKY 167 (168)
T ss_pred ChHHHHHHHHhh
Confidence 999999988654
No 261
>PRK00089 era GTPase Era; Reviewed
Probab=99.64 E-value=2.6e-15 Score=153.33 Aligned_cols=140 Identities=21% Similarity=0.244 Sum_probs=100.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHcCCCCCc-CCCCCcceEecCccCCCceeEEEEeCCCCCCChH--------HHHHHHHh
Q psy3301 10 NVRILLLGDRHVGKTSLILSLVSEEFPEL-VPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVD--------ELTEEIQK 80 (608)
Q Consensus 10 ~~kI~lvG~~~vGKTSLi~~l~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~~ 80 (608)
.-.|+|+|++|||||||+|+|++...... ..+.+++..+.......+..+.+|||||...... .....+..
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~ 84 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKD 84 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhc
Confidence 45699999999999999999999886543 2222233333333333557899999999755432 22446788
Q ss_pred cCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCC-CC-----------------cccCcccCcC
Q psy3301 81 AHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDY-ST-----------------VESSAKTLKN 142 (608)
Q Consensus 81 ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~-~~-----------------~e~SAk~~~~ 142 (608)
+|++++|+|+++..+ .....+...+. ..+.|+++|+||+|+... .. +++||+++.|
T Consensus 85 ~D~il~vvd~~~~~~--~~~~~i~~~l~----~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~g 158 (292)
T PRK00089 85 VDLVLFVVDADEKIG--PGDEFILEKLK----KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDN 158 (292)
T ss_pred CCEEEEEEeCCCCCC--hhHHHHHHHHh----hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCC
Confidence 999999999988322 11213334443 236899999999999833 11 7999999999
Q ss_pred HHHHHHHHHHHHh
Q psy3301 143 ISEMFYYAQKAVL 155 (608)
Q Consensus 143 i~~lf~~l~~~i~ 155 (608)
++++++++.+.+.
T Consensus 159 v~~L~~~L~~~l~ 171 (292)
T PRK00089 159 VDELLDVIAKYLP 171 (292)
T ss_pred HHHHHHHHHHhCC
Confidence 9999999988774
No 262
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.63 E-value=7.6e-16 Score=146.64 Aligned_cols=142 Identities=18% Similarity=0.162 Sum_probs=103.0
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecc-------eEeCCcceeEeeeeccccc------cc
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINT-------TTVYGQEKYLVLKEILVRD------EQ 476 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~-------~~v~Gqe~~~~l~~~~~~~------v~ 476 (608)
.|++|+|++|||||||+++|..+.|...+.++... .+...+.+++ .+.+|++.|..+.+.+++. +|
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFE-NYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccc-eEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 48999999999999999999988887776655433 2222223222 2448888887766555544 57
Q ss_pred ccCCCCcc--cccc-cc-----cCCCCCcEEEEEeCCCCCc----------chhcccccHHHHHHHcCCCCceEEc--cC
Q psy3301 477 LPVLLPVD--VDCD-KY-----FSTSKIPVMLVAGKSDMPR----------ARQDYLMQPDIFCETHKLSPAHSFS--AA 536 (608)
Q Consensus 477 d~~l~~~~--~~~~-~~-----~~~~~~p~ilVgnK~DL~~----------~~~~~~~~~~~~~~~~~~~~~~~~S--~~ 536 (608)
| +++.+ +.+. .| ...+++|+++||||+||.+ .+.+..+++.+++++++..+++++| ++
T Consensus 81 ~--i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 158 (187)
T cd04129 81 A--VDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTG 158 (187)
T ss_pred E--CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCC
Confidence 7 66655 2222 11 1235799999999999954 3445567789999999976699999 89
Q ss_pred CCHHHHHHHHHHHHcCCC
Q psy3301 537 NNDREVFVKLATMAAFPR 554 (608)
Q Consensus 537 ~~v~e~F~~l~~~a~~p~ 554 (608)
.|++++|..+++.++--+
T Consensus 159 ~~v~~~f~~l~~~~~~~~ 176 (187)
T cd04129 159 EGVDDVFEAATRAALLVR 176 (187)
T ss_pred CCHHHHHHHHHHHHhccc
Confidence 999999999998876544
No 263
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.63 E-value=2.6e-16 Score=146.25 Aligned_cols=138 Identities=20% Similarity=0.193 Sum_probs=103.4
Q ss_pred EEEEEEccCCCchHHHHHHHhcC--CCCCCCCCCCCCCcCC--------CceEecceEeCCcceeEeeeeccccc-----
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRK--HHDSSKTSITSPVECD--------PPYTINTTTVYGQEKYLVLKEILVRD----- 474 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~--~~~~~~~~t~~~~~~~--------~~~~i~~~~v~Gqe~~~~l~~~~~~~----- 474 (608)
+||+|+|++|||||||++++.++ .|...+.++.+.+.+. ..+.+.-.+++|+++|..+.+.+.+.
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 48999999999999999999865 6877887666542211 22333344558998888777776665
Q ss_pred -ccccCCCCcc--ccccccc-----CCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHH
Q psy3301 475 -EQLPVLLPVD--VDCDKYF-----STSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFV 544 (608)
Q Consensus 475 -v~d~~l~~~~--~~~~~~~-----~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~ 544 (608)
+|| +++.+ ..+..|+ ...++|+++||||+|+.+.+++...++..+++.++++ ++++| ++.|++++|.
T Consensus 81 ~v~d--~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l~~ 157 (164)
T cd04101 81 LVYD--VSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLK-FFKTSALRGVGYEEPFE 157 (164)
T ss_pred EEEE--CcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCe-EEEEeCCCCCChHHHHH
Confidence 788 77665 2232221 1257999999999999877777666778888888876 88999 8999999999
Q ss_pred HHHHHH
Q psy3301 545 KLATMA 550 (608)
Q Consensus 545 ~l~~~a 550 (608)
.|++++
T Consensus 158 ~l~~~~ 163 (164)
T cd04101 158 SLARAF 163 (164)
T ss_pred HHHHHh
Confidence 999876
No 264
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.63 E-value=3e-15 Score=165.29 Aligned_cols=143 Identities=22% Similarity=0.175 Sum_probs=107.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHcCC-------CCCcCCCCC-----cceEe-----cCcc---CCCceeEEEEeCCCCCC
Q psy3301 10 NVRILLLGDRHVGKTSLILSLVSEE-------FPELVPSKA-----EEITI-----PPDV---TPEMVPTHIVDYSEVDQ 69 (608)
Q Consensus 10 ~~kI~lvG~~~vGKTSLi~~l~~~~-------~~~~~~~~~-----~~~~i-----~~~~---~~~~~~~~i~Dt~G~~~ 69 (608)
..+|+|+|+.++|||||+++|+... +...+..+. ...++ ...+ +...+.++||||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 4589999999999999999999753 111121110 01111 1111 24458899999999999
Q ss_pred ChHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------
Q psy3301 70 TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST----------------- 132 (608)
Q Consensus 70 ~~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------------- 132 (608)
|...+..+++.+|++++|+|+++..+.+... .|...+. .++|+++|+||+|+.....
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~-~~~~~~~-----~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~~~~ 156 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLA-NVYLALE-----NDLEIIPVINKIDLPSADPERVKKEIEEVIGLDASE 156 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHH-HHHHHHH-----cCCCEEEEEECcCCCccCHHHHHHHHHHHhCCCcce
Confidence 9999999999999999999999987777665 5554333 3689999999999964321
Q ss_pred -cccCcccCcCHHHHHHHHHHHHhCCC
Q psy3301 133 -VESSAKTLKNISEMFYYAQKAVLHPM 158 (608)
Q Consensus 133 -~e~SAk~~~~i~~lf~~l~~~i~~~~ 158 (608)
+++||++|.||+++|+.+.+.+..|.
T Consensus 157 vi~vSAktG~GI~~Lle~I~~~lp~p~ 183 (595)
T TIGR01393 157 AILASAKTGIGIEEILEAIVKRVPPPK 183 (595)
T ss_pred EEEeeccCCCCHHHHHHHHHHhCCCCC
Confidence 67999999999999999998876553
No 265
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.63 E-value=5e-16 Score=144.64 Aligned_cols=136 Identities=20% Similarity=0.156 Sum_probs=98.8
Q ss_pred EEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEec-------ceEeCCccee-Eeeeeccccc------cc
Q psy3301 411 VCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTIN-------TTTVYGQEKY-LVLKEILVRD------EQ 476 (608)
Q Consensus 411 k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~-------~~~v~Gqe~~-~~l~~~~~~~------v~ 476 (608)
||+|+|++|||||||+++|+.+.|...+.++... .+...+.++ -++++|++++ ......+++. +|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLES-LYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHH-hceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 6899999999999999999999998777665533 223233333 3444888753 2333334443 78
Q ss_pred ccCCCCcc--cccc-------cccC-CCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cC-CCHHHHH
Q psy3301 477 LPVLLPVD--VDCD-------KYFS-TSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AA-NNDREVF 543 (608)
Q Consensus 477 d~~l~~~~--~~~~-------~~~~-~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~-~~v~e~F 543 (608)
| +++.+ +.+. .... ..++|+++||||+|+.+.+.+..+++.++++.++++ ++++| ++ .||+++|
T Consensus 80 d--~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sa~~~~~~v~~~f 156 (165)
T cd04146 80 S--ITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCL-FFEVSAAEDYDGVHSVF 156 (165)
T ss_pred E--CCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCE-EEEeCCCCCchhHHHHH
Confidence 8 76655 2222 1111 458999999999999877777778899999999975 89999 67 5999999
Q ss_pred HHHHHHH
Q psy3301 544 VKLATMA 550 (608)
Q Consensus 544 ~~l~~~a 550 (608)
.+|++.+
T Consensus 157 ~~l~~~~ 163 (165)
T cd04146 157 HELCREV 163 (165)
T ss_pred HHHHHHH
Confidence 9999876
No 266
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.63 E-value=9.1e-16 Score=149.87 Aligned_cols=140 Identities=14% Similarity=0.189 Sum_probs=101.8
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCC-CCCCCCCCCCcCCCceEecc-------eEeCCcceeEeeeecccc-c------
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHD-SSKTSITSPVECDPPYTINT-------TTVYGQEKYLVLKEILVR-D------ 474 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~-~~~~~t~~~~~~~~~~~i~~-------~~v~Gqe~~~~l~~~~~~-~------ 474 (608)
+||+++|++|||||||+++|+++.|. ..+.++.+.+.+...+.+++ ++++|++.+ +...+++ +
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~--~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMW--TEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchH--HHhHHhhcCCCEEEE
Confidence 58999999999999999999998886 66766654322233333322 334787732 2233333 2
Q ss_pred ccccCCCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHH
Q psy3301 475 EQLPVLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVF 543 (608)
Q Consensus 475 v~d~~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F 543 (608)
||| +++.+ +.+. +.....++|+++||||+||...+++..+++.+++..++++ ++++| ++.||+++|
T Consensus 79 V~d--~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~-~~e~SA~~~~gv~~l~ 155 (221)
T cd04148 79 VYS--VTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCK-FIETSAGLQHNVDELL 155 (221)
T ss_pred EEE--CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCe-EEEecCCCCCCHHHHH
Confidence 788 77765 2222 1122368999999999999887888888889999999885 89999 899999999
Q ss_pred HHHHHHHcCCC
Q psy3301 544 VKLATMAAFPR 554 (608)
Q Consensus 544 ~~l~~~a~~p~ 554 (608)
..|++.+....
T Consensus 156 ~~l~~~~~~~~ 166 (221)
T cd04148 156 EGIVRQIRLRR 166 (221)
T ss_pred HHHHHHHHhhh
Confidence 99999886543
No 267
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.62 E-value=7e-16 Score=147.62 Aligned_cols=141 Identities=18% Similarity=0.171 Sum_probs=103.7
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCC-CCCCCCCCCcCCCceEec-------ceEeCCcceeEeeeeccccc------c
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDS-SKTSITSPVECDPPYTIN-------TTTVYGQEKYLVLKEILVRD------E 475 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~-~~~~t~~~~~~~~~~~i~-------~~~v~Gqe~~~~l~~~~~~~------v 475 (608)
+||+|+|++|||||||+++|+++.|.. .|.+|++.+.....+.++ -.+.+|+++|..++..++++ +
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 489999999999999999999999975 566666542212233333 33458999998888877765 7
Q ss_pred cccCCCCcc--ccccccc-----CCCCCcEEEEEeCCCCCcc----hhcccccHHHHHHHcCCCCceEEc--cCCCHHHH
Q psy3301 476 QLPVLLPVD--VDCDKYF-----STSKIPVMLVAGKSDMPRA----RQDYLMQPDIFCETHKLSPAHSFS--AANNDREV 542 (608)
Q Consensus 476 ~d~~l~~~~--~~~~~~~-----~~~~~p~ilVgnK~DL~~~----~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~ 542 (608)
|| +++.. +.+..|. ..+++|+++||||+|+.+. +++...++.++++.++++ .+++| ++.|++++
T Consensus 81 ~d--~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~gv~~l 157 (193)
T cd04118 81 YD--LTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQ-HFETSSKTGQNVDEL 157 (193)
T ss_pred EE--CCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCe-EEEEeCCCCCCHHHH
Confidence 88 76655 2222111 1357999999999998632 344456688899988876 78899 89999999
Q ss_pred HHHHHHHHcCC
Q psy3301 543 FVKLATMAAFP 553 (608)
Q Consensus 543 F~~l~~~a~~p 553 (608)
|..+++.+...
T Consensus 158 ~~~i~~~~~~~ 168 (193)
T cd04118 158 FQKVAEDFVSR 168 (193)
T ss_pred HHHHHHHHHHh
Confidence 99999988653
No 268
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.62 E-value=4.1e-15 Score=156.66 Aligned_cols=144 Identities=18% Similarity=0.135 Sum_probs=103.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCC-cCCCCCcceEecCccCC-CceeEEEEeCCCCCC----ChHHH---HHHHHhc
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPE-LVPSKAEEITIPPDVTP-EMVPTHIVDYSEVDQ----TVDEL---TEEIQKA 81 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~-~~~~~~~~~~i~~~~~~-~~~~~~i~Dt~G~~~----~~~~~---~~~~~~a 81 (608)
..|+|+|.||||||||+++|++.+... +++.++....+. .+.. .+..+.+||+||... ...+. ...+.++
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG-~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLG-VVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEE-EEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 379999999999999999999876432 244432222221 1222 256799999999642 11222 3345679
Q ss_pred CcEEEEEEcCCh---hhHHHHHHhHHHHHhhh-ccCCCCcEEEEEeCcCCCCCCC-------------cccCcccCcCHH
Q psy3301 82 HVICLVYSVVDD---ASIDRLSSHWLPFLRNC-LVDTCLPIVLVGNKVDLVDYST-------------VESSAKTLKNIS 144 (608)
Q Consensus 82 d~iilV~d~~~~---~s~~~~~~~~~~~i~~~-~~~~~~piilv~nK~Dl~~~~~-------------~e~SAk~~~~i~ 144 (608)
+++++|+|+++. ++++.+. .|...+... ....++|++||+||+|+..... +++||+++.|++
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~-~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~~~i~~iSA~tgeGI~ 316 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYE-KINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKEKLGPKVFPISALTGQGLD 316 (424)
T ss_pred CEEEEEEeCCccccCChHHHHH-HHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHHHhCCcEEEEeCCCCCCHH
Confidence 999999999864 6667765 677777643 1224789999999999854321 789999999999
Q ss_pred HHHHHHHHHHhC
Q psy3301 145 EMFYYAQKAVLH 156 (608)
Q Consensus 145 ~lf~~l~~~i~~ 156 (608)
++++++.+.+..
T Consensus 317 eL~~~L~~~l~~ 328 (424)
T PRK12297 317 ELLYAVAELLEE 328 (424)
T ss_pred HHHHHHHHHHHh
Confidence 999999888754
No 269
>PLN03118 Rab family protein; Provisional
Probab=99.61 E-value=1.3e-15 Score=147.88 Aligned_cols=142 Identities=17% Similarity=0.128 Sum_probs=108.0
Q ss_pred eEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCc-------eEecceEeCCcceeEeeeeccccc------c
Q psy3301 409 VYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPP-------YTINTTTVYGQEKYLVLKEILVRD------E 475 (608)
Q Consensus 409 ~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~-------~~i~~~~v~Gqe~~~~l~~~~~~~------v 475 (608)
.+||+|+|++|||||||+++|+++.+. .+.++.+.+..... +.+.-.+++|+++|..+++.++++ |
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv 92 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILV 92 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence 489999999999999999999998875 45555554111112 233344559999999888888776 7
Q ss_pred cccCCCCcc--cccc--------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHH
Q psy3301 476 QLPVLLPVD--VDCD--------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVF 543 (608)
Q Consensus 476 ~d~~l~~~~--~~~~--------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F 543 (608)
|| +++.+ ..+. .+....++|+++||||+||...+++..+++.+++++++++ ++++| ++.|++++|
T Consensus 93 ~D--~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~-~~e~SAk~~~~v~~l~ 169 (211)
T PLN03118 93 YD--VTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCL-FLECSAKTRENVEQCF 169 (211)
T ss_pred EE--CCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCE-EEEEeCCCCCCHHHHH
Confidence 88 77655 2222 1222356899999999999877777778889999999885 88999 899999999
Q ss_pred HHHHHHHcCCC
Q psy3301 544 VKLATMAAFPR 554 (608)
Q Consensus 544 ~~l~~~a~~p~ 554 (608)
..|+..+....
T Consensus 170 ~~l~~~~~~~~ 180 (211)
T PLN03118 170 EELALKIMEVP 180 (211)
T ss_pred HHHHHHHHhhh
Confidence 99999886543
No 270
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.61 E-value=2.2e-14 Score=141.08 Aligned_cols=194 Identities=16% Similarity=0.163 Sum_probs=127.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCc----CCCC--------------CcceEecCccCCCceeEEEEeCCCCCCChHH
Q psy3301 12 RILLLGDRHVGKTSLILSLVSEEFPEL----VPSK--------------AEEITIPPDVTPEMVPTHIVDYSEVDQTVDE 73 (608)
Q Consensus 12 kI~lvG~~~vGKTSLi~~l~~~~~~~~----~~~~--------------~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~ 73 (608)
+|+++|..|+|||||+++|+....... +... .+.......+...+..+++|||||+.+|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 589999999999999999987532211 0000 0001111223456788999999999999999
Q ss_pred HHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCCcccCcccCcCHHHHHHHHHHH
Q psy3301 74 LTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYSTVESSAKTLKNISEMFYYAQKA 153 (608)
Q Consensus 74 ~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~e~SAk~~~~i~~lf~~l~~~ 153 (608)
+...++.+|++++|+|+++...... . .|...+.. .++|+++++||+|+. +....+++..+...
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~~-~-~~~~~~~~----~~~P~iivvNK~D~~-----------~a~~~~~~~~i~~~ 143 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQT-R-ILWRLLRK----LNIPTIIFVNKIDRA-----------GADLEKVYQEIKEK 143 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHHH-H-HHHHHHHH----cCCCEEEEEECcccc-----------CCCHHHHHHHHHHH
Confidence 9999999999999999998755432 2 44444442 378999999999964 34567888888887
Q ss_pred HhCCCCCccccc-------cccChHHHHHHHHHHHHhccCC------CCCccCHHHHHHHhhc----------ccCCCCC
Q psy3301 154 VLHPMAPIYISD-------KQELTPECIKALTRIFKVCDLD------NDNLLSDKELNAFQRR----------CFDAPLS 210 (608)
Q Consensus 154 i~~~~~~l~~~~-------~~~l~~~~~~~L~~~f~~~D~d------~dg~l~~~El~~~~~~----------~~g~~~~ 210 (608)
+-....|++.+. ...... +|.+.....|.. .++.++.+||...+++ ++|..+.
T Consensus 144 ~~~~~~~~~~p~~~~~~~~~~~~~~----~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~ 219 (237)
T cd04168 144 LSSDIVPMQKVGLAPNICETNEIDD----EFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALK 219 (237)
T ss_pred HCCCeEEEECCcEeeeeeeeeeccH----HHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccC
Confidence 755544443221 111222 222222111111 2578898888888766 3477777
Q ss_pred hhhHHHHHHHHHHhcC
Q psy3301 211 RDSLEDVKIVIRKNIN 226 (608)
Q Consensus 211 ~~el~~i~~~~~~~~~ 226 (608)
...++.+++.+....|
T Consensus 220 ~~Gv~~ll~~~~~~~p 235 (237)
T cd04168 220 GIGIEELLEGITKLFP 235 (237)
T ss_pred CcCHHHHHHHHHHhcC
Confidence 7778888887766654
No 271
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.61 E-value=1.5e-15 Score=140.98 Aligned_cols=138 Identities=18% Similarity=0.257 Sum_probs=104.0
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEe-------cceEeCCcceeEeeeeccccc------cc
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTI-------NTTTVYGQEKYLVLKEILVRD------EQ 476 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i-------~~~~v~Gqe~~~~l~~~~~~~------v~ 476 (608)
+||+|+|++|||||||+++++++.+...+.++.+.+.....+.+ +-.+.+|+++|..++..++++ +|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 81 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVY 81 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEE
Confidence 79999999999999999999999998766666654111122222 223458998888777777765 67
Q ss_pred ccCCCCcc--ccccc------ccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHHHH
Q psy3301 477 LPVLLPVD--VDCDK------YFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFVKL 546 (608)
Q Consensus 477 d~~l~~~~--~~~~~------~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~~l 546 (608)
| .++.+ ..+.. ....+++|+++|+||+|+...+.+..++..+++++++++ ++++| ++.|++++|.+|
T Consensus 82 d--~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~l~~~l 158 (163)
T cd01860 82 D--ITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLL-FFETSAKTGENVNELFTEI 158 (163)
T ss_pred E--CcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHH
Confidence 7 65554 22221 222378999999999999876666777889999999965 89999 899999999999
Q ss_pred HHHH
Q psy3301 547 ATMA 550 (608)
Q Consensus 547 ~~~a 550 (608)
++.+
T Consensus 159 ~~~l 162 (163)
T cd01860 159 AKKL 162 (163)
T ss_pred HHHh
Confidence 9865
No 272
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.60 E-value=5.2e-15 Score=157.67 Aligned_cols=145 Identities=18% Similarity=0.138 Sum_probs=101.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHcCCCCCc-CCCCCcceEecCccCCCceeEEEEeCCCCCCC----hH---HHHHHHHhc
Q psy3301 10 NVRILLLGDRHVGKTSLILSLVSEEFPEL-VPSKAEEITIPPDVTPEMVPTHIVDYSEVDQT----VD---ELTEEIQKA 81 (608)
Q Consensus 10 ~~kI~lvG~~~vGKTSLi~~l~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~----~~---~~~~~~~~a 81 (608)
...|+|||.||||||||+++|++...... ++.++ .......+...+..+.+|||||.... .. .....+..+
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTT-l~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhiera 237 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTT-LVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERC 237 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCccc-ccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence 46899999999999999999998765432 44332 22222234445578999999996321 11 234457789
Q ss_pred CcEEEEEEcCCh----hhHHHHHHhHHHHHhhhc----------cCCCCcEEEEEeCcCCCCCCC---------------
Q psy3301 82 HVICLVYSVVDD----ASIDRLSSHWLPFLRNCL----------VDTCLPIVLVGNKVDLVDYST--------------- 132 (608)
Q Consensus 82 d~iilV~d~~~~----~s~~~~~~~~~~~i~~~~----------~~~~~piilv~nK~Dl~~~~~--------------- 132 (608)
|++++|+|+++. +.++.+. .|...+.... ...+.|+|||+||+|+.+...
T Consensus 238 dvLv~VVD~s~~e~~rdp~~d~~-~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~g~~ 316 (500)
T PRK12296 238 AVLVHVVDCATLEPGRDPLSDID-ALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEARGWP 316 (500)
T ss_pred CEEEEEECCcccccccCchhhHH-HHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHcCCe
Confidence 999999999853 3444443 4444443221 234689999999999975321
Q ss_pred -cccCcccCcCHHHHHHHHHHHHhC
Q psy3301 133 -VESSAKTLKNISEMFYYAQKAVLH 156 (608)
Q Consensus 133 -~e~SAk~~~~i~~lf~~l~~~i~~ 156 (608)
+++||+++.|++++++++.+.+..
T Consensus 317 Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 317 VFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 899999999999999999988744
No 273
>KOG0071|consensus
Probab=99.60 E-value=7.4e-15 Score=125.10 Aligned_cols=144 Identities=19% Similarity=0.195 Sum_probs=122.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEE
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICL 86 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iil 86 (608)
..+.++|+.+|-.++||||++..|..+.....+|++.-.. ..++..++.+++||..|+...+..|..|+....++|+
T Consensus 14 ~~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnv---etVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIF 90 (180)
T KOG0071|consen 14 GNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNV---ETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 90 (180)
T ss_pred CcccceEEEEecccCCceehhhHHhcCCCcccccccceeE---EEEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence 3468999999999999999999999888665455432221 1346678899999999999999999999999999999
Q ss_pred EEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC--------------------cccCcccCcCHHHH
Q psy3301 87 VYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST--------------------VESSAKTLKNISEM 146 (608)
Q Consensus 87 V~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------------------~e~SAk~~~~i~~l 146 (608)
|.|..+.+..+.++..+...+.. ....+.|++|.+||.|++.... .+|||.+|.|+.|-
T Consensus 91 V~Dsa~~dr~eeAr~ELh~ii~~-~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eg 169 (180)
T KOG0071|consen 91 VVDSADRDRIEEARNELHRIIND-REMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEG 169 (180)
T ss_pred EEeccchhhHHHHHHHHHHHhCC-HhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeeccccccchhHHHH
Confidence 99999999999999888887776 5667889999999999987654 78999999999999
Q ss_pred HHHHHHHH
Q psy3301 147 FYYAQKAV 154 (608)
Q Consensus 147 f~~l~~~i 154 (608)
|.++.+..
T Consensus 170 lswlsnn~ 177 (180)
T KOG0071|consen 170 LSWLSNNL 177 (180)
T ss_pred HHHHHhhc
Confidence 99988764
No 274
>KOG1191|consensus
Probab=99.60 E-value=1.7e-14 Score=147.93 Aligned_cols=197 Identities=26% Similarity=0.258 Sum_probs=141.3
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHHcCCCCCc-CCCCCcceEecCccCCCceeEEEEeCCCCCC-ChH--------HHH
Q psy3301 6 SLRRNVRILLLGDRHVGKTSLILSLVSEEFPEL-VPSKAEEITIPPDVTPEMVPTHIVDYSEVDQ-TVD--------ELT 75 (608)
Q Consensus 6 ~~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~-~~~--------~~~ 75 (608)
..+..++|+|+|.||||||||+|.|..++.... ..+.++++.+...++..++++.|.||+|..+ ... ...
T Consensus 264 ~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~ 343 (531)
T KOG1191|consen 264 RLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERAR 343 (531)
T ss_pred HhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHH
Confidence 456789999999999999999999999987764 4445688999999999999999999999655 111 125
Q ss_pred HHHHhcCcEEEEEEc--CChhhHHHHHHhHHHHHhhh-----ccCCCCcEEEEEeCcCCCCCCC----------------
Q psy3301 76 EEIQKAHVICLVYSV--VDDASIDRLSSHWLPFLRNC-----LVDTCLPIVLVGNKVDLVDYST---------------- 132 (608)
Q Consensus 76 ~~~~~ad~iilV~d~--~~~~s~~~~~~~~~~~i~~~-----~~~~~~piilv~nK~Dl~~~~~---------------- 132 (608)
..++.||++++|+|+ ++-++-..+. ..+...... ....+.|++++.||+|+.....
T Consensus 344 k~~~~advi~~vvda~~~~t~sd~~i~-~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~ 422 (531)
T KOG1191|consen 344 KRIERADVILLVVDAEESDTESDLKIA-RILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRS 422 (531)
T ss_pred HHHhhcCEEEEEecccccccccchHHH-HHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCc
Confidence 568899999999999 4434433333 222322221 2334579999999999987622
Q ss_pred -----cccCcccCcCHHHHHHHHHHHHhCCC----CCcc---ccccccChHHHHH-HHHHHHHhccCCCCCccCHHHHHH
Q psy3301 133 -----VESSAKTLKNISEMFYYAQKAVLHPM----APIY---ISDKQELTPECIK-ALTRIFKVCDLDNDNLLSDKELNA 199 (608)
Q Consensus 133 -----~e~SAk~~~~i~~lf~~l~~~i~~~~----~~l~---~~~~~~l~~~~~~-~L~~~f~~~D~d~dg~l~~~El~~ 199 (608)
.++|+++++|+.++...+.+.+.... .+.+ ..+.+++...|.. ++.+.|..-+...|-.+..++|+-
T Consensus 423 ~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~~~~s~~~t~~~~r~~~~~r~~~~~~l~~~~~~k~~~~D~~la~~~lR~ 502 (531)
T KOG1191|consen 423 VFPIVVEVSCTTKEGCERLSTALLNIVERLVVSPHSAPPTLSQKRIKELLRTCAAPELERRFLAKQLKEDIDLAGEPLRL 502 (531)
T ss_pred ccceEEEeeechhhhHHHHHHHHHHHHHHhhcCCCCCchhhcchhHHHHHHhhhhhhHHHHHHhhhcccchhhccchHHH
Confidence 56999999999999999888774322 2211 1222334444444 678888777777777777788777
Q ss_pred Hhhc
Q psy3301 200 FQRR 203 (608)
Q Consensus 200 ~~~~ 203 (608)
+++.
T Consensus 503 a~~~ 506 (531)
T KOG1191|consen 503 AQRS 506 (531)
T ss_pred HHhh
Confidence 7665
No 275
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.60 E-value=5.2e-15 Score=162.57 Aligned_cols=139 Identities=17% Similarity=0.139 Sum_probs=100.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCC-CceeEEEEeCCCCCCChHHHHHHHHhcCcEEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTP-EMVPTHIVDYSEVDQTVDELTEEIQKAHVICL 86 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iil 86 (608)
.+..+|+++|+.++|||||+++|.+..+.....+..+...-...+.. ....+.||||||++.|...+...+..+|++++
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaIL 164 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVL 164 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence 35679999999999999999999998776543222221111111221 22378999999999999988889999999999
Q ss_pred EEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCC-----------------------CcccCcccCcCH
Q psy3301 87 VYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYS-----------------------TVESSAKTLKNI 143 (608)
Q Consensus 87 V~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-----------------------~~e~SAk~~~~i 143 (608)
|+|+++...-+... .| ... ...++|+++++||+|+.... .+++||++|.|+
T Consensus 165 VVda~dgv~~qT~e-~i-~~~----~~~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI 238 (587)
T TIGR00487 165 VVAADDGVMPQTIE-AI-SHA----KAANVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGI 238 (587)
T ss_pred EEECCCCCCHhHHH-HH-HHH----HHcCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCCh
Confidence 99998743222221 12 112 23478999999999986421 078999999999
Q ss_pred HHHHHHHHH
Q psy3301 144 SEMFYYAQK 152 (608)
Q Consensus 144 ~~lf~~l~~ 152 (608)
+++++++..
T Consensus 239 ~eLl~~I~~ 247 (587)
T TIGR00487 239 DELLDMILL 247 (587)
T ss_pred HHHHHhhhh
Confidence 999998864
No 276
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.60 E-value=1.1e-14 Score=152.61 Aligned_cols=144 Identities=15% Similarity=0.118 Sum_probs=103.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCc-CCCCCcceEecCccCCC-ceeEEEEeCCCCCCC-------hHHHHHHHHhc
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPEL-VPSKAEEITIPPDVTPE-MVPTHIVDYSEVDQT-------VDELTEEIQKA 81 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~~-~~~~~~~~~i~~~~~~~-~~~~~i~Dt~G~~~~-------~~~~~~~~~~a 81 (608)
-.|+|+|.||||||||+|+|++.+.... ++.+ +...+...+... ...+.++||||...- .......+..+
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~T-T~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra 238 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFT-TLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERC 238 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCC-ccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence 3799999999999999999998764332 3333 322222223322 356999999997532 12234568899
Q ss_pred CcEEEEEEcC---ChhhHHHHHHhHHHHHhhh-ccCCCCcEEEEEeCcCCCCCCC------------------cccCccc
Q psy3301 82 HVICLVYSVV---DDASIDRLSSHWLPFLRNC-LVDTCLPIVLVGNKVDLVDYST------------------VESSAKT 139 (608)
Q Consensus 82 d~iilV~d~~---~~~s~~~~~~~~~~~i~~~-~~~~~~piilv~nK~Dl~~~~~------------------~e~SAk~ 139 (608)
|++++|+|++ +.+.++.+. .|+..+... ....+.|++||+||+|+..... +++||++
T Consensus 239 dvlL~VVD~s~~~~~d~~e~~~-~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~t 317 (390)
T PRK12298 239 RVLLHLIDIAPIDGSDPVENAR-IIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAAS 317 (390)
T ss_pred CEEEEEeccCcccccChHHHHH-HHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence 9999999988 455666665 677776642 1224689999999999864321 6899999
Q ss_pred CcCHHHHHHHHHHHHhC
Q psy3301 140 LKNISEMFYYAQKAVLH 156 (608)
Q Consensus 140 ~~~i~~lf~~l~~~i~~ 156 (608)
+.||+++++.+.+.+..
T Consensus 318 g~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 318 GLGVKELCWDLMTFIEE 334 (390)
T ss_pred CcCHHHHHHHHHHHhhh
Confidence 99999999999988743
No 277
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.59 E-value=1.5e-15 Score=140.56 Aligned_cols=137 Identities=20% Similarity=0.206 Sum_probs=102.3
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceE-------ecceEeCCcceeEeeeeccccc------cc
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYT-------INTTTVYGQEKYLVLKEILVRD------EQ 476 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~-------i~~~~v~Gqe~~~~l~~~~~~~------v~ 476 (608)
+||+++|++|||||||+++++++.+...+.++.+.+.+...+. +.-.+++|+++|..+...+++. +|
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 4899999999999999999999999877766665422222222 2333448888887776666665 78
Q ss_pred ccCCCCcc--cccccc------cCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHHHH
Q psy3301 477 LPVLLPVD--VDCDKY------FSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFVKL 546 (608)
Q Consensus 477 d~~l~~~~--~~~~~~------~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~~l 546 (608)
| +++.+ ..++.+ ....++|+++||||+|+.+.+++..++...+++..+++ ++++| ++.|++++|..|
T Consensus 81 d--~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~l~~~i 157 (161)
T cd01861 81 D--ITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAM-FIETSAKAGHNVKELFRKI 157 (161)
T ss_pred E--CcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCE-EEEEeCCCCCCHHHHHHHH
Confidence 8 66654 222211 12246999999999999766777778899999998876 88999 899999999999
Q ss_pred HHH
Q psy3301 547 ATM 549 (608)
Q Consensus 547 ~~~ 549 (608)
++.
T Consensus 158 ~~~ 160 (161)
T cd01861 158 ASA 160 (161)
T ss_pred HHh
Confidence 874
No 278
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.59 E-value=2.6e-15 Score=140.61 Aligned_cols=142 Identities=18% Similarity=0.224 Sum_probs=104.4
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEe-------cceEeCCcceeEeeeeccccc------cc
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTI-------NTTTVYGQEKYLVLKEILVRD------EQ 476 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i-------~~~~v~Gqe~~~~l~~~~~~~------v~ 476 (608)
+||+|+|++|||||||+++++++.+...+.++++.+.....+.+ +-.+++|++.|..++..+++. +|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988777666654221122222 234458888888887777665 67
Q ss_pred ccCCCCcc--cccccc-------c---CCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHH
Q psy3301 477 LPVLLPVD--VDCDKY-------F---STSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREV 542 (608)
Q Consensus 477 d~~l~~~~--~~~~~~-------~---~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~ 542 (608)
| +.+.+ +....| . ...++|+++||||+|+...+....++.+.+++..+..+++++| ++.|++++
T Consensus 81 d--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 158 (172)
T cd01862 81 D--VTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQA 158 (172)
T ss_pred E--CCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHH
Confidence 7 55543 212111 1 1247999999999999865555667788899998855689999 89999999
Q ss_pred HHHHHHHHcCC
Q psy3301 543 FVKLATMAAFP 553 (608)
Q Consensus 543 F~~l~~~a~~p 553 (608)
|..+++.++.-
T Consensus 159 ~~~i~~~~~~~ 169 (172)
T cd01862 159 FETIARKALEQ 169 (172)
T ss_pred HHHHHHHHHhc
Confidence 99999987654
No 279
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.59 E-value=1.4e-14 Score=156.55 Aligned_cols=140 Identities=24% Similarity=0.250 Sum_probs=103.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCC-cCCCCCcceEecCccCCCceeEEEEeCCCCCCChH-----------HHHH
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPE-LVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVD-----------ELTE 76 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~~~ 76 (608)
..++|+|+|.+|||||||+++|++..... ...+..+...+...+...+..+.+|||||...... ....
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~ 251 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLK 251 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHH
Confidence 56999999999999999999999876432 22233344444444445667789999999643211 1234
Q ss_pred HHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC--------------------cccC
Q psy3301 77 EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST--------------------VESS 136 (608)
Q Consensus 77 ~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------------------~e~S 136 (608)
.++.+|++|+|+|++++.+.+... +...+.. .+.|+++|+||+|+..... +++|
T Consensus 252 ~~~~ad~~ilViD~~~~~~~~~~~--i~~~~~~----~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~S 325 (435)
T PRK00093 252 AIERADVVLLVIDATEGITEQDLR--IAGLALE----AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFIS 325 (435)
T ss_pred HHHHCCEEEEEEeCCCCCCHHHHH--HHHHHHH----cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEe
Confidence 688999999999999987776653 3444432 3689999999999974321 8899
Q ss_pred cccCcCHHHHHHHHHHHH
Q psy3301 137 AKTLKNISEMFYYAQKAV 154 (608)
Q Consensus 137 Ak~~~~i~~lf~~l~~~i 154 (608)
|++|.|+++++..+.+..
T Consensus 326 A~~~~gv~~l~~~i~~~~ 343 (435)
T PRK00093 326 ALTGQGVDKLLEAIDEAY 343 (435)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999887755
No 280
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.59 E-value=9.1e-15 Score=164.24 Aligned_cols=137 Identities=19% Similarity=0.177 Sum_probs=102.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEE
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICL 86 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iil 86 (608)
..+...|+|+|+.++|||||+++|.+..+.....+..+...-...+...+..++||||||++.|...+...++.+|++|+
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaIL 366 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVL 366 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence 34667899999999999999999998776544222211111111233345789999999999999999889999999999
Q ss_pred EEEcCCh---hhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------------cccCcccC
Q psy3301 87 VYSVVDD---ASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------------VESSAKTL 140 (608)
Q Consensus 87 V~d~~~~---~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------------~e~SAk~~ 140 (608)
|||+++. ++.+.+. .. ...++|+|||+||+|+..... +++||++|
T Consensus 367 VVdAddGv~~qT~e~i~-----~a----~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG 437 (787)
T PRK05306 367 VVAADDGVMPQTIEAIN-----HA----KAAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTG 437 (787)
T ss_pred EEECCCCCCHhHHHHHH-----HH----HhcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCC
Confidence 9999984 4443332 12 234789999999999964210 88999999
Q ss_pred cCHHHHHHHHHH
Q psy3301 141 KNISEMFYYAQK 152 (608)
Q Consensus 141 ~~i~~lf~~l~~ 152 (608)
.||+++++++..
T Consensus 438 ~GI~eLle~I~~ 449 (787)
T PRK05306 438 EGIDELLEAILL 449 (787)
T ss_pred CCchHHHHhhhh
Confidence 999999998764
No 281
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.58 E-value=3.5e-15 Score=138.44 Aligned_cols=137 Identities=17% Similarity=0.234 Sum_probs=101.7
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEec-------ceEeCCcceeEeeeeccccc------cc
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTIN-------TTTVYGQEKYLVLKEILVRD------EQ 476 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~-------~~~v~Gqe~~~~l~~~~~~~------v~ 476 (608)
|||+++|++|||||||+++++.+.|...+.++... .+.....++ -++.+|++.|..++..+.+. +|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKAD-SYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchh-hEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 58999999999999999999999998877655443 222222222 33448888887777766665 56
Q ss_pred ccCCCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHHH
Q psy3301 477 LPVLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFVK 545 (608)
Q Consensus 477 d~~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~~ 545 (608)
| +++.+ ..+. +.....++|+++|+||+|+...++....+...++++++++ ++++| ++.|++++|..
T Consensus 80 d--~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l~~~ 156 (164)
T cd04139 80 S--ITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVP-YVETSAKTRQNVEKAFYD 156 (164)
T ss_pred E--CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCe-EEEeeCCCCCCHHHHHHH
Confidence 6 55543 2222 1122468999999999999875556667788899999875 89999 89999999999
Q ss_pred HHHHH
Q psy3301 546 LATMA 550 (608)
Q Consensus 546 l~~~a 550 (608)
+++..
T Consensus 157 l~~~~ 161 (164)
T cd04139 157 LVREI 161 (164)
T ss_pred HHHHH
Confidence 99765
No 282
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.58 E-value=1.6e-14 Score=141.81 Aligned_cols=142 Identities=19% Similarity=0.214 Sum_probs=97.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCC-cCCCCCcceEecCccCCCceeEEEEeCCCCCCCh-------HHHHHHHHhcCc
Q psy3301 12 RILLLGDRHVGKTSLILSLVSEEFPE-LVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTV-------DELTEEIQKAHV 83 (608)
Q Consensus 12 kI~lvG~~~vGKTSLi~~l~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~ad~ 83 (608)
+|+++|++|||||||+++|.+..... +++.++ ....+..+...+..+++|||||..... ......++.+|+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT-~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~ 80 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTT-LTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADL 80 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCcc-ccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCE
Confidence 78999999999999999999876332 233322 112233344467889999999975332 233467899999
Q ss_pred EEEEEEcCChh-hHHHHHHhHH----------------------------------------HHHhhh------------
Q psy3301 84 ICLVYSVVDDA-SIDRLSSHWL----------------------------------------PFLRNC------------ 110 (608)
Q Consensus 84 iilV~d~~~~~-s~~~~~~~~~----------------------------------------~~i~~~------------ 110 (608)
+++|+|++++. ..+.+...+. ..+++.
T Consensus 81 il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~ 160 (233)
T cd01896 81 ILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRED 160 (233)
T ss_pred EEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccC
Confidence 99999998765 3333321110 001000
Q ss_pred -----------ccCCCCcEEEEEeCcCCCCCCC----------cccCcccCcCHHHHHHHHHHHH
Q psy3301 111 -----------LVDTCLPIVLVGNKVDLVDYST----------VESSAKTLKNISEMFYYAQKAV 154 (608)
Q Consensus 111 -----------~~~~~~piilv~nK~Dl~~~~~----------~e~SAk~~~~i~~lf~~l~~~i 154 (608)
.+...+|+++|+||+|+..... +++||++|.|++++|+.+.+.+
T Consensus 161 ~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 161 ITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELDLLARQPNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCHHHHHHHHhCCceEeeEEEEEECccCCCHHHHHHHhcCCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 1123469999999999975432 8899999999999999998865
No 283
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.58 E-value=1.5e-15 Score=140.91 Aligned_cols=139 Identities=20% Similarity=0.253 Sum_probs=102.6
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCc-------eEecceEeCCcceeEeeeeccccc------cc
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPP-------YTINTTTVYGQEKYLVLKEILVRD------EQ 476 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~-------~~i~~~~v~Gqe~~~~l~~~~~~~------v~ 476 (608)
+||+|+|++|||||||+++++++.+...+.++.+.+..... +.++-++.+|+++|..+...+++. +|
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999999887766555554111111 223333447877777666666654 67
Q ss_pred ccCCCCcc--cccccc------cCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHHHH
Q psy3301 477 LPVLLPVD--VDCDKY------FSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFVKL 546 (608)
Q Consensus 477 d~~l~~~~--~~~~~~------~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~~l 546 (608)
| +++.. +.+.+| +..+++|+++|+||+|+...+++..+++.+++++++++ ++++| ++.|++++|..|
T Consensus 81 d--~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~~i~~l~~~i 157 (164)
T smart00175 81 D--ITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLP-FFETSAKTNTNVEEAFEEL 157 (164)
T ss_pred E--CCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCe-EEEEeCCCCCCHHHHHHHH
Confidence 7 66544 222222 22368999999999999876666777899999999986 89999 799999999999
Q ss_pred HHHHc
Q psy3301 547 ATMAA 551 (608)
Q Consensus 547 ~~~a~ 551 (608)
++.+.
T Consensus 158 ~~~~~ 162 (164)
T smart00175 158 AREIL 162 (164)
T ss_pred HHHHh
Confidence 98763
No 284
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.58 E-value=2.2e-15 Score=144.24 Aligned_cols=137 Identities=14% Similarity=0.158 Sum_probs=98.9
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCC------------CceEecceEeCCcceeEeeeeccccc---
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECD------------PPYTINTTTVYGQEKYLVLKEILVRD--- 474 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~------------~~~~i~~~~v~Gqe~~~~l~~~~~~~--- 474 (608)
+||+++|++|||||||+++|+++.|...+.+|++.+... ..+.++-.+++|+++|..++..++++
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999998888777641111 12333444559999999999999987
Q ss_pred ---ccccCCCCcc--cccccc-------------------------cCCCCCcEEEEEeCCCCCcchhcccc----cHHH
Q psy3301 475 ---EQLPVLLPVD--VDCDKY-------------------------FSTSKIPVMLVAGKSDMPRARQDYLM----QPDI 520 (608)
Q Consensus 475 ---v~d~~l~~~~--~~~~~~-------------------------~~~~~~p~ilVgnK~DL~~~~~~~~~----~~~~ 520 (608)
||| +++.+ +++..| ....++|++|||||+||.+.|.++.+ .+..
T Consensus 81 iIlVyD--vtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ 158 (202)
T cd04102 81 IILVHD--LTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGF 158 (202)
T ss_pred EEEEEE--CcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhh
Confidence 899 88876 444322 12357999999999999876655444 3567
Q ss_pred HHHHcCCCCceEEc------------cCCCHHHHHHHHHHH
Q psy3301 521 FCETHKLSPAHSFS------------AANNDREVFVKLATM 549 (608)
Q Consensus 521 ~~~~~~~~~~~~~S------------~~~~v~e~F~~l~~~ 549 (608)
+|++.+++ .++.+ ....+...|+.+++.
T Consensus 159 ia~~~~~~-~i~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (202)
T cd04102 159 VAEQGNAE-EINLNCTNGRLLAAGSSDAVKLSRFFDKVIEK 198 (202)
T ss_pred HHHhcCCc-eEEEecCCcccccCCCccHHHHHHHHHHHHHh
Confidence 89999997 55544 122345666666654
No 285
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.58 E-value=1.4e-14 Score=138.93 Aligned_cols=140 Identities=17% Similarity=0.160 Sum_probs=94.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCC----------CChHHHHHH
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVD----------QTVDELTEE 77 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~~ 77 (608)
...++|+|+|++|||||||+++|++..+...+.+.... +....+...+..+.||||||.. .+......+
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~-t~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 100 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGR-TQLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEY 100 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCc-eeEEEEEecCCeEEEeCCCCCCCcCCCchHHHHHHHHHHHH
Confidence 34689999999999999999999998754433332211 1111111123679999999953 223334555
Q ss_pred HHhc---CcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-------------------ccc
Q psy3301 78 IQKA---HVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-------------------VES 135 (608)
Q Consensus 78 ~~~a---d~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-------------------~e~ 135 (608)
++.+ +++++|+|++++.+.... .+...+. ..++|+++++||+|+.+... +++
T Consensus 101 ~~~~~~~~~~~~v~d~~~~~~~~~~--~i~~~l~----~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~ 174 (196)
T PRK00454 101 LRTRENLKGVVLLIDSRHPLKELDL--QMIEWLK----EYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILF 174 (196)
T ss_pred HHhCccceEEEEEEecCCCCCHHHH--HHHHHHH----HcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEE
Confidence 6554 678888998876544332 1223333 23689999999999875321 889
Q ss_pred CcccCcCHHHHHHHHHHHH
Q psy3301 136 SAKTLKNISEMFYYAQKAV 154 (608)
Q Consensus 136 SAk~~~~i~~lf~~l~~~i 154 (608)
||+++.|++++++.+.+.+
T Consensus 175 Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 175 SSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred EcCCCCCHHHHHHHHHHHh
Confidence 9999999999999987765
No 286
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.58 E-value=3.4e-15 Score=138.15 Aligned_cols=138 Identities=20% Similarity=0.269 Sum_probs=102.1
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCce-------EecceEeCCcceeEeeeeccccc------cc
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPY-------TINTTTVYGQEKYLVLKEILVRD------EQ 476 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~-------~i~~~~v~Gqe~~~~l~~~~~~~------v~ 476 (608)
+||+++|++|||||||+++|+++.+...+.++.+.......+ .++-.+.+|++.|..+++.++++ +|
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 589999999999999999999999877665444331111112 23334448888888888777665 77
Q ss_pred ccCCCCcc--cccc------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHHHH
Q psy3301 477 LPVLLPVD--VDCD------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFVKL 546 (608)
Q Consensus 477 d~~l~~~~--~~~~------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~~l 546 (608)
| +++.+ .... +.....++|+++|+||+|+...+++..++..++++..++. .+++| ++.|++++|..|
T Consensus 81 d--~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~gi~~~~~~l 157 (162)
T cd04123 81 D--ITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAK-HFETSAKTGKGIEELFLSL 157 (162)
T ss_pred E--CCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCE-EEEEeCCCCCCHHHHHHHH
Confidence 7 66655 2222 1122347999999999999877777677788899988886 78888 899999999999
Q ss_pred HHHH
Q psy3301 547 ATMA 550 (608)
Q Consensus 547 ~~~a 550 (608)
++.+
T Consensus 158 ~~~~ 161 (162)
T cd04123 158 AKRM 161 (162)
T ss_pred HHHh
Confidence 8865
No 287
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.58 E-value=1e-14 Score=165.76 Aligned_cols=140 Identities=22% Similarity=0.196 Sum_probs=102.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCC--CcCCCCCcceEecCccCCCceeEEEEeCCCCCC----------ChHH-HH
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFP--ELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQ----------TVDE-LT 75 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~----------~~~~-~~ 75 (608)
..+||+++|.+|||||||+++|++.++. .+.+++ +...+...+...+..+.+|||+|..+ +... ..
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gt-T~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~ 527 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGT-TRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQ 527 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCC-CcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHH
Confidence 3589999999999999999999998753 333433 33333333344556788999999642 1111 13
Q ss_pred HHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC--------------------ccc
Q psy3301 76 EEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST--------------------VES 135 (608)
Q Consensus 76 ~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------------------~e~ 135 (608)
..++.+|++++|+|+++..+++... +...+.. .++|+++|+||+|+.+... +++
T Consensus 528 ~~i~~advvilViDat~~~s~~~~~--i~~~~~~----~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~i 601 (712)
T PRK09518 528 AAIERSELALFLFDASQPISEQDLK--VMSMAVD----AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNL 601 (712)
T ss_pred HHhhcCCEEEEEEECCCCCCHHHHH--HHHHHHH----cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEE
Confidence 4478999999999999998888765 3344432 4689999999999975321 578
Q ss_pred CcccCcCHHHHHHHHHHHHh
Q psy3301 136 SAKTLKNISEMFYYAQKAVL 155 (608)
Q Consensus 136 SAk~~~~i~~lf~~l~~~i~ 155 (608)
||++|.|+++++..+.+...
T Consensus 602 SAktg~gv~~L~~~i~~~~~ 621 (712)
T PRK09518 602 SAKTGWHTNRLAPAMQEALE 621 (712)
T ss_pred ECCCCCCHHHHHHHHHHHHH
Confidence 99999999999999877653
No 288
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.58 E-value=1.3e-14 Score=139.97 Aligned_cols=139 Identities=19% Similarity=0.206 Sum_probs=94.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCc-----cC---------------------------C----
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPD-----VT---------------------------P---- 54 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~-----~~---------------------------~---- 54 (608)
++|+++|+.|+|||||+.++.+..............++... .. .
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 57999999999999999999765211100000000011000 00 0
Q ss_pred CceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEcCCh----hhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCC
Q psy3301 55 EMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSVVDD----ASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDY 130 (608)
Q Consensus 55 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~~~----~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 130 (608)
....+.||||||++.+...+...+..+|++++|+|++++ ++++.+. .| .. . ...|+++|+||+|+...
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~-~~----~~--~-~~~~iiivvNK~Dl~~~ 152 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLA-AL----EI--M-GLKHIIIVQNKIDLVKE 152 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHH-HH----HH--c-CCCcEEEEEEchhccCH
Confidence 126789999999998888888888899999999999873 3333332 22 21 1 12479999999999752
Q ss_pred CC----------------------cccCcccCcCHHHHHHHHHHHHhCC
Q psy3301 131 ST----------------------VESSAKTLKNISEMFYYAQKAVLHP 157 (608)
Q Consensus 131 ~~----------------------~e~SAk~~~~i~~lf~~l~~~i~~~ 157 (608)
.. +++||++|.|++++|+++.+.+..|
T Consensus 153 ~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~ 201 (203)
T cd01888 153 EQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTP 201 (203)
T ss_pred HHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCC
Confidence 11 7899999999999999998876543
No 289
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.58 E-value=8.9e-15 Score=138.24 Aligned_cols=128 Identities=20% Similarity=0.200 Sum_probs=84.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCC--cceEecCccCCCceeEEEEeCCCCCC----------ChHHHH
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKA--EEITIPPDVTPEMVPTHIVDYSEVDQ----------TVDELT 75 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~ 75 (608)
.+..+|+|+|++|+|||||++++++..+...+.+.. +........+ -.+.+|||||... +.....
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 92 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN---DGFRLVDLPGYGYAKVSKEEKEKWQKLIE 92 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC---CcEEEEeCCCCccccCChhHHHHHHHHHH
Confidence 567899999999999999999999986443322221 1111111111 2589999999532 222234
Q ss_pred HHHHh---cCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC--------------------
Q psy3301 76 EEIQK---AHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-------------------- 132 (608)
Q Consensus 76 ~~~~~---ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-------------------- 132 (608)
.+++. ++++++|+|++++.+..... +...+.. .++|+++|+||+|+.....
T Consensus 93 ~~l~~~~~~~~ii~vvd~~~~~~~~~~~--~~~~~~~----~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~ 166 (179)
T TIGR03598 93 EYLEKRENLKGVVLLMDIRHPLKELDLE--MLEWLRE----RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPS 166 (179)
T ss_pred HHHHhChhhcEEEEEecCCCCCCHHHHH--HHHHHHH----cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCc
Confidence 45554 57999999998865555542 3344432 3789999999999864321
Q ss_pred -cccCcccCcCHH
Q psy3301 133 -VESSAKTLKNIS 144 (608)
Q Consensus 133 -~e~SAk~~~~i~ 144 (608)
+++||++|+|++
T Consensus 167 v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 167 VQLFSSLKKTGID 179 (179)
T ss_pred eEEEECCCCCCCC
Confidence 788888888763
No 290
>KOG4252|consensus
Probab=99.57 E-value=4.5e-16 Score=137.82 Aligned_cols=142 Identities=17% Similarity=0.122 Sum_probs=120.0
Q ss_pred ceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecceEe-------CCcceeEeeeeccccc------
Q psy3301 408 NVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINTTTV-------YGQEKYLVLKEILVRD------ 474 (608)
Q Consensus 408 ~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~~~v-------~Gqe~~~~l~~~~~~~------ 474 (608)
-.+|++|+|..+|||||+++|||.+-|...|..|+++++....+.++..++ +|||.|-.++..|||+
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vL 98 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVL 98 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEE
Confidence 469999999999999999999999999999999998855556666666554 9999999999999998
Q ss_pred ccccCCCCcc--ccccccc-----CCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHHH
Q psy3301 475 EQLPVLLPVD--VDCDKYF-----STSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFVK 545 (608)
Q Consensus 475 v~d~~l~~~~--~~~~~~~-----~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~~ 545 (608)
||+ .+++. +....|+ ....+|.|+|-||+||.++.++...+++.+++++++. .+.+| ...||.++|..
T Consensus 99 VFS--TTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~R-lyRtSvked~NV~~vF~Y 175 (246)
T KOG4252|consen 99 VFS--TTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKR-LYRTSVKEDFNVMHVFAY 175 (246)
T ss_pred EEe--cccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhh-hhhhhhhhhhhhHHHHHH
Confidence 676 66655 3333332 3578999999999999999999999999999999987 88899 79999999999
Q ss_pred HHHHHcC
Q psy3301 546 LATMAAF 552 (608)
Q Consensus 546 l~~~a~~ 552 (608)
|++....
T Consensus 176 LaeK~~q 182 (246)
T KOG4252|consen 176 LAEKLTQ 182 (246)
T ss_pred HHHHHHH
Confidence 9986644
No 291
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.57 E-value=1.4e-14 Score=161.31 Aligned_cols=139 Identities=15% Similarity=0.214 Sum_probs=104.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCC----cceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcC
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKA----EEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAH 82 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad 82 (608)
..+..+|+|+|+.++|||||+++|....+.....+.. ....+.......+..+.||||||++.|...+...+..+|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD 320 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD 320 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence 3456799999999999999999999887764322211 111222222235688999999999999999999999999
Q ss_pred cEEEEEEcCCh---hhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCC----------------------C-cccC
Q psy3301 83 VICLVYSVVDD---ASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYS----------------------T-VESS 136 (608)
Q Consensus 83 ~iilV~d~~~~---~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~----------------------~-~e~S 136 (608)
++|+|+|+++. ++++.+. .+. ..++|+|+|+||+|+.... . +++|
T Consensus 321 iaILVVDA~dGv~~QT~E~I~-----~~k----~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VS 391 (742)
T CHL00189 321 IAILIIAADDGVKPQTIEAIN-----YIQ----AANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPIS 391 (742)
T ss_pred EEEEEEECcCCCChhhHHHHH-----HHH----hcCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEE
Confidence 99999999885 4444332 222 3478999999999986421 0 7899
Q ss_pred cccCcCHHHHHHHHHHHH
Q psy3301 137 AKTLKNISEMFYYAQKAV 154 (608)
Q Consensus 137 Ak~~~~i~~lf~~l~~~i 154 (608)
|++|.||+++++.+....
T Consensus 392 AktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 392 ASQGTNIDKLLETILLLA 409 (742)
T ss_pred CCCCCCHHHHHHhhhhhh
Confidence 999999999999887653
No 292
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.57 E-value=6.5e-15 Score=139.31 Aligned_cols=136 Identities=16% Similarity=0.102 Sum_probs=98.5
Q ss_pred ceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCC---CceEecceEeCCcceeEeeeeccccc------cccc
Q psy3301 408 NVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECD---PPYTINTTTVYGQEKYLVLKEILVRD------EQLP 478 (608)
Q Consensus 408 ~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~---~~~~i~~~~v~Gqe~~~~l~~~~~~~------v~d~ 478 (608)
+.+||+++|++|||||||++++..+.|.. +.||++.+... ..+.++-.+++||++|..++..++++ |||
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~~-~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D- 93 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD- 93 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCcc-ccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEe-
Confidence 44899999999999999999999888863 55666652110 12233334559999999999888887 888
Q ss_pred CCCCcc--cccc----ccc---CCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCC-------ceEEc--cCCCHH
Q psy3301 479 VLLPVD--VDCD----KYF---STSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSP-------AHSFS--AANNDR 540 (608)
Q Consensus 479 ~l~~~~--~~~~----~~~---~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~-------~~~~S--~~~~v~ 540 (608)
+++.+ ..+. +.. ..+++|++|||||+|+++. ...+++.+.+++.. .+++| +++|+.
T Consensus 94 -~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~-----~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~ 167 (181)
T PLN00223 94 -SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
T ss_pred -CCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC-----CCHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence 77655 2222 111 1257999999999999753 24677787777753 23567 899999
Q ss_pred HHHHHHHHHHc
Q psy3301 541 EVFVKLATMAA 551 (608)
Q Consensus 541 e~F~~l~~~a~ 551 (608)
++|.+|++.+.
T Consensus 168 e~~~~l~~~~~ 178 (181)
T PLN00223 168 EGLDWLSNNIA 178 (181)
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 293
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.57 E-value=2.2e-15 Score=140.24 Aligned_cols=135 Identities=14% Similarity=0.151 Sum_probs=98.7
Q ss_pred EEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCC---CceEecceEeCCcceeEeeeeccccc------ccccCCC
Q psy3301 411 VCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECD---PPYTINTTTVYGQEKYLVLKEILVRD------EQLPVLL 481 (608)
Q Consensus 411 k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~---~~~~i~~~~v~Gqe~~~~l~~~~~~~------v~d~~l~ 481 (608)
+++++|++|||||||+++|+++.+...+.||.+.+... ..+.+.-.+++|+++|..+++.++++ ||| .+
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D--~t 78 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD--SA 78 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE--CC
Confidence 47999999999999999999998888887777652111 12233334559999999999888877 788 66
Q ss_pred Ccc--cccc----ccc-CCCCCcEEEEEeCCCCCcchhccc----ccHHHHHHHcCCCCceEEc--------cCCCHHHH
Q psy3301 482 PVD--VDCD----KYF-STSKIPVMLVAGKSDMPRARQDYL----MQPDIFCETHKLSPAHSFS--------AANNDREV 542 (608)
Q Consensus 482 ~~~--~~~~----~~~-~~~~~p~ilVgnK~DL~~~~~~~~----~~~~~~~~~~~~~~~~~~S--------~~~~v~e~ 542 (608)
+.. .... +.. ..+++|+++||||+|+...+.+.. .++..++++.++. ++++| +++||+++
T Consensus 79 ~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~Sa~~~~s~~~~~~v~~~ 157 (164)
T cd04162 79 DSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWI-LQGTSLDDDGSPSRMEAVKDL 157 (164)
T ss_pred CHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceE-EEEeeecCCCChhHHHHHHHH
Confidence 644 2221 111 137899999999999987665432 4567788877775 77887 39999999
Q ss_pred HHHHHH
Q psy3301 543 FVKLAT 548 (608)
Q Consensus 543 F~~l~~ 548 (608)
|..++.
T Consensus 158 ~~~~~~ 163 (164)
T cd04162 158 LSQLIN 163 (164)
T ss_pred HHHHhc
Confidence 998864
No 294
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.57 E-value=7.5e-15 Score=135.99 Aligned_cols=136 Identities=18% Similarity=0.178 Sum_probs=101.4
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCce-------EecceEeCCcceeEeeeeccccc------cc
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPY-------TINTTTVYGQEKYLVLKEILVRD------EQ 476 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~-------~i~~~~v~Gqe~~~~l~~~~~~~------v~ 476 (608)
+|++|+|++|||||||+++++++.+...+.++++.+.....+ .+.-++.+|+++|..+...++++ +|
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 589999999999999999999999887776666652111212 22333458888887777766665 77
Q ss_pred ccCCCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHHH
Q psy3301 477 LPVLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFVK 545 (608)
Q Consensus 477 d~~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~~ 545 (608)
| +++.+ ..+. ++....++|+++||||+|+.. +.+...+..+++++.+++ ++++| ++.|++++|..
T Consensus 81 d--~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~~~~~ 156 (161)
T cd01863 81 D--VTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTREEGLKFARKHNML-FIETSAKTRDGVQQAFEE 156 (161)
T ss_pred E--CCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cccCHHHHHHHHHHcCCE-EEEEecCCCCCHHHHHHH
Confidence 8 66654 2222 333457899999999999973 334557789999999886 89999 89999999999
Q ss_pred HHHH
Q psy3301 546 LATM 549 (608)
Q Consensus 546 l~~~ 549 (608)
+.+.
T Consensus 157 ~~~~ 160 (161)
T cd01863 157 LVEK 160 (161)
T ss_pred HHHh
Confidence 8764
No 295
>PLN00023 GTP-binding protein; Provisional
Probab=99.56 E-value=1.9e-15 Score=151.44 Aligned_cols=126 Identities=15% Similarity=0.209 Sum_probs=95.0
Q ss_pred ccCCCceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceE--------------------ecceEeCCcc
Q psy3301 403 KQTTRNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYT--------------------INTTTVYGQE 462 (608)
Q Consensus 403 ~~~~r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~--------------------i~~~~v~Gqe 462 (608)
+......+||+|+|+.|||||||+++|+++.|...+.+|++.+.+...+. ++-.+++||+
T Consensus 15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE 94 (334)
T PLN00023 15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE 94 (334)
T ss_pred cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh
Confidence 44455679999999999999999999999999888888887633222222 2333449999
Q ss_pred eeEeeeeccccc------ccccCCCCcc--ccccccc------C------------CCCCcEEEEEeCCCCCcch---h-
Q psy3301 463 KYLVLKEILVRD------EQLPVLLPVD--VDCDKYF------S------------TSKIPVMLVAGKSDMPRAR---Q- 512 (608)
Q Consensus 463 ~~~~l~~~~~~~------v~d~~l~~~~--~~~~~~~------~------------~~~~p~ilVgnK~DL~~~~---~- 512 (608)
+|..++..++++ ||| +++.+ +++.+|+ . ..++|++|||||+||.+++ +
T Consensus 95 rfrsL~~~yyr~AdgiILVyD--ITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~ 172 (334)
T PLN00023 95 RYKDCRSLFYSQINGVIFVHD--LSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGS 172 (334)
T ss_pred hhhhhhHHhccCCCEEEEEEe--CCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccc
Confidence 999999999988 899 88876 4444221 0 1359999999999997643 3
Q ss_pred --cccccHHHHHHHcCCCCc
Q psy3301 513 --DYLMQPDIFCETHKLSPA 530 (608)
Q Consensus 513 --~~~~~~~~~~~~~~~~~~ 530 (608)
+..+++++||+++++.++
T Consensus 173 s~~~~e~a~~~A~~~g~l~~ 192 (334)
T PLN00023 173 SGNLVDAARQWVEKQGLLPS 192 (334)
T ss_pred ccccHHHHHHHHHHcCCCcc
Confidence 246899999999997643
No 296
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.56 E-value=7.9e-15 Score=136.99 Aligned_cols=140 Identities=17% Similarity=0.207 Sum_probs=101.5
Q ss_pred ceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEe-------cceEeCCcceeEeeeeccccc------
Q psy3301 408 NVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTI-------NTTTVYGQEKYLVLKEILVRD------ 474 (608)
Q Consensus 408 ~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i-------~~~~v~Gqe~~~~l~~~~~~~------ 474 (608)
..+||+++|++|||||||++++.++.+...+.++.+.+.....+.+ .-.+++|++.|..+++.++..
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 85 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL 85 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 4589999999999999999999988887766655543111122222 223447888877766655554
Q ss_pred ccccCCCCcc--cccc------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHH
Q psy3301 475 EQLPVLLPVD--VDCD------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFV 544 (608)
Q Consensus 475 v~d~~l~~~~--~~~~------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~ 544 (608)
+|| +++.+ +.+. +.....++|+++||||+|+.+.+++..+....+.+..... ++++| ++.|++++|.
T Consensus 86 v~d--~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~-~~~~Sa~~~~gv~~l~~ 162 (169)
T cd04114 86 TYD--ITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMY-YLETSAKESDNVEKLFL 162 (169)
T ss_pred EEE--CcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCe-EEEeeCCCCCCHHHHHH
Confidence 677 66544 2222 2223457999999999999877777667778888887754 88899 8999999999
Q ss_pred HHHHHH
Q psy3301 545 KLATMA 550 (608)
Q Consensus 545 ~l~~~a 550 (608)
.|++.+
T Consensus 163 ~i~~~~ 168 (169)
T cd04114 163 DLACRL 168 (169)
T ss_pred HHHHHh
Confidence 999865
No 297
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.56 E-value=7.8e-15 Score=140.99 Aligned_cols=140 Identities=18% Similarity=0.197 Sum_probs=99.8
Q ss_pred EEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecc-------eEeCCcceeEeeeeccccc------ccc
Q psy3301 411 VCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINT-------TTVYGQEKYLVLKEILVRD------EQL 477 (608)
Q Consensus 411 k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~-------~~v~Gqe~~~~l~~~~~~~------v~d 477 (608)
||+++|++|||||||+++|+++.+...+.++... .+...+.+++ .+.+|+++|..++..++.+ +||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEE-MHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhh-heeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 6899999999999999999999998877655533 2223333333 4448999988887777665 788
Q ss_pred cCCCCcc--cccc-------cccCCCCCcEEEEEeCCCCCc-chhcccccHHHHHH-HcCCCCceEEc--cCCCHHHHHH
Q psy3301 478 PVLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPR-ARQDYLMQPDIFCE-THKLSPAHSFS--AANNDREVFV 544 (608)
Q Consensus 478 ~~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~-~~~~~~~~~~~~~~-~~~~~~~~~~S--~~~~v~e~F~ 544 (608)
+++.+ +.+. ......++|+++|+||.|+.. .+++...+..+.+. .++.+ ++++| ++.|++++|.
T Consensus 80 --~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~-~~~~Sa~~g~gv~~l~~ 156 (198)
T cd04147 80 --VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCG-FVETSAKDNENVLEVFK 156 (198)
T ss_pred --CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCc-EEEecCCCCCCHHHHHH
Confidence 66654 2222 222346899999999999965 34444444444443 34443 78888 8999999999
Q ss_pred HHHHHHcCCC
Q psy3301 545 KLATMAAFPR 554 (608)
Q Consensus 545 ~l~~~a~~p~ 554 (608)
.|++.+..+.
T Consensus 157 ~l~~~~~~~~ 166 (198)
T cd04147 157 ELLRQANLPY 166 (198)
T ss_pred HHHHHhhccc
Confidence 9999886555
No 298
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.55 E-value=3.5e-14 Score=146.04 Aligned_cols=141 Identities=23% Similarity=0.250 Sum_probs=112.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCc-CCCCCcceEecCccCCCceeEEEEeCCCCCC----------ChH-HHHH
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPEL-VPSKAEEITIPPDVTPEMVPTHIVDYSEVDQ----------TVD-ELTE 76 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~----------~~~-~~~~ 76 (608)
+.+||+|+|.||||||||+|+|++++.... ..+.++++.|...+..++..+.++||+|..+ |.- ....
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~ 256 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK 256 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence 469999999999999999999999986654 3444577777777888888999999999533 221 1356
Q ss_pred HHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC----------------------cc
Q psy3301 77 EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST----------------------VE 134 (608)
Q Consensus 77 ~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------------------~e 134 (608)
.+..||++++|.|++.+-+-+..+ ....+. ..+.++++|.||.|+.+... +.
T Consensus 257 aI~~a~vvllviDa~~~~~~qD~~--ia~~i~----~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~ 330 (444)
T COG1160 257 AIERADVVLLVIDATEGISEQDLR--IAGLIE----EAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVF 330 (444)
T ss_pred HHhhcCEEEEEEECCCCchHHHHH--HHHHHH----HcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEE
Confidence 789999999999999887655543 444544 34789999999999987632 88
Q ss_pred cCcccCcCHHHHHHHHHHHHh
Q psy3301 135 SSAKTLKNISEMFYYAQKAVL 155 (608)
Q Consensus 135 ~SAk~~~~i~~lf~~l~~~i~ 155 (608)
+||++|.++.++|+.+.+..-
T Consensus 331 iSA~~~~~i~~l~~~i~~~~~ 351 (444)
T COG1160 331 ISALTGQGLDKLFEAIKEIYE 351 (444)
T ss_pred EEecCCCChHHHHHHHHHHHH
Confidence 999999999999988777653
No 299
>KOG0031|consensus
Probab=99.55 E-value=2.5e-14 Score=123.65 Aligned_cols=139 Identities=16% Similarity=0.243 Sum_probs=124.6
Q ss_pred cChHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHH
Q psy3301 168 ELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLF 247 (608)
Q Consensus 168 ~l~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~ 247 (608)
.+...+++.++++|...|.|+||.|..++|++++.+ +|...++++|+.++.. ..|-|+|.-||.|+..-
T Consensus 25 mf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aS-lGk~~~d~elDaM~~E----------a~gPINft~FLTmfGek 93 (171)
T KOG0031|consen 25 MFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLAS-LGKIASDEELDAMMKE----------APGPINFTVFLTMFGEK 93 (171)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHH-cCCCCCHHHHHHHHHh----------CCCCeeHHHHHHHHHHH
Confidence 467788999999999999999999999999999997 8999999999998877 47899999999998766
Q ss_pred HhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCCC
Q psy3301 248 MQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPP 327 (608)
Q Consensus 248 ~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~~ 327 (608)
+...++| +-+..+|+.||.+++|.|..+.|++++.++|+
T Consensus 94 L~gtdpe-----------------------------------------~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gD 132 (171)
T KOG0031|consen 94 LNGTDPE-----------------------------------------EVILNAFKTFDDEGSGKIDEDYLRELLTTMGD 132 (171)
T ss_pred hcCCCHH-----------------------------------------HHHHHHHHhcCccCCCccCHHHHHHHHHHhcc
Confidence 6554443 56888999999999999999999999999998
Q ss_pred CCCCCCccccccceecCCCCccchhhHHhHh
Q psy3301 328 ECPPWTDREMRAMVATNSKGWITMQGFLCYW 358 (608)
Q Consensus 328 ~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w 358 (608)
...+.+++++++....+..|.|+|..|....
T Consensus 133 r~~~eEV~~m~r~~p~d~~G~~dy~~~~~~i 163 (171)
T KOG0031|consen 133 RFTDEEVDEMYREAPIDKKGNFDYKAFTYII 163 (171)
T ss_pred cCCHHHHHHHHHhCCcccCCceeHHHHHHHH
Confidence 8999889999999999999999999987543
No 300
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.55 E-value=1.6e-14 Score=159.45 Aligned_cols=136 Identities=18% Similarity=0.114 Sum_probs=100.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCC---CCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEE
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEE---FPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLV 87 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV 87 (608)
+.|+++|++++|||||+++|++.. +.++.....+.......+...+..+.+||+||++.|...+...+..+|++++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV 80 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV 80 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence 479999999999999999999743 33222222222111112333447899999999999988888899999999999
Q ss_pred EEcCC---hhhHHHHHHhHHHHHhhhccCCCCc-EEEEEeCcCCCCCCC-----------------------cccCcccC
Q psy3301 88 YSVVD---DASIDRLSSHWLPFLRNCLVDTCLP-IVLVGNKVDLVDYST-----------------------VESSAKTL 140 (608)
Q Consensus 88 ~d~~~---~~s~~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~-----------------------~e~SAk~~ 140 (608)
+|+++ +++++.+. .+.. .++| +++|+||+|+.+... +++||++|
T Consensus 81 VDa~~G~~~qT~ehl~-----il~~----lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG 151 (581)
T TIGR00475 81 VDADEGVMTQTGEHLA-----VLDL----LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG 151 (581)
T ss_pred EECCCCCcHHHHHHHH-----HHHH----cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence 99998 45555543 2221 2567 999999999965321 78999999
Q ss_pred cCHHHHHHHHHHHHh
Q psy3301 141 KNISEMFYYAQKAVL 155 (608)
Q Consensus 141 ~~i~~lf~~l~~~i~ 155 (608)
.|+++++..+.+.+.
T Consensus 152 ~GI~eL~~~L~~l~~ 166 (581)
T TIGR00475 152 QGIGELKKELKNLLE 166 (581)
T ss_pred CCchhHHHHHHHHHH
Confidence 999999998876654
No 301
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.55 E-value=1.5e-14 Score=136.10 Aligned_cols=136 Identities=14% Similarity=0.065 Sum_probs=94.2
Q ss_pred ceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCC---CceEecceEeCCcceeEeeeeccccc------cccc
Q psy3301 408 NVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECD---PPYTINTTTVYGQEKYLVLKEILVRD------EQLP 478 (608)
Q Consensus 408 ~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~---~~~~i~~~~v~Gqe~~~~l~~~~~~~------v~d~ 478 (608)
..+||+++|++|||||||+++|..+.|. .+.||++.+... ..+.+.-.+++|+++|..+++.++++ |||
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D- 89 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVD- 89 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEE-
Confidence 3589999999999999999999888875 355566541110 12233334459999999998888877 788
Q ss_pred CCCCcc--cccc----ccc---CCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCC-------CceEEc--cCCCHH
Q psy3301 479 VLLPVD--VDCD----KYF---STSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLS-------PAHSFS--AANNDR 540 (608)
Q Consensus 479 ~l~~~~--~~~~----~~~---~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~-------~~~~~S--~~~~v~ 540 (608)
+++.+ +... ... ..+++|++|||||+||.+.. ..+++.+.+++. .++++| +|.|++
T Consensus 90 -~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 163 (175)
T smart00177 90 -SNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM-----KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLY 163 (175)
T ss_pred -CCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC-----CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHH
Confidence 77654 2222 111 12579999999999997532 234555555543 134577 899999
Q ss_pred HHHHHHHHHHc
Q psy3301 541 EVFVKLATMAA 551 (608)
Q Consensus 541 e~F~~l~~~a~ 551 (608)
++|.+|++.+.
T Consensus 164 e~~~~l~~~~~ 174 (175)
T smart00177 164 EGLTWLSNNLK 174 (175)
T ss_pred HHHHHHHHHhc
Confidence 99999988653
No 302
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.54 E-value=6.5e-15 Score=137.60 Aligned_cols=136 Identities=13% Similarity=0.036 Sum_probs=92.4
Q ss_pred ceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCC---CceEecceEeCCcceeEeeeeccccc------cccc
Q psy3301 408 NVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECD---PPYTINTTTVYGQEKYLVLKEILVRD------EQLP 478 (608)
Q Consensus 408 ~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~---~~~~i~~~~v~Gqe~~~~l~~~~~~~------v~d~ 478 (608)
+.+||+++|++|||||||++++..+.+.. +.+|.+.+... ..+.+.-.+++|+++|..+++.++++ |||
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D- 85 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVD- 85 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEe-
Confidence 45899999999999999999999888764 45565541110 12333344559999999888887776 788
Q ss_pred CCCCcc--ccccc----cc---CCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCC----CceEEc--cCCCHHHHH
Q psy3301 479 VLLPVD--VDCDK----YF---STSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLS----PAHSFS--AANNDREVF 543 (608)
Q Consensus 479 ~l~~~~--~~~~~----~~---~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~----~~~~~S--~~~~v~e~F 543 (608)
+++.. ..+.+ .. ...++|++|||||+||.+. +..++..++++..... +++++| ++.|++++|
T Consensus 86 -~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~ 162 (168)
T cd04149 86 -SADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGL 162 (168)
T ss_pred -CCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC--CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHH
Confidence 77654 22221 11 1256899999999999752 2334444444221111 367888 899999999
Q ss_pred HHHHH
Q psy3301 544 VKLAT 548 (608)
Q Consensus 544 ~~l~~ 548 (608)
.+|++
T Consensus 163 ~~l~~ 167 (168)
T cd04149 163 TWLSS 167 (168)
T ss_pred HHHhc
Confidence 99975
No 303
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.54 E-value=1.1e-14 Score=137.61 Aligned_cols=140 Identities=20% Similarity=0.211 Sum_probs=103.7
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCc-------eEecceEeCCcceeEeeeeccccc------cc
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPP-------YTINTTTVYGQEKYLVLKEILVRD------EQ 476 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~-------~~i~~~~v~Gqe~~~~l~~~~~~~------v~ 476 (608)
.||+++|++|||||||+++|+++.+...+.++... .+... +.+.-++++|+++|..++..++.. +|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIEN-TFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhh-hEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 58999999999999999999999987766655433 11122 233445568998888777666554 67
Q ss_pred ccCCCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHHH
Q psy3301 477 LPVLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFVK 545 (608)
Q Consensus 477 d~~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~~ 545 (608)
| +++.. +.+. +.....+.|+++|+||+|+...+++...+...++++++.+ ++++| ++.|+.++|.+
T Consensus 81 d--~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gv~~l~~~ 157 (180)
T cd04137 81 S--VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAA-FLESSARENENVEEAFEL 157 (180)
T ss_pred E--CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCe-EEEEeCCCCCCHHHHHHH
Confidence 7 66544 2222 2233467899999999999876666666788899988865 88999 89999999999
Q ss_pred HHHHHcCC
Q psy3301 546 LATMAAFP 553 (608)
Q Consensus 546 l~~~a~~p 553 (608)
+++.+..-
T Consensus 158 l~~~~~~~ 165 (180)
T cd04137 158 LIEEIEKV 165 (180)
T ss_pred HHHHHHHh
Confidence 99887544
No 304
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.54 E-value=8.9e-15 Score=139.36 Aligned_cols=140 Identities=20% Similarity=0.208 Sum_probs=100.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCcC------------------CCCCcceEecCccC--CCceeEEEEeCCCCC
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELV------------------PSKAEEITIPPDVT--PEMVPTHIVDYSEVD 68 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~------------------~~~~~~~~i~~~~~--~~~~~~~i~Dt~G~~ 68 (608)
+.++|+++|+.++|||||+.+|+........ ....+...-...+. .....++++||||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 4679999999999999999999965432110 00000000011122 567889999999999
Q ss_pred CChHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC----------------
Q psy3301 69 QTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST---------------- 132 (608)
Q Consensus 69 ~~~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~---------------- 132 (608)
.|.......++.+|++|+|+|+.+.-..+... .+..+. ..++|+++|.||+|+.....
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~--~l~~~~----~~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~ 155 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQTEE--HLKILR----ELGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYG 155 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHHHH--HHHHHH----HTT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTT
T ss_pred ceeecccceecccccceeeeeccccccccccc--cccccc----ccccceEEeeeeccchhhhHHHHHHHHHHHhccccc
Confidence 99888889999999999999999775433322 233333 24789999999999873111
Q ss_pred ---------cccCcccCcCHHHHHHHHHHHH
Q psy3301 133 ---------VESSAKTLKNISEMFYYAQKAV 154 (608)
Q Consensus 133 ---------~e~SAk~~~~i~~lf~~l~~~i 154 (608)
+++||++|.|++++++.+.+.+
T Consensus 156 ~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 156 ENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred cCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 7899999999999999988765
No 305
>KOG0074|consensus
Probab=99.54 E-value=2.7e-14 Score=121.81 Aligned_cols=149 Identities=21% Similarity=0.237 Sum_probs=122.2
Q ss_pred ccccCCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcC
Q psy3301 3 MKVSLRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAH 82 (608)
Q Consensus 3 ~~~~~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad 82 (608)
++...++.+||.++|-.++|||||+..|.+..... ..++..-.+..+.. .....+++||..|+..-+..|..|+.+.|
T Consensus 10 ~ks~t~rEirilllGldnAGKTT~LKqL~sED~~h-ltpT~GFn~k~v~~-~g~f~LnvwDiGGqr~IRpyWsNYyenvd 87 (185)
T KOG0074|consen 10 CKSRTRREIRILLLGLDNAGKTTFLKQLKSEDPRH-LTPTNGFNTKKVEY-DGTFHLNVWDIGGQRGIRPYWSNYYENVD 87 (185)
T ss_pred hcCCCcceEEEEEEecCCCcchhHHHHHccCChhh-ccccCCcceEEEee-cCcEEEEEEecCCccccchhhhhhhhccc
Confidence 45566889999999999999999999998877544 44443333433332 34588999999999999999999999999
Q ss_pred cEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC--------------------cccCcccCcC
Q psy3301 83 VICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST--------------------VESSAKTLKN 142 (608)
Q Consensus 83 ~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------------------~e~SAk~~~~ 142 (608)
++|+|+|.+|...|+.+...+.+++.. .....+|+++..||.|+..... -+|||.+++|
T Consensus 88 ~lIyVIDS~D~krfeE~~~el~ELlee-eKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg 166 (185)
T KOG0074|consen 88 GLIYVIDSTDEKRFEEISEELVELLEE-EKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEG 166 (185)
T ss_pred eEEEEEeCCchHhHHHHHHHHHHHhhh-hhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccC
Confidence 999999999999999999888887776 5667899999999999875443 6899999999
Q ss_pred HHHHHHHHHHHH
Q psy3301 143 ISEMFYYAQKAV 154 (608)
Q Consensus 143 i~~lf~~l~~~i 154 (608)
+.+-..++++..
T Consensus 167 ~~dg~~wv~sn~ 178 (185)
T KOG0074|consen 167 STDGSDWVQSNP 178 (185)
T ss_pred ccCcchhhhcCC
Confidence 998888877654
No 306
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.53 E-value=6.6e-14 Score=154.87 Aligned_cols=144 Identities=21% Similarity=0.144 Sum_probs=106.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCC-------CcCCCCC-----cceEe-----cCcc---CCCceeEEEEeCCCCC
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFP-------ELVPSKA-----EEITI-----PPDV---TPEMVPTHIVDYSEVD 68 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~-------~~~~~~~-----~~~~i-----~~~~---~~~~~~~~i~Dt~G~~ 68 (608)
+..+|+|+|+.++|||||+.+|+...-. ..+.... ...++ ...+ +...+.++||||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 3568999999999999999999864211 1110000 01111 1111 3446889999999999
Q ss_pred CChHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC----------------
Q psy3301 69 QTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST---------------- 132 (608)
Q Consensus 69 ~~~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~---------------- 132 (608)
+|...+...++.+|++++|+|+++....+... .|..... .++|+++|+||+|+.....
T Consensus 86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~-~~~~~~~-----~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~ 159 (600)
T PRK05433 86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLA-NVYLALE-----NDLEIIPVLNKIDLPAADPERVKQEIEDVIGIDAS 159 (600)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHH-HHHHHHH-----CCCCEEEEEECCCCCcccHHHHHHHHHHHhCCCcc
Confidence 99999999999999999999999876666554 4544322 3689999999999864321
Q ss_pred --cccCcccCcCHHHHHHHHHHHHhCCC
Q psy3301 133 --VESSAKTLKNISEMFYYAQKAVLHPM 158 (608)
Q Consensus 133 --~e~SAk~~~~i~~lf~~l~~~i~~~~ 158 (608)
+++||++|.|++++++++.+.+..|.
T Consensus 160 ~vi~iSAktG~GI~~Ll~~I~~~lp~P~ 187 (600)
T PRK05433 160 DAVLVSAKTGIGIEEVLEAIVERIPPPK 187 (600)
T ss_pred eEEEEecCCCCCHHHHHHHHHHhCcccc
Confidence 68999999999999999998876553
No 307
>KOG0076|consensus
Probab=99.53 E-value=1.4e-14 Score=128.37 Aligned_cols=148 Identities=17% Similarity=0.147 Sum_probs=117.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCC---CC----cCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHH
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEF---PE----LVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQ 79 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~---~~----~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 79 (608)
.++.+.|+|+|..++|||||+.++-...- .. ...++..-.. ..+...+.++.+||..|++..++++..+|.
T Consensus 14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLni--g~i~v~~~~l~fwdlgGQe~lrSlw~~yY~ 91 (197)
T KOG0076|consen 14 KKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNI--GTIEVCNAPLSFWDLGGQESLRSLWKKYYW 91 (197)
T ss_pred hhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceee--cceeeccceeEEEEcCChHHHHHHHHHHHH
Confidence 45678999999999999999998754321 11 1222221111 122333677999999999999999999999
Q ss_pred hcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC---------------------cccCcc
Q psy3301 80 KAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST---------------------VESSAK 138 (608)
Q Consensus 80 ~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~---------------------~e~SAk 138 (608)
.++++|+|+|++|++.|+.....+...+.+ ....++|+++.+||.|+.+... .+|||.
T Consensus 92 ~~H~ii~viDa~~~eR~~~~~t~~~~v~~~-E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal 170 (197)
T KOG0076|consen 92 LAHGIIYVIDATDRERFEESKTAFEKVVEN-EKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSAL 170 (197)
T ss_pred HhceeEEeecCCCHHHHHHHHHHHHHHHHH-HHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhh
Confidence 999999999999999999988766666665 5667899999999999986543 889999
Q ss_pred cCcCHHHHHHHHHHHHhCC
Q psy3301 139 TLKNISEMFYYAQKAVLHP 157 (608)
Q Consensus 139 ~~~~i~~lf~~l~~~i~~~ 157 (608)
+|+||++...|+.+.+...
T Consensus 171 ~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 171 TGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hcccHHHHHHHHHHHHhhc
Confidence 9999999999999988654
No 308
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.53 E-value=5.7e-14 Score=128.81 Aligned_cols=133 Identities=23% Similarity=0.240 Sum_probs=94.9
Q ss_pred EEcCCCCCHHHHHHHHHcCCCCC-cCCCCCcceEecCccCC-CceeEEEEeCCCCCCChH-------HHHHHHHhcCcEE
Q psy3301 15 LLGDRHVGKTSLILSLVSEEFPE-LVPSKAEEITIPPDVTP-EMVPTHIVDYSEVDQTVD-------ELTEEIQKAHVIC 85 (608)
Q Consensus 15 lvG~~~vGKTSLi~~l~~~~~~~-~~~~~~~~~~i~~~~~~-~~~~~~i~Dt~G~~~~~~-------~~~~~~~~ad~ii 85 (608)
|+|++|+|||||++++++..... ......+.......... ....+.+|||+|...... .....++.+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 58999999999999999876552 11111111111111111 156799999999776542 3455789999999
Q ss_pred EEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC--------------------cccCcccCcCHHH
Q psy3301 86 LVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST--------------------VESSAKTLKNISE 145 (608)
Q Consensus 86 lV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------------------~e~SAk~~~~i~~ 145 (608)
+|+|+++..+..... |.... ...+.|+++|+||+|+..... +++||+++.|+.+
T Consensus 81 ~v~~~~~~~~~~~~~--~~~~~----~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~ 154 (163)
T cd00880 81 FVVDADLRADEEEEK--LLELL----RERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDE 154 (163)
T ss_pred EEEeCCCCCCHHHHH--HHHHH----HhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHH
Confidence 999999987766654 23322 235889999999999876422 8899999999999
Q ss_pred HHHHHHHH
Q psy3301 146 MFYYAQKA 153 (608)
Q Consensus 146 lf~~l~~~ 153 (608)
++.++.+.
T Consensus 155 l~~~l~~~ 162 (163)
T cd00880 155 LREALIEA 162 (163)
T ss_pred HHHHHHhh
Confidence 99998764
No 309
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.53 E-value=1.8e-14 Score=134.73 Aligned_cols=136 Identities=16% Similarity=0.153 Sum_probs=99.1
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCce-------EecceEeCCcceeEeeeeccccc------cc
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPY-------TINTTTVYGQEKYLVLKEILVRD------EQ 476 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~-------~i~~~~v~Gqe~~~~l~~~~~~~------v~ 476 (608)
+||+++|++|||||||+++|+++.+...+.++... .+...+ .+.-++.+|+++|..++..+++. +|
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFD-NYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-eeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 58999999999999999999999986666555433 222222 23344458999887777766544 78
Q ss_pred ccCCCCcc--cccc-cc-----cCCCCCcEEEEEeCCCCCcch-----------hcccccHHHHHHHcCCCCceEEc--c
Q psy3301 477 LPVLLPVD--VDCD-KY-----FSTSKIPVMLVAGKSDMPRAR-----------QDYLMQPDIFCETHKLSPAHSFS--A 535 (608)
Q Consensus 477 d~~l~~~~--~~~~-~~-----~~~~~~p~ilVgnK~DL~~~~-----------~~~~~~~~~~~~~~~~~~~~~~S--~ 535 (608)
| .++.+ .... .| ...+++|+++||||+|+.... ++..+++.+++..+++.+++++| +
T Consensus 80 d--~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 157 (171)
T cd00157 80 S--VDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALT 157 (171)
T ss_pred E--CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCC
Confidence 8 66644 1111 11 113589999999999997544 23567788999999985699999 8
Q ss_pred CCCHHHHHHHHHH
Q psy3301 536 ANNDREVFVKLAT 548 (608)
Q Consensus 536 ~~~v~e~F~~l~~ 548 (608)
+.|++++|..|++
T Consensus 158 ~~gi~~l~~~i~~ 170 (171)
T cd00157 158 QEGVKEVFEEAIR 170 (171)
T ss_pred CCCHHHHHHHHhh
Confidence 9999999999875
No 310
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.53 E-value=2.5e-14 Score=135.44 Aligned_cols=137 Identities=15% Similarity=0.057 Sum_probs=94.3
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCC---CceEecceEeCCcceeEeeeeccccc------ccc
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECD---PPYTINTTTVYGQEKYLVLKEILVRD------EQL 477 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~---~~~~i~~~~v~Gqe~~~~l~~~~~~~------v~d 477 (608)
++.+||+++|++|||||||++++..+.+.. +.+|.+.+... ..+.+.-.+++|+++|..+++.++++ |||
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D 93 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVD 93 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence 345899999999999999999999888864 55566541110 12233334459999999888888877 788
Q ss_pred cCCCCcc--cccc----ccc---CCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCC-------CceEEc--cCCCH
Q psy3301 478 PVLLPVD--VDCD----KYF---STSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLS-------PAHSFS--AANND 539 (608)
Q Consensus 478 ~~l~~~~--~~~~----~~~---~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~-------~~~~~S--~~~~v 539 (608)
+++.+ ..+. +.. ...++|++|||||+|+.+.. ..+++++.+++. ..+++| ++.|+
T Consensus 94 --~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~-----~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv 166 (182)
T PTZ00133 94 --SNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM-----STTEVTEKLGLHSVRQRNWYIQGCCATTAQGL 166 (182)
T ss_pred --CCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC-----CHHHHHHHhCCCcccCCcEEEEeeeCCCCCCH
Confidence 76654 2222 111 12568999999999996422 223455555543 134667 89999
Q ss_pred HHHHHHHHHHHc
Q psy3301 540 REVFVKLATMAA 551 (608)
Q Consensus 540 ~e~F~~l~~~a~ 551 (608)
+++|..|++.+.
T Consensus 167 ~e~~~~l~~~i~ 178 (182)
T PTZ00133 167 YEGLDWLSANIK 178 (182)
T ss_pred HHHHHHHHHHHH
Confidence 999999998653
No 311
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.52 E-value=6.1e-14 Score=153.82 Aligned_cols=109 Identities=19% Similarity=0.241 Sum_probs=79.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCc----ceEecCccCC--------------CceeEEEEeCCCCCCChHH
Q psy3301 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAE----EITIPPDVTP--------------EMVPTHIVDYSEVDQTVDE 73 (608)
Q Consensus 12 kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~----~~~i~~~~~~--------------~~~~~~i~Dt~G~~~~~~~ 73 (608)
-|+++|++++|||||+++|.+..+....+...+ ...++.+... ....+.+|||||++.|...
T Consensus 6 iV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l 85 (590)
T TIGR00491 6 IVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNL 85 (590)
T ss_pred EEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHHH
Confidence 599999999999999999999877654332211 1122111110 1123889999999999998
Q ss_pred HHHHHHhcCcEEEEEEcCC---hhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCC
Q psy3301 74 LTEEIQKAHVICLVYSVVD---DASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVD 129 (608)
Q Consensus 74 ~~~~~~~ad~iilV~d~~~---~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 129 (608)
....++.+|++++|||+++ +++++.+. .++ ..++|+++|+||+|+..
T Consensus 86 ~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~-----~l~----~~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 86 RKRGGALADLAILIVDINEGFKPQTQEALN-----ILR----MYKTPFVVAANKIDRIP 135 (590)
T ss_pred HHHHHhhCCEEEEEEECCcCCCHhHHHHHH-----HHH----HcCCCEEEEEECCCccc
Confidence 8889999999999999997 45555543 222 13689999999999963
No 312
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.51 E-value=3.8e-14 Score=132.11 Aligned_cols=141 Identities=15% Similarity=0.142 Sum_probs=93.7
Q ss_pred EEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCC-----CcCCCceEecceEeCCcceeEeeeeccccc------ccccC
Q psy3301 411 VCHVIGNRSTGKTALCQSILRKHHDSSKTSITSP-----VECDPPYTINTTTVYGQEKYLVLKEILVRD------EQLPV 479 (608)
Q Consensus 411 k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~-----~~~~~~~~i~~~~v~Gqe~~~~l~~~~~~~------v~d~~ 479 (608)
||+|+|++|||||||+++|.++.|...+..+... ......+.++-++.+|++.|...+..++.. +||
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d-- 79 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS-- 79 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE--
Confidence 8999999999999999999999997665432111 001123344455568988776544443443 788
Q ss_pred CCCcc--cccc-ccc-----CCCCCcEEEEEeCCCCCcchhc--ccccHHHHHHHcC-CCCceEEc--cCCCHHHHHHHH
Q psy3301 480 LLPVD--VDCD-KYF-----STSKIPVMLVAGKSDMPRARQD--YLMQPDIFCETHK-LSPAHSFS--AANNDREVFVKL 546 (608)
Q Consensus 480 l~~~~--~~~~-~~~-----~~~~~p~ilVgnK~DL~~~~~~--~~~~~~~~~~~~~-~~~~~~~S--~~~~v~e~F~~l 546 (608)
+++.+ +.+. .|. ..+++|+++||||+|+.+.+.. ..++...++++++ +.+++++| ++.|++++|..+
T Consensus 80 ~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~ 159 (166)
T cd01893 80 VDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYA 159 (166)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHH
Confidence 76655 2221 111 1358999999999999765542 1233344455543 33588899 899999999999
Q ss_pred HHHHcCC
Q psy3301 547 ATMAAFP 553 (608)
Q Consensus 547 ~~~a~~p 553 (608)
++.+++|
T Consensus 160 ~~~~~~~ 166 (166)
T cd01893 160 QKAVLHP 166 (166)
T ss_pred HHHhcCC
Confidence 9988764
No 313
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.51 E-value=2.5e-14 Score=133.79 Aligned_cols=135 Identities=13% Similarity=0.007 Sum_probs=92.7
Q ss_pred EEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCC---CceEecceEeCCcceeEeeeeccccc------ccccCCC
Q psy3301 411 VCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECD---PPYTINTTTVYGQEKYLVLKEILVRD------EQLPVLL 481 (608)
Q Consensus 411 k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~---~~~~i~~~~v~Gqe~~~~l~~~~~~~------v~d~~l~ 481 (608)
||+++|++|||||||+++|.+..+.. +.+|.+.+... ..+.+.-.+++|+++|..+++.++++ ||| ++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D--~s 77 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD--SS 77 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe--CC
Confidence 68999999999999999999998764 55565541110 12333445569999998888877776 788 76
Q ss_pred Ccc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCC--C---CceEEc--cCCCHHHHHHH
Q psy3301 482 PVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKL--S---PAHSFS--AANNDREVFVK 545 (608)
Q Consensus 482 ~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~--~---~~~~~S--~~~~v~e~F~~ 545 (608)
+.+ +.+. +.....+.|+++||||+||... +..++..++++..+. . .++++| ++.||+++|.+
T Consensus 78 ~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~ 155 (169)
T cd04158 78 HRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGA--LSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDW 155 (169)
T ss_pred cHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccC--CCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHH
Confidence 654 2222 1112346899999999999642 334555555543322 1 255678 89999999999
Q ss_pred HHHHH
Q psy3301 546 LATMA 550 (608)
Q Consensus 546 l~~~a 550 (608)
|++..
T Consensus 156 l~~~~ 160 (169)
T cd04158 156 LSRQL 160 (169)
T ss_pred HHHHH
Confidence 99764
No 314
>PTZ00183 centrin; Provisional
Probab=99.51 E-value=9.9e-14 Score=128.08 Aligned_cols=146 Identities=18% Similarity=0.198 Sum_probs=122.1
Q ss_pred ccChHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHH
Q psy3301 167 QELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNL 246 (608)
Q Consensus 167 ~~l~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~ 246 (608)
..+.+....++.++|..+|.+++|.|+..|+..+++. +|..++..++..++..++.+ ++|.|+|++|+.+...
T Consensus 9 ~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~-~g~~~~~~~~~~l~~~~d~~------~~g~i~~~eF~~~~~~ 81 (158)
T PTZ00183 9 PGLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRS-LGFEPKKEEIKQMIADVDKD------GSGKIDFEEFLDIMTK 81 (158)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHH-hCCCCCHHHHHHHHHHhCCC------CCCcEeHHHHHHHHHH
Confidence 4577888999999999999999999999999999986 58888888999999999887 7999999999976543
Q ss_pred HHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCC
Q psy3301 247 FMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCP 326 (608)
Q Consensus 247 ~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~ 326 (608)
..... . ..+.++.+|+.||.|++|+|+..|+..++...|
T Consensus 82 ~~~~~--------------------------------------~---~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~ 120 (158)
T PTZ00183 82 KLGER--------------------------------------D---PREEILKAFRLFDDDKTGKISLKNLKRVAKELG 120 (158)
T ss_pred HhcCC--------------------------------------C---cHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhC
Confidence 22110 0 135688999999999999999999999999887
Q ss_pred CCCCCCCccccccceecCCCCccchhhHHhHhhh
Q psy3301 327 PECPPWTDREMRAMVATNSKGWITMQGFLCYWIL 360 (608)
Q Consensus 327 ~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~ 360 (608)
....+.+...++...|.|++|.|+|++|+....-
T Consensus 121 ~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 121 ETITDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred CCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 4455555778889999999999999999887654
No 315
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.51 E-value=2.3e-14 Score=132.18 Aligned_cols=135 Identities=17% Similarity=0.226 Sum_probs=99.4
Q ss_pred EEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEe-------cceEeCCcceeEeeeeccccc------ccc
Q psy3301 411 VCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTI-------NTTTVYGQEKYLVLKEILVRD------EQL 477 (608)
Q Consensus 411 k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i-------~~~~v~Gqe~~~~l~~~~~~~------v~d 477 (608)
|++|+|++|||||||+++++++.+...+.++... .+...+.+ .-.+.+|++.|..+....++. +||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIED-SYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhH-eEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 6899999999999999999998887777655442 22222333 333447887776665555544 677
Q ss_pred cCCCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHHHH
Q psy3301 478 PVLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFVKL 546 (608)
Q Consensus 478 ~~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~~l 546 (608)
+++.+ ..+. .......+|+++|+||+|+...+++..+++.+++++++.+ ++++| ++.|++++|..|
T Consensus 80 --~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~~~~i~~l~~~l 156 (160)
T cd00876 80 --ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCP-FIETSAKDNINIDEVFKLL 156 (160)
T ss_pred --CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCc-EEEeccCCCCCHHHHHHHH
Confidence 66554 2222 1222368999999999999887777778899999998865 88999 899999999999
Q ss_pred HHH
Q psy3301 547 ATM 549 (608)
Q Consensus 547 ~~~ 549 (608)
++.
T Consensus 157 ~~~ 159 (160)
T cd00876 157 VRE 159 (160)
T ss_pred Hhh
Confidence 875
No 316
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.51 E-value=2.9e-13 Score=153.10 Aligned_cols=137 Identities=13% Similarity=0.077 Sum_probs=100.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCC-cCCCCCcceEecCccCCCceeEEEEeCCCCCCChHH----------HHHH
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPE-LVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDE----------LTEE 77 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~----------~~~~ 77 (608)
+.++|+++|.+|||||||+|+|++..... +++.+ +.......+...+.++++|||||..++... ...+
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGv-Tve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGV-TVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCc-eEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 35799999999999999999999876432 34333 223333345667788999999998765321 2233
Q ss_pred H--HhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC----------------cccCccc
Q psy3301 78 I--QKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST----------------VESSAKT 139 (608)
Q Consensus 78 ~--~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------------~e~SAk~ 139 (608)
+ ..+|++++|+|+++.+.-. +|...+.+ .++|+++|+||+|+.+... +++||++
T Consensus 81 l~~~~aD~vI~VvDat~ler~l----~l~~ql~e----~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~ 152 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERNL----YLTLQLLE----LGIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTR 152 (772)
T ss_pred HhccCCCEEEEEecCCcchhhH----HHHHHHHH----cCCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeec
Confidence 3 3799999999998865422 33334432 3789999999999874432 8899999
Q ss_pred CcCHHHHHHHHHHHH
Q psy3301 140 LKNISEMFYYAQKAV 154 (608)
Q Consensus 140 ~~~i~~lf~~l~~~i 154 (608)
|.|++++.+.+.+..
T Consensus 153 g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 153 GRGIEALKLAIDRHQ 167 (772)
T ss_pred CCCHHHHHHHHHHhh
Confidence 999999999988765
No 317
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.50 E-value=2.3e-14 Score=129.82 Aligned_cols=126 Identities=18% Similarity=0.138 Sum_probs=87.0
Q ss_pred EEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecceEeCCc-----ceeEeeeeccccc------ccccC
Q psy3301 411 VCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINTTTVYGQ-----EKYLVLKEILVRD------EQLPV 479 (608)
Q Consensus 411 k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~~~v~Gq-----e~~~~l~~~~~~~------v~d~~ 479 (608)
||+++|++|||||||+++|+++.+. +.+|.+. .+..+.++++|+ +.|..+... +++ |||
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~-----~~~~~~iDt~G~~~~~~~~~~~~~~~-~~~ad~vilv~d-- 71 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAV-----EYNDGAIDTPGEYVENRRLYSALIVT-AADADVIALVQS-- 71 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeE-----EEcCeeecCchhhhhhHHHHHHHHHH-hhcCCEEEEEec--
Confidence 8999999999999999999998763 3334433 222245677887 234433332 233 788
Q ss_pred CCCcccccc-cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHHHHH
Q psy3301 480 LLPVDVDCD-KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFVKLA 547 (608)
Q Consensus 480 l~~~~~~~~-~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~~l~ 547 (608)
+++...... .+......|+++|+||+||.+ +.+..+++.+++++.+..+++++| ++.|++++|..++
T Consensus 72 ~~~~~s~~~~~~~~~~~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 72 ATDPESRFPPGFASIFVKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred CCCCCcCCChhHHHhccCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence 666552222 222222349999999999975 334456678889888876688999 8999999999885
No 318
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.50 E-value=5.4e-14 Score=136.99 Aligned_cols=142 Identities=18% Similarity=0.159 Sum_probs=104.7
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCC-------CceEecceEeCCcceeEeeeeccccc-----
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECD-------PPYTINTTTVYGQEKYLVLKEILVRD----- 474 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~-------~~~~i~~~~v~Gqe~~~~l~~~~~~~----- 474 (608)
...+|++++|++|||||||+++|+.+.+...|.+|.+.+... ..+.++..+++|+++|..++..+++.
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i 86 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAI 86 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEE
Confidence 345899999999999999999999999988888777662211 22445555669999998888776655
Q ss_pred -ccccCCCCcc--ccccccc-----CCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHH
Q psy3301 475 -EQLPVLLPVD--VDCDKYF-----STSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFV 544 (608)
Q Consensus 475 -v~d~~l~~~~--~~~~~~~-----~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~ 544 (608)
+|| +++.. ..+..|+ ...++|+++||||+|+.+. ++ ..+..++++..++. ++++| ++.|++++|.
T Consensus 87 ~v~d--~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~-~~-~~~~~~~~~~~~~~-~~e~Sa~~~~~v~~~f~ 161 (215)
T PTZ00132 87 IMFD--VTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDR-QV-KARQITFHRKKNLQ-YYDISAKSNYNFEKPFL 161 (215)
T ss_pred EEEE--CcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccc-cC-CHHHHHHHHHcCCE-EEEEeCCCCCCHHHHHH
Confidence 677 66654 2222221 1367999999999998643 23 23345678888875 88999 8999999999
Q ss_pred HHHHHHcCC
Q psy3301 545 KLATMAAFP 553 (608)
Q Consensus 545 ~l~~~a~~p 553 (608)
.|++.++..
T Consensus 162 ~ia~~l~~~ 170 (215)
T PTZ00132 162 WLARRLTND 170 (215)
T ss_pred HHHHHHhhc
Confidence 999987653
No 319
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.50 E-value=7.3e-14 Score=140.73 Aligned_cols=113 Identities=19% Similarity=0.241 Sum_probs=79.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCc----CCC-CC----------cceEec---CccCCCceeEEEEeCCCCCCChHH
Q psy3301 12 RILLLGDRHVGKTSLILSLVSEEFPEL----VPS-KA----------EEITIP---PDVTPEMVPTHIVDYSEVDQTVDE 73 (608)
Q Consensus 12 kI~lvG~~~vGKTSLi~~l~~~~~~~~----~~~-~~----------~~~~i~---~~~~~~~~~~~i~Dt~G~~~~~~~ 73 (608)
+|+++|.+|+|||||+++|+....... +.. .. ...++. ..+...+..+++|||||+..+...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 589999999999999999986432211 110 00 001111 122345678999999999888788
Q ss_pred HHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCC
Q psy3301 74 LTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDY 130 (608)
Q Consensus 74 ~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 130 (608)
+...++.+|++++|+|+++........ .|. .+. ..++|+++|+||+|+...
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~-~~~-~~~----~~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEK-LWE-FAD----EAGIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHH-HHH-HHH----HcCCCEEEEEECCccCCC
Confidence 889999999999999999876654433 343 233 246899999999998654
No 320
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.49 E-value=9.2e-14 Score=153.65 Aligned_cols=130 Identities=18% Similarity=0.130 Sum_probs=92.2
Q ss_pred cCCCCCHHHHHHHHHcCCCCCc-CCCCCcceEecCccCCCceeEEEEeCCCCCCChHH------HHHHH--HhcCcEEEE
Q psy3301 17 GDRHVGKTSLILSLVSEEFPEL-VPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDE------LTEEI--QKAHVICLV 87 (608)
Q Consensus 17 G~~~vGKTSLi~~l~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~------~~~~~--~~ad~iilV 87 (608)
|++|||||||+|++.+..+... .+.+ +.......+...+..+++|||||++++... ...++ ..+|++++|
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~-Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~V 79 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGV-TVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNV 79 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCe-EEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEE
Confidence 8999999999999999876332 3332 222222333445567899999998876432 23333 378999999
Q ss_pred EEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC----------------cccCcccCcCHHHHHHHHH
Q psy3301 88 YSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST----------------VESSAKTLKNISEMFYYAQ 151 (608)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------------~e~SAk~~~~i~~lf~~l~ 151 (608)
+|+++.+.. . ++...+. ..++|+++|+||+|+.+... +++||++|.|++++++.+.
T Consensus 80 vDat~ler~---l-~l~~ql~----~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~ 151 (591)
T TIGR00437 80 VDASNLERN---L-YLTLQLL----ELGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKDAIR 151 (591)
T ss_pred ecCCcchhh---H-HHHHHHH----hcCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence 999875431 1 2322332 24789999999999864331 8999999999999999998
Q ss_pred HHHh
Q psy3301 152 KAVL 155 (608)
Q Consensus 152 ~~i~ 155 (608)
+...
T Consensus 152 ~~~~ 155 (591)
T TIGR00437 152 KAIG 155 (591)
T ss_pred HHhh
Confidence 8753
No 321
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.49 E-value=3.7e-13 Score=134.80 Aligned_cols=113 Identities=15% Similarity=0.059 Sum_probs=78.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCc----CCC-----------CCcceEe---cCccCCCceeEEEEeCCCCCCChHH
Q psy3301 12 RILLLGDRHVGKTSLILSLVSEEFPEL----VPS-----------KAEEITI---PPDVTPEMVPTHIVDYSEVDQTVDE 73 (608)
Q Consensus 12 kI~lvG~~~vGKTSLi~~l~~~~~~~~----~~~-----------~~~~~~i---~~~~~~~~~~~~i~Dt~G~~~~~~~ 73 (608)
+|+++|.+|+|||||+++|+....... +.. .....++ ...+...+..+++|||||+.++...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 589999999999999999975321110 100 0011111 1223456788999999999989888
Q ss_pred HHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCC
Q psy3301 74 LTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDY 130 (608)
Q Consensus 74 ~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 130 (608)
+...++.+|++++|+|+.+...-+.. .+...+. ..++|+++++||+|+...
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t~--~~~~~~~----~~~~p~ivviNK~D~~~a 131 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQTE--TVWRQAD----RYNVPRIAFVNKMDRTGA 131 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHHH--HHHHHHH----HcCCCEEEEEECCCCCCC
Confidence 99999999999999999876432222 2333333 246899999999998753
No 322
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.48 E-value=3.3e-13 Score=131.23 Aligned_cols=111 Identities=24% Similarity=0.294 Sum_probs=80.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCcC-----------CCCC-----cceEecC---cc-----CCCceeEEEEeCCCC
Q psy3301 12 RILLLGDRHVGKTSLILSLVSEEFPELV-----------PSKA-----EEITIPP---DV-----TPEMVPTHIVDYSEV 67 (608)
Q Consensus 12 kI~lvG~~~vGKTSLi~~l~~~~~~~~~-----------~~~~-----~~~~i~~---~~-----~~~~~~~~i~Dt~G~ 67 (608)
+|+|+|+.|+|||||+.+|+...+.... .... ...++.. .+ ....+.+++|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6999999999999999999986554321 0000 0011100 00 234588999999999
Q ss_pred CCChHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCC
Q psy3301 68 DQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLV 128 (608)
Q Consensus 68 ~~~~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 128 (608)
+++.......+..+|++++|+|+++..++... .|+..... .++|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~--~~~~~~~~----~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNTE--RLIRHAIL----EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHHH--HHHHHHHH----cCCCEEEEEECcccC
Confidence 99988889999999999999999987766442 34444432 358999999999975
No 323
>KOG1423|consensus
Probab=99.48 E-value=1.9e-13 Score=132.10 Aligned_cols=143 Identities=16% Similarity=0.177 Sum_probs=108.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCc-CCCCCcceEecCccCCCceeEEEEeCCCCCCChHH------------H
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPEL-VPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDE------------L 74 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~------------~ 74 (608)
.+..+|+|+|.||||||||.|.+++.+..+. ....+++..+..-++.....+.++||||.-.-... .
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~ 149 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNP 149 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCH
Confidence 3568999999999999999999999987664 33344666666777888899999999994321111 1
Q ss_pred HHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC----------------------
Q psy3301 75 TEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST---------------------- 132 (608)
Q Consensus 75 ~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~---------------------- 132 (608)
...+..||++++|+|+++....-+. ..+..++. -.++|-++|.||+|......
T Consensus 150 ~~a~q~AD~vvVv~Das~tr~~l~p--~vl~~l~~---ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~ 224 (379)
T KOG1423|consen 150 RDAAQNADCVVVVVDASATRTPLHP--RVLHMLEE---YSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQ 224 (379)
T ss_pred HHHHhhCCEEEEEEeccCCcCccCh--HHHHHHHH---HhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHH
Confidence 4567889999999999974332222 24444543 35789999999999765433
Q ss_pred ------------------------cccCcccCcCHHHHHHHHHHHHh
Q psy3301 133 ------------------------VESSAKTLKNISEMFYYAQKAVL 155 (608)
Q Consensus 133 ------------------------~e~SAk~~~~i~~lf~~l~~~i~ 155 (608)
|.+||++|+||+++-+++...+.
T Consensus 225 ~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 225 EKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP 271 (379)
T ss_pred HHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence 88999999999999999988774
No 324
>PTZ00184 calmodulin; Provisional
Probab=99.48 E-value=1.1e-13 Score=126.19 Aligned_cols=142 Identities=23% Similarity=0.324 Sum_probs=117.2
Q ss_pred cChHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHH
Q psy3301 168 ELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLF 247 (608)
Q Consensus 168 ~l~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~ 247 (608)
+++++..+.+++.|..+|.+++|.|+.+|+..++.. +|.+++.+++..+...++.+ ++|.|+|++|+.++..+
T Consensus 4 ~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~d~~------~~g~i~~~ef~~~l~~~ 76 (149)
T PTZ00184 4 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRS-LGQNPTEAELQDMINEVDAD------GNGTIDFPEFLTLMARK 76 (149)
T ss_pred ccCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHH-hCCCCCHHHHHHHHHhcCcC------CCCcCcHHHHHHHHHHh
Confidence 466788889999999999999999999999999876 68778888899999988887 78999999999775433
Q ss_pred HhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCCC
Q psy3301 248 MQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPP 327 (608)
Q Consensus 248 ~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~~ 327 (608)
.... .....++.+|+.||.|++|+|+.+|+..++..++.
T Consensus 77 ~~~~-----------------------------------------~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~ 115 (149)
T PTZ00184 77 MKDT-----------------------------------------DSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGE 115 (149)
T ss_pred ccCC-----------------------------------------cHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCC
Confidence 2211 01245788999999999999999999999988863
Q ss_pred CCCCCCccccccceecCCCCccchhhHHhH
Q psy3301 328 ECPPWTDREMRAMVATNSKGWITMQGFLCY 357 (608)
Q Consensus 328 ~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 357 (608)
.....+...++..+|.+++|.|+|++|+..
T Consensus 116 ~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 145 (149)
T PTZ00184 116 KLTDEEVDEMIREADVDGDGQINYEEFVKM 145 (149)
T ss_pred CCCHHHHHHHHHhcCCCCCCcCcHHHHHHH
Confidence 333344677888999999999999999875
No 325
>KOG0072|consensus
Probab=99.48 E-value=7.6e-14 Score=119.55 Aligned_cols=144 Identities=18% Similarity=0.171 Sum_probs=118.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEE
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVY 88 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~ 88 (608)
...+|.++|-.|+|||++..++.-++...+.|+.... +..+..++.++.+||..|+...+..|+.++.+.|++|+|+
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvttkPtigfn---ve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVV 93 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFN---VETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVV 93 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcC---ccccccccccceeeEccCcccccHHHHHHhcccceEEEEE
Confidence 6789999999999999999999888876655543221 2245568899999999999999999999999999999999
Q ss_pred EcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC--------------------cccCcccCcCHHHHHH
Q psy3301 89 SVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST--------------------VESSAKTLKNISEMFY 148 (608)
Q Consensus 89 d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------------------~e~SAk~~~~i~~lf~ 148 (608)
|.+|.+........+..++.+ ....+..+++++||.|...... +++||.+|+|+++.++
T Consensus 94 Dssd~dris~a~~el~~mL~E-~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~D 172 (182)
T KOG0072|consen 94 DSSDRDRISIAGVELYSMLQE-EELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAMD 172 (182)
T ss_pred eccchhhhhhhHHHHHHHhcc-HhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHHH
Confidence 999987766666556666665 4555678899999999765432 9999999999999999
Q ss_pred HHHHHHhC
Q psy3301 149 YAQKAVLH 156 (608)
Q Consensus 149 ~l~~~i~~ 156 (608)
|+++.+..
T Consensus 173 WL~~~l~~ 180 (182)
T KOG0072|consen 173 WLQRPLKS 180 (182)
T ss_pred HHHHHHhc
Confidence 99987743
No 326
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.48 E-value=2.1e-14 Score=132.96 Aligned_cols=131 Identities=13% Similarity=0.035 Sum_probs=88.0
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCC---CceEecceEeCCcceeEeeeeccccc------ccccCC
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECD---PPYTINTTTVYGQEKYLVLKEILVRD------EQLPVL 480 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~---~~~~i~~~~v~Gqe~~~~l~~~~~~~------v~d~~l 480 (608)
+||+++|++|||||||++++..+.|.. +.||.+.+... ..+.+.-.+++|+++|..++..++++ ||| +
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D--~ 77 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD--S 77 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe--C
Confidence 489999999999999999999888874 55666541100 12223334459999999888888877 788 7
Q ss_pred CCcc--ccccc-------ccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCC-------CceEEc--cCCCHHHH
Q psy3301 481 LPVD--VDCDK-------YFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLS-------PAHSFS--AANNDREV 542 (608)
Q Consensus 481 ~~~~--~~~~~-------~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~-------~~~~~S--~~~~v~e~ 542 (608)
++.+ +.+.+ .....++|++|||||+||.+... .++..+.+++. ..+++| +|.|++++
T Consensus 78 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-----~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~ 152 (159)
T cd04150 78 NDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMS-----AAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEG 152 (159)
T ss_pred CCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCC-----HHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHH
Confidence 6654 22221 11124689999999999964321 12333333221 135678 89999999
Q ss_pred HHHHHH
Q psy3301 543 FVKLAT 548 (608)
Q Consensus 543 F~~l~~ 548 (608)
|.+|++
T Consensus 153 ~~~l~~ 158 (159)
T cd04150 153 LDWLSN 158 (159)
T ss_pred HHHHhc
Confidence 999864
No 327
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.48 E-value=1.1e-13 Score=133.92 Aligned_cols=129 Identities=20% Similarity=0.137 Sum_probs=85.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCcC-------------------------------CCCCcceEecCccCCCceeEE
Q psy3301 12 RILLLGDRHVGKTSLILSLVSEEFPELV-------------------------------PSKAEEITIPPDVTPEMVPTH 60 (608)
Q Consensus 12 kI~lvG~~~vGKTSLi~~l~~~~~~~~~-------------------------------~~~~~~~~i~~~~~~~~~~~~ 60 (608)
||+|+|.+|+|||||+++|+........ ....+.......+...+.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 6899999999999999999865432210 011122222223345667899
Q ss_pred EEeCCCCCCChHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC--------
Q psy3301 61 IVDYSEVDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-------- 132 (608)
Q Consensus 61 i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-------- 132 (608)
||||||++++...+...++.+|++++|+|++++..-+.. .....+.. . ...|+|+|+||+|+.....
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~--~~~~~~~~--~-~~~~iIvviNK~D~~~~~~~~~~~i~~ 155 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR--RHSYILSL--L-GIRHVVVAVNKMDLVDYSEEVFEEIVA 155 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH--HHHHHHHH--c-CCCcEEEEEEchhcccCCHHHHHHHHH
Confidence 999999988877777788999999999999876422211 12222221 1 1235788999999864210
Q ss_pred ----------------cccCcccCcCHHH
Q psy3301 133 ----------------VESSAKTLKNISE 145 (608)
Q Consensus 133 ----------------~e~SAk~~~~i~~ 145 (608)
+++||++|.|+.+
T Consensus 156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 156 DYLAFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred HHHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 6788888888764
No 328
>KOG4423|consensus
Probab=99.48 E-value=1.1e-15 Score=136.60 Aligned_cols=143 Identities=27% Similarity=0.293 Sum_probs=120.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCcc--------CCCceeEEEEeCCCCCCChHHHHHHHHhc
Q psy3301 10 NVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDV--------TPEMVPTHIVDYSEVDQTVDELTEEIQKA 81 (608)
Q Consensus 10 ~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~--------~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a 81 (608)
-+|+.|+|+-|+||||++.+.+...|...+..+ |..++ +...+++.|||.+|++++..+..-+++.|
T Consensus 25 L~k~lVig~~~vgkts~i~ryv~~nfs~~yRAt-----IgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea 99 (229)
T KOG4423|consen 25 LFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRAT-----IGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEA 99 (229)
T ss_pred hhhhheeeeccccchhHHHHHHHHHHHHHHHHH-----HhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCC
Confidence 379999999999999999999999887665443 33332 23457789999999999988888899999
Q ss_pred CcEEEEEEcCChhhHHHHHHhHHHHHhhh---ccCCCCcEEEEEeCcCCCCCCC-------------------cccCccc
Q psy3301 82 HVICLVYSVVDDASIDRLSSHWLPFLRNC---LVDTCLPIVLVGNKVDLVDYST-------------------VESSAKT 139 (608)
Q Consensus 82 d~iilV~d~~~~~s~~~~~~~~~~~i~~~---~~~~~~piilv~nK~Dl~~~~~-------------------~e~SAk~ 139 (608)
.+..+|||+++.-+|+... .|.+.+... ..+..+|+++..||||...... +++|+|.
T Consensus 100 ~~~~iVfdvt~s~tfe~~s-kwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Ke 178 (229)
T KOG4423|consen 100 HGAFIVFDVTRSLTFEPVS-KWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKE 178 (229)
T ss_pred cceEEEEEccccccccHHH-HHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeecccc
Confidence 9999999999999999998 899887654 5677889999999999875432 9999999
Q ss_pred CcCHHHHHHHHHHHHhCCC
Q psy3301 140 LKNISEMFYYAQKAVLHPM 158 (608)
Q Consensus 140 ~~~i~~lf~~l~~~i~~~~ 158 (608)
+.||+|+.+.+.+.++...
T Consensus 179 nkni~Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 179 NKNIPEAQRELVEKILVND 197 (229)
T ss_pred ccChhHHHHHHHHHHHhhc
Confidence 9999999999999886543
No 329
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.47 E-value=1.9e-13 Score=121.01 Aligned_cols=119 Identities=26% Similarity=0.283 Sum_probs=85.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCC----CCChHHHHHHHHhcCcEEEE
Q psy3301 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEV----DQTVDELTEEIQKAHVICLV 87 (608)
Q Consensus 12 kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~----~~~~~~~~~~~~~ad~iilV 87 (608)
||+++|+.|+|||||+++|.+.+.... .+. .+. +.=.++||||- ..+...+.....+||+|++|
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~~--KTq-------~i~---~~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll 70 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRYK--KTQ-------AIE---YYDNTIDTPGEYIENPRFYHALIVTAQDADVVLLL 70 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCcC--ccc-------eeE---ecccEEECChhheeCHHHHHHHHHHHhhCCEEEEE
Confidence 899999999999999999999765321 110 011 11246999993 23334445566799999999
Q ss_pred EEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHHH
Q psy3301 88 YSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYYA 150 (608)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~l 150 (608)
.|++++.+. +-+.+. ..-+.|+|-|+||+|+..... |++|+.+|+||+++.+++
T Consensus 71 ~dat~~~~~------~pP~fa---~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L 141 (143)
T PF10662_consen 71 QDATEPRSV------FPPGFA---SMFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYL 141 (143)
T ss_pred ecCCCCCcc------CCchhh---cccCCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHH
Confidence 999987652 222222 223679999999999993222 999999999999999887
Q ss_pred H
Q psy3301 151 Q 151 (608)
Q Consensus 151 ~ 151 (608)
.
T Consensus 142 ~ 142 (143)
T PF10662_consen 142 E 142 (143)
T ss_pred h
Confidence 4
No 330
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.47 E-value=7.2e-13 Score=119.64 Aligned_cols=143 Identities=17% Similarity=0.154 Sum_probs=107.6
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHHcCCCCCc------CCCCC-cceEecCccC----CCceeEEEEeCCCCCCChHHH
Q psy3301 6 SLRRNVRILLLGDRHVGKTSLILSLVSEEFPEL------VPSKA-EEITIPPDVT----PEMVPTHIVDYSEVDQTVDEL 74 (608)
Q Consensus 6 ~~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~------~~~~~-~~~~i~~~~~----~~~~~~~i~Dt~G~~~~~~~~ 74 (608)
......||+|+|+.++||||++.++........ ..... ...|+..++. .++..++++|||||++|.-++
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~ 85 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMW 85 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHH
Confidence 445678999999999999999999998764221 11111 1245555543 344779999999999999999
Q ss_pred HHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCc
Q psy3301 75 TEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSA 137 (608)
Q Consensus 75 ~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SA 137 (608)
....+.+++++++.|.+.+..+ +.. ..+..+.. . ..+|++|++||.||..... ++.+|
T Consensus 86 ~~l~~ga~gaivlVDss~~~~~-~a~-~ii~f~~~--~-~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~~vi~~~a 160 (187)
T COG2229 86 EILSRGAVGAIVLVDSSRPITF-HAE-EIIDFLTS--R-NPIPVVVAINKQDLFDALPPEKIREALKLELLSVPVIEIDA 160 (187)
T ss_pred HHHhCCcceEEEEEecCCCcch-HHH-HHHHHHhh--c-cCCCEEEEeeccccCCCCCHHHHHHHHHhccCCCceeeeec
Confidence 9999999999999999999998 333 56666653 2 1299999999999987643 67777
Q ss_pred ccCcCHHHHHHHHHHH
Q psy3301 138 KTLKNISEMFYYAQKA 153 (608)
Q Consensus 138 k~~~~i~~lf~~l~~~ 153 (608)
..+++..+....++..
T Consensus 161 ~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 161 TEGEGARDQLDVLLLK 176 (187)
T ss_pred ccchhHHHHHHHHHhh
Confidence 7777777777666554
No 331
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.46 E-value=7.4e-14 Score=131.12 Aligned_cols=135 Identities=16% Similarity=0.087 Sum_probs=90.3
Q ss_pred ceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCC---CceEecceEeCCcceeEeeeeccccc------cccc
Q psy3301 408 NVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECD---PPYTINTTTVYGQEKYLVLKEILVRD------EQLP 478 (608)
Q Consensus 408 ~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~---~~~~i~~~~v~Gqe~~~~l~~~~~~~------v~d~ 478 (608)
..+||+++|++|||||||++++.++.+. .+.+|.+..... ..+.+.-.+++|+++|..++..++++ |||
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d- 90 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDID-TISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVD- 90 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCC-CcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEE-
Confidence 4489999999999999999999988654 444555431100 12233445569999988777777665 778
Q ss_pred CCCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHH-----cCCCCceEEc--cCCCHHHH
Q psy3301 479 VLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCET-----HKLSPAHSFS--AANNDREV 542 (608)
Q Consensus 479 ~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~-----~~~~~~~~~S--~~~~v~e~ 542 (608)
.++.+ ..+. +.....++|+++|+||+|+.+.. ..++..++.+. .++ +++++| ++.|++++
T Consensus 91 -~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~gi~~l 166 (173)
T cd04154 91 -SSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHW-RIQPCSAVTGEGLLQG 166 (173)
T ss_pred -CCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCce-EEEeccCCCCcCHHHH
Confidence 66653 2221 12224689999999999997533 22333444322 223 388899 89999999
Q ss_pred HHHHHH
Q psy3301 543 FVKLAT 548 (608)
Q Consensus 543 F~~l~~ 548 (608)
|.+++.
T Consensus 167 ~~~l~~ 172 (173)
T cd04154 167 IDWLVD 172 (173)
T ss_pred HHHHhc
Confidence 999864
No 332
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.46 E-value=1.1e-13 Score=128.18 Aligned_cols=131 Identities=16% Similarity=0.123 Sum_probs=88.8
Q ss_pred EEEEEccCCCchHHHHHHHhcCC-CCCCCCCCCCCCc--C-CCceEecceEeCCcceeEeeeeccccc------ccccCC
Q psy3301 411 VCHVIGNRSTGKTALCQSILRKH-HDSSKTSITSPVE--C-DPPYTINTTTVYGQEKYLVLKEILVRD------EQLPVL 480 (608)
Q Consensus 411 k~~viG~~gvGKTsll~~f~~~~-~~~~~~~t~~~~~--~-~~~~~i~~~~v~Gqe~~~~l~~~~~~~------v~d~~l 480 (608)
+|+++|++|||||||+++|.++. +...+.+|++.+. + ...+.+.-++++|+++|..+++.++++ ++| .
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D--~ 78 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVID--S 78 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEe--C
Confidence 58999999999999999999986 3556666666411 0 022344455669999999888888776 677 5
Q ss_pred CCcc--cccc-------c--ccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCC-------CceEEc--cCCCHH
Q psy3301 481 LPVD--VDCD-------K--YFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLS-------PAHSFS--AANNDR 540 (608)
Q Consensus 481 ~~~~--~~~~-------~--~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~-------~~~~~S--~~~~v~ 540 (608)
++.. ..+. + .....++|+++|+||+|+.+.. ...++....++. +++++| ++.|++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~ 153 (162)
T cd04157 79 SDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL-----TAVKITQLLGLENIKDKPWHIFASNALTGEGLD 153 (162)
T ss_pred CcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC-----CHHHHHHHhCCccccCceEEEEEeeCCCCCchH
Confidence 5543 1111 1 1123579999999999997532 123333333321 257788 899999
Q ss_pred HHHHHHHH
Q psy3301 541 EVFVKLAT 548 (608)
Q Consensus 541 e~F~~l~~ 548 (608)
++|.+|++
T Consensus 154 ~~~~~l~~ 161 (162)
T cd04157 154 EGVQWLQA 161 (162)
T ss_pred HHHHHHhc
Confidence 99999875
No 333
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.46 E-value=1.9e-13 Score=146.71 Aligned_cols=139 Identities=16% Similarity=0.134 Sum_probs=94.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCC--CCCc-----------------------------CCCCCcceEecCccCCC
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEE--FPEL-----------------------------VPSKAEEITIPPDVTPE 55 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~--~~~~-----------------------------~~~~~~~~~i~~~~~~~ 55 (608)
.++.++|+++|+.++|||||+.+|+... .... .....+.......+...
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 4567999999999999999999998632 1100 00111122222335566
Q ss_pred ceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEcCChhhHHHHHHh-HHHHHhhhccCCCCcEEEEEeCcCCCCCCC--
Q psy3301 56 MVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSH-WLPFLRNCLVDTCLPIVLVGNKVDLVDYST-- 132 (608)
Q Consensus 56 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-- 132 (608)
++.+.||||||+++|.......+..+|++++|+|+++.+++...... +..... .. ...|+|+|+||+|+.+...
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~--~~-~~~~iIVviNK~Dl~~~~~~~ 160 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLAR--TL-GINQLIVAINKMDSVNYDEEE 160 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHH--Hc-CCCeEEEEEEChhccCccHHH
Confidence 78899999999998877777778999999999999988543221111 112222 11 2357999999999963110
Q ss_pred ------------------------cccCcccCcCHHHHHH
Q psy3301 133 ------------------------VESSAKTLKNISEMFY 148 (608)
Q Consensus 133 ------------------------~e~SAk~~~~i~~lf~ 148 (608)
+++||++|.||.+++.
T Consensus 161 ~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~ 200 (426)
T TIGR00483 161 FEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE 200 (426)
T ss_pred HHHHHHHHHHHHHHcCCCcccceEEEeecccccccccccc
Confidence 7889999999988653
No 334
>PRK10218 GTP-binding protein; Provisional
Probab=99.46 E-value=9.5e-13 Score=144.95 Aligned_cols=144 Identities=20% Similarity=0.130 Sum_probs=104.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHc--CCCCCcCCC-----------CCcceEe---cCccCCCceeEEEEeCCCCCCChH
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVS--EEFPELVPS-----------KAEEITI---PPDVTPEMVPTHIVDYSEVDQTVD 72 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~--~~~~~~~~~-----------~~~~~~i---~~~~~~~~~~~~i~Dt~G~~~~~~ 72 (608)
+..+|+|+|+.++|||||+++|+. +.+...... .....++ ...+...++.+++|||||+.+|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 356899999999999999999997 333322110 0011122 223456778999999999999999
Q ss_pred HHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC--------------------
Q psy3301 73 ELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-------------------- 132 (608)
Q Consensus 73 ~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-------------------- 132 (608)
.+..+++.+|++++|+|+++....+... .|. .+. ..++|+++|+||+|+.....
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~qt~~-~l~-~a~----~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~ 157 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQTRF-VTK-KAF----AYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQ 157 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHHHHH-HHH-HHH----HcCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccc
Confidence 9999999999999999998764433322 333 333 24789999999999864321
Q ss_pred -----cccCcccCc----------CHHHHHHHHHHHHhCCC
Q psy3301 133 -----VESSAKTLK----------NISEMFYYAQKAVLHPM 158 (608)
Q Consensus 133 -----~e~SAk~~~----------~i~~lf~~l~~~i~~~~ 158 (608)
+.+||++|. |+..+++.+...+..|.
T Consensus 158 ~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~ 198 (607)
T PRK10218 158 LDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPD 198 (607)
T ss_pred cCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCC
Confidence 678999998 58888888887776553
No 335
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.46 E-value=3.5e-13 Score=143.44 Aligned_cols=140 Identities=21% Similarity=0.177 Sum_probs=96.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCc-----------------c------C------CCcee
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPD-----------------V------T------PEMVP 58 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~-----------------~------~------~~~~~ 58 (608)
+..++|+++|..++|||||+++|.+..............++... + + .....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 46789999999999999999999754221100000000111100 0 0 12467
Q ss_pred EEEEeCCCCCCChHHHHHHHHhcCcEEEEEEcCCh----hhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC--
Q psy3301 59 THIVDYSEVDQTVDELTEEIQKAHVICLVYSVVDD----ASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-- 132 (608)
Q Consensus 59 ~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~~~----~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-- 132 (608)
+.+|||||+++|...+...+..+|++++|+|+++. ++.+.+. .+.. . ...|+++|+||+|+.+...
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~-----~l~~--~-gi~~iIVvvNK~Dl~~~~~~~ 153 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLM-----ALEI--I-GIKNIVIVQNKIDLVSKEKAL 153 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHH-----HHHH--c-CCCeEEEEEEccccCCHHHHH
Confidence 99999999999988888888999999999999964 3333332 2221 1 1247999999999974311
Q ss_pred --------------------cccCcccCcCHHHHHHHHHHHHh
Q psy3301 133 --------------------VESSAKTLKNISEMFYYAQKAVL 155 (608)
Q Consensus 133 --------------------~e~SAk~~~~i~~lf~~l~~~i~ 155 (608)
+++||++|.|++++++++.+.+.
T Consensus 154 ~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 154 ENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 77999999999999999987654
No 336
>KOG4423|consensus
Probab=99.45 E-value=1e-14 Score=130.42 Aligned_cols=147 Identities=15% Similarity=0.147 Sum_probs=117.5
Q ss_pred CCceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecce--------EeCCcceeEeeeeccccc---
Q psy3301 406 TRNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINTT--------TVYGQEKYLVLKEILVRD--- 474 (608)
Q Consensus 406 ~r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~~--------~v~Gqe~~~~l~~~~~~~--- 474 (608)
..+.||+.|+|+.|||||+++.|++...|+..|..|+++++-......+.. +++|||+|-+|+.+||++
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~ 101 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG 101 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence 467899999999999999999999999999999988887332233333332 239999999999999998
Q ss_pred ---ccccCCCCcc-ccc--------c---cccCCCCCcEEEEEeCCCCCcchh-cccccHHHHHHHcCCCCceEEc--cC
Q psy3301 475 ---EQLPVLLPVD-VDC--------D---KYFSTSKIPVMLVAGKSDMPRARQ-DYLMQPDIFCETHKLSPAHSFS--AA 536 (608)
Q Consensus 475 ---v~d~~l~~~~-~~~--------~---~~~~~~~~p~ilVgnK~DL~~~~~-~~~~~~~~~~~~~~~~~~~~~S--~~ 536 (608)
||| ++..- ..+ + +-.....+|||+.+||||+...-. ....+.++|++++|+..++++| .+
T Consensus 102 ~~iVfd--vt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Ken 179 (229)
T KOG4423|consen 102 AFIVFD--VTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKEN 179 (229)
T ss_pred eEEEEE--ccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccc
Confidence 788 66544 111 1 333467899999999999985432 2357789999999999999999 79
Q ss_pred CCHHHHHHHHHHHHcCCC
Q psy3301 537 NNDREVFVKLATMAAFPR 554 (608)
Q Consensus 537 ~~v~e~F~~l~~~a~~p~ 554 (608)
.|+.|+-..++++++.-+
T Consensus 180 kni~Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 180 KNIPEAQRELVEKILVND 197 (229)
T ss_pred cChhHHHHHHHHHHHhhc
Confidence 999999999999998766
No 337
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.45 E-value=5.4e-13 Score=127.23 Aligned_cols=114 Identities=21% Similarity=0.172 Sum_probs=78.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHcCCCC----------------CcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHH
Q psy3301 10 NVRILLLGDRHVGKTSLILSLVSEEFP----------------ELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDE 73 (608)
Q Consensus 10 ~~kI~lvG~~~vGKTSLi~~l~~~~~~----------------~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~ 73 (608)
.++|+++|..++|||||+++|+..... .......+.......+..++..+.++||||+..+...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 589999999999999999999864100 0001111222222334556778999999999988888
Q ss_pred HHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCc-EEEEEeCcCCCC
Q psy3301 74 LTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLP-IVLVGNKVDLVD 129 (608)
Q Consensus 74 ~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~ 129 (608)
....+..+|++++|+|++..-.-+.. ..+..+.. .++| +|+|.||+|+..
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~~~~--~~~~~~~~----~~~~~iIvviNK~D~~~ 132 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMPQTR--EHLLLARQ----VGVPYIVVFLNKADMVD 132 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcHHHH--HHHHHHHH----cCCCcEEEEEeCCCCCC
Confidence 88889999999999999875332221 22333332 3566 789999999863
No 338
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.45 E-value=5.1e-13 Score=142.04 Aligned_cols=145 Identities=21% Similarity=0.182 Sum_probs=97.9
Q ss_pred ccccCCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCcc-----------------------C------
Q psy3301 3 MKVSLRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDV-----------------------T------ 53 (608)
Q Consensus 3 ~~~~~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~-----------------------~------ 53 (608)
|-+..++.++|+++|+.++|||||+.+|.+..............++...+ .
T Consensus 2 ~~~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (411)
T PRK04000 2 MWEKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSET 81 (411)
T ss_pred CcccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccc
Confidence 44567788999999999999999999996531111100000111221110 0
Q ss_pred CCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEcCCh----hhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCC
Q psy3301 54 PEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSVVDD----ASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVD 129 (608)
Q Consensus 54 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~~~----~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 129 (608)
.....++||||||+++|.......+..+|++++|+|++++ ++.+.+. .+.. . ...|+++|+||+|+.+
T Consensus 82 ~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~-----~l~~--~-~i~~iiVVlNK~Dl~~ 153 (411)
T PRK04000 82 ELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLM-----ALDI--I-GIKNIVIVQNKIDLVS 153 (411)
T ss_pred ccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHH-----HHHH--c-CCCcEEEEEEeecccc
Confidence 0025789999999998877777777788999999999964 3333322 2221 1 1237899999999865
Q ss_pred CCC----------------------cccCcccCcCHHHHHHHHHHHHh
Q psy3301 130 YST----------------------VESSAKTLKNISEMFYYAQKAVL 155 (608)
Q Consensus 130 ~~~----------------------~e~SAk~~~~i~~lf~~l~~~i~ 155 (608)
... +++||++|.|++++++.+.+.+.
T Consensus 154 ~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 154 KERALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred chhHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 211 77999999999999999887663
No 339
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.45 E-value=2.6e-13 Score=145.74 Aligned_cols=138 Identities=17% Similarity=0.148 Sum_probs=94.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCCc-------------------------------CCCCCcceEecCccCCC
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPEL-------------------------------VPSKAEEITIPPDVTPE 55 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~-------------------------------~~~~~~~~~i~~~~~~~ 55 (608)
.++.++|+++|.+++|||||+++|+....... .....+.......+...
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 45689999999999999999999995432211 11122233333345567
Q ss_pred ceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC---
Q psy3301 56 MVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST--- 132 (608)
Q Consensus 56 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--- 132 (608)
++.+.+|||||+++|.......+..+|++++|+|+++..++......+...+.. . ...|+++|+||+|+.....
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~--~-~~~~iivviNK~Dl~~~~~~~~ 159 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLART--L-GINQLIVAINKMDAVNYDEKRY 159 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH--c-CCCeEEEEEEccccccccHHHH
Confidence 789999999999988776667788999999999998731221111122222331 1 1246999999999964110
Q ss_pred -----------------------cccCcccCcCHHHHH
Q psy3301 133 -----------------------VESSAKTLKNISEMF 147 (608)
Q Consensus 133 -----------------------~e~SAk~~~~i~~lf 147 (608)
+++||++|.|+++.+
T Consensus 160 ~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 160 EEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 678999999998755
No 340
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.45 E-value=8.1e-14 Score=130.10 Aligned_cols=135 Identities=13% Similarity=0.061 Sum_probs=91.7
Q ss_pred EEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCC---CceEecceEeCCcceeEeeeeccccc------ccccCCC
Q psy3301 411 VCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECD---PPYTINTTTVYGQEKYLVLKEILVRD------EQLPVLL 481 (608)
Q Consensus 411 k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~---~~~~i~~~~v~Gqe~~~~l~~~~~~~------v~d~~l~ 481 (608)
+++++|++|||||||+++|.++ +...+.+|.+.+... ..+.++-.+++|++++..++..++++ ||| .+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D--~s 77 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD--SS 77 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE--CC
Confidence 4799999999999999999987 766777776652110 12334445559999999888888877 778 66
Q ss_pred Ccc--cccc-------cccCCCCCcEEEEEeCCCCCcchh----cccccHHHHHHHcCCC-CceEEc--cC------CCH
Q psy3301 482 PVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQ----DYLMQPDIFCETHKLS-PAHSFS--AA------NND 539 (608)
Q Consensus 482 ~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~----~~~~~~~~~~~~~~~~-~~~~~S--~~------~~v 539 (608)
+.+ ..+. +.....++|+++|+||+|++..++ +.....++++++.+.+ ..+++| ++ .|+
T Consensus 78 ~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~ 157 (167)
T cd04161 78 DDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSI 157 (167)
T ss_pred chhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCH
Confidence 654 2222 122235799999999999986552 2223344555554443 244477 56 799
Q ss_pred HHHHHHHHH
Q psy3301 540 REVFVKLAT 548 (608)
Q Consensus 540 ~e~F~~l~~ 548 (608)
.+.|.+|++
T Consensus 158 ~~~~~wl~~ 166 (167)
T cd04161 158 VEGLRWLLA 166 (167)
T ss_pred HHHHHHHhc
Confidence 999999975
No 341
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.44 E-value=7.3e-13 Score=123.03 Aligned_cols=135 Identities=19% Similarity=0.173 Sum_probs=86.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCC----------hHHHHHHHHh-
Q psy3301 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQT----------VDELTEEIQK- 80 (608)
Q Consensus 12 kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~~~- 80 (608)
.|+++|++|+|||||++++++..+.....+..........+... ..+.+|||+|.... ......++..
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENR 79 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEcc-CeEEEecCCCccccccCHHHHHHHHHHHHHHHHhC
Confidence 48999999999999999999766554433332111111111111 27899999995432 2333444443
Q ss_pred --cCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC---------------------cccCc
Q psy3301 81 --AHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST---------------------VESSA 137 (608)
Q Consensus 81 --ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~---------------------~e~SA 137 (608)
.+++++++|.++..+.... .....+.. .+.|+++|+||+|+..... +++||
T Consensus 80 ~~~~~~~~v~d~~~~~~~~~~--~~~~~l~~----~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa 153 (170)
T cd01876 80 ENLKGVVLLIDSRHGPTEIDL--EMLDWLEE----LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSS 153 (170)
T ss_pred hhhhEEEEEEEcCcCCCHhHH--HHHHHHHH----cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEec
Confidence 5688999998766332221 12222221 2579999999999853221 68999
Q ss_pred ccCcCHHHHHHHHHHH
Q psy3301 138 KTLKNISEMFYYAQKA 153 (608)
Q Consensus 138 k~~~~i~~lf~~l~~~ 153 (608)
+++.|+.++++++.+.
T Consensus 154 ~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 154 LKGQGIDELRALIEKW 169 (170)
T ss_pred CCCCCHHHHHHHHHHh
Confidence 9999999999988765
No 342
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.44 E-value=2e-13 Score=129.42 Aligned_cols=141 Identities=20% Similarity=0.173 Sum_probs=95.5
Q ss_pred eEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCC--------CceEecceEeCCcceeEeeeeccccc------
Q psy3301 409 VYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECD--------PPYTINTTTVYGQEKYLVLKEILVRD------ 474 (608)
Q Consensus 409 ~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~--------~~~~i~~~~v~Gqe~~~~l~~~~~~~------ 474 (608)
-+||+++|++|||||||+++++.+.+... .+|.+.+... ..+.++-.+++|+++|..+++.++++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 37999999999999999999999988754 3455442211 12334445669999998888887776
Q ss_pred ccccCCCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCC-----CCceEEc--cCCC
Q psy3301 475 EQLPVLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKL-----SPAHSFS--AANN 538 (608)
Q Consensus 475 v~d~~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~-----~~~~~~S--~~~~ 538 (608)
+|| .++.+ ..+. ++....++|+++|+||+|+.+.. ...+...++.-... .+.+++| ++.|
T Consensus 82 v~D--~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~g 157 (183)
T cd04152 82 VVD--SVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNAL--SVSEVEKLLALHELSASTPWHVQPACAIIGEG 157 (183)
T ss_pred EEE--CCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccC--CHHHHHHHhCccccCCCCceEEEEeecccCCC
Confidence 778 66643 1111 22234679999999999986422 12223333321111 1256788 8999
Q ss_pred HHHHHHHHHHHHcCCC
Q psy3301 539 DREVFVKLATMAAFPR 554 (608)
Q Consensus 539 v~e~F~~l~~~a~~p~ 554 (608)
++++|..|++.+...+
T Consensus 158 i~~l~~~l~~~l~~~~ 173 (183)
T cd04152 158 LQEGLEKLYEMILKRR 173 (183)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999886554
No 343
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.43 E-value=1.4e-13 Score=126.39 Aligned_cols=135 Identities=22% Similarity=0.292 Sum_probs=97.6
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceE-------ecceEeCCcceeEeeeeccccc------cc
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYT-------INTTTVYGQEKYLVLKEILVRD------EQ 476 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~-------i~~~~v~Gqe~~~~l~~~~~~~------v~ 476 (608)
+||+++|++|||||||+++++++.+...+.++.+.+.....+. +.-.+.+|++.+..+...+.++ ++
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 4899999999999999999999999887665655522222222 2223448887777666666554 66
Q ss_pred ccCCCCcc--cccccc------cCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHHHH
Q psy3301 477 LPVLLPVD--VDCDKY------FSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFVKL 546 (608)
Q Consensus 477 d~~l~~~~--~~~~~~------~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~~l 546 (608)
| .++.+ .....+ .....+|+++|+||+|+....+...++..+++++++.+ ++++| ++.|++++|..|
T Consensus 81 d--~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i~~~~~~i 157 (159)
T cd00154 81 D--ITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLL-FFETSAKTGENVEELFQSL 157 (159)
T ss_pred E--CCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCe-EEEEecCCCCCHHHHHHHH
Confidence 6 55533 222211 12367999999999999755666778899999998876 88888 799999999988
Q ss_pred H
Q psy3301 547 A 547 (608)
Q Consensus 547 ~ 547 (608)
+
T Consensus 158 ~ 158 (159)
T cd00154 158 A 158 (159)
T ss_pred h
Confidence 6
No 344
>KOG0030|consensus
Probab=99.43 E-value=2.7e-13 Score=115.37 Aligned_cols=144 Identities=15% Similarity=0.201 Sum_probs=112.9
Q ss_pred hHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHHHh
Q psy3301 170 TPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQ 249 (608)
Q Consensus 170 ~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~~~ 249 (608)
++.....++++|.++|..+||.|+..+..+.+|. +|.+|++.++.+........ -.+ -..|+|+.|+.+++....
T Consensus 6 ~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRa-lG~nPT~aeV~k~l~~~~~~---~~~-~~rl~FE~fLpm~q~vak 80 (152)
T KOG0030|consen 6 TPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRA-LGQNPTNAEVLKVLGQPKRR---EMN-VKRLDFEEFLPMYQQVAK 80 (152)
T ss_pred CcchHHHHHHHHHHHhccCcccccHHHHHHHHHH-hcCCCcHHHHHHHHcCcccc---hhh-hhhhhHHHHHHHHHHHHh
Confidence 4456688999999999999999999999999997 89999999987776554333 111 368999999999876554
Q ss_pred cCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCCCCC
Q psy3301 250 RGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPEC 329 (608)
Q Consensus 250 ~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~~~~ 329 (608)
....- .++.+.+-.+.||++++|.|...||+.++.++|+..
T Consensus 81 nk~q~---------------------------------------t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl 121 (152)
T KOG0030|consen 81 NKDQG---------------------------------------TYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKL 121 (152)
T ss_pred ccccC---------------------------------------cHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhc
Confidence 42221 156677779999999999999999999999998655
Q ss_pred CCCCccccccceecCCCCccchhhHHhHh
Q psy3301 330 PPWTDREMRAMVATNSKGWITMQGFLCYW 358 (608)
Q Consensus 330 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~w 358 (608)
...+++.+..- -.|.+|.|+|+.|+.+-
T Consensus 122 ~eeEVe~Llag-~eD~nG~i~YE~fVk~i 149 (152)
T KOG0030|consen 122 TEEEVEELLAG-QEDSNGCINYEAFVKHI 149 (152)
T ss_pred cHHHHHHHHcc-ccccCCcCcHHHHHHHH
Confidence 55545555543 35678999999999864
No 345
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.43 E-value=3.7e-13 Score=126.51 Aligned_cols=133 Identities=14% Similarity=0.068 Sum_probs=89.7
Q ss_pred ceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCC---CceEecceEeCCcceeEeeeeccccc------cccc
Q psy3301 408 NVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECD---PPYTINTTTVYGQEKYLVLKEILVRD------EQLP 478 (608)
Q Consensus 408 ~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~---~~~~i~~~~v~Gqe~~~~l~~~~~~~------v~d~ 478 (608)
..+||+++|++|||||||+++++.+.+.. +.+|++.+... ..+.+.-.+++|+++|..+++.++++ |||
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D- 91 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVID- 91 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEE-
Confidence 35899999999999999999999988875 44565541110 11223334559999988887777666 788
Q ss_pred CCCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCC-------CceEEc--cCCCHH
Q psy3301 479 VLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLS-------PAHSFS--AANNDR 540 (608)
Q Consensus 479 ~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~-------~~~~~S--~~~~v~ 540 (608)
.++.+ .... +.....++|+++|+||+|+.... ..+++++.++.. +++++| ++.|++
T Consensus 92 -~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~-----~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~ 165 (174)
T cd04153 92 -STDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAM-----TPAEISESLGLTSIRDHTWHIQGCCALTGEGLP 165 (174)
T ss_pred -CCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCC-----CHHHHHHHhCcccccCCceEEEecccCCCCCHH
Confidence 66554 1111 11223579999999999997521 223344443321 267888 899999
Q ss_pred HHHHHHHH
Q psy3301 541 EVFVKLAT 548 (608)
Q Consensus 541 e~F~~l~~ 548 (608)
++|..|++
T Consensus 166 e~~~~l~~ 173 (174)
T cd04153 166 EGLDWIAS 173 (174)
T ss_pred HHHHHHhc
Confidence 99999975
No 346
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.42 E-value=9.5e-13 Score=121.96 Aligned_cols=116 Identities=23% Similarity=0.293 Sum_probs=80.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCcc-CCCceeEEEEeCCCCCCChHHHHHH---HHhcCcEEE
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDV-TPEMVPTHIVDYSEVDQTVDELTEE---IQKAHVICL 86 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~---~~~ad~iil 86 (608)
-.|+|+|++|+|||+|..+|..+...+.++....... ..+ ...+..+.++|+||+++.+...... +..+.+||+
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~~--~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIf 81 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNIA--YNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIF 81 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B---SSEEEE--CCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEE
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCce--EEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEE
Confidence 4689999999999999999999977665555422222 222 3345679999999999998876555 889999999
Q ss_pred EEEcCC-hhhHHHHHHhHHHHHhhh-ccCCCCcEEEEEeCcCCC
Q psy3301 87 VYSVVD-DASIDRLSSHWLPFLRNC-LVDTCLPIVLVGNKVDLV 128 (608)
Q Consensus 87 V~d~~~-~~s~~~~~~~~~~~i~~~-~~~~~~piilv~nK~Dl~ 128 (608)
|.|.+. ......+.++++..+... .....+|++|++||+|+.
T Consensus 82 vvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~ 125 (181)
T PF09439_consen 82 VVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLF 125 (181)
T ss_dssp EEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTST
T ss_pred EEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccc
Confidence 999874 456677776777777654 345688999999999974
No 347
>KOG1673|consensus
Probab=99.42 E-value=2.9e-13 Score=117.37 Aligned_cols=145 Identities=21% Similarity=0.337 Sum_probs=115.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEec--CccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEE
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIP--PDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICL 86 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iil 86 (608)
-.+||.++|++.+|||||+-.++++++.+.+..+....... ..+.+..+.+.|||..|++++...+....+++-+|++
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlF 98 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILF 98 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEE
Confidence 36899999999999999999999999876543332222222 2234556788999999999999999999999999999
Q ss_pred EEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC----------------------cccCcccCcCHH
Q psy3301 87 VYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST----------------------VESSAKTLKNIS 144 (608)
Q Consensus 87 V~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------------------~e~SAk~~~~i~ 144 (608)
+||++.+.++..+. .|++.-+. .+...+| |+||+|-|+--.-. +.||+....||+
T Consensus 99 mFDLt~r~TLnSi~-~WY~QAr~-~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~ 175 (205)
T KOG1673|consen 99 MFDLTRRSTLNSIK-EWYRQARG-LNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQ 175 (205)
T ss_pred EEecCchHHHHHHH-HHHHHHhc-cCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHH
Confidence 99999999999999 89988875 3445556 56899999643221 899999999999
Q ss_pred HHHHHHHHHHhC
Q psy3301 145 EMFYYAQKAVLH 156 (608)
Q Consensus 145 ~lf~~l~~~i~~ 156 (608)
.+|..+...+..
T Consensus 176 KIFK~vlAklFn 187 (205)
T KOG1673|consen 176 KIFKIVLAKLFN 187 (205)
T ss_pred HHHHHHHHHHhC
Confidence 999998877754
No 348
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.41 E-value=2e-12 Score=142.67 Aligned_cols=134 Identities=18% Similarity=0.247 Sum_probs=89.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcc----eEecCccC----CCc-----e-----eEEEEeCCCCCCC
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEE----ITIPPDVT----PEM-----V-----PTHIVDYSEVDQT 70 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~----~~i~~~~~----~~~-----~-----~~~i~Dt~G~~~~ 70 (608)
+.-.|+++|++++|||||+++|.+.......+...+. ...+.+.. ... . .+.+|||||++.|
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 3457999999999999999999876544333221111 11111100 000 1 2689999999999
Q ss_pred hHHHHHHHHhcCcEEEEEEcCC---hhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCC-C-----C-cccCcccC
Q psy3301 71 VDELTEEIQKAHVICLVYSVVD---DASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDY-S-----T-VESSAKTL 140 (608)
Q Consensus 71 ~~~~~~~~~~ad~iilV~d~~~---~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~-~-----~-~e~SAk~~ 140 (608)
...+...++.+|++++|+|+++ +++++.+. .+. ..++|+++|+||+|+... . . +++|++++
T Consensus 85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~-----~~~----~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~ 155 (586)
T PRK04004 85 TNLRKRGGALADIAILVVDINEGFQPQTIEAIN-----ILK----RRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQS 155 (586)
T ss_pred HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH-----HHH----HcCCCEEEEEECcCCchhhhhhcCchHHHHHhhhh
Confidence 9888888999999999999997 56666554 222 137899999999998521 1 0 55555555
Q ss_pred cCHHHHHHHHH
Q psy3301 141 KNISEMFYYAQ 151 (608)
Q Consensus 141 ~~i~~lf~~l~ 151 (608)
.++.+.|....
T Consensus 156 ~~v~~~f~~~l 166 (586)
T PRK04004 156 QRVQQELEEKL 166 (586)
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 349
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.41 E-value=2.2e-12 Score=142.34 Aligned_cols=142 Identities=20% Similarity=0.189 Sum_probs=103.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcC--CCCCc--CCC---------CCcceEe---cCccCCCceeEEEEeCCCCCCChHHH
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSE--EFPEL--VPS---------KAEEITI---PPDVTPEMVPTHIVDYSEVDQTVDEL 74 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~--~~~~~--~~~---------~~~~~~i---~~~~~~~~~~~~i~Dt~G~~~~~~~~ 74 (608)
.+|+|+|+.++|||||+.+|+.. .+... +.. .....++ ...+.+.++.++||||||+.+|...+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 47999999999999999999963 23221 110 0001122 12345567899999999999999999
Q ss_pred HHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC----------------------
Q psy3301 75 TEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST---------------------- 132 (608)
Q Consensus 75 ~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~---------------------- 132 (608)
...++.+|++++|+|+++... .... .|+..+.. .++|+|+|+||+|+.....
T Consensus 82 ~~~l~~aD~alLVVDa~~G~~-~qT~-~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~ 155 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEGPM-PQTR-FVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLD 155 (594)
T ss_pred HHHHHhCCEEEEEEeCCCCCc-HHHH-HHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhcccccccc
Confidence 999999999999999987532 2223 45444442 4689999999999864321
Q ss_pred ---cccCcccCc----------CHHHHHHHHHHHHhCCC
Q psy3301 133 ---VESSAKTLK----------NISEMFYYAQKAVLHPM 158 (608)
Q Consensus 133 ---~e~SAk~~~----------~i~~lf~~l~~~i~~~~ 158 (608)
+.+||++|. |+..+|+.+.+.+..|.
T Consensus 156 ~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~ 194 (594)
T TIGR01394 156 FPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPK 194 (594)
T ss_pred CcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCC
Confidence 568999996 79999999998886653
No 350
>KOG0037|consensus
Probab=99.40 E-value=8.8e-13 Score=121.71 Aligned_cols=132 Identities=16% Similarity=0.202 Sum_probs=117.6
Q ss_pred HHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHHHhcCCC
Q psy3301 174 IKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQRGRS 253 (608)
Q Consensus 174 ~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~~~~~~~ 253 (608)
...+...|...|+|+.|.|+.+||...+..+-..+++.+.+.-|+.+++.+ .+|.|.++||..|++.
T Consensus 56 ~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~------~~G~i~f~EF~~Lw~~------- 122 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRD------NSGTIGFKEFKALWKY------- 122 (221)
T ss_pred cHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCC------CCCccCHHHHHHHHHH-------
Confidence 447899999999999999999999999998788999999999999999999 7999999999999653
Q ss_pred cchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCCCCCCCCC
Q psy3301 254 HTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPECPPWT 333 (608)
Q Consensus 254 e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~~~~~~~~ 333 (608)
.+.++++|+.||+|++|.|+..||+++|..+|...+|.-
T Consensus 123 -----------------------------------------i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~ 161 (221)
T KOG0037|consen 123 -----------------------------------------INQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQF 161 (221)
T ss_pred -----------------------------------------HHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHH
Confidence 466899999999999999999999999999997777765
Q ss_pred ccccccceecCCCCccchhhHHhHhh
Q psy3301 334 DREMRAMVATNSKGWITMQGFLCYWI 359 (608)
Q Consensus 334 ~~~~~~~~d~~~~g~i~~~ef~~~w~ 359 (608)
.+-+.+..|.-+.|.|.|++|+++-.
T Consensus 162 ~~~lv~kyd~~~~g~i~FD~FI~ccv 187 (221)
T KOG0037|consen 162 YNLLVRKYDRFGGGRIDFDDFIQCCV 187 (221)
T ss_pred HHHHHHHhccccCCceeHHHHHHHHH
Confidence 66677778877799999999998743
No 351
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.39 E-value=1.7e-13 Score=126.67 Aligned_cols=129 Identities=19% Similarity=0.186 Sum_probs=84.5
Q ss_pred EEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCc----CCCceEecceEeCCcceeEeeeeccccc------ccccCC
Q psy3301 411 VCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVE----CDPPYTINTTTVYGQEKYLVLKEILVRD------EQLPVL 480 (608)
Q Consensus 411 k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~----~~~~~~i~~~~v~Gqe~~~~l~~~~~~~------v~d~~l 480 (608)
+|+++|++|||||||+++|.++.+... .+|.+.+. +...+.+.-.+++|++++..++..++++ ++| .
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D--~ 77 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD--S 77 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE--C
Confidence 589999999999999999999988654 34544310 0112334444558998887776666555 677 5
Q ss_pred CCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHH---------cCCCCceEEc--cCCCHH
Q psy3301 481 LPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCET---------HKLSPAHSFS--AANNDR 540 (608)
Q Consensus 481 ~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~---------~~~~~~~~~S--~~~~v~ 540 (608)
++.. ..++ +.....++|+++|+||+|+.... ..+++... .+. +++++| ++.|++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----~~~~i~~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~ 151 (160)
T cd04156 78 SDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL-----TAEEITRRFKLKKYCSDRDW-YVQPCSAVTGEGLA 151 (160)
T ss_pred CcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc-----CHHHHHHHcCCcccCCCCcE-EEEecccccCCChH
Confidence 5543 2222 11122689999999999996421 12223222 222 267788 899999
Q ss_pred HHHHHHHH
Q psy3301 541 EVFVKLAT 548 (608)
Q Consensus 541 e~F~~l~~ 548 (608)
++|..|++
T Consensus 152 ~~~~~i~~ 159 (160)
T cd04156 152 EAFRKLAS 159 (160)
T ss_pred HHHHHHhc
Confidence 99999975
No 352
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.39 E-value=2e-12 Score=143.43 Aligned_cols=131 Identities=19% Similarity=0.197 Sum_probs=95.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC---CCCcCCCCCcceEecCc---c-CCCceeEEEEeCCCCCCChHHHHHHHHhcCcE
Q psy3301 12 RILLLGDRHVGKTSLILSLVSEE---FPELVPSKAEEITIPPD---V-TPEMVPTHIVDYSEVDQTVDELTEEIQKAHVI 84 (608)
Q Consensus 12 kI~lvG~~~vGKTSLi~~l~~~~---~~~~~~~~~~~~~i~~~---~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 84 (608)
-|+++|+.++|||||+++|.+.. +.+.... ..|+... + ...+..+.+|||||+++|...+...+..+|++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~r---GiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~ 78 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKR---GMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHA 78 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccC---CceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEE
Confidence 58899999999999999999643 2222211 1222211 1 22345689999999999988888889999999
Q ss_pred EEEEEcCC---hhhHHHHHHhHHHHHhhhccCCCCc-EEEEEeCcCCCCCCC----------------------cccCcc
Q psy3301 85 CLVYSVVD---DASIDRLSSHWLPFLRNCLVDTCLP-IVLVGNKVDLVDYST----------------------VESSAK 138 (608)
Q Consensus 85 ilV~d~~~---~~s~~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~----------------------~e~SAk 138 (608)
++|+|+++ +++.+.+. .+.. .++| ++||+||+|+.+... +++||+
T Consensus 79 lLVVda~eg~~~qT~ehl~-----il~~----lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~ 149 (614)
T PRK10512 79 LLVVACDDGVMAQTREHLA-----ILQL----TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAAT 149 (614)
T ss_pred EEEEECCCCCcHHHHHHHH-----HHHH----cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCC
Confidence 99999987 44444432 2331 2355 679999999975321 789999
Q ss_pred cCcCHHHHHHHHHHHH
Q psy3301 139 TLKNISEMFYYAQKAV 154 (608)
Q Consensus 139 ~~~~i~~lf~~l~~~i 154 (608)
+|.|++++++.+.+..
T Consensus 150 tG~gI~~L~~~L~~~~ 165 (614)
T PRK10512 150 EGRGIDALREHLLQLP 165 (614)
T ss_pred CCCCCHHHHHHHHHhh
Confidence 9999999999987654
No 353
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.39 E-value=8.1e-13 Score=122.03 Aligned_cols=130 Identities=15% Similarity=0.017 Sum_probs=87.1
Q ss_pred EEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCC---CceEecceEeCCcceeEeeeeccccc------ccccCCC
Q psy3301 411 VCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECD---PPYTINTTTVYGQEKYLVLKEILVRD------EQLPVLL 481 (608)
Q Consensus 411 k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~---~~~~i~~~~v~Gqe~~~~l~~~~~~~------v~d~~l~ 481 (608)
||+++|++|||||||++++..+.+.. +.+|.+.+... ..+.+.-++++|+++|..+++.++.. ++| ++
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d--~~ 77 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD--ST 77 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE--CC
Confidence 68999999999999999998887764 34455441111 12334445559999988887777665 677 66
Q ss_pred Ccc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCC-------CceEEc--cCCCHHHHH
Q psy3301 482 PVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLS-------PAHSFS--AANNDREVF 543 (608)
Q Consensus 482 ~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~-------~~~~~S--~~~~v~e~F 543 (608)
+.. .... +.....+.|+++|+||+|+.+.. ...++++.++.. +++++| ++.|++++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 152 (158)
T cd04151 78 DRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL-----SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGM 152 (158)
T ss_pred CHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC-----CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHH
Confidence 543 1111 11223579999999999996432 123344333221 378899 899999999
Q ss_pred HHHHH
Q psy3301 544 VKLAT 548 (608)
Q Consensus 544 ~~l~~ 548 (608)
..|++
T Consensus 153 ~~l~~ 157 (158)
T cd04151 153 DWLVN 157 (158)
T ss_pred HHHhc
Confidence 99975
No 354
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.39 E-value=4e-12 Score=123.92 Aligned_cols=112 Identities=16% Similarity=0.156 Sum_probs=75.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCcCCCC-----------CcceEec-----C--c--------------------cC
Q psy3301 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSK-----------AEEITIP-----P--D--------------------VT 53 (608)
Q Consensus 12 kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~-----------~~~~~i~-----~--~--------------------~~ 53 (608)
||+++|+.++|||||+.+|..+.+....... ....+++ . + +.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 6899999999999999999987665321100 0000000 0 0 11
Q ss_pred CCceeEEEEeCCCCCCChHHHHHHHH--hcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCC
Q psy3301 54 PEMVPTHIVDYSEVDQTVDELTEEIQ--KAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVD 129 (608)
Q Consensus 54 ~~~~~~~i~Dt~G~~~~~~~~~~~~~--~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 129 (608)
..+..+.++||||+++|.......+. .+|++++|+|++....-... .++..+.. .++|+++|.||+|+.+
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~--~~l~~l~~----~~ip~ivvvNK~D~~~ 152 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTK--EHLGLALA----LNIPVFVVVTKIDLAP 152 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHH--HHHHHHHH----cCCCEEEEEECccccC
Confidence 22457899999999988776666664 68999999998876442222 34444442 3689999999999854
No 355
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.38 E-value=5.2e-12 Score=143.32 Aligned_cols=122 Identities=15% Similarity=0.039 Sum_probs=85.8
Q ss_pred ccccCCCccEEEEEcCCCCCHHHHHHHHHcCCCCCc----CCC--------------CCcceEecCccCCCceeEEEEeC
Q psy3301 3 MKVSLRRNVRILLLGDRHVGKTSLILSLVSEEFPEL----VPS--------------KAEEITIPPDVTPEMVPTHIVDY 64 (608)
Q Consensus 3 ~~~~~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~----~~~--------------~~~~~~i~~~~~~~~~~~~i~Dt 64 (608)
+.....+..+|+|+|.+++|||||+++|+...-... +.. ..+.......+...+..+++|||
T Consensus 3 ~~~~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDT 82 (689)
T TIGR00484 3 RTTDLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDT 82 (689)
T ss_pred CcCccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEEC
Confidence 334455567999999999999999999985322110 110 01111112233456788999999
Q ss_pred CCCCCChHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCC
Q psy3301 65 SEVDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDY 130 (608)
Q Consensus 65 ~G~~~~~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 130 (608)
||+.++...+...++.+|++++|+|+++....+... .|. .+. ..++|+++|+||+|+...
T Consensus 83 PG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~-~~~----~~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 83 PGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSET-VWR-QAN----RYEVPRIAFVNKMDKTGA 142 (689)
T ss_pred CCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHH-HHH-HHH----HcCCCEEEEEECCCCCCC
Confidence 999999888889999999999999999876555433 333 333 236899999999998753
No 356
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.38 E-value=1.3e-12 Score=127.45 Aligned_cols=112 Identities=17% Similarity=0.080 Sum_probs=74.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCc-------------------------------CCCCCcceEecCccCCCceeEE
Q psy3301 12 RILLLGDRHVGKTSLILSLVSEEFPEL-------------------------------VPSKAEEITIPPDVTPEMVPTH 60 (608)
Q Consensus 12 kI~lvG~~~vGKTSLi~~l~~~~~~~~-------------------------------~~~~~~~~~i~~~~~~~~~~~~ 60 (608)
+|+++|..++|||||+.+|+...-... .....+.......+...+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 489999999999999999974321110 0111122222333455678999
Q ss_pred EEeCCCCCCChHHHHHHHHhcCcEEEEEEcCChh-------hHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCC
Q psy3301 61 IVDYSEVDQTVDELTEEIQKAHVICLVYSVVDDA-------SIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLV 128 (608)
Q Consensus 61 i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~~~~-------s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 128 (608)
+|||||+..+...+...++.+|++++|+|+++.. ..+... .|. .... ....|+++|+||+|+.
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~-~~~-~~~~---~~~~~iiivvNK~Dl~ 150 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTRE-HAL-LART---LGVKQLIVAVNKMDDV 150 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHH-HHH-HHHH---cCCCeEEEEEEccccc
Confidence 9999999888777777788999999999999842 111111 222 2221 1235899999999997
No 357
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.38 E-value=9.1e-13 Score=125.66 Aligned_cols=134 Identities=15% Similarity=0.082 Sum_probs=88.9
Q ss_pred eEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEec-----ceEeCCcceeEeeeeccccc------ccc
Q psy3301 409 VYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTIN-----TTTVYGQEKYLVLKEILVRD------EQL 477 (608)
Q Consensus 409 ~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~-----~~~v~Gqe~~~~l~~~~~~~------v~d 477 (608)
.+|++++|++|||||||++++.++.+. .+.+|.+.+ ...+.++ -.+++|++.+..++..+++. ++|
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~--~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D 95 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT--SEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVD 95 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc--eEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEE
Confidence 479999999999999999999998875 454555441 1223333 34458988887766666555 677
Q ss_pred cCCCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCC---------------CCceEE
Q psy3301 478 PVLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKL---------------SPAHSF 533 (608)
Q Consensus 478 ~~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~---------------~~~~~~ 533 (608)
+++.+ ..+. +.....+.|+++|+||+|+.. .+..++.+.++..... .+.+++
T Consensus 96 --~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (190)
T cd00879 96 --AADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMC 171 (190)
T ss_pred --CCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEEEe
Confidence 55543 1111 222236799999999999964 2334444444432211 126888
Q ss_pred c--cCCCHHHHHHHHHHH
Q psy3301 534 S--AANNDREVFVKLATM 549 (608)
Q Consensus 534 S--~~~~v~e~F~~l~~~ 549 (608)
| ++.|++++|..|++.
T Consensus 172 Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 172 SVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred EecCCCChHHHHHHHHhh
Confidence 8 899999999999864
No 358
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.37 E-value=6.7e-12 Score=125.62 Aligned_cols=112 Identities=13% Similarity=0.104 Sum_probs=79.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCc----CC-----CCC-------------cceEecCccCCCceeEEEEeCCCCC
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPEL----VP-----SKA-------------EEITIPPDVTPEMVPTHIVDYSEVD 68 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~~----~~-----~~~-------------~~~~i~~~~~~~~~~~~i~Dt~G~~ 68 (608)
.+|+|+|.+|+|||||+++|+...-... +. ..+ +.......+...++.+++|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 5799999999999999999986432211 10 000 0001112345678899999999999
Q ss_pred CChHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCC
Q psy3301 69 QTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLV 128 (608)
Q Consensus 69 ~~~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 128 (608)
+|.......++.+|++++|+|+++...... . .+..... ..++|+++++||+|+.
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~~~-~-~i~~~~~----~~~~P~iivvNK~D~~ 136 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQT-R-KLFEVCR----LRGIPIITFINKLDRE 136 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccHHH-H-HHHHHHH----hcCCCEEEEEECCccC
Confidence 988888889999999999999987643222 2 3333333 2478999999999964
No 359
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.37 E-value=7.9e-13 Score=122.01 Aligned_cols=130 Identities=15% Similarity=0.071 Sum_probs=86.5
Q ss_pred EEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCC---CceEecceEeCCcceeEeeeeccccc------ccccCCC
Q psy3301 411 VCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECD---PPYTINTTTVYGQEKYLVLKEILVRD------EQLPVLL 481 (608)
Q Consensus 411 k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~---~~~~i~~~~v~Gqe~~~~l~~~~~~~------v~d~~l~ 481 (608)
||+++|.+|||||||+++++++.+. .+.++.+..... ..+.+.-.+++|+++|..+++.++.. +|| ++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D--~~ 77 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV-TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD--SS 77 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE--CC
Confidence 6899999999999999999999854 344455441100 12233444559999988777766655 788 66
Q ss_pred Ccc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCC-------CCceEEc--cCCCHHHHH
Q psy3301 482 PVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKL-------SPAHSFS--AANNDREVF 543 (608)
Q Consensus 482 ~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~-------~~~~~~S--~~~~v~e~F 543 (608)
+.+ .... +.....+.|+++|+||+|+.... ..++..+..+. .+++++| ++.|++++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 152 (158)
T cd00878 78 DRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL-----SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGL 152 (158)
T ss_pred CHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc-----CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHH
Confidence 553 1121 22224689999999999997533 22333333332 1367788 899999999
Q ss_pred HHHHH
Q psy3301 544 VKLAT 548 (608)
Q Consensus 544 ~~l~~ 548 (608)
..|+.
T Consensus 153 ~~l~~ 157 (158)
T cd00878 153 DWLLQ 157 (158)
T ss_pred HHHhh
Confidence 99875
No 360
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.35 E-value=5e-12 Score=121.28 Aligned_cols=137 Identities=15% Similarity=0.129 Sum_probs=83.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHcCCCCCc-CCCCC-cceEecC-ccC-CCceeEEEEeCCCCCCChHHHHHH-----HHh
Q psy3301 10 NVRILLLGDRHVGKTSLILSLVSEEFPEL-VPSKA-EEITIPP-DVT-PEMVPTHIVDYSEVDQTVDELTEE-----IQK 80 (608)
Q Consensus 10 ~~kI~lvG~~~vGKTSLi~~l~~~~~~~~-~~~~~-~~~~i~~-~~~-~~~~~~~i~Dt~G~~~~~~~~~~~-----~~~ 80 (608)
.+||+++|++|||||||+|+|++..+... ..+.. ...+... .+. .....+.+|||+|..........+ +.+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 37899999999999999999999665432 11111 0011110 011 112368999999975432222222 567
Q ss_pred cCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCCcccCcccCcCHHHHHHHHHHHHh
Q psy3301 81 AHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYSTVESSAKTLKNISEMFYYAQKAVL 155 (608)
Q Consensus 81 ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~e~SAk~~~~i~~lf~~l~~~i~ 155 (608)
+|++++|.+ + ++......|++.+... +.|+++|+||+|+..... ..++.++.+.+++...+.+.+.
T Consensus 81 ~d~~l~v~~--~--~~~~~d~~~~~~l~~~----~~~~ilV~nK~D~~~~~~-~~~~~~~~~~~~~l~~i~~~~~ 146 (197)
T cd04104 81 YDFFIIISS--T--RFSSNDVKLAKAIQCM----GKKFYFVRTKVDRDLSNE-QRSKPRSFNREQVLQEIRDNCL 146 (197)
T ss_pred cCEEEEEeC--C--CCCHHHHHHHHHHHHh----CCCEEEEEecccchhhhh-hccccccccHHHHHHHHHHHHH
Confidence 899888843 2 3444444677777742 679999999999854322 2345555555666666555553
No 361
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.35 E-value=9.7e-12 Score=120.66 Aligned_cols=111 Identities=19% Similarity=0.146 Sum_probs=79.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCc--CCCC-----------CcceEe-----cCccC--------CCceeEEEEeCC
Q psy3301 12 RILLLGDRHVGKTSLILSLVSEEFPEL--VPSK-----------AEEITI-----PPDVT--------PEMVPTHIVDYS 65 (608)
Q Consensus 12 kI~lvG~~~vGKTSLi~~l~~~~~~~~--~~~~-----------~~~~~i-----~~~~~--------~~~~~~~i~Dt~ 65 (608)
+|+++|..++|||||+.+|+....... .... ....++ ...+. ..++.+++||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 799999999999999999986542111 0000 000111 11122 237889999999
Q ss_pred CCCCChHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCC
Q psy3301 66 EVDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLV 128 (608)
Q Consensus 66 G~~~~~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 128 (608)
|+++|.......++.+|++++|+|+++..+.+... .|.. .. ..++|+++|+||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~-~l~~-~~----~~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTET-VLRQ-AL----KERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHH-HHHH-HH----HcCCCEEEEEECCCcc
Confidence 99999999999999999999999999887665433 2322 22 2367999999999974
No 362
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.34 E-value=3.2e-12 Score=121.33 Aligned_cols=133 Identities=15% Similarity=0.111 Sum_probs=89.9
Q ss_pred eEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCC---CceEecceEeCCcceeEeeeeccccc------ccccC
Q psy3301 409 VYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECD---PPYTINTTTVYGQEKYLVLKEILVRD------EQLPV 479 (608)
Q Consensus 409 ~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~---~~~~i~~~~v~Gqe~~~~l~~~~~~~------v~d~~ 479 (608)
.+|++++|.+|||||||++++.++.+.. +.+|.+.+... ..+.+...+++|++++..++..++.+ |+|
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD-- 93 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVD-- 93 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEE--
Confidence 3799999999999999999999987753 33344331100 12233445559999988888887777 677
Q ss_pred CCCcc--cccc----c---ccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCC--------------CceEEc--
Q psy3301 480 LLPVD--VDCD----K---YFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLS--------------PAHSFS-- 534 (608)
Q Consensus 480 l~~~~--~~~~----~---~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~--------------~~~~~S-- 534 (608)
.++.+ .... + .....++|+++|+||+|+... ...+++.+.+++. ..+++|
T Consensus 94 ~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~-----~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~ 168 (184)
T smart00178 94 AYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYA-----ASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVV 168 (184)
T ss_pred CCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC-----CCHHHHHHHcCCCcccccccccCCceeEEEEeecc
Confidence 65543 1111 1 112367999999999998642 2334555555432 156777
Q ss_pred cCCCHHHHHHHHHHH
Q psy3301 535 AANNDREVFVKLATM 549 (608)
Q Consensus 535 ~~~~v~e~F~~l~~~ 549 (608)
++.|+++++.+|...
T Consensus 169 ~~~g~~~~~~wl~~~ 183 (184)
T smart00178 169 RRMGYGEGFKWLSQY 183 (184)
T ss_pred cCCChHHHHHHHHhh
Confidence 799999999999764
No 363
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.34 E-value=1.7e-11 Score=132.05 Aligned_cols=142 Identities=18% Similarity=0.163 Sum_probs=105.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCC-CCCcCCCCCcceEecCccCCCceeEEEEeCCCCCC------ChHHHHHHHH--
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEE-FPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQ------TVDELTEEIQ-- 79 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~------~~~~~~~~~~-- 79 (608)
+..+|+++|.||||||||+|+|++.. ...|+|..+ -......+...+..++++|.||.-. .....+.++.
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvT-VEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~ 80 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVT-VEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEG 80 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCee-EEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence 35679999999999999999999976 445677763 2333444555667799999999532 2233455553
Q ss_pred hcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC----------------cccCcccCcCH
Q psy3301 80 KAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST----------------VESSAKTLKNI 143 (608)
Q Consensus 80 ~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------------~e~SAk~~~~i 143 (608)
++|+++-|.|+++.+.--.+. ++++ ..++|++++.|++|...... +++||++|.|+
T Consensus 81 ~~D~ivnVvDAtnLeRnLylt---lQLl-----E~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~ 152 (653)
T COG0370 81 KPDLIVNVVDATNLERNLYLT---LQLL-----ELGIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGL 152 (653)
T ss_pred CCCEEEEEcccchHHHHHHHH---HHHH-----HcCCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecCCCH
Confidence 579999999999877533332 2222 24789999999999876644 89999999999
Q ss_pred HHHHHHHHHHHhCCCC
Q psy3301 144 SEMFYYAQKAVLHPMA 159 (608)
Q Consensus 144 ~~lf~~l~~~i~~~~~ 159 (608)
+++...+.+.......
T Consensus 153 ~~l~~~i~~~~~~~~~ 168 (653)
T COG0370 153 EELKRAIIELAESKTT 168 (653)
T ss_pred HHHHHHHHHhcccccc
Confidence 9999999887765554
No 364
>PRK12736 elongation factor Tu; Reviewed
Probab=99.34 E-value=9e-12 Score=132.11 Aligned_cols=117 Identities=21% Similarity=0.175 Sum_probs=80.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCC----------------cCCCCCcceEecCccCCCceeEEEEeCCCCCCC
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPE----------------LVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQT 70 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~----------------~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~ 70 (608)
.++.++|+++|..++|||||+.+|++..... +.....+.......+...+..+.++||||+++|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 5668999999999999999999998632100 011111222223334455677899999999988
Q ss_pred hHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCc-EEEEEeCcCCCC
Q psy3301 71 VDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLP-IVLVGNKVDLVD 129 (608)
Q Consensus 71 ~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~ 129 (608)
.......+..+|++++|+|+++...-+.. .++..+.. .++| +|+|+||+|+.+
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t~--~~~~~~~~----~g~~~~IvviNK~D~~~ 142 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMPQTR--EHILLARQ----VGVPYLVVFLNKVDLVD 142 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhHH--HHHHHHHH----cCCCEEEEEEEecCCcc
Confidence 87777788899999999999874322221 12223332 3678 678999999863
No 365
>KOG1489|consensus
Probab=99.33 E-value=5.8e-12 Score=122.72 Aligned_cols=140 Identities=16% Similarity=0.165 Sum_probs=103.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCc-CCCCCcceEecCccCCCceeEEEEeCCCCCCChH-------HHHHHHHhcC
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPEL-VPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVD-------ELTEEIQKAH 82 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~ad 82 (608)
-.|-+||-||+|||||+++|...+.... |+.++-...+......+...+.+-|.||.-+-.. .....+.+++
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~ 276 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCK 276 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhhc
Confidence 4578999999999999999999875443 6666555555432333344599999999644322 2456788999
Q ss_pred cEEEEEEcCCh---hhHHHHHHhHHHHHhhh-ccCCCCcEEEEEeCcCCCCCCC---------------cccCcccCcCH
Q psy3301 83 VICLVYSVVDD---ASIDRLSSHWLPFLRNC-LVDTCLPIVLVGNKVDLVDYST---------------VESSAKTLKNI 143 (608)
Q Consensus 83 ~iilV~d~~~~---~s~~~~~~~~~~~i~~~-~~~~~~piilv~nK~Dl~~~~~---------------~e~SAk~~~~i 143 (608)
+.++|.|++.. .-++.+.. +..+++.+ ....+.|.++|+||+|+.+... +++||++++|+
T Consensus 277 ~l~fVvD~s~~~~~~p~~~~~l-L~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~~~V~pvsA~~~egl 355 (366)
T KOG1489|consen 277 GLLFVVDLSGKQLRNPWQQLQL-LIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQNPHVVPVSAKSGEGL 355 (366)
T ss_pred eEEEEEECCCcccCCHHHHHHH-HHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcCCCcEEEeeeccccch
Confidence 99999999988 77888774 44444433 4566789999999999953322 89999999999
Q ss_pred HHHHHHHH
Q psy3301 144 SEMFYYAQ 151 (608)
Q Consensus 144 ~~lf~~l~ 151 (608)
.++...+-
T Consensus 356 ~~ll~~lr 363 (366)
T KOG1489|consen 356 EELLNGLR 363 (366)
T ss_pred HHHHHHHh
Confidence 99887654
No 366
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.33 E-value=2.3e-11 Score=119.79 Aligned_cols=144 Identities=20% Similarity=0.254 Sum_probs=103.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCc-CCCCCcceEecCccCCCceeEEEEeCCCCC-CChHH-------HHHHH
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPEL-VPSKAEEITIPPDVTPEMVPTHIVDYSEVD-QTVDE-------LTEEI 78 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~-~~~~~-------~~~~~ 78 (608)
.+...|+|+|.||||||||++++.+.+.... ||.++....+. .+.....+++++||||.= +-.+. ....+
T Consensus 166 p~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vG-hfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL 244 (346)
T COG1084 166 PDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVG-HFERGYLRIQVIDTPGLLDRPLEERNEIERQAILAL 244 (346)
T ss_pred CCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEe-eeecCCceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence 3567899999999999999999999886655 77665555543 566777899999999942 11111 11222
Q ss_pred H-hcCcEEEEEEcCC--hhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC----------------cccCccc
Q psy3301 79 Q-KAHVICLVYSVVD--DASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST----------------VESSAKT 139 (608)
Q Consensus 79 ~-~ad~iilV~d~~~--~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------------~e~SAk~ 139 (608)
+ -+++|++++|.+. ..+.+.-. .++..++.. -+.|+++|.||+|+..... ..+|+..
T Consensus 245 ~hl~~~IlF~~D~Se~cgy~lE~Q~-~L~~eIk~~---f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 320 (346)
T COG1084 245 RHLAGVILFLFDPSETCGYSLEEQI-SLLEEIKEL---FKAPIVVVINKIDIADEEKLEEIEASVLEEGGEEPLKISATK 320 (346)
T ss_pred HHhcCeEEEEEcCccccCCCHHHHH-HHHHHHHHh---cCCCeEEEEecccccchhHHHHHHHHHHhhccccccceeeee
Confidence 2 3688999999885 46777766 566677642 2389999999999875433 5677777
Q ss_pred CcCHHHHHHHHHHHHhC
Q psy3301 140 LKNISEMFYYAQKAVLH 156 (608)
Q Consensus 140 ~~~i~~lf~~l~~~i~~ 156 (608)
+.+++.+-..+.+.+..
T Consensus 321 ~~~~d~~~~~v~~~a~~ 337 (346)
T COG1084 321 GCGLDKLREEVRKTALE 337 (346)
T ss_pred hhhHHHHHHHHHHHhhc
Confidence 77777777766666543
No 367
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.32 E-value=4.4e-12 Score=116.41 Aligned_cols=131 Identities=20% Similarity=0.167 Sum_probs=88.7
Q ss_pred EEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCC---CceEecceEeCCcceeEeeeeccccc------ccccCCC
Q psy3301 411 VCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECD---PPYTINTTTVYGQEKYLVLKEILVRD------EQLPVLL 481 (608)
Q Consensus 411 k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~---~~~~i~~~~v~Gqe~~~~l~~~~~~~------v~d~~l~ 481 (608)
.++++|++|||||||++++.+..+...+.++.+.+... ..+.+..++++|+++|..++..++.. ++| ++
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d--~~ 78 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD--AA 78 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE--CC
Confidence 37899999999999999999999988887776652211 12344556669998888776666655 667 55
Q ss_pred Ccc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCC-------CCceEEc--cCCCHHHHH
Q psy3301 482 PVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKL-------SPAHSFS--AANNDREVF 543 (608)
Q Consensus 482 ~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~-------~~~~~~S--~~~~v~e~F 543 (608)
+.+ ..+. +.....++|+++|+||+|+.+.... .+..+.+++ .+.+++| ++.|++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (159)
T cd04159 79 DRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSV-----DELIEQMNLKSITDREVSCYSISCKEKTNIDIVL 153 (159)
T ss_pred CHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCH-----HHHHHHhCcccccCCceEEEEEEeccCCChHHHH
Confidence 543 1111 1112367899999999998753321 222222221 1357788 899999999
Q ss_pred HHHHH
Q psy3301 544 VKLAT 548 (608)
Q Consensus 544 ~~l~~ 548 (608)
..|++
T Consensus 154 ~~l~~ 158 (159)
T cd04159 154 DWLIK 158 (159)
T ss_pred HHHhh
Confidence 99875
No 368
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.32 E-value=4e-11 Score=122.36 Aligned_cols=80 Identities=14% Similarity=0.229 Sum_probs=55.1
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCCC-cCCCCCcceEecCc----------------------cCC-CceeEEEEeCCCC-
Q psy3301 13 ILLLGDRHVGKTSLILSLVSEEFPE-LVPSKAEEITIPPD----------------------VTP-EMVPTHIVDYSEV- 67 (608)
Q Consensus 13 I~lvG~~~vGKTSLi~~l~~~~~~~-~~~~~~~~~~i~~~----------------------~~~-~~~~~~i~Dt~G~- 67 (608)
|+++|.||||||||+++|++..+.. ++|.++-..++... .++ ..+++++|||||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 5799999999999999999987542 24443211111100 112 3478999999997
Q ss_pred ---CCChHHHH---HHHHhcCcEEEEEEcCC
Q psy3301 68 ---DQTVDELT---EEIQKAHVICLVYSVVD 92 (608)
Q Consensus 68 ---~~~~~~~~---~~~~~ad~iilV~d~~~ 92 (608)
+++...-. ..+++||++++|+|++.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 44444433 35999999999999973
No 369
>PRK12735 elongation factor Tu; Reviewed
Probab=99.31 E-value=1.2e-11 Score=131.27 Aligned_cols=118 Identities=19% Similarity=0.156 Sum_probs=78.7
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHHcC-------CCCC---------cCCCCCcceEecCccCCCceeEEEEeCCCCCC
Q psy3301 6 SLRRNVRILLLGDRHVGKTSLILSLVSE-------EFPE---------LVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQ 69 (608)
Q Consensus 6 ~~~~~~kI~lvG~~~vGKTSLi~~l~~~-------~~~~---------~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~ 69 (608)
..++.++|+++|..++|||||+++|++. .+.. +.....+.......+...+..+.++||||+++
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence 3466899999999999999999999962 1100 00111111111222444567789999999988
Q ss_pred ChHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEE-EEEeCcCCCC
Q psy3301 70 TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIV-LVGNKVDLVD 129 (608)
Q Consensus 70 ~~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~~ 129 (608)
|.......+..+|++++|+|+.+...-+.. .++..+. ..++|.+ +|+||+|+.+
T Consensus 88 f~~~~~~~~~~aD~~llVvda~~g~~~qt~--e~l~~~~----~~gi~~iivvvNK~Dl~~ 142 (396)
T PRK12735 88 YVKNMITGAAQMDGAILVVSAADGPMPQTR--EHILLAR----QVGVPYIVVFLNKCDMVD 142 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCchhHH--HHHHHHH----HcCCCeEEEEEEecCCcc
Confidence 877777888899999999999875332221 1222333 2357855 6799999863
No 370
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.30 E-value=4.6e-12 Score=123.68 Aligned_cols=142 Identities=16% Similarity=0.144 Sum_probs=99.4
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEe-------cceEeCCcceeEeeeeccccc------cc
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTI-------NTTTVYGQEKYLVLKEILVRD------EQ 476 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i-------~~~~v~Gqe~~~~l~~~~~~~------v~ 476 (608)
+|++|+|++|||||||+++|.++.+...+.+|++.......... ...+++||++|..+++.|+++ +|
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~ 85 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVY 85 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEE
Confidence 89999999999999999999999999988877766222222222 233459999999999999888 67
Q ss_pred ccCCCCcc---cccc------cccCCCCCcEEEEEeCCCCCcch------------hcccccHHHHHHHc--CCCCceEE
Q psy3301 477 LPVLLPVD---VDCD------KYFSTSKIPVMLVAGKSDMPRAR------------QDYLMQPDIFCETH--KLSPAHSF 533 (608)
Q Consensus 477 d~~l~~~~---~~~~------~~~~~~~~p~ilVgnK~DL~~~~------------~~~~~~~~~~~~~~--~~~~~~~~ 533 (608)
| .+... +... ........|+++||||+||...+ +.........+... ..+.++++
T Consensus 86 d--~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (219)
T COG1100 86 D--STLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET 163 (219)
T ss_pred e--cccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence 7 55422 2222 22222579999999999998664 23233333333333 12236777
Q ss_pred c----cCCCHHHHHHHHHHHHcCC
Q psy3301 534 S----AANNDREVFVKLATMAAFP 553 (608)
Q Consensus 534 S----~~~~v~e~F~~l~~~a~~p 553 (608)
| ++.+++++|..+++.+...
T Consensus 164 s~~~~~~~~v~~~~~~~~~~~~~~ 187 (219)
T COG1100 164 SAKSLTGPNVNELFKELLRKLLEE 187 (219)
T ss_pred ecccCCCcCHHHHHHHHHHHHHHh
Confidence 7 5789999999999988654
No 371
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.30 E-value=3.1e-11 Score=118.28 Aligned_cols=143 Identities=20% Similarity=0.196 Sum_probs=108.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCC----h---HHHHHHHHhcC
Q psy3301 10 NVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQT----V---DELTEEIQKAH 82 (608)
Q Consensus 10 ~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~----~---~~~~~~~~~ad 82 (608)
..+++++|.|+||||||+++|++.+....--+.++...+|..+..++..++|+|+||.-.- . ......++.||
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~AD 142 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNAD 142 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCC
Confidence 5689999999999999999999988665534444666778888999999999999974221 1 22456689999
Q ss_pred cEEEEEEcCChhh-HHHHHH------------------------------------------------------------
Q psy3301 83 VICLVYSVVDDAS-IDRLSS------------------------------------------------------------ 101 (608)
Q Consensus 83 ~iilV~d~~~~~s-~~~~~~------------------------------------------------------------ 101 (608)
.|++|.|+....+ .+.+..
T Consensus 143 lIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~ 222 (365)
T COG1163 143 LIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIRE 222 (365)
T ss_pred EEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEec
Confidence 9999999986654 444331
Q ss_pred -----hHHHHHhhhccCCCCcEEEEEeCcCCCCCCC----------cccCcccCcCHHHHHHHHHHHH
Q psy3301 102 -----HWLPFLRNCLVDTCLPIVLVGNKVDLVDYST----------VESSAKTLKNISEMFYYAQKAV 154 (608)
Q Consensus 102 -----~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~e~SAk~~~~i~~lf~~l~~~i 154 (608)
.++..+. .+..-+|.++|.||+|+..... +.+||+.+.|++++.+.+.+.+
T Consensus 223 dvTlDd~id~l~--~nrvY~p~l~v~NKiD~~~~e~~~~l~~~~~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 223 DVTLDDLIDALE--GNRVYKPALYVVNKIDLPGLEELERLARKPNSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred CCcHHHHHHHHh--hcceeeeeEEEEecccccCHHHHHHHHhccceEEEecccCCCHHHHHHHHHHhh
Confidence 1111111 1223479999999999998443 8899999999999999999987
No 372
>PRK13351 elongation factor G; Reviewed
Probab=99.30 E-value=5.4e-11 Score=135.40 Aligned_cols=130 Identities=15% Similarity=0.147 Sum_probs=90.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCc----CCC-C----------CcceEec---CccCCCceeEEEEeCCCCCC
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPEL----VPS-K----------AEEITIP---PDVTPEMVPTHIVDYSEVDQ 69 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~----~~~-~----------~~~~~i~---~~~~~~~~~~~i~Dt~G~~~ 69 (608)
.+..+|+|+|..|+|||||+++|+....... +.. . ....++. ..+...+..+++|||||+.+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 4567999999999999999999986431110 000 0 0011111 12344678899999999999
Q ss_pred ChHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCCcccCcccCcCHHHHHHH
Q psy3301 70 TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYSTVESSAKTLKNISEMFYY 149 (608)
Q Consensus 70 ~~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~e~SAk~~~~i~~lf~~ 149 (608)
+...+...++.+|++++|+|+++..+.+... .|.. +. ..++|+++|+||+|+.. ..+.++...
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~-~~~~-~~----~~~~p~iiviNK~D~~~-----------~~~~~~~~~ 148 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTET-VWRQ-AD----RYGIPRLIFINKMDRVG-----------ADLFKVLED 148 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHH-HH----hcCCCEEEEEECCCCCC-----------CCHHHHHHH
Confidence 9888999999999999999999887766544 4533 33 23789999999999653 345555555
Q ss_pred HHHHH
Q psy3301 150 AQKAV 154 (608)
Q Consensus 150 l~~~i 154 (608)
+...+
T Consensus 149 i~~~l 153 (687)
T PRK13351 149 IEERF 153 (687)
T ss_pred HHHHH
Confidence 55444
No 373
>COG2262 HflX GTPases [General function prediction only]
Probab=99.30 E-value=2.7e-11 Score=122.96 Aligned_cols=145 Identities=19% Similarity=0.165 Sum_probs=103.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCC-CcCCCC-CcceEecCccCCCceeEEEEeCCCCCCC-hHH-------HHHHH
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFP-ELVPSK-AEEITIPPDVTPEMVPTHIVDYSEVDQT-VDE-------LTEEI 78 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~-~~~~~~-~~~~~i~~~~~~~~~~~~i~Dt~G~~~~-~~~-------~~~~~ 78 (608)
....|.++|-.|+|||||+|+|++.... .+.-.. .+..+-...+. .+..+.+-||.|.-+. ... ...+.
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~-~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~ 269 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELG-DGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEV 269 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeC-CCceEEEecCccCcccCChHHHHHHHHHHHHh
Confidence 3457999999999999999999986643 322111 12222222222 2677999999985332 111 24456
Q ss_pred HhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC------------cccCcccCcCHHHH
Q psy3301 79 QKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST------------VESSAKTLKNISEM 146 (608)
Q Consensus 79 ~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~------------~e~SAk~~~~i~~l 146 (608)
..||+++.|.|++++...+.+. .....+.+ .....+|+|+|.||+|+..... +.+||++|.|++.+
T Consensus 270 ~~aDlllhVVDaSdp~~~~~~~-~v~~vL~e-l~~~~~p~i~v~NKiD~~~~~~~~~~~~~~~~~~v~iSA~~~~gl~~L 347 (411)
T COG2262 270 KEADLLLHVVDASDPEILEKLE-AVEDVLAE-IGADEIPIILVLNKIDLLEDEEILAELERGSPNPVFISAKTGEGLDLL 347 (411)
T ss_pred hcCCEEEEEeecCChhHHHHHH-HHHHHHHH-cCCCCCCEEEEEecccccCchhhhhhhhhcCCCeEEEEeccCcCHHHH
Confidence 8899999999999997666665 45555554 3455699999999999764432 88999999999999
Q ss_pred HHHHHHHHhC
Q psy3301 147 FYYAQKAVLH 156 (608)
Q Consensus 147 f~~l~~~i~~ 156 (608)
...+...+..
T Consensus 348 ~~~i~~~l~~ 357 (411)
T COG2262 348 RERIIELLSG 357 (411)
T ss_pred HHHHHHHhhh
Confidence 9999888754
No 374
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.30 E-value=1.6e-11 Score=118.07 Aligned_cols=145 Identities=17% Similarity=0.140 Sum_probs=103.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCCc-CCCCCcceEecCccCCCceeEEEEeCCCCCC-------ChHHHHHHH
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPEL-VPSKAEEITIPPDVTPEMVPTHIVDYSEVDQ-------TVDELTEEI 78 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~ 78 (608)
.++.++|+++|..|+|||||||+|..++..+. .-+...+++.........-.+.|||+||.++ ++.....++
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l 115 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYL 115 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHHh
Confidence 45689999999999999999999997665543 1122222222222334446699999999876 445567788
Q ss_pred HhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC--------------------------
Q psy3301 79 QKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-------------------------- 132 (608)
Q Consensus 79 ~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-------------------------- 132 (608)
.++|.++++.++.|+.---... .|...+. ...+.|+++++|.+|......
T Consensus 116 ~~~DLvL~l~~~~draL~~d~~-f~~dVi~---~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~ 191 (296)
T COG3596 116 PKLDLVLWLIKADDRALGTDED-FLRDVII---LGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGR 191 (296)
T ss_pred hhccEEEEeccCCCccccCCHH-HHHHHHH---hccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999874222222 3434333 344589999999999876631
Q ss_pred --------cccCcccCcCHHHHHHHHHHHHh
Q psy3301 133 --------VESSAKTLKNISEMFYYAQKAVL 155 (608)
Q Consensus 133 --------~e~SAk~~~~i~~lf~~l~~~i~ 155 (608)
+.+|.+.+.|+.++.+.+++++.
T Consensus 192 ~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 192 LFQEVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred HHhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 56677889999999999988874
No 375
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.29 E-value=3.2e-11 Score=105.18 Aligned_cols=105 Identities=23% Similarity=0.339 Sum_probs=69.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCC--cCCCCCcceEecCccCCCceeEEEEeCCCCCCChH---------HHHHHHHh
Q psy3301 12 RILLLGDRHVGKTSLILSLVSEEFPE--LVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVD---------ELTEEIQK 80 (608)
Q Consensus 12 kI~lvG~~~vGKTSLi~~l~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~---------~~~~~~~~ 80 (608)
||+|+|.+|+|||||+++|++..... ..++.+ .......+...+..+.++||||...... .....+..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T-~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~ 79 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTT-RDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISK 79 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSS-SSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCT
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccce-eeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHH
Confidence 69999999999999999999865322 133332 2222223334566778999999754311 23444588
Q ss_pred cCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeC
Q psy3301 81 AHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNK 124 (608)
Q Consensus 81 ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK 124 (608)
+|++++|+|++++.. +... .++..++ .+.|+++|.||
T Consensus 80 ~d~ii~vv~~~~~~~-~~~~-~~~~~l~-----~~~~~i~v~NK 116 (116)
T PF01926_consen 80 SDLIIYVVDASNPIT-EDDK-NILRELK-----NKKPIILVLNK 116 (116)
T ss_dssp ESEEEEEEETTSHSH-HHHH-HHHHHHH-----TTSEEEEEEES
T ss_pred CCEEEEEEECCCCCC-HHHH-HHHHHHh-----cCCCEEEEEcC
Confidence 999999999877422 1111 2333332 47899999998
No 376
>KOG0077|consensus
Probab=99.28 E-value=6.4e-12 Score=110.73 Aligned_cols=121 Identities=17% Similarity=0.249 Sum_probs=96.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLV 87 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV 87 (608)
++.-|++++|-.|+|||||++.|-.++....+|+-. .....+...++++..+|..|+.+-+..+..++..+|++++.
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlH---PTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l 94 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLH---PTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYL 94 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccccccCCCcC---CChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence 456799999999999999999998887666444321 11223455678999999999999988999999999999999
Q ss_pred EEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC
Q psy3301 88 YSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST 132 (608)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~ 132 (608)
+|+-|.+.|...+..+-..+.. ....++|+++.+||+|.+....
T Consensus 95 vda~d~er~~es~~eld~ll~~-e~la~vp~lilgnKId~p~a~s 138 (193)
T KOG0077|consen 95 VDAYDQERFAESKKELDALLSD-ESLATVPFLILGNKIDIPYAAS 138 (193)
T ss_pred eehhhHHHhHHHHHHHHHHHhH-HHHhcCcceeecccccCCCccc
Confidence 9999999999888555554443 3456899999999999886543
No 377
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.28 E-value=2.8e-11 Score=128.52 Aligned_cols=117 Identities=21% Similarity=0.192 Sum_probs=78.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCC-------C---------CCcCCCCCcceEecCccCCCceeEEEEeCCCCCCC
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEE-------F---------PELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQT 70 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~-------~---------~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~ 70 (608)
.++.++|+++|..++|||||+++|++.. + ..+.....+.......+...+..+.||||||+++|
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 4668999999999999999999998431 0 00011111222223334456678999999999999
Q ss_pred hHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEE-EEEeCcCCCC
Q psy3301 71 VDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIV-LVGNKVDLVD 129 (608)
Q Consensus 71 ~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~~ 129 (608)
.......+..+|++++|+|+++....+... .+..+.. .++|.+ +|+||+|+.+
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt~e--~l~~~~~----~gi~~iIvvvNK~Dl~~ 142 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDGPMPQTRE--HILLARQ----VGVPYIVVFLNKCDMVD 142 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHHHH--HHHHHHH----cCCCEEEEEEEecccCC
Confidence 877777788899999999998743222211 2222331 256755 6899999864
No 378
>PRK00007 elongation factor G; Reviewed
Probab=99.28 E-value=4.6e-11 Score=135.48 Aligned_cols=119 Identities=14% Similarity=0.080 Sum_probs=83.0
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHHcCCCCCc----CC--------------CCCcceEecCccCCCceeEEEEeCCCC
Q psy3301 6 SLRRNVRILLLGDRHVGKTSLILSLVSEEFPEL----VP--------------SKAEEITIPPDVTPEMVPTHIVDYSEV 67 (608)
Q Consensus 6 ~~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~----~~--------------~~~~~~~i~~~~~~~~~~~~i~Dt~G~ 67 (608)
...+..+|+|+|.+++|||||+++|+...-... +. ...+.......+...+..++++||||+
T Consensus 6 ~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~ 85 (693)
T PRK00007 6 PLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGH 85 (693)
T ss_pred cccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCc
Confidence 345567999999999999999999984221100 11 111111212234455788999999999
Q ss_pred CCChHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCC
Q psy3301 68 DQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDY 130 (608)
Q Consensus 68 ~~~~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 130 (608)
..|.......++.+|++++|+|+...-.-+... .|.. +. ..++|+|+++||+|+...
T Consensus 86 ~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~-~~~~-~~----~~~~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 86 VDFTIEVERSLRVLDGAVAVFDAVGGVEPQSET-VWRQ-AD----KYKVPRIAFVNKMDRTGA 142 (693)
T ss_pred HHHHHHHHHHHHHcCEEEEEEECCCCcchhhHH-HHHH-HH----HcCCCEEEEEECCCCCCC
Confidence 888778888999999999999988765444433 3333 33 246899999999998754
No 379
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.27 E-value=6.7e-12 Score=118.33 Aligned_cols=138 Identities=12% Similarity=0.033 Sum_probs=91.0
Q ss_pred EEEEEccCCCchHHHHHHHhcCC-------CCCCCCCCC------CCCc--------C----CCceEecceEeCCcceeE
Q psy3301 411 VCHVIGNRSTGKTALCQSILRKH-------HDSSKTSIT------SPVE--------C----DPPYTINTTTVYGQEKYL 465 (608)
Q Consensus 411 k~~viG~~gvGKTsll~~f~~~~-------~~~~~~~t~------~~~~--------~----~~~~~i~~~~v~Gqe~~~ 465 (608)
+++++|++|||||||+++|++.. +...+.++. +.+. + ...+.++-++.+|+++|.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 58999999999999999999742 222222211 1100 0 123344556669999988
Q ss_pred eeeeccccc------ccccCCCCcc--cccc--cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCC--CceEE
Q psy3301 466 VLKEILVRD------EQLPVLLPVD--VDCD--KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLS--PAHSF 533 (608)
Q Consensus 466 ~l~~~~~~~------v~d~~l~~~~--~~~~--~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~--~~~~~ 533 (608)
.+...+++. ||| .++.. .... ......++|+++|+||+|+.+.+ ......++++.++++ .++++
T Consensus 82 ~~~~~~~~~ad~~i~v~D--~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~ 157 (179)
T cd01890 82 YEVSRSLAACEGALLLVD--ATQGVEAQTLANFYLALENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAILV 157 (179)
T ss_pred HHHHHHHHhcCeEEEEEE--CCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEEEe
Confidence 777766665 677 55432 1111 11223578999999999996432 123346778888774 36788
Q ss_pred c--cCCCHHHHHHHHHHHHcC
Q psy3301 534 S--AANNDREVFVKLATMAAF 552 (608)
Q Consensus 534 S--~~~~v~e~F~~l~~~a~~ 552 (608)
| ++.|++++|..|++.+..
T Consensus 158 Sa~~g~gi~~l~~~l~~~~~~ 178 (179)
T cd01890 158 SAKTGLGVEDLLEAIVERIPP 178 (179)
T ss_pred eccCCCCHHHHHHHHHhhCCC
Confidence 8 899999999999987633
No 380
>CHL00071 tufA elongation factor Tu
Probab=99.27 E-value=3.5e-11 Score=128.30 Aligned_cols=118 Identities=20% Similarity=0.145 Sum_probs=80.9
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHHcCCCCCc----------------CCCCCcceEecCccCCCceeEEEEeCCCCCC
Q psy3301 6 SLRRNVRILLLGDRHVGKTSLILSLVSEEFPEL----------------VPSKAEEITIPPDVTPEMVPTHIVDYSEVDQ 69 (608)
Q Consensus 6 ~~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~----------------~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~ 69 (608)
..++.++|+++|.+++|||||+++|++...... .....+.......+..++..+.++||||+.+
T Consensus 8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~ 87 (409)
T CHL00071 8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD 87 (409)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHH
Confidence 356789999999999999999999997521110 0011111111122344567789999999998
Q ss_pred ChHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCc-EEEEEeCcCCCC
Q psy3301 70 TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLP-IVLVGNKVDLVD 129 (608)
Q Consensus 70 ~~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~ 129 (608)
|...+...+..+|++++|+|+.....-+.. ..+..+. ..++| +|+|.||+|+.+
T Consensus 88 ~~~~~~~~~~~~D~~ilVvda~~g~~~qt~--~~~~~~~----~~g~~~iIvvvNK~D~~~ 142 (409)
T CHL00071 88 YVKNMITGAAQMDGAILVVSAADGPMPQTK--EHILLAK----QVGVPNIVVFLNKEDQVD 142 (409)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCcHHHH--HHHHHHH----HcCCCEEEEEEEccCCCC
Confidence 888888889999999999999875332222 2223333 23578 778999999864
No 381
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.27 E-value=1.2e-11 Score=116.03 Aligned_cols=132 Identities=14% Similarity=0.099 Sum_probs=86.3
Q ss_pred eEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCC---CceEecceEeCCcceeEeeeeccccc------ccccC
Q psy3301 409 VYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECD---PPYTINTTTVYGQEKYLVLKEILVRD------EQLPV 479 (608)
Q Consensus 409 ~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~---~~~~i~~~~v~Gqe~~~~l~~~~~~~------v~d~~ 479 (608)
.++|+|+|++|||||||++++.+..+.. +.++.+.+... ....+.-++.+|++++..++..+++. ++|
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D-- 90 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVID-- 90 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEe--
Confidence 5899999999999999999999987653 33454431000 11223334457887766555554443 566
Q ss_pred CCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCC-------CceEEc--cCCCHHH
Q psy3301 480 LLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLS-------PAHSFS--AANNDRE 541 (608)
Q Consensus 480 l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~-------~~~~~S--~~~~v~e 541 (608)
.++.. .... +.....++|+++|+||+|+.+. .+.+++++.+++. +++++| ++.|+++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-----~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~ 165 (173)
T cd04155 91 SADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATA-----APAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQE 165 (173)
T ss_pred CCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccC-----CCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHH
Confidence 54432 1111 1222357999999999998642 2355666776654 246788 8999999
Q ss_pred HHHHHHH
Q psy3301 542 VFVKLAT 548 (608)
Q Consensus 542 ~F~~l~~ 548 (608)
+|.+|++
T Consensus 166 ~~~~l~~ 172 (173)
T cd04155 166 GMNWVCK 172 (173)
T ss_pred HHHHHhc
Confidence 9999975
No 382
>PRK04213 GTP-binding protein; Provisional
Probab=99.27 E-value=5.5e-12 Score=121.49 Aligned_cols=134 Identities=17% Similarity=0.127 Sum_probs=87.3
Q ss_pred eEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEec---ceEeCC-----------cceeEeeeecccc-
Q psy3301 409 VYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTIN---TTTVYG-----------QEKYLVLKEILVR- 473 (608)
Q Consensus 409 ~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~---~~~v~G-----------qe~~~~l~~~~~~- 473 (608)
.++|+++|.+|||||||++++.+..+...+.+..+. ....+.++ -++++| +++|..++..+++
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~--~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTR--KPNHYDWGDFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIED 86 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceee--CceEEeecceEEEeCCccccccccCHHHHHHHHHHHHHHHHh
Confidence 479999999999999999999998876544332222 12222222 234478 6777665544443
Q ss_pred c------ccccCCCCcc--ccc----------------ccccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCC-
Q psy3301 474 D------EQLPVLLPVD--VDC----------------DKYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLS- 528 (608)
Q Consensus 474 ~------v~d~~l~~~~--~~~----------------~~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~- 528 (608)
. ++. +.+.. ..+ .+.....++|+++|+||+|+.+.+ .+...++++.+++.
T Consensus 87 ~~~~~~~vi~--v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~---~~~~~~~~~~~~~~~ 161 (201)
T PRK04213 87 NADRILAAVL--VVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR---DEVLDEIAERLGLYP 161 (201)
T ss_pred hhhhheEEEE--EEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcH---HHHHHHHHHHhcCCc
Confidence 1 222 22211 000 122234689999999999996543 24567788888862
Q ss_pred -------CceEEc--cCCCHHHHHHHHHHHH
Q psy3301 529 -------PAHSFS--AANNDREVFVKLATMA 550 (608)
Q Consensus 529 -------~~~~~S--~~~~v~e~F~~l~~~a 550 (608)
+++++| ++ |++++|..|++.+
T Consensus 162 ~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~ 191 (201)
T PRK04213 162 PWRQWQDIIAPISAKKG-GIEELKEAIRKRL 191 (201)
T ss_pred cccccCCcEEEEecccC-CHHHHHHHHHHhh
Confidence 358888 89 9999999999875
No 383
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.26 E-value=6.9e-12 Score=116.79 Aligned_cols=134 Identities=15% Similarity=0.096 Sum_probs=82.6
Q ss_pred EEEEEccCCCchHHHHHHHhcCCC------CCCCCCCCCCCcCC---CceEecceEeCCcceeEeeeeccccc------c
Q psy3301 411 VCHVIGNRSTGKTALCQSILRKHH------DSSKTSITSPVECD---PPYTINTTTVYGQEKYLVLKEILVRD------E 475 (608)
Q Consensus 411 k~~viG~~gvGKTsll~~f~~~~~------~~~~~~t~~~~~~~---~~~~i~~~~v~Gqe~~~~l~~~~~~~------v 475 (608)
+|+|+|++|||||||++++++... ...+.+|.+.+... ..+.+.-.+++|++.|..++..+++. +
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v 80 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV 80 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 589999999999999999986432 22233344331100 11223334558999888776666655 6
Q ss_pred cccCCCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHc----C--CCCceEEc--cCCC
Q psy3301 476 QLPVLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETH----K--LSPAHSFS--AANN 538 (608)
Q Consensus 476 ~d~~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~----~--~~~~~~~S--~~~~ 538 (608)
+| .++.+ ..+. +.....++|+++|+||+|+.... ...+..++.+.. + -.+++++| ++.|
T Consensus 81 vd--~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 156 (167)
T cd04160 81 ID--STDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDAL--SVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTG 156 (167)
T ss_pred EE--CchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCC--CHHHHHHHhccccccccCCceEEEEeeCCCCcC
Confidence 66 44432 1111 11224679999999999986532 222333333321 1 11478888 8999
Q ss_pred HHHHHHHHHH
Q psy3301 539 DREVFVKLAT 548 (608)
Q Consensus 539 v~e~F~~l~~ 548 (608)
++++|.+|++
T Consensus 157 v~e~~~~l~~ 166 (167)
T cd04160 157 VREGIEWLVE 166 (167)
T ss_pred HHHHHHHHhc
Confidence 9999999975
No 384
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.23 E-value=6.4e-11 Score=109.66 Aligned_cols=139 Identities=19% Similarity=0.165 Sum_probs=86.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCC----------CCChHHHHHHH
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEV----------DQTVDELTEEI 78 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~----------~~~~~~~~~~~ 78 (608)
...-|+++|.+|||||||||+|++.+--..+..+..+.....-+... -.+.++|.||- +.....+..|+
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~-~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL 101 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVD-DELRLVDLPGYGYAKVPKEVKEKWKKLIEEYL 101 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEec-CcEEEEeCCCcccccCCHHHHHHHHHHHHHHH
Confidence 35689999999999999999999976321122221221111112221 12889999993 23333345565
Q ss_pred Hh---cCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC----------------------c
Q psy3301 79 QK---AHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST----------------------V 133 (608)
Q Consensus 79 ~~---ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------------------~ 133 (608)
+. -.++++++|+..+-.-... ..++.+. ..++|+++|.||+|...... +
T Consensus 102 ~~R~~L~~vvlliD~r~~~~~~D~--em~~~l~----~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~ 175 (200)
T COG0218 102 EKRANLKGVVLLIDARHPPKDLDR--EMIEFLL----ELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVV 175 (200)
T ss_pred hhchhheEEEEEEECCCCCcHHHH--HHHHHHH----HcCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceEE
Confidence 43 4677888887765432222 3444444 34899999999999876432 4
Q ss_pred ccCcccCcCHHHHHHHHHHHH
Q psy3301 134 ESSAKTLKNISEMFYYAQKAV 154 (608)
Q Consensus 134 e~SAk~~~~i~~lf~~l~~~i 154 (608)
..|+.++.|++++...+...+
T Consensus 176 ~~ss~~k~Gi~~l~~~i~~~~ 196 (200)
T COG0218 176 LFSSLKKKGIDELKAKILEWL 196 (200)
T ss_pred EEecccccCHHHHHHHHHHHh
Confidence 456677777777766665544
No 385
>KOG0090|consensus
Probab=99.23 E-value=4e-11 Score=110.59 Aligned_cols=119 Identities=20% Similarity=0.219 Sum_probs=86.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHH---hcCcEEE
Q psy3301 10 NVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQ---KAHVICL 86 (608)
Q Consensus 10 ~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~---~ad~iil 86 (608)
.-.|+++|..++|||+|..+|..+.+...++...+.. . .+....-..+++|.||+++.+..+..+++ .+-+|++
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~-a--~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVF 114 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNE-A--TYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVF 114 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCccCeeeeeccce-e--eEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEE
Confidence 3579999999999999999999997665544332111 1 11112223799999999999988888887 7999999
Q ss_pred EEEcC-ChhhHHHHHHhHHHHHhhh-ccCCCCcEEEEEeCcCCCCCC
Q psy3301 87 VYSVV-DDASIDRLSSHWLPFLRNC-LVDTCLPIVLVGNKVDLVDYS 131 (608)
Q Consensus 87 V~d~~-~~~s~~~~~~~~~~~i~~~-~~~~~~piilv~nK~Dl~~~~ 131 (608)
|+|.. .......+.++++..+... .....+|++|+.||.|+....
T Consensus 115 VVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAk 161 (238)
T KOG0090|consen 115 VVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAK 161 (238)
T ss_pred EEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcC
Confidence 99965 3455566666777766643 135677999999999986544
No 386
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.23 E-value=3.7e-11 Score=127.89 Aligned_cols=130 Identities=19% Similarity=0.161 Sum_probs=86.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCcC------------CCC---------------------CcceEecCccCCCce
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPELV------------PSK---------------------AEEITIPPDVTPEMV 57 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~~~------------~~~---------------------~~~~~i~~~~~~~~~ 57 (608)
+||+++|..++|||||+.+|+...-.... ... .+.......+...+.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 58999999999999999999754322110 000 011111222345667
Q ss_pred eEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----
Q psy3301 58 PTHIVDYSEVDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST----- 132 (608)
Q Consensus 58 ~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----- 132 (608)
.+.|+||||+++|...+...+..+|++++|+|+.....-+... .|. .+.. .. ..++++|+||+|+.....
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~-~~~-~~~~--~~-~~~iivviNK~D~~~~~~~~~~~ 155 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRR-HSY-IASL--LG-IRHVVLAVNKMDLVDYDEEVFEN 155 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHH-HHH-HHHH--cC-CCcEEEEEEecccccchHHHHHH
Confidence 8999999999999877888899999999999998653222111 222 2221 11 236899999999864221
Q ss_pred -------------------cccCcccCcCHHH
Q psy3301 133 -------------------VESSAKTLKNISE 145 (608)
Q Consensus 133 -------------------~e~SAk~~~~i~~ 145 (608)
+++||++|.|+.+
T Consensus 156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 156 IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 6788888888775
No 387
>PLN03126 Elongation factor Tu; Provisional
Probab=99.23 E-value=2.5e-11 Score=130.57 Aligned_cols=118 Identities=20% Similarity=0.143 Sum_probs=81.4
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHHcCCCC------C----------cCCCCCcceEecCccCCCceeEEEEeCCCCCC
Q psy3301 6 SLRRNVRILLLGDRHVGKTSLILSLVSEEFP------E----------LVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQ 69 (608)
Q Consensus 6 ~~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~------~----------~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~ 69 (608)
..++.++|+++|..++|||||+++|+..... . +.....+.......+..++..+.++|+||+++
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~ 156 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD 156 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence 3566899999999999999999999963211 0 00000111111222345667899999999999
Q ss_pred ChHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCc-EEEEEeCcCCCC
Q psy3301 70 TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLP-IVLVGNKVDLVD 129 (608)
Q Consensus 70 ~~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~ 129 (608)
|.......+..+|++++|+|+.+...-+.. .++..+. ..++| +|+++||+|+.+
T Consensus 157 f~~~~~~g~~~aD~ailVVda~~G~~~qt~--e~~~~~~----~~gi~~iIvvvNK~Dl~~ 211 (478)
T PLN03126 157 YVKNMITGAAQMDGAILVVSGADGPMPQTK--EHILLAK----QVGVPNMVVFLNKQDQVD 211 (478)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHHHH--HHHHHHH----HcCCCeEEEEEecccccC
Confidence 988888889999999999999876433322 2333333 23678 788999999753
No 388
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=2.8e-11 Score=126.80 Aligned_cols=135 Identities=19% Similarity=0.225 Sum_probs=104.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcc----eEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEE
Q psy3301 10 NVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEE----ITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVIC 85 (608)
Q Consensus 10 ~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 85 (608)
.-=|+++|+-..|||||+..+-+......-....+. +.++.+.. ..-.+.++|||||+-|..+...-..-+|+++
T Consensus 5 ~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~-~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 5 PPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVI-KIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccC-CCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 345899999999999999999888766543333322 23222211 3356899999999999998888888999999
Q ss_pred EEEEcCCh---hhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------------cccCccc
Q psy3301 86 LVYSVVDD---ASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------------VESSAKT 139 (608)
Q Consensus 86 lV~d~~~~---~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------------~e~SAk~ 139 (608)
+|.+++|. ++.+.+. . ....++|++++.||+|..+... +++||++
T Consensus 84 LVVa~dDGv~pQTiEAI~-----h----ak~a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~t 154 (509)
T COG0532 84 LVVAADDGVMPQTIEAIN-----H----AKAAGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKT 154 (509)
T ss_pred EEEEccCCcchhHHHHHH-----H----HHHCCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccC
Confidence 99999985 6666554 2 2345899999999999986644 8999999
Q ss_pred CcCHHHHHHHHHHHH
Q psy3301 140 LKNISEMFYYAQKAV 154 (608)
Q Consensus 140 ~~~i~~lf~~l~~~i 154 (608)
|+|+++|+..+.-..
T Consensus 155 g~Gi~eLL~~ill~a 169 (509)
T COG0532 155 GEGIDELLELILLLA 169 (509)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999998875544
No 389
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.22 E-value=4.7e-11 Score=129.08 Aligned_cols=118 Identities=20% Similarity=0.180 Sum_probs=78.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcC------------CCCC------------------cceEe---cCccC
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPELV------------PSKA------------------EEITI---PPDVT 53 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~------------~~~~------------------~~~~i---~~~~~ 53 (608)
.+..++|+++|..++|||||+.+|+...-.... ..+. ...++ ...+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 567899999999999999999999865432110 0000 00111 11234
Q ss_pred CCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCC
Q psy3301 54 PEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVD 129 (608)
Q Consensus 54 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 129 (608)
..+..+.|+||||++.|...+...+..+|++++|+|++....-+... .|. .+.. .. ..|+|+|+||+|+..
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~-~~~-l~~~--lg-~~~iIvvvNKiD~~~ 174 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRR-HSF-IATL--LG-IKHLVVAVNKMDLVD 174 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchH-HHH-HHHH--hC-CCceEEEEEeecccc
Confidence 55678999999999988777777789999999999998653211111 111 1221 11 247899999999863
No 390
>KOG1673|consensus
Probab=99.22 E-value=7.9e-12 Score=108.58 Aligned_cols=142 Identities=18% Similarity=0.200 Sum_probs=112.0
Q ss_pred ceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecceEe-------CCcceeEeeeeccccc------
Q psy3301 408 NVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINTTTV-------YGQEKYLVLKEILVRD------ 474 (608)
Q Consensus 408 ~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~~~v-------~Gqe~~~~l~~~~~~~------ 474 (608)
-.+|+-++|++.+|||||+-.|+++++.+.+..+.|++.....+.+.+.++ .||+++..+.++...+
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlF 98 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILF 98 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEE
Confidence 348999999999999999999999999988888888866667888877766 8999999988887777
Q ss_pred ccccCCCCcc--ccccccc------CCCCCcEEEEEeCCCCC-----cchhcccccHHHHHHHcCCCCceEEc--cCCCH
Q psy3301 475 EQLPVLLPVD--VDCDKYF------STSKIPVMLVAGKSDMP-----RARQDYLMQPDIFCETHKLSPAHSFS--AANND 539 (608)
Q Consensus 475 v~d~~l~~~~--~~~~~~~------~~~~~p~ilVgnK~DL~-----~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v 539 (608)
+|| |+.+. ..+..|+ ...-+|+ +||+|-|+- +-+..-..|++.+|+.++++ .+.+| .+.||
T Consensus 99 mFD--Lt~r~TLnSi~~WY~QAr~~NktAiPi-lvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAs-L~F~Sts~sINv 174 (205)
T KOG1673|consen 99 MFD--LTRRSTLNSIKEWYRQARGLNKTAIPI-LVGTKYDLFIDLPPELQETISRQARKYAKVMNAS-LFFCSTSHSINV 174 (205)
T ss_pred EEe--cCchHHHHHHHHHHHHHhccCCccceE-EeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCc-EEEeeccccccH
Confidence 789 88877 4444332 3466776 789998863 22223357899999999986 55555 58899
Q ss_pred HHHHHHHHHHHcCC
Q psy3301 540 REVFVKLATMAAFP 553 (608)
Q Consensus 540 ~e~F~~l~~~a~~p 553 (608)
+.+|.-+....+.-
T Consensus 175 ~KIFK~vlAklFnL 188 (205)
T KOG1673|consen 175 QKIFKIVLAKLFNL 188 (205)
T ss_pred HHHHHHHHHHHhCC
Confidence 99999888777654
No 391
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.22 E-value=3e-11 Score=110.48 Aligned_cols=133 Identities=17% Similarity=0.199 Sum_probs=84.5
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEec-------ceEeCCcceeEeeeeccccc------cc
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTIN-------TTTVYGQEKYLVLKEILVRD------EQ 476 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~-------~~~v~Gqe~~~~l~~~~~~~------v~ 476 (608)
+||+++|.+|||||||+++++++.+...+.++.+.+.....+..+ -++.+|++.+..++....+. ++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~ 81 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVF 81 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEE
Confidence 799999999999999999999998776665555552222223333 34458888876555444443 34
Q ss_pred ccCCCCc----cccc-c-----cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHH
Q psy3301 477 LPVLLPV----DVDC-D-----KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFV 544 (608)
Q Consensus 477 d~~l~~~----~~~~-~-----~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~ 544 (608)
| +... .... . ......++|+++|+||+|+.... . ..+........+..+++++| .+.|+.++|.
T Consensus 82 d--~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~-~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~ 157 (161)
T TIGR00231 82 D--IVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-L-KTHVAFLFAKLNGEPIIPLSAETGKNIDSAFK 157 (161)
T ss_pred E--EeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-h-hHHHHHHHhhccCCceEEeecCCCCCHHHHHH
Confidence 4 2221 1111 0 11112289999999999997543 2 22333334445445589999 8999999998
Q ss_pred HH
Q psy3301 545 KL 546 (608)
Q Consensus 545 ~l 546 (608)
.|
T Consensus 158 ~l 159 (161)
T TIGR00231 158 IV 159 (161)
T ss_pred Hh
Confidence 76
No 392
>PLN03127 Elongation factor Tu; Provisional
Probab=99.22 E-value=1.1e-10 Score=124.95 Aligned_cols=117 Identities=21% Similarity=0.177 Sum_probs=80.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcC------CCC----------CcCCCCCcceEecCccCCCceeEEEEeCCCCCCC
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSE------EFP----------ELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQT 70 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~------~~~----------~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~ 70 (608)
.++.++|+++|..++|||||+++|.+. ... ++.....+.......+..++..+.++||||+.+|
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 456899999999999999999999732 110 0011112222223345556678999999999999
Q ss_pred hHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCc-EEEEEeCcCCCC
Q psy3301 71 VDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLP-IVLVGNKVDLVD 129 (608)
Q Consensus 71 ~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~ 129 (608)
.......+..+|++++|+|+++...-+. . ..+..+. ..++| +|++.||+|+.+
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~~~qt-~-e~l~~~~----~~gip~iIvviNKiDlv~ 191 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGPMPQT-K-EHILLAR----QVGVPSLVVFLNKVDVVD 191 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhH-H-HHHHHHH----HcCCCeEEEEEEeeccCC
Confidence 8878778889999999999986533222 1 2222333 23678 578899999853
No 393
>PRK00049 elongation factor Tu; Reviewed
Probab=99.21 E-value=8.1e-11 Score=124.86 Aligned_cols=117 Identities=20% Similarity=0.165 Sum_probs=79.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCC----------------CcCCCCCcceEecCccCCCceeEEEEeCCCCCCC
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFP----------------ELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQT 70 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~----------------~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~ 70 (608)
.+..++|+++|..++|||||+++|++.... .+.....+.......+...+..+.++||||+.+|
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f 88 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY 88 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence 466899999999999999999999973110 0011111222222234445678999999999888
Q ss_pred hHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEE-EEEeCcCCCC
Q psy3301 71 VDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIV-LVGNKVDLVD 129 (608)
Q Consensus 71 ~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~~ 129 (608)
.......+..+|++++|+|+.+...-+.. .++..+.. .++|++ ++.||+|+.+
T Consensus 89 ~~~~~~~~~~aD~~llVVDa~~g~~~qt~--~~~~~~~~----~g~p~iiVvvNK~D~~~ 142 (396)
T PRK00049 89 VKNMITGAAQMDGAILVVSAADGPMPQTR--EHILLARQ----VGVPYIVVFLNKCDMVD 142 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCchHHH--HHHHHHHH----cCCCEEEEEEeecCCcc
Confidence 77777888999999999999875432222 23333332 357876 6899999853
No 394
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.21 E-value=4.6e-11 Score=111.33 Aligned_cols=135 Identities=14% Similarity=0.048 Sum_probs=80.9
Q ss_pred EEEEEccCCCchHHHHHHHhcCCCCCCCCC--CCCCC--cCC-CceEecceEeCCccee----------Eeeeec-cccc
Q psy3301 411 VCHVIGNRSTGKTALCQSILRKHHDSSKTS--ITSPV--ECD-PPYTINTTTVYGQEKY----------LVLKEI-LVRD 474 (608)
Q Consensus 411 k~~viG~~gvGKTsll~~f~~~~~~~~~~~--t~~~~--~~~-~~~~i~~~~v~Gqe~~----------~~l~~~-~~~~ 474 (608)
+++++|.+|||||||+++|+++.+.....+ |.... .+. ..+.+.-++++|+... ..+... +..+
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d 81 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRA 81 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccC
Confidence 689999999999999999999887532211 11110 000 1133444556887321 111111 1112
Q ss_pred ----ccccCCCCccc-ccc------cccC--CCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCH
Q psy3301 475 ----EQLPVLLPVDV-DCD------KYFS--TSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANND 539 (608)
Q Consensus 475 ----v~d~~l~~~~~-~~~------~~~~--~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v 539 (608)
++| .++... ..+ +... ..++|+++|+||+|+...+.+.. ..++++..+.+ ++++| ++.|+
T Consensus 82 ~~l~v~d--~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~~~-~~~~Sa~~~~gi 156 (168)
T cd01897 82 AVLFLFD--PSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSE--IEEEEELEGEE-VLKISTLTEEGV 156 (168)
T ss_pred cEEEEEe--CCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHH--HHHhhhhccCc-eEEEEecccCCH
Confidence 566 443321 100 1111 24799999999999976554322 45666555444 88999 89999
Q ss_pred HHHHHHHHHHH
Q psy3301 540 REVFVKLATMA 550 (608)
Q Consensus 540 ~e~F~~l~~~a 550 (608)
+++|..+++..
T Consensus 157 ~~l~~~l~~~~ 167 (168)
T cd01897 157 DEVKNKACELL 167 (168)
T ss_pred HHHHHHHHHHh
Confidence 99999998865
No 395
>KOG0034|consensus
Probab=99.21 E-value=6.1e-11 Score=110.42 Aligned_cols=141 Identities=18% Similarity=0.229 Sum_probs=109.8
Q ss_pred ccChHHHHHHHHHHHHhccCC-CCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCC-cchhhHHHHH
Q psy3301 167 QELTPECIKALTRIFKVCDLD-NDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNC-ITLNGFLFLH 244 (608)
Q Consensus 167 ~~l~~~~~~~L~~~f~~~D~d-~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~-i~~~~F~~l~ 244 (608)
...+...+.+|...|..+|.+ ++|.++.+|+..+... ..+ .-.++|++.++.. +++. |+|++|+.+.
T Consensus 25 ~~fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~~--~~N---p~~~rI~~~f~~~------~~~~~v~F~~Fv~~l 93 (187)
T KOG0034|consen 25 TQFSANEIERLYERFKKLDRNNGDGYLTKEEFLSIPEL--ALN---PLADRIIDRFDTD------GNGDPVDFEEFVRLL 93 (187)
T ss_pred cccCHHHHHHHHHHHHHhccccccCccCHHHHHHHHHH--hcC---cHHHHHHHHHhcc------CCCCccCHHHHHHHH
Confidence 346678899999999999999 9999999999998742 222 2345677777776 5666 9999999888
Q ss_pred HHHHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhcc
Q psy3301 245 NLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSL 324 (608)
Q Consensus 245 ~~~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~ 324 (608)
..|..+... .++++-+|+.||.|++|+|+.+|+..++..
T Consensus 94 s~f~~~~~~-----------------------------------------~~Kl~faF~vYD~~~~G~I~reel~~iv~~ 132 (187)
T KOG0034|consen 94 SVFSPKASK-----------------------------------------REKLRFAFRVYDLDGDGFISREELKQILRM 132 (187)
T ss_pred hhhcCCccH-----------------------------------------HHHHHHHHHHhcCCCCCcCcHHHHHHHHHH
Confidence 766443221 267888999999999999999999999988
Q ss_pred CCCCCCCCC---------ccccccceecCCCCccchhhHHhHhhhh
Q psy3301 325 CPPECPPWT---------DREMRAMVATNSKGWITMQGFLCYWILT 361 (608)
Q Consensus 325 ~~~~~~~~~---------~~~~~~~~d~~~~g~i~~~ef~~~w~~~ 361 (608)
+- +..++ ++..+.++|.++||.|+|+||.....-+
T Consensus 133 ~~--~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 133 MV--GENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HH--ccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 74 22221 3556678899999999999998875433
No 396
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.20 E-value=1.5e-10 Score=126.28 Aligned_cols=134 Identities=12% Similarity=0.074 Sum_probs=91.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCc----CCC------C-C--------cceEe---cCccCCCceeEEEEeCC
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPEL----VPS------K-A--------EEITI---PPDVTPEMVPTHIVDYS 65 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~----~~~------~-~--------~~~~i---~~~~~~~~~~~~i~Dt~ 65 (608)
.+..+|+|+|.+++|||||+++|+...-... +.. . . ...++ ...+...++.+++||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 4567999999999999999999974221111 100 0 0 00111 11245567889999999
Q ss_pred CCCCChHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCCcccCcccCcCHHH
Q psy3301 66 EVDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYSTVESSAKTLKNISE 145 (608)
Q Consensus 66 G~~~~~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~e~SAk~~~~i~~ 145 (608)
|+.+|.......++.+|++++|+|+++..... .. .+..... ..++|+++++||+|+. +.+..+
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~-~l~~~~~----~~~iPiiv~iNK~D~~-----------~a~~~~ 150 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ-TR-KLMEVCR----LRDTPIFTFINKLDRD-----------GREPLE 150 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCHH-HH-HHHHHHH----hcCCCEEEEEECCccc-----------ccCHHH
Confidence 99999888888999999999999998764322 22 3334333 3478999999999954 334556
Q ss_pred HHHHHHHHHhCCC
Q psy3301 146 MFYYAQKAVLHPM 158 (608)
Q Consensus 146 lf~~l~~~i~~~~ 158 (608)
++..+...+-.+.
T Consensus 151 ~l~~i~~~l~~~~ 163 (526)
T PRK00741 151 LLDEIEEVLGIAC 163 (526)
T ss_pred HHHHHHHHhCCCC
Confidence 6666665554433
No 397
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.19 E-value=2.6e-11 Score=117.04 Aligned_cols=136 Identities=15% Similarity=0.132 Sum_probs=78.5
Q ss_pred CCceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCce------EecceEeCCcce---------eEeeeec
Q psy3301 406 TRNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPY------TINTTTVYGQEK---------YLVLKEI 470 (608)
Q Consensus 406 ~r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~------~i~~~~v~Gqe~---------~~~l~~~ 470 (608)
.+..++|+|+|++|||||||++++++..+.....+.++.......+ .+.-++.+|... |......
T Consensus 38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 117 (204)
T cd01878 38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTLEE 117 (204)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHHHH
Confidence 4567999999999999999999999987532211111110000111 122234466521 1111110
Q ss_pred ccc-c----ccccCCCCcc--cccc------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--c
Q psy3301 471 LVR-D----EQLPVLLPVD--VDCD------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--A 535 (608)
Q Consensus 471 ~~~-~----v~d~~l~~~~--~~~~------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~ 535 (608)
+.. + ++| .++.. ..+. +.....++|+++|+||+|+....... .++...+. +++++| +
T Consensus 118 ~~~~d~ii~v~D--~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~-----~~~~~~~~-~~~~~Sa~~ 189 (204)
T cd01878 118 VAEADLLLHVVD--ASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE-----ERLEAGRP-DAVFISAKT 189 (204)
T ss_pred HhcCCeEEEEEE--CCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH-----HHhhcCCC-ceEEEEcCC
Confidence 111 1 566 44433 1111 22233579999999999997644332 34444444 388899 8
Q ss_pred CCCHHHHHHHHHHH
Q psy3301 536 ANNDREVFVKLATM 549 (608)
Q Consensus 536 ~~~v~e~F~~l~~~ 549 (608)
+.|++++|..|...
T Consensus 190 ~~gi~~l~~~L~~~ 203 (204)
T cd01878 190 GEGLDELLEAIEEL 203 (204)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999998764
No 398
>KOG0096|consensus
Probab=99.19 E-value=8.8e-12 Score=112.36 Aligned_cols=139 Identities=18% Similarity=0.170 Sum_probs=108.9
Q ss_pred ceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCC-------ceEecceEeCCcceeEeeeeccccc------
Q psy3301 408 NVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDP-------PYTINTTTVYGQEKYLVLKEILVRD------ 474 (608)
Q Consensus 408 ~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~-------~~~i~~~~v~Gqe~~~~l~~~~~~~------ 474 (608)
-.||++++|+.|.|||+++.|.+.++|...|.+|.+...+.. .+..+..+.+|||+|..+.+-||-.
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii 88 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII 88 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence 469999999999999999999999999999998888733222 2444455559999999999988877
Q ss_pred ccccCCCCcc--ccccccc-----CCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHHH
Q psy3301 475 EQLPVLLPVD--VDCDKYF-----STSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFVK 545 (608)
Q Consensus 475 v~d~~l~~~~--~~~~~~~-----~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~~ 545 (608)
+|| ++.+- .+..+|. .+.++|||+.|||.|..+.. ....+-.|-++.++. +++.| ++.|.+.-|.+
T Consensus 89 mFd--Vtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~-y~~iSaksn~NfekPFl~ 163 (216)
T KOG0096|consen 89 MFD--VTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQ-YYEISAKSNYNFERPFLW 163 (216)
T ss_pred Eee--eeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccccc--cccccceeeecccce-eEEeecccccccccchHH
Confidence 488 66543 3333332 25789999999999987633 245667788888887 89999 89999999999
Q ss_pred HHHHHc
Q psy3301 546 LATMAA 551 (608)
Q Consensus 546 l~~~a~ 551 (608)
+++...
T Consensus 164 LarKl~ 169 (216)
T KOG0096|consen 164 LARKLT 169 (216)
T ss_pred Hhhhhc
Confidence 998663
No 399
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.19 E-value=1.8e-10 Score=125.72 Aligned_cols=132 Identities=12% Similarity=0.127 Sum_probs=89.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCCc----CCC-------CC--------cceEe---cCccCCCceeEEEEeC
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPEL----VPS-------KA--------EEITI---PPDVTPEMVPTHIVDY 64 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~----~~~-------~~--------~~~~i---~~~~~~~~~~~~i~Dt 64 (608)
..+..+|+|+|.+++|||||+++|+...-... +.. .. ..+++ ...+...++.+++|||
T Consensus 8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDT 87 (527)
T TIGR00503 8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDT 87 (527)
T ss_pred hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEEC
Confidence 34567999999999999999999864221111 110 00 00111 1224566789999999
Q ss_pred CCCCCChHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCCcccCcccCcCHH
Q psy3301 65 SEVDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYSTVESSAKTLKNIS 144 (608)
Q Consensus 65 ~G~~~~~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~e~SAk~~~~i~ 144 (608)
||+..|.......++.+|++++|+|+++... .....+....+ ..++|+++++||+|+. +.+..
T Consensus 88 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~--~~t~~l~~~~~----~~~~PiivviNKiD~~-----------~~~~~ 150 (527)
T TIGR00503 88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE--TRTRKLMEVTR----LRDTPIFTFMNKLDRD-----------IRDPL 150 (527)
T ss_pred CChhhHHHHHHHHHHhCCEEEEEEECCCCCC--HHHHHHHHHHH----hcCCCEEEEEECcccc-----------CCCHH
Confidence 9999888888889999999999999987522 22223444443 2478999999999964 33556
Q ss_pred HHHHHHHHHHh
Q psy3301 145 EMFYYAQKAVL 155 (608)
Q Consensus 145 ~lf~~l~~~i~ 155 (608)
+++..+....-
T Consensus 151 ~ll~~i~~~l~ 161 (527)
T TIGR00503 151 ELLDEVENELK 161 (527)
T ss_pred HHHHHHHHHhC
Confidence 66666665553
No 400
>KOG0462|consensus
Probab=99.19 E-value=9.4e-11 Score=121.77 Aligned_cols=146 Identities=19% Similarity=0.194 Sum_probs=111.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCc---CCC---------CCcceEecCc---c---CCCceeEEEEeCCCCCCC
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPEL---VPS---------KAEEITIPPD---V---TPEMVPTHIVDYSEVDQT 70 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~---~~~---------~~~~~~i~~~---~---~~~~~~~~i~Dt~G~~~~ 70 (608)
+-.++.||-.-..|||||..||+...-... ... ....+|+... + ++..+.++++|||||-+|
T Consensus 59 ~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDF 138 (650)
T KOG0462|consen 59 NIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDF 138 (650)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccc
Confidence 345799999999999999999986543111 000 0011233221 1 244588999999999999
Q ss_pred hHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC------------------
Q psy3301 71 VDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST------------------ 132 (608)
Q Consensus 71 ~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~------------------ 132 (608)
.....+.+..+|++|+|+|++..-.-+.+...|+.. ..+.-+|.|.||+|++..+.
T Consensus 139 s~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAf------e~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~ 212 (650)
T KOG0462|consen 139 SGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAF------EAGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEV 212 (650)
T ss_pred cceehehhhhcCceEEEEEcCcCchHHHHHHHHHHH------HcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccce
Confidence 999999999999999999999886666666555542 34789999999999998765
Q ss_pred cccCcccCcCHHHHHHHHHHHHhCCCCC
Q psy3301 133 VESSAKTLKNISEMFYYAQKAVLHPMAP 160 (608)
Q Consensus 133 ~e~SAk~~~~i~~lf~~l~~~i~~~~~~ 160 (608)
+.+|||+|.|++++++.+++.+.-|...
T Consensus 213 i~vSAK~G~~v~~lL~AII~rVPpP~~~ 240 (650)
T KOG0462|consen 213 IYVSAKTGLNVEELLEAIIRRVPPPKGI 240 (650)
T ss_pred EEEEeccCccHHHHHHHHHhhCCCCCCC
Confidence 8899999999999999999998655543
No 401
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.18 E-value=5e-11 Score=109.67 Aligned_cols=133 Identities=13% Similarity=0.098 Sum_probs=84.9
Q ss_pred EEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEec-----ceEeCCcceeEee------eecccc--c------
Q psy3301 414 VIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTIN-----TTTVYGQEKYLVL------KEILVR--D------ 474 (608)
Q Consensus 414 viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~-----~~~v~Gqe~~~~l------~~~~~~--~------ 474 (608)
|+|.+|||||||++++++..+...+.+..+.+.....+.++ -++.+|++.|..+ ...++. .
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN 80 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence 58999999999999999986544333333331111223333 3444898876643 232232 2
Q ss_pred ccccCCCCcccccc--cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHHHHHHHH
Q psy3301 475 EQLPVLLPVDVDCD--KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFVKLATMA 550 (608)
Q Consensus 475 v~d~~l~~~~~~~~--~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~~l~~~a 550 (608)
++| ....+.... ......++|+++|+||+|+.....+. .+..++++.++++ .+++| ++.|++++|..|.+.+
T Consensus 81 v~d--~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~-~~~iSa~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 81 VVD--ATNLERNLYLTLQLLELGLPVVVALNMIDEAEKRGIK-IDLDKLSELLGVP-VVPTSARKGEGIDELKDAIAELA 156 (158)
T ss_pred Eee--CCcchhHHHHHHHHHHcCCCEEEEEehhhhcccccch-hhHHHHHHhhCCC-eEEEEccCCCCHHHHHHHHHHHh
Confidence 556 443321111 12223579999999999997654443 3456788888875 88999 8999999999998764
No 402
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.18 E-value=5.9e-11 Score=127.22 Aligned_cols=116 Identities=14% Similarity=0.155 Sum_probs=79.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCCc------C------------------CC----CCcceEe---cCccCCC
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPEL------V------------------PS----KAEEITI---PPDVTPE 55 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~------~------------------~~----~~~~~~i---~~~~~~~ 55 (608)
.++.++|+++|..++|||||+.+|+...-... + .. .....++ ...+...
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 46689999999999999999999985321100 0 00 0011121 1124456
Q ss_pred ceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEcCChhhHH-------HHHHhHHHHHhhhccCCCC-cEEEEEeCcCC
Q psy3301 56 MVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSVVDDASID-------RLSSHWLPFLRNCLVDTCL-PIVLVGNKVDL 127 (608)
Q Consensus 56 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~~~~s~~-------~~~~~~~~~i~~~~~~~~~-piilv~nK~Dl 127 (608)
+..++++|+||+++|...+...+..+|++|+|+|+++. .|+ ...++|. ... ..++ ++|+++||+|+
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~-~~~----~~gi~~iIV~vNKmD~ 157 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHAL-LAF----TLGVKQMICCCNKMDA 157 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHH-HHH----HcCCCcEEEEEEcccC
Confidence 78899999999999999999999999999999999873 222 2232332 222 2356 47889999997
Q ss_pred C
Q psy3301 128 V 128 (608)
Q Consensus 128 ~ 128 (608)
.
T Consensus 158 ~ 158 (447)
T PLN00043 158 T 158 (447)
T ss_pred C
Confidence 6
No 403
>PRK12739 elongation factor G; Reviewed
Probab=99.18 E-value=3e-10 Score=129.00 Aligned_cols=117 Identities=12% Similarity=0.044 Sum_probs=81.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCc----CC--------------CCCcceEecCccCCCceeEEEEeCCCCCC
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPEL----VP--------------SKAEEITIPPDVTPEMVPTHIVDYSEVDQ 69 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~----~~--------------~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~ 69 (608)
.+.++|+|+|..++|||||+++|+...-... +. ...+.......+...+..++++||||+..
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 85 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD 85 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence 3457899999999999999999985321110 11 00111111122344678899999999988
Q ss_pred ChHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCC
Q psy3301 70 TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDY 130 (608)
Q Consensus 70 ~~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 130 (608)
+...+...++.+|++++|+|+.+...-+... .+..+. ..++|+|+++||+|+...
T Consensus 86 f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~--i~~~~~----~~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 86 FTIEVERSLRVLDGAVAVFDAVSGVEPQSET--VWRQAD----KYGVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHHHhCeEEEEEeCCCCCCHHHHH--HHHHHH----HcCCCEEEEEECCCCCCC
Confidence 8888899999999999999998775433322 233333 246899999999998754
No 404
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.17 E-value=5.9e-11 Score=121.24 Aligned_cols=147 Identities=20% Similarity=0.172 Sum_probs=112.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCCc-------CCCC-----CcceEecC-----cc---CCCceeEEEEeCCC
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPEL-------VPSK-----AEEITIPP-----DV---TPEMVPTHIVDYSE 66 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~-------~~~~-----~~~~~i~~-----~~---~~~~~~~~i~Dt~G 66 (608)
..+-.+..|+-.-..|||||..||+.....-. +-.. ...+||.. .+ +++.+.++++||||
T Consensus 6 ~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPG 85 (603)
T COG0481 6 QKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPG 85 (603)
T ss_pred hhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCC
Confidence 34456789999999999999999986532211 0000 01123322 11 34678899999999
Q ss_pred CCCChHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC--------------
Q psy3301 67 VDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-------------- 132 (608)
Q Consensus 67 ~~~~~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-------------- 132 (608)
|-+|.....+.+..+.++++|+|++..-.-+.+...|+. ...+.-||-|.||+||+....
T Consensus 86 HVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlA------le~~LeIiPViNKIDLP~Adpervk~eIe~~iGid 159 (603)
T COG0481 86 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLA------LENNLEIIPVLNKIDLPAADPERVKQEIEDIIGID 159 (603)
T ss_pred ccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHH------HHcCcEEEEeeecccCCCCCHHHHHHHHHHHhCCC
Confidence 999999999999999999999999988666666644443 335789999999999998765
Q ss_pred ----cccCcccCcCHHHHHHHHHHHHhCCCC
Q psy3301 133 ----VESSAKTLKNISEMFYYAQKAVLHPMA 159 (608)
Q Consensus 133 ----~e~SAk~~~~i~~lf~~l~~~i~~~~~ 159 (608)
+.||||+|.||+++++.+++.+..|..
T Consensus 160 ~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g 190 (603)
T COG0481 160 ASDAVLVSAKTGIGIEDVLEAIVEKIPPPKG 190 (603)
T ss_pred cchheeEecccCCCHHHHHHHHHhhCCCCCC
Confidence 889999999999999999999977654
No 405
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.17 E-value=7.7e-11 Score=110.77 Aligned_cols=136 Identities=17% Similarity=0.160 Sum_probs=90.2
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCC---CceEecceEeCCcceeEeeeeccccc------ccc
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECD---PPYTINTTTVYGQEKYLVLKEILVRD------EQL 477 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~---~~~~i~~~~v~Gqe~~~~l~~~~~~~------v~d 477 (608)
+.-+||+++|..|+|||||++++..+.+.. ..||.+.+... ..+.+.-.+++|+++++.+|+.|+.+ |.|
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvD 90 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVD 90 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc-cCcccccccceeeeCcEEEEEEeccccccccccceeeccccceeEEEEe
Confidence 566899999999999999999999876554 44455441111 22334444559999999999999988 556
Q ss_pred cCCCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCC--------CceEEc--cCCC
Q psy3301 478 PVLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLS--------PAHSFS--AANN 538 (608)
Q Consensus 478 ~~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~--------~~~~~S--~~~~ 538 (608)
.++.+ .... ......++|+++++||.|+.+.- ..+++...+++. ..+.+| +|.|
T Consensus 91 --ssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~-----~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~G 163 (175)
T PF00025_consen 91 --SSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAM-----SEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEG 163 (175)
T ss_dssp --TTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSS-----THHHHHHHTTGGGTTSSSCEEEEEEBTTTTBT
T ss_pred --cccceeecccccchhhhcchhhcccceEEEEeccccccCcc-----hhhHHHhhhhhhhcccCCceEEEeeeccCCcC
Confidence 44433 1111 11223579999999999987532 223333322211 134455 8999
Q ss_pred HHHHHHHHHHHH
Q psy3301 539 DREVFVKLATMA 550 (608)
Q Consensus 539 v~e~F~~l~~~a 550 (608)
+.|.|.+|.+++
T Consensus 164 v~e~l~WL~~~~ 175 (175)
T PF00025_consen 164 VDEGLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC
Confidence 999999999864
No 406
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.16 E-value=1.5e-10 Score=123.68 Aligned_cols=142 Identities=17% Similarity=0.162 Sum_probs=96.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCC---CCcCCCCCcceEecCcc--------------------C----------
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEF---PELVPSKAEEITIPPDV--------------------T---------- 53 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~---~~~~~~~~~~~~i~~~~--------------------~---------- 53 (608)
.+..++|.++|.-..|||||+.+|.+... .++... ..|+...+ .
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~r---GiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVR---NITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCP 107 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHh---CCchhccccccccccCcccCCcccccccCCCcccccccc
Confidence 45679999999999999999999997432 211110 01110000 0
Q ss_pred ------CCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEcCCh-hhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcC
Q psy3301 54 ------PEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSVVDD-ASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVD 126 (608)
Q Consensus 54 ------~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~~~-~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~D 126 (608)
.....+.++|+||++.|...+...+..+|++++|+|+++. ...+... ++ ..+.. . .-.|+|+|.||+|
T Consensus 108 ~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~e-hl-~i~~~--l-gi~~iIVvlNKiD 182 (460)
T PTZ00327 108 GCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSE-HL-AAVEI--M-KLKHIIILQNKID 182 (460)
T ss_pred cccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHH-HH-HHHHH--c-CCCcEEEEEeccc
Confidence 0023689999999999988888889999999999999874 2222211 22 22221 1 1236899999999
Q ss_pred CCCCCC----------------------cccCcccCcCHHHHHHHHHHHHhC
Q psy3301 127 LVDYST----------------------VESSAKTLKNISEMFYYAQKAVLH 156 (608)
Q Consensus 127 l~~~~~----------------------~e~SAk~~~~i~~lf~~l~~~i~~ 156 (608)
+.+... +++||++|.|+++|++.+...+..
T Consensus 183 lv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 183 LVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred ccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 874221 889999999999999998875543
No 407
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.16 E-value=7.7e-11 Score=103.72 Aligned_cols=105 Identities=23% Similarity=0.176 Sum_probs=78.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCcCC-CCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEE
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPELVP-SKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYS 89 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d 89 (608)
+||+++|+.|||||+|+.++....+...+. ++.. +........+.++.+++||+
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~-------------------------~~~~~~~~~~s~~~~~~v~~ 55 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG-------------------------IDVYDPTSYESFDVVLQCWR 55 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh-------------------------hhhccccccCCCCEEEEEEE
Confidence 589999999999999999998877754322 2111 11112334578899999999
Q ss_pred cCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC---------cccCcccCcCHH
Q psy3301 90 VVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST---------VESSAKTLKNIS 144 (608)
Q Consensus 90 ~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~---------~e~SAk~~~~i~ 144 (608)
.++.++++.+ |.+.+.. ....++|+++++||.|+..... +++||+++.|+.
T Consensus 56 ~~~~~s~~~~---~~~~i~~-~~k~dl~~~~~~nk~dl~~~~~~~~~~~~~~~~~s~~~~~~~~ 115 (124)
T smart00010 56 VDDRDSADNK---NVPEVLV-GNKSDLPILVGGNRDVLEEERQVATEEGLEFAETSAKTPEEGE 115 (124)
T ss_pred ccCHHHHHHH---hHHHHHh-cCCCCCcEEEEeechhhHhhCcCCHHHHHHHHHHhCCCcchhh
Confidence 9999998765 7777764 3456789999999999854322 788999999884
No 408
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.15 E-value=9.3e-11 Score=131.97 Aligned_cols=135 Identities=17% Similarity=0.117 Sum_probs=90.1
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHHcCCCCCc------------CCCC---------------------CcceEecCcc
Q psy3301 6 SLRRNVRILLLGDRHVGKTSLILSLVSEEFPEL------------VPSK---------------------AEEITIPPDV 52 (608)
Q Consensus 6 ~~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~------------~~~~---------------------~~~~~i~~~~ 52 (608)
..++.++|+++|.+++|||||+++|+...-... ...+ .+.......+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 345679999999999999999999997553221 0010 0000111123
Q ss_pred CCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC
Q psy3301 53 TPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST 132 (608)
Q Consensus 53 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~ 132 (608)
...+..+.|+||||++.|...+...+..+|++++|+|++....-+... .+ ..+.. . ...|+|||+||+|+.+...
T Consensus 100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e-~~-~~~~~--~-~~~~iivvvNK~D~~~~~~ 174 (632)
T PRK05506 100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRR-HS-FIASL--L-GIRHVVLAVNKMDLVDYDQ 174 (632)
T ss_pred ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHH-HH-HHHHH--h-CCCeEEEEEEecccccchh
Confidence 345667899999999988777777889999999999997653222111 11 12221 1 1257899999999874111
Q ss_pred ------------------------cccCcccCcCHHH
Q psy3301 133 ------------------------VESSAKTLKNISE 145 (608)
Q Consensus 133 ------------------------~e~SAk~~~~i~~ 145 (608)
+++||++|.|+.+
T Consensus 175 ~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 175 EVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 6789999999874
No 409
>KOG1145|consensus
Probab=99.15 E-value=1.5e-10 Score=120.21 Aligned_cols=134 Identities=16% Similarity=0.141 Sum_probs=106.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCC----CcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcE
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSK----AEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVI 84 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 84 (608)
+.--|-|+|.-..|||||+.+|-+.......... ....+++.. .+-.+.+.||||+.-|..+..+..+-+|++
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p---~G~~iTFLDTPGHaAF~aMRaRGA~vtDIv 228 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP---SGKSITFLDTPGHAAFSAMRARGANVTDIV 228 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC---CCCEEEEecCCcHHHHHHHHhccCccccEE
Confidence 4456889999999999999999888766542222 233444433 457899999999999999998889999999
Q ss_pred EEEEEcCCh---hhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------------cccCcc
Q psy3301 85 CLVYSVVDD---ASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------------VESSAK 138 (608)
Q Consensus 85 ilV~d~~~~---~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------------~e~SAk 138 (608)
++|+.++|. ++.+.+. . ....++|+|+.+||+|.++... +++||+
T Consensus 229 VLVVAadDGVmpQT~EaIk-----h----Ak~A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl 299 (683)
T KOG1145|consen 229 VLVVAADDGVMPQTLEAIK-----H----AKSANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISAL 299 (683)
T ss_pred EEEEEccCCccHhHHHHHH-----H----HHhcCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEeecc
Confidence 999999985 5655554 1 3456899999999999887654 899999
Q ss_pred cCcCHHHHHHHHHHHH
Q psy3301 139 TLKNISEMFYYAQKAV 154 (608)
Q Consensus 139 ~~~~i~~lf~~l~~~i 154 (608)
+|.|++.|-+.+.-..
T Consensus 300 ~g~nl~~L~eaill~A 315 (683)
T KOG1145|consen 300 TGENLDLLEEAILLLA 315 (683)
T ss_pred cCCChHHHHHHHHHHH
Confidence 9999999988776554
No 410
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.14 E-value=1.4e-10 Score=124.42 Aligned_cols=117 Identities=16% Similarity=0.141 Sum_probs=78.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCCc------------------------CCC----CCcceEe---cCccCCC
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPEL------------------------VPS----KAEEITI---PPDVTPE 55 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~------------------------~~~----~~~~~~i---~~~~~~~ 55 (608)
.++.++|+++|..++|||||+.+|+...-... ... .....++ ...+...
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 45679999999999999999999986321100 000 0011111 1224556
Q ss_pred ceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEcCChh---hH---HHHHHhHHHHHhhhccCCCCc-EEEEEeCcCCC
Q psy3301 56 MVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSVVDDA---SI---DRLSSHWLPFLRNCLVDTCLP-IVLVGNKVDLV 128 (608)
Q Consensus 56 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~~~~---s~---~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~ 128 (608)
+..++|+||||+++|...+...+..+|++++|+|++... .| ....+.|.- +. ..++| +|++.||+|..
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~-~~----~~gi~~iiv~vNKmD~~ 158 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALL-AF----TLGVKQMIVCINKMDDK 158 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHH-HH----HcCCCeEEEEEEccccc
Confidence 788999999999999888888999999999999998642 01 111223332 22 23666 67999999943
No 411
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.13 E-value=5.4e-11 Score=110.14 Aligned_cols=135 Identities=13% Similarity=0.017 Sum_probs=78.9
Q ss_pred EEEEEccCCCchHHHHHHHhcCC---CCCCCCCCCCC--Cc----CCCceEecceEeCCcceeEeeeeccccc------c
Q psy3301 411 VCHVIGNRSTGKTALCQSILRKH---HDSSKTSITSP--VE----CDPPYTINTTTVYGQEKYLVLKEILVRD------E 475 (608)
Q Consensus 411 k~~viG~~gvGKTsll~~f~~~~---~~~~~~~t~~~--~~----~~~~~~i~~~~v~Gqe~~~~l~~~~~~~------v 475 (608)
.++|+|++|||||||++++++.. +...+.++.+. .. +.....+.-++.+|+++|......++++ |
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V 81 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLV 81 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEE
Confidence 58899999999999999999743 33222222222 00 0012234445669999885433333333 6
Q ss_pred cccCCCC-c--c--cccccccCCCC-CcEEEEEeCCCCCcch--hcccccHHHHHHHc--CCCCceEEc--cCCCHHHHH
Q psy3301 476 QLPVLLP-V--D--VDCDKYFSTSK-IPVMLVAGKSDMPRAR--QDYLMQPDIFCETH--KLSPAHSFS--AANNDREVF 543 (608)
Q Consensus 476 ~d~~l~~-~--~--~~~~~~~~~~~-~p~ilVgnK~DL~~~~--~~~~~~~~~~~~~~--~~~~~~~~S--~~~~v~e~F 543 (608)
+| +++ + + .... .....+ .|+++|+||+|+.... +....+..++.+.. ...+++++| ++.|++++|
T Consensus 82 ~d--~~~~~~~~~~~~~~-~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 158 (164)
T cd04171 82 VA--ADEGIMPQTREHLE-ILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEELK 158 (164)
T ss_pred EE--CCCCccHhHHHHHH-HHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHH
Confidence 77 543 1 1 1111 111123 4999999999997542 12223344444442 223488899 899999999
Q ss_pred HHHHH
Q psy3301 544 VKLAT 548 (608)
Q Consensus 544 ~~l~~ 548 (608)
..+..
T Consensus 159 ~~l~~ 163 (164)
T cd04171 159 EYLDE 163 (164)
T ss_pred HHHhh
Confidence 98864
No 412
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.12 E-value=9.9e-11 Score=112.10 Aligned_cols=143 Identities=15% Similarity=0.096 Sum_probs=85.4
Q ss_pred CCCceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCC----cCCCceEecceEeCCc----------ceeEeeeec
Q psy3301 405 TTRNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPV----ECDPPYTINTTTVYGQ----------EKYLVLKEI 470 (608)
Q Consensus 405 ~~r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~----~~~~~~~i~~~~v~Gq----------e~~~~l~~~ 470 (608)
..+...+++|+|.+|||||||+++++++.+...+.++++.+ .+.....+.-++++|. ++|..+...
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~ 99 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEE 99 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence 34577899999999999999999999987665555555431 0111112222444772 333323222
Q ss_pred cccc---------ccccCCCCcccc----cccccCCCCCcEEEEEeCCCCCcchh--cccccHHHHHHHcCCCCceEEc-
Q psy3301 471 LVRD---------EQLPVLLPVDVD----CDKYFSTSKIPVMLVAGKSDMPRARQ--DYLMQPDIFCETHKLSPAHSFS- 534 (608)
Q Consensus 471 ~~~~---------v~d~~l~~~~~~----~~~~~~~~~~p~ilVgnK~DL~~~~~--~~~~~~~~~~~~~~~~~~~~~S- 534 (608)
+++. ++| .+..... ..++....++|+++|+||+|+.+..+ +..++..++...... +.+++|
T Consensus 100 ~~~~~~~~~~~~~v~d--~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~-~~~~~Sa 176 (196)
T PRK00454 100 YLRTRENLKGVVLLID--SRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDD-EVILFSS 176 (196)
T ss_pred HHHhCccceEEEEEEe--cCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCC-ceEEEEc
Confidence 2221 233 2221111 11333346799999999999975332 222334444444333 378888
Q ss_pred -cCCCHHHHHHHHHHHH
Q psy3301 535 -AANNDREVFVKLATMA 550 (608)
Q Consensus 535 -~~~~v~e~F~~l~~~a 550 (608)
++.|++++|..|...+
T Consensus 177 ~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 177 LKKQGIDELRAAIAKWL 193 (196)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 8999999999998765
No 413
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.11 E-value=1.1e-10 Score=107.78 Aligned_cols=129 Identities=16% Similarity=0.156 Sum_probs=81.2
Q ss_pred EEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecceEeCCc-----ceeEeeeecccc-c----ccccCC
Q psy3301 411 VCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINTTTVYGQ-----EKYLVLKEILVR-D----EQLPVL 480 (608)
Q Consensus 411 k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~~~v~Gq-----e~~~~l~~~~~~-~----v~d~~l 480 (608)
+|+++|.+|||||||++++.+. +... ..+.+. .|... +.++++|+ +.+..+...+.. + ++| .
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~-~~~~-~~~~~v-~~~~~---~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d--~ 74 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGN-YTLA-RKTQAV-EFNDK---GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHG--A 74 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCC-CccC-ccceEE-EECCC---CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEe--C
Confidence 7999999999999999997754 3221 223322 11111 24677886 222222111111 1 566 5
Q ss_pred CCccccccccc--CCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCC-CCceEEc--cCCCHHHHHHHHHHHH
Q psy3301 481 LPVDVDCDKYF--STSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKL-SPAHSFS--AANNDREVFVKLATMA 550 (608)
Q Consensus 481 ~~~~~~~~~~~--~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~-~~~~~~S--~~~~v~e~F~~l~~~a 550 (608)
++.+.....+. ...+.|+++|+||+|+.+.. .++..++++++++ .|.+++| ++.|++++|..+++.+
T Consensus 75 ~~~~s~~~~~~~~~~~~~~ii~v~nK~Dl~~~~---~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~ 146 (158)
T PRK15467 75 NDPESRLPAGLLDIGVSKRQIAVISKTDMPDAD---VAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLASLT 146 (158)
T ss_pred CCcccccCHHHHhccCCCCeEEEEEccccCccc---HHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHHHhc
Confidence 54432222111 13467999999999996532 3456788888886 3588888 8999999999998866
No 414
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.11 E-value=2.3e-09 Score=112.89 Aligned_cols=81 Identities=14% Similarity=0.257 Sum_probs=55.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCC-cCCCCCcceEecC-----c-----------------cC-CCceeEEEEeCCC
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPE-LVPSKAEEITIPP-----D-----------------VT-PEMVPTHIVDYSE 66 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~-~~~~~~~~~~i~~-----~-----------------~~-~~~~~~~i~Dt~G 66 (608)
++|+|+|.||||||||+++|++..+.. +++.++-..++.. . .. ...+++++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 689999999999999999999887653 3544331122211 0 00 1236789999999
Q ss_pred CC----CChHHH---HHHHHhcCcEEEEEEcC
Q psy3301 67 VD----QTVDEL---TEEIQKAHVICLVYSVV 91 (608)
Q Consensus 67 ~~----~~~~~~---~~~~~~ad~iilV~d~~ 91 (608)
.. .....- ...++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 52 333333 34489999999999997
No 415
>PRK09866 hypothetical protein; Provisional
Probab=99.11 E-value=5.4e-09 Score=112.41 Aligned_cols=94 Identities=14% Similarity=0.064 Sum_probs=68.3
Q ss_pred eeEEEEeCCCCCCC-----hHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCC
Q psy3301 57 VPTHIVDYSEVDQT-----VDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYS 131 (608)
Q Consensus 57 ~~~~i~Dt~G~~~~-----~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 131 (608)
..+.++||||.... ...+...+..+|+|++|.|++...+.... .....++. ...+.|+++|+||+|+....
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De--eIlk~Lkk--~~K~~PVILVVNKIDl~dre 305 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE--EVREAILA--VGQSVPLYVLVNKFDQQDRN 305 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH--HHHHHHHh--cCCCCCEEEEEEcccCCCcc
Confidence 35789999997542 22345679999999999999875443332 34455552 22346999999999986421
Q ss_pred C------------------------cccCcccCcCHHHHHHHHHHHH
Q psy3301 132 T------------------------VESSAKTLKNISEMFYYAQKAV 154 (608)
Q Consensus 132 ~------------------------~e~SAk~~~~i~~lf~~l~~~i 154 (608)
. +++||++|.|++++...+.+.-
T Consensus 306 eddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~~ 352 (741)
T PRK09866 306 SDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANNG 352 (741)
T ss_pred cchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhCC
Confidence 1 8999999999999999887643
No 416
>PTZ00099 rab6; Provisional
Probab=99.11 E-value=1.4e-10 Score=109.00 Aligned_cols=119 Identities=18% Similarity=0.123 Sum_probs=91.2
Q ss_pred CCCCCCCCCCCCCCcCCCceEecc-------eEeCCcceeEeeeeccccc------ccccCCCCcc--cccccc------
Q psy3301 432 KHHDSSKTSITSPVECDPPYTINT-------TTVYGQEKYLVLKEILVRD------EQLPVLLPVD--VDCDKY------ 490 (608)
Q Consensus 432 ~~~~~~~~~t~~~~~~~~~~~i~~-------~~v~Gqe~~~~l~~~~~~~------v~d~~l~~~~--~~~~~~------ 490 (608)
+.|...|.+|++.+.+...+.+++ .+++|+++|..+++.++++ ||| +++.+ +.+..|
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D--~t~~~sf~~~~~w~~~i~~ 80 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYD--ITNRQSFENTTKWIQDILN 80 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEE--CCCHHHHHHHHHHHHHHHH
Confidence 467788888887733333444433 2339999999999988888 888 87765 333211
Q ss_pred cCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHHHHHHHHcCC
Q psy3301 491 FSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFVKLATMAAFP 553 (608)
Q Consensus 491 ~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~~l~~~a~~p 553 (608)
...+++|++|||||+||.+.+++...++..+++.++.. ++++| ++.||+++|..|++.+...
T Consensus 81 ~~~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~-~~e~SAk~g~nV~~lf~~l~~~l~~~ 144 (176)
T PTZ00099 81 ERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTM-FHETSAKAGHNIKVLFKKIAAKLPNL 144 (176)
T ss_pred hcCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 12367999999999999877778888899999999875 88999 8999999999999987543
No 417
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.10 E-value=6e-10 Score=110.32 Aligned_cols=145 Identities=16% Similarity=0.077 Sum_probs=102.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCc-CCCCCcceEecCccCCCceeEEEEeCCCCCCC-------hHHHHHHHHhcCc
Q psy3301 12 RILLLGDRHVGKTSLILSLVSEEFPEL-VPSKAEEITIPPDVTPEMVPTHIVDYSEVDQT-------VDELTEEIQKAHV 83 (608)
Q Consensus 12 kI~lvG~~~vGKTSLi~~l~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~~~ad~ 83 (608)
-|-+||-||+|||||++.+...+.... |+.++-...+.+--....-.+.+-|.||.-+- -......+.++.+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~v 240 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRV 240 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhhhe
Confidence 467999999999999999999876543 77664333332211244556999999985332 1224567889999
Q ss_pred EEEEEEcCChh---hHHHHHHhHHHHHhhh-ccCCCCcEEEEEeCcCCCCCCC--------------cc----cCcccCc
Q psy3301 84 ICLVYSVVDDA---SIDRLSSHWLPFLRNC-LVDTCLPIVLVGNKVDLVDYST--------------VE----SSAKTLK 141 (608)
Q Consensus 84 iilV~d~~~~~---s~~~~~~~~~~~i~~~-~~~~~~piilv~nK~Dl~~~~~--------------~e----~SAk~~~ 141 (608)
++.|+|++..+ -.+... .+..++..+ ....+.|.+||+||+|+..... .. +||.++.
T Consensus 241 L~hviD~s~~~~~dp~~~~~-~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~ 319 (369)
T COG0536 241 LLHVIDLSPIDGRDPIEDYQ-TIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTRE 319 (369)
T ss_pred eEEEEecCcccCCCHHHHHH-HHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhccc
Confidence 99999998543 244444 444555544 4456789999999999665543 12 9999999
Q ss_pred CHHHHHHHHHHHHhCC
Q psy3301 142 NISEMFYYAQKAVLHP 157 (608)
Q Consensus 142 ~i~~lf~~l~~~i~~~ 157 (608)
|++++...+.+.+...
T Consensus 320 g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 320 GLDELLRALAELLEET 335 (369)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999988877553
No 418
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.10 E-value=1.6e-09 Score=103.83 Aligned_cols=117 Identities=14% Similarity=0.115 Sum_probs=70.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCcC--CCCCcceEecCccCCCceeEEEEeCCCCCCCh---HHHHH--------H
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPELV--PSKAEEITIPPDVTPEMVPTHIVDYSEVDQTV---DELTE--------E 77 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~---~~~~~--------~ 77 (608)
++|+++|.+|||||||+|++++....... .+..+...........+..+.++||||..... ..+.. .
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 48999999999999999999998643221 11111111111122356789999999965542 11111 1
Q ss_pred HHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhh-ccCCCCcEEEEEeCcCCCCC
Q psy3301 78 IQKAHVICLVYSVVDDASIDRLSSHWLPFLRNC-LVDTCLPIVLVGNKVDLVDY 130 (608)
Q Consensus 78 ~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~-~~~~~~piilv~nK~Dl~~~ 130 (608)
...+|++++|.++.+. +-+.. ..+..+... ....-.++++|.|+.|....
T Consensus 81 ~~g~~~illVi~~~~~-t~~d~--~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~ 131 (196)
T cd01852 81 APGPHAFLLVVPLGRF-TEEEE--QAVETLQELFGEKVLDHTIVLFTRGDDLEG 131 (196)
T ss_pred CCCCEEEEEEEECCCc-CHHHH--HHHHHHHHHhChHhHhcEEEEEECccccCC
Confidence 2467999999998862 21211 233333321 11122488999999997543
No 419
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.10 E-value=1.1e-10 Score=108.72 Aligned_cols=137 Identities=14% Similarity=0.090 Sum_probs=84.2
Q ss_pred EEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCC---------CceEecceEeCCcceeEeeeeccccc------c
Q psy3301 411 VCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECD---------PPYTINTTTVYGQEKYLVLKEILVRD------E 475 (608)
Q Consensus 411 k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~---------~~~~i~~~~v~Gqe~~~~l~~~~~~~------v 475 (608)
.++|+|++|||||||++++++..+...+.++++. .+. ....+.-++.+|++.|..++..+++. +
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v 80 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQ-HIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILV 80 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEE-eeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEE
Confidence 4899999999999999999998887654322222 111 12234445669988887766655444 5
Q ss_pred cccCCCCcc--c--ccccccCCCCCcEEEEEeCCCCCcchhcc-cccHHHHHH----HcC-CCCceEEc--cCCCHHHHH
Q psy3301 476 QLPVLLPVD--V--DCDKYFSTSKIPVMLVAGKSDMPRARQDY-LMQPDIFCE----THK-LSPAHSFS--AANNDREVF 543 (608)
Q Consensus 476 ~d~~l~~~~--~--~~~~~~~~~~~p~ilVgnK~DL~~~~~~~-~~~~~~~~~----~~~-~~~~~~~S--~~~~v~e~F 543 (608)
+| .++.. . .+-......++|+++|+||+|+....... ..+..++.. .++ ..+++++| ++.|+.++|
T Consensus 81 ~d--~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 158 (168)
T cd01887 81 VA--ADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLL 158 (168)
T ss_pred EE--CCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHH
Confidence 66 44321 1 11122234678999999999987432110 111111111 111 12478888 899999999
Q ss_pred HHHHHHH
Q psy3301 544 VKLATMA 550 (608)
Q Consensus 544 ~~l~~~a 550 (608)
..|.+.+
T Consensus 159 ~~l~~~~ 165 (168)
T cd01887 159 EAILLLA 165 (168)
T ss_pred HHHHHhh
Confidence 9999876
No 420
>KOG0036|consensus
Probab=99.09 E-value=2.9e-10 Score=113.92 Aligned_cols=151 Identities=15% Similarity=0.164 Sum_probs=126.4
Q ss_pred ccChHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCC-CChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHH
Q psy3301 167 QELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAP-LSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHN 245 (608)
Q Consensus 167 ~~l~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~-~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~ 245 (608)
.+..++....++.+|+.+|.+++|.++..+|...+.+ ++.+ +..+....+++.++.+ .||.++|++|...+.
T Consensus 6 ~~~~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~-l~~~~~~~~~~~~l~~~~d~~------~dg~vDy~eF~~Y~~ 78 (463)
T KOG0036|consen 6 RETDEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEK-LDHPKPNYEAAKMLFSAMDAN------RDGRVDYSEFKRYLD 78 (463)
T ss_pred cCCcHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHh-cCCCCCchHHHHHHHHhcccC------cCCcccHHHHHHHHH
Confidence 3556666778999999999999999999999988776 5555 6777888999999998 899999999984432
Q ss_pred HHHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccC
Q psy3301 246 LFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLC 325 (608)
Q Consensus 246 ~~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~ 325 (608)
. ....|.+.|...|.++||.|.++|+...++.+
T Consensus 79 ----~-------------------------------------------~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~ 111 (463)
T KOG0036|consen 79 ----N-------------------------------------------KELELYRIFQSIDLEHDGKIDPNEIWRYLKDL 111 (463)
T ss_pred ----H-------------------------------------------hHHHHHHHHhhhccccCCccCHHHHHHHHHHh
Confidence 1 14567888999999999999999999999999
Q ss_pred CCCCCCCCccccccceecCCCCccchhhHHhHhhhhhccCHHHHHH
Q psy3301 326 PPECPPWTDREMRAMVATNSKGWITMQGFLCYWILTTLFNVNKTLE 371 (608)
Q Consensus 326 ~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~~~~~~~~~~~~ 371 (608)
|.+....+...+++.+|.++++.|+++||-.+..+....|...++.
T Consensus 112 gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p~s~i~di~~ 157 (463)
T KOG0036|consen 112 GIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLYPESDLEDIYD 157 (463)
T ss_pred CCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcCChhHHHHHHH
Confidence 8666666678889999999999999999999988887666666643
No 421
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.08 E-value=2.2e-10 Score=100.28 Aligned_cols=91 Identities=20% Similarity=0.290 Sum_probs=51.2
Q ss_pred EEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecceEeCCcceeEeeeecc------------ccc----
Q psy3301 411 VCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINTTTVYGQEKYLVLKEIL------------VRD---- 474 (608)
Q Consensus 411 k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~~~v~Gqe~~~~l~~~~------------~~~---- 474 (608)
||+|+|++|||||||+++|+++.+.....+.... ...+.++...+.++.....+++.. ...
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ 77 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETS---EITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAV 77 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SST---TSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccC---CCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEE
Confidence 7999999999999999999999887211111111 334444444443333333333322 111
Q ss_pred --ccccCCCCcc--cccc---ccc-----CCCCCcEEEEEeCCC
Q psy3301 475 --EQLPVLLPVD--VDCD---KYF-----STSKIPVMLVAGKSD 506 (608)
Q Consensus 475 --v~d~~l~~~~--~~~~---~~~-----~~~~~p~ilVgnK~D 506 (608)
||| +++.+ .... +++ ..+++|++|||||.|
T Consensus 78 ilv~D--~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 78 ILVYD--LSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EEEEE--CCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EEEEc--CCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 788 77655 2221 111 146799999999998
No 422
>KOG0073|consensus
Probab=99.08 E-value=2.4e-10 Score=100.82 Aligned_cols=141 Identities=16% Similarity=0.122 Sum_probs=97.1
Q ss_pred eEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCc---CCCceEecceEeCCcceeEeeeeccccc------ccccC
Q psy3301 409 VYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVE---CDPPYTINTTTVYGQEKYLVLKEILVRD------EQLPV 479 (608)
Q Consensus 409 ~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~---~~~~~~i~~~~v~Gqe~~~~l~~~~~~~------v~d~~ 479 (608)
.++|.++|..|+|||+++++|.+..-. ...||.+-+. -...+..+-.++.||...+..|..||.. |+|
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~~~-~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvD-- 92 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGEDTD-TISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVD-- 92 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCCcc-ccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEE--
Confidence 699999999999999999999987743 3334444310 0133445555669999999999999988 777
Q ss_pred CCCcc--cccccc-------cCCCCCcEEEEEeCCCCCcch---hc-ccccHHHHHHHcCCCCceEEc--cCCCHHHHHH
Q psy3301 480 LLPVD--VDCDKY-------FSTSKIPVMLVAGKSDMPRAR---QD-YLMQPDIFCETHKLSPAHSFS--AANNDREVFV 544 (608)
Q Consensus 480 l~~~~--~~~~~~-------~~~~~~p~ilVgnK~DL~~~~---~~-~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~ 544 (608)
.++.. +.|.+. -.....|+++++||.|+...- .+ ..-.-+++++....+ .+-+| +|+++.+-|.
T Consensus 93 ssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~-l~~cs~~tge~l~~gid 171 (185)
T KOG0073|consen 93 SSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWR-LVKCSAVTGEDLLEGID 171 (185)
T ss_pred CchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCce-EEEEeccccccHHHHHH
Confidence 44433 444411 112458999999999998321 11 123445566666665 56677 8999999999
Q ss_pred HHHHHHcCC
Q psy3301 545 KLATMAAFP 553 (608)
Q Consensus 545 ~l~~~a~~p 553 (608)
+|+...+..
T Consensus 172 WL~~~l~~r 180 (185)
T KOG0073|consen 172 WLCDDLMSR 180 (185)
T ss_pred HHHHHHHHH
Confidence 999877653
No 423
>KOG3883|consensus
Probab=99.07 E-value=1e-09 Score=95.35 Aligned_cols=146 Identities=18% Similarity=0.188 Sum_probs=100.5
Q ss_pred ceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecceEe-------------CCccee-Eeeeecccc
Q psy3301 408 NVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINTTTV-------------YGQEKY-LVLKEILVR 473 (608)
Q Consensus 408 ~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~~~v-------------~Gqe~~-~~l~~~~~~ 473 (608)
.+.|++|.|-.+||||++|.+++-++......-.+++ .++.+-.++. +|-+.+ .-|-..|+.
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTi----EDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q 83 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTI----EDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQ 83 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccch----hhheeEeeecCCChhheEEEeecccccCchhhhhHhHhc
Confidence 4689999999999999999999987665443322322 2223333332 332222 112222222
Q ss_pred c------ccccCCCCcc---------cccccccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cC
Q psy3301 474 D------EQLPVLLPVD---------VDCDKYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AA 536 (608)
Q Consensus 474 ~------v~d~~l~~~~---------~~~~~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~ 536 (608)
- ||+ ..+.+ ..+|+.-....+||++.|||+|+.+.+++...-+..||++-... -++++ ..
T Consensus 84 ~aDafVLVYs--~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvk-l~eVta~dR 160 (198)
T KOG3883|consen 84 FADAFVLVYS--PMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVK-LWEVTAMDR 160 (198)
T ss_pred cCceEEEEec--CCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhhee-EEEEEeccc
Confidence 1 665 44433 22234445678999999999999999999899999999999887 78888 68
Q ss_pred CCHHHHHHHHHHHHcCCCCCCccc
Q psy3301 537 NNDREVFVKLATMAAFPRFHPAWM 560 (608)
Q Consensus 537 ~~v~e~F~~l~~~a~~p~~~~~~~ 560 (608)
.++-|.|..++.....|.++++++
T Consensus 161 ~sL~epf~~l~~rl~~pqskS~Fp 184 (198)
T KOG3883|consen 161 PSLYEPFTYLASRLHQPQSKSTFP 184 (198)
T ss_pred hhhhhHHHHHHHhccCCcccccCc
Confidence 899999999999998888655444
No 424
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.05 E-value=2.5e-10 Score=106.48 Aligned_cols=135 Identities=17% Similarity=0.123 Sum_probs=79.1
Q ss_pred EEEEEccCCCchHHHHHHHhcCCCCCCC------CCCCCCCcCCCceEecceEeCCcc----eeEeeeeccccc------
Q psy3301 411 VCHVIGNRSTGKTALCQSILRKHHDSSK------TSITSPVECDPPYTINTTTVYGQE----KYLVLKEILVRD------ 474 (608)
Q Consensus 411 k~~viG~~gvGKTsll~~f~~~~~~~~~------~~t~~~~~~~~~~~i~~~~v~Gqe----~~~~l~~~~~~~------ 474 (608)
.|+++|.+|||||||++++.+....... .++.+...+.....++-++++|+. .+..+...+++.
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 4899999999999999999976542111 111111001111244455668853 222222222221
Q ss_pred ---ccccCCCCc-c--cccc-------ccc-CCCCCcEEEEEeCCCCCcchhcccccHHHHHHHc-CCCCceEEc--cCC
Q psy3301 475 ---EQLPVLLPV-D--VDCD-------KYF-STSKIPVMLVAGKSDMPRARQDYLMQPDIFCETH-KLSPAHSFS--AAN 537 (608)
Q Consensus 475 ---v~d~~l~~~-~--~~~~-------~~~-~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~-~~~~~~~~S--~~~ 537 (608)
++| +++. + +... ... ...+.|+++|+||+|+...... .....++.++. +.+ .+++| ++.
T Consensus 82 vi~v~D--~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~-~~~~Sa~~~~ 157 (170)
T cd01898 82 LLHVID--LSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKP-VFPISALTGE 157 (170)
T ss_pred EEEEEe--cCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCC-EEEEecCCCC
Confidence 677 6655 2 2211 111 1247899999999999764443 23344555553 443 78888 899
Q ss_pred CHHHHHHHHHHH
Q psy3301 538 NDREVFVKLATM 549 (608)
Q Consensus 538 ~v~e~F~~l~~~ 549 (608)
|++++|..|++.
T Consensus 158 gi~~l~~~i~~~ 169 (170)
T cd01898 158 GLDELLRKLAEL 169 (170)
T ss_pred CHHHHHHHHHhh
Confidence 999999999864
No 425
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.03 E-value=5.8e-10 Score=112.25 Aligned_cols=113 Identities=15% Similarity=0.263 Sum_probs=67.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHcCCCCCcC----------CCCCcceEecCcc--CCCceeEEEEeCCCCCCChHH----
Q psy3301 10 NVRILLLGDRHVGKTSLILSLVSEEFPELV----------PSKAEEITIPPDV--TPEMVPTHIVDYSEVDQTVDE---- 73 (608)
Q Consensus 10 ~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~----------~~~~~~~~i~~~~--~~~~~~~~i~Dt~G~~~~~~~---- 73 (608)
.++|+|+|++|+|||||+++|++..+.... +++.........+ .+..+.+.+|||||.......
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 579999999999999999999998865431 1111111112222 333477999999995443210
Q ss_pred --------------HH--------HHHH--hcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCC
Q psy3301 74 --------------LT--------EEIQ--KAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLV 128 (608)
Q Consensus 74 --------------~~--------~~~~--~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 128 (608)
+. ..+. ++|+++++++.+.. .........+..+. .++|+++|+||+|+.
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~-----~~v~vi~VinK~D~l 156 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS-----KRVNIIPVIAKADTL 156 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh-----ccCCEEEEEECCCcC
Confidence 00 1111 36677777776542 11111112333333 268999999999974
No 426
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.02 E-value=1.2e-09 Score=105.93 Aligned_cols=116 Identities=19% Similarity=0.258 Sum_probs=73.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCc---CCCCCcceEecCccCCCceeEEEEeCCCCCCChHH-----HHHHHHhcCc
Q psy3301 12 RILLLGDRHVGKTSLILSLVSEEFPEL---VPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDE-----LTEEIQKAHV 83 (608)
Q Consensus 12 kI~lvG~~~vGKTSLi~~l~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~-----~~~~~~~ad~ 83 (608)
||+++|+.++||||+.+-+..+..+.. ..++. .......-....+.+++||+||+..+... ....++++.+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~-~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTI-DVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG------SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcC-CceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 799999999999999998887654433 12221 11111111245678999999999876554 4667899999
Q ss_pred EEEEEEcCChhhHHHHHHhHHHHHhhh-ccCCCCcEEEEEeCcCCCC
Q psy3301 84 ICLVYSVVDDASIDRLSSHWLPFLRNC-LVDTCLPIVLVGNKVDLVD 129 (608)
Q Consensus 84 iilV~d~~~~~s~~~~~~~~~~~i~~~-~~~~~~piilv~nK~Dl~~ 129 (608)
+|+|+|+.+.+-.+.+. ++...+... ...+++.+-+..+|+|+..
T Consensus 80 LIyV~D~qs~~~~~~l~-~~~~~i~~l~~~sp~~~v~vfiHK~D~l~ 125 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLA-YLSDCIEALRQYSPNIKVFVFIHKMDLLS 125 (232)
T ss_dssp EEEEEETT-STCHHHHH-HHHHHHHHHHHHSTT-EEEEEEE-CCCS-
T ss_pred EEEEEEcccccHHHHHH-HHHHHHHHHHHhCCCCeEEEEEeecccCC
Confidence 99999999554333333 444433332 4567999999999999854
No 427
>PRK12740 elongation factor G; Reviewed
Probab=99.01 E-value=4.9e-09 Score=119.21 Aligned_cols=108 Identities=16% Similarity=0.157 Sum_probs=76.0
Q ss_pred EcCCCCCHHHHHHHHHcCCCCCc----CCCC-C----------cceEe---cCccCCCceeEEEEeCCCCCCChHHHHHH
Q psy3301 16 LGDRHVGKTSLILSLVSEEFPEL----VPSK-A----------EEITI---PPDVTPEMVPTHIVDYSEVDQTVDELTEE 77 (608)
Q Consensus 16 vG~~~vGKTSLi~~l~~~~~~~~----~~~~-~----------~~~~i---~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 77 (608)
+|..++|||||+++|+...-... +... . ..+++ ...+...++.+++|||||+..+...+...
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 69999999999999976532211 1100 0 00111 11234467889999999998888888889
Q ss_pred HHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCC
Q psy3301 78 IQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVD 129 (608)
Q Consensus 78 ~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 129 (608)
++.+|++++|+|+++..+..... .|. .+. ..++|+++|+||+|+..
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~-~~~-~~~----~~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTET-VWR-QAE----KYGVPRIIFVNKMDRAG 126 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHH-HHH-HHH----HcCCCEEEEEECCCCCC
Confidence 99999999999999877665543 343 333 24789999999999753
No 428
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.00 E-value=4.6e-10 Score=107.47 Aligned_cols=137 Identities=14% Similarity=0.028 Sum_probs=82.7
Q ss_pred EEEEEccCCCchHHHHHHHhc--CCCCCCCC------------CCCCCCcCC-------CceEecceEeCCcceeEeeee
Q psy3301 411 VCHVIGNRSTGKTALCQSILR--KHHDSSKT------------SITSPVECD-------PPYTINTTTVYGQEKYLVLKE 469 (608)
Q Consensus 411 k~~viG~~gvGKTsll~~f~~--~~~~~~~~------------~t~~~~~~~-------~~~~i~~~~v~Gqe~~~~l~~ 469 (608)
+++++|++|||||||+++|+. +.|...+. .+.+.+... ..+.++-++.+|+++|..+.+
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~ 83 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVE 83 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHH
Confidence 799999999999999999997 55654431 112221111 123344455699999887777
Q ss_pred ccccc------ccccCCCCcc-ccc---ccccCCCCCcEEEEEeCCCCCcchh-cccccHHHHHHH-------cCCCCce
Q psy3301 470 ILVRD------EQLPVLLPVD-VDC---DKYFSTSKIPVMLVAGKSDMPRARQ-DYLMQPDIFCET-------HKLSPAH 531 (608)
Q Consensus 470 ~~~~~------v~d~~l~~~~-~~~---~~~~~~~~~p~ilVgnK~DL~~~~~-~~~~~~~~~~~~-------~~~~~~~ 531 (608)
.+++. ||| .++.. ... -+.....++|+++|+||+|+...+. ....+..++.+. ++++ .+
T Consensus 84 ~~~~~~d~~ilV~d--~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-iv 160 (194)
T cd01891 84 RVLSMVDGVLLLVD--ASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP-VL 160 (194)
T ss_pred HHHHhcCEEEEEEE--CCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC-EE
Confidence 77666 677 44421 111 1222235789999999999964332 223444555433 2443 67
Q ss_pred EEc--cCCC----------HHHHHHHHHHHH
Q psy3301 532 SFS--AANN----------DREVFVKLATMA 550 (608)
Q Consensus 532 ~~S--~~~~----------v~e~F~~l~~~a 550 (608)
++| +|.| +.++...|.+.+
T Consensus 161 ~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~~ 191 (194)
T cd01891 161 YASAKNGWASLNLEDPSEDLEPLFDTIIEHV 191 (194)
T ss_pred EeehhccccccccccchhhHHHHHHHHHhcC
Confidence 788 5544 456666665544
No 429
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.00 E-value=1e-09 Score=117.44 Aligned_cols=135 Identities=16% Similarity=0.171 Sum_probs=84.5
Q ss_pred ceEEEEEEccCCCchHHHHHHHhcCCC--CCCCCCCCCCCcCCCceEecc-----eEeCCcceeEeeee--------ccc
Q psy3301 408 NVYVCHVIGNRSTGKTALCQSILRKHH--DSSKTSITSPVECDPPYTINT-----TTVYGQEKYLVLKE--------ILV 472 (608)
Q Consensus 408 ~~~k~~viG~~gvGKTsll~~f~~~~~--~~~~~~t~~~~~~~~~~~i~~-----~~v~Gqe~~~~l~~--------~~~ 472 (608)
..+|++++|++|||||||++++++... ...+. ..+.+.+...+.+++ ++.+|+..+....+ .++
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~p-gtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~ 280 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIK-GTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAI 280 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCC-CcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHH
Confidence 447999999999999999999998754 23332 112212223344444 33488765432211 122
Q ss_pred cc------ccccCCCCccc--ccc-cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc-cCCCHHHH
Q psy3301 473 RD------EQLPVLLPVDV--DCD-KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS-AANNDREV 542 (608)
Q Consensus 473 ~~------v~d~~l~~~~~--~~~-~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S-~~~~v~e~ 542 (608)
+. ||| .++... ... ......+.|+++|+||+|+... +..++++.++++ ++++| ...||+++
T Consensus 281 ~~aD~il~V~D--~s~~~s~~~~~l~~~~~~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~-~~~vSak~~gI~~~ 351 (442)
T TIGR00450 281 KQADLVIYVLD--ASQPLTKDDFLIIDLNKSKKPFILVLNKIDLKIN------SLEFFVSSKVLN-SSNLSAKQLKIKAL 351 (442)
T ss_pred hhCCEEEEEEE--CCCCCChhHHHHHHHhhCCCCEEEEEECccCCCc------chhhhhhhcCCc-eEEEEEecCCHHHH
Confidence 22 677 554331 111 1122357899999999999642 345677777775 78888 44799999
Q ss_pred HHHHHHHHcC
Q psy3301 543 FVKLATMAAF 552 (608)
Q Consensus 543 F~~l~~~a~~ 552 (608)
|..|.+.+..
T Consensus 352 ~~~L~~~i~~ 361 (442)
T TIGR00450 352 VDLLTQKINA 361 (442)
T ss_pred HHHHHHHHHH
Confidence 9999987643
No 430
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.00 E-value=6.3e-10 Score=115.69 Aligned_cols=134 Identities=14% Similarity=0.108 Sum_probs=76.5
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEe------cceEeCCc---------ceeEeeeecc
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTI------NTTTVYGQ---------EKYLVLKEIL 471 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i------~~~~v~Gq---------e~~~~l~~~~ 471 (608)
...++|+++|.+|||||||++++++..+.....+..+.+.....+.+ .-++.+|. +.|....+..
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~ 266 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLEEV 266 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHHHHH
Confidence 35689999999999999999999998643221111111000111222 22333675 2222111111
Q ss_pred c-cc----ccccCCCCcc--cccc------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cC
Q psy3301 472 V-RD----EQLPVLLPVD--VDCD------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AA 536 (608)
Q Consensus 472 ~-~~----v~d~~l~~~~--~~~~------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~ 536 (608)
. .+ |+| .++.. +.+. +.....+.|+++|+||+|+.....+ ..+. . +.++++++| ++
T Consensus 267 ~~ADlil~VvD--~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v-----~~~~-~-~~~~~i~iSAktg 337 (351)
T TIGR03156 267 READLLLHVVD--ASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRI-----ERLE-E-GYPEAVFVSAKTG 337 (351)
T ss_pred HhCCEEEEEEE--CCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhH-----HHHH-h-CCCCEEEEEccCC
Confidence 1 11 677 55543 2221 2223357899999999999653322 1121 1 223478899 89
Q ss_pred CCHHHHHHHHHHH
Q psy3301 537 NNDREVFVKLATM 549 (608)
Q Consensus 537 ~~v~e~F~~l~~~ 549 (608)
.|+++++..|...
T Consensus 338 ~GI~eL~~~I~~~ 350 (351)
T TIGR03156 338 EGLDLLLEAIAER 350 (351)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999998764
No 431
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.99 E-value=1.9e-09 Score=122.81 Aligned_cols=115 Identities=17% Similarity=0.052 Sum_probs=79.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCC-----------cCCCC--CcceEec-------CccCCCceeEEEEeCCCCC
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPE-----------LVPSK--AEEITIP-------PDVTPEMVPTHIVDYSEVD 68 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~-----------~~~~~--~~~~~i~-------~~~~~~~~~~~i~Dt~G~~ 68 (608)
...+|+++|+.++|||||+++|+...-.. ...+. ....++. ..+.+.++.+++|||||+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 45799999999999999999998531110 00000 0011221 1245567899999999999
Q ss_pred CChHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCC
Q psy3301 69 QTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVD 129 (608)
Q Consensus 69 ~~~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 129 (608)
+|.......++.+|++++|+|+.+....+... .|.. .. ..++|+++|+||+|...
T Consensus 98 ~f~~~~~~al~~aD~~llVvda~~g~~~~t~~-~~~~-~~----~~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 98 DFGGDVTRAMRAVDGAIVVVCAVEGVMPQTET-VLRQ-AL----KENVKPVLFINKVDRLI 152 (720)
T ss_pred ccHHHHHHHHHhcCEEEEEEecCCCCCccHHH-HHHH-HH----HcCCCEEEEEEChhccc
Confidence 99888899999999999999998753333222 3332 21 24678899999999754
No 432
>PRK15494 era GTPase Era; Provisional
Probab=98.99 E-value=1e-09 Score=113.84 Aligned_cols=138 Identities=16% Similarity=0.116 Sum_probs=82.6
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCC--CcCCCce-----EecceEeCCcc-eeEeeeecccc-----
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSP--VECDPPY-----TINTTTVYGQE-KYLVLKEILVR----- 473 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~--~~~~~~~-----~i~~~~v~Gqe-~~~~l~~~~~~----- 473 (608)
.+.++|+++|++|||||||+++|++..+.... +.++. +.....+ .+.-++.+|+. .+..+.....+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs-~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~ 128 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVT-PKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSS 128 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeecc-CCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHH
Confidence 35589999999999999999999998875322 12221 1111112 23334558873 34433332111
Q ss_pred --c------ccccCCCCcccccc----cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcC-CCCceEEc--cCCC
Q psy3301 474 --D------EQLPVLLPVDVDCD----KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHK-LSPAHSFS--AANN 538 (608)
Q Consensus 474 --~------v~d~~l~~~~~~~~----~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~-~~~~~~~S--~~~~ 538 (608)
+ ++| ....-...+ +.....+.|+++|+||+|+... ...+..+++++.+ ..+.+++| ++.|
T Consensus 129 l~~aDvil~VvD--~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAktg~g 203 (339)
T PRK15494 129 LHSADLVLLIID--SLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISALSGKN 203 (339)
T ss_pred hhhCCEEEEEEE--CCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEeccCccC
Confidence 1 333 111101111 2222345788899999999643 1345566666554 23478899 8999
Q ss_pred HHHHHHHHHHHH
Q psy3301 539 DREVFVKLATMA 550 (608)
Q Consensus 539 v~e~F~~l~~~a 550 (608)
++++|..|+..+
T Consensus 204 v~eL~~~L~~~l 215 (339)
T PRK15494 204 IDGLLEYITSKA 215 (339)
T ss_pred HHHHHHHHHHhC
Confidence 999999999876
No 433
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.97 E-value=1.2e-09 Score=100.14 Aligned_cols=129 Identities=14% Similarity=0.138 Sum_probs=76.9
Q ss_pred EEEccCCCchHHHHHHHhcCCC--CCCCCCCCCCCcCCCc-----eEecceEeCCcceeEe-----eee---ccccc---
Q psy3301 413 HVIGNRSTGKTALCQSILRKHH--DSSKTSITSPVECDPP-----YTINTTTVYGQEKYLV-----LKE---ILVRD--- 474 (608)
Q Consensus 413 ~viG~~gvGKTsll~~f~~~~~--~~~~~~t~~~~~~~~~-----~~i~~~~v~Gqe~~~~-----l~~---~~~~~--- 474 (608)
+++|.+|||||||++++++... ...+.++ +.+..... +.+.-++.+|.+.+.. ++. ...+.
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ 79 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGV-TRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADV 79 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCc-eeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCE
Confidence 4799999999999999998752 2222211 11011111 2233445588766543 111 11111
Q ss_pred ---ccccCCCCcc----cccccccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHHH
Q psy3301 475 ---EQLPVLLPVD----VDCDKYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFVK 545 (608)
Q Consensus 475 ---v~d~~l~~~~----~~~~~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~~ 545 (608)
++| ..... ..+.++....+.|+++|+||+|+.+..+. .+...++++.+++++| ++.|++++|..
T Consensus 80 ii~v~d--~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 152 (157)
T cd01894 80 ILFVVD--GREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDLLDA 152 (157)
T ss_pred EEEEEe--ccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHHHHH
Confidence 444 22211 11223333456999999999999864433 3334556775688999 89999999999
Q ss_pred HHHH
Q psy3301 546 LATM 549 (608)
Q Consensus 546 l~~~ 549 (608)
|++.
T Consensus 153 l~~~ 156 (157)
T cd01894 153 ILEL 156 (157)
T ss_pred HHhh
Confidence 9864
No 434
>KOG0044|consensus
Probab=98.96 E-value=8.2e-10 Score=102.90 Aligned_cols=138 Identities=20% Similarity=0.236 Sum_probs=101.0
Q ss_pred ChHHHHHHHHHHHHhccCCC-CCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHH
Q psy3301 169 LTPECIKALTRIFKVCDLDN-DNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLF 247 (608)
Q Consensus 169 l~~~~~~~L~~~f~~~D~d~-dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~ 247 (608)
.++..+..+.+-| -.+. .|.++.+++..+....|...-+..=.+.+.+.++.+ ++|.|+|.+|+..+...
T Consensus 23 f~~~ei~~~Yr~F---k~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~------~dg~i~F~Efi~als~~ 93 (193)
T KOG0044|consen 23 FSKKEIQQWYRGF---KNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKN------KDGTIDFLEFICALSLT 93 (193)
T ss_pred CCHHHHHHHHHHh---cccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhccc------CCCCcCHHHHHHHHHHH
Confidence 3444444444444 4443 799999999999998665444455567888888888 89999999999776554
Q ss_pred HhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccC--
Q psy3301 248 MQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLC-- 325 (608)
Q Consensus 248 ~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~-- 325 (608)
.+ |.. .++|+++|++||.|+||+|+..|+-+++..+
T Consensus 94 ~r-Gt~-----------------------------------------eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~ 131 (193)
T KOG0044|consen 94 SR-GTL-----------------------------------------EEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQ 131 (193)
T ss_pred cC-CcH-----------------------------------------HHHhhhhheeecCCCCceEcHHHHHHHHHHHHH
Confidence 32 222 3678888999999999999999998877653
Q ss_pred --CCCCCC-------CCccccccceecCCCCccchhhHHhH
Q psy3301 326 --PPECPP-------WTDREMRAMVATNSKGWITMQGFLCY 357 (608)
Q Consensus 326 --~~~~~~-------~~~~~~~~~~d~~~~g~i~~~ef~~~ 357 (608)
|....| .-++.+++.+|.|.||.||+++|+..
T Consensus 132 m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~ 172 (193)
T KOG0044|consen 132 MTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEG 172 (193)
T ss_pred HcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHH
Confidence 311111 11467889999999999999999875
No 435
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.96 E-value=7.8e-09 Score=102.17 Aligned_cols=124 Identities=17% Similarity=0.093 Sum_probs=75.8
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHHcCCCCCc--CCCCCcceEecCccCCCceeEEEEeCCCCCCChH---H-------
Q psy3301 6 SLRRNVRILLLGDRHVGKTSLILSLVSEEFPEL--VPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVD---E------- 73 (608)
Q Consensus 6 ~~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~---~------- 73 (608)
.....++|+|+|.+|||||||+|+|++...... ..+.+.. .........+..+.+|||||...... .
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~-~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~ 105 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLR-VREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSS 105 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEE-EEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHH
Confidence 455679999999999999999999999875432 2222211 11222334567899999999765521 1
Q ss_pred HHHHHH--hcCcEEEEEEcCCh-hhHHHHHHhHHHHHhhh-ccCCCCcEEEEEeCcCCCCCCC
Q psy3301 74 LTEEIQ--KAHVICLVYSVVDD-ASIDRLSSHWLPFLRNC-LVDTCLPIVLVGNKVDLVDYST 132 (608)
Q Consensus 74 ~~~~~~--~ad~iilV~d~~~~-~s~~~~~~~~~~~i~~~-~~~~~~piilv~nK~Dl~~~~~ 132 (608)
+..++. ..|++++|..++.. .+... ...+..+... ....-.++++|.||+|...+..
T Consensus 106 I~~~l~~~~idvIL~V~rlD~~r~~~~d--~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~ 166 (249)
T cd01853 106 IKRYLKKKTPDVVLYVDRLDMYRRDYLD--LPLLRAITDSFGPSIWRNAIVVLTHAASSPPDG 166 (249)
T ss_pred HHHHHhccCCCEEEEEEcCCCCCCCHHH--HHHHHHHHHHhChhhHhCEEEEEeCCccCCCCC
Confidence 122332 57888888766543 22221 1233333321 1111247999999999865543
No 436
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.96 E-value=1.4e-09 Score=117.10 Aligned_cols=133 Identities=14% Similarity=0.085 Sum_probs=81.3
Q ss_pred ceEEEEEEccCCCchHHHHHHHhcCCCCCCCC-CCCCCCcCCCceEecc-----eEeCCcceeEeeeec--------ccc
Q psy3301 408 NVYVCHVIGNRSTGKTALCQSILRKHHDSSKT-SITSPVECDPPYTINT-----TTVYGQEKYLVLKEI--------LVR 473 (608)
Q Consensus 408 ~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~-~t~~~~~~~~~~~i~~-----~~v~Gqe~~~~l~~~--------~~~ 473 (608)
.-++|+++|.+|||||||++++++........ +..+.+.....+.+++ ++.+|.+.+..+.+. +++
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~ 293 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIE 293 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHH
Confidence 44899999999999999999999976422211 1111111112233333 344887654432111 112
Q ss_pred c------ccccCCCCcc--cccccccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHH
Q psy3301 474 D------EQLPVLLPVD--VDCDKYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVF 543 (608)
Q Consensus 474 ~------v~d~~l~~~~--~~~~~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F 543 (608)
. ||| .++.. +....+....+.|+++|+||+||....... ...+ .+++++| ++.|+++++
T Consensus 294 ~aD~il~VvD--~s~~~s~~~~~~l~~~~~~piiiV~NK~DL~~~~~~~--------~~~~-~~~i~iSAktg~GI~~L~ 362 (449)
T PRK05291 294 EADLVLLVLD--ASEPLTEEDDEILEELKDKPVIVVLNKADLTGEIDLE--------EENG-KPVIRISAKTGEGIDELR 362 (449)
T ss_pred hCCEEEEEec--CCCCCChhHHHHHHhcCCCCcEEEEEhhhccccchhh--------hccC-CceEEEEeeCCCCHHHHH
Confidence 2 677 55433 212222224678999999999997543321 2223 3478899 899999999
Q ss_pred HHHHHHHc
Q psy3301 544 VKLATMAA 551 (608)
Q Consensus 544 ~~l~~~a~ 551 (608)
..|.+.+.
T Consensus 363 ~~L~~~l~ 370 (449)
T PRK05291 363 EAIKELAF 370 (449)
T ss_pred HHHHHHHh
Confidence 99998773
No 437
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.93 E-value=1.1e-08 Score=102.49 Aligned_cols=122 Identities=16% Similarity=0.149 Sum_probs=73.1
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHHcCCCCCc--CCCCCcceEecCccCCCceeEEEEeCCCCCCChHH---HHHHHH-
Q psy3301 6 SLRRNVRILLLGDRHVGKTSLILSLVSEEFPEL--VPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDE---LTEEIQ- 79 (608)
Q Consensus 6 ~~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~---~~~~~~- 79 (608)
...+.++|+|+|.+||||||++|+|++...... .++... ..........+..+.++||||....... ....++
T Consensus 34 ~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~-~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~ 112 (313)
T TIGR00991 34 EDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGL-RPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKR 112 (313)
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcce-eEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHH
Confidence 345678999999999999999999998874321 222111 1111122345788999999997654222 122222
Q ss_pred -----hcCcEEEEEEcCChhhHHHHHHhHHHHHhhh-ccCCCCcEEEEEeCcCCCC
Q psy3301 80 -----KAHVICLVYSVVDDASIDRLSSHWLPFLRNC-LVDTCLPIVLVGNKVDLVD 129 (608)
Q Consensus 80 -----~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~-~~~~~~piilv~nK~Dl~~ 129 (608)
..|++|+|..++.. .+.......+..+... ....-.++|||.|++|...
T Consensus 113 ~l~~~g~DvVLyV~rLD~~-R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 113 FLLGKTIDVLLYVDRLDAY-RVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP 167 (313)
T ss_pred HhhcCCCCEEEEEeccCcc-cCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence 58999999665432 1111111233333321 1122347999999999764
No 438
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.92 E-value=1.1e-09 Score=121.43 Aligned_cols=132 Identities=11% Similarity=0.055 Sum_probs=85.7
Q ss_pred ccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCce-----EecceEeCCcceeEeee------ecccc----c----cc
Q psy3301 416 GNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPY-----TINTTTVYGQEKYLVLK------EILVR----D----EQ 476 (608)
Q Consensus 416 G~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~-----~i~~~~v~Gqe~~~~l~------~~~~~----~----v~ 476 (608)
|++|||||||++++.+..+.....+..+.+.....+ .++-++.+|++.+.... +.+.. + ++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv 80 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV 80 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence 899999999999999987643332222221111122 23445669988876441 11111 1 44
Q ss_pred ccCCCCcccccc--cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHHHHHHHHc
Q psy3301 477 LPVLLPVDVDCD--KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFVKLATMAA 551 (608)
Q Consensus 477 d~~l~~~~~~~~--~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~~l~~~a~ 551 (608)
| .++.+.... ......++|+++|+||+|+.+++.+. .+.++++++++++ .+++| ++.|++++|+.+++.+.
T Consensus 81 D--at~ler~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~p-vv~tSA~tg~Gi~eL~~~i~~~~~ 155 (591)
T TIGR00437 81 D--ASNLERNLYLTLQLLELGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVP-VVPTSATEGRGIERLKDAIRKAIG 155 (591)
T ss_pred c--CCcchhhHHHHHHHHhcCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCC-EEEEECCCCCCHHHHHHHHHHHhh
Confidence 5 333221111 12224679999999999997655543 4578999999986 88999 89999999999998753
No 439
>KOG0070|consensus
Probab=98.92 E-value=3e-09 Score=96.62 Aligned_cols=136 Identities=13% Similarity=0.082 Sum_probs=96.9
Q ss_pred CCceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCC-CceEecceEe-----CCcceeEeeeeccccc-----
Q psy3301 406 TRNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECD-PPYTINTTTV-----YGQEKYLVLKEILVRD----- 474 (608)
Q Consensus 406 ~r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~-~~~~i~~~~v-----~Gqe~~~~l~~~~~~~----- 474 (608)
....++|+++|--++||||++.++-.+++... .||++- . ..+.++++.+ .||++++.+|..|+.+
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGf---nVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI 89 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGF---NVETVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLI 89 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCcccc---ceeEEEEcceEEEEEecCCCcccccchhhhccCCcEEE
Confidence 34558999999999999999999988887665 456665 3 4455555543 8999999999999998
Q ss_pred -ccccCCCCcc---c---ccc---cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCC----CceEEc-----c
Q psy3301 475 -EQLPVLLPVD---V---DCD---KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLS----PAHSFS-----A 535 (608)
Q Consensus 475 -v~d~~l~~~~---~---~~~---~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~----~~~~~S-----~ 535 (608)
|.| -++++ + .+. ......++|+++.|||-|++.. ..+.++.+.+++. .++++. +
T Consensus 90 fVvD--S~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~a-----ls~~ei~~~L~l~~l~~~~w~iq~~~a~~ 162 (181)
T KOG0070|consen 90 FVVD--SSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGA-----LSAAEITNKLGLHSLRSRNWHIQSTCAIS 162 (181)
T ss_pred EEEe--CCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcccc-----CCHHHHHhHhhhhccCCCCcEEeeccccc
Confidence 445 34433 1 111 2222468999999999999863 3356666665543 123333 7
Q ss_pred CCCHHHHHHHHHHHHcC
Q psy3301 536 ANNDREVFVKLATMAAF 552 (608)
Q Consensus 536 ~~~v~e~F~~l~~~a~~ 552 (608)
|+++.|.++++..++..
T Consensus 163 G~GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 163 GEGLYEGLDWLSNNLKK 179 (181)
T ss_pred cccHHHHHHHHHHHHhc
Confidence 99999999999988743
No 440
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.92 E-value=4.8e-09 Score=105.79 Aligned_cols=137 Identities=12% Similarity=0.026 Sum_probs=82.6
Q ss_pred EEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCC------CceEecceEeCCccee-Eeeee-------ccccc--
Q psy3301 411 VCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECD------PPYTINTTTVYGQEKY-LVLKE-------ILVRD-- 474 (608)
Q Consensus 411 k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~------~~~~i~~~~v~Gqe~~-~~l~~-------~~~~~-- 474 (608)
+++|+|.+|||||||++++++..+........+++... ....+.-++++|.... ..+.+ .+..+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 58999999999999999999987654332111111100 0112233455775432 11111 01111
Q ss_pred ----ccccCCCCcc-c--ccccccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHHH
Q psy3301 475 ----EQLPVLLPVD-V--DCDKYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFVK 545 (608)
Q Consensus 475 ----v~d~~l~~~~-~--~~~~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~~ 545 (608)
++| .+... . .+.......+.|+++|+||+|+.+.... .....+++...+..+++++| ++.|+++++..
T Consensus 82 vvl~VvD--~~~~~~~~~~i~~~l~~~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~ 158 (270)
T TIGR00436 82 LILFVVD--SDQWNGDGEFVLTKLQNLKRPVVLTRNKLDNKFKDKL-LPLIDKYAILEDFKDIVPISALTGDNTSFLAAF 158 (270)
T ss_pred EEEEEEE--CCCCCchHHHHHHHHHhcCCCEEEEEECeeCCCHHHH-HHHHHHHHhhcCCCceEEEecCCCCCHHHHHHH
Confidence 455 43332 1 1112223467999999999999743332 34556676666665689999 89999999999
Q ss_pred HHHHH
Q psy3301 546 LATMA 550 (608)
Q Consensus 546 l~~~a 550 (608)
|.+.+
T Consensus 159 l~~~l 163 (270)
T TIGR00436 159 IEVHL 163 (270)
T ss_pred HHHhC
Confidence 98865
No 441
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=3.6e-09 Score=107.56 Aligned_cols=131 Identities=18% Similarity=0.244 Sum_probs=90.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCCc------------------------CCCCC----cceEe---cCccCCC
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPEL------------------------VPSKA----EEITI---PPDVTPE 55 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~------------------------~~~~~----~~~~i---~~~~~~~ 55 (608)
.+..++++++|+..+|||||+-+|+.+.-..+ ...+. .-.|+ ...+..+
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 46689999999999999999999986532211 00000 01122 1123445
Q ss_pred ceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEcCChh----------hHHHHHHhHHHHHhhhccCCCCcEEEEEeCc
Q psy3301 56 MVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSVVDDA----------SIDRLSSHWLPFLRNCLVDTCLPIVLVGNKV 125 (608)
Q Consensus 56 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~~~~----------s~~~~~~~~~~~i~~~~~~~~~piilv~nK~ 125 (608)
...+.|+|+||+..|...+.....+||++|+|+|+.+.+ +.+++. +.+ ..+ -..+|++.||+
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~-----La~--tlG-i~~lIVavNKM 155 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAF-----LAR--TLG-IKQLIVAVNKM 155 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHH-----HHH--hcC-CceEEEEEEcc
Confidence 677999999999999998989999999999999998762 333321 111 111 23688999999
Q ss_pred CCCCCCC--------------------------cccCcccCcCHHH
Q psy3301 126 DLVDYST--------------------------VESSAKTLKNISE 145 (608)
Q Consensus 126 Dl~~~~~--------------------------~e~SAk~~~~i~~ 145 (608)
|+.+.+. ++|||.+|.|+.+
T Consensus 156 D~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 156 DLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred cccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 9987543 6777777777644
No 442
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.90 E-value=1.8e-09 Score=102.47 Aligned_cols=138 Identities=14% Similarity=0.075 Sum_probs=83.7
Q ss_pred EEEEEccCCCchHHHHHHHhcCCCCCCCCCCCC--------------CC-cCC------CceEecceEeCCcceeEeeee
Q psy3301 411 VCHVIGNRSTGKTALCQSILRKHHDSSKTSITS--------------PV-ECD------PPYTINTTTVYGQEKYLVLKE 469 (608)
Q Consensus 411 k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~--------------~~-~~~------~~~~i~~~~v~Gqe~~~~l~~ 469 (608)
+|+|+|.+|+|||||++++++......+..+.. .. ... ....+.-++.+|+..|...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 489999999999999999999877654422111 00 000 112334455588777665554
Q ss_pred ccccc------ccccCCCCcccc----cccccCCCCCcEEEEEeCCCCCcch--hcccccHHHHHHHcC-----------
Q psy3301 470 ILVRD------EQLPVLLPVDVD----CDKYFSTSKIPVMLVAGKSDMPRAR--QDYLMQPDIFCETHK----------- 526 (608)
Q Consensus 470 ~~~~~------v~d~~l~~~~~~----~~~~~~~~~~p~ilVgnK~DL~~~~--~~~~~~~~~~~~~~~----------- 526 (608)
.+.+. ++| ....... .-......+.|+++|+||+|+.... .....+..+..+.++
T Consensus 81 ~~~~~~d~~i~v~d--~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (189)
T cd00881 81 RGLSVSDGAILVVD--ANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRN 158 (189)
T ss_pred HHHHhcCEEEEEEE--CCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhccc
Confidence 44443 455 3322110 0022223689999999999997421 122233444444433
Q ss_pred --CCCceEEc--cCCCHHHHHHHHHHHH
Q psy3301 527 --LSPAHSFS--AANNDREVFVKLATMA 550 (608)
Q Consensus 527 --~~~~~~~S--~~~~v~e~F~~l~~~a 550 (608)
..+.+++| .+.|++++|..|.+.+
T Consensus 159 ~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 159 GLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred CCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 24467888 8999999999999876
No 443
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.90 E-value=2.3e-09 Score=90.29 Aligned_cols=121 Identities=24% Similarity=0.235 Sum_probs=85.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCC----CCChHHHHHHHHhcCcEEEE
Q psy3301 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEV----DQTVDELTEEIQKAHVICLV 87 (608)
Q Consensus 12 kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~----~~~~~~~~~~~~~ad~iilV 87 (608)
||+++|..|+|||||.++|.+...-.. . +-.+++... -.+||||- ..+...+.....++|++++|
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~lyk--K-----TQAve~~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v 71 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLYK--K-----TQAVEFNDK----GDIDTPGEYFEHPRWYHALITTLQDADVIIYV 71 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhhc--c-----cceeeccCc----cccCCchhhhhhhHHHHHHHHHhhccceeeee
Confidence 799999999999999999998764321 1 111122111 25789982 22222234456789999999
Q ss_pred EEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC----------------cccCcccCcCHHHHHHHHH
Q psy3301 88 YSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST----------------VESSAKTLKNISEMFYYAQ 151 (608)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------------~e~SAk~~~~i~~lf~~l~ 151 (608)
-++++++| .+-+.+. .....|+|-|.+|.||.++.. +++|+.++.|+++++.++.
T Consensus 72 ~~and~~s------~f~p~f~---~~~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~ 142 (148)
T COG4917 72 HAANDPES------RFPPGFL---DIGVKKVIGVVTKADLAEDADISLVKRWLREAGAEPIFETSAVDNQGVEELVDYLA 142 (148)
T ss_pred ecccCccc------cCCcccc---cccccceEEEEecccccchHhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHHHH
Confidence 99999876 2223332 223457999999999996543 9999999999999998875
Q ss_pred H
Q psy3301 152 K 152 (608)
Q Consensus 152 ~ 152 (608)
.
T Consensus 143 ~ 143 (148)
T COG4917 143 S 143 (148)
T ss_pred h
Confidence 4
No 444
>KOG1532|consensus
Probab=98.90 E-value=7.8e-09 Score=98.92 Aligned_cols=144 Identities=22% Similarity=0.256 Sum_probs=88.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCC-------cCCCCCcceEecCcc---------------------------
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPE-------LVPSKAEEITIPPDV--------------------------- 52 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~-------~~~~~~~~~~i~~~~--------------------------- 52 (608)
.++.+-|+|+|-.|+|||||++||..--... |..|.......+.++
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsL 95 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSL 95 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhH
Confidence 4567889999999999999999997543222 222211111111111
Q ss_pred ----------------CCCceeEEEEeCCCCCCC------hHHHHHHHHhc--CcEEEEEEcCC---hhhHHHHHHhHHH
Q psy3301 53 ----------------TPEMVPTHIVDYSEVDQT------VDELTEEIQKA--HVICLVYSVVD---DASIDRLSSHWLP 105 (608)
Q Consensus 53 ----------------~~~~~~~~i~Dt~G~~~~------~~~~~~~~~~a--d~iilV~d~~~---~~s~~~~~~~~~~ 105 (608)
-.+.....|+|||||-+- ..++...+... -++++|.|... +.+|-.-..+--.
T Consensus 96 NLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcS 175 (366)
T KOG1532|consen 96 NLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACS 175 (366)
T ss_pred HHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHH
Confidence 112346899999997432 12233444443 44555555432 2333221111111
Q ss_pred HHhhhccCCCCcEEEEEeCcCCCCCCC-------------------------------------------cccCcccCcC
Q psy3301 106 FLRNCLVDTCLPIVLVGNKVDLVDYST-------------------------------------------VESSAKTLKN 142 (608)
Q Consensus 106 ~i~~~~~~~~~piilv~nK~Dl~~~~~-------------------------------------------~e~SAk~~~~ 142 (608)
. ....++|.|+|.||+|+....- +.|||.+|.|
T Consensus 176 i----lyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G 251 (366)
T KOG1532|consen 176 I----LYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEG 251 (366)
T ss_pred H----HHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCc
Confidence 1 3456899999999999986532 7899999999
Q ss_pred HHHHHHHHHHHH
Q psy3301 143 ISEMFYYAQKAV 154 (608)
Q Consensus 143 i~~lf~~l~~~i 154 (608)
.+++|..+-..+
T Consensus 252 ~ddf~~av~~~v 263 (366)
T KOG1532|consen 252 FDDFFTAVDESV 263 (366)
T ss_pred HHHHHHHHHHHH
Confidence 999999887776
No 445
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.89 E-value=4.4e-09 Score=93.29 Aligned_cols=127 Identities=20% Similarity=0.136 Sum_probs=80.2
Q ss_pred EEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecceEeCCcc-----eeEeeeeccccc-----ccccCC
Q psy3301 411 VCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINTTTVYGQE-----KYLVLKEILVRD-----EQLPVL 480 (608)
Q Consensus 411 k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~~~v~Gqe-----~~~~l~~~~~~~-----v~d~~l 480 (608)
|+.+||+.|||||||++++.+.+..... |-. ..|.-+.++.+|.- -|..|....... +.| .
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~~K--Tq~-----i~~~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~d--a 73 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRYKK--TQA-----IEYYDNTIDTPGEYIENPRFYHALIVTAQDADVVLLLQD--A 73 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCcCc--cce-----eEecccEEECChhheeCHHHHHHHHHHHhhCCEEEEEec--C
Confidence 7999999999999999999987664322 221 22333456666621 122222111111 122 1
Q ss_pred CCcccccc-cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHHHHH
Q psy3301 481 LPVDVDCD-KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFVKLA 547 (608)
Q Consensus 481 ~~~~~~~~-~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~~l~ 547 (608)
++....-. .+...-+.|+|=|.||+|+.... ...+.++++.+..|+..+|++| +++|++++...|-
T Consensus 74 t~~~~~~pP~fa~~f~~pvIGVITK~Dl~~~~-~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 74 TEPRSVFPPGFASMFNKPVIGVITKIDLPSDD-ANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred CCCCccCCchhhcccCCCEEEEEECccCccch-hhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence 11110000 11223468999999999998322 2346788999999999999999 8999999998763
No 446
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.88 E-value=1.1e-09 Score=89.52 Aligned_cols=69 Identities=16% Similarity=0.096 Sum_probs=58.9
Q ss_pred hHHHHHHHHHhhhcC-CCCCCCCHHHHHHhhcc-CCCCCCC-CCccccccceecCCCCccchhhHHhHhhhh
Q psy3301 293 KGQQFLTTLFYRFDK-DGDGALSPEEQARLFSL-CPPECPP-WTDREMRAMVATNSKGWITMQGFLCYWILT 361 (608)
Q Consensus 293 ~~~~~l~~~F~~fD~-d~dG~ls~~El~~~~~~-~~~~~~~-~~~~~~~~~~d~~~~g~i~~~ef~~~w~~~ 361 (608)
....-|+.+|+.||+ |++|+|+.+||+.+++. +|..... .+++++++.+|.|+||.|+|+||+.+..-.
T Consensus 5 ~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 5 KAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 346789999999999 99999999999999999 8744444 568899999999999999999997665443
No 447
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=98.88 E-value=5.5e-09 Score=107.74 Aligned_cols=142 Identities=15% Similarity=0.141 Sum_probs=83.6
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCC-CCCCC-CCCC----CcCCCceEecceEeCCc----ceeEeeeeccccc--
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHD-SSKTS-ITSP----VECDPPYTINTTTVYGQ----EKYLVLKEILVRD-- 474 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~-~~~~~-t~~~----~~~~~~~~i~~~~v~Gq----e~~~~l~~~~~~~-- 474 (608)
+.+-.|.+||.+|||||||++++.+.... ..|+- |... ..+.....+.-.+++|. .....|...+.+.
T Consensus 156 k~~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie 235 (335)
T PRK12299 156 KLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIE 235 (335)
T ss_pred cccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhh
Confidence 34568999999999999999999975422 12221 1111 00111111222344553 2222222221111
Q ss_pred -------ccccCCCCcc--cccc-------cccC-CCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--c
Q psy3301 475 -------EQLPVLLPVD--VDCD-------KYFS-TSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--A 535 (608)
Q Consensus 475 -------v~d~~l~~~~--~~~~-------~~~~-~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~ 535 (608)
|+| +++.+ +... .+.. ..+.|+++|+||+|+.+.......+.+.++++.+.+ ++++| +
T Consensus 236 ~a~vlI~ViD--~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~-i~~iSAkt 312 (335)
T PRK12299 236 RTRLLLHLVD--IEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGP-VFLISAVT 312 (335)
T ss_pred hcCEEEEEEc--CCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCC-EEEEEcCC
Confidence 677 66543 1111 2211 147899999999999765544444556666666654 88899 8
Q ss_pred CCCHHHHHHHHHHHHc
Q psy3301 536 ANNDREVFVKLATMAA 551 (608)
Q Consensus 536 ~~~v~e~F~~l~~~a~ 551 (608)
+.|++++|..|++.+.
T Consensus 313 g~GI~eL~~~L~~~l~ 328 (335)
T PRK12299 313 GEGLDELLRALWELLE 328 (335)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999998764
No 448
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.87 E-value=5.1e-09 Score=97.57 Aligned_cols=139 Identities=12% Similarity=0.100 Sum_probs=75.7
Q ss_pred eEEEEEEccCCCchHHHHHHHhcCCCCCCCC-CCCCCCcCCCceEec-----ceEeCCcceeEe----------eeec-c
Q psy3301 409 VYVCHVIGNRSTGKTALCQSILRKHHDSSKT-SITSPVECDPPYTIN-----TTTVYGQEKYLV----------LKEI-L 471 (608)
Q Consensus 409 ~~k~~viG~~gvGKTsll~~f~~~~~~~~~~-~t~~~~~~~~~~~i~-----~~~v~Gqe~~~~----------l~~~-~ 471 (608)
.++|+++|++|+|||||++++++..+..... +..+.......+..+ -++.+|...... +... .
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 4789999999999999999999976432222 111111111222222 234466533211 1100 0
Q ss_pred ccc------ccccCCCCccc----ccccccCCCCCcEEEEEeCCCCCcchhcc-cccHHHHHHHcC---CCCceEEc--c
Q psy3301 472 VRD------EQLPVLLPVDV----DCDKYFSTSKIPVMLVAGKSDMPRARQDY-LMQPDIFCETHK---LSPAHSFS--A 535 (608)
Q Consensus 472 ~~~------v~d~~l~~~~~----~~~~~~~~~~~p~ilVgnK~DL~~~~~~~-~~~~~~~~~~~~---~~~~~~~S--~ 535 (608)
.+. ++| ..+... .........+.|+++|+||+|+...+... ......+.+.++ ..+.+++| +
T Consensus 82 ~~~~d~vi~v~d--~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (174)
T cd01895 82 IERADVVLLVID--ATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALT 159 (174)
T ss_pred HhhcCeEEEEEe--CCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccC
Confidence 111 444 322211 11122223578999999999997543111 122233444433 23478888 8
Q ss_pred CCCHHHHHHHHHHH
Q psy3301 536 ANNDREVFVKLATM 549 (608)
Q Consensus 536 ~~~v~e~F~~l~~~ 549 (608)
+.|++++|..+.+.
T Consensus 160 ~~~i~~~~~~l~~~ 173 (174)
T cd01895 160 GQGVDKLFDAIDEV 173 (174)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999998763
No 449
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.87 E-value=1.2e-08 Score=94.07 Aligned_cols=139 Identities=17% Similarity=0.130 Sum_probs=79.5
Q ss_pred eEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcC------CCceEecceEeCCcceeEeeee--------ccccc
Q psy3301 409 VYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVEC------DPPYTINTTTVYGQEKYLVLKE--------ILVRD 474 (608)
Q Consensus 409 ~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~------~~~~~i~~~~v~Gqe~~~~l~~--------~~~~~ 474 (608)
..+|+++|.+|||||||++++++..+............. ...+.+.-++.+|......... .....
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 82 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD 82 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999998654322211111000 0111222334466432211110 00111
Q ss_pred ------ccccCCCCcc----cccccccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHH
Q psy3301 475 ------EQLPVLLPVD----VDCDKYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREV 542 (608)
Q Consensus 475 ------v~d~~l~~~~----~~~~~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~ 542 (608)
++| .+... ....+.....+.|+++|+||+|+....+........++...+..+.+.+| ++.+++++
T Consensus 83 ~d~i~~v~d--~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l 160 (168)
T cd04163 83 VDLVLFVVD--ASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENVDEL 160 (168)
T ss_pred CCEEEEEEE--CCCccCchHHHHHHHHHHhCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCChHHH
Confidence 344 33321 11112222346899999999999844444344556666666555578888 89999999
Q ss_pred HHHHHHH
Q psy3301 543 FVKLATM 549 (608)
Q Consensus 543 F~~l~~~ 549 (608)
|..|.+.
T Consensus 161 ~~~l~~~ 167 (168)
T cd04163 161 LEEIVKY 167 (168)
T ss_pred HHHHHhh
Confidence 9999764
No 450
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.86 E-value=3.1e-09 Score=95.94 Aligned_cols=131 Identities=21% Similarity=0.224 Sum_probs=78.6
Q ss_pred EEccCCCchHHHHHHHhcCCC-CCCCCCCCCCCcCCCc-------eEecceEeCCcceeEeeeeccccc------ccccC
Q psy3301 414 VIGNRSTGKTALCQSILRKHH-DSSKTSITSPVECDPP-------YTINTTTVYGQEKYLVLKEILVRD------EQLPV 479 (608)
Q Consensus 414 viG~~gvGKTsll~~f~~~~~-~~~~~~t~~~~~~~~~-------~~i~~~~v~Gqe~~~~l~~~~~~~------v~d~~ 479 (608)
|+|++|+|||||++++++... ...+.++. .+.+... ..+.-++++|+..+........+. ++|
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d-- 77 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYD-- 77 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEE--
Confidence 589999999999999999877 34443333 3111221 222333447766655443333332 566
Q ss_pred CCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHHHHH
Q psy3301 480 LLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFVKLA 547 (608)
Q Consensus 480 l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~~l~ 547 (608)
++... .... ......++|+++|+||+|+.....................+++++| .+.++.++|.+|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 78 VTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 55433 1111 2344678999999999998754433222212233333344488888 7899999999875
No 451
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.86 E-value=2.8e-08 Score=97.21 Aligned_cols=110 Identities=20% Similarity=0.243 Sum_probs=72.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEE
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICL 86 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iil 86 (608)
......|+|+|.+|+|||||++.+++..-...........++ ....+..+.++||||.- ......++.+|++++
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~i~i---~~~~~~~i~~vDtPg~~---~~~l~~ak~aDvVll 109 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPITV---VTGKKRRLTFIECPNDI---NAMIDIAKVADLVLL 109 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccccEEE---EecCCceEEEEeCCchH---HHHHHHHHhcCEEEE
Confidence 345688999999999999999999875322111111111222 22356778999999843 344566799999999
Q ss_pred EEEcCChhhHHHHHHhHHHHHhhhccCCCCcE-EEEEeCcCCC
Q psy3301 87 VYSVVDDASIDRLSSHWLPFLRNCLVDTCLPI-VLVGNKVDLV 128 (608)
Q Consensus 87 V~d~~~~~s~~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl~ 128 (608)
|+|++........ .+...+.. .+.|. ++|.||+|+.
T Consensus 110 viDa~~~~~~~~~--~i~~~l~~----~g~p~vi~VvnK~D~~ 146 (225)
T cd01882 110 LIDASFGFEMETF--EFLNILQV----HGFPRVMGVLTHLDLF 146 (225)
T ss_pred EEecCcCCCHHHH--HHHHHHHH----cCCCeEEEEEeccccC
Confidence 9999865443322 34444442 25674 5599999975
No 452
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.86 E-value=4.1e-09 Score=95.74 Aligned_cols=128 Identities=12% Similarity=0.097 Sum_probs=73.8
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCc----------eEecceEeCCcceeEee------eeccc-
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPP----------YTINTTTVYGQEKYLVL------KEILV- 472 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~----------~~i~~~~v~Gqe~~~~l------~~~~~- 472 (608)
++|.++|.||||||||.+++++...... ..++. ... ..+.-++++|.-..... ...+.
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~--n~pG~---Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~ 75 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVG--NWPGT---TVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLL 75 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEE--ESTTS---SSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceec--CCCCC---CeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHh
Confidence 5899999999999999999999874322 12333 111 12222333442111000 00000
Q ss_pred cc-------ccccCCCCcccccc--cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHH
Q psy3301 473 RD-------EQLPVLLPVDVDCD--KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDRE 541 (608)
Q Consensus 473 ~~-------v~d~~l~~~~~~~~--~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e 541 (608)
.+ +.| .+..+.+.. .+...-++|+|+|.||+|+...+.. ....+.+++.+|++ .+.+| ++.|+++
T Consensus 76 ~~~~D~ii~VvD--a~~l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~-~id~~~Ls~~Lg~p-vi~~sa~~~~g~~~ 151 (156)
T PF02421_consen 76 SEKPDLIIVVVD--ATNLERNLYLTLQLLELGIPVVVVLNKMDEAERKGI-EIDAEKLSERLGVP-VIPVSARTGEGIDE 151 (156)
T ss_dssp HTSSSEEEEEEE--GGGHHHHHHHHHHHHHTTSSEEEEEETHHHHHHTTE-EE-HHHHHHHHTS--EEEEBTTTTBTHHH
T ss_pred hcCCCEEEEECC--CCCHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCC-EECHHHHHHHhCCC-EEEEEeCCCcCHHH
Confidence 00 112 111110000 2223468999999999998765554 45689999999997 88899 8999999
Q ss_pred HHHHH
Q psy3301 542 VFVKL 546 (608)
Q Consensus 542 ~F~~l 546 (608)
++..|
T Consensus 152 L~~~I 156 (156)
T PF02421_consen 152 LKDAI 156 (156)
T ss_dssp HHHHH
T ss_pred HHhhC
Confidence 98865
No 453
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.84 E-value=7.9e-09 Score=94.65 Aligned_cols=131 Identities=14% Similarity=0.074 Sum_probs=75.7
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCCCCC-CCCCCCcCCC-----ceEecceEeCCcceeEeeee--------ccccc-
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDSSKT-SITSPVECDP-----PYTINTTTVYGQEKYLVLKE--------ILVRD- 474 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~~~~-~t~~~~~~~~-----~~~i~~~~v~Gqe~~~~l~~--------~~~~~- 474 (608)
++++++|++|+|||||++++++..+..... +..+...+.. ...+.-++.+|...+....+ .....
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA 81 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence 589999999999999999999887532211 1111100011 12233344477544321100 00011
Q ss_pred -----ccccCCCCcc--cccccccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHHH
Q psy3301 475 -----EQLPVLLPVD--VDCDKYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFVK 545 (608)
Q Consensus 475 -----v~d~~l~~~~--~~~~~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~~ 545 (608)
++| +++.. .....+....+.|+++|+||+|+...... ..... ..+.+++| ++.|+++++..
T Consensus 82 ~~~v~v~d--~~~~~~~~~~~~~~~~~~~~vi~v~nK~D~~~~~~~-------~~~~~-~~~~~~~Sa~~~~~v~~l~~~ 151 (157)
T cd04164 82 DLVLFVID--ASRGLDEEDLEILELPADKPIIVVLNKSDLLPDSEL-------LSLLA-GKPIIAISAKTGEGLDELKEA 151 (157)
T ss_pred CEEEEEEE--CCCCCCHHHHHHHHhhcCCCEEEEEEchhcCCcccc-------ccccC-CCceEEEECCCCCCHHHHHHH
Confidence 455 44333 11111111568999999999999754322 22333 34488888 79999999999
Q ss_pred HHHHH
Q psy3301 546 LATMA 550 (608)
Q Consensus 546 l~~~a 550 (608)
|.+.+
T Consensus 152 l~~~~ 156 (157)
T cd04164 152 LLELA 156 (157)
T ss_pred HHHhh
Confidence 98754
No 454
>KOG0075|consensus
Probab=98.84 E-value=1.7e-09 Score=93.42 Aligned_cols=139 Identities=20% Similarity=0.145 Sum_probs=102.3
Q ss_pred CCCceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCC---CceEecceEeCCcceeEeeeeccccc----cc-
Q psy3301 405 TTRNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECD---PPYTINTTTVYGQEKYLVLKEILVRD----EQ- 476 (608)
Q Consensus 405 ~~r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~---~~~~i~~~~v~Gqe~~~~l~~~~~~~----v~- 476 (608)
.....+.+.++|-.++|||||++....+.|.+.-.||.|.+.+. ..+.+.--+++||.+|+.+|+.|+|. +|
T Consensus 16 f~k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 16 FWKEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred HHHheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 33445789999999999999999999999988877888775444 34566667779999999999999998 44
Q ss_pred -ccCCCCcc------cccc---cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCC-------ceEEc--cCC
Q psy3301 477 -LPVLLPVD------VDCD---KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSP-------AHSFS--AAN 537 (608)
Q Consensus 477 -d~~l~~~~------~~~~---~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~-------~~~~S--~~~ 537 (608)
| ..+.+ .... ....-..+|+++.|||.|++.. ..-..+..++|+.. .|.+| ...
T Consensus 96 VD--aad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A-----L~~~~li~rmgL~sitdREvcC~siScke~~ 168 (186)
T KOG0075|consen 96 VD--AADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA-----LSKIALIERMGLSSITDREVCCFSISCKEKV 168 (186)
T ss_pred ee--cCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc-----ccHHHHHHHhCccccccceEEEEEEEEcCCc
Confidence 3 22222 1111 2223468999999999999852 33466777888752 35555 789
Q ss_pred CHHHHHHHHHHHH
Q psy3301 538 NDREVFVKLATMA 550 (608)
Q Consensus 538 ~v~e~F~~l~~~a 550 (608)
|++.+..+|.+..
T Consensus 169 Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 169 NIDITLDWLIEHS 181 (186)
T ss_pred cHHHHHHHHHHHh
Confidence 9999999998754
No 455
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.84 E-value=1.9e-08 Score=102.96 Aligned_cols=88 Identities=15% Similarity=0.077 Sum_probs=63.2
Q ss_pred CceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC--
Q psy3301 55 EMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-- 132 (608)
Q Consensus 55 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-- 132 (608)
.++.+.|+||+|..+.... ....||.+++|.+....+..+.+.. ..+ .+.-++|+||+|+.....
T Consensus 147 ~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~-------E~aDIiVVNKaDl~~~~~a~ 213 (332)
T PRK09435 147 AGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIM-------ELADLIVINKADGDNKTAAR 213 (332)
T ss_pred cCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhh-------hhhheEEeehhcccchhHHH
Confidence 3578999999998755433 4678999999976555555544331 111 123389999999764221
Q ss_pred ------------------------cccCcccCcCHHHHHHHHHHHHh
Q psy3301 133 ------------------------VESSAKTLKNISEMFYYAQKAVL 155 (608)
Q Consensus 133 ------------------------~e~SAk~~~~i~~lf~~l~~~i~ 155 (608)
+.+||+++.||+++++.+.+...
T Consensus 214 ~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 214 RAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67999999999999999988764
No 456
>PRK00089 era GTPase Era; Reviewed
Probab=98.83 E-value=2.1e-08 Score=102.50 Aligned_cols=139 Identities=16% Similarity=0.131 Sum_probs=83.4
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCC------CceEecceEeCCcceeEe-eee-------ccccc-
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECD------PPYTINTTTVYGQEKYLV-LKE-------ILVRD- 474 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~------~~~~i~~~~v~Gqe~~~~-l~~-------~~~~~- 474 (608)
-.|+|+|.+|||||||++++++..+........+..... ....+.-++.+|...... +.+ ....+
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~ 85 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDV 85 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcC
Confidence 358999999999999999999987654332111110000 112233344467432210 000 00011
Q ss_pred -----ccccCCCC-cc---cccccccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHH
Q psy3301 475 -----EQLPVLLP-VD---VDCDKYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVF 543 (608)
Q Consensus 475 -----v~d~~l~~-~~---~~~~~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F 543 (608)
++| .++ .. ..+.+.....+.|+++|+||+|+...++......+.+++.++..+.+++| ++.|+++++
T Consensus 86 D~il~vvd--~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~ 163 (292)
T PRK00089 86 DLVLFVVD--ADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNVDELL 163 (292)
T ss_pred CEEEEEEe--CCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHH
Confidence 444 333 11 11112233457899999999999744434455667777777766688899 899999999
Q ss_pred HHHHHHH
Q psy3301 544 VKLATMA 550 (608)
Q Consensus 544 ~~l~~~a 550 (608)
..|.+.+
T Consensus 164 ~~L~~~l 170 (292)
T PRK00089 164 DVIAKYL 170 (292)
T ss_pred HHHHHhC
Confidence 9999876
No 457
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=2.2e-08 Score=101.92 Aligned_cols=119 Identities=13% Similarity=0.103 Sum_probs=87.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCc----CCCC------------------CcceEecCccCCCceeEEEEeCC
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPEL----VPSK------------------AEEITIPPDVTPEMVPTHIVDYS 65 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~----~~~~------------------~~~~~i~~~~~~~~~~~~i~Dt~ 65 (608)
.+....+||-.|.+|||||...|+--.-... +... ....+-...+...++.++|.|||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP 89 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP 89 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence 4456789999999999999999874322211 1111 11112233467788999999999
Q ss_pred CCCCChHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC
Q psy3301 66 EVDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST 132 (608)
Q Consensus 66 G~~~~~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~ 132 (608)
||++|.+...+.+..+|.+++|+|+...-.-+.+ ++++..+ ..++||+=.+||.|......
T Consensus 90 GHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~--KLfeVcr----lR~iPI~TFiNKlDR~~rdP 150 (528)
T COG4108 90 GHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTL--KLFEVCR----LRDIPIFTFINKLDREGRDP 150 (528)
T ss_pred CccccchhHHHHHHhhheeeEEEecccCccHHHH--HHHHHHh----hcCCceEEEeeccccccCCh
Confidence 9999999999999999999999998876443443 3444444 46899999999999876554
No 458
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.83 E-value=1.1e-08 Score=118.45 Aligned_cols=115 Identities=17% Similarity=0.120 Sum_probs=81.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCc--CCCCC-----------cceEec-----Ccc--------------CCC
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPEL--VPSKA-----------EEITIP-----PDV--------------TPE 55 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~--~~~~~-----------~~~~i~-----~~~--------------~~~ 55 (608)
.+..+|+|+|..++|||||+.+|+...-... ..... ...++. ..+ ...
T Consensus 17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
T PLN00116 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN 96 (843)
T ss_pred cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence 3457899999999999999999986543211 00000 001111 111 113
Q ss_pred ceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCC
Q psy3301 56 MVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLV 128 (608)
Q Consensus 56 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 128 (608)
++.++++||||+.+|.......++.+|++|+|+|+...-..+... .|..... .++|+|+++||+|+.
T Consensus 97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~-~~~~~~~-----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG-----ERIRPVLTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHH-HHHHHHH-----CCCCEEEEEECCccc
Confidence 677899999999999999999999999999999999875544433 4544333 478999999999986
No 459
>KOG1490|consensus
Probab=98.82 E-value=1.2e-08 Score=105.29 Aligned_cols=146 Identities=13% Similarity=0.103 Sum_probs=103.0
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHH----H-----HH
Q psy3301 6 SLRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDE----L-----TE 76 (608)
Q Consensus 6 ~~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~----~-----~~ 76 (608)
.......++|||-||||||||++.+.........-+.++.......++.....++++||||.-+-... + ..
T Consensus 164 IDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITA 243 (620)
T KOG1490|consen 164 IDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITA 243 (620)
T ss_pred CCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHH
Confidence 34567789999999999999999998877654433333444444566777788999999995322111 1 11
Q ss_pred HHHhcCcEEEEEEcCC--hhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC--------------------cc
Q psy3301 77 EIQKAHVICLVYSVVD--DASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST--------------------VE 134 (608)
Q Consensus 77 ~~~~ad~iilV~d~~~--~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------------------~e 134 (608)
...--.+++++.|++. ..|...-. .++..|+ ....+.|.|+|.||+|+..... ++
T Consensus 244 LAHLraaVLYfmDLSe~CGySva~Qv-kLfhsIK--pLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~ 320 (620)
T KOG1490|consen 244 LAHLRSAVLYFMDLSEMCGYSVAAQV-KLYHSIK--PLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQ 320 (620)
T ss_pred HHHhhhhheeeeechhhhCCCHHHHH-HHHHHhH--HHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEE
Confidence 1122356888888874 46666654 6667777 5567899999999999986654 88
Q ss_pred cCcccCcCHHHHHHHHHHHH
Q psy3301 135 SSAKTLKNISEMFYYAQKAV 154 (608)
Q Consensus 135 ~SAk~~~~i~~lf~~l~~~i 154 (608)
+|+.+.+||-++-..+...+
T Consensus 321 tS~~~eegVm~Vrt~ACe~L 340 (620)
T KOG1490|consen 321 TSCVQEEGVMDVRTTACEAL 340 (620)
T ss_pred ecccchhceeeHHHHHHHHH
Confidence 99999999988766665554
No 460
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.82 E-value=1.1e-08 Score=118.17 Aligned_cols=99 Identities=20% Similarity=0.263 Sum_probs=67.7
Q ss_pred CCHHHHHHHHHcCCCCCcCCCCC----cceEecCccCC--------------CceeEEEEeCCCCCCChHHHHHHHHhcC
Q psy3301 21 VGKTSLILSLVSEEFPELVPSKA----EEITIPPDVTP--------------EMVPTHIVDYSEVDQTVDELTEEIQKAH 82 (608)
Q Consensus 21 vGKTSLi~~l~~~~~~~~~~~~~----~~~~i~~~~~~--------------~~~~~~i~Dt~G~~~~~~~~~~~~~~ad 82 (608)
++||||+.++.+......-.... ....++.+... ..-.+.+|||||++.|.......+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 45999999999887654322221 12222221100 0112899999999999887777888899
Q ss_pred cEEEEEEcCC---hhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCC
Q psy3301 83 VICLVYSVVD---DASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLV 128 (608)
Q Consensus 83 ~iilV~d~~~---~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 128 (608)
++++|+|+++ +++++.+. .+.. .++|+++|+||+|+.
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I~-----~lk~----~~iPiIVViNKiDL~ 591 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAIN-----ILRQ----YKTPFVVAANKIDLI 591 (1049)
T ss_pred EEEEEEECcccCCHhHHHHHH-----HHHH----cCCCEEEEEECCCCc
Confidence 9999999987 45555443 2332 368999999999985
No 461
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.82 E-value=2.7e-09 Score=98.80 Aligned_cols=137 Identities=15% Similarity=0.135 Sum_probs=74.8
Q ss_pred EEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEec----ceEeCC----------cceeEeeeeccccc--
Q psy3301 411 VCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTIN----TTTVYG----------QEKYLVLKEILVRD-- 474 (608)
Q Consensus 411 k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~----~~~v~G----------qe~~~~l~~~~~~~-- 474 (608)
+++++|++|||||||++.++++.+.....++++.+.....+..+ -++++| ++.+..+...+...
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVNDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRE 80 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccCeEEEecCCCccccccCHHHHHHHHHHHHHHHHhCh
Confidence 47899999999999999999776665555454431111111111 122344 22222221111111
Q ss_pred -------ccccCCCCcc----cccccccCCCCCcEEEEEeCCCCCcchh--cccccHHHHHH-HcCCCCceEEc--cCCC
Q psy3301 475 -------EQLPVLLPVD----VDCDKYFSTSKIPVMLVAGKSDMPRARQ--DYLMQPDIFCE-THKLSPAHSFS--AANN 538 (608)
Q Consensus 475 -------v~d~~l~~~~----~~~~~~~~~~~~p~ilVgnK~DL~~~~~--~~~~~~~~~~~-~~~~~~~~~~S--~~~~ 538 (608)
++| ..... ..+.++....+.|+++|+||+|+....+ ..........+ ....++.+++| ++.+
T Consensus 81 ~~~~~~~v~d--~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~ 158 (170)
T cd01876 81 NLKGVVLLID--SRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQG 158 (170)
T ss_pred hhhEEEEEEE--cCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCC
Confidence 222 22111 1111344445689999999999853222 12222233332 23344567888 8999
Q ss_pred HHHHHHHHHHH
Q psy3301 539 DREVFVKLATM 549 (608)
Q Consensus 539 v~e~F~~l~~~ 549 (608)
+.+++..|.+.
T Consensus 159 ~~~l~~~l~~~ 169 (170)
T cd01876 159 IDELRALIEKW 169 (170)
T ss_pred HHHHHHHHHHh
Confidence 99999999875
No 462
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.82 E-value=3.1e-09 Score=100.28 Aligned_cols=133 Identities=14% Similarity=0.121 Sum_probs=74.4
Q ss_pred CCCceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceE----ecceEeCCc----------ceeEeeeec
Q psy3301 405 TTRNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYT----INTTTVYGQ----------EKYLVLKEI 470 (608)
Q Consensus 405 ~~r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~----i~~~~v~Gq----------e~~~~l~~~ 470 (608)
..+..++++|+|++|||||||++++++..+...+.++++.+.....+. +.-++.+|. +.|..+...
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 93 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVNDGFRLVDLPGYGYAKVSKEEKEKWQKLIEE 93 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCCcEEEEeCCCCccccCChhHHHHHHHHHHH
Confidence 335668999999999999999999999875544444443311001111 223344662 223222222
Q ss_pred cccc---------ccccCCCCccccc----ccccCCCCCcEEEEEeCCCCCcch--hcccccHHHHHHHcCCC-CceEEc
Q psy3301 471 LVRD---------EQLPVLLPVDVDC----DKYFSTSKIPVMLVAGKSDMPRAR--QDYLMQPDIFCETHKLS-PAHSFS 534 (608)
Q Consensus 471 ~~~~---------v~d~~l~~~~~~~----~~~~~~~~~p~ilVgnK~DL~~~~--~~~~~~~~~~~~~~~~~-~~~~~S 534 (608)
+++. ++| .+..-... -+.....+.|+++|+||+|+.... +...++.++.++..+.. +.+++|
T Consensus 94 ~l~~~~~~~~ii~vvd--~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~S 171 (179)
T TIGR03598 94 YLEKRENLKGVVLLMD--IRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQLFS 171 (179)
T ss_pred HHHhChhhcEEEEEec--CCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEEEE
Confidence 2211 344 22211111 123334579999999999996432 22334555566665422 478898
Q ss_pred --cCCCH
Q psy3301 535 --AANND 539 (608)
Q Consensus 535 --~~~~v 539 (608)
+++|+
T Consensus 172 a~~g~gi 178 (179)
T TIGR03598 172 SLKKTGI 178 (179)
T ss_pred CCCCCCC
Confidence 78876
No 463
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=3.9e-08 Score=109.53 Aligned_cols=133 Identities=16% Similarity=0.083 Sum_probs=95.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCCc----CCCC-----------CcceEec---CccCCC-ceeEEEEeCCCC
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPEL----VPSK-----------AEEITIP---PDVTPE-MVPTHIVDYSEV 67 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~----~~~~-----------~~~~~i~---~~~~~~-~~~~~i~Dt~G~ 67 (608)
..+..+|.|+|+..+|||||..+++...-... +... ...+||. ..+.++ .+.++|+|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 44567899999999999999999986543221 1100 0112221 123455 489999999999
Q ss_pred CCChHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCCcccCcccCcCHHHHH
Q psy3301 68 DQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYSTVESSAKTLKNISEMF 147 (608)
Q Consensus 68 ~~~~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~e~SAk~~~~i~~lf 147 (608)
-+|.......++-+|++++|+|+...-..+... .|... ...++|.+++.||+|. .+.+...+.
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEt-v~rqa-----~~~~vp~i~fiNKmDR-----------~~a~~~~~~ 149 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTET-VWRQA-----DKYGVPRILFVNKMDR-----------LGADFYLVV 149 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHH-HHHHH-----hhcCCCeEEEEECccc-----------cccChhhhH
Confidence 999999999999999999999999876655555 67664 4468999999999995 445555555
Q ss_pred HHHHHHHhC
Q psy3301 148 YYAQKAVLH 156 (608)
Q Consensus 148 ~~l~~~i~~ 156 (608)
..+...+..
T Consensus 150 ~~l~~~l~~ 158 (697)
T COG0480 150 EQLKERLGA 158 (697)
T ss_pred HHHHHHhCC
Confidence 555555443
No 464
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.81 E-value=1.4e-08 Score=104.72 Aligned_cols=140 Identities=15% Similarity=0.155 Sum_probs=84.3
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCC-CCCC-----CCCCCCcCCCceEecceEeCCcc----eeEeeeeccccc--
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHD-SSKT-----SITSPVECDPPYTINTTTVYGQE----KYLVLKEILVRD-- 474 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~-~~~~-----~t~~~~~~~~~~~i~~~~v~Gqe----~~~~l~~~~~~~-- 474 (608)
+.+..|.+||.+|||||||++++.+.... ..|+ |+.+...+.....+.-++++|.. ....|...+.+.
T Consensus 155 k~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhie 234 (329)
T TIGR02729 155 KLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIE 234 (329)
T ss_pred eccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHH
Confidence 44578999999999999999999986532 1221 11111011111223334556642 222233222221
Q ss_pred -------ccccCCCCc---c--cccc-------cccC-CCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc
Q psy3301 475 -------EQLPVLLPV---D--VDCD-------KYFS-TSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS 534 (608)
Q Consensus 475 -------v~d~~l~~~---~--~~~~-------~~~~-~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S 534 (608)
|+| +++. + +... .+.. ..+.|+++|+||+|+..... ..+..++++++++.+ ++++|
T Consensus 235 rad~ll~VvD--~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~-vi~iS 310 (329)
T TIGR02729 235 RTRVLLHLID--ISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKP-VFPIS 310 (329)
T ss_pred hhCEEEEEEc--CccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCc-EEEEE
Confidence 677 5543 1 1111 1111 25789999999999976543 244566777777754 88899
Q ss_pred --cCCCHHHHHHHHHHHH
Q psy3301 535 --AANNDREVFVKLATMA 550 (608)
Q Consensus 535 --~~~~v~e~F~~l~~~a 550 (608)
++.|++++|..|++.+
T Consensus 311 Aktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 311 ALTGEGLDELLYALAELL 328 (329)
T ss_pred ccCCcCHHHHHHHHHHHh
Confidence 8999999999998753
No 465
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.81 E-value=5.9e-09 Score=97.65 Aligned_cols=55 Identities=15% Similarity=0.084 Sum_probs=39.4
Q ss_pred CCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHHHHHHH
Q psy3301 494 SKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFVKLATM 549 (608)
Q Consensus 494 ~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~~l~~~ 549 (608)
.+.|+++|+||+|+..............+...+. +++++| ++.|+++++..++..
T Consensus 119 ~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 119 TAKPVIYVLNKIDLDDAEELEEELVRELALEEGA-EVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred hhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCC-CEEEEehhhhcCHHHHHHHHHhh
Confidence 4799999999999976554433223344444444 488888 899999999998753
No 466
>PRK13768 GTPase; Provisional
Probab=98.80 E-value=2.1e-08 Score=99.73 Aligned_cols=71 Identities=18% Similarity=0.170 Sum_probs=45.2
Q ss_pred eEEEEeCCCCCCCh---HHHHH---HHHh--cCcEEEEEEcCChhhHHHHHH-hHHHHHhhhccCCCCcEEEEEeCcCCC
Q psy3301 58 PTHIVDYSEVDQTV---DELTE---EIQK--AHVICLVYSVVDDASIDRLSS-HWLPFLRNCLVDTCLPIVLVGNKVDLV 128 (608)
Q Consensus 58 ~~~i~Dt~G~~~~~---~~~~~---~~~~--ad~iilV~d~~~~~s~~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~ 128 (608)
.+.+||+||+.+.. ..... .+.. ++++++|+|++...+...... .|+..... ...++|+++|+||+|+.
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~--~~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQ--LRLGLPQIPVLNKADLL 175 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHH--HHcCCCEEEEEEhHhhc
Confidence 68999999976632 22222 2333 899999999975543332221 23333221 23478999999999987
Q ss_pred CC
Q psy3301 129 DY 130 (608)
Q Consensus 129 ~~ 130 (608)
..
T Consensus 176 ~~ 177 (253)
T PRK13768 176 SE 177 (253)
T ss_pred Cc
Confidence 54
No 467
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.80 E-value=7.9e-09 Score=95.92 Aligned_cols=141 Identities=18% Similarity=0.237 Sum_probs=89.3
Q ss_pred ceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecc----eEeCC----------cceeEeeeecccc
Q psy3301 408 NVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINT----TTVYG----------QEKYLVLKEILVR 473 (608)
Q Consensus 408 ~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~----~~v~G----------qe~~~~l~~~~~~ 473 (608)
....|+++|.+|||||||+++++++.-....+.|||.+.....|.++. |+++| ++++..+.+.|..
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~ 102 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLE 102 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCcEEEEeCCCcccccCCHHHHHHHHHHHHHHHh
Confidence 567899999999999999999999774334445777733334455554 34444 4444444444433
Q ss_pred c------ccccCCCCcc--cccc----cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCce-----EEc--
Q psy3301 474 D------EQLPVLLPVD--VDCD----KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAH-----SFS-- 534 (608)
Q Consensus 474 ~------v~d~~l~~~~--~~~~----~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~-----~~S-- 534 (608)
. ++- +++.+. ...| +|+...++|+++|+||+|-....+. .......++.+++.++. .+|
T Consensus 103 ~R~~L~~vvl-liD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~-~k~l~~v~~~l~~~~~~~~~~~~~ss~ 180 (200)
T COG0218 103 KRANLKGVVL-LIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSER-NKQLNKVAEELKKPPPDDQWVVLFSSL 180 (200)
T ss_pred hchhheEEEE-EEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHH-HHHHHHHHHHhcCCCCccceEEEEecc
Confidence 3 221 111111 2222 5666789999999999997654332 33446666666665442 234
Q ss_pred cCCCHHHHHHHHHHHH
Q psy3301 535 AANNDREVFVKLATMA 550 (608)
Q Consensus 535 ~~~~v~e~F~~l~~~a 550 (608)
++.|++++-..|.+..
T Consensus 181 ~k~Gi~~l~~~i~~~~ 196 (200)
T COG0218 181 KKKGIDELKAKILEWL 196 (200)
T ss_pred cccCHHHHHHHHHHHh
Confidence 7899999998888765
No 468
>PTZ00416 elongation factor 2; Provisional
Probab=98.80 E-value=1.6e-08 Score=116.72 Aligned_cols=115 Identities=18% Similarity=0.121 Sum_probs=79.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCc--CCCC-----------CcceEec-----CccC--------CCceeEEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPEL--VPSK-----------AEEITIP-----PDVT--------PEMVPTHI 61 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~--~~~~-----------~~~~~i~-----~~~~--------~~~~~~~i 61 (608)
.+..+|+|+|..++|||||+++|+....... .... ....++. ..+. ..+..+++
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 3456899999999999999999997432211 0000 0011111 1111 12567999
Q ss_pred EeCCCCCCChHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCC
Q psy3301 62 VDYSEVDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLV 128 (608)
Q Consensus 62 ~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 128 (608)
+||||+.+|.......++.+|++|+|+|+.+.-..+... .|..... .++|+|++.||+|+.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~-~~~~~~~-----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTET-VLRQALQ-----ERIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHH-HHHHHHH-----cCCCEEEEEEChhhh
Confidence 999999999988999999999999999999864444332 4433222 368999999999986
No 469
>PRK11058 GTPase HflX; Provisional
Probab=98.78 E-value=1.7e-08 Score=107.54 Aligned_cols=137 Identities=15% Similarity=0.099 Sum_probs=77.7
Q ss_pred ceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEe------cceEeCCccee--Eeeeecc------cc
Q psy3301 408 NVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTI------NTTTVYGQEKY--LVLKEIL------VR 473 (608)
Q Consensus 408 ~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i------~~~~v~Gqe~~--~~l~~~~------~~ 473 (608)
...+|+++|.+|||||||++++++..+.....+..+.+.....+.+ .-++.+|..+. ..+.+.+ .+
T Consensus 196 ~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~ 275 (426)
T PRK11058 196 DVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETR 275 (426)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence 3468999999999999999999987653221111111000112222 22344776331 1111111 11
Q ss_pred c------ccccCCCCcc--cccc------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCC
Q psy3301 474 D------EQLPVLLPVD--VDCD------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AAN 537 (608)
Q Consensus 474 ~------v~d~~l~~~~--~~~~------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~ 537 (608)
. |+| .++.. .... ......++|+++|+||+|+...... . .. ....+.+..+.+| ++.
T Consensus 276 ~ADlIL~VvD--aS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~---~-~~-~~~~~~~~~v~ISAktG~ 348 (426)
T PRK11058 276 QATLLLHVVD--AADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEP---R-ID-RDEENKPIRVWLSAQTGA 348 (426)
T ss_pred cCCEEEEEEe--CCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhH---H-HH-HHhcCCCceEEEeCCCCC
Confidence 1 677 55543 2211 2223457999999999999642111 0 11 1224444347788 899
Q ss_pred CHHHHHHHHHHHHc
Q psy3301 538 NDREVFVKLATMAA 551 (608)
Q Consensus 538 ~v~e~F~~l~~~a~ 551 (608)
|++++|..|.....
T Consensus 349 GIdeL~e~I~~~l~ 362 (426)
T PRK11058 349 GIPLLFQALTERLS 362 (426)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999998774
No 470
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.78 E-value=1.3e-08 Score=112.86 Aligned_cols=142 Identities=13% Similarity=0.060 Sum_probs=92.7
Q ss_pred eEEEEEEccCCCchHHHHHHHhcCC-------CCCCCCCC------CCCCcC------------CCceEecceEeCCcce
Q psy3301 409 VYVCHVIGNRSTGKTALCQSILRKH-------HDSSKTSI------TSPVEC------------DPPYTINTTTVYGQEK 463 (608)
Q Consensus 409 ~~k~~viG~~gvGKTsll~~f~~~~-------~~~~~~~t------~~~~~~------------~~~~~i~~~~v~Gqe~ 463 (608)
+=+++|+|..++|||||+.|++... +...+..+ .+++.. ...+.++-++.+|++.
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 3479999999999999999999752 22222211 122111 1124556666799998
Q ss_pred eEeeeeccccc------ccccCCCCcc--cccc--cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCC--Cce
Q psy3301 464 YLVLKEILVRD------EQLPVLLPVD--VDCD--KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLS--PAH 531 (608)
Q Consensus 464 ~~~l~~~~~~~------v~d~~l~~~~--~~~~--~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~--~~~ 531 (608)
|......+++. ++| .++.. .... ......++|+++|+||+|+..... ....+++++.+++. ..+
T Consensus 83 F~~~v~~~l~~aD~aILVvD--at~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~--~~~~~el~~~lg~~~~~vi 158 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVD--AAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADP--ERVKKEIEEVIGLDASEAI 158 (595)
T ss_pred HHHHHHHHHHhCCEEEEEec--CCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCH--HHHHHHHHHHhCCCcceEE
Confidence 87666655555 677 44422 1111 111235789999999999964321 23346777777764 268
Q ss_pred EEc--cCCCHHHHHHHHHHHHcCCC
Q psy3301 532 SFS--AANNDREVFVKLATMAAFPR 554 (608)
Q Consensus 532 ~~S--~~~~v~e~F~~l~~~a~~p~ 554 (608)
++| ++.|++++|..|++.+-.|.
T Consensus 159 ~vSAktG~GI~~Lle~I~~~lp~p~ 183 (595)
T TIGR01393 159 LASAKTGIGIEEILEAIVKRVPPPK 183 (595)
T ss_pred EeeccCCCCHHHHHHHHHHhCCCCC
Confidence 888 89999999999999886664
No 471
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.77 E-value=4.9e-08 Score=99.99 Aligned_cols=145 Identities=21% Similarity=0.212 Sum_probs=103.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCC--CCCc--CCCC---------CcceEe---cCccCCCceeEEEEeCCCCCCChH
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEE--FPEL--VPSK---------AEEITI---PPDVTPEMVPTHIVDYSEVDQTVD 72 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~--~~~~--~~~~---------~~~~~i---~~~~~~~~~~~~i~Dt~G~~~~~~ 72 (608)
+-.+|+|+-.-..|||||+..|+.+. |..+ +... ..-+|| ..-+.+.++.++|+|||||.+|-.
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence 34589999999999999999999764 4332 1111 011233 223567789999999999999999
Q ss_pred HHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC--------------------
Q psy3301 73 ELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-------------------- 132 (608)
Q Consensus 73 ~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-------------------- 132 (608)
.....+.-.|++++++|+.+..=-+. + +.+.. +...+.+.|+|+||+|.+..+.
T Consensus 84 EVERvl~MVDgvlLlVDA~EGpMPQT-r-FVlkK----Al~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQ 157 (603)
T COG1217 84 EVERVLSMVDGVLLLVDASEGPMPQT-R-FVLKK----ALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQ 157 (603)
T ss_pred hhhhhhhhcceEEEEEEcccCCCCch-h-hhHHH----HHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhh
Confidence 99999999999999999987522111 1 11111 2335778888899999987765
Q ss_pred -----cccCcccC----------cCHHHHHHHHHHHHhCCCC
Q psy3301 133 -----VESSAKTL----------KNISEMFYYAQKAVLHPMA 159 (608)
Q Consensus 133 -----~e~SAk~~----------~~i~~lf~~l~~~i~~~~~ 159 (608)
+..||++| .++.-+|+.+.+.+..|..
T Consensus 158 LdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~ 199 (603)
T COG1217 158 LDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKG 199 (603)
T ss_pred CCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCC
Confidence 45566665 4677888888888876654
No 472
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.75 E-value=2.4e-08 Score=110.29 Aligned_cols=135 Identities=14% Similarity=0.088 Sum_probs=87.5
Q ss_pred eEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCC-Cce------EecceEeCCcceeEeeeeccccc------c
Q psy3301 409 VYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECD-PPY------TINTTTVYGQEKYLVLKEILVRD------E 475 (608)
Q Consensus 409 ~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~-~~~------~i~~~~v~Gqe~~~~l~~~~~~~------v 475 (608)
..+|+++|..++|||||++++.+..+...+.+.++. ... ..+ .+.-++.+|++.|..++..+... |
T Consensus 87 ~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~-~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaILV 165 (587)
T TIGR00487 87 PPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQ-HIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVLV 165 (587)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhCCcccccCCceee-cceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEEEE
Confidence 368999999999999999999998876654322222 111 111 33345669999998887755553 5
Q ss_pred cccCCCCcc-----cccccccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCC--------CCceEEc--cCCCHH
Q psy3301 476 QLPVLLPVD-----VDCDKYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKL--------SPAHSFS--AANNDR 540 (608)
Q Consensus 476 ~d~~l~~~~-----~~~~~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~--------~~~~~~S--~~~~v~ 540 (608)
+| .++.. +.+ +.....++|+++|+||+|+.... .++..+.++++++ .+++++| ++.|++
T Consensus 166 Vd--a~dgv~~qT~e~i-~~~~~~~vPiIVviNKiDl~~~~---~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~ 239 (587)
T TIGR00487 166 VA--ADDGVMPQTIEAI-SHAKAANVPIIVAINKIDKPEAN---PDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGID 239 (587)
T ss_pred EE--CCCCCCHhHHHHH-HHHHHcCCCEEEEEECcccccCC---HHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChH
Confidence 55 33311 111 23334679999999999996421 1223333333332 2478899 899999
Q ss_pred HHHHHHHHHH
Q psy3301 541 EVFVKLATMA 550 (608)
Q Consensus 541 e~F~~l~~~a 550 (608)
++|..|+..+
T Consensus 240 eLl~~I~~~~ 249 (587)
T TIGR00487 240 ELLDMILLQS 249 (587)
T ss_pred HHHHhhhhhh
Confidence 9999997643
No 473
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.75 E-value=8e-09 Score=101.43 Aligned_cols=96 Identities=18% Similarity=0.103 Sum_probs=51.4
Q ss_pred eEEEEeCCCCCCChHHHHHHH--------HhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCC
Q psy3301 58 PTHIVDYSEVDQTVDELTEEI--------QKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVD 129 (608)
Q Consensus 58 ~~~i~Dt~G~~~~~~~~~~~~--------~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 129 (608)
.+.|+|||||.++...+...- ...-+++++.|+....+.......++-.+.. ....+.|.|.|.||+|+.+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~-~~~~~lP~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSI-MLRLELPHVNVLSKIDLLS 170 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHH-HHHHTSEEEEEE--GGGS-
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHH-HhhCCCCEEEeeeccCccc
Confidence 799999999977654433222 3456788889876443322221122211111 1224789999999999987
Q ss_pred CCC-----------------------------------------cccCcccCcCHHHHHHHHHHHH
Q psy3301 130 YST-----------------------------------------VESSAKTLKNISEMFYYAQKAV 154 (608)
Q Consensus 130 ~~~-----------------------------------------~e~SAk~~~~i~~lf~~l~~~i 154 (608)
... +++|+++++++.+++..+.+++
T Consensus 171 ~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 171 KYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred chhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 210 5677777777777777776654
No 474
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.74 E-value=7.1e-08 Score=92.31 Aligned_cols=87 Identities=18% Similarity=0.191 Sum_probs=58.2
Q ss_pred ceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCC--CC-
Q psy3301 56 MVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDY--ST- 132 (608)
Q Consensus 56 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~--~~- 132 (608)
.....++++.|....... ... -+|.++.|+|+.+.++... .+.+.+. ..=++++||+|+.+. ..
T Consensus 91 ~~D~iiIEt~G~~l~~~~-~~~--l~~~~i~vvD~~~~~~~~~---~~~~qi~-------~ad~~~~~k~d~~~~~~~~~ 157 (199)
T TIGR00101 91 PLEMVFIESGGDNLSATF-SPE--LADLTIFVIDVAAGDKIPR---KGGPGIT-------RSDLLVINKIDLAPMVGADL 157 (199)
T ss_pred CCCEEEEECCCCCccccc-chh--hhCcEEEEEEcchhhhhhh---hhHhHhh-------hccEEEEEhhhccccccccH
Confidence 356778899884322221 122 2688999999987766321 1112111 123889999999752 11
Q ss_pred ----------------cccCcccCcCHHHHHHHHHHHHh
Q psy3301 133 ----------------VESSAKTLKNISEMFYYAQKAVL 155 (608)
Q Consensus 133 ----------------~e~SAk~~~~i~~lf~~l~~~i~ 155 (608)
+++||++|.|++++|+++.+..+
T Consensus 158 ~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 158 GVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 99999999999999999987654
No 475
>KOG4223|consensus
Probab=98.73 E-value=1.6e-08 Score=99.07 Aligned_cols=147 Identities=20% Similarity=0.250 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHHHhcC
Q psy3301 172 ECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQRG 251 (608)
Q Consensus 172 ~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~~~~~ 251 (608)
.....=++.|+..|.|+||.++.+|+.+|+.=-=.-.+.+--++.-+..+++| +||.|+++||+.=+ |-..+
T Consensus 160 km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn------~DG~I~~eEfigd~--~~~~~ 231 (325)
T KOG4223|consen 160 KMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKN------GDGKISLEEFIGDL--YSHEG 231 (325)
T ss_pred HHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccC------CCCceeHHHHHhHH--hhccC
Confidence 34445578899999999999999999998752100111222344555566677 89999999999443 21221
Q ss_pred -CCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCCCCCC
Q psy3301 252 -RSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPECP 330 (608)
Q Consensus 252 -~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~~~~~ 330 (608)
..|.-| -+++. .+.|..+|+|+||+|+.+||+..+-+.+....
T Consensus 232 ~~~epeW-------------------------------v~~Er-----e~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A 275 (325)
T KOG4223|consen 232 NEEEPEW-------------------------------VLTER-----EQFFEFRDKNKDGKLDGDELLDWILPSEQDHA 275 (325)
T ss_pred CCCCccc-------------------------------ccccH-----HHHHHHhhcCCCCccCHHHHhcccCCCCccHH
Confidence 122223 12222 25688999999999999999987765542233
Q ss_pred CCCccccccceecCCCCccchhhHHhHhhhhh
Q psy3301 331 PWTDREMRAMVATNSKGWITMQGFLCYWILTT 362 (608)
Q Consensus 331 ~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~~~ 362 (608)
..++.-++.+.|.|+||.+|++|-+..|.|..
T Consensus 276 ~~EA~hL~~eaD~dkD~kLs~eEIl~~~d~Fv 307 (325)
T KOG4223|consen 276 KAEARHLLHEADEDKDGKLSKEEILEHYDVFV 307 (325)
T ss_pred HHHHHHHhhhhccCccccccHHHHhhCcceee
Confidence 35567888899999999999999999999864
No 476
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.72 E-value=7.7e-09 Score=84.75 Aligned_cols=68 Identities=16% Similarity=0.245 Sum_probs=57.1
Q ss_pred hHHHHHHHHHhhhc-CCCCC-CCCHHHHHHhhcc-----CCCCCCCCCccccccceecCCCCccchhhHHhHhhh
Q psy3301 293 KGQQFLTTLFYRFD-KDGDG-ALSPEEQARLFSL-----CPPECPPWTDREMRAMVATNSKGWITMQGFLCYWIL 360 (608)
Q Consensus 293 ~~~~~l~~~F~~fD-~d~dG-~ls~~El~~~~~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~ 360 (608)
.....|+++|+.|| +|+|| +|+.+||+.+++. .|....+.+++++++.+|.|++|.|+|++|+.+-.-
T Consensus 5 ~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 5 KAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 34678999999998 89999 5999999999998 663334455889999999999999999999876443
No 477
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.72 E-value=8.5e-09 Score=86.49 Aligned_cols=72 Identities=14% Similarity=0.203 Sum_probs=64.6
Q ss_pred ccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCCCCCCCCCccccccceecCCCCccchhhHHhHhhhhh
Q psy3301 289 ELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPECPPWTDREMRAMVATNSKGWITMQGFLCYWILTT 362 (608)
Q Consensus 289 eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~~~ 362 (608)
.|+.+....++.+|..||+|++|.|+.+|++.+|+..| ..+.+..+++..+|.+++|.|+|++|+..|...+
T Consensus 3 ~ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~ 74 (96)
T smart00027 3 AISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLIY 74 (96)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHH
Confidence 56788899999999999999999999999999999876 5555678999999999999999999999887764
No 478
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.72 E-value=8.2e-08 Score=98.17 Aligned_cols=88 Identities=19% Similarity=0.086 Sum_probs=61.4
Q ss_pred CceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCC---
Q psy3301 55 EMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYS--- 131 (608)
Q Consensus 55 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~--- 131 (608)
.++.+.|+||+|..... ...+..+|.++++-..... +.+. ...+.+ ..+|.++|.||+|+....
T Consensus 125 ~g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~-~~~~~l------~~~~~ivv~NK~Dl~~~~~~~ 191 (300)
T TIGR00750 125 AGYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQ-GIKAGL------MEIADIYVVNKADGEGATNVT 191 (300)
T ss_pred CCCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHH-HHHHHH------hhhccEEEEEcccccchhHHH
Confidence 46789999999965432 2356778999988543333 3333 122222 256889999999986321
Q ss_pred -----------------------CcccCcccCcCHHHHHHHHHHHHh
Q psy3301 132 -----------------------TVESSAKTLKNISEMFYYAQKAVL 155 (608)
Q Consensus 132 -----------------------~~e~SAk~~~~i~~lf~~l~~~i~ 155 (608)
.+++||+++.|++++++++.+...
T Consensus 192 ~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 192 IARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 178999999999999999988753
No 479
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.71 E-value=6.5e-08 Score=110.62 Aligned_cols=115 Identities=18% Similarity=0.113 Sum_probs=79.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCc--CCCCC-----------cceEecC-------ccCCCceeEEEEeCCCCC
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPEL--VPSKA-----------EEITIPP-------DVTPEMVPTHIVDYSEVD 68 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~--~~~~~-----------~~~~i~~-------~~~~~~~~~~i~Dt~G~~ 68 (608)
+..+|+|+|+.++|||||+.+|+....... ..... ..+++.. .....+..++++||||+.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 456799999999999999999986432211 00000 0011111 113356789999999999
Q ss_pred CChHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCC
Q psy3301 69 QTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVD 129 (608)
Q Consensus 69 ~~~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 129 (608)
+|.......++.+|++++|+|+......+... .|..... .++|+|++.||+|+..
T Consensus 99 df~~~~~~~l~~~D~avlVvda~~g~~~~t~~-~~~~~~~-----~~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 99 DFGGDVTRAMRAVDGAIVVVDAVEGVMPQTET-VLRQALR-----ERVKPVLFINKVDRLI 153 (731)
T ss_pred ChHHHHHHHHHhcCEEEEEEECCCCCCccHHH-HHHHHHH-----cCCCeEEEEECchhhc
Confidence 99888999999999999999988764433322 4443322 2568899999999763
No 480
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.71 E-value=1.3e-08 Score=97.12 Aligned_cols=142 Identities=13% Similarity=0.054 Sum_probs=77.1
Q ss_pred EEEEEEccCCCchHHHHHHHhcC----CCCCCCC-----CCCCCCcCC-----------------CceEecceEeCCcce
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRK----HHDSSKT-----SITSPVECD-----------------PPYTINTTTVYGQEK 463 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~----~~~~~~~-----~t~~~~~~~-----------------~~~~i~~~~v~Gqe~ 463 (608)
++++++|++|||||||+++|++. .+...+. .|....... ..+.++-++.+|+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 47999999999999999999973 2221110 111110000 123344455577654
Q ss_pred eEeeeecccc---c---ccccCCCCcc--cccc--cccCCCCCcEEEEEeCCCCCcc--hhcccccHHH-HHHH------
Q psy3301 464 YLVLKEILVR---D---EQLPVLLPVD--VDCD--KYFSTSKIPVMLVAGKSDMPRA--RQDYLMQPDI-FCET------ 524 (608)
Q Consensus 464 ~~~l~~~~~~---~---v~d~~l~~~~--~~~~--~~~~~~~~p~ilVgnK~DL~~~--~~~~~~~~~~-~~~~------ 524 (608)
+..-.-.... . |+| .+... ...+ ......+.|+++|+||+|+... .+...++..+ +.+.
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD--~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~ 158 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVD--ATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRF 158 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEE--CCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3111000001 1 455 33211 0000 1111236799999999998632 2222222222 2221
Q ss_pred cCCCCceEEc--cCCCHHHHHHHHHHHHcCCC
Q psy3301 525 HKLSPAHSFS--AANNDREVFVKLATMAAFPR 554 (608)
Q Consensus 525 ~~~~~~~~~S--~~~~v~e~F~~l~~~a~~p~ 554 (608)
.+. +.+++| ++.|+++++..|...+.-|.
T Consensus 159 ~~~-~vi~iSa~~g~gi~~L~~~l~~~~~~~~ 189 (192)
T cd01889 159 KNS-PIIPVSAKPGGGEAELGKDLNNLIVLPL 189 (192)
T ss_pred CCC-CEEEEeccCCCCHHHHHHHHHhcccccc
Confidence 233 378899 89999999999999887764
No 481
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.71 E-value=2.4e-09 Score=83.12 Aligned_cols=61 Identities=30% Similarity=0.411 Sum_probs=50.7
Q ss_pred HHHHHHhhhcCCCCCCCCHHHHHHhhccCCCCCCCCC----ccccccceecCCCCccchhhHHhH
Q psy3301 297 FLTTLFYRFDKDGDGALSPEEQARLFSLCPPECPPWT----DREMRAMVATNSKGWITMQGFLCY 357 (608)
Q Consensus 297 ~l~~~F~~fD~d~dG~ls~~El~~~~~~~~~~~~~~~----~~~~~~~~d~~~~g~i~~~ef~~~ 357 (608)
.|+.+|+.||+|++|+|+.+||+.++...+....+.. +..+++.+|+|+||.|+|+||+..
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~ 65 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNF 65 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhcc
Confidence 3788999999999999999999999999872222322 345588999999999999999875
No 482
>KOG0461|consensus
Probab=98.70 E-value=1.4e-07 Score=92.96 Aligned_cols=148 Identities=22% Similarity=0.239 Sum_probs=99.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCC----CCCcCCCCCcceEecCcc------------CCCceeEEEEeCCCCCCC
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEE----FPELVPSKAEEITIPPDV------------TPEMVPTHIVDYSEVDQT 70 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~----~~~~~~~~~~~~~i~~~~------------~~~~~~~~i~Dt~G~~~~ 70 (608)
.+..+++-++|.-.+|||+|.++|..-. |..+.+.+...+++-..+ ..+...+.++|+||+...
T Consensus 4 ~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasL 83 (522)
T KOG0461|consen 4 PPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASL 83 (522)
T ss_pred CCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHH
Confidence 4557999999999999999999998643 333333333333332222 235577899999997665
Q ss_pred hHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC------------------
Q psy3301 71 VDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST------------------ 132 (608)
Q Consensus 71 ~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~------------------ 132 (608)
...+.....-.|..++|+|+.....-+...-.++..+. ....++|.||+|+..+..
T Consensus 84 IRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~------c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~ 157 (522)
T KOG0461|consen 84 IRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL------CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLES 157 (522)
T ss_pred HHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh------ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHh
Confidence 44444444556889999999875333333212233222 335788889999876532
Q ss_pred ---------cccCcccC----cCHHHHHHHHHHHHhCCCCC
Q psy3301 133 ---------VESSAKTL----KNISEMFYYAQKAVLHPMAP 160 (608)
Q Consensus 133 ---------~e~SAk~~----~~i~~lf~~l~~~i~~~~~~ 160 (608)
+++||+.| ++|.++.+.+-.++..|...
T Consensus 158 t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd 198 (522)
T KOG0461|consen 158 TGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRD 198 (522)
T ss_pred cCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcC
Confidence 88899988 78888888888888776543
No 483
>PLN02964 phosphatidylserine decarboxylase
Probab=98.64 E-value=1.1e-07 Score=104.33 Aligned_cols=104 Identities=15% Similarity=0.210 Sum_probs=85.6
Q ss_pred cChHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccC-CCCChhh---HHHHHHHHHHhcCCCccCCCCcchhhHHHH
Q psy3301 168 ELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFD-APLSRDS---LEDVKIVIRKNINDGVSANNCITLNGFLFL 243 (608)
Q Consensus 168 ~l~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g-~~~~~~e---l~~i~~~~~~~~~~~~~~~~~i~~~~F~~l 243 (608)
.++....+.++++|..+|.|+||.+ +..+++. +| ..+++++ ++++++.+|.+ ++|.|++++|+.+
T Consensus 136 ~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrs-lG~~~pte~e~~fi~~mf~~~D~D------gdG~IdfdEFl~l 204 (644)
T PLN02964 136 DFVTQEPESACESFDLLDPSSSNKV----VGSIFVS-CSIEDPVETERSFARRILAIVDYD------EDGQLSFSEFSDL 204 (644)
T ss_pred hccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCC------CCCeEcHHHHHHH
Confidence 4566777899999999999999996 8888887 67 5788887 78888888877 7999999999988
Q ss_pred HHHHHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhc
Q psy3301 244 HNLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFS 323 (608)
Q Consensus 244 ~~~~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~ 323 (608)
+..+- ... ..+.+.++|+.||+|++|+|+.+||+.++.
T Consensus 205 L~~lg-~~~-----------------------------------------seEEL~eaFk~fDkDgdG~Is~dEL~~vL~ 242 (644)
T PLN02964 205 IKAFG-NLV-----------------------------------------AANKKEELFKAADLNGDGVVTIDELAALLA 242 (644)
T ss_pred HHHhc-cCC-----------------------------------------CHHHHHHHHHHhCCCCCCcCCHHHHHHHHH
Confidence 76321 100 135689999999999999999999999998
Q ss_pred c
Q psy3301 324 L 324 (608)
Q Consensus 324 ~ 324 (608)
.
T Consensus 243 ~ 243 (644)
T PLN02964 243 L 243 (644)
T ss_pred h
Confidence 7
No 484
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.63 E-value=4.5e-08 Score=101.68 Aligned_cols=144 Identities=13% Similarity=0.069 Sum_probs=88.7
Q ss_pred cccCCCceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCC-CcCCCceEecceEe-----CCcceeEe-eeeccccc
Q psy3301 402 KKQTTRNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSP-VECDPPYTINTTTV-----YGQEKYLV-LKEILVRD 474 (608)
Q Consensus 402 ~~~~~r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~-~~~~~~~~i~~~~v-----~Gqe~~~~-l~~~~~~~ 474 (608)
+++..|.-+|++++|.||||||||+|.++++.-.-..+-..++ +.....+.++++++ +|-..-.- +-....+.
T Consensus 210 ~g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeR 289 (454)
T COG0486 210 QGKILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIER 289 (454)
T ss_pred hhhhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHH
Confidence 4445677799999999999999999999998876665534444 33346778888887 55221110 00000000
Q ss_pred -------------ccccCCCCcccccc---cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cC
Q psy3301 475 -------------EQLPVLLPVDVDCD---KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AA 536 (608)
Q Consensus 475 -------------v~d~~l~~~~~~~~---~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~ 536 (608)
++| .+......| -.....+.|+++|.||+||...... ..+ +-.+-.+.+.+| ++
T Consensus 290 s~~~i~~ADlvL~v~D--~~~~~~~~d~~~~~~~~~~~~~i~v~NK~DL~~~~~~-----~~~-~~~~~~~~i~iSa~t~ 361 (454)
T COG0486 290 AKKAIEEADLVLFVLD--ASQPLDKEDLALIELLPKKKPIIVVLNKADLVSKIEL-----ESE-KLANGDAIISISAKTG 361 (454)
T ss_pred HHHHHHhCCEEEEEEe--CCCCCchhhHHHHHhcccCCCEEEEEechhccccccc-----chh-hccCCCceEEEEecCc
Confidence 344 222111111 1123577999999999999864331 112 111111367888 89
Q ss_pred CCHHHHHHHHHHHHcCC
Q psy3301 537 NNDREVFVKLATMAAFP 553 (608)
Q Consensus 537 ~~v~e~F~~l~~~a~~p 553 (608)
.|++.+-..|.+....-
T Consensus 362 ~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 362 EGLDALREAIKQLFGKG 378 (454)
T ss_pred cCHHHHHHHHHHHHhhc
Confidence 99999999998877444
No 485
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.62 E-value=3.6e-07 Score=89.37 Aligned_cols=68 Identities=16% Similarity=0.127 Sum_probs=42.8
Q ss_pred eeEEEEeCCCCCCC-------------hHHHHHHHH-hcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEE
Q psy3301 57 VPTHIVDYSEVDQT-------------VDELTEEIQ-KAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVG 122 (608)
Q Consensus 57 ~~~~i~Dt~G~~~~-------------~~~~~~~~~-~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~ 122 (608)
..+.++||||.... ..+...+++ ..++|++|.|+...-+-.... .+.+.+. ....|+++|+
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l-~ia~~ld----~~~~rti~Vi 199 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDAL-KLAKEVD----PQGERTIGVI 199 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHH-HHHHHHH----HcCCcEEEEE
Confidence 56899999997421 112455677 456899999886532211211 2333333 3478999999
Q ss_pred eCcCCCC
Q psy3301 123 NKVDLVD 129 (608)
Q Consensus 123 nK~Dl~~ 129 (608)
||+|...
T Consensus 200 TK~D~~~ 206 (240)
T smart00053 200 TKLDLMD 206 (240)
T ss_pred ECCCCCC
Confidence 9999754
No 486
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=1.1e-07 Score=93.18 Aligned_cols=146 Identities=21% Similarity=0.219 Sum_probs=103.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCC---CCCcCCCCC--------------------cceEecCccC------CCcee
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEE---FPELVPSKA--------------------EEITIPPDVT------PEMVP 58 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~---~~~~~~~~~--------------------~~~~i~~~~~------~~~~~ 58 (608)
+..++|-++|.-..|||||..+|.+-- +.+...... ...+...... .---.
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 678999999999999999999998642 222111100 0000000000 01135
Q ss_pred EEEEeCCCCCCChHHHHHHHHhcCcEEEEEEcCC----hhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC--
Q psy3301 59 THIVDYSEVDQTVDELTEEIQKAHVICLVYSVVD----DASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-- 132 (608)
Q Consensus 59 ~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~~----~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-- 132 (608)
+.++|.||+|-....+.+...-.|++++|++++. +++-+++. -++.+. -..+|+|-||+||...+.
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~--AleIig------ik~iiIvQNKIDlV~~E~Al 159 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLM--ALEIIG------IKNIIIVQNKIDLVSRERAL 159 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHH--HHhhhc------cceEEEEecccceecHHHHH
Confidence 8899999998877777666677799999999985 36666654 233333 237899999999987654
Q ss_pred --------------------cccCcccCcCHHHHHHHHHHHHhCCCCCc
Q psy3301 133 --------------------VESSAKTLKNISEMFYYAQKAVLHPMAPI 161 (608)
Q Consensus 133 --------------------~e~SAk~~~~i~~lf~~l~~~i~~~~~~l 161 (608)
+++||..+.||+-+++++.+.+-.|...+
T Consensus 160 E~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd~ 208 (415)
T COG5257 160 ENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERDL 208 (415)
T ss_pred HHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccCC
Confidence 99999999999999999999997766543
No 487
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.62 E-value=8.5e-08 Score=109.09 Aligned_cols=135 Identities=10% Similarity=0.084 Sum_probs=88.3
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCc------C-CCceEecceEeCCcceeEeeeec----------cc
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVE------C-DPPYTINTTTVYGQEKYLVLKEI----------LV 472 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~------~-~~~~~i~~~~v~Gqe~~~~l~~~----------~~ 472 (608)
++|+++|.+|||||||++++.+...... ..++.+. + .....++-++++|+..+....+. +.
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~~vg--n~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQRVG--NWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCccC--CCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 6899999999999999999998754221 1233311 0 12234455666888776543221 11
Q ss_pred c----c----ccccCCCCcccccc--cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHH
Q psy3301 473 R----D----EQLPVLLPVDVDCD--KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDR 540 (608)
Q Consensus 473 ~----~----v~d~~l~~~~~~~~--~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~ 540 (608)
. + |+| .++.+.+.. ......++|+++|.||+|+.+.+.+ ..+.++++++++++ .+++| ++.|++
T Consensus 82 ~~~~aD~vI~VvD--at~ler~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~p-VvpiSA~~g~GId 157 (772)
T PRK09554 82 LSGDADLLINVVD--ASNLERNLYLTLQLLELGIPCIVALNMLDIAEKQNI-RIDIDALSARLGCP-VIPLVSTRGRGIE 157 (772)
T ss_pred hccCCCEEEEEec--CCcchhhHHHHHHHHHcCCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCC-EEEEEeecCCCHH
Confidence 1 1 444 333221111 1223457999999999999765544 35678899999986 88899 899999
Q ss_pred HHHHHHHHHH
Q psy3301 541 EVFVKLATMA 550 (608)
Q Consensus 541 e~F~~l~~~a 550 (608)
++...+.+..
T Consensus 158 eL~~~I~~~~ 167 (772)
T PRK09554 158 ALKLAIDRHQ 167 (772)
T ss_pred HHHHHHHHhh
Confidence 9999988765
No 488
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.62 E-value=9e-08 Score=95.02 Aligned_cols=130 Identities=22% Similarity=0.211 Sum_probs=89.6
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHHcCCCCC---c------CC---CCC------------------cceEecC---cc
Q psy3301 6 SLRRNVRILLLGDRHVGKTSLILSLVSEEFPE---L------VP---SKA------------------EEITIPP---DV 52 (608)
Q Consensus 6 ~~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~---~------~~---~~~------------------~~~~i~~---~~ 52 (608)
.++..+|.+-||.-.-||||||-||+.+.-.. . .. .+. ..+||-+ -|
T Consensus 2 ~~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyF 81 (431)
T COG2895 2 QHKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYF 81 (431)
T ss_pred CcccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeec
Confidence 45677899999999999999999999764211 0 00 000 0112211 12
Q ss_pred CCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEcCCh---hhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCC
Q psy3301 53 TPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSVVDD---ASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVD 129 (608)
Q Consensus 53 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~~~---~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 129 (608)
.-.+-++.|.|||||++|...+......||++|+++|+... ++-.+. ++..++. =..++|..||+||.+
T Consensus 82 sT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs--~I~sLLG------IrhvvvAVNKmDLvd 153 (431)
T COG2895 82 STEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHS--FIASLLG------IRHVVVAVNKMDLVD 153 (431)
T ss_pred ccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHH--HHHHHhC------CcEEEEEEeeecccc
Confidence 44566899999999999988888888899999999998643 221111 1222222 236899999999998
Q ss_pred CCC------------------------cccCcccCcCH
Q psy3301 130 YST------------------------VESSAKTLKNI 143 (608)
Q Consensus 130 ~~~------------------------~e~SAk~~~~i 143 (608)
... ++.||..|.||
T Consensus 154 y~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV 191 (431)
T COG2895 154 YSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNV 191 (431)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCcc
Confidence 765 78888888886
No 489
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.61 E-value=1.9e-07 Score=86.96 Aligned_cols=63 Identities=19% Similarity=0.207 Sum_probs=44.3
Q ss_pred eEEEEeCCCCCC----ChHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCc
Q psy3301 58 PTHIVDYSEVDQ----TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKV 125 (608)
Q Consensus 58 ~~~i~Dt~G~~~----~~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~ 125 (608)
.+.|+||||... ....+..++..+|++|+|.+++...+-.... .|...... ....+++|.||+
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~-~l~~~~~~----~~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDME-FLKQMLDP----DKSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHH-HHHHHHTT----TCSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHH-HHHHHhcC----CCCeEEEEEcCC
Confidence 489999999632 2356788899999999999999865534333 55555542 233489999985
No 490
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.61 E-value=1.4e-07 Score=92.74 Aligned_cols=49 Identities=18% Similarity=0.158 Sum_probs=37.2
Q ss_pred CCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHHHHHHHH
Q psy3301 494 SKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFVKLATMA 550 (608)
Q Consensus 494 ~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~~l~~~a 550 (608)
..+|+++|+||+|+... ++...+++. ++++++| ++.|++++|..+.+..
T Consensus 175 ~y~p~iiV~NK~Dl~~~-----~~~~~~~~~---~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 175 VYIPCLYVYNKIDLISI-----EELDLLARQ---PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred eEeeEEEEEECccCCCH-----HHHHHHhcC---CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 34799999999998643 334456554 2367888 8999999999998854
No 491
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.60 E-value=7e-08 Score=108.23 Aligned_cols=140 Identities=14% Similarity=0.145 Sum_probs=87.9
Q ss_pred ceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCC--CcCCC-------ceEecceEeCCcceeEeeeeccccc----
Q psy3301 408 NVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSP--VECDP-------PYTINTTTVYGQEKYLVLKEILVRD---- 474 (608)
Q Consensus 408 ~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~--~~~~~-------~~~i~~~~v~Gqe~~~~l~~~~~~~---- 474 (608)
....|+|+|..++|||||+.++.+..+.......++. ..|.. .+.+.-++++|++.|..++..++..
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDia 322 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIA 322 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEE
Confidence 4468999999999999999999988776543322221 11111 1334445669999998777655554
Q ss_pred --ccccCCCCc---c--cccccccCCCCCcEEEEEeCCCCCcchhc-ccccHHH---HHHHcC-CCCceEEc--cCCCHH
Q psy3301 475 --EQLPVLLPV---D--VDCDKYFSTSKIPVMLVAGKSDMPRARQD-YLMQPDI---FCETHK-LSPAHSFS--AANNDR 540 (608)
Q Consensus 475 --v~d~~l~~~---~--~~~~~~~~~~~~p~ilVgnK~DL~~~~~~-~~~~~~~---~~~~~~-~~~~~~~S--~~~~v~ 540 (608)
|+| .++. + +.+ +.....++|+|+|+||+|+...... ...+... ++..++ ..+++++| ++.|++
T Consensus 323 ILVVD--A~dGv~~QT~E~I-~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GId 399 (742)
T CHL00189 323 ILIIA--ADDGVKPQTIEAI-NYIQAANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNID 399 (742)
T ss_pred EEEEE--CcCCCChhhHHHH-HHHHhcCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHH
Confidence 555 3331 1 122 2334567999999999999752210 0001101 123333 23478889 899999
Q ss_pred HHHHHHHHHH
Q psy3301 541 EVFVKLATMA 550 (608)
Q Consensus 541 e~F~~l~~~a 550 (608)
++|..|+..+
T Consensus 400 eLle~I~~l~ 409 (742)
T CHL00189 400 KLLETILLLA 409 (742)
T ss_pred HHHHhhhhhh
Confidence 9999998765
No 492
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.60 E-value=4.3e-08 Score=97.03 Aligned_cols=80 Identities=21% Similarity=0.284 Sum_probs=66.4
Q ss_pred CCChHHHHHHHHhcCcEEEEEEcCChh-hHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC--------------
Q psy3301 68 DQTVDELTEEIQKAHVICLVYSVVDDA-SIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-------------- 132 (608)
Q Consensus 68 ~~~~~~~~~~~~~ad~iilV~d~~~~~-s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-------------- 132 (608)
+++..+.+.+++++|++++|||++++. +++.+. .|+..+.. .++|++||+||+||.+...
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~-r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~ 98 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLD-RFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGY 98 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHH-HHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHHHHCCC
Confidence 566666777899999999999999887 898887 88876652 5799999999999965322
Q ss_pred --cccCcccCcCHHHHHHHHHH
Q psy3301 133 --VESSAKTLKNISEMFYYAQK 152 (608)
Q Consensus 133 --~e~SAk~~~~i~~lf~~l~~ 152 (608)
+++||++|.|++++|..+.+
T Consensus 99 ~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 99 QVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred eEEEEecCCchhHHHHHhhhcC
Confidence 88999999999999987653
No 493
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.60 E-value=9.5e-08 Score=102.49 Aligned_cols=140 Identities=19% Similarity=0.128 Sum_probs=78.6
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCC-CCCCCCCCCcCC-C-----ceEecceEeCCc----ceeEeeee----cc
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDS-SKTSITSPVECD-P-----PYTINTTTVYGQ----EKYLVLKE----IL 471 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~-~~~~t~~~~~~~-~-----~~~i~~~~v~Gq----e~~~~l~~----~~ 471 (608)
+.+.+|.+||.+|||||||++++.+..... .|. -.+. ... . ...+.-++++|. .....|.. ..
T Consensus 157 k~~adV~LVG~PNAGKSTLln~Ls~akpkIadyp-fTTl-~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhi 234 (500)
T PRK12296 157 KSVADVGLVGFPSAGKSSLISALSAAKPKIADYP-FTTL-VPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHI 234 (500)
T ss_pred cccceEEEEEcCCCCHHHHHHHHhcCCccccccC-cccc-cceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHH
Confidence 456789999999999999999999865432 222 1111 000 1 112222344662 11111100 11
Q ss_pred ccc-----ccccCCCCc----c-----c----cccccc----------CCCCCcEEEEEeCCCCCcchhcccccHHHHHH
Q psy3301 472 VRD-----EQLPVLLPV----D-----V----DCDKYF----------STSKIPVMLVAGKSDMPRARQDYLMQPDIFCE 523 (608)
Q Consensus 472 ~~~-----v~d~~l~~~----~-----~----~~~~~~----------~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~ 523 (608)
.+. |+| +++. + + .+..+. ...+.|+|+|+||+|+.+.+..... ..+..+
T Consensus 235 eradvLv~VVD--~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~-l~~~l~ 311 (500)
T PRK12296 235 ERCAVLVHVVD--CATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEF-VRPELE 311 (500)
T ss_pred HhcCEEEEEEC--CcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHH-HHHHHH
Confidence 111 566 4431 1 1 111222 1246899999999999765443222 222233
Q ss_pred HcCCCCceEEc--cCCCHHHHHHHHHHHHcC
Q psy3301 524 THKLSPAHSFS--AANNDREVFVKLATMAAF 552 (608)
Q Consensus 524 ~~~~~~~~~~S--~~~~v~e~F~~l~~~a~~ 552 (608)
+.+.+ .+++| ++.|+++++..|++.+..
T Consensus 312 ~~g~~-Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 312 ARGWP-VFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred HcCCe-EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 44654 78899 899999999999987644
No 494
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.59 E-value=2.1e-08 Score=77.93 Aligned_cols=62 Identities=21% Similarity=0.326 Sum_probs=55.6
Q ss_pred HHHHhhhcCCCCCCCCHHHHHHhhccCCCCCCCCCccccccceecCCCCccchhhHHhHhhhhh
Q psy3301 299 TTLFYRFDKDGDGALSPEEQARLFSLCPPECPPWTDREMRAMVATNSKGWITMQGFLCYWILTT 362 (608)
Q Consensus 299 ~~~F~~fD~d~dG~ls~~El~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~~~ 362 (608)
+++|+.+|+|++|.|+.+|++.++...| .+..+..++++.++.+++|.|+|++|+..|...+
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~ 63 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIA 63 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHH
Confidence 5689999999999999999999999887 5556678899999999999999999999998764
No 495
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.59 E-value=1.3e-07 Score=106.96 Aligned_cols=138 Identities=14% Similarity=0.095 Sum_probs=86.9
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCC--CcCC---CceEecceEeCCcceeEeeeeccccc------cccc
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSP--VECD---PPYTINTTTVYGQEKYLVLKEILVRD------EQLP 478 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~--~~~~---~~~~i~~~~v~Gqe~~~~l~~~~~~~------v~d~ 478 (608)
..|+|+|..++|||||++++.+..+.......++. ..+. ....++-++++|++.|..++..+... |+|
T Consensus 291 pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVd- 369 (787)
T PRK05306 291 PVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVA- 369 (787)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEEEEE-
Confidence 57999999999999999999987775443222221 0011 12345556669999998887755543 565
Q ss_pred CCCCc---c--cccccccCCCCCcEEEEEeCCCCCcch--hccc--ccHHHHHHHcC-CCCceEEc--cCCCHHHHHHHH
Q psy3301 479 VLLPV---D--VDCDKYFSTSKIPVMLVAGKSDMPRAR--QDYL--MQPDIFCETHK-LSPAHSFS--AANNDREVFVKL 546 (608)
Q Consensus 479 ~l~~~---~--~~~~~~~~~~~~p~ilVgnK~DL~~~~--~~~~--~~~~~~~~~~~-~~~~~~~S--~~~~v~e~F~~l 546 (608)
.++. + +.+ ++....++|+|+|+||+|+.... .+.. .+...+++.++ -.+++++| ++.|++++|..|
T Consensus 370 -AddGv~~qT~e~i-~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I 447 (787)
T PRK05306 370 -ADDGVMPQTIEAI-NHAKAAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAI 447 (787)
T ss_pred -CCCCCCHhHHHHH-HHHHhcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhh
Confidence 4331 1 111 33345679999999999996421 1110 01112234444 12478899 899999999999
Q ss_pred HHHH
Q psy3301 547 ATMA 550 (608)
Q Consensus 547 ~~~a 550 (608)
...+
T Consensus 448 ~~~~ 451 (787)
T PRK05306 448 LLQA 451 (787)
T ss_pred hhhh
Confidence 8643
No 496
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.59 E-value=1.4e-07 Score=99.89 Aligned_cols=137 Identities=18% Similarity=0.173 Sum_probs=81.0
Q ss_pred ceEEEEEEccCCCchHHHHHHHhcCCCCC-CCCC-CCCCC----cCCCceEecceEeCCc----ceeEeeeeccccc---
Q psy3301 408 NVYVCHVIGNRSTGKTALCQSILRKHHDS-SKTS-ITSPV----ECDPPYTINTTTVYGQ----EKYLVLKEILVRD--- 474 (608)
Q Consensus 408 ~~~k~~viG~~gvGKTsll~~f~~~~~~~-~~~~-t~~~~----~~~~~~~i~~~~v~Gq----e~~~~l~~~~~~~--- 474 (608)
-+-.|.+||.+|||||||++++++..... .|.- |...+ .+.....+.-++++|. .....|...+.+.
T Consensus 157 ~~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier 236 (424)
T PRK12297 157 LLADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIER 236 (424)
T ss_pred ccCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhh
Confidence 34589999999999999999999865321 2221 11110 0000112223344653 2222232222221
Q ss_pred ------ccccCCCCc---c--cccc-------cccC-CCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc-
Q psy3301 475 ------EQLPVLLPV---D--VDCD-------KYFS-TSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS- 534 (608)
Q Consensus 475 ------v~d~~l~~~---~--~~~~-------~~~~-~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S- 534 (608)
++| +++. + +... .+.. ..+.|+++|+||+||... .+..+++++.++. +.+++|
T Consensus 237 ~~llI~VID--~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~-~i~~iSA 309 (424)
T PRK12297 237 TRVIVHVID--MSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA----EENLEEFKEKLGP-KVFPISA 309 (424)
T ss_pred CCEEEEEEe--CCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCC-cEEEEeC
Confidence 667 5433 1 1111 2211 247899999999998532 2345677877774 478899
Q ss_pred -cCCCHHHHHHHHHHHHc
Q psy3301 535 -AANNDREVFVKLATMAA 551 (608)
Q Consensus 535 -~~~~v~e~F~~l~~~a~ 551 (608)
++.|+++++..|++.+.
T Consensus 310 ~tgeGI~eL~~~L~~~l~ 327 (424)
T PRK12297 310 LTGQGLDELLYAVAELLE 327 (424)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 89999999999998764
No 497
>KOG1707|consensus
Probab=98.59 E-value=4.1e-07 Score=96.06 Aligned_cols=148 Identities=21% Similarity=0.290 Sum_probs=102.9
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCC-cceEec-CccCCCceeEEEEeCCCCCCChHHHHHHHHhcCc
Q psy3301 6 SLRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKA-EEITIP-PDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHV 83 (608)
Q Consensus 6 ~~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~-~~~~i~-~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 83 (608)
..++.+++.++|+.++|||.|+++++++.+..+..++. ....+. +.+.++...+.+-|.+-.+. ....... ..+|+
T Consensus 421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~~~-~~l~~ke-~~cDv 498 (625)
T KOG1707|consen 421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGEDDQ-DFLTSKE-AACDV 498 (625)
T ss_pred ccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcccc-ccccCcc-ceeee
Confidence 34567899999999999999999999998876533322 333332 22234445566666654311 1111122 77999
Q ss_pred EEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC------------------cccCcccCcCHHH
Q psy3301 84 ICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST------------------VESSAKTLKNISE 145 (608)
Q Consensus 84 iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~------------------~e~SAk~~~~i~~ 145 (608)
++++||.+++.+|+.+.. ....-. ....+|+++|+.|+|+.+..+ +..|.++... .+
T Consensus 499 ~~~~YDsS~p~sf~~~a~-v~~~~~---~~~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~ 573 (625)
T KOG1707|consen 499 ACLVYDSSNPRSFEYLAE-VYNKYF---DLYKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NE 573 (625)
T ss_pred EEEecccCCchHHHHHHH-HHHHhh---hccCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-ch
Confidence 999999999999998873 333222 237899999999999987653 6677775333 89
Q ss_pred HHHHHHHHHhCCCCC
Q psy3301 146 MFYYAQKAVLHPMAP 160 (608)
Q Consensus 146 lf~~l~~~i~~~~~~ 160 (608)
+|..+...+.+|..+
T Consensus 574 lf~kL~~~A~~Ph~~ 588 (625)
T KOG1707|consen 574 LFIKLATMAQYPHIP 588 (625)
T ss_pred HHHHHHHhhhCCCcc
Confidence 999999999988843
No 498
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.58 E-value=3.7e-08 Score=81.89 Aligned_cols=69 Identities=17% Similarity=0.226 Sum_probs=54.9
Q ss_pred hHHHHHHHHHhhhc-CCCCCC-CCHHHHHHhhcc-CCC----CCCCCCccccccceecCCCCccchhhHHhHhhhh
Q psy3301 293 KGQQFLTTLFYRFD-KDGDGA-LSPEEQARLFSL-CPP----ECPPWTDREMRAMVATNSKGWITMQGFLCYWILT 361 (608)
Q Consensus 293 ~~~~~l~~~F~~fD-~d~dG~-ls~~El~~~~~~-~~~----~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~~ 361 (608)
.+...++++|.+|| +|+||. |+.+||+.++.. .|. ...+.+.+++++.+|.|+||.|+|+||+....-.
T Consensus 7 ~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 7 GAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 34778999999999 899995 999999999976 221 1122347899999999999999999998765433
No 499
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.57 E-value=4.7e-08 Score=108.46 Aligned_cols=137 Identities=15% Similarity=0.093 Sum_probs=87.4
Q ss_pred EEEEEccCCCchHHHHHHHhcC---CCCCCCCCCCCCCcCC------CceEecceEeCCcceeEeeeeccccc------c
Q psy3301 411 VCHVIGNRSTGKTALCQSILRK---HHDSSKTSITSPVECD------PPYTINTTTVYGQEKYLVLKEILVRD------E 475 (608)
Q Consensus 411 k~~viG~~gvGKTsll~~f~~~---~~~~~~~~t~~~~~~~------~~~~i~~~~v~Gqe~~~~l~~~~~~~------v 475 (608)
.+.++|..++|||||++++++. .+..++...++. ++. ..+.++-++++|+++|......+..+ |
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTi-d~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV 80 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTI-DLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV 80 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceE-EeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence 5889999999999999999973 333333323332 111 12345556679999886444333333 5
Q ss_pred cccCCCCc---c--cccccccCCCCCc-EEEEEeCCCCCcchhc--ccccHHHHHHHcCC---CCceEEc--cCCCHHHH
Q psy3301 476 QLPVLLPV---D--VDCDKYFSTSKIP-VMLVAGKSDMPRARQD--YLMQPDIFCETHKL---SPAHSFS--AANNDREV 542 (608)
Q Consensus 476 ~d~~l~~~---~--~~~~~~~~~~~~p-~ilVgnK~DL~~~~~~--~~~~~~~~~~~~~~---~~~~~~S--~~~~v~e~ 542 (608)
+| .++. + +.+. .....++| +++|+||+|+.+.... ..++..++++..++ .+++++| ++.|++++
T Consensus 81 VD--a~~G~~~qT~ehl~-il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL 157 (581)
T TIGR00475 81 VD--ADEGVMTQTGEHLA-VLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGEL 157 (581)
T ss_pred EE--CCCCCcHHHHHHHH-HHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhH
Confidence 66 4431 1 2221 22235678 9999999999754422 23456677776643 3478899 89999999
Q ss_pred HHHHHHHHc
Q psy3301 543 FVKLATMAA 551 (608)
Q Consensus 543 F~~l~~~a~ 551 (608)
+..|.+.+-
T Consensus 158 ~~~L~~l~~ 166 (581)
T TIGR00475 158 KKELKNLLE 166 (581)
T ss_pred HHHHHHHHH
Confidence 999987653
No 500
>KOG1144|consensus
Probab=98.57 E-value=1.9e-07 Score=100.22 Aligned_cols=135 Identities=17% Similarity=0.191 Sum_probs=97.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCC----CcceEecCcc-----------CC--Cce-eEEEEeCCCCCCChH
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPELVPSK----AEEITIPPDV-----------TP--EMV-PTHIVDYSEVDQTVD 72 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~----~~~~~i~~~~-----------~~--~~~-~~~i~Dt~G~~~~~~ 72 (608)
--+||+|.-.+|||-|+..+-+......-... ......+..- .. -.+ -+.++||||++.|..
T Consensus 476 PIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtn 555 (1064)
T KOG1144|consen 476 PICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTN 555 (1064)
T ss_pred ceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhh
Confidence 45899999999999999999876543321111 1111222210 01 012 278999999999999
Q ss_pred HHHHHHHhcCcEEEEEEcCC---hhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------
Q psy3301 73 ELTEEIQKAHVICLVYSVVD---DASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST----------------- 132 (608)
Q Consensus 73 ~~~~~~~~ad~iilV~d~~~---~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------------- 132 (608)
+......-||.+|+|+|+-. +++.+.+. +++ ..+.|+||+.||+|..-.-.
T Consensus 556 lRsrgsslC~~aIlvvdImhGlepqtiESi~-----lLR----~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~ 626 (1064)
T KOG1144|consen 556 LRSRGSSLCDLAILVVDIMHGLEPQTIESIN-----LLR----MRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKD 626 (1064)
T ss_pred hhhccccccceEEEEeehhccCCcchhHHHH-----HHH----hcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHH
Confidence 98889999999999999975 45555554 333 35889999999999753211
Q ss_pred --------------------------------------cccCcccCcCHHHHHHHHHHHH
Q psy3301 133 --------------------------------------VESSAKTLKNISEMFYYAQKAV 154 (608)
Q Consensus 133 --------------------------------------~e~SAk~~~~i~~lf~~l~~~i 154 (608)
+++||.+|+||.+|+.++++..
T Consensus 627 v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~lt 686 (1064)
T KOG1144|consen 627 VQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLT 686 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHH
Confidence 8999999999999998887765
Done!