Query psy3301
Match_columns 608
No_of_seqs 583 out of 4640
Neff 8.8
Searched_HMMs 29240
Date Fri Aug 16 21:32:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3301.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3301hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 99.9 2E-27 7E-32 229.7 14.3 146 9-156 12-176 (216)
2 2hjg_A GTP-binding protein ENG 99.9 2.7E-27 9.2E-32 253.8 15.1 114 10-129 3-125 (436)
3 4dcu_A GTP-binding protein ENG 99.9 6.3E-27 2.2E-31 252.4 14.2 115 8-128 21-144 (456)
4 1mky_A Probable GTP-binding pr 99.9 3.6E-25 1.2E-29 237.5 19.5 111 12-128 3-123 (439)
5 3ihw_A Centg3; RAS, centaurin, 99.9 1.1E-23 3.9E-28 198.7 16.2 144 7-156 17-180 (184)
6 1c1y_A RAS-related protein RAP 99.9 2.1E-23 7.3E-28 192.5 16.9 146 9-155 2-166 (167)
7 3q72_A GTP-binding protein RAD 99.9 1.1E-23 3.8E-28 194.5 14.8 145 10-155 2-163 (166)
8 1u8z_A RAS-related protein RAL 99.9 4.4E-23 1.5E-27 190.3 17.3 146 9-155 3-166 (168)
9 3reg_A RHO-like small GTPase; 99.9 1.5E-23 5E-28 199.4 13.0 148 8-157 21-189 (194)
10 2iwr_A Centaurin gamma 1; ANK 99.9 5.9E-23 2E-27 192.1 16.9 142 8-156 5-169 (178)
11 3kkq_A RAS-related protein M-R 99.9 4.4E-23 1.5E-27 193.9 15.9 148 7-155 15-181 (183)
12 2efe_B Small GTP-binding prote 99.9 4.8E-23 1.7E-27 193.1 15.6 150 5-156 7-175 (181)
13 1kao_A RAP2A; GTP-binding prot 99.9 6.4E-23 2.2E-27 189.0 15.9 146 9-155 2-165 (167)
14 2nzj_A GTP-binding protein REM 99.9 6.3E-23 2.1E-27 191.1 15.5 147 8-155 2-168 (175)
15 2fn4_A P23, RAS-related protei 99.9 6.4E-23 2.2E-27 192.0 15.6 151 5-156 4-172 (181)
16 4dsu_A GTPase KRAS, isoform 2B 99.9 9.5E-23 3.3E-27 192.3 16.7 147 9-156 3-166 (189)
17 2atx_A Small GTP binding prote 99.9 5.4E-23 1.8E-27 195.4 14.8 147 9-157 17-194 (194)
18 3q3j_B RHO-related GTP-binding 99.9 1.6E-23 5.3E-28 202.7 11.2 152 7-160 24-207 (214)
19 3tkl_A RAS-related protein RAB 99.9 4.8E-23 1.6E-27 195.8 14.2 149 8-158 14-181 (196)
20 2bov_A RAla, RAS-related prote 99.9 1.6E-22 5.3E-27 193.9 17.9 149 7-156 11-177 (206)
21 3q85_A GTP-binding protein REM 99.9 5.3E-23 1.8E-27 190.5 14.1 146 10-156 2-167 (169)
22 1z0f_A RAB14, member RAS oncog 99.9 9.1E-23 3.1E-27 190.5 15.9 146 8-155 13-177 (179)
23 3tw8_B RAS-related protein RAB 99.9 1.6E-23 5.4E-28 196.1 10.6 150 4-156 3-171 (181)
24 2fg5_A RAB-22B, RAS-related pr 99.9 4.3E-23 1.5E-27 195.9 13.7 152 3-156 16-186 (192)
25 1r8s_A ADP-ribosylation factor 99.9 7.8E-23 2.7E-27 188.4 15.0 141 11-155 1-161 (164)
26 2bme_A RAB4A, RAS-related prot 99.9 3.5E-23 1.2E-27 195.0 12.8 152 3-156 3-173 (186)
27 2a9k_A RAS-related protein RAL 99.9 1.6E-22 5.6E-27 190.3 17.0 147 8-155 16-180 (187)
28 3t5g_A GTP-binding protein RHE 99.9 3.1E-23 1.1E-27 194.6 11.9 150 9-159 5-172 (181)
29 1z0j_A RAB-22, RAS-related pro 99.9 6.9E-23 2.4E-27 189.7 14.1 146 8-155 4-168 (170)
30 1r2q_A RAS-related protein RAB 99.9 7E-23 2.4E-27 189.5 13.8 144 9-154 5-167 (170)
31 2fu5_C RAS-related protein RAB 99.9 9.5E-24 3.3E-28 198.5 8.0 149 6-156 4-171 (183)
32 2hup_A RAS-related protein RAB 99.9 5.7E-23 1.9E-27 196.7 13.5 147 8-156 27-193 (201)
33 3bwd_D RAC-like GTP-binding pr 99.9 2.1E-23 7.1E-28 195.8 10.2 148 8-157 6-182 (182)
34 3cbq_A GTP-binding protein REM 99.9 1.6E-22 5.5E-27 192.6 16.3 149 8-157 21-189 (195)
35 1ek0_A Protein (GTP-binding pr 99.9 8.3E-23 2.8E-27 189.0 13.8 145 9-155 2-168 (170)
36 2p5s_A RAS and EF-hand domain 99.9 1.5E-22 5E-27 193.4 15.8 148 7-156 25-197 (199)
37 3c5c_A RAS-like protein 12; GD 99.9 6.4E-23 2.2E-27 194.0 13.1 146 8-155 19-185 (187)
38 2il1_A RAB12; G-protein, GDP, 99.9 7.8E-23 2.7E-27 194.2 13.7 146 8-155 24-189 (192)
39 2hxs_A RAB-26, RAS-related pro 99.9 4.1E-23 1.4E-27 193.0 11.5 150 7-157 3-174 (178)
40 1zd9_A ADP-ribosylation factor 99.9 9.8E-23 3.4E-27 192.8 14.2 146 7-155 19-184 (188)
41 2ew1_A RAS-related protein RAB 99.9 5.5E-23 1.9E-27 196.8 12.5 147 8-156 24-189 (201)
42 1x3s_A RAS-related protein RAB 99.9 1E-22 3.5E-27 193.2 14.2 150 6-156 11-178 (195)
43 2j0v_A RAC-like GTP-binding pr 99.9 6.7E-23 2.3E-27 197.7 13.1 150 7-158 6-182 (212)
44 2ce2_X GTPase HRAS; signaling 99.9 5.3E-22 1.8E-26 182.5 18.5 146 9-155 2-164 (166)
45 3oes_A GTPase rhebl1; small GT 99.9 3.3E-23 1.1E-27 198.2 10.7 152 7-159 21-190 (201)
46 1upt_A ARL1, ADP-ribosylation 99.9 1.5E-22 5.2E-27 187.7 14.9 148 5-156 2-169 (171)
47 1m7b_A RND3/RHOE small GTP-bin 99.9 4.3E-23 1.5E-27 194.5 11.3 148 7-156 4-183 (184)
48 1fzq_A ADP-ribosylation factor 99.9 1.3E-22 4.6E-27 190.7 14.3 144 8-155 14-177 (181)
49 1z08_A RAS-related protein RAB 99.9 6.1E-23 2.1E-27 190.2 11.8 146 8-155 4-168 (170)
50 2atv_A RERG, RAS-like estrogen 99.9 2.5E-22 8.7E-27 191.2 16.3 147 8-156 26-191 (196)
51 1mh1_A RAC1; GTP-binding, GTPa 99.9 6.3E-23 2.1E-27 193.1 11.9 149 8-158 3-182 (186)
52 3dz8_A RAS-related protein RAB 99.9 3.7E-23 1.3E-27 196.2 10.0 147 8-156 21-186 (191)
53 2erx_A GTP-binding protein DI- 99.9 2.4E-22 8.3E-27 186.2 15.4 147 9-156 2-167 (172)
54 2q3h_A RAS homolog gene family 99.9 8.9E-23 3.1E-27 195.0 12.7 148 7-156 17-195 (201)
55 2oil_A CATX-8, RAS-related pro 99.9 1.7E-22 5.9E-27 191.7 14.5 147 7-155 22-187 (193)
56 2a5j_A RAS-related protein RAB 99.9 1E-22 3.6E-27 193.0 13.0 147 7-155 18-183 (191)
57 1zj6_A ADP-ribosylation factor 99.9 2.1E-22 7.3E-27 190.2 15.0 148 8-159 14-181 (187)
58 1zbd_A Rabphilin-3A; G protein 99.9 2.6E-22 8.8E-27 192.1 15.6 147 8-156 6-171 (203)
59 4gzl_A RAS-related C3 botulinu 99.9 3.6E-23 1.2E-27 198.6 9.5 145 8-154 28-203 (204)
60 1gwn_A RHO-related GTP-binding 99.9 6.1E-23 2.1E-27 197.2 11.1 151 3-155 21-203 (205)
61 2bcg_Y Protein YP2, GTP-bindin 99.9 1.5E-22 5E-27 194.4 13.7 148 7-156 5-171 (206)
62 2b6h_A ADP-ribosylation factor 99.9 1.6E-22 5.6E-27 192.1 13.8 144 8-155 27-190 (192)
63 2j1l_A RHO-related GTP-binding 99.9 1.2E-22 4E-27 196.6 12.9 147 8-156 32-209 (214)
64 1g16_A RAS-related protein SEC 99.9 1.7E-22 5.8E-27 187.0 13.4 146 9-156 2-165 (170)
65 3gj0_A GTP-binding nuclear pro 99.9 1.1E-22 3.7E-27 197.7 12.5 148 7-157 12-176 (221)
66 4dkx_A RAS-related protein RAB 99.9 1.5E-23 5.1E-28 202.6 6.3 142 408-552 12-176 (216)
67 1wms_A RAB-9, RAB9, RAS-relate 99.9 2.5E-22 8.4E-27 187.5 14.3 148 8-156 5-174 (177)
68 2g6b_A RAS-related protein RAB 99.9 3.2E-22 1.1E-26 187.3 14.9 148 7-156 7-174 (180)
69 1z2a_A RAS-related protein RAB 99.9 1.3E-22 4.6E-27 187.3 12.1 146 8-156 3-167 (168)
70 1ky3_A GTP-binding protein YPT 99.9 1.3E-22 4.5E-27 190.0 12.1 149 6-155 4-177 (182)
71 3bc1_A RAS-related protein RAB 99.9 4.1E-22 1.4E-26 188.7 15.4 149 7-156 8-185 (195)
72 1z06_A RAS-related protein RAB 99.9 2.5E-22 8.5E-27 190.0 13.5 148 7-155 17-187 (189)
73 2gf9_A RAS-related protein RAB 99.9 2.2E-22 7.5E-27 190.4 13.1 146 8-155 20-184 (189)
74 2g3y_A GTP-binding protein GEM 99.9 2.7E-22 9.1E-27 193.3 13.5 147 8-155 35-202 (211)
75 2y8e_A RAB-protein 6, GH09086P 99.9 1.9E-22 6.4E-27 188.4 12.0 145 9-155 13-176 (179)
76 3clv_A RAB5 protein, putative; 99.9 1E-21 3.4E-26 187.6 16.9 145 7-155 4-203 (208)
77 4bas_A ADP-ribosylation factor 99.9 1.8E-22 6.1E-27 192.4 11.6 147 7-156 14-189 (199)
78 2gco_A H9, RHO-related GTP-bin 99.9 2.5E-22 8.5E-27 192.2 12.7 146 9-156 24-200 (201)
79 1ksh_A ARF-like protein 2; sma 99.9 3.7E-22 1.2E-26 188.2 13.4 145 8-156 16-180 (186)
80 2o52_A RAS-related protein RAB 99.9 8.8E-23 3E-27 195.2 9.2 148 7-156 22-188 (200)
81 2gf0_A GTP-binding protein DI- 99.9 8.8E-22 3E-26 187.5 15.9 151 8-159 6-174 (199)
82 2fv8_A H6, RHO-related GTP-bin 99.9 2.4E-22 8E-27 193.3 11.9 148 9-158 24-202 (207)
83 3con_A GTPase NRAS; structural 99.9 8.5E-22 2.9E-26 186.4 15.6 148 8-156 19-183 (190)
84 4djt_A GTP-binding nuclear pro 99.9 1.9E-22 6.4E-27 195.5 10.8 151 7-159 8-178 (218)
85 1vg8_A RAS-related protein RAB 99.9 2.9E-22 9.9E-27 192.2 11.8 150 6-156 4-175 (207)
86 3t1o_A Gliding protein MGLA; G 99.9 7.3E-22 2.5E-26 187.6 14.1 145 8-156 12-192 (198)
87 3cph_A RAS-related protein SEC 99.9 5.6E-22 1.9E-26 191.1 13.5 148 7-156 17-182 (213)
88 2h57_A ADP-ribosylation factor 99.9 6.7E-22 2.3E-26 187.2 13.6 146 7-155 18-186 (190)
89 1m2o_B GTP-binding protein SAR 99.9 6.1E-22 2.1E-26 187.8 13.0 142 8-153 21-189 (190)
90 3cpj_B GTP-binding protein YPT 99.9 2.5E-22 8.5E-27 195.5 10.3 148 8-157 11-177 (223)
91 1f6b_A SAR1; gtpases, N-termin 99.9 4.1E-22 1.4E-26 190.3 11.3 143 8-154 23-197 (198)
92 2cjw_A GTP-binding protein GEM 99.9 1E-21 3.5E-26 186.6 14.0 147 8-155 4-171 (192)
93 2h17_A ADP-ribosylation factor 99.9 3.3E-22 1.1E-26 187.9 10.4 143 7-153 18-180 (181)
94 2f7s_A C25KG, RAS-related prot 99.9 3.3E-22 1.1E-26 193.6 9.6 148 8-156 23-199 (217)
95 2fh5_B SR-beta, signal recogni 99.9 2.8E-21 9.6E-26 186.6 14.8 145 8-153 5-213 (214)
96 2x77_A ADP-ribosylation factor 99.9 5.9E-22 2E-26 187.4 9.4 145 8-156 20-184 (189)
97 1moz_A ARL1, ADP-ribosylation 99.9 7.7E-22 2.6E-26 185.3 9.8 144 8-155 16-179 (183)
98 2yc2_C IFT27, small RAB-relate 99.9 5.3E-22 1.8E-26 190.3 7.5 145 9-155 19-191 (208)
99 3l0i_B RAS-related protein RAB 99.8 8.3E-23 2.8E-27 195.1 1.5 147 8-156 31-196 (199)
100 3llu_A RAS-related GTP-binding 99.8 3.8E-21 1.3E-25 183.1 11.5 144 7-154 17-195 (196)
101 2gj8_A MNME, tRNA modification 99.8 5.1E-21 1.7E-25 178.4 11.8 143 9-155 3-165 (172)
102 3o47_A ADP-ribosylation factor 99.8 3.5E-21 1.2E-25 198.3 11.6 145 8-156 163-327 (329)
103 3th5_A RAS-related C3 botulinu 99.7 1.2E-22 4E-27 194.8 0.0 145 8-154 28-203 (204)
104 2zej_A Dardarin, leucine-rich 99.8 3.6E-21 1.2E-25 181.3 7.9 144 10-156 2-178 (184)
105 2wji_A Ferrous iron transport 99.8 2.9E-20 9.9E-25 171.9 12.7 138 9-154 2-163 (165)
106 2wkq_A NPH1-1, RAS-related C3 99.8 1.6E-20 5.6E-25 193.7 11.5 149 7-157 152-331 (332)
107 2lkc_A Translation initiation 99.8 9.6E-21 3.3E-25 176.8 8.8 144 7-156 5-171 (178)
108 3dpu_A RAB family protein; roc 99.8 1.1E-19 3.7E-24 199.9 18.3 204 7-224 38-268 (535)
109 3lvq_E ARF-GAP with SH3 domain 99.8 4.4E-20 1.5E-24 201.5 13.0 146 8-157 320-485 (497)
110 2qu8_A Putative nucleolar GTP- 99.8 1.2E-19 4E-24 177.2 13.8 147 8-156 27-205 (228)
111 2wjg_A FEOB, ferrous iron tran 99.8 1.4E-19 4.6E-24 170.7 13.0 146 6-159 3-172 (188)
112 3gee_A MNME, tRNA modification 99.8 7.1E-20 2.4E-24 196.6 12.4 192 8-203 231-451 (476)
113 2cxx_A Probable GTP-binding pr 99.8 4.4E-20 1.5E-24 174.2 9.5 142 11-156 2-184 (190)
114 2dyk_A GTP-binding protein; GT 99.8 1.9E-19 6.6E-24 164.9 12.1 137 11-154 2-160 (161)
115 3geh_A MNME, tRNA modification 99.8 6.6E-20 2.2E-24 196.2 10.2 187 8-203 222-437 (462)
116 2f9l_A RAB11B, member RAS onco 99.8 4.2E-19 1.4E-23 169.3 13.4 146 9-156 4-168 (199)
117 3c5h_A Glucocorticoid receptor 99.8 3.7E-20 1.3E-24 184.0 5.5 148 7-155 16-254 (255)
118 1xzp_A Probable tRNA modificat 99.8 1.4E-19 4.9E-24 194.3 9.4 186 9-203 242-457 (482)
119 2lmt_A Calmodulin-related prot 99.8 8.3E-20 2.8E-24 165.6 6.1 143 168-358 3-145 (148)
120 3iev_A GTP-binding protein ERA 99.8 2.5E-18 8.4E-23 175.4 17.7 144 8-156 8-182 (308)
121 1svi_A GTP-binding protein YSX 99.8 5.5E-19 1.9E-23 167.5 11.4 138 8-154 21-193 (195)
122 1oix_A RAS-related protein RAB 99.8 1E-18 3.5E-23 165.6 13.0 143 10-154 29-190 (191)
123 3b1v_A Ferrous iron uptake tra 99.8 1.5E-18 5E-23 173.5 14.6 137 10-156 3-164 (272)
124 2obh_A Centrin-2; DNA repair c 99.8 2.1E-19 7.2E-24 161.9 7.6 140 171-358 2-141 (143)
125 3r7w_A Gtpase1, GTP-binding pr 99.8 4.8E-19 1.6E-23 180.7 11.1 144 9-155 2-180 (307)
126 3i5g_B Myosin regulatory light 99.8 3.1E-19 1.1E-23 162.8 8.6 142 164-358 5-146 (153)
127 3a1s_A Iron(II) transport prot 99.8 1.3E-18 4.3E-23 172.9 13.5 140 8-156 3-167 (258)
128 3r7w_B Gtpase2, GTP-binding pr 99.8 4.9E-19 1.7E-23 178.8 9.5 137 12-155 1-173 (331)
129 2lhi_A Calmodulin, serine/thre 99.8 2.2E-19 7.4E-24 167.9 6.1 143 168-359 4-146 (176)
130 3u0k_A Rcamp; fluorescent prot 99.8 3.1E-19 1E-23 183.5 7.4 150 161-358 288-437 (440)
131 3i5g_C Myosin catalytic light 99.8 2.3E-19 8E-24 164.8 4.6 146 168-360 2-151 (159)
132 3iby_A Ferrous iron transport 99.8 2.1E-18 7.3E-23 171.0 11.8 135 11-153 2-164 (256)
133 3i8s_A Ferrous iron transport 99.8 3.3E-18 1.1E-22 171.5 12.7 140 9-156 2-169 (274)
134 3pqc_A Probable GTP-binding pr 99.8 4E-18 1.4E-22 161.3 12.2 140 8-155 21-193 (195)
135 1exr_A Calmodulin; high resolu 99.7 1.8E-18 6.3E-23 156.5 9.0 144 168-359 3-146 (148)
136 1wf3_A GTP-binding protein; GT 99.7 3.7E-18 1.3E-22 173.2 11.5 143 9-155 6-172 (301)
137 4dhe_A Probable GTP-binding pr 99.7 5.6E-18 1.9E-22 164.3 11.4 145 8-159 27-214 (223)
138 1nrj_B SR-beta, signal recogni 99.7 1.1E-17 3.8E-22 161.7 13.0 120 7-131 9-136 (218)
139 3k53_A Ferrous iron transport 99.7 1.3E-17 4.6E-22 167.0 13.4 142 9-157 2-167 (271)
140 3q85_A GTP-binding protein REM 99.7 7.4E-18 2.5E-22 155.7 8.7 142 408-552 1-167 (169)
141 3fwb_A Cell division control p 99.7 1.3E-17 4.4E-22 152.6 10.2 147 165-359 13-159 (161)
142 2hjg_A GTP-binding protein ENG 99.7 9.6E-18 3.3E-22 179.5 9.8 140 9-155 174-348 (436)
143 1dtl_A Cardiac troponin C; hel 99.7 1.3E-17 4.5E-22 152.7 9.3 152 163-359 6-158 (161)
144 3q3j_B RHO-related GTP-binding 99.7 3.1E-18 1.1E-22 165.4 5.3 146 406-554 24-205 (214)
145 3cbq_A GTP-binding protein REM 99.7 6.9E-18 2.4E-22 160.5 7.4 146 406-554 20-190 (195)
146 2bl0_C Myosin regulatory light 99.7 7.9E-18 2.7E-22 150.8 7.4 140 171-359 2-141 (142)
147 2hup_A RAS-related protein RAB 99.7 7.3E-18 2.5E-22 161.1 7.3 150 403-554 23-195 (201)
148 3qrx_A Centrin; calcium-bindin 99.7 2.8E-17 9.5E-22 151.9 11.0 148 165-360 18-165 (169)
149 3ox6_A Calcium-binding protein 99.7 1.3E-17 4.6E-22 150.9 8.7 149 167-359 3-152 (153)
150 3t5g_A GTP-binding protein RHE 99.7 1.3E-17 4.4E-22 156.0 8.6 143 408-554 5-171 (181)
151 2g3y_A GTP-binding protein GEM 99.7 1.2E-17 4E-22 160.7 8.0 143 406-552 34-203 (211)
152 2ew1_A RAS-related protein RAB 99.7 1.5E-17 5.3E-22 158.8 8.3 144 406-552 23-189 (201)
153 2atx_A Small GTP binding prote 99.7 3.2E-17 1.1E-21 155.4 9.3 144 407-553 16-194 (194)
154 3q72_A GTP-binding protein RAD 99.7 2.8E-17 9.4E-22 151.3 8.2 138 409-551 2-163 (166)
155 1lnz_A SPO0B-associated GTP-bi 99.7 3E-17 1E-21 168.9 9.2 150 11-162 159-337 (342)
156 4ds7_A Calmodulin, CAM; protei 99.7 2.5E-17 8.5E-22 148.1 7.6 144 167-359 3-146 (147)
157 2a5j_A RAS-related protein RAB 99.7 4.3E-17 1.5E-21 154.2 9.6 143 406-551 18-183 (191)
158 3reg_A RHO-like small GTPase; 99.7 2.5E-17 8.7E-22 156.1 8.0 147 405-554 19-190 (194)
159 1z08_A RAS-related protein RAB 99.7 2.5E-17 8.5E-22 152.2 7.7 142 407-551 4-168 (170)
160 2jnf_A Troponin C; stretch act 99.7 2.4E-17 8.2E-22 150.5 7.2 149 167-359 5-154 (158)
161 2mys_C Myosin; muscle protein, 99.7 8.1E-17 2.8E-21 145.1 10.5 143 169-359 2-147 (149)
162 2mys_B Myosin; muscle protein, 99.7 8.8E-17 3E-21 148.2 11.0 142 167-360 17-159 (166)
163 2fu5_C RAS-related protein RAB 99.7 1.3E-17 4.5E-22 156.3 5.2 143 407-552 6-171 (183)
164 2gf9_A RAS-related protein RAB 99.7 6.7E-17 2.3E-21 152.5 10.0 144 405-551 18-184 (189)
165 3kkq_A RAS-related protein M-R 99.7 5.7E-17 1.9E-21 151.9 9.5 142 406-551 15-181 (183)
166 3tkl_A RAS-related protein RAB 99.7 7.3E-17 2.5E-21 152.8 9.9 145 407-554 14-181 (196)
167 3j04_B Myosin regulatory light 99.7 2.3E-17 7.7E-22 148.0 5.9 139 169-359 1-139 (143)
168 2nzj_A GTP-binding protein REM 99.7 5.2E-17 1.8E-21 150.7 8.5 141 408-552 3-169 (175)
169 3tw8_B RAS-related protein RAB 99.7 5.9E-17 2E-21 151.1 8.9 145 406-553 6-172 (181)
170 3oes_A GTPase rhebl1; small GT 99.7 5.5E-17 1.9E-21 154.8 8.8 149 403-554 18-189 (201)
171 1z0f_A RAB14, member RAS oncog 99.7 6.7E-17 2.3E-21 150.4 9.1 143 406-551 12-177 (179)
172 4dcu_A GTP-binding protein ENG 99.7 5.5E-17 1.9E-21 174.7 9.6 142 8-156 193-369 (456)
173 3bwd_D RAC-like GTP-binding pr 99.7 1.6E-17 5.6E-22 155.3 4.5 143 408-553 7-182 (182)
174 2ovk_C Myosin catalytic light 99.7 2.4E-17 8.2E-22 150.8 5.5 149 168-363 2-154 (159)
175 2cjw_A GTP-binding protein GEM 99.7 8.3E-17 2.8E-21 152.6 9.0 142 407-552 4-172 (192)
176 2bcg_Y Protein YP2, GTP-bindin 99.7 1.6E-16 5.6E-21 152.0 11.0 144 407-553 6-172 (206)
177 3c5c_A RAS-like protein 12; GD 99.7 2.6E-17 8.8E-22 155.3 5.2 140 407-551 19-185 (187)
178 2f2o_A Calmodulin fused with c 99.7 4.8E-17 1.6E-21 151.9 6.9 146 168-361 4-149 (179)
179 1top_A Troponin C; contractIle 99.7 1.6E-16 5.6E-21 145.3 10.3 147 168-359 13-159 (162)
180 3ihw_A Centg3; RAS, centaurin, 99.7 1E-16 3.5E-21 150.8 9.1 140 405-553 16-181 (184)
181 3sjy_A Translation initiation 99.7 4.8E-16 1.7E-20 164.6 15.4 148 7-158 5-194 (403)
182 2j0v_A RAC-like GTP-binding pr 99.7 6.3E-17 2.1E-21 155.7 7.7 145 407-554 7-182 (212)
183 3dz8_A RAS-related protein RAB 99.7 1.1E-17 3.7E-22 158.3 2.2 144 406-552 20-186 (191)
184 2bme_A RAB4A, RAS-related prot 99.7 6.9E-17 2.4E-21 151.7 7.5 143 407-552 8-173 (186)
185 1c1y_A RAS-related protein RAP 99.7 7E-17 2.4E-21 148.5 7.3 139 409-550 3-165 (167)
186 3qq5_A Small GTP-binding prote 99.7 6.5E-17 2.2E-21 170.7 8.0 140 8-156 32-196 (423)
187 2e87_A Hypothetical protein PH 99.7 2.7E-16 9.4E-21 163.8 12.6 144 8-155 165-335 (357)
188 2o52_A RAS-related protein RAB 99.7 6.7E-17 2.3E-21 154.2 7.3 144 406-552 22-188 (200)
189 1r2q_A RAS-related protein RAB 99.7 5.4E-17 1.8E-21 149.7 6.5 141 407-550 4-167 (170)
190 2g6b_A RAS-related protein RAB 99.7 2.9E-16 1E-20 146.4 11.5 145 407-554 8-176 (180)
191 1g16_A RAS-related protein SEC 99.7 1.1E-16 3.8E-21 147.6 8.5 141 408-552 2-165 (170)
192 1z0j_A RAB-22, RAS-related pro 99.7 1E-16 3.5E-21 147.9 8.2 140 408-550 5-167 (170)
193 1m45_A MLC1P, myosin light cha 99.7 1.2E-17 4.1E-22 150.8 1.8 142 175-359 4-146 (148)
194 3sjs_A URE3-BP sequence specif 99.7 1.2E-16 4.1E-21 154.9 8.9 143 164-362 40-182 (220)
195 1z06_A RAS-related protein RAB 99.7 9.3E-17 3.2E-21 151.5 7.9 143 405-550 16-186 (189)
196 2ovk_B RLC, myosin regulatory 99.7 8.3E-17 2.8E-21 146.2 7.3 143 165-360 6-148 (153)
197 2q3h_A RAS homolog gene family 99.7 4E-17 1.4E-21 155.5 5.3 147 405-554 16-197 (201)
198 2bov_A RAla, RAS-related prote 99.7 1.2E-16 4E-21 152.7 8.6 144 405-552 10-177 (206)
199 1m7b_A RND3/RHOE small GTP-bin 99.7 3.7E-17 1.3E-21 153.6 5.0 143 407-552 5-183 (184)
200 2efe_B Small GTP-binding prote 99.7 1.2E-16 4.2E-21 149.1 8.5 143 407-552 10-175 (181)
201 2fn4_A P23, RAS-related protei 99.7 8.3E-17 2.8E-21 150.1 7.3 144 407-554 7-174 (181)
202 1z2a_A RAS-related protein RAB 99.7 1E-16 3.4E-21 147.6 7.8 142 407-551 3-166 (168)
203 3cpj_B GTP-binding protein YPT 99.7 1E-16 3.5E-21 155.6 8.2 145 407-554 11-178 (223)
204 1y1x_A Leishmania major homolo 99.7 2.3E-16 7.7E-21 149.4 10.3 148 157-361 11-158 (191)
205 1wdc_C Scallop myosin; calcium 99.7 3.3E-17 1.1E-21 149.3 4.3 145 168-360 2-150 (156)
206 1kao_A RAP2A; GTP-binding prot 99.7 6.3E-17 2.1E-21 148.6 6.0 138 409-550 3-164 (167)
207 1wdc_B Scallop myosin; calcium 99.7 1.7E-16 5.8E-21 144.7 8.7 140 167-359 10-149 (156)
208 2ged_A SR-beta, signal recogni 99.7 1.9E-16 6.6E-21 149.7 9.4 118 8-130 46-171 (193)
209 2sas_A Sarcoplasmic calcium-bi 99.7 6.5E-16 2.2E-20 144.5 12.8 150 169-360 2-167 (185)
210 2hxs_A RAB-26, RAS-related pro 99.6 4.2E-17 1.4E-21 151.9 4.4 145 407-554 4-175 (178)
211 3izy_P Translation initiation 99.6 2.4E-17 8E-22 178.5 3.0 143 8-156 2-168 (537)
212 1zbd_A Rabphilin-3A; G protein 99.6 1.5E-16 5.2E-21 151.8 8.3 143 407-552 6-171 (203)
213 2oil_A CATX-8, RAS-related pro 99.6 1.7E-16 5.7E-21 150.2 8.5 144 405-551 21-187 (193)
214 2iwr_A Centaurin gamma 1; ANK 99.6 2E-16 6.9E-21 147.4 8.8 136 408-552 6-169 (178)
215 1u8z_A RAS-related protein RAL 99.6 1E-16 3.6E-21 147.3 6.6 140 408-551 3-166 (168)
216 2xtp_A GTPase IMAP family memb 99.6 4.5E-16 1.6E-20 154.8 11.6 153 8-162 20-214 (260)
217 2fg5_A RAB-22B, RAS-related pr 99.6 9.7E-17 3.3E-21 151.9 6.0 143 406-551 20-185 (192)
218 2p5s_A RAS and EF-hand domain 99.6 7.5E-17 2.6E-21 153.6 5.3 145 404-551 23-196 (199)
219 2aao_A CDPK, calcium-dependent 99.6 6.1E-16 2.1E-20 142.3 11.2 143 168-361 20-162 (166)
220 2hpk_A Photoprotein berovin; s 99.6 1.4E-16 4.8E-21 152.8 7.2 147 167-361 28-191 (208)
221 1mh1_A RAC1; GTP-binding, GTPa 99.6 1.5E-16 5.1E-21 149.2 7.1 144 408-554 4-182 (186)
222 1wms_A RAB-9, RAB9, RAS-relate 99.6 4.3E-16 1.5E-20 144.9 10.0 143 407-552 5-174 (177)
223 2lvv_A Flagellar calcium-bindi 99.6 3.8E-16 1.3E-20 152.0 10.1 143 168-360 44-198 (226)
224 1ky3_A GTP-binding protein YPT 99.6 6.4E-16 2.2E-20 144.2 11.2 143 407-551 6-177 (182)
225 2il1_A RAB12; G-protein, GDP, 99.6 9.7E-17 3.3E-21 152.0 5.6 144 406-551 23-189 (192)
226 2ccm_A Calexcitin; EF hand, ca 99.6 6.8E-16 2.3E-20 145.7 11.4 151 168-359 5-170 (191)
227 2j1l_A RHO-related GTP-binding 99.6 1.6E-16 5.5E-21 153.3 7.1 144 408-554 33-211 (214)
228 2gco_A H9, RHO-related GTP-bin 99.6 3.3E-16 1.1E-20 149.4 8.9 142 407-551 23-199 (201)
229 1ek0_A Protein (GTP-binding pr 99.6 1.3E-16 4.6E-21 147.0 5.7 139 409-550 3-167 (170)
230 3k21_A PFCDPK3, calcium-depend 99.6 3E-16 1E-20 148.5 8.3 141 168-359 45-190 (191)
231 2a9k_A RAS-related protein RAL 99.6 2.1E-16 7E-21 148.2 7.0 141 407-551 16-180 (187)
232 3bc1_A RAS-related protein RAB 99.6 5.2E-16 1.8E-20 146.4 9.7 143 407-552 9-185 (195)
233 1gwn_A RHO-related GTP-binding 99.6 9.9E-17 3.4E-21 153.7 4.6 142 407-551 26-203 (205)
234 1nya_A Calerythrin; EF-hand, m 99.6 3.5E-16 1.2E-20 145.2 8.1 148 170-360 2-164 (176)
235 3cb4_D GTP-binding protein LEP 99.6 1E-15 3.5E-20 168.2 13.0 144 9-158 3-184 (599)
236 3pm8_A PFCDPK2, calcium-depend 99.6 6.4E-17 2.2E-21 154.0 2.9 143 168-359 50-194 (197)
237 3dtp_E RLC, myosin regulatory 99.6 1.7E-16 5.7E-21 150.9 5.8 142 166-360 48-189 (196)
238 2bl0_B Myosin regulatory light 99.6 1.6E-16 5.4E-21 142.6 5.2 133 177-359 7-139 (145)
239 3cph_A RAS-related protein SEC 99.6 5.2E-16 1.8E-20 149.1 9.2 146 403-552 14-182 (213)
240 1qv0_A Obelin, OBL; photoprote 99.6 3.7E-16 1.3E-20 147.9 7.9 155 168-360 13-177 (195)
241 2atv_A RERG, RAS-like estrogen 99.6 2.5E-16 8.6E-21 149.5 6.8 140 407-551 26-190 (196)
242 4dsu_A GTPase KRAS, isoform 2B 99.6 5.6E-16 1.9E-20 145.6 9.1 140 408-552 3-166 (189)
243 2f7s_A C25KG, RAS-related prot 99.6 2.2E-16 7.5E-21 152.4 6.3 144 406-552 22-199 (217)
244 2y8e_A RAB-protein 6, GH09086P 99.6 1.9E-16 6.6E-21 147.3 5.8 140 408-550 13-175 (179)
245 1s6i_A CDPK, calcium-dependent 99.6 7.4E-17 2.5E-21 152.4 2.5 140 169-359 4-143 (188)
246 1uhk_A Aequorin 2, aequorin; E 99.6 4.7E-16 1.6E-20 146.5 7.9 155 168-360 9-173 (191)
247 2fv8_A H6, RHO-related GTP-bin 99.6 3.9E-16 1.3E-20 149.7 7.2 143 409-554 25-202 (207)
248 2ywe_A GTP-binding protein LEP 99.6 2.4E-15 8.1E-20 164.9 14.3 144 9-158 5-186 (600)
249 4gzl_A RAS-related C3 botulinu 99.6 1.8E-16 6.3E-21 151.6 4.9 142 406-550 27-203 (204)
250 1x3s_A RAS-related protein RAB 99.6 8.8E-16 3E-20 145.2 9.4 142 408-553 14-179 (195)
251 1mky_A Probable GTP-binding pr 99.6 1.9E-15 6.6E-20 161.8 13.2 140 9-155 179-354 (439)
252 2aka_B Dynamin-1; fusion prote 99.6 4.1E-15 1.4E-19 150.9 15.0 141 9-154 25-251 (299)
253 2qtf_A Protein HFLX, GTP-bindi 99.6 1.3E-15 4.6E-20 158.2 11.5 147 9-157 177-355 (364)
254 3t1o_A Gliding protein MGLA; G 99.6 2E-16 7E-21 149.7 4.5 142 407-553 12-193 (198)
255 3l0i_B RAS-related protein RAB 99.6 4.9E-17 1.7E-21 154.9 0.2 143 406-551 30-195 (199)
256 2znd_A Programmed cell death p 99.6 6.1E-16 2.1E-20 143.5 7.6 134 173-361 5-139 (172)
257 2erx_A GTP-binding protein DI- 99.6 3.8E-16 1.3E-20 144.2 6.1 142 409-554 3-169 (172)
258 3cs1_A Flagellar calcium-bindi 99.6 1.1E-15 3.7E-20 148.1 9.5 145 168-360 41-195 (219)
259 3con_A GTPase NRAS; structural 99.6 1.7E-15 5.9E-20 142.7 10.3 140 408-552 20-183 (190)
260 1q80_A SCP, sarcoplasmic calci 99.6 6.5E-16 2.2E-20 143.2 6.7 147 171-359 2-155 (174)
261 3lxw_A GTPase IMAP family memb 99.6 3.3E-15 1.1E-19 147.3 12.1 120 7-129 18-153 (247)
262 3akb_A Putative calcium bindin 99.6 1.4E-15 4.8E-20 139.6 8.6 144 174-360 3-160 (166)
263 2ce2_X GTPase HRAS; signaling 99.6 1.6E-15 5.4E-20 138.9 8.7 138 409-551 3-164 (166)
264 1vg8_A RAS-related protein RAB 99.6 1.1E-15 3.8E-20 146.1 7.7 142 407-552 6-175 (207)
265 3tr5_A RF-3, peptide chain rel 99.6 7.8E-16 2.7E-20 167.3 7.3 118 7-130 10-149 (528)
266 1zo1_I IF2, translation initia 99.6 2.9E-16 9.9E-21 168.6 3.7 137 8-153 2-164 (501)
267 1w7j_B Myosin light chain 1; m 99.6 1.2E-16 4E-21 144.7 0.5 147 168-359 3-149 (151)
268 1alv_A Calpain, S-camld; calci 99.6 6.4E-16 2.2E-20 143.6 5.5 132 173-360 2-140 (173)
269 2yc2_C IFT27, small RAB-relate 99.6 3.4E-16 1.2E-20 149.6 3.4 143 407-552 18-192 (208)
270 3e3r_A Calcyphosin, calcyphosi 99.6 1.7E-15 5.9E-20 144.4 8.3 143 171-362 33-183 (204)
271 3sg6_A Gcamp2, myosin light ch 99.6 8.9E-16 3.1E-20 161.8 6.7 145 167-359 304-448 (450)
272 3mse_B Calcium-dependent prote 99.6 1.9E-15 6.5E-20 141.5 8.2 135 171-359 35-177 (180)
273 3ll8_B Calcineurin subunit B t 99.6 8.6E-16 2.9E-20 139.4 5.5 139 171-361 2-145 (155)
274 4djt_A GTP-binding nuclear pro 99.6 4.8E-16 1.6E-20 150.2 3.9 145 407-554 9-177 (218)
275 2zej_A Dardarin, leucine-rich 99.6 1.6E-16 5.3E-21 149.4 0.4 142 409-552 2-178 (184)
276 1ggw_A Protein (CDC4P); light 99.6 7.4E-16 2.5E-20 137.6 4.7 134 175-359 5-138 (140)
277 1s0u_A EIF-2-gamma, translatio 99.6 4.9E-15 1.7E-19 157.1 11.8 140 7-157 5-199 (408)
278 2qpt_A EH domain-containing pr 99.6 1.1E-14 3.8E-19 159.3 14.8 67 292-361 454-520 (550)
279 1wb1_A Translation elongation 99.6 1.8E-15 6.3E-20 163.3 8.4 140 8-156 17-189 (482)
280 3lxx_A GTPase IMAP family memb 99.6 3.6E-15 1.2E-19 146.4 9.7 120 8-130 27-160 (239)
281 2bec_A Calcineurin B homologou 99.6 5.7E-16 1.9E-20 147.8 3.8 160 166-361 20-184 (202)
282 3th5_A RAS-related C3 botulinu 99.4 1.6E-16 5.6E-21 151.8 0.0 142 406-550 27-203 (204)
283 3clv_A RAB5 protein, putative; 99.6 1.9E-15 6.5E-20 143.7 7.4 141 407-551 5-203 (208)
284 3j2k_7 ERF3, eukaryotic polype 99.6 7E-15 2.4E-19 157.0 12.2 137 7-148 14-217 (439)
285 4bas_A ADP-ribosylation factor 99.6 1.5E-15 5.2E-20 144.1 6.2 147 405-554 13-191 (199)
286 1ega_A Protein (GTP-binding pr 99.6 9.6E-16 3.3E-20 155.6 4.8 140 9-155 7-174 (301)
287 1upt_A ARL1, ADP-ribosylation 99.6 2.3E-15 8E-20 138.9 7.0 143 406-552 4-169 (171)
288 2gf0_A GTP-binding protein DI- 99.6 2.2E-15 7.5E-20 143.0 6.9 143 407-554 6-173 (199)
289 2wji_A Ferrous iron transport 99.6 1.3E-15 4.5E-20 140.4 5.1 138 409-550 3-163 (165)
290 1f6b_A SAR1; gtpases, N-termin 99.6 3.6E-15 1.2E-19 141.9 8.0 135 408-549 24-196 (198)
291 1zd9_A ADP-ribosylation factor 99.6 1.2E-15 4.2E-20 143.7 4.3 142 403-551 16-184 (188)
292 3p26_A Elongation factor 1 alp 99.6 3.2E-15 1.1E-19 161.9 8.1 137 8-147 31-229 (483)
293 2c78_A Elongation factor TU-A; 99.5 9.7E-15 3.3E-19 154.7 11.1 117 7-129 8-142 (405)
294 1r8s_A ADP-ribosylation factor 99.5 1.3E-15 4.6E-20 139.6 3.7 133 410-550 1-160 (164)
295 1kk1_A EIF2gamma; initiation o 99.5 7.8E-15 2.7E-19 155.7 10.0 144 7-158 7-202 (410)
296 3gj0_A GTP-binding nuclear pro 99.5 7.6E-16 2.6E-20 149.2 2.0 144 406-554 12-177 (221)
297 2f9l_A RAB11B, member RAS onco 99.5 8.4E-15 2.9E-19 139.3 8.9 142 408-552 4-168 (199)
298 1oix_A RAS-related protein RAB 99.5 8.1E-15 2.8E-19 138.6 8.5 141 407-550 27-190 (191)
299 1m2o_B GTP-binding protein SAR 99.5 4E-15 1.4E-19 140.6 6.2 133 409-549 23-189 (190)
300 1gjy_A Sorcin, CP-22, V19; cal 99.5 8.8E-15 3E-19 135.0 8.4 126 179-361 5-135 (167)
301 2h17_A ADP-ribosylation factor 99.5 2E-15 6.7E-20 141.4 4.0 136 405-549 17-180 (181)
302 3khe_A Calmodulin-like domain 99.5 1.4E-15 4.8E-20 143.3 2.5 142 170-361 35-186 (191)
303 2x77_A ADP-ribosylation factor 99.5 5.3E-15 1.8E-19 139.3 6.4 143 407-553 20-185 (189)
304 1zj6_A ADP-ribosylation factor 99.5 3.9E-15 1.3E-19 140.1 5.1 142 407-554 14-180 (187)
305 3t5d_A Septin-7; GTP-binding p 99.5 1.9E-14 6.5E-19 144.2 10.4 139 10-154 8-202 (274)
306 2ct9_A Calcium-binding protein 99.5 2.1E-15 7E-20 144.7 3.0 169 168-374 22-195 (208)
307 3llu_A RAS-related GTP-binding 99.5 2.2E-15 7.7E-20 143.0 3.2 139 405-550 16-195 (196)
308 3c5h_A Glucocorticoid receptor 99.5 9.9E-15 3.4E-19 144.7 8.0 140 406-550 16-253 (255)
309 1k94_A Grancalcin; penta-EF-ha 99.5 1E-14 3.6E-19 134.1 7.4 126 179-361 3-133 (165)
310 2qac_A Myosin A tail domain in 99.5 2.7E-15 9.1E-20 135.0 3.2 135 171-359 10-145 (146)
311 1d2e_A Elongation factor TU (E 99.5 1.1E-14 3.9E-19 153.7 8.4 141 9-155 2-194 (397)
312 2i7a_A Calpain 13; calcium-dep 99.5 5.7E-15 1.9E-19 137.4 5.2 121 184-360 13-142 (174)
313 3r7w_B Gtpase2, GTP-binding pr 99.5 1.4E-15 4.9E-20 153.5 1.2 138 411-551 1-173 (331)
314 2wkq_A NPH1-1, RAS-related C3 99.5 7.1E-15 2.4E-19 151.3 6.4 145 406-553 152-331 (332)
315 1g7s_A Translation initiation 99.5 8.8E-15 3E-19 161.0 7.3 138 9-155 4-217 (594)
316 3izq_1 HBS1P, elongation facto 99.5 1.3E-14 4.4E-19 160.6 8.7 130 8-146 165-362 (611)
317 2fh5_B SR-beta, signal recogni 99.5 2.7E-15 9.1E-20 144.4 2.8 139 408-550 6-214 (214)
318 1juo_A Sorcin; calcium-binding 99.5 3.7E-15 1.3E-19 141.7 3.6 135 169-361 27-166 (198)
319 2b6h_A ADP-ribosylation factor 99.5 3.2E-15 1.1E-19 141.5 3.2 137 406-550 26-189 (192)
320 3mwu_A Calmodulin-domain prote 99.5 1.4E-14 4.7E-19 157.6 8.4 143 170-360 326-481 (486)
321 3def_A T7I23.11 protein; chlor 99.5 2.4E-14 8.3E-19 142.5 9.4 120 8-129 34-165 (262)
322 1jny_A EF-1-alpha, elongation 99.5 5.9E-15 2E-19 157.7 5.2 138 8-147 4-204 (435)
323 3q5i_A Protein kinase; CDPK, m 99.5 1.1E-14 3.8E-19 159.0 7.5 142 170-361 350-498 (504)
324 1fzq_A ADP-ribosylation factor 99.5 9.4E-15 3.2E-19 136.8 5.9 137 407-551 14-177 (181)
325 2lkc_A Translation initiation 99.5 2.8E-14 9.6E-19 132.6 9.0 142 407-553 6-172 (178)
326 1jfj_A Ehcabp, calcium-binding 99.5 1.2E-14 4E-19 128.0 5.9 132 177-358 2-133 (134)
327 1ksh_A ARF-like protein 2; sma 99.5 4.4E-14 1.5E-18 132.5 9.7 136 407-551 16-179 (186)
328 1moz_A ARL1, ADP-ribosylation 99.5 5.8E-14 2E-18 131.2 9.9 137 407-551 16-179 (183)
329 1zun_B Sulfate adenylate trans 99.5 6.6E-14 2.2E-18 149.6 11.1 135 8-148 22-216 (434)
330 2qag_A Septin-2, protein NEDD5 99.5 1.8E-14 6.3E-19 149.8 6.6 141 10-156 37-233 (361)
331 2h57_A ADP-ribosylation factor 99.5 2.6E-14 8.8E-19 134.8 7.0 138 406-550 18-185 (190)
332 2elf_A Protein translation elo 99.5 4.4E-14 1.5E-18 147.1 9.3 128 12-155 23-179 (370)
333 2cxx_A Probable GTP-binding pr 99.5 9.5E-15 3.3E-19 137.4 3.6 139 409-554 1-186 (190)
334 1jwy_B Dynamin A GTPase domain 99.5 4.8E-13 1.6E-17 136.7 16.2 143 9-156 23-262 (315)
335 1ij5_A Plasmodial specific LAV 99.5 7.3E-15 2.5E-19 150.6 2.6 179 167-360 114-318 (323)
336 3lij_A Calcium/calmodulin depe 99.5 2.2E-14 7.7E-19 156.2 6.6 141 170-360 341-488 (494)
337 1dgu_A Calcium-saturated CIB; 99.5 1.8E-14 6.1E-19 135.0 5.0 144 164-359 9-170 (183)
338 2wjg_A FEOB, ferrous iron tran 99.5 1.1E-14 3.7E-19 136.9 3.4 142 408-553 6-170 (188)
339 3a8r_A Putative uncharacterize 99.5 2.7E-14 9.3E-19 133.5 5.8 137 174-361 27-171 (179)
340 1h65_A Chloroplast outer envel 99.5 1.3E-13 4.4E-18 137.8 11.1 119 8-129 37-168 (270)
341 1pui_A ENGB, probable GTP-bind 99.5 6.8E-14 2.3E-18 134.0 8.4 142 7-155 23-198 (210)
342 2zfd_A Calcineurin B-like prot 99.5 6.5E-14 2.2E-18 136.1 8.1 145 167-360 40-194 (226)
343 3nyv_A Calmodulin-domain prote 99.5 4.4E-14 1.5E-18 153.5 7.6 140 170-359 330-479 (484)
344 1jba_A GCAP-2, protein (guanyl 99.5 8.7E-14 3E-18 132.7 8.0 142 169-359 16-175 (204)
345 2xex_A Elongation factor G; GT 99.4 1.6E-13 5.6E-18 154.2 11.4 118 7-130 7-142 (693)
346 1r5b_A Eukaryotic peptide chai 99.4 2.1E-14 7.2E-19 154.5 3.8 120 8-129 41-195 (467)
347 2f33_A Calbindin; EF-hand, Ca2 99.4 5.1E-14 1.8E-18 139.6 6.3 146 174-359 102-259 (263)
348 3avx_A Elongation factor TS, e 99.4 8.7E-14 3E-18 159.3 8.9 145 7-157 293-487 (1289)
349 2j69_A Bacterial dynamin-like 99.4 2.4E-13 8.1E-18 153.0 12.3 144 8-156 67-325 (695)
350 3ohm_A Guanine nucleotide-bind 99.4 5.9E-14 2E-18 142.6 6.3 101 55-156 165-318 (327)
351 3t34_A Dynamin-related protein 99.4 5.9E-13 2E-17 138.8 13.8 136 10-149 34-254 (360)
352 3dd4_A KV channel-interacting 99.4 1.9E-13 6.4E-18 133.1 9.4 141 169-359 61-213 (229)
353 3o47_A ADP-ribosylation factor 99.4 1E-13 3.4E-18 142.5 7.7 139 405-551 161-326 (329)
354 1s6c_A KV4 potassium channel-i 99.4 1.3E-13 4.4E-18 129.0 7.6 143 168-360 14-168 (183)
355 2ehb_A Calcineurin B-like prot 99.4 8.5E-14 2.9E-18 133.1 6.4 144 168-360 30-183 (207)
356 3pqc_A Probable GTP-binding pr 99.4 6.8E-14 2.3E-18 131.9 5.2 140 407-550 21-192 (195)
357 1dar_A EF-G, elongation factor 99.4 6.6E-13 2.3E-17 149.3 14.0 118 7-130 9-144 (691)
358 2dyk_A GTP-binding protein; GT 99.4 4.4E-14 1.5E-18 128.9 3.6 135 409-550 1-160 (161)
359 2l4h_A Calcium and integrin-bi 99.4 4.4E-14 1.5E-18 136.1 3.7 140 168-359 44-201 (214)
360 1f60_A Elongation factor EEF1A 99.4 7.8E-14 2.7E-18 149.7 5.6 117 8-129 5-159 (458)
361 4fid_A G protein alpha subunit 99.4 2.5E-13 8.5E-18 138.5 8.9 100 54-154 158-274 (340)
362 2f33_A Calbindin; EF-hand, Ca2 99.4 2.8E-14 9.5E-19 141.5 1.8 153 168-360 9-175 (263)
363 2rdo_7 EF-G, elongation factor 99.4 3.5E-12 1.2E-16 143.6 19.0 118 7-130 7-149 (704)
364 3mca_A HBS1, elongation factor 99.4 2E-14 7E-19 158.6 0.4 129 7-144 174-371 (592)
365 2x2e_A Dynamin-1; nitration, h 99.4 9.2E-13 3.2E-17 136.8 12.6 140 9-153 30-255 (353)
366 1s1e_A KV channel interacting 99.4 3.2E-13 1.1E-17 131.0 8.3 142 169-360 48-201 (224)
367 1svi_A GTP-binding protein YSX 99.4 7.5E-14 2.6E-18 131.9 3.2 141 407-550 21-193 (195)
368 2h5e_A Peptide chain release f 99.4 3.7E-13 1.3E-17 146.5 8.2 137 8-150 11-189 (529)
369 3dpu_A RAB family protein; roc 99.4 1.3E-13 4.4E-18 151.5 4.4 145 406-554 38-210 (535)
370 2r2i_A Guanylyl cyclase-activa 99.4 1.5E-13 5E-18 130.5 4.2 138 173-359 12-158 (198)
371 2hps_A Coelenterazine-binding 99.4 2.8E-14 9.6E-19 133.8 -1.1 144 168-360 7-166 (186)
372 3r7w_A Gtpase1, GTP-binding pr 99.4 2E-13 6.8E-18 139.0 4.8 141 408-550 2-179 (307)
373 2l2e_A Calcium-binding protein 99.4 3.3E-13 1.1E-17 127.0 5.9 137 176-360 26-175 (190)
374 2be4_A Hypothetical protein LO 99.4 1.5E-13 5.2E-18 136.8 3.8 154 170-360 6-176 (272)
375 3b1v_A Ferrous iron uptake tra 99.4 1.9E-13 6.6E-18 136.3 4.0 139 409-551 3-163 (272)
376 2d8n_A Recoverin; structural g 99.4 4.3E-13 1.5E-17 128.1 6.3 137 175-359 33-184 (207)
377 2qu8_A Putative nucleolar GTP- 99.4 3E-13 1E-17 131.5 5.0 144 407-553 27-206 (228)
378 1g8i_A Frequenin, neuronal cal 99.4 3E-13 1E-17 127.2 4.6 138 175-360 25-175 (190)
379 2ggz_A Guanylyl cyclase-activa 99.3 1.2E-13 4.2E-18 132.6 1.6 138 173-359 17-162 (211)
380 3a1s_A Iron(II) transport prot 99.3 3.3E-13 1.1E-17 133.7 4.8 142 408-553 4-168 (258)
381 3bow_A Calpain-2 catalytic sub 99.3 4.3E-13 1.5E-17 151.6 5.6 137 168-360 524-668 (714)
382 2pvb_A Protein (parvalbumin); 99.3 6.5E-13 2.2E-17 112.9 5.0 103 204-359 2-107 (108)
383 1udx_A The GTP-binding protein 99.3 4.6E-12 1.6E-16 133.3 12.5 145 11-158 158-327 (416)
384 2be4_A Hypothetical protein LO 99.3 2.9E-13 1E-17 134.8 2.6 150 174-360 103-268 (272)
385 1bjf_A Neurocalcin delta; calc 99.3 1.7E-12 5.7E-17 122.4 7.6 136 175-359 25-174 (193)
386 3fs7_A Parvalbumin, thymic; ca 99.3 7.7E-13 2.6E-17 112.7 4.6 103 205-359 3-108 (109)
387 2dy1_A Elongation factor G; tr 99.3 7.4E-12 2.5E-16 140.3 13.9 116 7-128 6-139 (665)
388 3lvq_E ARF-GAP with SH3 domain 99.3 3E-12 1E-16 139.4 10.3 139 406-552 319-484 (497)
389 1pva_A Parvalbumin; calcium bi 99.3 6.1E-13 2.1E-17 113.4 3.4 104 204-359 2-108 (110)
390 2qnr_A Septin-2, protein NEDD5 99.3 2.6E-12 8.7E-17 130.2 8.0 142 10-157 18-215 (301)
391 3p32_A Probable GTPase RV1496/ 99.3 1.2E-12 4.3E-17 135.9 5.3 89 55-156 170-284 (355)
392 2jul_A Calsenilin; EF-hand, ca 99.3 1.7E-12 5.8E-17 128.6 5.9 142 169-360 88-241 (256)
393 1bu3_A Calcium-binding protein 99.3 8.2E-13 2.8E-17 112.5 2.8 103 205-359 3-108 (109)
394 1fpw_A Yeast frequenin, calciu 99.3 8E-13 2.7E-17 124.2 2.9 137 176-360 26-175 (190)
395 3vqt_A RF-3, peptide chain rel 99.3 2.2E-11 7.4E-16 133.1 13.7 116 9-130 30-167 (548)
396 2gj8_A MNME, tRNA modification 99.3 2.9E-12 9.9E-17 118.8 5.6 133 408-550 3-164 (172)
397 2www_A Methylmalonic aciduria 99.3 7.6E-12 2.6E-16 129.4 9.3 134 9-155 73-278 (349)
398 1rro_A RAT oncomodulin; calciu 99.3 1.5E-12 5E-17 110.7 3.1 103 205-359 2-107 (108)
399 1rwy_A Parvalbumin alpha; EF-h 99.2 8.7E-13 3E-17 112.2 0.5 103 205-359 2-107 (109)
400 3k53_A Ferrous iron transport 99.2 2E-12 6.9E-17 129.2 3.2 141 409-553 3-167 (271)
401 3iby_A Ferrous iron transport 99.2 1.9E-12 6.5E-17 128.0 2.9 136 410-549 2-164 (256)
402 1wxq_A GTP-binding protein; st 99.2 2.2E-12 7.5E-17 135.4 2.6 83 11-93 1-114 (397)
403 1djx_A PLC-D1, phosphoinositid 99.2 1.3E-12 4.3E-17 144.6 0.3 132 174-358 10-147 (624)
404 2kyc_A Parvalbumin-3, parvalbu 99.2 1.3E-12 4.5E-17 111.0 0.3 103 205-359 2-107 (108)
405 1n0u_A EF-2, elongation factor 99.2 1.4E-11 4.8E-16 141.4 8.7 114 9-128 18-163 (842)
406 4dhe_A Probable GTP-binding pr 99.2 4.8E-12 1.6E-16 122.2 4.1 146 407-554 27-213 (223)
407 5pal_A Parvalbumin; calcium-bi 99.2 3.1E-12 1.1E-16 108.8 2.3 103 205-359 2-107 (109)
408 2qag_C Septin-7; cell cycle, c 99.2 8.5E-12 2.9E-16 131.3 6.0 141 10-155 31-226 (418)
409 2xtz_A Guanine nucleotide-bind 99.2 1.4E-11 4.7E-16 127.1 6.7 72 55-127 181-262 (354)
410 3i8s_A Ferrous iron transport 99.2 1.4E-12 4.8E-17 130.5 -0.9 141 409-553 3-170 (274)
411 2lv7_A Calcium-binding protein 99.2 1.4E-11 4.8E-16 103.0 5.1 71 287-357 27-97 (100)
412 1cip_A Protein (guanine nucleo 99.2 1.5E-11 5E-16 126.9 6.1 102 54-156 190-344 (353)
413 3iev_A GTP-binding protein ERA 99.2 5.2E-11 1.8E-15 121.1 9.9 143 406-551 7-181 (308)
414 1qxp_A MU-like calpain; M-calp 99.2 5.9E-12 2E-16 146.6 3.0 131 174-360 533-670 (900)
415 3h4s_E KCBP interacting Ca2+-b 99.2 3.9E-12 1.3E-16 112.9 1.1 101 214-361 5-106 (135)
416 1sjj_A Actinin; 3-helix bundle 99.2 1.3E-11 4.3E-16 143.6 5.4 137 167-359 717-858 (863)
417 1u0l_A Probable GTPase ENGC; p 99.2 2.5E-12 8.7E-17 130.3 -0.7 119 25-152 32-169 (301)
418 3zvr_A Dynamin-1; hydrolase, D 99.2 2E-10 6.9E-15 128.3 14.3 140 9-153 50-275 (772)
419 1nrj_B SR-beta, signal recogni 99.1 5.2E-12 1.8E-16 121.6 1.1 133 407-544 10-174 (218)
420 4a9a_A Ribosome-interacting GT 99.1 1.6E-10 5.5E-15 119.5 11.8 114 10-128 72-195 (376)
421 1qxp_A MU-like calpain; M-calp 99.1 1.7E-10 5.7E-15 134.4 12.6 173 174-361 606-868 (900)
422 3j25_A Tetracycline resistance 99.1 6.1E-11 2.1E-15 132.2 8.5 115 10-130 2-134 (638)
423 1azs_C GS-alpha; complex (lyas 99.1 2.9E-11 9.9E-16 126.1 5.5 74 54-128 214-297 (402)
424 1zcb_A G alpha I/13; GTP-bindi 99.1 3.2E-11 1.1E-15 124.8 5.3 102 53-155 197-352 (362)
425 3gee_A MNME, tRNA modification 99.1 6E-11 2E-15 127.3 7.4 142 407-554 231-401 (476)
426 2zkm_X 1-phosphatidylinositol- 99.1 4E-11 1.4E-15 135.9 6.0 136 173-359 144-296 (799)
427 1jal_A YCHF protein; nucleotid 99.1 3.2E-10 1.1E-14 116.6 11.9 83 10-92 2-108 (363)
428 4fn5_A EF-G 1, elongation fact 99.1 1E-09 3.4E-14 124.1 16.7 131 8-155 11-166 (709)
429 2wsm_A Hydrogenase expression/ 99.1 1.3E-11 4.5E-16 119.1 0.5 135 9-156 29-214 (221)
430 2d8n_A Recoverin; structural g 99.1 2E-10 6.8E-15 109.4 7.7 130 183-361 7-136 (207)
431 1wf3_A GTP-binding protein; GT 99.1 6.2E-11 2.1E-15 119.9 4.0 136 409-550 7-171 (301)
432 2p67_A LAO/AO transport system 99.0 6.8E-11 2.3E-15 122.0 3.9 88 55-155 147-260 (341)
433 1bjf_A Neurocalcin delta; calc 99.0 4.2E-10 1.4E-14 105.7 8.5 127 175-349 63-193 (193)
434 3qq5_A Small GTP-binding prote 99.0 2.6E-11 8.9E-16 127.9 -0.2 142 407-553 32-197 (423)
435 1yrb_A ATP(GTP)binding protein 99.0 3E-10 1E-14 112.5 7.3 98 56-155 108-256 (262)
436 2ged_A SR-beta, signal recogni 99.0 1.4E-10 4.9E-15 109.0 3.9 102 407-512 46-173 (193)
437 1iq3_A Ralbp1-interacting prot 99.0 1.8E-10 6.1E-15 98.0 3.9 72 288-361 14-85 (110)
438 3ohm_A Guanine nucleotide-bind 99.0 1.2E-10 4.1E-15 118.3 3.1 96 456-554 172-320 (327)
439 3geh_A MNME, tRNA modification 99.0 2.2E-10 7.6E-15 122.4 4.1 139 407-554 222-386 (462)
440 2hf9_A Probable hydrogenase ni 99.0 1.3E-10 4.6E-15 112.3 2.1 40 116-155 165-223 (226)
441 2dby_A GTP-binding protein; GD 99.0 1.3E-09 4.3E-14 112.9 9.3 82 11-92 2-111 (368)
442 1ega_A Protein (GTP-binding pr 98.9 5.1E-10 1.7E-14 113.3 5.8 138 410-550 9-173 (301)
443 2qag_A Septin-2, protein NEDD5 98.9 1.6E-10 5.4E-15 120.1 1.9 139 408-551 36-232 (361)
444 1c07_A Protein (epidermal grow 98.9 2.2E-10 7.6E-15 94.8 2.1 69 290-360 4-72 (95)
445 3nso_A Protein S100-A3; EF-han 98.9 2.2E-10 7.6E-15 95.5 2.0 67 294-360 8-81 (101)
446 1xzp_A Probable tRNA modificat 98.9 6.7E-10 2.3E-14 119.2 6.3 135 408-551 242-404 (482)
447 2e87_A Hypothetical protein PH 98.9 1.7E-09 5.8E-14 112.3 9.1 139 407-550 165-334 (357)
448 2hf9_A Probable hydrogenase ni 98.9 5E-10 1.7E-14 108.3 4.6 142 407-550 36-222 (226)
449 2ktg_A Calmodulin, putative; e 98.9 3.1E-10 1.1E-14 91.6 2.1 73 288-360 6-78 (85)
450 2i7a_A Calpain 13; calcium-dep 98.9 4.1E-09 1.4E-13 97.6 9.9 90 175-321 76-170 (174)
451 2lv7_A Calcium-binding protein 98.9 2.2E-09 7.4E-14 89.6 7.2 73 165-244 26-98 (100)
452 4drw_A Protein S100-A10/annexi 98.9 3.1E-09 1.1E-13 91.4 8.1 72 169-247 9-84 (121)
453 1fi6_A EH domain protein REPS1 98.9 2.3E-10 8E-15 94.1 0.7 70 290-361 3-72 (92)
454 3lxx_A GTPase IMAP family memb 98.9 6.9E-10 2.4E-14 108.5 4.0 144 406-552 26-214 (239)
455 2kgr_A Intersectin-1; structur 98.9 5.4E-10 1.8E-14 95.3 2.8 74 286-361 4-77 (111)
456 2znd_A Programmed cell death p 98.9 4.2E-09 1.4E-13 97.0 8.9 63 175-244 74-136 (172)
457 2pmy_A RAS and EF-hand domain- 98.9 3.2E-10 1.1E-14 93.0 0.9 72 286-359 17-88 (91)
458 3a4u_B Multiple coagulation fa 98.9 2.9E-10 1E-14 101.8 0.7 101 215-358 30-142 (143)
459 2opo_A Polcalcin CHE A 3; calc 98.9 6E-10 2E-14 90.1 2.2 73 288-361 3-75 (86)
460 1avs_A Troponin C; muscle cont 98.9 6.9E-10 2.4E-14 90.7 2.6 74 288-361 12-85 (90)
461 2ggz_A Guanylyl cyclase-activa 98.9 1.1E-08 3.6E-13 97.9 11.3 135 171-361 53-187 (211)
462 2joj_A Centrin protein; N-term 98.8 3.3E-10 1.1E-14 89.5 0.3 71 290-360 1-71 (77)
463 1k94_A Grancalcin; penta-EF-ha 98.8 4.3E-09 1.5E-13 96.2 7.8 92 175-324 70-161 (165)
464 3n22_A Protein S100-A2; EF-han 98.8 7.5E-10 2.6E-14 92.0 2.4 68 293-360 8-82 (98)
465 2lnk_A Protein S100-A4; EF-han 98.8 1.2E-09 4.3E-14 92.9 3.8 69 292-360 18-93 (113)
466 1alv_A Calpain, S-camld; calci 98.8 3.2E-09 1.1E-13 97.9 6.7 48 298-352 115-162 (173)
467 1s6j_A CDPK, calcium-dependent 98.8 1.4E-10 4.9E-15 94.0 -2.4 63 296-358 23-85 (87)
468 4drw_A Protein S100-A10/annexi 98.8 1.6E-09 5.4E-14 93.3 4.0 70 292-362 11-85 (121)
469 4eto_A Protein S100-A4; calciu 98.8 1.1E-09 3.7E-14 90.1 2.8 68 294-361 8-82 (93)
470 1eh2_A EPS15; calcium binding, 98.8 1.3E-09 4.4E-14 91.9 3.3 70 289-361 8-77 (106)
471 2l2e_A Calcium-binding protein 98.8 4E-09 1.4E-13 98.7 7.0 125 187-360 3-127 (190)
472 1j7q_A CAVP, calcium vector pr 98.8 1.6E-09 5.4E-14 87.6 3.6 72 288-360 6-80 (86)
473 3zwh_A Protein S100-A4; Ca-bin 98.8 1.3E-09 4.5E-14 91.4 3.2 68 294-361 11-85 (104)
474 3izy_P Translation initiation 98.8 6.5E-10 2.2E-14 120.3 1.5 143 410-554 5-170 (537)
475 1lnz_A SPO0B-associated GTP-bi 98.8 1.1E-09 3.9E-14 112.3 3.0 139 409-553 158-331 (342)
476 2jjz_A Ionized calcium-binding 98.8 6.1E-09 2.1E-13 93.9 7.5 68 171-245 46-113 (150)
477 1y1x_A Leishmania major homolo 98.8 1.4E-08 4.7E-13 95.4 10.0 63 175-244 93-155 (191)
478 1gjy_A Sorcin, CP-22, V19; cal 98.8 3.9E-09 1.3E-13 96.8 6.1 91 175-323 72-162 (167)
479 1yx7_A Calsensin, LAN3-6 antig 98.8 1.6E-09 5.5E-14 86.8 2.9 63 295-357 6-74 (83)
480 1qjt_A EH1, epidermal growth f 98.8 9.1E-10 3.1E-14 91.8 1.5 65 295-361 10-74 (99)
481 1pui_A ENGB, probable GTP-bind 98.8 1.4E-09 4.9E-14 103.7 2.9 142 407-550 24-197 (210)
482 2qm8_A GTPase/ATPase; G protei 98.8 6.5E-09 2.2E-13 106.8 7.7 134 8-154 53-259 (337)
483 1fpw_A Yeast frequenin, calciu 98.8 7.3E-09 2.5E-13 96.9 7.4 125 187-360 3-127 (190)
484 2qtf_A Protein HFLX, GTP-bindi 98.8 2.5E-09 8.7E-14 110.8 4.5 142 411-554 181-356 (364)
485 2qnr_A Septin-2, protein NEDD5 98.8 1.5E-09 5E-14 109.9 2.6 57 494-552 154-214 (301)
486 3rm1_A Protein S100-B; alpha-h 98.8 2.1E-09 7.3E-14 88.3 3.0 68 294-362 7-82 (92)
487 2h2k_A Protein S100-A13; calci 98.8 3.3E-09 1.1E-13 89.3 4.2 73 287-360 14-90 (106)
488 1j55_A S-100P protein; metal b 98.8 2.2E-09 7.4E-14 88.8 2.9 68 294-361 7-81 (95)
489 2aka_B Dynamin-1; fusion prote 98.8 1.2E-09 4E-14 110.5 1.4 29 407-435 24-52 (299)
490 2b1u_A Calmodulin-like protein 98.8 1.2E-09 4.1E-14 84.6 1.1 65 295-359 5-69 (71)
491 2kn2_A Calmodulin; S MAPK phos 98.8 1.9E-09 6.4E-14 88.4 2.2 72 291-362 4-75 (92)
492 1tiz_A Calmodulin-related prot 98.7 1.6E-09 5.4E-14 82.8 1.2 64 297-360 2-65 (67)
493 2ohf_A Protein OLA1, GTP-bindi 98.7 9.1E-09 3.1E-13 106.8 7.0 92 7-98 19-134 (396)
494 2kz2_A Calmodulin, CAM; TR2C, 98.7 2.5E-09 8.4E-14 88.3 2.3 65 295-359 28-92 (94)
495 1s0u_A EIF-2-gamma, translatio 98.7 1.1E-08 3.6E-13 108.3 7.7 145 408-554 7-200 (408)
496 2y5i_A S100Z, S100 calcium bin 98.7 2.3E-09 7.9E-14 89.3 1.7 68 294-361 8-82 (99)
497 1juo_A Sorcin; calcium-binding 98.7 9.1E-09 3.1E-13 97.2 6.1 91 175-323 103-193 (198)
498 3nxa_A Protein S100-A16; S100 98.7 7.2E-09 2.5E-13 86.3 4.7 69 294-362 9-85 (100)
499 1kk1_A EIF2gamma; initiation o 98.7 8E-09 2.7E-13 109.3 5.9 146 407-554 8-202 (410)
500 1cb1_A Calbindin D9K; calcium- 98.7 7.4E-09 2.5E-13 81.7 4.2 67 295-361 6-76 (78)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.95 E-value=2e-27 Score=229.72 Aligned_cols=146 Identities=23% Similarity=0.378 Sum_probs=120.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcc--eEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEE
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEE--ITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICL 86 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iil 86 (608)
+.+||+|+|++|||||||++||+.+.|...+.++... ......+....+.+.||||+|+++|......+++.++++++
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~il 91 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVV 91 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEE
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEE
Confidence 5789999999999999999999999998887766532 23344456677899999999999999999999999999999
Q ss_pred EEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHH
Q psy3301 87 VYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYY 149 (608)
Q Consensus 87 V~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~ 149 (608)
|||+++++||+.+. .|+..+.. ....++|++|||||+|+.+.+. +||||++|.||+++|+.
T Consensus 92 v~di~~~~Sf~~i~-~~~~~i~~-~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~ 169 (216)
T 4dkx_A 92 VYDITNVNSFQQTT-KWIDDVRT-ERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRR 169 (216)
T ss_dssp EEETTCHHHHHTHH-HHHHHHHH-HHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHH
T ss_pred EeecchhHHHHHHH-HHHHHHHH-hcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHH
Confidence 99999999999998 78888876 3567899999999999976543 89999999999999999
Q ss_pred HHHHHhC
Q psy3301 150 AQKAVLH 156 (608)
Q Consensus 150 l~~~i~~ 156 (608)
+++.+..
T Consensus 170 i~~~i~~ 176 (216)
T 4dkx_A 170 VAAALPG 176 (216)
T ss_dssp HHHHC--
T ss_pred HHHHHHh
Confidence 9998754
No 2
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.94 E-value=2.7e-27 Score=253.80 Aligned_cols=114 Identities=18% Similarity=0.201 Sum_probs=76.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHcCCCCCc-CCCCCcceEecCccCCCceeEEEEeCCCCC--------CChHHHHHHHHh
Q psy3301 10 NVRILLLGDRHVGKTSLILSLVSEEFPEL-VPSKAEEITIPPDVTPEMVPTHIVDYSEVD--------QTVDELTEEIQK 80 (608)
Q Consensus 10 ~~kI~lvG~~~vGKTSLi~~l~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~--------~~~~~~~~~~~~ 80 (608)
..+|+|+|.+|||||||+++|++..+... ..+..++......+...+..+.+|||+|++ .+......+++.
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 36899999999999999999999876532 222223333334455566789999999986 455566778999
Q ss_pred cCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCC
Q psy3301 81 AHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVD 129 (608)
Q Consensus 81 ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 129 (608)
||++|+|+|++++.++... .+...++ ..++|++||+||+|+..
T Consensus 83 ad~il~vvD~~~~~~~~d~--~~~~~l~----~~~~pvilv~NK~D~~~ 125 (436)
T 2hjg_A 83 ADVIIFMVNGREGVTAADE--EVAKILY----RTKKPVVLAVNKLDNTE 125 (436)
T ss_dssp CSEEEEEEETTTCSCHHHH--HHHHHHT----TCCSCEEEEEECCCC--
T ss_pred CCEEEEEEeCCCCCCHHHH--HHHHHHH----HcCCCEEEEEECccCcc
Confidence 9999999999988776542 3444444 25789999999999753
No 3
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.94 E-value=6.3e-27 Score=252.36 Aligned_cols=115 Identities=17% Similarity=0.165 Sum_probs=78.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCc-CCCCCcceEecCccCCCceeEEEEeCCC--------CCCChHHHHHHH
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPEL-VPSKAEEITIPPDVTPEMVPTHIVDYSE--------VDQTVDELTEEI 78 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~i~Dt~G--------~~~~~~~~~~~~ 78 (608)
+...+|+|+|.+|||||||+++|++..+... ..+..+.......+...+..+.+|||+| ++++......++
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 100 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 100 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence 3457999999999999999999999876532 2222344444444556677899999999 555666678889
Q ss_pred HhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCC
Q psy3301 79 QKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLV 128 (608)
Q Consensus 79 ~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 128 (608)
+.||++|+|+|+.+..+.... .+...++ ..++|+++|+||+|+.
T Consensus 101 ~~ad~il~VvD~~~~~~~~d~--~l~~~l~----~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 101 DEADVIIFMVNGREGVTAADE--EVAKILY----RTKKPVVLAVNKLDNT 144 (456)
T ss_dssp HHCSEEEEEEESSSCSCHHHH--HHHHHHT----TCCSCEEEEEECC---
T ss_pred hhCCEEEEEEeCCCCCChHHH--HHHHHHH----HcCCCEEEEEECccch
Confidence 999999999998875443332 3444444 2578999999999975
No 4
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.93 E-value=3.6e-25 Score=237.49 Aligned_cols=111 Identities=20% Similarity=0.214 Sum_probs=74.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCC-cCCCCCcceEecCccCCCceeEEEEeCCCCCCC---------hHHHHHHHHhc
Q psy3301 12 RILLLGDRHVGKTSLILSLVSEEFPE-LVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQT---------VDELTEEIQKA 81 (608)
Q Consensus 12 kI~lvG~~~vGKTSLi~~l~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~---------~~~~~~~~~~a 81 (608)
+|+|+|.+|||||||+|+|++..... ...+..++......+...+..+.+|||+|.+.. ......+++.|
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~a 82 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREA 82 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHhC
Confidence 79999999999999999999987542 122222333333344445678999999998753 34456789999
Q ss_pred CcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCC
Q psy3301 82 HVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLV 128 (608)
Q Consensus 82 d~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 128 (608)
|++++|+|++++.+.... .+...++. .++|++||+||+|+.
T Consensus 83 d~il~V~D~~~~~~~~d~--~i~~~l~~----~~~p~ilv~NK~D~~ 123 (439)
T 1mky_A 83 DLVLFVVDGKRGITKEDE--SLADFLRK----STVDTILVANKAENL 123 (439)
T ss_dssp SEEEEEEETTTCCCHHHH--HHHHHHHH----HTCCEEEEEESCCSH
T ss_pred CEEEEEEECCCCCCHHHH--HHHHHHHH----cCCCEEEEEeCCCCc
Confidence 999999999887665431 22233332 268999999999963
No 5
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.91 E-value=1.1e-23 Score=198.66 Aligned_cols=144 Identities=15% Similarity=0.186 Sum_probs=120.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEE
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICL 86 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iil 86 (608)
..+.+||+|+|++|||||||+++|+++.+...+.++.........+....+.+.||||+|++.+. +++.+|++++
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~ 91 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVF 91 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEE
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEEE
Confidence 45689999999999999999999999998877666654444444556667889999999998876 7899999999
Q ss_pred EEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCC--CC------------------cccCcccCcCHHHH
Q psy3301 87 VYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDY--ST------------------VESSAKTLKNISEM 146 (608)
Q Consensus 87 V~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~--~~------------------~e~SAk~~~~i~~l 146 (608)
|||++++.+|+.+. .|+..+.......++|++||+||+|+... .. ++|||++|.||+++
T Consensus 92 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~l 170 (184)
T 3ihw_A 92 VFSLEDEISFQTVY-NYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERV 170 (184)
T ss_dssp EEETTCHHHHHHHH-HHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHH
T ss_pred EEECcCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHH
Confidence 99999999999998 79998875322368899999999999421 11 89999999999999
Q ss_pred HHHHHHHHhC
Q psy3301 147 FYYAQKAVLH 156 (608)
Q Consensus 147 f~~l~~~i~~ 156 (608)
|.++.+.+..
T Consensus 171 f~~l~~~i~~ 180 (184)
T 3ihw_A 171 FQDVAQKVVA 180 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988753
No 6
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.90 E-value=2.1e-23 Score=192.53 Aligned_cols=146 Identities=26% Similarity=0.360 Sum_probs=122.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCc-ceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEE
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAE-EITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLV 87 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV 87 (608)
+.+||+++|++|||||||+++|+++.+...+.++.. .......+....+.+.+|||||++++...+..+++.+|++++|
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 468999999999999999999999988776555543 2233334566678899999999999999999999999999999
Q ss_pred EEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC------------------cccCcccCcCHHHHHHH
Q psy3301 88 YSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST------------------VESSAKTLKNISEMFYY 149 (608)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~------------------~e~SAk~~~~i~~lf~~ 149 (608)
||++++.+++.+. .|+..+.......++|+++|+||+|+.+... +++||++|.|++++|++
T Consensus 82 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (167)
T 1c1y_A 82 YSITAQSTFNDLQ-DLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD 160 (167)
T ss_dssp EETTCHHHHHTHH-HHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred EECCCHHHHHHHH-HHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHH
Confidence 9999999999988 6777776433456899999999999965322 88999999999999999
Q ss_pred HHHHHh
Q psy3301 150 AQKAVL 155 (608)
Q Consensus 150 l~~~i~ 155 (608)
+.+.+.
T Consensus 161 l~~~i~ 166 (167)
T 1c1y_A 161 LVRQIN 166 (167)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 988763
No 7
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.90 E-value=1.1e-23 Score=194.49 Aligned_cols=145 Identities=26% Similarity=0.255 Sum_probs=100.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEE
Q psy3301 10 NVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYS 89 (608)
Q Consensus 10 ~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d 89 (608)
.+||+++|++|||||||+++|.+..+....+...+.......+....+.+.+|||+|++.+......+++.+|++++|||
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYS 81 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEE
Confidence 58999999999999999999998776543332222223334566777889999999999999999999999999999999
Q ss_pred cCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHHHHH
Q psy3301 90 VVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYYAQK 152 (608)
Q Consensus 90 ~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~l~~ 152 (608)
++++++++.+. .|...+.......++|+++|+||+|+.+... ++|||++|.|++++|+++.+
T Consensus 82 ~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 160 (166)
T 3q72_A 82 VTDKGSFEKAS-ELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVR 160 (166)
T ss_dssp TTCHHHHHHHH-HHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHHH
T ss_pred CCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHH
Confidence 99999999998 6777666433456899999999999976543 89999999999999999998
Q ss_pred HHh
Q psy3301 153 AVL 155 (608)
Q Consensus 153 ~i~ 155 (608)
.+.
T Consensus 161 ~~~ 163 (166)
T 3q72_A 161 QIR 163 (166)
T ss_dssp HHH
T ss_pred HHH
Confidence 774
No 8
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.90 E-value=4.4e-23 Score=190.31 Aligned_cols=146 Identities=23% Similarity=0.313 Sum_probs=120.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCc-ceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEE
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAE-EITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLV 87 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV 87 (608)
+.+||+++|++|||||||+++|.++.+...+.++.. .......+....+.+.+|||||++++...+..+++.+|++++|
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence 578999999999999999999999988766555443 2233334566678899999999999999999999999999999
Q ss_pred EEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHHH
Q psy3301 88 YSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYYA 150 (608)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~l 150 (608)
||++++++++.+. .|+..+.......++|+++|+||+|+..... +++||++|.|++++|+++
T Consensus 83 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (168)
T 1u8z_A 83 FSITEMESFAATA-DFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL 161 (168)
T ss_dssp EETTCHHHHHHHH-HHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred EECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence 9999999999987 7888777543445899999999999975332 899999999999999999
Q ss_pred HHHHh
Q psy3301 151 QKAVL 155 (608)
Q Consensus 151 ~~~i~ 155 (608)
.+.+.
T Consensus 162 ~~~i~ 166 (168)
T 1u8z_A 162 MREIR 166 (168)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98875
No 9
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.90 E-value=1.5e-23 Score=199.41 Aligned_cols=148 Identities=24% Similarity=0.351 Sum_probs=125.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcc-eEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEE-ITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICL 86 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iil 86 (608)
++.+||+|+|++|||||||+++|+++.+...+.++... ......+....+.+.+|||+|++.+...+..+++.+|++++
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 100 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLL 100 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEE
Confidence 45699999999999999999999999987766555432 23333455667888999999999999888899999999999
Q ss_pred EEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC--------------------cccCcccCcCHHHH
Q psy3301 87 VYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST--------------------VESSAKTLKNISEM 146 (608)
Q Consensus 87 V~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------------------~e~SAk~~~~i~~l 146 (608)
|||++++.+++.+...|+..+.. ...++|++||+||+|+..... ++|||++|.||+++
T Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~--~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 178 (194)
T 3reg_A 101 CFAVNNRTSFDNISTKWEPEIKH--YIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEV 178 (194)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHH--HCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHH--hCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHH
Confidence 99999999999986699999984 456899999999999975311 78999999999999
Q ss_pred HHHHHHHHhCC
Q psy3301 147 FYYAQKAVLHP 157 (608)
Q Consensus 147 f~~l~~~i~~~ 157 (608)
|+++.+.+...
T Consensus 179 ~~~l~~~i~~~ 189 (194)
T 3reg_A 179 FEKSVDCIFSN 189 (194)
T ss_dssp HHHHHHHHHCS
T ss_pred HHHHHHHHHhc
Confidence 99999998754
No 10
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.90 E-value=5.9e-23 Score=192.14 Aligned_cols=142 Identities=20% Similarity=0.209 Sum_probs=113.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCC-cceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKA-EEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICL 86 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iil 86 (608)
.+.+||+++|++|||||||+++|+++.+.. +.++. ........+....+.+.+|||+|+++ ..+++.+|++++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il 78 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF 78 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence 467999999999999999999999999876 34433 33333344556678899999999887 467899999999
Q ss_pred EEEcCChhhHHHHHHhHHHHHhhh--ccCCCCcEEEEEeCcCCCC--CCC------------------cccCcccCcCHH
Q psy3301 87 VYSVVDDASIDRLSSHWLPFLRNC--LVDTCLPIVLVGNKVDLVD--YST------------------VESSAKTLKNIS 144 (608)
Q Consensus 87 V~d~~~~~s~~~~~~~~~~~i~~~--~~~~~~piilv~nK~Dl~~--~~~------------------~e~SAk~~~~i~ 144 (608)
|||++++++|+.+. .|+..+... ....++|++||+||+|+.. ... ++|||++|.||+
T Consensus 79 v~D~~~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 157 (178)
T 2iwr_A 79 VFSLEDENSFQAVS-RLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD 157 (178)
T ss_dssp EEETTCHHHHHHHH-HHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred EEECcCHHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence 99999999999998 666555432 2236889999999999942 111 899999999999
Q ss_pred HHHHHHHHHHhC
Q psy3301 145 EMFYYAQKAVLH 156 (608)
Q Consensus 145 ~lf~~l~~~i~~ 156 (608)
++|.++.+.+..
T Consensus 158 ~lf~~l~~~~~~ 169 (178)
T 2iwr_A 158 RVFQEVAQKVVT 169 (178)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988753
No 11
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.90 E-value=4.4e-23 Score=193.92 Aligned_cols=148 Identities=20% Similarity=0.330 Sum_probs=124.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcce-EecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEE
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEI-TIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVIC 85 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 85 (608)
..+.+||+|+|++|||||||+++|++..+...+.++.... .....+....+.+.+|||+|++.+...+..+++.+|+++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 94 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL 94 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 4567999999999999999999999998877765554322 333344556677889999999999988999999999999
Q ss_pred EEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcc-cCcCHHHHH
Q psy3301 86 LVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAK-TLKNISEMF 147 (608)
Q Consensus 86 lV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk-~~~~i~~lf 147 (608)
+|||++++.+|+.+. .|+..+.......++|+++|+||+|+..... ++|||+ +|.||+++|
T Consensus 95 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~ 173 (183)
T 3kkq_A 95 IVYSVTDKASFEHVD-RFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTF 173 (183)
T ss_dssp EEEETTCHHHHHTHH-HHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHH
T ss_pred EEEECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHH
Confidence 999999999999998 7888776434567899999999999976433 899999 999999999
Q ss_pred HHHHHHHh
Q psy3301 148 YYAQKAVL 155 (608)
Q Consensus 148 ~~l~~~i~ 155 (608)
..+.+.+.
T Consensus 174 ~~l~~~i~ 181 (183)
T 3kkq_A 174 HDLVRVIR 181 (183)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998774
No 12
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.90 E-value=4.8e-23 Score=193.05 Aligned_cols=150 Identities=28% Similarity=0.391 Sum_probs=122.3
Q ss_pred ccCCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCc--ceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcC
Q psy3301 5 VSLRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAE--EITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAH 82 (608)
Q Consensus 5 ~~~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad 82 (608)
......+||+|+|++|||||||+++|++..+.....++.. .......+....+.+.+|||+|++++...+..+++.+|
T Consensus 7 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 86 (181)
T 2efe_B 7 GNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 86 (181)
T ss_dssp ---CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCS
T ss_pred CCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCC
Confidence 3345679999999999999999999999988765444332 22223334556788999999999999998999999999
Q ss_pred cEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHH
Q psy3301 83 VICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISE 145 (608)
Q Consensus 83 ~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~ 145 (608)
++++|||++++.+++.+. .|+..+.. ....++|+++|+||+|+..... ++|||++|.||++
T Consensus 87 ~~i~v~d~~~~~s~~~~~-~~~~~~~~-~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 164 (181)
T 2efe_B 87 AAIIVFDVTNQASFERAK-KWVQELQA-QGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKE 164 (181)
T ss_dssp EEEEEEETTCHHHHHHHH-HHHHHHHH-HSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHH
T ss_pred EEEEEEECCCHHHHHHHH-HHHHHHHH-hcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHH
Confidence 999999999999999988 78888775 3456899999999999975432 8999999999999
Q ss_pred HHHHHHHHHhC
Q psy3301 146 MFYYAQKAVLH 156 (608)
Q Consensus 146 lf~~l~~~i~~ 156 (608)
+|+++.+.+..
T Consensus 165 l~~~l~~~~~~ 175 (181)
T 2efe_B 165 IFYEIARRLPR 175 (181)
T ss_dssp HHHHHHHTCC-
T ss_pred HHHHHHHHHHh
Confidence 99999987754
No 13
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.89 E-value=6.4e-23 Score=189.04 Aligned_cols=146 Identities=25% Similarity=0.316 Sum_probs=120.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCc-ceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEE
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAE-EITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLV 87 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV 87 (608)
+.+||+++|++|||||||+++|+++.+...+.++.. .......+....+.+.+|||||++++......+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 468999999999999999999999988776555432 2233344556667899999999999999999999999999999
Q ss_pred EEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHHH
Q psy3301 88 YSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYYA 150 (608)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~l 150 (608)
||++++.+++.+. .|...+.......++|+++|+||+|+..... ++|||++|.|++++|+++
T Consensus 82 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 160 (167)
T 1kao_A 82 YSLVNQQSFQDIK-PMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI 160 (167)
T ss_dssp EETTCHHHHHHHH-HHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred EeCCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHH
Confidence 9999999999988 6666665433446899999999999865332 899999999999999999
Q ss_pred HHHHh
Q psy3301 151 QKAVL 155 (608)
Q Consensus 151 ~~~i~ 155 (608)
.+.+.
T Consensus 161 ~~~~~ 165 (167)
T 1kao_A 161 VRQMN 165 (167)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88763
No 14
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.89 E-value=6.3e-23 Score=191.06 Aligned_cols=147 Identities=28% Similarity=0.321 Sum_probs=109.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCC-cceEecCccCCCceeEEEEeCCCCCC--ChHHHHHHHHhcCcE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKA-EEITIPPDVTPEMVPTHIVDYSEVDQ--TVDELTEEIQKAHVI 84 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~i~Dt~G~~~--~~~~~~~~~~~ad~i 84 (608)
...+||+|+|++|||||||+++|++..+....++.. +.......+....+.+.+|||+|++. +......+++.+|++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 357899999999999999999999998876544332 22223334556667899999999988 556667788899999
Q ss_pred EEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHH
Q psy3301 85 CLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMF 147 (608)
Q Consensus 85 ilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf 147 (608)
++|||++++.+|+.+. .|...+.......++|+++|+||+|+..... ++|||++|.||+++|
T Consensus 82 i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 160 (175)
T 2nzj_A 82 VIVYSIADRGSFESAS-ELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160 (175)
T ss_dssp EEEEETTCHHHHHHHH-HHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred EEEEECCCHHHHHHHH-HHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence 9999999999999998 7877776422345899999999999976432 899999999999999
Q ss_pred HHHHHHHh
Q psy3301 148 YYAQKAVL 155 (608)
Q Consensus 148 ~~l~~~i~ 155 (608)
+++.+.+.
T Consensus 161 ~~l~~~~~ 168 (175)
T 2nzj_A 161 EGVVRQLR 168 (175)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998874
No 15
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.89 E-value=6.4e-23 Score=191.97 Aligned_cols=151 Identities=23% Similarity=0.270 Sum_probs=124.4
Q ss_pred ccCCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcce-EecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCc
Q psy3301 5 VSLRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEI-TIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHV 83 (608)
Q Consensus 5 ~~~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 83 (608)
....+.+||+|+|++|||||||+++|++..+...+.++.... .....+....+.+.+|||+|++++...+..+++.+|+
T Consensus 4 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 83 (181)
T 2fn4_A 4 PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG 83 (181)
T ss_dssp CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCE
Confidence 344567999999999999999999999998877666554332 2223344556789999999999998889999999999
Q ss_pred EEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHH
Q psy3301 84 ICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEM 146 (608)
Q Consensus 84 iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~l 146 (608)
+++|||++++.+++.+. .|+..+.......++|+++|+||+|+..... ++|||++|.|++++
T Consensus 84 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 162 (181)
T 2fn4_A 84 FLLVFAINDRQSFNEVG-KLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEA 162 (181)
T ss_dssp EEEEEETTCHHHHHHHH-HHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Confidence 99999999999999998 6777664323456899999999999975432 89999999999999
Q ss_pred HHHHHHHHhC
Q psy3301 147 FYYAQKAVLH 156 (608)
Q Consensus 147 f~~l~~~i~~ 156 (608)
|+++.+.+..
T Consensus 163 ~~~l~~~~~~ 172 (181)
T 2fn4_A 163 FEQLVRAVRK 172 (181)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998854
No 16
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.89 E-value=9.5e-23 Score=192.32 Aligned_cols=147 Identities=20% Similarity=0.351 Sum_probs=121.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCc-ceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEE
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAE-EITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLV 87 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV 87 (608)
+.+||+|+|++|||||||+++|+++.+...++++.. .......+....+.+.+|||||++.+...+..+++.+|++++|
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v 82 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 82 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEE
Confidence 478999999999999999999999988776555543 2233334556677899999999999999999999999999999
Q ss_pred EEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC----------------cccCcccCcCHHHHHHHHH
Q psy3301 88 YSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST----------------VESSAKTLKNISEMFYYAQ 151 (608)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------------~e~SAk~~~~i~~lf~~l~ 151 (608)
||++++.+++.+. .|...+.......++|+++|+||+|+..... +++||++|.|++++|+++.
T Consensus 83 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 161 (189)
T 4dsu_A 83 FAINNTKSFEDIH-HYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLV 161 (189)
T ss_dssp EETTCHHHHHHHH-HHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred EECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999988 7877776544556899999999999975443 8999999999999999999
Q ss_pred HHHhC
Q psy3301 152 KAVLH 156 (608)
Q Consensus 152 ~~i~~ 156 (608)
+.+..
T Consensus 162 ~~~~~ 166 (189)
T 4dsu_A 162 REIRK 166 (189)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98853
No 17
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=5.4e-23 Score=195.41 Aligned_cols=147 Identities=27% Similarity=0.396 Sum_probs=124.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCc-ceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEE
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAE-EITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLV 87 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV 87 (608)
..+||+|+|++|||||||+++|+++.+...+.++.. .......+....+.+.+|||+|++++...+..+++.+|++++|
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 96 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLIC 96 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEE
Confidence 468999999999999999999999988776555542 2233334455668899999999999988888899999999999
Q ss_pred EEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCC------------C------------------cccCc
Q psy3301 88 YSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYS------------T------------------VESSA 137 (608)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~------------~------------------~e~SA 137 (608)
||++++++|+.+...|+..+.. ...++|++||+||+|+.... . ++|||
T Consensus 97 ~d~~~~~s~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 174 (194)
T 2atx_A 97 FSVVNPASFQNVKEEWVPELKE--YAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSA 174 (194)
T ss_dssp EETTCHHHHHHHHHTHHHHHHH--HSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCT
T ss_pred EECCCHHHHHHHHHHHHHHHHH--hCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeC
Confidence 9999999999998789998884 34589999999999997531 1 78999
Q ss_pred ccCcCHHHHHHHHHHHHhCC
Q psy3301 138 KTLKNISEMFYYAQKAVLHP 157 (608)
Q Consensus 138 k~~~~i~~lf~~l~~~i~~~ 157 (608)
++|.||+++|.++.+.+++|
T Consensus 175 ~~g~gi~~l~~~l~~~i~~p 194 (194)
T 2atx_A 175 LTQKGLKTVFDEAIIAILTP 194 (194)
T ss_dssp TTCTTHHHHHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHHHHHhcC
Confidence 99999999999999998764
No 18
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.89 E-value=1.6e-23 Score=202.75 Aligned_cols=152 Identities=20% Similarity=0.273 Sum_probs=123.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcc-eEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEE
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEE-ITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVIC 85 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 85 (608)
....+||+|+|++|||||||+++|+++.+...+.++... ......+....+.+.||||+|++++...+..+++.+|++|
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 103 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 103 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEE
Confidence 345799999999999999999999999988776665532 2333445667789999999999999888889999999999
Q ss_pred EEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCC------------CC------------------ccc
Q psy3301 86 LVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDY------------ST------------------VES 135 (608)
Q Consensus 86 lV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~------------------~e~ 135 (608)
+|||++++++|+.+...|+..+.. ...++|++||+||+|+... .. ++|
T Consensus 104 ~v~d~~~~~s~~~~~~~~~~~i~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 181 (214)
T 3q3j_B 104 LCFDISRPETVDSALKKWRTEILD--YCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEG 181 (214)
T ss_dssp EEEETTCTHHHHHHHTHHHHHHHH--HCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHH--hCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEe
Confidence 999999999999954589999984 3568999999999999752 11 799
Q ss_pred CcccCcC-HHHHHHHHHHHHhCCCCC
Q psy3301 136 SAKTLKN-ISEMFYYAQKAVLHPMAP 160 (608)
Q Consensus 136 SAk~~~~-i~~lf~~l~~~i~~~~~~ 160 (608)
||++|.| |+++|+.+.+.+.....+
T Consensus 182 SA~~g~g~v~~lf~~l~~~~~~~~~~ 207 (214)
T 3q3j_B 182 SAFTSEKSIHSIFRTASMLCLNKPSP 207 (214)
T ss_dssp CTTTCHHHHHHHHHHHHHHHHC----
T ss_pred ccCCCcccHHHHHHHHHHHHhccCcC
Confidence 9999998 999999999998765443
No 19
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.89 E-value=4.8e-23 Score=195.80 Aligned_cols=149 Identities=25% Similarity=0.358 Sum_probs=125.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceE--ecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEIT--IPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVIC 85 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 85 (608)
...+||+|+|++|||||||+++|+++.+.....++.+... ....+....+.+.||||+|++.+...+..+++.+|+++
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 93 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 93 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence 3468999999999999999999999998776555543332 23334555688999999999999999999999999999
Q ss_pred EEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHH
Q psy3301 86 LVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFY 148 (608)
Q Consensus 86 lV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~ 148 (608)
+|||++++.+++.+. .|+..+.. ....++|++||+||+|+..... ++|||++|.||+++|+
T Consensus 94 ~v~d~~~~~s~~~~~-~~~~~i~~-~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~ 171 (196)
T 3tkl_A 94 VVYDVTDQESFNNVK-QWLQEIDR-YASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFM 171 (196)
T ss_dssp EEEETTCHHHHHTHH-HHHHHHHH-HSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHH
T ss_pred EEEECcCHHHHHHHH-HHHHHHHH-hcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Confidence 999999999999998 79888875 3456899999999999976543 8999999999999999
Q ss_pred HHHHHHhCCC
Q psy3301 149 YAQKAVLHPM 158 (608)
Q Consensus 149 ~l~~~i~~~~ 158 (608)
++.+.+....
T Consensus 172 ~l~~~i~~~~ 181 (196)
T 3tkl_A 172 TMAAEIKKRM 181 (196)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHh
Confidence 9999986543
No 20
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.89 E-value=1.6e-22 Score=193.86 Aligned_cols=149 Identities=23% Similarity=0.301 Sum_probs=125.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcc-eEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEE
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEE-ITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVIC 85 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 85 (608)
..+.+||+|+|++|||||||+++|+++.+...+.++... ......+....+.+.||||+|++.+...+..+++.+|+++
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 90 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 90 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence 345789999999999999999999999887766555432 2333445566678999999999999999999999999999
Q ss_pred EEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHH
Q psy3301 86 LVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFY 148 (608)
Q Consensus 86 lV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~ 148 (608)
+|||++++.+++.+. .|+..+.......++|++||+||+|+..... +++||++|.||+++|.
T Consensus 91 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 169 (206)
T 2bov_A 91 CVFSITEMESFAATA-DFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFF 169 (206)
T ss_dssp EEEETTCHHHHHHHH-HHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHH
T ss_pred EEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHH
Confidence 999999999999987 7888877543445899999999999976432 8999999999999999
Q ss_pred HHHHHHhC
Q psy3301 149 YAQKAVLH 156 (608)
Q Consensus 149 ~l~~~i~~ 156 (608)
++.+.+..
T Consensus 170 ~l~~~i~~ 177 (206)
T 2bov_A 170 DLMREIRA 177 (206)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998854
No 21
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.89 E-value=5.3e-23 Score=190.50 Aligned_cols=146 Identities=25% Similarity=0.261 Sum_probs=108.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCC--CCcceEecCccCCCceeEEEEeCCCCCCChH-HHHHHHHhcCcEEE
Q psy3301 10 NVRILLLGDRHVGKTSLILSLVSEEFPELVPS--KAEEITIPPDVTPEMVPTHIVDYSEVDQTVD-ELTEEIQKAHVICL 86 (608)
Q Consensus 10 ~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~ad~iil 86 (608)
.+||+++|++|||||||+++|.+..+.....+ +.+.......+....+.+.+|||+|++.+.. ....+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 47999999999999999999998776544222 2222333334566678899999999998876 56677899999999
Q ss_pred EEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHH
Q psy3301 87 VYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYY 149 (608)
Q Consensus 87 V~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~ 149 (608)
|||++++++++.+. .|+..+.......++|+++|+||+|+.+... ++|||++|.|++++|++
T Consensus 82 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 160 (169)
T 3q85_A 82 VFSVTDRRSFSKVP-ETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEG 160 (169)
T ss_dssp EEETTCHHHHHTHH-HHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECCChHHHHHHH-HHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHH
Confidence 99999999999998 6777776433335899999999999974432 89999999999999999
Q ss_pred HHHHHhC
Q psy3301 150 AQKAVLH 156 (608)
Q Consensus 150 l~~~i~~ 156 (608)
+.+.+..
T Consensus 161 l~~~i~~ 167 (169)
T 3q85_A 161 AVRQIRL 167 (169)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9988754
No 22
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.89 E-value=9.1e-23 Score=190.54 Aligned_cols=146 Identities=26% Similarity=0.349 Sum_probs=122.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcc--eEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEE--ITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVIC 85 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 85 (608)
...+||+|+|++|||||||+++|++..+...+.++... ......+....+.+.+|||+|++.+...+..+++.+|+++
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEE
Confidence 45799999999999999999999999987665554322 2233345556788999999999999999999999999999
Q ss_pred EEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHH
Q psy3301 86 LVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFY 148 (608)
Q Consensus 86 lV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~ 148 (608)
+|||++++.+++.+. .|+..+.. ....++|+++|+||+|+..... ++|||++|.||+++|.
T Consensus 93 ~v~d~~~~~s~~~~~-~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 170 (179)
T 1z0f_A 93 MVYDITRRSTYNHLS-SWLTDARN-LTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFL 170 (179)
T ss_dssp EEEETTCHHHHHTHH-HHHHHHHH-HSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEeCcCHHHHHHHH-HHHHHHHH-hcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999988 78888775 3446899999999999965322 8999999999999999
Q ss_pred HHHHHHh
Q psy3301 149 YAQKAVL 155 (608)
Q Consensus 149 ~l~~~i~ 155 (608)
++.+.+.
T Consensus 171 ~l~~~i~ 177 (179)
T 1z0f_A 171 EAAKKIY 177 (179)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 9998875
No 23
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.89 E-value=1.6e-23 Score=196.13 Aligned_cols=150 Identities=25% Similarity=0.300 Sum_probs=121.3
Q ss_pred cccCCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceE--ecCccCCCceeEEEEeCCCCCCChHHHHHHHHhc
Q psy3301 4 KVSLRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEIT--IPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKA 81 (608)
Q Consensus 4 ~~~~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a 81 (608)
.......+||+|+|++|||||||+++|++..+.....++.+... ....+....+.+.+|||||++.+...+..+++.+
T Consensus 3 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 82 (181)
T 3tw8_B 3 ARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGT 82 (181)
T ss_dssp ---CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTC
T ss_pred ccccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccC
Confidence 33455679999999999999999999999988766555443322 2333445558899999999999988888899999
Q ss_pred CcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHH
Q psy3301 82 HVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNIS 144 (608)
Q Consensus 82 d~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~ 144 (608)
|++++|||++++.+++.+. .|+..+.. ...++|+++|+||+|+..... ++|||++|.||+
T Consensus 83 d~~i~v~d~~~~~s~~~~~-~~~~~~~~--~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 159 (181)
T 3tw8_B 83 HGVIVVYDVTSAESFVNVK-RWLHEINQ--NCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVE 159 (181)
T ss_dssp SEEEEEEETTCHHHHHHHH-HHHHHHHH--HCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHH
T ss_pred CEEEEEEECCCHHHHHHHH-HHHHHHHH--hCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHH
Confidence 9999999999999999997 79988874 456899999999999876432 899999999999
Q ss_pred HHHHHHHHHHhC
Q psy3301 145 EMFYYAQKAVLH 156 (608)
Q Consensus 145 ~lf~~l~~~i~~ 156 (608)
++|+++.+.+..
T Consensus 160 ~l~~~l~~~~~~ 171 (181)
T 3tw8_B 160 EMFNCITELVLR 171 (181)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998754
No 24
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=4.3e-23 Score=195.94 Aligned_cols=152 Identities=24% Similarity=0.322 Sum_probs=123.4
Q ss_pred ccccCCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcce--EecCccCCCceeEEEEeCCCCCCChHHHHHHHHh
Q psy3301 3 MKVSLRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEI--TIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQK 80 (608)
Q Consensus 3 ~~~~~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 80 (608)
+.+...+.+||+|+|++|||||||+++|+++.+...+.++.... .....+....+.+.+|||+|++++...+..+++.
T Consensus 16 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 95 (192)
T 2fg5_A 16 PRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRG 95 (192)
T ss_dssp -----CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTT
T ss_pred cccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhcc
Confidence 34445668999999999999999999999998876555544322 2233455677899999999999999989999999
Q ss_pred cCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCH
Q psy3301 81 AHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNI 143 (608)
Q Consensus 81 ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i 143 (608)
+|++++|||++++.+++.+. .|+..+.. ....++|+++|+||+|+..... ++|||++|.||
T Consensus 96 ~d~iilV~d~~~~~s~~~~~-~~~~~i~~-~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi 173 (192)
T 2fg5_A 96 SAAAVIVYDITKQDSFYTLK-KWVKELKE-HGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINI 173 (192)
T ss_dssp CSEEEEEEETTCTHHHHHHH-HHHHHHHH-HSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSH
T ss_pred CCEEEEEEeCCCHHHHHHHH-HHHHHHHH-hCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCH
Confidence 99999999999999999997 89888875 3456899999999999975322 89999999999
Q ss_pred HHHHHHHHHHHhC
Q psy3301 144 SEMFYYAQKAVLH 156 (608)
Q Consensus 144 ~~lf~~l~~~i~~ 156 (608)
+++|.++.+.+..
T Consensus 174 ~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 174 EELFQGISRQIPP 186 (192)
T ss_dssp HHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987743
No 25
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.89 E-value=7.8e-23 Score=188.39 Aligned_cols=141 Identities=16% Similarity=0.115 Sum_probs=115.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEc
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSV 90 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~ 90 (608)
+||+++|++|||||||+++|+++.+.... ++..... ..+...++.+.+|||||++++...+..+++.+|++++|||+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~-~t~~~~~--~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 77 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNV--ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 77 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCC-CCSSCCE--EEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCccc-CcCceeE--EEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEEC
Confidence 58999999999999999999998876533 3322211 12344668899999999999999899999999999999999
Q ss_pred CChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC--------------------cccCcccCcCHHHHHHHH
Q psy3301 91 VDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST--------------------VESSAKTLKNISEMFYYA 150 (608)
Q Consensus 91 ~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------------------~e~SAk~~~~i~~lf~~l 150 (608)
+++++|+.+. .|+..+.......++|+++|+||+|+..... ++|||++|.||+++|+++
T Consensus 78 ~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 156 (164)
T 1r8s_A 78 NDRERVNEAR-EELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 156 (164)
T ss_dssp TCGGGHHHHH-HHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHH
T ss_pred CCHHHHHHHH-HHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHH
Confidence 9999999988 6666655322346889999999999976522 789999999999999999
Q ss_pred HHHHh
Q psy3301 151 QKAVL 155 (608)
Q Consensus 151 ~~~i~ 155 (608)
.+.+.
T Consensus 157 ~~~i~ 161 (164)
T 1r8s_A 157 SNQLR 161 (164)
T ss_dssp HHHC-
T ss_pred HHHHh
Confidence 98764
No 26
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.89 E-value=3.5e-23 Score=194.99 Aligned_cols=152 Identities=23% Similarity=0.304 Sum_probs=124.8
Q ss_pred ccccCCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcce--EecCccCCCceeEEEEeCCCCCCChHHHHHHHHh
Q psy3301 3 MKVSLRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEI--TIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQK 80 (608)
Q Consensus 3 ~~~~~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 80 (608)
|.......+||+|+|++|||||||+++|++..+.....++.+.. .....+....+.+.+|||||++.+...+..+++.
T Consensus 3 m~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 82 (186)
T 2bme_A 3 MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRG 82 (186)
T ss_dssp -CCCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTT
T ss_pred cccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhc
Confidence 33445567999999999999999999999998877655544322 2223344555789999999999999999999999
Q ss_pred cCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCH
Q psy3301 81 AHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNI 143 (608)
Q Consensus 81 ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i 143 (608)
+|++++|||++++.+++.+. .|+..+.. ....++|+++|+||+|+..... ++|||++|.||
T Consensus 83 ~d~~i~v~d~~~~~s~~~~~-~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 160 (186)
T 2bme_A 83 AAGALLVYDITSRETYNALT-NWLTDARM-LASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENV 160 (186)
T ss_dssp CSEEEEEEETTCHHHHHTHH-HHHHHHHH-HSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred CCEEEEEEECcCHHHHHHHH-HHHHHHHH-hcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCH
Confidence 99999999999999999988 78887775 3456899999999999964322 89999999999
Q ss_pred HHHHHHHHHHHhC
Q psy3301 144 SEMFYYAQKAVLH 156 (608)
Q Consensus 144 ~~lf~~l~~~i~~ 156 (608)
+++|+++.+.+..
T Consensus 161 ~~l~~~l~~~~~~ 173 (186)
T 2bme_A 161 EEAFVQCARKILN 173 (186)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988864
No 27
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.89 E-value=1.6e-22 Score=190.25 Aligned_cols=147 Identities=23% Similarity=0.306 Sum_probs=123.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCc-ceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAE-EITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICL 86 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iil 86 (608)
.+.+||+|+|++|||||||+++|++..+...+.++.. .......+....+.+.||||+|++++...+..+++.+|++++
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 95 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEE
Confidence 4579999999999999999999999988776555443 223333455566889999999999999999999999999999
Q ss_pred EEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHH
Q psy3301 87 VYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYY 149 (608)
Q Consensus 87 V~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~ 149 (608)
|||++++.+++.+. .|+..+.......++|+++|+||+|+..... ++|||+++.||+++|++
T Consensus 96 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 174 (187)
T 2a9k_A 96 VFSITEMESFAATA-DFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFD 174 (187)
T ss_dssp EEETTCHHHHHHHH-HHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEECcCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence 99999999999998 7887777544445899999999999965322 89999999999999999
Q ss_pred HHHHHh
Q psy3301 150 AQKAVL 155 (608)
Q Consensus 150 l~~~i~ 155 (608)
+.+.+.
T Consensus 175 l~~~i~ 180 (187)
T 2a9k_A 175 LMREIR 180 (187)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998875
No 28
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.89 E-value=3.1e-23 Score=194.61 Aligned_cols=150 Identities=26% Similarity=0.230 Sum_probs=121.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcce-EecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEE
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEI-TIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLV 87 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV 87 (608)
+.+||+|+|++|||||||+++|+++.+...+.++.... .....+....+.+.+|||+|++.+......+++.+|++++|
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v 84 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILV 84 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEE
Confidence 47899999999999999999999888877766654332 22334455568899999999999988788889999999999
Q ss_pred EEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHHH
Q psy3301 88 YSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYYA 150 (608)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~l 150 (608)
||++++++++.+. .|+..+.......++|+++|+||+|+..... +++||++|.|++++|..+
T Consensus 85 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 163 (181)
T 3t5g_A 85 YSVTSIKSFEVIK-VIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 163 (181)
T ss_dssp EETTCHHHHHHHH-HHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHH
T ss_pred EECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHH
Confidence 9999999999998 6887776434456899999999999975443 899999999999999999
Q ss_pred HHHHhCCCC
Q psy3301 151 QKAVLHPMA 159 (608)
Q Consensus 151 ~~~i~~~~~ 159 (608)
.+.+.....
T Consensus 164 ~~~~~~~~~ 172 (181)
T 3t5g_A 164 ILEAEKMDG 172 (181)
T ss_dssp HHHHHTC--
T ss_pred HHHHHHhcC
Confidence 999876543
No 29
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.89 E-value=6.9e-23 Score=189.68 Aligned_cols=146 Identities=25% Similarity=0.383 Sum_probs=122.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcc--eEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEE--ITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVIC 85 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 85 (608)
.+.+||+|+|++|||||||+++|++..+...+.++... ......+....+.+.+|||||++++......+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 35689999999999999999999999987665554432 2333445566788999999999999988999999999999
Q ss_pred EEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHH
Q psy3301 86 LVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFY 148 (608)
Q Consensus 86 lV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~ 148 (608)
+|||++++.+++.+. .|+..+.. ....++|+++|+||+|+..... +++||++|.|++++|+
T Consensus 84 ~v~d~~~~~s~~~~~-~~~~~l~~-~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 161 (170)
T 1z0j_A 84 IVYDITKEETFSTLK-NWVRELRQ-HGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFI 161 (170)
T ss_dssp EEEETTCHHHHHHHH-HHHHHHHH-HSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHH
T ss_pred EEEECcCHHHHHHHH-HHHHHHHH-hCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence 999999999999987 89888875 3567899999999999975332 8999999999999999
Q ss_pred HHHHHHh
Q psy3301 149 YAQKAVL 155 (608)
Q Consensus 149 ~l~~~i~ 155 (608)
++.+.+.
T Consensus 162 ~i~~~i~ 168 (170)
T 1z0j_A 162 EISRRIP 168 (170)
T ss_dssp HHHHHCC
T ss_pred HHHHHHh
Confidence 9988763
No 30
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.89 E-value=7e-23 Score=189.49 Aligned_cols=144 Identities=28% Similarity=0.395 Sum_probs=120.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcce--EecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEE
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEI--TIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICL 86 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iil 86 (608)
+.+||+|+|++|||||||+++|+++.+.....++.... .....+....+.+.+|||||++.+...+..+++.+|++++
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV 84 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEE
Confidence 46899999999999999999999998876654443322 2233445567889999999999999999999999999999
Q ss_pred EEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHH
Q psy3301 87 VYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYY 149 (608)
Q Consensus 87 V~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~ 149 (608)
|||++++.+++.+. .|+..+.. ....++|+++|+||+|+..... +++||++|.|++++|++
T Consensus 85 v~d~~~~~s~~~~~-~~~~~~~~-~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 162 (170)
T 1r2q_A 85 VYDITNEESFARAK-NWVKELQR-QASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA 162 (170)
T ss_dssp EEETTCHHHHHHHH-HHHHHHHH-HSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEECCCHHHHHHHH-HHHHHHHH-hcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999988 78877765 3456899999999999865322 88999999999999999
Q ss_pred HHHHH
Q psy3301 150 AQKAV 154 (608)
Q Consensus 150 l~~~i 154 (608)
+.+.+
T Consensus 163 i~~~~ 167 (170)
T 1r2q_A 163 IAKKL 167 (170)
T ss_dssp HHHTS
T ss_pred HHHHH
Confidence 98865
No 31
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.89 E-value=9.5e-24 Score=198.48 Aligned_cols=149 Identities=21% Similarity=0.326 Sum_probs=94.1
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceE--ecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCc
Q psy3301 6 SLRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEIT--IPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHV 83 (608)
Q Consensus 6 ~~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 83 (608)
.....+||+|+|++|||||||+++|++..+...+.++.+... ....+....+.+.+|||+|++.+...+..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (183)
T 2fu5_C 4 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 83 (183)
T ss_dssp CCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSE
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCE
Confidence 345579999999999999999999998887654333322221 222344556889999999999998888888999999
Q ss_pred EEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHH
Q psy3301 84 ICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEM 146 (608)
Q Consensus 84 iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~l 146 (608)
+++|||++++.+++.+. .|+..+.. ....++|++||+||+|+..... ++|||++|.||+++
T Consensus 84 ~i~v~d~~~~~s~~~~~-~~~~~i~~-~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 161 (183)
T 2fu5_C 84 IMLVYDITNEKSFDNIR-NWIRNIEE-HASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENA 161 (183)
T ss_dssp EEEEEETTCHHHHHHHH-HHHHHHHH-HSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHH
T ss_pred EEEEEECcCHHHHHHHH-HHHHHHHH-hcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 99999999999999998 79888875 3456899999999999976432 89999999999999
Q ss_pred HHHHHHHHhC
Q psy3301 147 FYYAQKAVLH 156 (608)
Q Consensus 147 f~~l~~~i~~ 156 (608)
|.++.+.+..
T Consensus 162 ~~~l~~~i~~ 171 (183)
T 2fu5_C 162 FFTLARDIKA 171 (183)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988753
No 32
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.89 E-value=5.7e-23 Score=196.72 Aligned_cols=147 Identities=22% Similarity=0.322 Sum_probs=117.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcce--EecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEI--TIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVIC 85 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 85 (608)
...+||+|+|++|||||||+++|+++.+...+.++.... .....+....+.+.||||+|++++...+..+++.+|++|
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 106 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence 346899999999999999999999998876554443222 222334455688999999999999999999999999999
Q ss_pred EEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC------------------cccCcccCcCHHHHH
Q psy3301 86 LVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST------------------VESSAKTLKNISEMF 147 (608)
Q Consensus 86 lV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~------------------~e~SAk~~~~i~~lf 147 (608)
+|||++++.+|+.+. .|+..+.. ....++|++||+||+|+...+. ++|||++|.||+++|
T Consensus 107 lv~D~~~~~s~~~~~-~~~~~i~~-~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 184 (201)
T 2hup_A 107 LAYDITKRSSFLSVP-HWIEDVRK-YAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAF 184 (201)
T ss_dssp EEEETTBHHHHHTHH-HHHHHHHH-HSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHH
T ss_pred EEEECCCHHHHHHHH-HHHHHHHH-hcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHH
Confidence 999999999999998 89888875 3356899999999999975321 799999999999999
Q ss_pred HHHHHHHhC
Q psy3301 148 YYAQKAVLH 156 (608)
Q Consensus 148 ~~l~~~i~~ 156 (608)
.++.+.+..
T Consensus 185 ~~l~~~i~~ 193 (201)
T 2hup_A 185 LRVATELIM 193 (201)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998864
No 33
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.89 E-value=2.1e-23 Score=195.77 Aligned_cols=148 Identities=30% Similarity=0.442 Sum_probs=113.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCc-ceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAE-EITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICL 86 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iil 86 (608)
+..+||+++|++|||||||+++++++.+...+.++.. .......+....+.+.+|||+|++++...+..+++.+|++++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 85 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEE
Confidence 4579999999999999999999999988766555432 222233344556778899999999998888889999999999
Q ss_pred EEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCC------------C----------------cccCcc
Q psy3301 87 VYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYS------------T----------------VESSAK 138 (608)
Q Consensus 87 V~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~------------~----------------~e~SAk 138 (608)
|||++++.+++.+...|+..+.. ...++|+++|+||+|+.+.. . ++|||+
T Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 163 (182)
T 3bwd_D 86 AFSLISKASYENVSKKWIPELKH--YAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSK 163 (182)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHH--HCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHH--hCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECC
Confidence 99999999999998789999885 34589999999999985431 1 899999
Q ss_pred cCcCHHHHHHHHHHHHhCC
Q psy3301 139 TLKNISEMFYYAQKAVLHP 157 (608)
Q Consensus 139 ~~~~i~~lf~~l~~~i~~~ 157 (608)
+|.||+++|+++.+.+++|
T Consensus 164 ~~~gi~~l~~~l~~~i~~~ 182 (182)
T 3bwd_D 164 SQENVKGVFDAAIRVVLQP 182 (182)
T ss_dssp TCTTHHHHHHHHHHHHSCC
T ss_pred CCCCHHHHHHHHHHHHhcC
Confidence 9999999999999988764
No 34
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.89 E-value=1.6e-22 Score=192.64 Aligned_cols=149 Identities=25% Similarity=0.272 Sum_probs=117.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCc-CCCCC-cceEecCccCCCceeEEEEeCCCCCCChH-HHHHHHHhcCcE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPEL-VPSKA-EEITIPPDVTPEMVPTHIVDYSEVDQTVD-ELTEEIQKAHVI 84 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~-~~~~~-~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~ad~i 84 (608)
...+||+|+|++|||||||+++|++..+... .+++. +.......++...+.+.+|||+|++.+.. ....+++.+|++
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ 100 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAF 100 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEE
Confidence 3568999999999999999999986544322 22222 22222334556678899999999988765 667789999999
Q ss_pred EEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHH
Q psy3301 85 CLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMF 147 (608)
Q Consensus 85 ilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf 147 (608)
++|||++++.+|+.+. .|+..+.......++|++||+||+|+..... ++|||++|.||+++|
T Consensus 101 ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf 179 (195)
T 3cbq_A 101 LIVFSVTDRRSFSKVP-ETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 179 (195)
T ss_dssp EEEEETTCHHHHHTHH-HHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHH
T ss_pred EEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHH
Confidence 9999999999999998 7888777432335899999999999975432 899999999999999
Q ss_pred HHHHHHHhCC
Q psy3301 148 YYAQKAVLHP 157 (608)
Q Consensus 148 ~~l~~~i~~~ 157 (608)
+++.+.+...
T Consensus 180 ~~l~~~i~~~ 189 (195)
T 3cbq_A 180 EGAVRQIRLR 189 (195)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 9999988653
No 35
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.89 E-value=8.3e-23 Score=189.02 Aligned_cols=145 Identities=26% Similarity=0.391 Sum_probs=121.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcce--EecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEE
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEI--TIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICL 86 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iil 86 (608)
+.+||+++|++|||||||+++|+++.+.....++.... .....+....+.+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 36899999999999999999999998876655544322 2333455567889999999999999999999999999999
Q ss_pred EEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCC---C-----------------cccCcccCcCHHHH
Q psy3301 87 VYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYS---T-----------------VESSAKTLKNISEM 146 (608)
Q Consensus 87 V~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~---~-----------------~e~SAk~~~~i~~l 146 (608)
|||++++.+++.+. .|+..+.. ....++|+++|+||+|+.... . ++|||++|.|++++
T Consensus 82 v~d~~~~~s~~~~~-~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 159 (170)
T 1ek0_A 82 VYDVTKPQSFIKAR-HWVKELHE-QASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDV 159 (170)
T ss_dssp EEETTCHHHHHHHH-HHHHHHHH-HSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHH
T ss_pred EEecCChHHHHHHH-HHHHHHHH-hcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999988 78887775 345689999999999997541 1 89999999999999
Q ss_pred HHHHHHHHh
Q psy3301 147 FYYAQKAVL 155 (608)
Q Consensus 147 f~~l~~~i~ 155 (608)
|+++.+.+.
T Consensus 160 ~~~l~~~i~ 168 (170)
T 1ek0_A 160 FLGIGEKIP 168 (170)
T ss_dssp HHHHHTTSC
T ss_pred HHHHHHHHh
Confidence 999987653
No 36
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.89 E-value=1.5e-22 Score=193.43 Aligned_cols=148 Identities=26% Similarity=0.357 Sum_probs=115.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCc--ceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcE
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAE--EITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVI 84 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 84 (608)
..+.+||+|+|++|||||||+++|+++.+...+.++.. .......+....+.+.||||+|++.+...+..+++.+|++
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 104 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGV 104 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEE
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEE
Confidence 34579999999999999999999999988765444332 2223334556678899999999999999999999999999
Q ss_pred EEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCC------CCC-----------------cccCcccCc
Q psy3301 85 CLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVD------YST-----------------VESSAKTLK 141 (608)
Q Consensus 85 ilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~------~~~-----------------~e~SAk~~~ 141 (608)
|+|||++++.+++.+. .|+..+.. ....++|++||+||+|+.. ... ++|||++|.
T Consensus 105 ilv~d~~~~~s~~~~~-~~~~~i~~-~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~ 182 (199)
T 2p5s_A 105 LLLYDVTCEKSFLNIR-EWVDMIED-AAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGS 182 (199)
T ss_dssp EEEEETTCHHHHHTHH-HHHHHHHH-HC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCT
T ss_pred EEEEECCChHHHHHHH-HHHHHHHH-hcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCC
Confidence 9999999999999988 79888875 3445789999999999952 111 899999999
Q ss_pred CHHHHHHHHHHHHhC
Q psy3301 142 NISEMFYYAQKAVLH 156 (608)
Q Consensus 142 ~i~~lf~~l~~~i~~ 156 (608)
||+++|.++.+.+..
T Consensus 183 gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 183 NIVEAVLHLAREVKK 197 (199)
T ss_dssp THHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999998754
No 37
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.89 E-value=6.4e-23 Score=194.00 Aligned_cols=146 Identities=25% Similarity=0.392 Sum_probs=117.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcce-EecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEI-TIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICL 86 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iil 86 (608)
...+||+|+|++|||||||+++|+++.+...+.++.... .....+....+.+.||||+|++.+... ..+++.+|++++
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~il 97 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLV 97 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEEE
Confidence 457999999999999999999999999887766654322 233345666788999999999988764 679999999999
Q ss_pred EEEcCChhhHHHHHHhHHHHHhhhc--cCCCCcEEEEEeCcCCCCCCC-----------------cccCc-ccCcCHHHH
Q psy3301 87 VYSVVDDASIDRLSSHWLPFLRNCL--VDTCLPIVLVGNKVDLVDYST-----------------VESSA-KTLKNISEM 146 (608)
Q Consensus 87 V~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~piilv~nK~Dl~~~~~-----------------~e~SA-k~~~~i~~l 146 (608)
|||++++++|+.+. .|+..+.... ...++|++||+||+|+..... ++||| ++|.||+++
T Consensus 98 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~l 176 (187)
T 3c5c_A 98 VYSVDSRQSFDSSS-SYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHV 176 (187)
T ss_dssp EEETTCHHHHHHHH-HHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHH
T ss_pred EEECCCHHHHHHHH-HHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHH
Confidence 99999999999998 7988887431 136899999999999965332 89999 899999999
Q ss_pred HHHHHHHHh
Q psy3301 147 FYYAQKAVL 155 (608)
Q Consensus 147 f~~l~~~i~ 155 (608)
|..+.+.+.
T Consensus 177 f~~l~~~i~ 185 (187)
T 3c5c_A 177 FHEAVREAR 185 (187)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998875
No 38
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.89 E-value=7.8e-23 Score=194.22 Aligned_cols=146 Identities=24% Similarity=0.357 Sum_probs=116.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcce--EecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEI--TIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVIC 85 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 85 (608)
...+||+|+|++|||||||+++|+++.+.....++.+.. .....+....+.+.+|||+|++++...+..+++.+|++|
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 103 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII 103 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 456899999999999999999999998876654444322 223334555688999999999999999999999999999
Q ss_pred EEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC------------------cccCcccCcCHHHHH
Q psy3301 86 LVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST------------------VESSAKTLKNISEMF 147 (608)
Q Consensus 86 lV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~------------------~e~SAk~~~~i~~lf 147 (608)
+|||++++.+++.+. .|+..+.. ....++|++||+||+|+..... ++|||++|.||+++|
T Consensus 104 lV~D~~~~~s~~~~~-~~~~~i~~-~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 181 (192)
T 2il1_A 104 LVYDITKKETFDDLP-KWMKMIDK-YASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIF 181 (192)
T ss_dssp EEEETTCHHHHHTHH-HHHHHHHH-HSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHH
T ss_pred EEEECcCHHHHHHHH-HHHHHHHH-hcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHH
Confidence 999999999999987 79888875 3456899999999999965322 899999999999999
Q ss_pred HHHHHHHh
Q psy3301 148 YYAQKAVL 155 (608)
Q Consensus 148 ~~l~~~i~ 155 (608)
+++.+.+.
T Consensus 182 ~~l~~~i~ 189 (192)
T 2il1_A 182 LKLVDDIL 189 (192)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998875
No 39
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.89 E-value=4.1e-23 Score=192.99 Aligned_cols=150 Identities=26% Similarity=0.294 Sum_probs=119.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcc--eEecCccCC-CceeEEEEeCCCCCCChHHHHHHHHhcCc
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEE--ITIPPDVTP-EMVPTHIVDYSEVDQTVDELTEEIQKAHV 83 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~--~~i~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 83 (608)
..+.+||+|+|++|||||||+++|+++.+...+.++... ......+.. ..+.+.+|||+|++.+...+..+++.+|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 456799999999999999999999999887554443322 222222333 35889999999999999999999999999
Q ss_pred EEEEEEcCChhhHHHHHHhHHHHHhhhc-cCCCCc-EEEEEeCcCCCCCCC-----------------cccCcccCcCHH
Q psy3301 84 ICLVYSVVDDASIDRLSSHWLPFLRNCL-VDTCLP-IVLVGNKVDLVDYST-----------------VESSAKTLKNIS 144 (608)
Q Consensus 84 iilV~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~p-iilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~ 144 (608)
+++|||++++.+++.+. .|+..+.... ...+.| +++|+||+|+.+... ++|||++|.||+
T Consensus 83 ~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 161 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLE-DWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVF 161 (178)
T ss_dssp EEEEEETTCHHHHHTHH-HHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHH
T ss_pred EEEEEECCCHHHHHHHH-HHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHH
Confidence 99999999999999987 7888877421 112455 899999999975322 899999999999
Q ss_pred HHHHHHHHHHhCC
Q psy3301 145 EMFYYAQKAVLHP 157 (608)
Q Consensus 145 ~lf~~l~~~i~~~ 157 (608)
++|.++.+.+...
T Consensus 162 ~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 162 LCFQKVAAEILGI 174 (178)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988653
No 40
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.89 E-value=9.8e-23 Score=192.77 Aligned_cols=146 Identities=18% Similarity=0.160 Sum_probs=119.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEE
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICL 86 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iil 86 (608)
.++.+||+|+|++|||||||+++|+++.+...+.++...... .+...++.+.||||+|++++...+..+++.+|++|+
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 96 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVY 96 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEE
Confidence 456799999999999999999999999887655554433322 234567899999999999988888999999999999
Q ss_pred EEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC--------------------cccCcccCcCHHHH
Q psy3301 87 VYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST--------------------VESSAKTLKNISEM 146 (608)
Q Consensus 87 V~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------------------~e~SAk~~~~i~~l 146 (608)
|||++++++++.+. .|+..+.......++|++||+||+|+..... ++|||++|.||+++
T Consensus 97 v~D~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l 175 (188)
T 1zd9_A 97 MVDAADQEKIEASK-NELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDIT 175 (188)
T ss_dssp EEETTCGGGHHHHH-HHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred EEECCCHHHHHHHH-HHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHH
Confidence 99999999999988 5555554212346899999999999975421 79999999999999
Q ss_pred HHHHHHHHh
Q psy3301 147 FYYAQKAVL 155 (608)
Q Consensus 147 f~~l~~~i~ 155 (608)
|+++.+.+.
T Consensus 176 ~~~l~~~~~ 184 (188)
T 1zd9_A 176 LQWLIQHSK 184 (188)
T ss_dssp HHHHHHTCC
T ss_pred HHHHHHHHH
Confidence 999988764
No 41
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=5.5e-23 Score=196.84 Aligned_cols=147 Identities=24% Similarity=0.323 Sum_probs=122.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceE--ecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEIT--IPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVIC 85 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 85 (608)
...+||+|+|++|||||||+++|+++.+.....++.+... ....+....+.+.+|||+|++++......+++.+|+++
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 4468999999999999999999999988766555443222 23334555688999999999999988899999999999
Q ss_pred EEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHH
Q psy3301 86 LVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFY 148 (608)
Q Consensus 86 lV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~ 148 (608)
+|||++++.+|+.+. .|+..+.. ....++|+++|+||+|+..... ++|||++|.||+++|.
T Consensus 104 ~v~D~~~~~s~~~~~-~~~~~i~~-~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~ 181 (201)
T 2ew1_A 104 LTYDITCEESFRCLP-EWLREIEQ-YASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFL 181 (201)
T ss_dssp EEEETTCHHHHHTHH-HHHHHHHH-HSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred EEEECCCHHHHHHHH-HHHHHHHH-hcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999988 89888875 3456789999999999975322 8999999999999999
Q ss_pred HHHHHHhC
Q psy3301 149 YAQKAVLH 156 (608)
Q Consensus 149 ~l~~~i~~ 156 (608)
++.+.+..
T Consensus 182 ~l~~~i~~ 189 (201)
T 2ew1_A 182 DLACRLIS 189 (201)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988753
No 42
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=1e-22 Score=193.21 Aligned_cols=150 Identities=23% Similarity=0.311 Sum_probs=124.8
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcce--EecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCc
Q psy3301 6 SLRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEI--TIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHV 83 (608)
Q Consensus 6 ~~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 83 (608)
...+.+||+|+|++|||||||+++|++..+...+.++.... .....+....+.+.||||+|++.+...+..+++.+|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 90 (195)
T 1x3s_A 11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQG 90 (195)
T ss_dssp TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence 33456899999999999999999999998876655543322 2233455667889999999999998889999999999
Q ss_pred EEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC----------------cccCcccCcCHHHHH
Q psy3301 84 ICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST----------------VESSAKTLKNISEMF 147 (608)
Q Consensus 84 iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------------~e~SAk~~~~i~~lf 147 (608)
+++|||++++.+++.+. .|+..+.......++|+++|+||+|+..... ++|||+++.||+++|
T Consensus 91 ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 169 (195)
T 1x3s_A 91 VILVYDVTRRDTFVKLD-NWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAF 169 (195)
T ss_dssp EEEEEETTCHHHHHTHH-HHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred EEEEEECcCHHHHHHHH-HHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHH
Confidence 99999999999999988 7988887533346789999999999965432 899999999999999
Q ss_pred HHHHHHHhC
Q psy3301 148 YYAQKAVLH 156 (608)
Q Consensus 148 ~~l~~~i~~ 156 (608)
+++.+.+..
T Consensus 170 ~~l~~~~~~ 178 (195)
T 1x3s_A 170 EELVEKIIQ 178 (195)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998865
No 43
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.89 E-value=6.7e-23 Score=197.69 Aligned_cols=150 Identities=29% Similarity=0.447 Sum_probs=124.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCc-ceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEE
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAE-EITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVIC 85 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 85 (608)
....+||+|+|++|||||||+++|+++.+...+.++.. .......+....+.+.||||+|++.+...+..+++.+|+++
T Consensus 6 ~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 6 VSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 34679999999999999999999999998766555543 22333345666789999999999999988888999999999
Q ss_pred EEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCC----------C----------------cccCccc
Q psy3301 86 LVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYS----------T----------------VESSAKT 139 (608)
Q Consensus 86 lV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~----------~----------------~e~SAk~ 139 (608)
+|||++++++|+.+...|+..+.. ...++|++||+||+|+.... . ++|||++
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRR--FAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKT 163 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHH--HCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHH--hCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCC
Confidence 999999999999997789999984 34589999999999986531 1 8999999
Q ss_pred CcCHHHHHHHHHHHHhCCC
Q psy3301 140 LKNISEMFYYAQKAVLHPM 158 (608)
Q Consensus 140 ~~~i~~lf~~l~~~i~~~~ 158 (608)
|.||+++|+++.+.+....
T Consensus 164 g~gi~~l~~~l~~~~~~~~ 182 (212)
T 2j0v_A 164 QQNVKAVFDTAIKVVLQPP 182 (212)
T ss_dssp CTTHHHHHHHHHHHHHCC-
T ss_pred CCCHHHHHHHHHHHHhhhh
Confidence 9999999999999997643
No 44
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.89 E-value=5.3e-22 Score=182.52 Aligned_cols=146 Identities=20% Similarity=0.342 Sum_probs=121.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCc-ceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEE
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAE-EITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLV 87 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV 87 (608)
+.+||+++|++|||||||+++|.+..+.....++.. .......+....+.+.+|||||++++...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 368999999999999999999999988766555442 2233334455668899999999999999999999999999999
Q ss_pred EEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC----------------cccCcccCcCHHHHHHHHH
Q psy3301 88 YSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST----------------VESSAKTLKNISEMFYYAQ 151 (608)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------------~e~SAk~~~~i~~lf~~l~ 151 (608)
||++++.+++.+. .|+..+.......++|+++|+||+|+..... +++||++|.|++++|.++.
T Consensus 82 ~d~~~~~~~~~~~-~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 160 (166)
T 2ce2_X 82 FAINNTKSFEDIH-QYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160 (166)
T ss_dssp EETTCHHHHHHHH-HHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHH
T ss_pred EECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 9999999999987 7888877543345899999999999976432 8999999999999999999
Q ss_pred HHHh
Q psy3301 152 KAVL 155 (608)
Q Consensus 152 ~~i~ 155 (608)
+.+.
T Consensus 161 ~~~~ 164 (166)
T 2ce2_X 161 REIR 164 (166)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8774
No 45
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.89 E-value=3.3e-23 Score=198.22 Aligned_cols=152 Identities=29% Similarity=0.289 Sum_probs=120.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcce-EecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEE
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEI-TIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVIC 85 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 85 (608)
..+.+||+|+|++|||||||+++|+++.+...+.++.... .....+....+.+.||||+|++.+...+..+++.+|+++
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 100 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYV 100 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEE
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEE
Confidence 3467999999999999999999999999887766554322 333344566788999999999999888888999999999
Q ss_pred EEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHH
Q psy3301 86 LVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFY 148 (608)
Q Consensus 86 lV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~ 148 (608)
+|||++++++++.+. .|+..+.......++|++||+||+|+..... ++|||++|.||+++|.
T Consensus 101 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 179 (201)
T 3oes_A 101 LVYSVTSLHSFQVIE-SLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFT 179 (201)
T ss_dssp EEEETTCHHHHHHHH-HHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHH
T ss_pred EEEeCCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHH
Confidence 999999999999998 7888887533456889999999999975433 8999999999999999
Q ss_pred HHHHHHhCCCC
Q psy3301 149 YAQKAVLHPMA 159 (608)
Q Consensus 149 ~l~~~i~~~~~ 159 (608)
++.+.+.....
T Consensus 180 ~l~~~i~~~~~ 190 (201)
T 3oes_A 180 KVIQEIARVEN 190 (201)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHhhhh
Confidence 99999865433
No 46
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.88 E-value=1.5e-22 Score=187.66 Aligned_cols=148 Identities=18% Similarity=0.117 Sum_probs=118.2
Q ss_pred ccCCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcE
Q psy3301 5 VSLRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVI 84 (608)
Q Consensus 5 ~~~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 84 (608)
+.+++.+||+|+|++|||||||+++|.++.+... .++...... .+....+.+.+|||||++.+...+..+++.+|++
T Consensus 2 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~~~--~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~i 78 (171)
T 1upt_A 2 SHMTREMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNVE--TVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAV 78 (171)
T ss_dssp -CCSSCEEEEEECSTTSSHHHHHHHHHHSSCCCC-CCCSSEEEE--EEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEE
T ss_pred CCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCc-CCcCccceE--EEEECCEEEEEEECCCChhhhHHHHHHhccCCEE
Confidence 3456789999999999999999999999887653 333222221 2233478899999999999988888899999999
Q ss_pred EEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC--------------------cccCcccCcCHH
Q psy3301 85 CLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST--------------------VESSAKTLKNIS 144 (608)
Q Consensus 85 ilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------------------~e~SAk~~~~i~ 144 (608)
++|||++++.+++.+. .|+..+.......++|+++|+||+|+..... ++|||++|.|++
T Consensus 79 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 157 (171)
T 1upt_A 79 IYVVDSCDRDRIGISK-SELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLD 157 (171)
T ss_dssp EEEEETTCCTTHHHHH-HHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHH
T ss_pred EEEEECCCHHHHHHHH-HHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHH
Confidence 9999999999999988 4555444212336889999999999976532 789999999999
Q ss_pred HHHHHHHHHHhC
Q psy3301 145 EMFYYAQKAVLH 156 (608)
Q Consensus 145 ~lf~~l~~~i~~ 156 (608)
++|+++.+.+..
T Consensus 158 ~l~~~l~~~i~~ 169 (171)
T 1upt_A 158 EAMEWLVETLKS 169 (171)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh
Confidence 999999988754
No 47
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.88 E-value=4.3e-23 Score=194.47 Aligned_cols=148 Identities=18% Similarity=0.284 Sum_probs=122.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCc-ceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEE
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAE-EITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVIC 85 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 85 (608)
....+||+|+|++|||||||+++|+++.+...+.++.. ..+....+....+.+.+|||+|++.+......+++.+|+++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 45679999999999999999999999998776555543 22333445667789999999999998888888899999999
Q ss_pred EEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCC------------CC------------------ccc
Q psy3301 86 LVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDY------------ST------------------VES 135 (608)
Q Consensus 86 lV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~------------------~e~ 135 (608)
+|||++++.+|+.+...|+..+.. ...++|+++|+||+|+... .. ++|
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~i~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 161 (184)
T 1m7b_A 84 ICFDISRPETLDSVLKKWKGEIQE--FCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 161 (184)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHH--HCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHH--HCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEe
Confidence 999999999999995589998884 3468999999999999742 10 899
Q ss_pred Ccc-cCcCHHHHHHHHHHHHhC
Q psy3301 136 SAK-TLKNISEMFYYAQKAVLH 156 (608)
Q Consensus 136 SAk-~~~~i~~lf~~l~~~i~~ 156 (608)
||+ ++.||+++|+.+.+.++.
T Consensus 162 Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 162 SALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp BTTTBHHHHHHHHHHHHHHHHT
T ss_pred eecCCCcCHHHHHHHHHHHHhc
Confidence 999 689999999999998764
No 48
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.88 E-value=1.3e-22 Score=190.72 Aligned_cols=144 Identities=22% Similarity=0.265 Sum_probs=114.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLV 87 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV 87 (608)
...+||+++|++|||||||+++|.+..+.. +.++....... +...++.+.+|||+|++.+...+..+++.+|++++|
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~-~~~t~g~~~~~--~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v 90 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQGFNIKS--VQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYV 90 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEE-EEEETTEEEEE--EEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCc-ccCcCCeEEEE--EEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence 467999999999999999999999886643 33322211111 222368899999999999999999999999999999
Q ss_pred EEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC--------------------cccCcccCcCHHHHH
Q psy3301 88 YSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST--------------------VESSAKTLKNISEMF 147 (608)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------------------~e~SAk~~~~i~~lf 147 (608)
||++++++++.+. .|+..+.......++|+++|+||+|+..... ++|||++|.||+++|
T Consensus 91 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 169 (181)
T 1fzq_A 91 IDSADRKRFEETG-QELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGM 169 (181)
T ss_dssp EETTCGGGHHHHH-HHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred EECcCHHHHHHHH-HHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHH
Confidence 9999999999988 5665554222346789999999999976422 789999999999999
Q ss_pred HHHHHHHh
Q psy3301 148 YYAQKAVL 155 (608)
Q Consensus 148 ~~l~~~i~ 155 (608)
+++.+.+.
T Consensus 170 ~~l~~~~~ 177 (181)
T 1fzq_A 170 NWVCKNVN 177 (181)
T ss_dssp HHHHHTC-
T ss_pred HHHHHHHH
Confidence 99988764
No 49
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.88 E-value=6.1e-23 Score=190.15 Aligned_cols=146 Identities=25% Similarity=0.359 Sum_probs=115.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcce--EecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEI--TIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVIC 85 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 85 (608)
...+||+|+|++|||||||+++|++..+.....++.... .....+....+.+.+|||||++.+......+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 457899999999999999999999998876544444322 223345566788999999999999888888899999999
Q ss_pred EEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHH
Q psy3301 86 LVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFY 148 (608)
Q Consensus 86 lV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~ 148 (608)
+|||++++.+++.+. .|+..+.. ....++|+++|+||+|+..... +++||++|.|++++|+
T Consensus 84 ~v~d~~~~~s~~~~~-~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1z08_A 84 LVYDITDEDSFQKVK-NWVKELRK-MLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFL 161 (170)
T ss_dssp EEEETTCHHHHHHHH-HHHHHHHH-HHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHH
T ss_pred EEEECcCHHHHHHHH-HHHHHHHH-hcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Confidence 999999999999998 88888775 2345789999999999975322 8999999999999999
Q ss_pred HHHHHHh
Q psy3301 149 YAQKAVL 155 (608)
Q Consensus 149 ~l~~~i~ 155 (608)
++.+.+.
T Consensus 162 ~l~~~~~ 168 (170)
T 1z08_A 162 DLCKRMI 168 (170)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998875
No 50
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=2.5e-22 Score=191.19 Aligned_cols=147 Identities=24% Similarity=0.339 Sum_probs=122.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcc-eEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEE-ITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICL 86 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iil 86 (608)
.+.+||+|+|++|||||||+++|+++.+...+.++... ......+....+.+.+|||+|++. ...+..+++.+|++++
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iil 104 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVL 104 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEE
Confidence 45799999999999999999999999987765555432 222344556678899999999988 7778899999999999
Q ss_pred EEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCc-CHHHHHH
Q psy3301 87 VYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLK-NISEMFY 148 (608)
Q Consensus 87 V~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~-~i~~lf~ 148 (608)
|||++++++++.+. .|+..+.......++|++||+||+|+..... ++|||++|. ||+++|+
T Consensus 105 v~D~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~ 183 (196)
T 2atv_A 105 VYDITDRGSFEEVL-PLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFY 183 (196)
T ss_dssp EEETTCHHHHHTHH-HHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHH
T ss_pred EEECcCHHHHHHHH-HHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHH
Confidence 99999999999988 7888777533456899999999999976322 899999999 9999999
Q ss_pred HHHHHHhC
Q psy3301 149 YAQKAVLH 156 (608)
Q Consensus 149 ~l~~~i~~ 156 (608)
++.+.+..
T Consensus 184 ~l~~~i~~ 191 (196)
T 2atv_A 184 ELCREVRR 191 (196)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99988753
No 51
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.88 E-value=6.3e-23 Score=193.05 Aligned_cols=149 Identities=27% Similarity=0.373 Sum_probs=124.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCc-ceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAE-EITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICL 86 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iil 86 (608)
++.+||+++|++|||||||+++|+++.+...+.++.. .......+....+.+.+|||||++++...+..+++.+|++++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 4578999999999999999999999988766555442 223334456667889999999999998888888999999999
Q ss_pred EEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCC-----------------------------C-cccC
Q psy3301 87 VYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYS-----------------------------T-VESS 136 (608)
Q Consensus 87 V~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-----------------------------~-~e~S 136 (608)
|||++++.+++.+...|+..+.. ...++|+++|+||+|+.... . ++||
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 160 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHH--HSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEECCChhhHHHHHHHHHHHHHH--hCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence 99999999999998789998884 34489999999999986531 1 8899
Q ss_pred cccCcCHHHHHHHHHHHHhCCC
Q psy3301 137 AKTLKNISEMFYYAQKAVLHPM 158 (608)
Q Consensus 137 Ak~~~~i~~lf~~l~~~i~~~~ 158 (608)
|++|.||+++|+++.+.+.++.
T Consensus 161 a~~g~gi~~l~~~l~~~~~~~~ 182 (186)
T 1mh1_A 161 ALTQRGLKTVFDEAIRAVLCPP 182 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHSCCC
T ss_pred CCCccCHHHHHHHHHHHHhccc
Confidence 9999999999999999997643
No 52
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=3.7e-23 Score=196.16 Aligned_cols=147 Identities=20% Similarity=0.285 Sum_probs=123.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCC--cceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKA--EEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVIC 85 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 85 (608)
...+||+|+|++|||||||+++|++..+.....++. +.......+....+.+.||||+|++.+...+..+++.+|+++
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 356899999999999999999999988776533322 222333445667789999999999999999999999999999
Q ss_pred EEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHH
Q psy3301 86 LVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFY 148 (608)
Q Consensus 86 lV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~ 148 (608)
+|||++++.+++.+. .|+..+.. ....++|++||+||+|+..... ++|||++|.||+++|+
T Consensus 101 ~v~d~~~~~s~~~~~-~~~~~i~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 178 (191)
T 3dz8_A 101 LMYDITNEESFNAVQ-DWATQIKT-YSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFE 178 (191)
T ss_dssp EEEETTCHHHHHTHH-HHHHHHHH-HSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred EEEECcCHHHHHHHH-HHHHHHHH-hcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 999999999999998 79998886 3456899999999999965432 8999999999999999
Q ss_pred HHHHHHhC
Q psy3301 149 YAQKAVLH 156 (608)
Q Consensus 149 ~l~~~i~~ 156 (608)
++.+.+..
T Consensus 179 ~l~~~i~~ 186 (191)
T 3dz8_A 179 RLVDAICD 186 (191)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998754
No 53
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=2.4e-22 Score=186.22 Aligned_cols=147 Identities=27% Similarity=0.317 Sum_probs=118.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcce-EecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEE
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEI-TIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLV 87 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV 87 (608)
+.+||+++|++|||||||+++|+++.+...+.++.... ..........+.+.+|||||++++......+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 46899999999999999999999998876544443322 22223445567899999999999999999999999999999
Q ss_pred EEcCChhhHHHHHHhHHHHHhhh-ccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHH
Q psy3301 88 YSVVDDASIDRLSSHWLPFLRNC-LVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYY 149 (608)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~i~~~-~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~ 149 (608)
||++++.+++.+. .|+..+... ....++|+++|+||+|+..... +++||++|.|++++|++
T Consensus 82 ~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (172)
T 2erx_A 82 YSITSRQSLEELK-PIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE 160 (172)
T ss_dssp EETTCHHHHHTTH-HHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EECcCHHHHHHHH-HHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence 9999999999887 666666542 2235789999999999865432 89999999999999999
Q ss_pred HHHHHhC
Q psy3301 150 AQKAVLH 156 (608)
Q Consensus 150 l~~~i~~ 156 (608)
+.+.+..
T Consensus 161 l~~~~~~ 167 (172)
T 2erx_A 161 LLNLEKR 167 (172)
T ss_dssp HHHTCCS
T ss_pred HHHHHhh
Confidence 9987644
No 54
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.88 E-value=8.9e-23 Score=195.02 Aligned_cols=148 Identities=30% Similarity=0.385 Sum_probs=116.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCc-ceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEE
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAE-EITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVIC 85 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 85 (608)
....+||+|+|++|||||||+++|+++.+...+.++.. .......+....+.+.+|||+|++++...+..+++.+|+++
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 96 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFL 96 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEE
Confidence 45689999999999999999999999988776555543 22223334555678899999999999888888999999999
Q ss_pred EEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCC------------CC------------------ccc
Q psy3301 86 LVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDY------------ST------------------VES 135 (608)
Q Consensus 86 lV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~------------------~e~ 135 (608)
+|||++++.+++.+...|+..+.. ...++|++||+||+|+... .. ++|
T Consensus 97 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 174 (201)
T 2q3h_A 97 LCFSVVSPSSFQNVSEKWVPEIRC--HCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIEC 174 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHH--HCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHH--hCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEE
Confidence 999999999999997789998884 3458999999999999652 11 899
Q ss_pred CcccCcCHHHHHHHHHHHHhC
Q psy3301 136 SAKTLKNISEMFYYAQKAVLH 156 (608)
Q Consensus 136 SAk~~~~i~~lf~~l~~~i~~ 156 (608)
||++|.||+++|.++.+.+..
T Consensus 175 Sa~~g~gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 175 SALTQKNLKEVFDAAIVAGIQ 195 (201)
T ss_dssp CTTTCTTHHHHHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999998864
No 55
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.88 E-value=1.7e-22 Score=191.74 Aligned_cols=147 Identities=22% Similarity=0.283 Sum_probs=122.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCc--ceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcE
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAE--EITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVI 84 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 84 (608)
....+||+|+|++|||||||+++|++..+.....++.. ..+....+....+.+.||||+|++++...+..+++.+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 101 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA 101 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 34569999999999999999999999998766544432 2223334556678899999999999999999999999999
Q ss_pred EEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHH
Q psy3301 85 CLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMF 147 (608)
Q Consensus 85 ilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf 147 (608)
|+|||++++.+++.+. .|+..+.. ....++|+++|+||+|+..... ++|||++|.||+++|
T Consensus 102 i~v~D~~~~~s~~~~~-~~l~~i~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 179 (193)
T 2oil_A 102 LLVFDLTKHQTYAVVE-RWLKELYD-HAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAF 179 (193)
T ss_dssp EEEEETTCHHHHHTHH-HHHHHHHT-TSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHH
T ss_pred EEEEECCCHHHHHHHH-HHHHHHHH-hcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 9999999999999988 78888875 3456889999999999975322 899999999999999
Q ss_pred HHHHHHHh
Q psy3301 148 YYAQKAVL 155 (608)
Q Consensus 148 ~~l~~~i~ 155 (608)
.++.+.+.
T Consensus 180 ~~l~~~i~ 187 (193)
T 2oil_A 180 ETVLKEIF 187 (193)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988875
No 56
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.88 E-value=1e-22 Score=193.03 Aligned_cols=147 Identities=23% Similarity=0.308 Sum_probs=119.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCc--ceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcE
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAE--EITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVI 84 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 84 (608)
....+||+|+|++|||||||+++|+++.+.....++.+ .......+....+.+.||||+|++.+...+..+++.+|++
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 97 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA 97 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEE
Confidence 34578999999999999999999999988765444322 2222334455668899999999999988889999999999
Q ss_pred EEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHH
Q psy3301 85 CLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMF 147 (608)
Q Consensus 85 ilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf 147 (608)
++|||++++.+++.+. .|+..+.. ....++|++||+||+|+..... ++|||++|.||+++|
T Consensus 98 i~v~d~~~~~s~~~~~-~~l~~i~~-~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 175 (191)
T 2a5j_A 98 LLVYDITRRETFNHLT-SWLEDARQ-HSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAF 175 (191)
T ss_dssp EEEEETTCHHHHHTHH-HHHHHHHH-HSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHH
T ss_pred EEEEECCCHHHHHHHH-HHHHHHHH-hcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 9999999999999988 78888875 3456899999999999965322 899999999999999
Q ss_pred HHHHHHHh
Q psy3301 148 YYAQKAVL 155 (608)
Q Consensus 148 ~~l~~~i~ 155 (608)
.++.+.+.
T Consensus 176 ~~l~~~i~ 183 (191)
T 2a5j_A 176 INTAKEIY 183 (191)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988875
No 57
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=2.1e-22 Score=190.15 Aligned_cols=148 Identities=11% Similarity=0.096 Sum_probs=114.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLV 87 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV 87 (608)
++.+||+|+|++|||||||+++|+++.+.. +.++...... .+...++.+.+|||+|++++...+..+++.+|++++|
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 90 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVH-TSPTIGSNVE--EIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVV 90 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEE-EECCSCSSCE--EEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCc-CcCCCccceE--EEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 568999999999999999999999988763 3333221111 1223468899999999999988889999999999999
Q ss_pred EEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC--------------------cccCcccCcCHHHHH
Q psy3301 88 YSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST--------------------VESSAKTLKNISEMF 147 (608)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------------------~e~SAk~~~~i~~lf 147 (608)
||++++++++.+. .|+..+.......+.|+++|+||+|+..... ++|||++|.||+++|
T Consensus 91 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 169 (187)
T 1zj6_A 91 VDSTDRERISVTR-EELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGL 169 (187)
T ss_dssp EETTCTTTHHHHH-HHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHH
T ss_pred EeCCCHHHHHHHH-HHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHH
Confidence 9999999999998 6766665322246899999999999975321 789999999999999
Q ss_pred HHHHHHHhCCCC
Q psy3301 148 YYAQKAVLHPMA 159 (608)
Q Consensus 148 ~~l~~~i~~~~~ 159 (608)
+++.+.+..+..
T Consensus 170 ~~l~~~~~~~~~ 181 (187)
T 1zj6_A 170 EWMMSRLKIRLE 181 (187)
T ss_dssp HHHHHHHCC---
T ss_pred HHHHHHHHHHhh
Confidence 999998865443
No 58
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.88 E-value=2.6e-22 Score=192.15 Aligned_cols=147 Identities=21% Similarity=0.287 Sum_probs=122.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcce--EecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEI--TIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVIC 85 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 85 (608)
...+||+|+|++|||||||+++|++..+...+.++.... .....+....+.+.+|||+|++.+...+..+++.+|++|
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI 85 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence 346899999999999999999999999876644443322 223344556789999999999999999999999999999
Q ss_pred EEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHH
Q psy3301 86 LVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFY 148 (608)
Q Consensus 86 lV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~ 148 (608)
+|||++++.+++.+. .|+..+.. ....++|+++|+||+|+..... ++|||++|.||+++|+
T Consensus 86 ~v~d~~~~~s~~~~~-~~~~~i~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 163 (203)
T 1zbd_A 86 LMYDITNEESFNAVQ-DWSTQIKT-YSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFE 163 (203)
T ss_dssp EEEETTCHHHHHHHH-HHHHHHHH-HSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHH
T ss_pred EEEECcCHHHHHHHH-HHHHHHHH-hcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHH
Confidence 999999999999988 78888875 2346889999999999976432 8999999999999999
Q ss_pred HHHHHHhC
Q psy3301 149 YAQKAVLH 156 (608)
Q Consensus 149 ~l~~~i~~ 156 (608)
++.+.+..
T Consensus 164 ~l~~~i~~ 171 (203)
T 1zbd_A 164 RLVDVICE 171 (203)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988753
No 59
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.88 E-value=3.6e-23 Score=198.60 Aligned_cols=145 Identities=26% Similarity=0.374 Sum_probs=120.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCc-ceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAE-EITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICL 86 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iil 86 (608)
.+.+||+++|++|||||||+++|+++.+...+.++.. .......+....+.+.+|||+|++.+......+++.+|++++
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 107 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 107 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 4679999999999999999999999988776555542 233334456667888899999999998888889999999999
Q ss_pred EEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCC------------------------------CcccC
Q psy3301 87 VYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYS------------------------------TVESS 136 (608)
Q Consensus 87 V~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~------------------------------~~e~S 136 (608)
|||++++.+++.+...|+..+.. ...++|+++|+||+|+.... .++||
T Consensus 108 v~d~~~~~s~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 185 (204)
T 4gzl_A 108 CFSLVSPASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHH--HCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEECCCHHHHHHHHHHHHHHHHH--hCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEee
Confidence 99999999999998789999884 34789999999999986532 18899
Q ss_pred cccCcCHHHHHHHHHHHH
Q psy3301 137 AKTLKNISEMFYYAQKAV 154 (608)
Q Consensus 137 Ak~~~~i~~lf~~l~~~i 154 (608)
|++|.||+++|+++.+.+
T Consensus 186 A~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 186 ALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp TTTCTTHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998865
No 60
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.88 E-value=6.1e-23 Score=197.19 Aligned_cols=151 Identities=19% Similarity=0.290 Sum_probs=122.0
Q ss_pred ccccCCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcc-eEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhc
Q psy3301 3 MKVSLRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEE-ITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKA 81 (608)
Q Consensus 3 ~~~~~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a 81 (608)
|.......+||+|+|++|||||||+++|++..+...+.++... .+....+....+.+.||||+|++.+......+++.+
T Consensus 21 m~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 100 (205)
T 1gwn_A 21 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDS 100 (205)
T ss_dssp ------CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred CCcccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCC
Confidence 3334456799999999999999999999999987765555432 233344566678999999999999888888889999
Q ss_pred CcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCC------------CC-----------------
Q psy3301 82 HVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDY------------ST----------------- 132 (608)
Q Consensus 82 d~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~----------------- 132 (608)
|++|+|||++++.+|+.+...|+..+.. ...++|++||+||+|+... ..
T Consensus 101 d~~ilv~D~~~~~s~~~~~~~~~~~i~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 178 (205)
T 1gwn_A 101 DAVLICFDISRPETLDSVLKKWKGEIQE--FCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAAT 178 (205)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHH--HCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSE
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHH--HCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCE
Confidence 9999999999999999995589998884 3468999999999999742 10
Q ss_pred -cccCcc-cCcCHHHHHHHHHHHHh
Q psy3301 133 -VESSAK-TLKNISEMFYYAQKAVL 155 (608)
Q Consensus 133 -~e~SAk-~~~~i~~lf~~l~~~i~ 155 (608)
++|||+ ++.||+++|+.+.+.++
T Consensus 179 ~~e~SAk~~~~gv~~lf~~l~~~~l 203 (205)
T 1gwn_A 179 YIECSALQSENSVRDIFHVATLACV 203 (205)
T ss_dssp EEECCTTTCHHHHHHHHHHHHHHHH
T ss_pred EEEeeeccCCcCHHHHHHHHHHHHh
Confidence 899999 68999999999998875
No 61
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.88 E-value=1.5e-22 Score=194.40 Aligned_cols=148 Identities=23% Similarity=0.335 Sum_probs=123.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcce--EecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcE
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEI--TIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVI 84 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 84 (608)
....+||+|+|++|||||||+++|.+..+...+.++.+.. .....+....+.+.+|||+|++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v 84 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI 84 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence 4557999999999999999999999999876644443222 22333455567899999999999988888899999999
Q ss_pred EEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHH
Q psy3301 85 CLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMF 147 (608)
Q Consensus 85 ilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf 147 (608)
++|||++++.+++.+. .|+..+.. ....++|++||+||+|+..... +++||++|.||+++|
T Consensus 85 ilv~d~~~~~s~~~~~-~~~~~i~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 162 (206)
T 2bcg_Y 85 IIVYDVTDQESFNGVK-MWLQEIDR-YATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAF 162 (206)
T ss_dssp EEEEETTCHHHHHHHH-HHHHHHHH-HSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHH
T ss_pred EEEEECcCHHHHHHHH-HHHHHHHH-hcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999998 79888875 3456899999999999976432 899999999999999
Q ss_pred HHHHHHHhC
Q psy3301 148 YYAQKAVLH 156 (608)
Q Consensus 148 ~~l~~~i~~ 156 (608)
.++.+.+..
T Consensus 163 ~~l~~~i~~ 171 (206)
T 2bcg_Y 163 LTMARQIKE 171 (206)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998854
No 62
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.88 E-value=1.6e-22 Score=192.05 Aligned_cols=144 Identities=15% Similarity=0.131 Sum_probs=112.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLV 87 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV 87 (608)
++.+||+|+|++|||||||+++|+++.+....+ +..... ..+...++.+.+|||||++++...+..+++.+|++++|
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~-t~~~~~--~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv 103 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNV--ETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 103 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEE-ETTEEE--EEEEETTEEEEEEECC-----CTTHHHHHHTCCEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccccCC-cCceeE--EEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 467999999999999999999999988764322 222111 22344678999999999999988899999999999999
Q ss_pred EEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC--------------------cccCcccCcCHHHHH
Q psy3301 88 YSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST--------------------VESSAKTLKNISEMF 147 (608)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------------------~e~SAk~~~~i~~lf 147 (608)
||++++++++.+. .|+..+.......++|++||+||+|+..... ++|||++|.||+++|
T Consensus 104 ~D~~~~~s~~~~~-~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 182 (192)
T 2b6h_A 104 VDSNDRERVQESA-DELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGL 182 (192)
T ss_dssp EETTCGGGHHHHH-HHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred EECCCHHHHHHHH-HHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCHHHHH
Confidence 9999999999988 6666654323345799999999999976522 789999999999999
Q ss_pred HHHHHHHh
Q psy3301 148 YYAQKAVL 155 (608)
Q Consensus 148 ~~l~~~i~ 155 (608)
+++.+.+.
T Consensus 183 ~~l~~~i~ 190 (192)
T 2b6h_A 183 DWLSHELS 190 (192)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 99998764
No 63
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.88 E-value=1.2e-22 Score=196.57 Aligned_cols=147 Identities=29% Similarity=0.409 Sum_probs=105.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCC-cceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKA-EEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICL 86 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iil 86 (608)
.+.+||+|+|++|||||||+++|+++.+...+.++. ........+....+.+.||||+|++.+...+..+++.+|++++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 111 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL 111 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence 457999999999999999999999998876655544 2233334455667889999999999999989999999999999
Q ss_pred EEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCC------------C------------------cccC
Q psy3301 87 VYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYS------------T------------------VESS 136 (608)
Q Consensus 87 V~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~------------~------------------~e~S 136 (608)
|||++++.+|+.+...|+..+.. ...++|++||+||+|+.... . ++||
T Consensus 112 v~d~~~~~s~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 189 (214)
T 2j1l_A 112 CFDVTSPNSFDNIFNRWYPEVNH--FCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS 189 (214)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHH--HCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred EEECcCHHHHHHHHHHHHHHHHH--hCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence 99999999999997789999884 34689999999999997642 0 8999
Q ss_pred cccCcCHHHHHHHHHHHHhC
Q psy3301 137 AKTLKNISEMFYYAQKAVLH 156 (608)
Q Consensus 137 Ak~~~~i~~lf~~l~~~i~~ 156 (608)
|++|.||+++|.++.+.+..
T Consensus 190 A~~g~gi~el~~~l~~~~~~ 209 (214)
T 2j1l_A 190 ARLHDNVHAVFQEAAEVALS 209 (214)
T ss_dssp TTTTBSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999998864
No 64
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.88 E-value=1.7e-22 Score=187.02 Aligned_cols=146 Identities=26% Similarity=0.388 Sum_probs=118.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcce--EecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEE
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEI--TIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICL 86 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iil 86 (608)
..+||+|+|++|||||||+++|++..+.....++.+.. .....+....+.+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 36899999999999999999999998876544433322 2233445566889999999999998888999999999999
Q ss_pred EEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC----------------cccCcccCcCHHHHHHHH
Q psy3301 87 VYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST----------------VESSAKTLKNISEMFYYA 150 (608)
Q Consensus 87 V~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------------~e~SAk~~~~i~~lf~~l 150 (608)
|||++++.+++.+. .|+..+.. ....++|+++|+||+|+..... +++||++|.|++++|.++
T Consensus 82 v~d~~~~~s~~~~~-~~~~~i~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 159 (170)
T 1g16_A 82 VYDITDERTFTNIK-QWFKTVNE-HANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 159 (170)
T ss_dssp EEETTCHHHHHTHH-HHHHHHHH-HSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHH
T ss_pred EEECCCHHHHHHHH-HHHHHHHH-hcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 99999999999987 78888775 3446889999999999954322 899999999999999999
Q ss_pred HHHHhC
Q psy3301 151 QKAVLH 156 (608)
Q Consensus 151 ~~~i~~ 156 (608)
.+.+..
T Consensus 160 ~~~~~~ 165 (170)
T 1g16_A 160 AKLIQE 165 (170)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988754
No 65
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.88 E-value=1.1e-22 Score=197.66 Aligned_cols=148 Identities=20% Similarity=0.289 Sum_probs=124.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCC--cceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcE
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKA--EEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVI 84 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 84 (608)
....+||+|+|++|||||||+++|+.+.+...+.++. +.......+....+.+.+|||+|++.+...+..+++.+|++
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 91 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCA 91 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEE
Confidence 4457999999999999999999988777665544443 33344445566778999999999999988889999999999
Q ss_pred EEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC---------------cccCcccCcCHHHHHHH
Q psy3301 85 CLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST---------------VESSAKTLKNISEMFYY 149 (608)
Q Consensus 85 ilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~---------------~e~SAk~~~~i~~lf~~ 149 (608)
++|||++++.+++.+. .|+..+.. ...++|+++|+||+|+.+... ++|||++|.||+++|.+
T Consensus 92 i~v~d~~~~~s~~~~~-~~~~~~~~--~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 168 (221)
T 3gj0_A 92 IIMFDVTSRVTYKNVP-NWHRDLVR--VCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLW 168 (221)
T ss_dssp EEEEETTCHHHHHTHH-HHHHHHHH--HSTTCCEEEEEECTTSSSCSSCGGGCCHHHHHTCEEEECBGGGTBTTTHHHHH
T ss_pred EEEEECCCHHHHHHHH-HHHHHHHH--hCCCCCEEEEEECCccccccccHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 9999999999999998 79998884 346899999999999976543 89999999999999999
Q ss_pred HHHHHhCC
Q psy3301 150 AQKAVLHP 157 (608)
Q Consensus 150 l~~~i~~~ 157 (608)
+.+.+...
T Consensus 169 l~~~l~~~ 176 (221)
T 3gj0_A 169 LARKLIGD 176 (221)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhC
Confidence 99998654
No 66
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.88 E-value=1.5e-23 Score=202.58 Aligned_cols=142 Identities=19% Similarity=0.209 Sum_probs=110.1
Q ss_pred ceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecc-------eEeCCcceeEeeeeccccc------
Q psy3301 408 NVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINT-------TTVYGQEKYLVLKEILVRD------ 474 (608)
Q Consensus 408 ~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~-------~~v~Gqe~~~~l~~~~~~~------ 474 (608)
+-|||+|||++|||||||++||+.+.|...|.+|++.+.+...+.+++ .+++|||+|..+++.|+++
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~il 91 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVV 91 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEE
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEE
Confidence 349999999999999999999999999999998888743333343433 3349999999999999998
Q ss_pred ccccCCCCcc--cccccc------cCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHH
Q psy3301 475 EQLPVLLPVD--VDCDKY------FSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFV 544 (608)
Q Consensus 475 v~d~~l~~~~--~~~~~~------~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~ 544 (608)
+|| +++.+ +.+..| ...+++|++|||||+||.+.|+++.++++++|+++++. ++++| ++.||+++|.
T Consensus 92 v~d--i~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~-~~e~SAktg~nV~e~F~ 168 (216)
T 4dkx_A 92 VYD--ITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVM-FIETSAKAGYNVKQLFR 168 (216)
T ss_dssp EEE--TTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEEEBTTTTBSHHHHHH
T ss_pred Eee--cchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCe-eEEEeCCCCcCHHHHHH
Confidence 898 88877 444422 23578999999999999999999999999999999997 99999 8999999999
Q ss_pred HHHHHHcC
Q psy3301 545 KLATMAAF 552 (608)
Q Consensus 545 ~l~~~a~~ 552 (608)
.|++.+..
T Consensus 169 ~i~~~i~~ 176 (216)
T 4dkx_A 169 RVAAALPG 176 (216)
T ss_dssp HHHHHC--
T ss_pred HHHHHHHh
Confidence 99998754
No 67
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.88 E-value=2.5e-22 Score=187.49 Aligned_cols=148 Identities=26% Similarity=0.334 Sum_probs=119.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceE--ecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEIT--IPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVIC 85 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 85 (608)
...+||+|+|++|||||||+++|++..+.....++..... ....+....+.+.+|||||++.+...+..+++.+|+++
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 84 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL 84 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEE
Confidence 3468999999999999999999999988766555443322 22334555688999999999999998889999999999
Q ss_pred EEEEcCChhhHHHHHHhHHHHHhhhc---cCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHH
Q psy3301 86 LVYSVVDDASIDRLSSHWLPFLRNCL---VDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISE 145 (608)
Q Consensus 86 lV~d~~~~~s~~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~ 145 (608)
+|||++++.+++.+. .|+..+.... ...++|+++|+||+|+..... ++|||++|.|+++
T Consensus 85 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 163 (177)
T 1wms_A 85 LTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAA 163 (177)
T ss_dssp EEEETTCHHHHHTHH-HHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHH
T ss_pred EEEECcCHHHHHHHH-HHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHH
Confidence 999999999999987 7888776531 126789999999999974321 8999999999999
Q ss_pred HHHHHHHHHhC
Q psy3301 146 MFYYAQKAVLH 156 (608)
Q Consensus 146 lf~~l~~~i~~ 156 (608)
+|+++.+.+..
T Consensus 164 l~~~l~~~~~~ 174 (177)
T 1wms_A 164 AFEEAVRRVLA 174 (177)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998865
No 68
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=3.2e-22 Score=187.29 Aligned_cols=148 Identities=26% Similarity=0.326 Sum_probs=115.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCC-cCCCCCcceEe--cCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCc
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPE-LVPSKAEEITI--PPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHV 83 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~-~~~~~~~~~~i--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 83 (608)
....+||+|+|++|||||||+++|++..+.. .+.++.+.... ...+....+.+.+|||||++.+...+..+++.+|+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 4457899999999999999999999998853 34444333222 22345556789999999999998888889999999
Q ss_pred EEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHH
Q psy3301 84 ICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEM 146 (608)
Q Consensus 84 iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~l 146 (608)
+++|||++++.+++.+. .|+..+... ...++|+++|+||+|+..... ++|||++|.||+++
T Consensus 87 ii~v~d~~~~~s~~~~~-~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 164 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNIQ-AWLTEIHEY-AQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLA 164 (180)
T ss_dssp EEEEEETTCHHHHHTHH-HHHHHHHHH-SCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred EEEEEECCCHHHHHHHH-HHHHHHHHh-CCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 99999999999999988 788888752 346899999999999986432 89999999999999
Q ss_pred HHHHHHHHhC
Q psy3301 147 FYYAQKAVLH 156 (608)
Q Consensus 147 f~~l~~~i~~ 156 (608)
|.++.+.+..
T Consensus 165 ~~~l~~~~~~ 174 (180)
T 2g6b_A 165 FTAIAKELKR 174 (180)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 9999998864
No 69
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.88 E-value=1.3e-22 Score=187.34 Aligned_cols=146 Identities=25% Similarity=0.288 Sum_probs=121.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcce--EecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEI--TIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVIC 85 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 85 (608)
...+||+|+|++|||||||+++|+++.+...+.++.... .....+....+.+.+|||||++.+...+..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 457899999999999999999999998876655543322 223334555688999999999998888899999999999
Q ss_pred EEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHH
Q psy3301 86 LVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFY 148 (608)
Q Consensus 86 lV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~ 148 (608)
+|||++++.+++.+. .|+..+... ..+.|+++|+||+|+..... +++||++|.|++++|+
T Consensus 83 ~v~d~~~~~s~~~~~-~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 159 (168)
T 1z2a_A 83 LVFSTTDRESFEAIS-SWREKVVAE--VGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFK 159 (168)
T ss_dssp EEEETTCHHHHHTHH-HHHHHHHHH--HCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHH
T ss_pred EEEECcCHHHHHHHH-HHHHHHHHh--CCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Confidence 999999999999988 688887742 26889999999999975332 8999999999999999
Q ss_pred HHHHHHhC
Q psy3301 149 YAQKAVLH 156 (608)
Q Consensus 149 ~l~~~i~~ 156 (608)
++.+.+..
T Consensus 160 ~l~~~~~~ 167 (168)
T 1z2a_A 160 YLAEKHLQ 167 (168)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhh
Confidence 99988753
No 70
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.88 E-value=1.3e-22 Score=190.02 Aligned_cols=149 Identities=21% Similarity=0.322 Sum_probs=108.9
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCc--ceEecCccC-CCceeEEEEeCCCCCCChHHHHHHHHhcC
Q psy3301 6 SLRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAE--EITIPPDVT-PEMVPTHIVDYSEVDQTVDELTEEIQKAH 82 (608)
Q Consensus 6 ~~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~--~~~i~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad 82 (608)
.....+||+|+|++|||||||+++|++..+...+.++.+ .......+. ...+.+.+|||||++.+...+..+++.+|
T Consensus 4 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (182)
T 1ky3_A 4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD 83 (182)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCC
T ss_pred ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCC
Confidence 345679999999999999999999999988766544432 222223333 44678999999999999888888999999
Q ss_pred cEEEEEEcCChhhHHHHHHhHHHHHhhhc---cCCCCcEEEEEeCcCCCCCCC-------------------cccCcccC
Q psy3301 83 VICLVYSVVDDASIDRLSSHWLPFLRNCL---VDTCLPIVLVGNKVDLVDYST-------------------VESSAKTL 140 (608)
Q Consensus 83 ~iilV~d~~~~~s~~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~~-------------------~e~SAk~~ 140 (608)
++++|||++++.+++.+. .|+..+.... ...++|+++|+||+|+..... ++|||++|
T Consensus 84 ~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 162 (182)
T 1ky3_A 84 CCVLVYDVTNASSFENIK-SWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNA 162 (182)
T ss_dssp EEEEEEETTCHHHHHTHH-HHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTT
T ss_pred EEEEEEECCChHHHHHHH-HHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCC
Confidence 999999999999999987 7887776431 236889999999999953211 89999999
Q ss_pred cCHHHHHHHHHHHHh
Q psy3301 141 KNISEMFYYAQKAVL 155 (608)
Q Consensus 141 ~~i~~lf~~l~~~i~ 155 (608)
.||+++|+++.+.+.
T Consensus 163 ~gi~~l~~~l~~~~~ 177 (182)
T 1ky3_A 163 INVDTAFEEIARSAL 177 (182)
T ss_dssp BSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998875
No 71
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.88 E-value=4.1e-22 Score=188.71 Aligned_cols=149 Identities=21% Similarity=0.237 Sum_probs=121.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEe---cCccCCC---------ceeEEEEeCCCCCCChHHH
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITI---PPDVTPE---------MVPTHIVDYSEVDQTVDEL 74 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i---~~~~~~~---------~~~~~i~Dt~G~~~~~~~~ 74 (608)
....+||+|+|++|||||||+++|+++.+.....++...... ...+... .+.+.+|||||++.+...+
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 87 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT 87 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence 345799999999999999999999998887654444332221 1122222 6789999999999999999
Q ss_pred HHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCc
Q psy3301 75 TEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSA 137 (608)
Q Consensus 75 ~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SA 137 (608)
..+++.+|++++|||++++.+++.+. .|+..+.......++|+++|+||+|+..... ++|||
T Consensus 88 ~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 166 (195)
T 3bc1_A 88 TAFFRDAMGFLLLFDLTNEQSFLNVR-NWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSA 166 (195)
T ss_dssp HHTTTTCSEEEEEEETTCHHHHHTHH-HHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCT
T ss_pred HHHHcCCCEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEEC
Confidence 99999999999999999999999988 7888877533336899999999999975322 89999
Q ss_pred ccCcCHHHHHHHHHHHHhC
Q psy3301 138 KTLKNISEMFYYAQKAVLH 156 (608)
Q Consensus 138 k~~~~i~~lf~~l~~~i~~ 156 (608)
++|.||+++|.++.+.+..
T Consensus 167 ~~~~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 167 ANGTNISHAIEMLLDLIMK 185 (195)
T ss_dssp TTCTTHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999988753
No 72
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.88 E-value=2.5e-22 Score=190.04 Aligned_cols=148 Identities=24% Similarity=0.390 Sum_probs=118.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcc--eEecCccCCCceeEEEEeCCCCCCCh-HHHHHHHHhcCc
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEE--ITIPPDVTPEMVPTHIVDYSEVDQTV-DELTEEIQKAHV 83 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~i~Dt~G~~~~~-~~~~~~~~~ad~ 83 (608)
.++.+||+|+|++|||||||+++|+++.+.....++... ......+....+.+.||||+|++++. ..+..+++.+|+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ 96 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA 96 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence 345799999999999999999999999887654444322 22233445556889999999999887 778889999999
Q ss_pred EEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccC---cCH
Q psy3301 84 ICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTL---KNI 143 (608)
Q Consensus 84 iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~---~~i 143 (608)
+|+|||++++.+++.+. .|+..+.......++|+++|+||+|+..... ++|||+++ .||
T Consensus 97 iilv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i 175 (189)
T 1z06_A 97 VVFVYDMTNMASFHSLP-AWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHV 175 (189)
T ss_dssp EEEEEETTCHHHHHTHH-HHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCH
T ss_pred EEEEEECcCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCH
Confidence 99999999999999988 7888877543356899999999999965432 89999999 999
Q ss_pred HHHHHHHHHHHh
Q psy3301 144 SEMFYYAQKAVL 155 (608)
Q Consensus 144 ~~lf~~l~~~i~ 155 (608)
+++|.++.+.+.
T Consensus 176 ~~l~~~l~~~i~ 187 (189)
T 1z06_A 176 EAIFMTLAHKLK 187 (189)
T ss_dssp HHHHHHHC----
T ss_pred HHHHHHHHHHHh
Confidence 999999887653
No 73
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.88 E-value=2.2e-22 Score=190.39 Aligned_cols=146 Identities=22% Similarity=0.283 Sum_probs=121.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcce--EecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEI--TIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVIC 85 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 85 (608)
...+||+|+|++|||||||+++|++..+...+.++.... .....+....+.+.+|||+|++.+...+..+++.+|+++
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 99 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFL 99 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEE
Confidence 346899999999999999999999998876544443222 223334556788999999999999888888999999999
Q ss_pred EEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHH
Q psy3301 86 LVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFY 148 (608)
Q Consensus 86 lV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~ 148 (608)
+|||++++.+++.+. .|+..+.. ....++|++||+||+|+..... ++|||++|.||+++|+
T Consensus 100 ~v~d~~~~~s~~~~~-~~~~~i~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 177 (189)
T 2gf9_A 100 LMYDIANQESFAAVQ-DWATQIKT-YSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFE 177 (189)
T ss_dssp EEEETTCHHHHHTHH-HHHHHHHH-HSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred EEEECCCHHHHHHHH-HHHHHHHH-hcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 999999999999988 78888875 3446889999999999975432 8999999999999999
Q ss_pred HHHHHHh
Q psy3301 149 YAQKAVL 155 (608)
Q Consensus 149 ~l~~~i~ 155 (608)
++.+.+.
T Consensus 178 ~l~~~i~ 184 (189)
T 2gf9_A 178 RLVDVIC 184 (189)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998774
No 74
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=2.7e-22 Score=193.25 Aligned_cols=147 Identities=27% Similarity=0.289 Sum_probs=111.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCC--CCcCCCCCcc-eEecCccCCCceeEEEEeCCCCCC-ChHHHHHHHHhcCc
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEF--PELVPSKAEE-ITIPPDVTPEMVPTHIVDYSEVDQ-TVDELTEEIQKAHV 83 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~--~~~~~~~~~~-~~i~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~ad~ 83 (608)
...+||+|+|++|||||||+++|++... ...++++... ......++...+.+.+|||+|++. +......+++.+|+
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~ 114 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 114 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence 4568999999999999999999997543 3333333221 222334556667889999999876 33444555678999
Q ss_pred EEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHH
Q psy3301 84 ICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEM 146 (608)
Q Consensus 84 iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~l 146 (608)
+++|||++++.+|+.+. .|...+.......++|+||||||+|+...+. ++|||++|.||+++
T Consensus 115 ~ilVydvt~~~sf~~~~-~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~el 193 (211)
T 2g3y_A 115 YLIVYSITDRASFEKAS-ELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKEL 193 (211)
T ss_dssp EEEEEETTCHHHHHHHH-HHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred EEEEEECCCHHHHHHHH-HHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999998 6877666422335799999999999965322 89999999999999
Q ss_pred HHHHHHHHh
Q psy3301 147 FYYAQKAVL 155 (608)
Q Consensus 147 f~~l~~~i~ 155 (608)
|.++.+.+.
T Consensus 194 f~~l~~~i~ 202 (211)
T 2g3y_A 194 FEGIVRQVR 202 (211)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998874
No 75
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.88 E-value=1.9e-22 Score=188.43 Aligned_cols=145 Identities=26% Similarity=0.367 Sum_probs=120.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceE--ecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEE
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEIT--IPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICL 86 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iil 86 (608)
+.+||+|+|++|||||||+++|+++.+.....++.+... ....+....+.+.+|||+|++.+...+..+++.+|++++
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~ 92 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVV 92 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 458999999999999999999999988776555443222 223345556789999999999999989999999999999
Q ss_pred EEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHH
Q psy3301 87 VYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYY 149 (608)
Q Consensus 87 V~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~ 149 (608)
|||++++.+++.+. .|+..+.. ....++|+++|+||+|+..... ++|||++|.|++++|++
T Consensus 93 v~d~~~~~s~~~~~-~~~~~i~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 170 (179)
T 2y8e_A 93 VYDITNTNSFHQTS-KWIDDVRT-ERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRR 170 (179)
T ss_dssp EEETTCHHHHHTHH-HHHHHHHH-HHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHH
T ss_pred EEECCCHHHHHHHH-HHHHHHHH-hcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999988 78887765 3446899999999999975432 89999999999999999
Q ss_pred HHHHHh
Q psy3301 150 AQKAVL 155 (608)
Q Consensus 150 l~~~i~ 155 (608)
+.+.+.
T Consensus 171 l~~~~~ 176 (179)
T 2y8e_A 171 VAAALP 176 (179)
T ss_dssp HHHTCC
T ss_pred HHHHHh
Confidence 988653
No 76
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.87 E-value=1e-21 Score=187.57 Aligned_cols=145 Identities=23% Similarity=0.378 Sum_probs=116.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEe--cCccCCCc----------------------------
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITI--PPDVTPEM---------------------------- 56 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i--~~~~~~~~---------------------------- 56 (608)
.+..+||+|+|++|||||||+++|++..+...+.++...... ...+....
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 345799999999999999999999999887665555432221 11222222
Q ss_pred ---------eeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCC
Q psy3301 57 ---------VPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDL 127 (608)
Q Consensus 57 ---------~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 127 (608)
+.+.||||||++.+...+..+++.+|++++|||++++.+++.+. .|+..+... .+.|+++|+||+|+
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~-~~~~~i~~~---~~~piilv~NK~D~ 159 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAK-TWVNQLKIS---SNYIIILVANKIDK 159 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHH-HHHHHHHHH---SCCEEEEEEECTTC
T ss_pred ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHH-HHHHHHHhh---CCCcEEEEEECCCc
Confidence 78999999999999999999999999999999999999999988 788888742 23899999999994
Q ss_pred CCCCC----------------cccCcccCcCHHHHHHHHHHHHh
Q psy3301 128 VDYST----------------VESSAKTLKNISEMFYYAQKAVL 155 (608)
Q Consensus 128 ~~~~~----------------~e~SAk~~~~i~~lf~~l~~~i~ 155 (608)
..... ++|||++|.|++++|+++.+.+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 203 (208)
T 3clv_A 160 NKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIY 203 (208)
T ss_dssp C-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHH
Confidence 32221 89999999999999999988775
No 77
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.87 E-value=1.8e-22 Score=192.35 Aligned_cols=147 Identities=12% Similarity=0.131 Sum_probs=118.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCC-cCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEE
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPE-LVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVIC 85 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 85 (608)
.....||+|+|++|||||||+++|++..+.. .+.++...... .+....+.+.||||+|++++...+..+++.+|++|
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 91 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--TFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVI 91 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--EEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEE
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--EEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEE
Confidence 4467899999999999999999999999887 55555442222 24567789999999999999998999999999999
Q ss_pred EEEEcCChhhHHHHHHhHHHHHhhhcc-------CCCCcEEEEEeCcCCCCCCC---------------------cccCc
Q psy3301 86 LVYSVVDDASIDRLSSHWLPFLRNCLV-------DTCLPIVLVGNKVDLVDYST---------------------VESSA 137 (608)
Q Consensus 86 lV~d~~~~~s~~~~~~~~~~~i~~~~~-------~~~~piilv~nK~Dl~~~~~---------------------~e~SA 137 (608)
+|||++++++|+.+. .|+..+..... ..++|++||+||+|+..... ++|||
T Consensus 92 ~v~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 170 (199)
T 4bas_A 92 FVVDSSDHLRLCVVK-SEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNG 170 (199)
T ss_dssp EEEETTCGGGHHHHH-HHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBT
T ss_pred EEEECCcHHHHHHHH-HHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeC
Confidence 999999999999998 56555542111 13889999999999987632 68999
Q ss_pred ccCcCHHHHHHHHHHHHhC
Q psy3301 138 KTLKNISEMFYYAQKAVLH 156 (608)
Q Consensus 138 k~~~~i~~lf~~l~~~i~~ 156 (608)
++|.||+++|+++.+.+..
T Consensus 171 ~~g~gv~~l~~~l~~~~~~ 189 (199)
T 4bas_A 171 LKGTGVHEGFSWLQETASR 189 (199)
T ss_dssp TTTBTHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHH
Confidence 9999999999999998864
No 78
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.87 E-value=2.5e-22 Score=192.16 Aligned_cols=146 Identities=26% Similarity=0.405 Sum_probs=122.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcc-eEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEE
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEE-ITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLV 87 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV 87 (608)
..+||+|+|++|||||||+++|.++.+...+.++... ......+....+.+.+|||+|++++...+..+++.+|++++|
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 103 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 103 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEE
Confidence 4689999999999999999999999887765554322 222334555668899999999999888888889999999999
Q ss_pred EEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCC------------C-----------------C-cccCc
Q psy3301 88 YSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDY------------S-----------------T-VESSA 137 (608)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~-----------------~-~e~SA 137 (608)
||++++++++.+...|...+.. ...++|+++|+||+|+... . . ++|||
T Consensus 104 ~d~~~~~s~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 181 (201)
T 2gco_A 104 FSIDSPDSLENIPEKWTPEVKH--FCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSA 181 (201)
T ss_dssp EETTCHHHHHHHHHTHHHHHHH--HSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EECCCHHHHHHHHHHHHHHHHH--hCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeC
Confidence 9999999999996689998884 3458999999999999764 1 1 78999
Q ss_pred ccCcCHHHHHHHHHHHHhC
Q psy3301 138 KTLKNISEMFYYAQKAVLH 156 (608)
Q Consensus 138 k~~~~i~~lf~~l~~~i~~ 156 (608)
++|.||+++|.++.+.++.
T Consensus 182 ~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 182 KTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp TTCTTHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999988753
No 79
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.87 E-value=3.7e-22 Score=188.21 Aligned_cols=145 Identities=15% Similarity=0.111 Sum_probs=116.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLV 87 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV 87 (608)
++.+||+++|++|||||||+++|+++. ...+.++...... .+...++.+.+|||||++++...+..+++.+|++++|
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~--~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNIK--TLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV 92 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEEE--EEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccceE--EEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 568999999999999999999999988 4444444332222 2223568899999999998888888889999999999
Q ss_pred EEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC--------------------cccCcccCcCHHHHH
Q psy3301 88 YSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST--------------------VESSAKTLKNISEMF 147 (608)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------------------~e~SAk~~~~i~~lf 147 (608)
||++++.+++.+. .|+..+.......++|+++|+||+|+..... ++|||++|.|++++|
T Consensus 93 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 171 (186)
T 1ksh_A 93 VDSADRQRMQDCQ-RELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGI 171 (186)
T ss_dssp EETTCGGGHHHHH-HHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred EECcCHHHHHHHH-HHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHH
Confidence 9999999999988 5655554322346799999999999976422 789999999999999
Q ss_pred HHHHHHHhC
Q psy3301 148 YYAQKAVLH 156 (608)
Q Consensus 148 ~~l~~~i~~ 156 (608)
+++.+.+..
T Consensus 172 ~~l~~~i~~ 180 (186)
T 1ksh_A 172 DWLLDDISS 180 (186)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998854
No 80
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.87 E-value=8.8e-23 Score=195.22 Aligned_cols=148 Identities=22% Similarity=0.288 Sum_probs=114.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCc--ceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcE
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAE--EITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVI 84 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 84 (608)
....+||+|+|++|||||||+++|+++.+.....++.+ .......+....+.+.||||+|++.+...+..+++.+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 101 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 101 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence 34579999999999999999999999988765444332 1222333445568899999999888877788899999999
Q ss_pred EEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHH
Q psy3301 85 CLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMF 147 (608)
Q Consensus 85 ilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf 147 (608)
|+|||++++.+++.+. .|+..+.. ....++|++||+||+|+..... ++|||++|.||+++|
T Consensus 102 i~v~d~~~~~s~~~~~-~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 179 (200)
T 2o52_A 102 LLVYDITSRETYNSLA-AWLTDART-LASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAF 179 (200)
T ss_dssp EEEEETTCHHHHHTHH-HHHHHHHH-HTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHH
T ss_pred EEEEECcCHHHHHHHH-HHHHHHHH-hcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 9999999999999988 78887775 3446899999999999964322 889999999999999
Q ss_pred HHHHHHHhC
Q psy3301 148 YYAQKAVLH 156 (608)
Q Consensus 148 ~~l~~~i~~ 156 (608)
.++.+.+..
T Consensus 180 ~~l~~~i~~ 188 (200)
T 2o52_A 180 LKCARTILN 188 (200)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988854
No 81
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=8.8e-22 Score=187.52 Aligned_cols=151 Identities=25% Similarity=0.307 Sum_probs=122.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcce-EecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEI-TIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICL 86 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iil 86 (608)
...+||+|+|++|||||||+++|+++.+...+.++.... .....+....+.+.+|||+|++.+...+..+++.+|++++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFIL 85 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEE
Confidence 457999999999999999999999998876554443322 2222345566789999999999999999999999999999
Q ss_pred EEEcCChhhHHHHHHhHHHHHhhh-ccCCCCcEEEEEeCcCCCCCCC----------------cccCcccCcCHHHHHHH
Q psy3301 87 VYSVVDDASIDRLSSHWLPFLRNC-LVDTCLPIVLVGNKVDLVDYST----------------VESSAKTLKNISEMFYY 149 (608)
Q Consensus 87 V~d~~~~~s~~~~~~~~~~~i~~~-~~~~~~piilv~nK~Dl~~~~~----------------~e~SAk~~~~i~~lf~~ 149 (608)
|||++++.+++.+. .|+..+... ....++|+++|+||+|+..... ++|||++|.||+++|++
T Consensus 86 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 164 (199)
T 2gf0_A 86 VFSVTSKQSLEELG-PIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQE 164 (199)
T ss_dssp EEETTCHHHHHTTH-HHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECcCHHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Confidence 99999999999988 566666542 1235789999999999976432 89999999999999999
Q ss_pred HHHHHhCCCC
Q psy3301 150 AQKAVLHPMA 159 (608)
Q Consensus 150 l~~~i~~~~~ 159 (608)
+.+.+.....
T Consensus 165 l~~~~~~~~~ 174 (199)
T 2gf0_A 165 LLTLETRRNM 174 (199)
T ss_dssp HHHHCSSSCE
T ss_pred HHHHHhhhhc
Confidence 9998865443
No 82
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=2.4e-22 Score=193.28 Aligned_cols=148 Identities=26% Similarity=0.397 Sum_probs=120.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcc-eEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEE
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEE-ITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLV 87 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV 87 (608)
..+||+|+|++|||||||+++|+++.+...+.++... ......+....+.+.||||+|++++......+++.+|++++|
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 103 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 103 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEE
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEE
Confidence 4689999999999999999999999987765454432 222334455668899999999999988888889999999999
Q ss_pred EEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCC-----------------------------C-cccCc
Q psy3301 88 YSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYS-----------------------------T-VESSA 137 (608)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-----------------------------~-~e~SA 137 (608)
||++++.+++.+...|+..+.. ...++|+++|+||+|+.... . ++|||
T Consensus 104 ~d~~~~~s~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 181 (207)
T 2fv8_A 104 FSVDSPDSLENIPEKWVPEVKH--FCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSA 181 (207)
T ss_dssp EETTCHHHHHHHHHTHHHHHHH--HSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EECCCHHHHHHHHHHHHHHHHH--hCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeC
Confidence 9999999999996689998884 34689999999999996541 1 78999
Q ss_pred ccCcCHHHHHHHHHHHHhCCC
Q psy3301 138 KTLKNISEMFYYAQKAVLHPM 158 (608)
Q Consensus 138 k~~~~i~~lf~~l~~~i~~~~ 158 (608)
++|.||+++|+++.+.++.+.
T Consensus 182 ~~g~gi~el~~~l~~~i~~~~ 202 (207)
T 2fv8_A 182 KTKEGVREVFETATRAALQKR 202 (207)
T ss_dssp TTCTTHHHHHHHHHHHHHSCC
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999987653
No 83
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.87 E-value=8.5e-22 Score=186.36 Aligned_cols=148 Identities=20% Similarity=0.322 Sum_probs=112.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCc-ceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAE-EITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICL 86 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iil 86 (608)
.+.+||+++|++|||||||+++|+++.+...+.++.. .......+....+.+.+|||+|++++...+..+++.+|++++
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 98 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEE
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEE
Confidence 4578999999999999999999999988766555432 222233445556789999999999998888999999999999
Q ss_pred EEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC----------------cccCcccCcCHHHHHHHH
Q psy3301 87 VYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST----------------VESSAKTLKNISEMFYYA 150 (608)
Q Consensus 87 V~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------------~e~SAk~~~~i~~lf~~l 150 (608)
|||+++..+++.+. .|+..+.......++|+++|+||+|+..... ++|||++|.|++++|.++
T Consensus 99 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 177 (190)
T 3con_A 99 VFAINNSKSFADIN-LYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTL 177 (190)
T ss_dssp EEETTCHHHHHHHH-HHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred EEECcCHHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999987 7888877543345799999999999976322 899999999999999999
Q ss_pred HHHHhC
Q psy3301 151 QKAVLH 156 (608)
Q Consensus 151 ~~~i~~ 156 (608)
.+.+..
T Consensus 178 ~~~~~~ 183 (190)
T 3con_A 178 VREIRQ 183 (190)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988753
No 84
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.87 E-value=1.9e-22 Score=195.45 Aligned_cols=151 Identities=21% Similarity=0.264 Sum_probs=121.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCcc---CCCceeEEEEeCCCCCCChHHHHHHHHhcCc
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDV---TPEMVPTHIVDYSEVDQTVDELTEEIQKAHV 83 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 83 (608)
....+||+|+|++|||||||+++|+++.+...+.++.........+ ....+.+.+|||+|++.+......+++.+|+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG 87 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence 3457999999999999999999999988876655554333222222 2233789999999999998888899999999
Q ss_pred EEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHH
Q psy3301 84 ICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEM 146 (608)
Q Consensus 84 iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~l 146 (608)
+++|||++++.+++.+. .|+..+.. ....++|+++|+||+|+..... ++|||++|.||+++
T Consensus 88 ~i~v~d~~~~~s~~~~~-~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l 165 (218)
T 4djt_A 88 AILFFDVTSRITCQNLA-RWVKEFQA-VVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLP 165 (218)
T ss_dssp EEEEEETTCHHHHHTHH-HHHHHHHH-HHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHH
T ss_pred EEEEEeCCCHHHHHHHH-HHHHHHHH-hcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Confidence 99999999999999998 89888875 3445689999999999986532 89999999999999
Q ss_pred HHHHHHHHhCCCC
Q psy3301 147 FYYAQKAVLHPMA 159 (608)
Q Consensus 147 f~~l~~~i~~~~~ 159 (608)
|.++.+.+.....
T Consensus 166 ~~~l~~~~~~~~~ 178 (218)
T 4djt_A 166 FLHLARIFTGRPD 178 (218)
T ss_dssp HHHHHHHHHCCTT
T ss_pred HHHHHHHHhcccc
Confidence 9999999976543
No 85
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.87 E-value=2.9e-22 Score=192.23 Aligned_cols=150 Identities=24% Similarity=0.311 Sum_probs=121.6
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcce--EecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCc
Q psy3301 6 SLRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEI--TIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHV 83 (608)
Q Consensus 6 ~~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 83 (608)
.....+||+|+|++|||||||+++|++..+...+.++.+.. .....+....+.+.||||||++.+...+..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (207)
T 1vg8_A 4 RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADC 83 (207)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcE
Confidence 45668999999999999999999999999877655554332 2233445566889999999999888877888999999
Q ss_pred EEEEEEcCChhhHHHHHHhHHHHHhhhcc---CCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCH
Q psy3301 84 ICLVYSVVDDASIDRLSSHWLPFLRNCLV---DTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNI 143 (608)
Q Consensus 84 iilV~d~~~~~s~~~~~~~~~~~i~~~~~---~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i 143 (608)
+|+|||++++.+++.+. .|+..+..... ..++|+++|+||+|+..... +++||++|.||
T Consensus 84 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 162 (207)
T 1vg8_A 84 CVLVFDVTAPNTFKTLD-SWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINV 162 (207)
T ss_dssp EEEEEETTCHHHHHTHH-HHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSH
T ss_pred EEEEEECCCHHHHHHHH-HHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence 99999999999999987 78887764311 25789999999999974322 89999999999
Q ss_pred HHHHHHHHHHHhC
Q psy3301 144 SEMFYYAQKAVLH 156 (608)
Q Consensus 144 ~~lf~~l~~~i~~ 156 (608)
+++|+++.+.+..
T Consensus 163 ~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 163 EQAFQTIARNALK 175 (207)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998853
No 86
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.87 E-value=7.3e-22 Score=187.55 Aligned_cols=145 Identities=21% Similarity=0.134 Sum_probs=114.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCC-----------CCcceEec--C-ccCCCceeEEEEeCCCCCCChHH
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPS-----------KAEEITIP--P-DVTPEMVPTHIVDYSEVDQTVDE 73 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~-----------~~~~~~i~--~-~~~~~~~~~~i~Dt~G~~~~~~~ 73 (608)
...+||+|+|++|||||||++.+. +.+...+.+ +....... . .+....+.+.||||+|++++...
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 90 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIY-SKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNAS 90 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHH-HTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHH
T ss_pred ccccEEEEECCCCCCHHHHHHHHH-hhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHH
Confidence 346899999999999999996555 444444322 11111111 1 34456788999999999999999
Q ss_pred HHHHHHhcCcEEEEEEcC------ChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC---------------
Q psy3301 74 LTEEIQKAHVICLVYSVV------DDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST--------------- 132 (608)
Q Consensus 74 ~~~~~~~ad~iilV~d~~------~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------------- 132 (608)
+..+++.+|++|+|||++ +.++|+.+. .|+..+. ....++|++||+||+|+.....
T Consensus 91 ~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~-~~l~~~~--~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 167 (198)
T 3t1o_A 91 RKLILRGVDGIVFVADSAPNRLRANAESMRNMR-ENLAEYG--LTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKFP 167 (198)
T ss_dssp HHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHH-HHHHHTT--CCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCCSC
T ss_pred HHHHHhcCCEEEEEEECCcchhhHhHHHHHHHH-HHHHhhc--cccCCCCEEEEEEchhcccccCHHHHHHHHHhcCCce
Confidence 999999999999999999 567788877 7888775 4567899999999999976532
Q ss_pred -cccCcccCcCHHHHHHHHHHHHhC
Q psy3301 133 -VESSAKTLKNISEMFYYAQKAVLH 156 (608)
Q Consensus 133 -~e~SAk~~~~i~~lf~~l~~~i~~ 156 (608)
++|||++|.||+++|+++.+.+..
T Consensus 168 ~~~~Sa~~~~gv~~l~~~l~~~i~~ 192 (198)
T 3t1o_A 168 VLEAVATEGKGVFETLKEVSRLVLA 192 (198)
T ss_dssp EEECBGGGTBTHHHHHHHHHHHHHH
T ss_pred EEEEecCCCcCHHHHHHHHHHHHHH
Confidence 899999999999999999988754
No 87
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.87 E-value=5.6e-22 Score=191.10 Aligned_cols=148 Identities=26% Similarity=0.377 Sum_probs=119.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceE--ecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcE
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEIT--IPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVI 84 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 84 (608)
....+||+|+|++|||||||+++|++..+.....++.+... ....+....+.+.||||||++.+...+..+++.+|++
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 96 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI 96 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 34579999999999999999999999988765444433222 2233444558899999999999888889999999999
Q ss_pred EEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC----------------cccCcccCcCHHHHHH
Q psy3301 85 CLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST----------------VESSAKTLKNISEMFY 148 (608)
Q Consensus 85 ilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------------~e~SAk~~~~i~~lf~ 148 (608)
++|||++++.+++.+. .|+..+.. ....++|+++|+||+|+..... ++|||++|.||+++|.
T Consensus 97 i~v~d~~~~~s~~~~~-~~~~~i~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 174 (213)
T 3cph_A 97 ILVYDVTDERTFTNIK-QWFKTVNE-HANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFF 174 (213)
T ss_dssp EEEEETTCHHHHHTHH-HHHHHHHH-HTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHH
T ss_pred EEEEECCCHHHHHHHH-HHHHHHHH-hcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999999988 78888775 3445789999999999954322 8999999999999999
Q ss_pred HHHHHHhC
Q psy3301 149 YAQKAVLH 156 (608)
Q Consensus 149 ~l~~~i~~ 156 (608)
++.+.+..
T Consensus 175 ~l~~~~~~ 182 (213)
T 3cph_A 175 TLAKLIQE 182 (213)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887743
No 88
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.87 E-value=6.7e-22 Score=187.22 Aligned_cols=146 Identities=20% Similarity=0.168 Sum_probs=115.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCC-CCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEE
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEE-FPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVIC 85 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 85 (608)
..+.+||+|+|++|||||||+++|++.. +...+.++..... ..+...++.+.+|||+|++++...+..+++.+|+++
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSI--EKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAII 95 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEE--EEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeE--EEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 3467999999999999999999999987 4554555443222 223344688999999999999988889999999999
Q ss_pred EEEEcCChhhHHHHHHhHHHHHhhhccC--CCCcEEEEEeCcCCCCCCC--------------------cccCcccCcCH
Q psy3301 86 LVYSVVDDASIDRLSSHWLPFLRNCLVD--TCLPIVLVGNKVDLVDYST--------------------VESSAKTLKNI 143 (608)
Q Consensus 86 lV~d~~~~~s~~~~~~~~~~~i~~~~~~--~~~piilv~nK~Dl~~~~~--------------------~e~SAk~~~~i 143 (608)
+|||++++.+++.+. .|+..+...... .++|+++|+||+|+..... ++|||++|.||
T Consensus 96 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 174 (190)
T 2h57_A 96 FVIDSSDRLRMVVAK-EELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGL 174 (190)
T ss_dssp EEEETTCHHHHHHHH-HHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTH
T ss_pred EEEECCCHHHHHHHH-HHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCH
Confidence 999999999999988 565555432222 5899999999999976421 78999999999
Q ss_pred HHHHHHHHHHHh
Q psy3301 144 SEMFYYAQKAVL 155 (608)
Q Consensus 144 ~~lf~~l~~~i~ 155 (608)
+++|+++.+.+.
T Consensus 175 ~~l~~~l~~~i~ 186 (190)
T 2h57_A 175 QEGVDWLQDQIQ 186 (190)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHH
Confidence 999999988763
No 89
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.87 E-value=6.1e-22 Score=187.76 Aligned_cols=142 Identities=18% Similarity=0.195 Sum_probs=112.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLV 87 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV 87 (608)
.+.+||+++|++|||||||++++.++.+.. +.++...... .+...++.+.+|||+|++++...+..+++.+|++++|
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~-~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 97 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTSE--ELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFL 97 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCCSCEEE--EEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCc-cccCCCCCeE--EEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 457899999999999999999999988765 3343333222 2333458999999999999888888889999999999
Q ss_pred EEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCC------------------------C---cccCcccC
Q psy3301 88 YSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYS------------------------T---VESSAKTL 140 (608)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~------------------------~---~e~SAk~~ 140 (608)
||++++++|+.+. .|+..+.......++|+++|+||+|+.... . ++|||++|
T Consensus 98 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 176 (190)
T 1m2o_B 98 VDAADPERFDEAR-VELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMR 176 (190)
T ss_dssp EETTCGGGHHHHH-HHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTT
T ss_pred EECCChHHHHHHH-HHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcC
Confidence 9999999999998 676666532234689999999999996421 1 78999999
Q ss_pred cCHHHHHHHHHHH
Q psy3301 141 KNISEMFYYAQKA 153 (608)
Q Consensus 141 ~~i~~lf~~l~~~ 153 (608)
.||+++|+++.+.
T Consensus 177 ~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 177 NGYLEAFQWLSQY 189 (190)
T ss_dssp BSHHHHHHHHHTT
T ss_pred CCHHHHHHHHHhh
Confidence 9999999998754
No 90
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.87 E-value=2.5e-22 Score=195.49 Aligned_cols=148 Identities=24% Similarity=0.325 Sum_probs=116.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcc--eEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEE--ITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVIC 85 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 85 (608)
...+||+|+|++|||||||+++|++..+.....++.+. ......+....+.+.||||+|++++...+..+++.+|++|
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 34689999999999999999999999987654443322 2222334455688999999999999888888999999999
Q ss_pred EEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHH
Q psy3301 86 LVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFY 148 (608)
Q Consensus 86 lV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~ 148 (608)
+|||++++.+++.+. .|+..+.. ....++|++||+||+|+..... +++||++|.||+++|.
T Consensus 91 lV~D~~~~~s~~~~~-~~l~~i~~-~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 168 (223)
T 3cpj_B 91 IVYDISKSSSYENCN-HWLSELRE-NADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFE 168 (223)
T ss_dssp EEEC-CCHHHHHHHH-HHHHHHHH-HCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHH
T ss_pred EEEeCCCHHHHHHHH-HHHHHHHH-hCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999988 79888875 3456889999999999975322 7899999999999999
Q ss_pred HHHHHHhCC
Q psy3301 149 YAQKAVLHP 157 (608)
Q Consensus 149 ~l~~~i~~~ 157 (608)
++.+.+...
T Consensus 169 ~l~~~i~~~ 177 (223)
T 3cpj_B 169 ELINTIYQK 177 (223)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHHH
Confidence 999998754
No 91
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.87 E-value=4.1e-22 Score=190.26 Aligned_cols=143 Identities=16% Similarity=0.186 Sum_probs=107.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLV 87 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV 87 (608)
.+.+||+++|++|||||||+++|.++.+.. +.++..... ..+...++.+.+|||||++++...+..+++.+|++++|
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~t~~~~~--~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 99 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTS--EELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFL 99 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCc-cCCCCCcee--EEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEE
Confidence 457899999999999999999999988754 333322211 12333458899999999999988888899999999999
Q ss_pred EEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCC-----------------------------CC---ccc
Q psy3301 88 YSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDY-----------------------------ST---VES 135 (608)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~-----------------------------~~---~e~ 135 (608)
||++++++|+.+. .|+..+.......++|+++|+||+|+... .. ++|
T Consensus 100 ~D~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (198)
T 1f6b_A 100 VDCADHERLLESK-EELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMC 178 (198)
T ss_dssp EETTCGGGHHHHH-HHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEEC
T ss_pred EECCCHHHHHHHH-HHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEE
Confidence 9999999999998 67666653223468999999999999631 11 789
Q ss_pred CcccCcCHHHHHHHHHHHH
Q psy3301 136 SAKTLKNISEMFYYAQKAV 154 (608)
Q Consensus 136 SAk~~~~i~~lf~~l~~~i 154 (608)
||++|.||+++|+++.+.+
T Consensus 179 SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 179 SVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp BTTTTBSHHHHHHHHHTTC
T ss_pred ECCCCCCHHHHHHHHHHhc
Confidence 9999999999999987643
No 92
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.87 E-value=1e-21 Score=186.57 Aligned_cols=147 Identities=26% Similarity=0.292 Sum_probs=109.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCC--CCCcCCCCC-cceEecCccCCCceeEEEEeCCCCCC-ChHHHHHHHHhcCc
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEE--FPELVPSKA-EEITIPPDVTPEMVPTHIVDYSEVDQ-TVDELTEEIQKAHV 83 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~--~~~~~~~~~-~~~~i~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~ad~ 83 (608)
...+||+|+|++|||||||+++|++.. +...++++. +.......+++..+.+.+|||+|.+. +......+++.+|+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 346899999999999999999999643 343333322 22222334556667889999999765 33445667899999
Q ss_pred EEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHH
Q psy3301 84 ICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEM 146 (608)
Q Consensus 84 iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~l 146 (608)
+++|||+++++||+.+. .|...+.......++|+++|+||+|+...+. ++|||++|.||+++
T Consensus 84 ~i~v~dv~~~~s~~~~~-~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l 162 (192)
T 2cjw_A 84 YLIVYSITDRASFEKAS-ELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL 162 (192)
T ss_dssp EEEEEETTCHHHHHHHH-HHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEECCCHHHHHHHH-HHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence 99999999999999988 6777666422345789999999999964322 78999999999999
Q ss_pred HHHHHHHHh
Q psy3301 147 FYYAQKAVL 155 (608)
Q Consensus 147 f~~l~~~i~ 155 (608)
|+.+.+.+.
T Consensus 163 f~~l~~~~~ 171 (192)
T 2cjw_A 163 FEGIVRQVR 171 (192)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998874
No 93
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.86 E-value=3.3e-22 Score=187.85 Aligned_cols=143 Identities=11% Similarity=0.089 Sum_probs=112.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEE
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICL 86 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iil 86 (608)
..+.+||+|+|++|||||||+++|+++.+.. +.++...... .+...++.+.+|||+|++++...+..+++.+|++++
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 94 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEVVH-TSPTIGSNVE--EIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIV 94 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSCEE-EECCSSSSCE--EEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEE
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCc-cCCcCceeeE--EEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 3467999999999999999999999998833 3333221111 122345889999999999998888889999999999
Q ss_pred EEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC--------------------cccCcccCcCHHHH
Q psy3301 87 VYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST--------------------VESSAKTLKNISEM 146 (608)
Q Consensus 87 V~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------------------~e~SAk~~~~i~~l 146 (608)
|||++++++++.+. .|+..+.......++|+++|+||+|+..... ++|||++|.||+++
T Consensus 95 v~D~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 173 (181)
T 2h17_A 95 VVDSTDRERISVTR-EELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQG 173 (181)
T ss_dssp EEETTCTTTHHHHH-HHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred EEECCCHHHHHHHH-HHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHH
Confidence 99999999999988 5555544212246899999999999976321 88999999999999
Q ss_pred HHHHHHH
Q psy3301 147 FYYAQKA 153 (608)
Q Consensus 147 f~~l~~~ 153 (608)
|+++.+.
T Consensus 174 ~~~l~~~ 180 (181)
T 2h17_A 174 LEWMMSR 180 (181)
T ss_dssp HHHHHTC
T ss_pred HHHHHhh
Confidence 9998754
No 94
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.86 E-value=3.3e-22 Score=193.58 Aligned_cols=148 Identities=21% Similarity=0.241 Sum_probs=118.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceE--ecCccCCC----------ceeEEEEeCCCCCCChHHHH
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEIT--IPPDVTPE----------MVPTHIVDYSEVDQTVDELT 75 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~--i~~~~~~~----------~~~~~i~Dt~G~~~~~~~~~ 75 (608)
...+||+|+|++|||||||+++|++..+...+.++..... ....+... .+.+.||||+|++.+...+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 4569999999999999999999999988654333322111 11222333 67899999999999988899
Q ss_pred HHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcc
Q psy3301 76 EEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAK 138 (608)
Q Consensus 76 ~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk 138 (608)
.+++.+|++|+|||++++.+++.+. .|+..+.......++|++||+||+|+..... ++|||+
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~-~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 181 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVR-NWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAA 181 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHH-HHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTT
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHH-HHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECC
Confidence 9999999999999999999999988 7888776422226899999999999975322 899999
Q ss_pred cCcCHHHHHHHHHHHHhC
Q psy3301 139 TLKNISEMFYYAQKAVLH 156 (608)
Q Consensus 139 ~~~~i~~lf~~l~~~i~~ 156 (608)
+|.||+++|.++.+.+..
T Consensus 182 ~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 182 TGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp TTBTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999988753
No 95
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.86 E-value=2.8e-21 Score=186.58 Aligned_cols=145 Identities=16% Similarity=0.180 Sum_probs=112.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCC-ceeEEEEeCCCCCCChH-HHHHHHHhcCcEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPE-MVPTHIVDYSEVDQTVD-ELTEEIQKAHVIC 85 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~i~Dt~G~~~~~~-~~~~~~~~ad~ii 85 (608)
++.+||+|+|++|||||||+++|+++.+...++++..... ...+... .+.+.||||||++++.. .+..+++.+|+++
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i 83 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSA-IYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVV 83 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEE-EEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeE-EEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEE
Confidence 4579999999999999999999999998877665543222 2334433 68899999999999887 6788899999999
Q ss_pred EEEEcCChh-hHHHHHHhHHHHHhhh-ccCCCCcEEEEEeCcCCCCCC--------------------------------
Q psy3301 86 LVYSVVDDA-SIDRLSSHWLPFLRNC-LVDTCLPIVLVGNKVDLVDYS-------------------------------- 131 (608)
Q Consensus 86 lV~d~~~~~-s~~~~~~~~~~~i~~~-~~~~~~piilv~nK~Dl~~~~-------------------------------- 131 (608)
+|||+++.. ++..+...|...+... ....++|++||+||+|+....
T Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~ 163 (214)
T 2fh5_B 84 FVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSST 163 (214)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC-----------
T ss_pred EEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCcc
Confidence 999999864 5666665777766532 234578999999999987541
Q ss_pred -------------------C---cccCcccC------cCHHHHHHHHHHH
Q psy3301 132 -------------------T---VESSAKTL------KNISEMFYYAQKA 153 (608)
Q Consensus 132 -------------------~---~e~SAk~~------~~i~~lf~~l~~~ 153 (608)
. ++|||++| .||+++|+++.+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 164 APAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp -CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred ccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 2 78999999 9999999999875
No 96
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.86 E-value=5.9e-22 Score=187.38 Aligned_cols=145 Identities=20% Similarity=0.174 Sum_probs=116.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLV 87 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV 87 (608)
++.+||+|+|++|||||||+++|.++.+....+ +...... .+...++.+.+|||||++++...+..+++.+|++++|
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-t~~~~~~--~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v 96 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVP-TVGVNLE--TLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYV 96 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECS-STTCCEE--EEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCC-CCceEEE--EEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEE
Confidence 568999999999999999999999888765333 2221111 1233468899999999999888888889999999999
Q ss_pred EEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC--------------------cccCcccCcCHHHHH
Q psy3301 88 YSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST--------------------VESSAKTLKNISEMF 147 (608)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------------------~e~SAk~~~~i~~lf 147 (608)
||++++++++.+. .|+..+.......++|+++|+||+|+..... ++|||++|.||+++|
T Consensus 97 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 175 (189)
T 2x77_A 97 VDSTDRDRMGVAK-HELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGM 175 (189)
T ss_dssp EETTCCTTHHHHH-HHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred EeCCCHHHHHHHH-HHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCccCHHHHH
Confidence 9999999999988 5555544223346899999999999976522 789999999999999
Q ss_pred HHHHHHHhC
Q psy3301 148 YYAQKAVLH 156 (608)
Q Consensus 148 ~~l~~~i~~ 156 (608)
+++.+.+..
T Consensus 176 ~~l~~~i~~ 184 (189)
T 2x77_A 176 DWLVERLRE 184 (189)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988753
No 97
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.85 E-value=7.7e-22 Score=185.28 Aligned_cols=144 Identities=17% Similarity=0.122 Sum_probs=112.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLV 87 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV 87 (608)
++.+||+|+|++|||||||+++++++.+.. +.++...... .+...++.+.+|||+|++++...+..+++.+|++++|
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVT-TKPTIGFNVE--TLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFV 92 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEE-ECSSTTCCEE--EEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCc-cCCcCccceE--EEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 568999999999999999999999887733 3333222111 1223458899999999999888888899999999999
Q ss_pred EEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC--------------------cccCcccCcCHHHHH
Q psy3301 88 YSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST--------------------VESSAKTLKNISEMF 147 (608)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------------------~e~SAk~~~~i~~lf 147 (608)
||++++.+++.+. .|+..+.......++|+++|+||+|+..... ++|||++|.||+++|
T Consensus 93 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 171 (183)
T 1moz_A 93 VDSTDKDRMSTAS-KELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGL 171 (183)
T ss_dssp EETTCTTTHHHHH-HHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHH
T ss_pred EECCCHHHHHHHH-HHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHH
Confidence 9999999999988 5666555322357899999999999976421 789999999999999
Q ss_pred HHHHHHHh
Q psy3301 148 YYAQKAVL 155 (608)
Q Consensus 148 ~~l~~~i~ 155 (608)
+++.+.+.
T Consensus 172 ~~l~~~~~ 179 (183)
T 1moz_A 172 DWLIDVIK 179 (183)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998774
No 98
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.85 E-value=5.3e-22 Score=190.34 Aligned_cols=145 Identities=21% Similarity=0.297 Sum_probs=87.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcC--CCCCcCCCCCcc--eEecCccCCC--ceeEEEEeCCCCCCChHHHHHHHHhcC
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSE--EFPELVPSKAEE--ITIPPDVTPE--MVPTHIVDYSEVDQTVDELTEEIQKAH 82 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~--~~~~~~~~~~~~--~~i~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~ad 82 (608)
..+||+|+|++|||||||+++|++. .+...+.++... ......+... .+.+.+|||+|++.+...+..+++.+|
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 98 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVY 98 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCc
Confidence 4589999999999999999999998 776555554431 1222233444 788999999999998888888899999
Q ss_pred cEEEEEEcCChhhHHHHHHhHHHHHhhhccC---CCCcEEEEEeCcCCCC-CCC-----------------cccCccc-C
Q psy3301 83 VICLVYSVVDDASIDRLSSHWLPFLRNCLVD---TCLPIVLVGNKVDLVD-YST-----------------VESSAKT-L 140 (608)
Q Consensus 83 ~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~-~~~-----------------~e~SAk~-~ 140 (608)
++++|||++++.+++.+. .|+..+... .. .++|++||+||+|+.. ... ++|||++ |
T Consensus 99 ~~i~v~d~~~~~s~~~~~-~~~~~i~~~-~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 176 (208)
T 2yc2_C 99 YAILVFDVSSMESFESCK-AWFELLKSA-RPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPG 176 (208)
T ss_dssp EEEEEEETTCHHHHHHHH-HHHHHHHHH-CSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC----
T ss_pred EEEEEEECCCHHHHHHHH-HHHHHHHHh-hcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCC
Confidence 999999999999999998 899888753 22 5899999999999976 322 8999999 9
Q ss_pred cCHHHHHHHHHHHHh
Q psy3301 141 KNISEMFYYAQKAVL 155 (608)
Q Consensus 141 ~~i~~lf~~l~~~i~ 155 (608)
.||+++|.++.+.+.
T Consensus 177 ~gi~~l~~~i~~~~~ 191 (208)
T 2yc2_C 177 KDADAPFLSIATTFY 191 (208)
T ss_dssp ---CHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999998875
No 99
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.85 E-value=8.3e-23 Score=195.14 Aligned_cols=147 Identities=24% Similarity=0.358 Sum_probs=112.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCc--ceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAE--EITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVIC 85 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 85 (608)
...+||+|+|++|||||||+++|+++.+.....++.+ .......+....+.+.||||+|++.+...+..+++.+|++|
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 3468999999999999999999999887765333222 22223334555688999999999999888888999999999
Q ss_pred EEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHH
Q psy3301 86 LVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFY 148 (608)
Q Consensus 86 lV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~ 148 (608)
+|||++++.+++.+. .|+..+.. ....++|++||+||+|+..... ++|||++|.||+++|.
T Consensus 111 ~v~d~~~~~s~~~~~-~~~~~i~~-~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~ 188 (199)
T 3l0i_B 111 VVYDVTDQESFNNVK-QWLQEIDR-YASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFM 188 (199)
T ss_dssp ECC-CCCSHHHHHHH-HHHHHHHS-CC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHH
T ss_pred EEEECCCHHHHHHHH-HHHHHHHH-hccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 999999999999998 79888875 3445899999999999975432 8999999999999999
Q ss_pred HHHHHHhC
Q psy3301 149 YAQKAVLH 156 (608)
Q Consensus 149 ~l~~~i~~ 156 (608)
++.+.+..
T Consensus 189 ~l~~~l~~ 196 (199)
T 3l0i_B 189 TMAAEIKK 196 (199)
T ss_dssp HHTTTTTT
T ss_pred HHHHHHHH
Confidence 99877653
No 100
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.84 E-value=3.8e-21 Score=183.13 Aligned_cols=144 Identities=19% Similarity=0.178 Sum_probs=107.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCC-CCcceEecCcc-CCCceeEEEEeCCCCCCChHHH---HHHHHhc
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPS-KAEEITIPPDV-TPEMVPTHIVDYSEVDQTVDEL---TEEIQKA 81 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~-~~~~~~i~~~~-~~~~~~~~i~Dt~G~~~~~~~~---~~~~~~a 81 (608)
..+.+||+|+|++|||||||++++.+......... ......+...+ ....+.+.+|||+|++++.... ..+++.+
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 96 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGT 96 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTC
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccC
Confidence 45689999999999999999998887533221111 11111111122 2566889999999999987776 8999999
Q ss_pred CcEEEEEEcCCh--hhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCC-------------------------C--
Q psy3301 82 HVICLVYSVVDD--ASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYS-------------------------T-- 132 (608)
Q Consensus 82 d~iilV~d~~~~--~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-------------------------~-- 132 (608)
|++|+|||++++ ++++.+. .|+..+. ....++|++||+||+|+.... .
T Consensus 97 ~~~i~v~d~~~~~~~~~~~~~-~~l~~~~--~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 173 (196)
T 3llu_A 97 GALIYVIDAQDDYMEALTRLH-ITVSKAY--KVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLS 173 (196)
T ss_dssp SEEEEEEETTSCCHHHHHHHH-HHHHHHH--HHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEE
T ss_pred CEEEEEEECCCchHHHHHHHH-HHHHHHH--hcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcc
Confidence 999999999997 6777776 6777665 345689999999999976421 1
Q ss_pred -cccCcccCcCHHHHHHHHHHHH
Q psy3301 133 -VESSAKTLKNISEMFYYAQKAV 154 (608)
Q Consensus 133 -~e~SAk~~~~i~~lf~~l~~~i 154 (608)
++|||++ .||+++|..+.+.+
T Consensus 174 ~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 174 FYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp EEEECTTS-THHHHHHHHHHHHT
T ss_pred eEEEEech-hhHHHHHHHHHHHh
Confidence 7999999 99999999998865
No 101
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.84 E-value=5.1e-21 Score=178.38 Aligned_cols=143 Identities=20% Similarity=0.295 Sum_probs=106.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCC--cCCCCCcceEecCccCCCceeEEEEeCCCCCCChHH--------HHHHH
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPE--LVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDE--------LTEEI 78 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~ 78 (608)
+.+||+|+|++|||||||+++|.+..+.. ..+++ +.......+...+..+.+|||+|++++... ...++
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGT-TRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEI 81 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTC-CCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCc-eeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence 56899999999999999999999887532 23332 222222233334567899999998764321 12468
Q ss_pred HhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC----------cccCcccCcCHHHHHH
Q psy3301 79 QKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST----------VESSAKTLKNISEMFY 148 (608)
Q Consensus 79 ~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~e~SAk~~~~i~~lf~ 148 (608)
+.+|++++|||++++.+++.. .|+..+.. ....++|+++|+||+|+..... ++|||++|.||+++|.
T Consensus 82 ~~ad~~i~v~D~~~~~s~~~~--~~~~~~~~-~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~ 158 (172)
T 2gj8_A 82 EQADRVLFMVDGTTTDAVDPA--EIWPEFIA-RLPAKLPITVVRNKADITGETLGMSEVNGHALIRLSARTGEGVDVLRN 158 (172)
T ss_dssp HTCSEEEEEEETTTCCCCSHH--HHCHHHHH-HSCTTCCEEEEEECHHHHCCCCEEEEETTEEEEECCTTTCTTHHHHHH
T ss_pred HhCCEEEEEEECCCCCCHHHH--HHHHHHHH-hcccCCCEEEEEECccCCcchhhhhhccCCceEEEeCCCCCCHHHHHH
Confidence 999999999999999887743 57776664 3345799999999999864321 8999999999999999
Q ss_pred HHHHHHh
Q psy3301 149 YAQKAVL 155 (608)
Q Consensus 149 ~l~~~i~ 155 (608)
++.+.+.
T Consensus 159 ~l~~~~~ 165 (172)
T 2gj8_A 159 HLKQSMG 165 (172)
T ss_dssp HHHHHC-
T ss_pred HHHHHhh
Confidence 9988763
No 102
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.84 E-value=3.5e-21 Score=198.34 Aligned_cols=145 Identities=16% Similarity=0.182 Sum_probs=115.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLV 87 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV 87 (608)
++.+||+|+|++|||||||+++|+++.+....+ +..... ..+...++.+.||||+|++.+...+..+++.+|++|+|
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~p-T~~~~~--~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV 239 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNV--ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 239 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEE-ETTEEE--EEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCccc-ccceEE--EEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 457899999999999999999999988765443 222222 22445678999999999999999999999999999999
Q ss_pred EEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC--------------------cccCcccCcCHHHHH
Q psy3301 88 YSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST--------------------VESSAKTLKNISEMF 147 (608)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------------------~e~SAk~~~~i~~lf 147 (608)
||++++.+|+.+...|...+.. ....++|++||+||+|+..... ++|||++|.||+++|
T Consensus 240 ~D~~~~~s~~~~~~~~~~~~~~-~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~ 318 (329)
T 3o47_A 240 VDSNDRERVNEAREELMRMLAE-DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 318 (329)
T ss_dssp EETTCSSSHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHH
T ss_pred EECCchHHHHHHHHHHHHHHhh-hccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHH
Confidence 9999999999998666665553 3446899999999999986543 789999999999999
Q ss_pred HHHHHHHhC
Q psy3301 148 YYAQKAVLH 156 (608)
Q Consensus 148 ~~l~~~i~~ 156 (608)
+++.+.+..
T Consensus 319 ~~l~~~l~~ 327 (329)
T 3o47_A 319 DWLSNQLRN 327 (329)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHHh
Confidence 999998754
No 103
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.74 E-value=1.2e-22 Score=194.84 Aligned_cols=145 Identities=26% Similarity=0.387 Sum_probs=119.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCC-cceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKA-EEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICL 86 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iil 86 (608)
++.+||+|+|++|||||||+++|+++.+.....++. ........+....+.+.+|||+|++++......+++.+|++++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 107 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLI 107 (204)
Confidence 457999999999999999999999988866544443 2222233345556778899999999999889999999999999
Q ss_pred EEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCC-----------------------------C-cccC
Q psy3301 87 VYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYS-----------------------------T-VESS 136 (608)
Q Consensus 87 V~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-----------------------------~-~e~S 136 (608)
|||++++.+++.+...|+..+.. ...++|+++|+||+|+.... . ++||
T Consensus 108 v~D~~~~~s~~~~~~~~~~~l~~--~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vS 185 (204)
T 3th5_A 108 CFSLVSPASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
Confidence 99999999999987689888874 34489999999999997532 1 7899
Q ss_pred cccCcCHHHHHHHHHHHH
Q psy3301 137 AKTLKNISEMFYYAQKAV 154 (608)
Q Consensus 137 Ak~~~~i~~lf~~l~~~i 154 (608)
|++|.||+++|+++.+.+
T Consensus 186 A~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 186 ALTQRGLKTVFDEAIRAV 203 (204)
Confidence 999999999999988765
No 104
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.83 E-value=3.6e-21 Score=181.34 Aligned_cols=144 Identities=15% Similarity=0.238 Sum_probs=106.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHcC--CCCCcCCCCCcceEecCcc-----CCCceeEEEEeCCCCCCChHHHHHHHHhcC
Q psy3301 10 NVRILLLGDRHVGKTSLILSLVSE--EFPELVPSKAEEITIPPDV-----TPEMVPTHIVDYSEVDQTVDELTEEIQKAH 82 (608)
Q Consensus 10 ~~kI~lvG~~~vGKTSLi~~l~~~--~~~~~~~~~~~~~~i~~~~-----~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad 82 (608)
.+||+|+|++|||||||+++|++. .+...+.++.........+ ....+.+.+|||+|++++......+++.+|
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 589999999999999999999985 3444344443322221111 235678999999999988887888999999
Q ss_pred cEEEEEEcCCh-hhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCC------------------------CcccCc
Q psy3301 83 VICLVYSVVDD-ASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYS------------------------TVESSA 137 (608)
Q Consensus 83 ~iilV~d~~~~-~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~------------------------~~e~SA 137 (608)
++++|||++++ .+++.+. .|+..+.. ...+.|++|||||+|+.+.. .+++||
T Consensus 82 ~~i~v~d~~~~~~s~~~~~-~~~~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMK-PWLFNIKA--RASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNA 158 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHH-HHHHHHHH--HCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCT
T ss_pred EEEEEEeCCcchhHHHHHH-HHHHHHHh--hCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEec
Confidence 99999999997 5888887 89988874 34578999999999986421 167999
Q ss_pred ccCc-CHHHHHHHHHHHHhC
Q psy3301 138 KTLK-NISEMFYYAQKAVLH 156 (608)
Q Consensus 138 k~~~-~i~~lf~~l~~~i~~ 156 (608)
+++. |+++++..+.+.+..
T Consensus 159 ~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 159 TEESDALAKLRKTIINESLN 178 (184)
T ss_dssp TSCCHHHHHHHHHHHHHHHC
T ss_pred ccCchhHHHHHHHHHHHHhc
Confidence 9996 999999999887754
No 105
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.83 E-value=2.9e-20 Score=171.87 Aligned_cols=138 Identities=19% Similarity=0.084 Sum_probs=99.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCCh------HHHHHHHH--h
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTV------DELTEEIQ--K 80 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~------~~~~~~~~--~ 80 (608)
+.++|+++|++|||||||+++|++..+.....+..+.......+...+..+.+|||+|++.+. .....+++ .
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK 81 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCC
Confidence 358999999999999999999999876443222211111111222345789999999998874 33455554 8
Q ss_pred cCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCC----C------------cccCcccCcCHH
Q psy3301 81 AHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYS----T------------VESSAKTLKNIS 144 (608)
Q Consensus 81 ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~----~------------~e~SAk~~~~i~ 144 (608)
+|++++|+|+++.++ .. .|+..+.. .++|+++|+||+|+.... . ++|||++|.||+
T Consensus 82 ~~~~i~v~D~~~~~~---~~-~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~v~ 153 (165)
T 2wji_A 82 PDLVVNIVDATALER---NL-YLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIE 153 (165)
T ss_dssp CSEEEEEEETTCHHH---HH-HHHHHHHH----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHH
T ss_pred CCEEEEEecCCchhH---hH-HHHHHHHh----cCCCEEEEEEchHhccccChhhHHHHHHHHhCCCEEEEEcCCCCCHH
Confidence 999999999988543 33 47666653 378999999999985321 1 899999999999
Q ss_pred HHHHHHHHHH
Q psy3301 145 EMFYYAQKAV 154 (608)
Q Consensus 145 ~lf~~l~~~i 154 (608)
++|+++.+.+
T Consensus 154 ~l~~~l~~~~ 163 (165)
T 2wji_A 154 ELKKAISIAV 163 (165)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998765
No 106
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.82 E-value=1.6e-20 Score=193.72 Aligned_cols=149 Identities=27% Similarity=0.392 Sum_probs=123.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcc-eEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEE
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEE-ITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVIC 85 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ii 85 (608)
.+..+||+++|++|||||||+++++++.+...+.++... ......+....+.+.+|||+|++.+......+++.+|+++
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred ccceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 356799999999999999999999999887665555422 2223344556677889999999999888888899999999
Q ss_pred EEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCC------------C-----------------C-ccc
Q psy3301 86 LVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDY------------S-----------------T-VES 135 (608)
Q Consensus 86 lV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~-----------------~-~e~ 135 (608)
+|||++++.+++.+...|+..+.. ...++|+++|+||+|+... . . ++|
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 309 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 309 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHH--HCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHh--hCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEe
Confidence 999999999999998789998884 3448999999999998643 0 1 789
Q ss_pred CcccCcCHHHHHHHHHHHHhCC
Q psy3301 136 SAKTLKNISEMFYYAQKAVLHP 157 (608)
Q Consensus 136 SAk~~~~i~~lf~~l~~~i~~~ 157 (608)
||++|.||+++|+.+.+.++++
T Consensus 310 Sa~~~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 310 SALTQRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC-
T ss_pred cCCCCcCHHHHHHHHHHHHhcC
Confidence 9999999999999999998765
No 107
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.82 E-value=9.6e-21 Score=176.81 Aligned_cols=144 Identities=16% Similarity=0.153 Sum_probs=108.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEE
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICL 86 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iil 86 (608)
..+.++|+|+|++|||||||+++|++..+.....+..+.......+...+..+.+|||||++.+...+..+++.+|++++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 84 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVIL 84 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEE
Confidence 45678999999999999999999999988765433322222222233445778999999999988877778899999999
Q ss_pred EEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------------cccCcccCcCH
Q psy3301 87 VYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------------VESSAKTLKNI 143 (608)
Q Consensus 87 V~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------------~e~SAk~~~~i 143 (608)
|||++++...+... ++..+. ..++|+++|+||+|+..... ++|||++|.||
T Consensus 85 v~d~~~~~~~~~~~--~l~~~~----~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 158 (178)
T 2lkc_A 85 VVAADDGVMPQTVE--AINHAK----AANVPIIVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGL 158 (178)
T ss_dssp EEETTCCCCHHHHH--HHHHHG----GGSCCEEEEEETTTSSCSCHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHH
T ss_pred EEECCCCCcHHHHH--HHHHHH----hCCCCEEEEEECccCCcCCHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCH
Confidence 99999853322222 222222 24789999999999975321 68999999999
Q ss_pred HHHHHHHHHHHhC
Q psy3301 144 SEMFYYAQKAVLH 156 (608)
Q Consensus 144 ~~lf~~l~~~i~~ 156 (608)
+++|+++.+.+..
T Consensus 159 ~~l~~~l~~~~~~ 171 (178)
T 2lkc_A 159 DHLLEMILLVSEM 171 (178)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhh
Confidence 9999999988754
No 108
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.82 E-value=1.1e-19 Score=199.91 Aligned_cols=204 Identities=17% Similarity=0.185 Sum_probs=133.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEe----------cCccCCCceeEEEEeCCCCCCChHHHHH
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITI----------PPDVTPEMVPTHIVDYSEVDQTVDELTE 76 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i----------~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 76 (608)
....+||+++|++|||||||+++|++..+...+.++...... ..+.....+.+.+|||+|++.+......
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 456799999999999999999999999887665554422211 1122334689999999999999998899
Q ss_pred HHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCccc
Q psy3301 77 EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKT 139 (608)
Q Consensus 77 ~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~ 139 (608)
+++.+|++|+|||+++.+. +. .|+..+.. ...++|+|||+||+|+..... ++|||++
T Consensus 118 ~l~~~d~ii~V~D~s~~~~---~~-~~~~~l~~--~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~ 191 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTDSN---KH-YWLRHIEK--YGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKN 191 (535)
T ss_dssp HHHSSEEEEEEECGGGGGG---HH-HHHHHHHH--HSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC--
T ss_pred HccCCcEEEEEEeCCCchh---HH-HHHHHHHH--hCCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCc
Confidence 9999999999999987644 34 78888884 345799999999999975432 8999999
Q ss_pred CcCHHHHHHHHHHHHhCCCCCccccccccChHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHH
Q psy3301 140 LKNISEMFYYAQKAVLHPMAPIYISDKQELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKI 219 (608)
Q Consensus 140 ~~~i~~lf~~l~~~i~~~~~~l~~~~~~~l~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~ 219 (608)
|.||+++++.+.+.+...... + ....+.....+++...... ++...++.+++..+.+.+ +.. .++++..+.+
T Consensus 192 g~gi~eL~~~l~~~~~~~~~~-~----~~~~~~~~~~l~~~l~~~~-~~~~~i~~~~~~~l~~~~-~~~-~~~~~~~~~~ 263 (535)
T 3dpu_A 192 GDGVESIAKSLKSAVLHPDSI-Y----GTPLAPSWIKVKEKLVEAT-TAQRYLNRTEVEKICNDS-GIT-DPGERKTLLG 263 (535)
T ss_dssp ---CTTHHHHHHHHHTCTTSG-G----GCCBCHHHHHHHHHHHHHH-HHSSEECHHHHHHHHHHT-TCC-CHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcccch-h----cccCchHHHHHHHHHHHhh-ccCCcccHHHHHHHHHHc-CCC-CHHHHHHHHH
Confidence 999999999999998764331 1 1122233333443332221 124578888888887763 332 4555666666
Q ss_pred HHHHh
Q psy3301 220 VIRKN 224 (608)
Q Consensus 220 ~~~~~ 224 (608)
.+...
T Consensus 264 ~L~~~ 268 (535)
T 3dpu_A 264 YLNNL 268 (535)
T ss_dssp HHHHT
T ss_pred HHHHC
Confidence 66554
No 109
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.81 E-value=4.4e-20 Score=201.48 Aligned_cols=146 Identities=19% Similarity=0.171 Sum_probs=118.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLV 87 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV 87 (608)
++.+||+|+|++|||||||+++|+++.+....+ +..... ..+...++.+.||||+|++.+...+..+++.+|++|+|
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~-T~~~~~--~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V 396 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIP-TVGFNV--ETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 396 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCCCCC-CSSEEE--EEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCCcCC-ccceeE--EEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 457999999999999999999999998766443 322222 23455678999999999999998889999999999999
Q ss_pred EEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC--------------------cccCcccCcCHHHHH
Q psy3301 88 YSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST--------------------VESSAKTLKNISEMF 147 (608)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------------------~e~SAk~~~~i~~lf 147 (608)
||++++++|+.+...|...+.. ....++|+|||+||+|+..... ++|||++|.||+++|
T Consensus 397 ~D~~~~~s~~~~~~~~~~~~~~-~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 475 (497)
T 3lvq_E 397 VDCADRDRIDEARQELHRIIND-REMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGL 475 (497)
T ss_dssp EETTCGGGHHHHHHHHHHHHTS-GGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHH
T ss_pred EECcchhHHHHHHHHHHHHhhh-hhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHH
Confidence 9999999999998444444432 3346899999999999975422 789999999999999
Q ss_pred HHHHHHHhCC
Q psy3301 148 YYAQKAVLHP 157 (608)
Q Consensus 148 ~~l~~~i~~~ 157 (608)
+++.+.+...
T Consensus 476 ~~l~~~~~~~ 485 (497)
T 3lvq_E 476 TWLTSNYKSK 485 (497)
T ss_dssp HHHHHHCC--
T ss_pred HHHHHHHHhc
Confidence 9999987543
No 110
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.81 E-value=1.2e-19 Score=177.21 Aligned_cols=147 Identities=15% Similarity=0.126 Sum_probs=104.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCC------CCC---hHHHHHHH
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEV------DQT---VDELTEEI 78 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~------~~~---~~~~~~~~ 78 (608)
.+.+||+|+|++|||||||+++|++..+.....+..+.......+...+..+.||||||+ +.. ...+..++
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 106 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALA 106 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhh
Confidence 457899999999999999999999988753221111221111222334578999999998 442 12234457
Q ss_pred HhcCcEEEEEEcCChhhHHHH-HHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC----------------------ccc
Q psy3301 79 QKAHVICLVYSVVDDASIDRL-SSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST----------------------VES 135 (608)
Q Consensus 79 ~~ad~iilV~d~~~~~s~~~~-~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------------------~e~ 135 (608)
..+|++|+|||++++.+|+.. ...|+..+. ....++|+++|+||+|+..... ++|
T Consensus 107 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~--~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (228)
T 2qu8_A 107 HINGVILFIIDISEQCGLTIKEQINLFYSIK--SVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSF 184 (228)
T ss_dssp TSSEEEEEEEETTCTTSSCHHHHHHHHHHHH--TCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred ccccEEEEEEecccccCcchHHHHHHHHHHH--HhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEE
Confidence 889999999999999887522 124666665 3345899999999999975321 789
Q ss_pred CcccCcCHHHHHHHHHHHHhC
Q psy3301 136 SAKTLKNISEMFYYAQKAVLH 156 (608)
Q Consensus 136 SAk~~~~i~~lf~~l~~~i~~ 156 (608)
||++|.||+++|.++.+.+..
T Consensus 185 SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 185 STLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp CTTTCTTHHHHHHHHHHHHHH
T ss_pred ecccCCCHHHHHHHHHHHHHH
Confidence 999999999999999998853
No 111
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.81 E-value=1.4e-19 Score=170.72 Aligned_cols=146 Identities=19% Similarity=0.099 Sum_probs=108.8
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCCh------HHHHHHHH
Q psy3301 6 SLRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTV------DELTEEIQ 79 (608)
Q Consensus 6 ~~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~------~~~~~~~~ 79 (608)
+.++.+||+++|++|||||||+++|++..+.....+..+.......+...+..+.+|||||++.+. .....+++
T Consensus 3 ~~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (188)
T 2wjg_A 3 SHMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYII 82 (188)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHh
Confidence 445679999999999999999999999765443333333333333344456889999999998874 34555665
Q ss_pred --hcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC----------------cccCcccCc
Q psy3301 80 --KAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST----------------VESSAKTLK 141 (608)
Q Consensus 80 --~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------------~e~SAk~~~ 141 (608)
.+|++++|+|+++ ++... .|...+.. .+.|+++|+||+|+..... ++|||+++.
T Consensus 83 ~~~~~~~i~v~d~~~---~~~~~-~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 154 (188)
T 2wjg_A 83 NEKPDLVVNIVDATA---LERNL-YLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKM 154 (188)
T ss_dssp HHCCSEEEEEEEGGG---HHHHH-HHHHHHHT----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTB
T ss_pred ccCCCEEEEEecchh---HHHHH-HHHHHHHh----cCCCEEEEEEhhhccccccchHHHHHHHHHhCCCeEEEEecCCC
Confidence 4999999999875 44454 67776663 4789999999999854321 899999999
Q ss_pred CHHHHHHHHHHHHhCCCC
Q psy3301 142 NISEMFYYAQKAVLHPMA 159 (608)
Q Consensus 142 ~i~~lf~~l~~~i~~~~~ 159 (608)
|++++|+++.+.+.....
T Consensus 155 ~v~~l~~~i~~~~~~~~~ 172 (188)
T 2wjg_A 155 GIEELKKAISIAVKDKKT 172 (188)
T ss_dssp SHHHHHHHHHHHHTTC--
T ss_pred CHHHHHHHHHHHHHhccC
Confidence 999999999999866443
No 112
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.81 E-value=7.1e-20 Score=196.62 Aligned_cols=192 Identities=15% Similarity=0.115 Sum_probs=123.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCC-cCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHH--------HHH
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPE-LVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELT--------EEI 78 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~--------~~~ 78 (608)
++.+||+|+|++|||||||+|+|++..... ...+.++...+...+...++++.||||||++++...+. .++
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 457899999999999999999999986432 12222344444444555678999999999987665443 256
Q ss_pred HhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC--------------cccCcccCcCHH
Q psy3301 79 QKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST--------------VESSAKTLKNIS 144 (608)
Q Consensus 79 ~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------------~e~SAk~~~~i~ 144 (608)
+.+|++++|+|++++.+++.+. .+...+.. . .++|+++|+||+|+..... ++|||++|.||+
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~-~~~~~l~~--l-~~~piIvV~NK~Dl~~~~~~~~~~l~~~~~~~~i~vSAktg~GI~ 386 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELT-EIRELKAA--H-PAAKFLTVANKLDRAANADALIRAIADGTGTEVIGISALNGDGID 386 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHH-HHHHHHHH--C-TTSEEEEEEECTTSCTTTHHHHHHHHHHHTSCEEECBTTTTBSHH
T ss_pred ccCCEEEEEEECCCCcchhhhH-HHHHHHHh--c-CCCCEEEEEECcCCCCccchhHHHHHhcCCCceEEEEECCCCCHH
Confidence 8899999999999998875433 33333332 1 2789999999999976531 889999999999
Q ss_pred HHHHHHHHHHh-CCCC----C-ccccccccChHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhc
Q psy3301 145 EMFYYAQKAVL-HPMA----P-IYISDKQELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRR 203 (608)
Q Consensus 145 ~lf~~l~~~i~-~~~~----~-l~~~~~~~l~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~ 203 (608)
++++++.+.+. .+.. + +...+.......+...|.++...++.+....+-..+++..+..
T Consensus 387 eL~~~i~~~~~~~~~~~~~~~~~~~~R~~~~l~~a~~~L~~~~~~l~~~~~~dl~a~~lr~a~~~ 451 (476)
T 3gee_A 387 TLKQHMGDLVKNLDKLHEASVLVTSLRHYEALRNASDALQNALELIAHESETELIAFELRAALDY 451 (476)
T ss_dssp HHHHHHTHHHHSSCCCCTTSCCCCSHHHHHHHHHHHHHHHHHHTTTTTTCCSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 99999999987 4321 1 1223344455677777888877776666677888888877554
No 113
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.81 E-value=4.4e-20 Score=174.19 Aligned_cols=142 Identities=21% Similarity=0.266 Sum_probs=110.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCC-----------CCCChHHHHHHHH
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSE-----------VDQTVDELTEEIQ 79 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G-----------~~~~~~~~~~~~~ 79 (608)
+||+|+|++|||||||+++|++..+.....+..+.......+. .+.+||||| ++.+...+..+++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 77 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIE 77 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999988765444333222222222 689999999 5566666777888
Q ss_pred h-cCcEEEEEEcCChhhHHHHHHhHHHH--------HhhhccCCCCcEEEEEeCcCCCCCCC------------------
Q psy3301 80 K-AHVICLVYSVVDDASIDRLSSHWLPF--------LRNCLVDTCLPIVLVGNKVDLVDYST------------------ 132 (608)
Q Consensus 80 ~-ad~iilV~d~~~~~s~~~~~~~~~~~--------i~~~~~~~~~piilv~nK~Dl~~~~~------------------ 132 (608)
. ++++++||++.|..+++.+...|... +.......++|+++|+||+|+.....
T Consensus 78 ~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 157 (190)
T 2cxx_A 78 DNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEID 157 (190)
T ss_dssp HHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCGGGHH
T ss_pred hhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhhhhccC
Confidence 7 99999999999999999886677653 11112335789999999999986531
Q ss_pred ---cccCcccCcCHHHHHHHHHHHHhC
Q psy3301 133 ---VESSAKTLKNISEMFYYAQKAVLH 156 (608)
Q Consensus 133 ---~e~SAk~~~~i~~lf~~l~~~i~~ 156 (608)
++|||++|.||+++|+++.+.+..
T Consensus 158 ~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 184 (190)
T 2cxx_A 158 KVFIPISAKFGDNIERLKNRIFEVIRE 184 (190)
T ss_dssp HHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCCHHHHHHHHHHhcch
Confidence 589999999999999999998754
No 114
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.80 E-value=1.9e-19 Score=164.89 Aligned_cols=137 Identities=18% Similarity=0.243 Sum_probs=98.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCc--CCCCCcceEecCccCCCceeEEEEeCCCCCCC-------hHHHHHHHHhc
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPEL--VPSKAEEITIPPDVTPEMVPTHIVDYSEVDQT-------VDELTEEIQKA 81 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~~~a 81 (608)
.||+++|++|||||||+++|.+..+... .+++ +.......+...+..+.+|||||++.+ ...+..+++.+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 80 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGV-TRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDA 80 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC------------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCc-eecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhC
Confidence 5899999999999999999999875421 2222 111111223334568999999998873 34456778999
Q ss_pred CcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-------------cccCcccCcCHHHHHH
Q psy3301 82 HVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-------------VESSAKTLKNISEMFY 148 (608)
Q Consensus 82 d~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-------------~e~SAk~~~~i~~lf~ 148 (608)
|++++|||++++.+.... .+...+.. .++|+++|+||+|+..... ++|||++|.|++++|+
T Consensus 81 ~~~i~v~d~~~~~~~~~~--~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 154 (161)
T 2dyk_A 81 EVVLFAVDGRAELTQADY--EVAEYLRR----KGKPVILVATKVDDPKHELYLGPLYGLGFGDPIPTSSEHARGLEELLE 154 (161)
T ss_dssp SEEEEEEESSSCCCHHHH--HHHHHHHH----HTCCEEEEEECCCSGGGGGGCGGGGGGSSCSCEECBTTTTBSHHHHHH
T ss_pred CEEEEEEECCCcccHhHH--HHHHHHHh----cCCCEEEEEECcccccchHhHHHHHhCCCCCeEEEecccCCChHHHHH
Confidence 999999999987554331 23333432 4689999999999975421 8999999999999999
Q ss_pred HHHHHH
Q psy3301 149 YAQKAV 154 (608)
Q Consensus 149 ~l~~~i 154 (608)
++.+.+
T Consensus 155 ~l~~~l 160 (161)
T 2dyk_A 155 AIWERL 160 (161)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 998764
No 115
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.80 E-value=6.6e-20 Score=196.16 Aligned_cols=187 Identities=15% Similarity=0.200 Sum_probs=131.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCC--cCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHH--------H
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPE--LVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTE--------E 77 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~--------~ 77 (608)
++.+||+|+|++|||||||+|+|++..+.. ..++ ++...+...+...+.++.||||+|+.++...+.. +
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~g-tT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPG-TTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTT-CCHHHHHHEEEETTEEEEECC--------------------CC
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCC-eeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 357899999999999999999999976542 2333 3333333344556788999999998766544333 4
Q ss_pred HHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-------------cccCcccCcCHH
Q psy3301 78 IQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-------------VESSAKTLKNIS 144 (608)
Q Consensus 78 ~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-------------~e~SAk~~~~i~ 144 (608)
++.+|++++|+|++++.+.... .|+..+. +.|+++|+||+|+..... +++||++|.|++
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~~--~i~~~l~------~~piivV~NK~Dl~~~~~~~~~~~~~~~~~~i~iSAktg~Gi~ 372 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGDQ--EIYEQVK------HRPLILVMNKIDLVEKQLITSLEYPENITQIVHTAAAQKQGID 372 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHHH--HHHHHHT------TSCEEEEEECTTSSCGGGSTTCCCCTTCCCEEEEBTTTTBSHH
T ss_pred hhcCCEEEEEeccCCCCCHHHH--HHHHhcc------CCcEEEEEECCCCCcchhhHHHHHhccCCcEEEEECCCCCCHH
Confidence 6789999999999998776652 4665554 369999999999975321 899999999999
Q ss_pred HHHHHHHHHHhCCCC-----C-ccccccccChHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhc
Q psy3301 145 EMFYYAQKAVLHPMA-----P-IYISDKQELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRR 203 (608)
Q Consensus 145 ~lf~~l~~~i~~~~~-----~-l~~~~~~~l~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~ 203 (608)
+++..+.+.+..... + ....+..+....+.+.|.++...++.+.+..+..++|+..++.
T Consensus 373 eL~~~i~~~~~~~~~~~~~~~~~~~~R~~~~L~~a~~~L~~~~~~l~~~~~~dl~a~~Lr~a~~~ 437 (462)
T 3geh_A 373 SLETAILEIVQTGKVQAADMDLAINQRQAAALTQAKMSLEQVQATITQQLPLDFWTIDLRGAIQA 437 (462)
T ss_dssp HHHHHHHHHHTTSSSSSCCSSCCCCHHHHHHHHHHHHHHHHHHHHTTTTCCGGGTHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCcccceechHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 999999999865431 1 1233444556678888888888887777788999998888664
No 116
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.79 E-value=4.2e-19 Score=169.34 Aligned_cols=146 Identities=25% Similarity=0.340 Sum_probs=117.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcce--EecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEE
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEI--TIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICL 86 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iil 86 (608)
..+||+|+|++|||||||+++|++..+.....++.+.. .....+.+..+.+.+||++|++.+......+++.++++++
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 83 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL 83 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEE
Confidence 36899999999999999999999998876655443222 2233445566788999999999888777888999999999
Q ss_pred EEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHH
Q psy3301 87 VYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYY 149 (608)
Q Consensus 87 V~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~ 149 (608)
|||+++..+++.+. .|+..+.. ....+.|+++|+||+|+..... +++||+++.|++++|+.
T Consensus 84 v~d~~~~~s~~~~~-~~~~~~~~-~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~ 161 (199)
T 2f9l_A 84 VYDIAKHLTYENVE-RWLKELRD-HADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKN 161 (199)
T ss_dssp EEETTCHHHHHTHH-HHHHHHHH-HSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEECcCHHHHHHHH-HHHHHHHH-hcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999887 68877764 2345789999999999975322 78999999999999999
Q ss_pred HHHHHhC
Q psy3301 150 AQKAVLH 156 (608)
Q Consensus 150 l~~~i~~ 156 (608)
+.+.+..
T Consensus 162 l~~~~~~ 168 (199)
T 2f9l_A 162 ILTEIYR 168 (199)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988753
No 117
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.79 E-value=3.7e-20 Score=183.95 Aligned_cols=148 Identities=21% Similarity=0.105 Sum_probs=103.1
Q ss_pred CCCccEEEEEcCC---------CCCHHHHHHHHHc---CCCCCcCCCCC-cceEecCc----------------cCCCce
Q psy3301 7 LRRNVRILLLGDR---------HVGKTSLILSLVS---EEFPELVPSKA-EEITIPPD----------------VTPEMV 57 (608)
Q Consensus 7 ~~~~~kI~lvG~~---------~vGKTSLi~~l~~---~~~~~~~~~~~-~~~~i~~~----------------~~~~~~ 57 (608)
....+||+|+|++ |||||||+++|++ ..+...+.++. +....... ++...+
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 95 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC 95 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence 3456999999999 9999999999999 45544443332 11111111 234568
Q ss_pred eEEEEe-----------------------CCCCCCChHHHHHHHH---------------------hcCcEEEEEEcCCh
Q psy3301 58 PTHIVD-----------------------YSEVDQTVDELTEEIQ---------------------KAHVICLVYSVVDD 93 (608)
Q Consensus 58 ~~~i~D-----------------------t~G~~~~~~~~~~~~~---------------------~ad~iilV~d~~~~ 93 (608)
.+.||| ++|++++...+..+++ +||++|+|||++++
T Consensus 96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~ 175 (255)
T 3c5h_A 96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRG 175 (255)
T ss_dssp CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-
T ss_pred EEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCC
Confidence 899999 3444444433333444 69999999999998
Q ss_pred --hhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC----------------cccCcccCcCHHHHHHHHHHHHh
Q psy3301 94 --ASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST----------------VESSAKTLKNISEMFYYAQKAVL 155 (608)
Q Consensus 94 --~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------------~e~SAk~~~~i~~lf~~l~~~i~ 155 (608)
.+|+.+. .|+..+.......++|++||+||+|+..... ++|||++|.||+++|.++.+.+.
T Consensus 176 ~~~s~~~~~-~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 176 MNRNFDDQL-KFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLID 254 (255)
T ss_dssp ---CHHHHH-HHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred chhhHHHHH-HHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 9999998 7888776432345799999999999864211 89999999999999999988763
No 118
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.78 E-value=1.4e-19 Score=194.34 Aligned_cols=186 Identities=19% Similarity=0.205 Sum_probs=133.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCC--CcCCCCCcceEecCccCCCceeEEEEeCCCCC-CCh--------HHHHHH
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFP--ELVPSKAEEITIPPDVTPEMVPTHIVDYSEVD-QTV--------DELTEE 77 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~-~~~--------~~~~~~ 77 (608)
+.++|+|+|.+|||||||+|+|++.++. ..++++ +...+...+...+.++.||||+|+. .+. .....+
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gT-T~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGT-TRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCC-SSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCe-eeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 4589999999999999999999998643 334433 3333333444467889999999987 553 234678
Q ss_pred HHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCC-------------C-cccCcccCcCH
Q psy3301 78 IQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYS-------------T-VESSAKTLKNI 143 (608)
Q Consensus 78 ~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-------------~-~e~SAk~~~~i 143 (608)
++.+|++|+|+|++++.+++... +++.+ .++|+++|+||+|+.... . +++||++|.||
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~--il~~l------~~~piivV~NK~DL~~~~~~~~~~~~~~~~~~~i~iSAktg~Gi 392 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK--ILERI------KNKRYLVVINKVDVVEKINEEEIKNKLGTDRHMVKISALKGEGL 392 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH--HHHHH------TTSSEEEEEEECSSCCCCCHHHHHHHHTCSTTEEEEEGGGTCCH
T ss_pred hhcccEEEEEecCCCCCCHHHHH--HHHHh------cCCCEEEEEECcccccccCHHHHHHHhcCCCcEEEEECCCCCCH
Confidence 99999999999999998877643 33332 267999999999997531 1 88999999999
Q ss_pred HHHHHHHHHHHhCC----C-CCccccccccChHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhc
Q psy3301 144 SEMFYYAQKAVLHP----M-APIYISDKQELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRR 203 (608)
Q Consensus 144 ~~lf~~l~~~i~~~----~-~~l~~~~~~~l~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~ 203 (608)
+++++++.+.+... . ..+...+..+...++.+.|.++...++.+-...+-..||+..+..
T Consensus 393 ~eL~~~l~~~~~~~~~~~~~~~~~~~R~~~~l~~a~~~L~~~~~~l~~~~~~~l~a~~lr~a~~~ 457 (482)
T 1xzp_A 393 EKLEESIYRETQEIFERGSDSLITNLRQKQLLENVKGHLEDAIKSLKEGMPVDMASIDLERALNL 457 (482)
T ss_dssp HHHHHHHHHHTHHHHHHHTTCSCCSHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcCCCCcceEhhHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 99999999876421 1 122233444556677777777766666655556667777666543
No 119
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=99.78 E-value=8.3e-20 Score=165.64 Aligned_cols=143 Identities=22% Similarity=0.277 Sum_probs=124.4
Q ss_pred cChHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHH
Q psy3301 168 ELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLF 247 (608)
Q Consensus 168 ~l~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~ 247 (608)
+++++.++.|+++|..+|.|++|.|+..||..+++. +|..++..++..++..++.+ ++|.|++++|+..+...
T Consensus 3 ~lt~eqi~el~~~F~~~D~d~~G~I~~~El~~~l~~-~~~~~~~~~~~~~~~~~d~~------~~g~i~~~ef~~~~~~~ 75 (148)
T 2lmt_A 3 ELTEEQIAEFKDAFVQFDKEGTGKIATRELGTLMRT-LGQNPTEAELQDLIAEAENN------NNGQLNFTEFCGIMAKQ 75 (148)
T ss_dssp SCCSHHHHHHHHHHHHHHCSSCCEEEGGGHHHHHHH-HTCCCCHHHHHHHHHHHHTT------STTEEEHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCeECHHHHHHHHHh-cCCCchHHHHHHHHHhcccC------CCCcccHHHHHHHHHHH
Confidence 578889999999999999999999999999999987 79999999999999999998 89999999999776532
Q ss_pred HhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCCC
Q psy3301 248 MQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPP 327 (608)
Q Consensus 248 ~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~~ 327 (608)
..... ..+.|+.+|+.||+|++|+|+.+||+.++..+|.
T Consensus 76 ~~~~~-----------------------------------------~~~~l~~aF~~~D~d~~G~I~~~El~~~l~~~g~ 114 (148)
T 2lmt_A 76 MRETD-----------------------------------------TEEEMREAFKIFDRDGDGFISPAELRFVMINLGE 114 (148)
T ss_dssp TTTTT-----------------------------------------THHHHHHHHHHHHSSCSSEECHHHHHHHHHHHTC
T ss_pred hcccC-----------------------------------------cHHHHHHHHHHHCCCCcCcCcHHHHHHHHHHcCc
Confidence 21100 1356889999999999999999999999999885
Q ss_pred CCCCCCccccccceecCCCCccchhhHHhHh
Q psy3301 328 ECPPWTDREMRAMVATNSKGWITMQGFLCYW 358 (608)
Q Consensus 328 ~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w 358 (608)
...+.++.++++.+|.|+||.|+|+||++..
T Consensus 115 ~~~~~e~~~l~~~~D~d~dG~I~~~EF~~~m 145 (148)
T 2lmt_A 115 KVTDEEIDEMIREADFDGDGMINYEEFVWMI 145 (148)
T ss_dssp CCCHHHHHHHHHHHCCSCCSSEEHHHHHHHH
T ss_pred cccHHHHHHHHHHhCCCCCCeEeHHHHHHHH
Confidence 5666667889999999999999999999754
No 120
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.78 E-value=2.5e-18 Score=175.44 Aligned_cols=144 Identities=15% Similarity=0.193 Sum_probs=114.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCc-CCCCCcceEecCccCCC-ceeEEEEeCCCCCCCh----------HHHH
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPEL-VPSKAEEITIPPDVTPE-MVPTHIVDYSEVDQTV----------DELT 75 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~-~~~~~~~~~i~~~~~~~-~~~~~i~Dt~G~~~~~----------~~~~ 75 (608)
...-.|+++|.+|||||||+|+|++..+... ..+.+++..+....... +..+.||||||+.+.. ....
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~ 87 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAK 87 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHH
Confidence 4457899999999999999999999987643 22223333333334444 7899999999987654 4567
Q ss_pred HHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCC-CCCC------------------cccC
Q psy3301 76 EEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLV-DYST------------------VESS 136 (608)
Q Consensus 76 ~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~------------------~e~S 136 (608)
.+++.+|++++|+|++++.+++... .|+..+.. .++|+++|+||+|+. .... +++|
T Consensus 88 ~~l~~aD~il~VvD~~~~~~~~~~~-~~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vS 162 (308)
T 3iev_A 88 QSLEEADVILFMIDATEGWRPRDEE-IYQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPIS 162 (308)
T ss_dssp HHHHHCSEEEEEEETTTBSCHHHHH-HHHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECB
T ss_pred HHhhcCCEEEEEEeCCCCCCchhHH-HHHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEe
Confidence 7889999999999999998888876 67887773 478999999999997 3221 8899
Q ss_pred cccCcCHHHHHHHHHHHHhC
Q psy3301 137 AKTLKNISEMFYYAQKAVLH 156 (608)
Q Consensus 137 Ak~~~~i~~lf~~l~~~i~~ 156 (608)
|++|.|++++|..+.+.+..
T Consensus 163 A~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 163 ALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp TTTTBSHHHHHHHHHHHSCB
T ss_pred CCCCCCHHHHHHHHHHhCcc
Confidence 99999999999999998853
No 121
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.78 E-value=5.5e-19 Score=167.54 Aligned_cols=138 Identities=20% Similarity=0.208 Sum_probs=99.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCC--cceEecCccCCCceeEEEEeCCC----------CCCChHHHH
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKA--EEITIPPDVTPEMVPTHIVDYSE----------VDQTVDELT 75 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~i~Dt~G----------~~~~~~~~~ 75 (608)
...++|+|+|++|||||||+++|++..+...+.+.. +.......+ +..+.+||||| ++.+...+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 97 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII---NDELHFVDVPGYGFAKVSKSEREAWGRMIE 97 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE---TTTEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE---CCcEEEEECCCCCccccCHHHHHHHHHHHH
Confidence 357999999999999999999999987654333221 111111111 12589999999 566666677
Q ss_pred HHHHhc---CcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC--------------------
Q psy3301 76 EEIQKA---HVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-------------------- 132 (608)
Q Consensus 76 ~~~~~a---d~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-------------------- 132 (608)
.+++.+ |++++|+|++++.++.... +...+.. .++|+++|+||+|+.....
T Consensus 98 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (195)
T 1svi_A 98 TYITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLKY----YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDEL 171 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEE
T ss_pred HHHhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHHH----cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCce
Confidence 888887 9999999999988877643 3333332 4789999999999976432
Q ss_pred cccCcccCcCHHHHHHHHHHHH
Q psy3301 133 VESSAKTLKNISEMFYYAQKAV 154 (608)
Q Consensus 133 ~e~SAk~~~~i~~lf~~l~~~i 154 (608)
++|||++|.||+++|+++.+.+
T Consensus 172 ~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 172 ILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEccCCCCHHHHHHHHHHHh
Confidence 8999999999999999998876
No 122
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.78 E-value=1e-18 Score=165.60 Aligned_cols=143 Identities=25% Similarity=0.349 Sum_probs=116.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcce--EecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEE
Q psy3301 10 NVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEI--TIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLV 87 (608)
Q Consensus 10 ~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV 87 (608)
.++|+|+|++|||||||+++|++..+.....++.+.. .....+.+..+.+.+||++|++++...+..+++.++++++|
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v 108 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLV 108 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEE
Confidence 5899999999999999999999998876655544322 22233455567788899999999888888889999999999
Q ss_pred EEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHHH
Q psy3301 88 YSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYYA 150 (608)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~l 150 (608)
||+++..+++.+. .|+..+.. ....+.|+++|+||+|+..... +++||+++.|++++|+.+
T Consensus 109 ~d~~~~~s~~~~~-~~~~~~~~-~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l 186 (191)
T 1oix_A 109 YDIAKHLTYENVE-RWLKELRD-HADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 186 (191)
T ss_dssp EETTCHHHHHTHH-HHHHHHHH-HSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EECcCHHHHHHHH-HHHHHHHH-hcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999998887 68877664 2345789999999999975322 789999999999999999
Q ss_pred HHHH
Q psy3301 151 QKAV 154 (608)
Q Consensus 151 ~~~i 154 (608)
.+.+
T Consensus 187 ~~~i 190 (191)
T 1oix_A 187 LTEI 190 (191)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8765
No 123
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.78 E-value=1.5e-18 Score=173.48 Aligned_cols=137 Identities=18% Similarity=0.126 Sum_probs=103.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHcCC-CCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCCh------HHHHHHHH--h
Q psy3301 10 NVRILLLGDRHVGKTSLILSLVSEE-FPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTV------DELTEEIQ--K 80 (608)
Q Consensus 10 ~~kI~lvG~~~vGKTSLi~~l~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~------~~~~~~~~--~ 80 (608)
.++|+++|++|||||||+++|++.. +..++++++ .......+.. +..+.+|||||++.+. .....++. .
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~t-v~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~ 80 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVT-VERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQR 80 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCC-CSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCc-EEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCC
Confidence 5799999999999999999999976 334454332 1112222333 6789999999998875 34566676 5
Q ss_pred cCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC----------------cccCcccCcCHH
Q psy3301 81 AHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST----------------VESSAKTLKNIS 144 (608)
Q Consensus 81 ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------------~e~SAk~~~~i~ 144 (608)
+|++++|+|+++.++.. .|...+.. .++|+++|+||+|+..... ++|||++|.||+
T Consensus 81 ~d~vi~V~D~t~~e~~~----~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~ 152 (272)
T 3b1v_A 81 ADSILNVVDATNLERNL----YLTTQLIE----TGIPVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGVD 152 (272)
T ss_dssp CSEEEEEEEGGGHHHHH----HHHHHHHH----TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBTTTTBSHH
T ss_pred CCEEEEEecCCchHhHH----HHHHHHHh----cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcCCCEEEEEccCCCCHH
Confidence 99999999999875542 45555552 4789999999999854321 899999999999
Q ss_pred HHHHHHHHHHhC
Q psy3301 145 EMFYYAQKAVLH 156 (608)
Q Consensus 145 ~lf~~l~~~i~~ 156 (608)
++|.++.+.+..
T Consensus 153 el~~~i~~~~~~ 164 (272)
T 3b1v_A 153 QVVKKAAHTTTS 164 (272)
T ss_dssp HHHHHHHHSCTT
T ss_pred HHHHHHHHHHhh
Confidence 999999887643
No 124
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Probab=99.78 E-value=2.1e-19 Score=161.85 Aligned_cols=140 Identities=19% Similarity=0.220 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHHHhc
Q psy3301 171 PECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQR 250 (608)
Q Consensus 171 ~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~~~~ 250 (608)
++....|+++|..+|.|++|.|+.+|+..+++. +|.+++.++++.++..++.+ ++|.|+|++|+.++......
T Consensus 2 ~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~-~g~~~~~~~~~~~~~~~d~~------~~g~i~~~eF~~~~~~~~~~ 74 (143)
T 2obh_A 2 EEQKQEIREAFDLFDADGTGTIDVKELKVAMRA-LGFEPKKEEIKKMISEIDKE------GTGKMNFGDFLTVMTQKMSE 74 (143)
T ss_dssp HHHHHHHHHHHHTTCTTCCSEEEGGGHHHHHHH-TTCCCCHHHHHHHHHHHTTT------CCSEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH-cCCCCCHHHHHHHHHHhCCC------CCCeeeHHHHHHHHHHHhcc
Confidence 456788999999999999999999999999987 79999999999999999888 79999999999876543211
Q ss_pred CCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCCCCCC
Q psy3301 251 GRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPECP 330 (608)
Q Consensus 251 ~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~~~~~ 330 (608)
....+.++.+|+.||+|++|+|+.+||+.+++..|....
T Consensus 75 -----------------------------------------~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~ 113 (143)
T 2obh_A 75 -----------------------------------------KDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLT 113 (143)
T ss_dssp -----------------------------------------HHHHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHTTCCCC
T ss_pred -----------------------------------------ccHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCC
Confidence 112467899999999999999999999999999885555
Q ss_pred CCCccccccceecCCCCccchhhHHhHh
Q psy3301 331 PWTDREMRAMVATNSKGWITMQGFLCYW 358 (608)
Q Consensus 331 ~~~~~~~~~~~d~~~~g~i~~~ef~~~w 358 (608)
+.++.++++.+|.|++|.|+|+||+..+
T Consensus 114 ~~~~~~~~~~~D~d~dG~I~~~eF~~~~ 141 (143)
T 2obh_A 114 DEELQEMIDEADRDGDGEVSEQEFLRIM 141 (143)
T ss_dssp HHHHHHHHHHHCTTSSSSBCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcEeHHHHHHHH
Confidence 5667899999999999999999999865
No 125
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.78 E-value=4.8e-19 Score=180.67 Aligned_cols=144 Identities=14% Similarity=0.135 Sum_probs=109.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCC--Cc-CCCCCcceEecCccCCCceeEEEEeCCCCCCC-----hHHHHHHHHh
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFP--EL-VPSKAEEITIPPDVTPEMVPTHIVDYSEVDQT-----VDELTEEIQK 80 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~--~~-~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~-----~~~~~~~~~~ 80 (608)
..+||+++|++|||||||+++++++... .. +.++.+.......+. .++.+.+|||||++.+ ......++++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFL-GNMTLNLWDCGGQDVFMENYFTKQKDHIFQM 80 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEET-TTEEEEEEEECCSHHHHHHHHTTTHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeC-CceEEEEEECCCcHHHhhhhhhhHHHHHhcc
Confidence 4689999999999999999999988433 22 333333222222232 3789999999999887 5567888899
Q ss_pred cCcEEEEEEcCChhhHHHHHHhHHHHHhhh-ccCCCCcEEEEEeCcCCCC--CC----------------------C--c
Q psy3301 81 AHVICLVYSVVDDASIDRLSSHWLPFLRNC-LVDTCLPIVLVGNKVDLVD--YS----------------------T--V 133 (608)
Q Consensus 81 ad~iilV~d~~~~~s~~~~~~~~~~~i~~~-~~~~~~piilv~nK~Dl~~--~~----------------------~--~ 133 (608)
+|++|+|||++++++++.+. .|...+... ...+++|+++|+||+|+.. .. . +
T Consensus 81 ad~vi~V~D~t~~~s~~~l~-~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~ 159 (307)
T 3r7w_A 81 VQVLIHVFDVESTEVLKDIE-IFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGF 159 (307)
T ss_dssp CSEEEEEEETTCSCHHHHHH-HHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEE
T ss_pred CCEEEEEEECCChhhHHHHH-HHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEE
Confidence 99999999999999999987 565544332 3356899999999999976 11 1 7
Q ss_pred ccCcccCcCHHHHHHHHHHHHh
Q psy3301 134 ESSAKTLKNISEMFYYAQKAVL 155 (608)
Q Consensus 134 e~SAk~~~~i~~lf~~l~~~i~ 155 (608)
+|||++ .|+.++|..+.+.+.
T Consensus 160 ~tSa~~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 160 PTSIWD-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp ECCTTS-SHHHHHHHHHHHTTC
T ss_pred EeeecC-ChHHHHHHHHHHHHc
Confidence 899999 789999988887653
No 126
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=99.77 E-value=3.1e-19 Score=162.84 Aligned_cols=142 Identities=14% Similarity=0.191 Sum_probs=118.6
Q ss_pred cccccChHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHH
Q psy3301 164 SDKQELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFL 243 (608)
Q Consensus 164 ~~~~~l~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l 243 (608)
++...++++.++.|+++|..+|.|++|.|+..||..++++ +|..++.+++..++. . +++.|+|++|+.+
T Consensus 5 ~~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~-lg~~~~~~~~~~~~~----~------~~~~i~f~ef~~~ 73 (153)
T 3i5g_B 5 PRRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSS-LGRVPPDDELNAMLK----E------CPGQLNFTAFLTL 73 (153)
T ss_dssp --CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHH-TTSCCCHHHHHHHHH----T------SSSCCCSHHHHHT
T ss_pred ccccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHH-cCCCccHHHHHHHHH----h------ccCCccHHHHHHH
Confidence 3456799999999999999999999999999999999997 899999988877653 3 4788999999976
Q ss_pred HHHHHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhc
Q psy3301 244 HNLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFS 323 (608)
Q Consensus 244 ~~~~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~ 323 (608)
+....... . ..+.|+.+|+.||+|++|+|+.+||+.++.
T Consensus 74 ~~~~~~~~---------------------------------------~--~~~~l~~aF~~fD~d~~G~I~~~el~~~l~ 112 (153)
T 3i5g_B 74 FGEKVSGT---------------------------------------D--PEDALRNAFSMFDEDGQGFIPEDYLKDLLE 112 (153)
T ss_dssp TTTTTTTC---------------------------------------C--CHHHHHHHHHTTCSSCSSCCCHHHHHHHHH
T ss_pred HHhhhccc---------------------------------------c--cHHHHHHHHhccccCCCCeEeHHHHHHHHH
Confidence 53211100 0 136799999999999999999999999999
Q ss_pred cCCCCCCCCCccccccceecCCCCccchhhHHhHh
Q psy3301 324 LCPPECPPWTDREMRAMVATNSKGWITMQGFLCYW 358 (608)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w 358 (608)
.+|.+.++.++.++++.+|.| ||.|+|+||+..+
T Consensus 113 ~~g~~ls~~ei~~~~~~~D~~-dG~I~y~EF~~~m 146 (153)
T 3i5g_B 113 NMGDNFSKEEIKNVWKDAPLK-NKQFNYNKMVDIK 146 (153)
T ss_dssp SSSSCCCHHHHHHHHTTCCEE-TTEECHHHHHHHH
T ss_pred HcCCcCCHHHHHHHHHHhCCC-cCEEcHHHHHHHh
Confidence 998666666688999999998 9999999999864
No 127
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.77 E-value=1.3e-18 Score=172.86 Aligned_cols=140 Identities=17% Similarity=0.065 Sum_probs=106.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCc-CCCCCcceEecCccCCCceeEEEEeCCCCCCChH------HHHHHH--
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPEL-VPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVD------ELTEEI-- 78 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~------~~~~~~-- 78 (608)
++.++|+|+|++|||||||+++|++..+... ++.+ +.......+...+..+.+|||||+..+.. ....++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~-tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~ 81 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGV-TVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLK 81 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTS-CCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCc-eEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhh
Confidence 3468999999999999999999999876533 3332 33333334444568899999999887653 234555
Q ss_pred HhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC----------------cccCcccCcC
Q psy3301 79 QKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST----------------VESSAKTLKN 142 (608)
Q Consensus 79 ~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------------~e~SAk~~~~ 142 (608)
..+|++++|+|+++.++.. .|...+.. .++|+++|+||+|+..... +++||++|.|
T Consensus 82 ~~~d~ii~V~D~t~~~~~~----~~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~g 153 (258)
T 3a1s_A 82 GDADLVILVADSVNPEQSL----YLLLEILE----MEKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEG 153 (258)
T ss_dssp SCCSEEEEEEETTSCHHHH----HHHHHHHT----TTCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTT
T ss_pred cCCCEEEEEeCCCchhhHH----HHHHHHHh----cCCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcC
Confidence 4899999999999876543 35555542 3789999999999854321 8999999999
Q ss_pred HHHHHHHHHHHHhC
Q psy3301 143 ISEMFYYAQKAVLH 156 (608)
Q Consensus 143 i~~lf~~l~~~i~~ 156 (608)
++++|..+.+.+..
T Consensus 154 i~el~~~i~~~~~~ 167 (258)
T 3a1s_A 154 LEELKEKIVEYAQK 167 (258)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999998754
No 128
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.77 E-value=4.9e-19 Score=178.85 Aligned_cols=137 Identities=16% Similarity=0.203 Sum_probs=99.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCc---CCCCCcceEecCccCCCceeEEEEeCCCCCCChH---HHHHHHHhcCcEE
Q psy3301 12 RILLLGDRHVGKTSLILSLVSEEFPEL---VPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVD---ELTEEIQKAHVIC 85 (608)
Q Consensus 12 kI~lvG~~~vGKTSLi~~l~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~---~~~~~~~~ad~ii 85 (608)
||+++|+.|||||||++++.++.+... +.++....... + ...+++.||||+|+++|.. ....++++++++|
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v-~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~I 77 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F-STLIDLAVMELPGQLNYFEPSYDSERLFKSVGALV 77 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E-CSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E-ccEEEEEEEECCCchhccchhhhhhhhccCCCEEE
Confidence 799999999999999999886654332 22222111111 1 2358899999999999964 4688999999999
Q ss_pred EEEEcCCh--hhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCC-------------------------C---ccc
Q psy3301 86 LVYSVVDD--ASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYS-------------------------T---VES 135 (608)
Q Consensus 86 lV~d~~~~--~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-------------------------~---~e~ 135 (608)
+|||++++ ++++.+. .|+..+. ...+++|++|||||+|+.... . ++|
T Consensus 78 lV~Ditd~~~~~~~~l~-~~l~~~~--~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT 154 (331)
T 3r7w_B 78 YVIDSQDEYINAITNLA-MIIEYAY--KVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT 154 (331)
T ss_dssp EECCCSSCTTHHHHHHH-HHHHHHH--HHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred EEEECCchHHHHHHHHH-HHHHHHh--hcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence 99999998 2223222 2344444 235689999999999997531 0 799
Q ss_pred CcccCcCHHHHHHHHHHHHh
Q psy3301 136 SAKTLKNISEMFYYAQKAVL 155 (608)
Q Consensus 136 SAk~~~~i~~lf~~l~~~i~ 155 (608)
||++ .||.++|..+.+.++
T Consensus 155 SAkd-~nV~eAFs~iv~~li 173 (331)
T 3r7w_B 155 SIFD-HSIYEAFSRIVQKLI 173 (331)
T ss_dssp CSSS-SHHHHHHHHHHTTSS
T ss_pred ccCC-CcHHHHHHHHHHHHH
Confidence 9997 589999998887665
No 129
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=99.77 E-value=2.2e-19 Score=167.95 Aligned_cols=143 Identities=27% Similarity=0.336 Sum_probs=123.0
Q ss_pred cChHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHH
Q psy3301 168 ELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLF 247 (608)
Q Consensus 168 ~l~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~ 247 (608)
.++++.++.|+++|..+|.|++|.|+..||..+++. +|..+++.++..++..++.+ ++|.|+|++|+.++...
T Consensus 4 ~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~-lg~~~~~~~~~~~~~~~d~d------~~~~i~~~ef~~~~~~~ 76 (176)
T 2lhi_A 4 NLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRS-LGLSPSEAEVNDLMNEIDVD------GNHQIEFSEFLALMSRQ 76 (176)
T ss_dssp CCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHH-HTCCCCHHHHHHHHTTTCSS------CSSSBCTTHHHHHHTSS
T ss_pred cCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH-cCCChhHHHHHHHHHHhCcC------CCccchHHHHHHHHHHh
Confidence 567788889999999999999999999999999997 79999999999999988887 79999999999765310
Q ss_pred HhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCCC
Q psy3301 248 MQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPP 327 (608)
Q Consensus 248 ~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~~ 327 (608)
. -.....+.|+.+|+.||+|++|+|+.+||+.++..+|.
T Consensus 77 ~-----------------------------------------~~~~~~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g~ 115 (176)
T 2lhi_A 77 L-----------------------------------------KSNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGE 115 (176)
T ss_dssp C-----------------------------------------CSSHHHHHHHHHHHHHCSSCSSSBCHHHHHHHHHTTTC
T ss_pred c-----------------------------------------ccCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCc
Confidence 0 01112467999999999999999999999999999986
Q ss_pred CCCCCCccccccceecCCCCccchhhHHhHhh
Q psy3301 328 ECPPWTDREMRAMVATNSKGWITMQGFLCYWI 359 (608)
Q Consensus 328 ~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~ 359 (608)
...+.++.++++.+| |+||.|+|+||++.+.
T Consensus 116 ~~~~~ei~~l~~~~d-d~dG~I~~~EF~~~m~ 146 (176)
T 2lhi_A 116 KLTDAEVDDMLREVS-DGSGEINIQQFAALLS 146 (176)
T ss_dssp CCCHHHHHHHHHHHH-TTSSCBCTTHHHHHHT
T ss_pred ccchHHHHHHHHhhc-CCCCeEeHHHHHHHHH
Confidence 666666888999999 9999999999998764
No 130
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=99.76 E-value=3.1e-19 Score=183.49 Aligned_cols=150 Identities=21% Similarity=0.306 Sum_probs=128.9
Q ss_pred ccccccccChHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhH
Q psy3301 161 IYISDKQELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGF 240 (608)
Q Consensus 161 l~~~~~~~l~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F 240 (608)
.+.+....++++.++.|+++|+.+|.|++|.|+.+||..+++. +|..+++++++++++.++.+ ++|.|+|+||
T Consensus 288 ~wePs~E~Lt~EEI~ELREaF~~fDkDgdG~IS~eELk~aLrs-LG~~~TeeEI~~Lf~~~D~D------gDG~IdFeEF 360 (440)
T 3u0k_A 288 GWEPTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRS-LGQNPTEAELQDMINEVDAD------GDGTIDFPEF 360 (440)
T ss_dssp EECCBCBCCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHH-TTCCCCHHHHHHHHHHHCSS------CSSSEEHHHH
T ss_pred hhHhhHhhhhHHHHHHHHHHHHHHcCCCCCEECHHHHHHHHHH-cCCCCCHHHHHHHHHHhCCC------CCCcCcHHHH
Confidence 3456677899999999999999999999999999999999997 79999999999999999998 8999999999
Q ss_pred HHHHHHHHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHH
Q psy3301 241 LFLHNLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQAR 320 (608)
Q Consensus 241 ~~l~~~~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~ 320 (608)
+.++...+... ...+.|+++|+.||+|++|+|+.+||+.
T Consensus 361 l~lms~~lk~~-----------------------------------------d~eeeLreAFk~fDkDgdG~IS~eELr~ 399 (440)
T 3u0k_A 361 LIMMARKMKDT-----------------------------------------DSEEEIREAFRVFDKDGNGYISAAELRH 399 (440)
T ss_dssp HHHHHTC-----------------------------------------------CHHHHHHHHHHCTTCSSEECHHHHHH
T ss_pred HHHHHHHhcCC-----------------------------------------ChHHHHHHHHHHHCCCCcCcCCHHHHHH
Confidence 97764321110 0125688999999999999999999999
Q ss_pred hhccCCCCCCCCCccccccceecCCCCccchhhHHhHh
Q psy3301 321 LFSLCPPECPPWTDREMRAMVATNSKGWITMQGFLCYW 358 (608)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w 358 (608)
++..+|....+.+++++++.+|.|+||.|+|+||++..
T Consensus 400 vL~~lGe~LSdeEIdeLfke~D~DgDGkIsyeEFvkmM 437 (440)
T 3u0k_A 400 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM 437 (440)
T ss_dssp HHHHHTCCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHh
Confidence 99998855666667899999999999999999999753
No 131
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=99.76 E-value=2.3e-19 Score=164.78 Aligned_cols=146 Identities=13% Similarity=0.219 Sum_probs=119.8
Q ss_pred cChHHHHHHHHHHHHhccC--CCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHH
Q psy3301 168 ELTPECIKALTRIFKVCDL--DNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHN 245 (608)
Q Consensus 168 ~l~~~~~~~L~~~f~~~D~--d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~ 245 (608)
+++++.++.++++|..+|. |++|.|+..||..+++. +|..+++++++.+... +.+ ++|.|+|++|+.++.
T Consensus 2 qLt~eqi~elre~F~~fD~~~d~dG~I~~~El~~~lr~-lG~~~t~~el~~~~~~-d~~------~~g~i~f~eFl~~~~ 73 (159)
T 3i5g_C 2 QLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRC-LGMNPTEAQVHQHGGT-KKM------GEKAYKLEEILPIYE 73 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSSSCEEGGGHHHHHHH-TTCCCCHHHHHTTTCC-SST------TSCEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCcCCCCCCeECHHHHHHHHHH-cCCCCCHHHHHHHHcc-ccc------CCCcccHHHHHHHHH
Confidence 6789999999999999995 89999999999999997 8999999998876532 222 478999999998876
Q ss_pred HHHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccC
Q psy3301 246 LFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLC 325 (608)
Q Consensus 246 ~~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~ 325 (608)
........ ...+.|+.+|+.||+|++|+|+.+||+.++..+
T Consensus 74 ~~~~~~~~---------------------------------------~~~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~ 114 (159)
T 3i5g_C 74 EMSSKDTG---------------------------------------TAADEFMEAFKTFDREGQGLISSAEIRNVLKML 114 (159)
T ss_dssp HHTTCCTT---------------------------------------CCHHHHHHHHHHHCTTSSSEECHHHHHHHHHHS
T ss_pred Hhhccccc---------------------------------------chHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHh
Confidence 43322110 114568999999999999999999999999999
Q ss_pred CCCCCCCCccccccceec--CCCCccchhhHHhHhhh
Q psy3301 326 PPECPPWTDREMRAMVAT--NSKGWITMQGFLCYWIL 360 (608)
Q Consensus 326 ~~~~~~~~~~~~~~~~d~--~~~g~i~~~ef~~~w~~ 360 (608)
|.+.++.++.++++.+|. |++|.|+|+||+....-
T Consensus 115 g~~ls~~e~~~l~~~~D~~~d~dG~I~~~EF~~~m~~ 151 (159)
T 3i5g_C 115 GERITEDQCNDIFTFCDIREDIDGNIKYEDLMKKVMA 151 (159)
T ss_dssp SSCCCHHHHHHHHHHTTCCCCSSCCEEHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCcCCCCCCeEeHHHHHHHHHC
Confidence 866666667888888885 88999999999987643
No 132
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.76 E-value=2.1e-18 Score=170.97 Aligned_cols=135 Identities=16% Similarity=0.083 Sum_probs=102.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChH----------HHHHHH--
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVD----------ELTEEI-- 78 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~----------~~~~~~-- 78 (608)
.+|+++|++|||||||+++|++..+.....+..+.......+...+..+.+|||||+..+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 81 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID 81 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence 48999999999999999999998754432233333333334444566899999999987754 345566
Q ss_pred HhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC----------------cccCcccCcC
Q psy3301 79 QKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST----------------VESSAKTLKN 142 (608)
Q Consensus 79 ~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------------~e~SAk~~~~ 142 (608)
+.+|++++|+|+++.++...+. ..+. ..++|+++|+||+|+..... +++||++|.|
T Consensus 82 ~~~d~vi~VvDas~~~~~~~l~----~~l~----~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~g 153 (256)
T 3iby_A 82 LEYDCIINVIDACHLERHLYLT----SQLF----ELGKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIG 153 (256)
T ss_dssp SCCSEEEEEEEGGGHHHHHHHH----HHHT----TSCSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGGTBS
T ss_pred CCCCEEEEEeeCCCchhHHHHH----HHHH----HcCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCCCCC
Confidence 7899999999999876654433 3333 24789999999999865432 8999999999
Q ss_pred HHHHHHHHHHH
Q psy3301 143 ISEMFYYAQKA 153 (608)
Q Consensus 143 i~~lf~~l~~~ 153 (608)
++++|+.+.+.
T Consensus 154 i~el~~~i~~~ 164 (256)
T 3iby_A 154 IPALQQSLLHC 164 (256)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhh
Confidence 99999999887
No 133
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.75 E-value=3.3e-18 Score=171.54 Aligned_cols=140 Identities=13% Similarity=0.061 Sum_probs=104.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChH----------HHHHHH
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVD----------ELTEEI 78 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~----------~~~~~~ 78 (608)
+.++|+++|.+|||||||+|+|++..+.....+..+.......+...+..+.+|||||+..+.. ....++
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 4689999999999999999999998764433333333333334444567899999999887652 123333
Q ss_pred --HhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC----------------cccCcccC
Q psy3301 79 --QKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST----------------VESSAKTL 140 (608)
Q Consensus 79 --~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------------~e~SAk~~ 140 (608)
+.+|++++|+|+++.++... |...+.. .++|+++|+||+|+..... +++||++|
T Consensus 82 ~~~~~d~ii~VvD~~~~~~~~~----~~~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i~~SA~~g 153 (274)
T 3i8s_A 82 LSGDADLLINVVDASNLERNLY----LTLQLLE----LGIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRG 153 (274)
T ss_dssp HHTCCSEEEEEEEGGGHHHHHH----HHHHHHH----HTCCEEEEEECHHHHHHTTEEECHHHHHHHHTSCEEECCCGGG
T ss_pred hhcCCCEEEEEecCCChHHHHH----HHHHHHh----cCCCEEEEEECccchhhhhHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 69999999999998665443 3334442 2689999999999865332 89999999
Q ss_pred cCHHHHHHHHHHHHhC
Q psy3301 141 KNISEMFYYAQKAVLH 156 (608)
Q Consensus 141 ~~i~~lf~~l~~~i~~ 156 (608)
.|++++|..+.+.+..
T Consensus 154 ~gi~el~~~i~~~~~~ 169 (274)
T 3i8s_A 154 RGIEALKLAIDRYKAN 169 (274)
T ss_dssp HHHHHHHHHHHTCCCC
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999887654
No 134
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.75 E-value=4e-18 Score=161.28 Aligned_cols=140 Identities=16% Similarity=0.161 Sum_probs=99.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCC----------CCCChHHHHHH
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSE----------VDQTVDELTEE 77 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G----------~~~~~~~~~~~ 77 (608)
...+||+|+|++|||||||+++|++..+....+... .+........+..+.+||||| ++.+...+..+
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~--~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPG--KTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDY 98 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCC--CCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCC--CccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHHH
Confidence 356899999999999999999999988543211111 111111111234588999999 55566666777
Q ss_pred HHhc---CcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC--------------------cc
Q psy3301 78 IQKA---HVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST--------------------VE 134 (608)
Q Consensus 78 ~~~a---d~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------------------~e 134 (608)
++.+ |++++|+|+++..+..... +...+.. .++|+++|+||+|+..... ++
T Consensus 99 ~~~~~~~~~vi~v~d~~~~~~~~~~~--~~~~~~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (195)
T 3pqc_A 99 FKNRWSLQMVFLLVDGRIPPQDSDLM--MVEWMKS----LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIP 172 (195)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEE
T ss_pred HhcCcCceEEEEEecCCCCCCHHHHH--HHHHHHH----cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEE
Confidence 7776 9999999998764433321 2222332 2689999999999975432 88
Q ss_pred cCcccCcCHHHHHHHHHHHHh
Q psy3301 135 SSAKTLKNISEMFYYAQKAVL 155 (608)
Q Consensus 135 ~SAk~~~~i~~lf~~l~~~i~ 155 (608)
|||++|.||+++|+++.+.+.
T Consensus 173 ~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 173 TSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp CCTTTCTTHHHHHHHHHHHHC
T ss_pred EecCCCCCHHHHHHHHHHHhh
Confidence 999999999999999998774
No 135
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=99.75 E-value=1.8e-18 Score=156.47 Aligned_cols=144 Identities=24% Similarity=0.334 Sum_probs=124.3
Q ss_pred cChHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHH
Q psy3301 168 ELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLF 247 (608)
Q Consensus 168 ~l~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~ 247 (608)
.++++....++++|..+|.|++|.|+..|+..+++. +|..++..+++.++..++.+ ++|.|+|++|+.++...
T Consensus 3 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~-~g~~~~~~~~~~l~~~~d~~------~~g~i~~~eF~~~~~~~ 75 (148)
T 1exr_A 3 QLTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRS-LGQNPTEAELQDMINEVDAD------GNGTIDFPEFLSLMARK 75 (148)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHH-HTCCCCHHHHHHHHHHHCTT------CSSSEEHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH-cCCCCCHHHHHHHHHHHCCC------CCCcCcHHHHHHHHHhc
Confidence 467788899999999999999999999999999987 79999999999999999888 79999999999877543
Q ss_pred HhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCCC
Q psy3301 248 MQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPP 327 (608)
Q Consensus 248 ~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~~ 327 (608)
... ....+.++.+|+.||+|++|+|+.+||+.++..+|.
T Consensus 76 ~~~-----------------------------------------~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~ 114 (148)
T 1exr_A 76 MKE-----------------------------------------QDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGE 114 (148)
T ss_dssp HHH-----------------------------------------HHHHHHHHHHHHHHSTTCSSCBCHHHHHHHHHHTTC
T ss_pred ccC-----------------------------------------CCcHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHhCC
Confidence 221 112456888999999999999999999999999885
Q ss_pred CCCCCCccccccceecCCCCccchhhHHhHhh
Q psy3301 328 ECPPWTDREMRAMVATNSKGWITMQGFLCYWI 359 (608)
Q Consensus 328 ~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~ 359 (608)
...+.++..+++.+|.|++|.|+|+||+..+.
T Consensus 115 ~~~~~~~~~~~~~~d~d~dg~i~~~eF~~~~~ 146 (148)
T 1exr_A 115 KLTDDEVDEMIREADIDGDGHINYEEFVRMMV 146 (148)
T ss_dssp CCCHHHHHHHHHHHCSSSSSSBCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHc
Confidence 55556678899999999999999999998763
No 136
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.74 E-value=3.7e-18 Score=173.17 Aligned_cols=143 Identities=17% Similarity=0.210 Sum_probs=106.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCc-CCCCCcceEecCccCCCceeEEEEeCCCCCCC--------hHHHHHHHH
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPEL-VPSKAEEITIPPDVTPEMVPTHIVDYSEVDQT--------VDELTEEIQ 79 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~--------~~~~~~~~~ 79 (608)
+..+|+|+|.+|||||||+|+|++..+... ..+.+++..+...+...+..+.+|||||+... ......+++
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~ 85 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALA 85 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHh
Confidence 456899999999999999999999987642 22222333333233456789999999998763 344567789
Q ss_pred hcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCC-C--------------CcccCcccCcCHH
Q psy3301 80 KAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDY-S--------------TVESSAKTLKNIS 144 (608)
Q Consensus 80 ~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~-~--------------~~e~SAk~~~~i~ 144 (608)
.+|++++|+|++++.+... ..+...+.. ...++|+++|+||+|+... . .+++||++|.|++
T Consensus 86 ~ad~il~VvD~~~~~~~~~--~~i~~~l~~--~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gv~ 161 (301)
T 1wf3_A 86 DVNAVVWVVDLRHPPTPED--ELVARALKP--LVGKVPILLVGNKLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVA 161 (301)
T ss_dssp SCSEEEEEEETTSCCCHHH--HHHHHHHGG--GTTTSCEEEEEECGGGCSSHHHHHHHHHHTSTTSEEEECCTTCHHHHH
T ss_pred cCCEEEEEEECCCCCChHH--HHHHHHHHh--hcCCCCEEEEEECcccCCchHHHHHHHHHhcCcCcEEEEeCCCCCCHH
Confidence 9999999999998765543 233455553 2347899999999999753 1 1889999999999
Q ss_pred HHHHHHHHHHh
Q psy3301 145 EMFYYAQKAVL 155 (608)
Q Consensus 145 ~lf~~l~~~i~ 155 (608)
++++.+.+.+.
T Consensus 162 ~l~~~l~~~l~ 172 (301)
T 1wf3_A 162 ELKADLLALMP 172 (301)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHHhcc
Confidence 99999988663
No 137
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.74 E-value=5.6e-18 Score=164.32 Aligned_cols=145 Identities=15% Similarity=0.081 Sum_probs=103.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCC---CcCCCCCcceEecCccC-CCceeEEEEeCCCCCC----------ChHH
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFP---ELVPSKAEEITIPPDVT-PEMVPTHIVDYSEVDQ----------TVDE 73 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~---~~~~~~~~~~~i~~~~~-~~~~~~~i~Dt~G~~~----------~~~~ 73 (608)
...++|+|+|++|||||||+++|++..+. ...+.+ +.......+. ..+..+.||||||... +...
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 105 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGR-TQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL 105 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCS-CCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCc-ccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence 35689999999999999999999998732 222222 2221122222 4567899999999533 3555
Q ss_pred HHHHHHh---cCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCC-------------------
Q psy3301 74 LTEEIQK---AHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYS------------------- 131 (608)
Q Consensus 74 ~~~~~~~---ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~------------------- 131 (608)
+..+++. +|++++|+|+++..+... ..|+..+.. .++|+++|+||+|+....
T Consensus 106 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~l~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 179 (223)
T 4dhe_A 106 LSSYLQTRPQLCGMILMMDARRPLTELD--RRMIEWFAP----TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDA 179 (223)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHGG----GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcCcCEEEEEEeCCCCCCHHH--HHHHHHHHh----cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhc
Confidence 6677777 777999999988654332 246666653 478999999999987521
Q ss_pred ---C----cccCcccCcCHHHHHHHHHHHHhCCCC
Q psy3301 132 ---T----VESSAKTLKNISEMFYYAQKAVLHPMA 159 (608)
Q Consensus 132 ---~----~e~SAk~~~~i~~lf~~l~~~i~~~~~ 159 (608)
. ++|||++|.||+++|+++.+.+..+..
T Consensus 180 ~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~~ 214 (223)
T 4dhe_A 180 GYAGKLTVQLFSALKRTGLDDAHALIESWLRPAAA 214 (223)
T ss_dssp TCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC----
T ss_pred ccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccCC
Confidence 1 789999999999999999998865433
No 138
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.74 E-value=1.1e-17 Score=161.70 Aligned_cols=120 Identities=17% Similarity=0.230 Sum_probs=92.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHh----cC
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQK----AH 82 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~----ad 82 (608)
....++|+|+|++|||||||+++|++..+....+.... ++..++ ..+.+.+|||||++.+...+..+++. +|
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~--~~~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 84 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEP--LSAADY--DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVK 84 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSC--EEETTG--GGSSCEEEECCCCGGGTHHHHHHHHHHGGGEE
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCc--eEEEEe--eCceEEEEECCCcHHHHHHHHHHHHhccccCC
Confidence 44678999999999999999999999887653221111 222222 56789999999999999888888888 99
Q ss_pred cEEEEEEcC-ChhhHHHHHHhHHHHHhhhc---cCCCCcEEEEEeCcCCCCCC
Q psy3301 83 VICLVYSVV-DDASIDRLSSHWLPFLRNCL---VDTCLPIVLVGNKVDLVDYS 131 (608)
Q Consensus 83 ~iilV~d~~-~~~s~~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~ 131 (608)
++++|||++ +++++..+. .|+..+.... ...++|+++|+||+|+....
T Consensus 85 ~~i~v~D~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 136 (218)
T 1nrj_B 85 GLIFMVDSTVDPKKLTTTA-EFLVDILSITESSCENGIDILIACNKSELFTAR 136 (218)
T ss_dssp EEEEEEETTSCTTCCHHHH-HHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred EEEEEEECCCChHHHHHHH-HHHHHHHhcccccccCCCCEEEEEEchHhcccC
Confidence 999999999 889999888 5555554321 34689999999999997654
No 139
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.73 E-value=1.3e-17 Score=167.00 Aligned_cols=142 Identities=17% Similarity=0.022 Sum_probs=104.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChH------HHHHHH--Hh
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVD------ELTEEI--QK 80 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~------~~~~~~--~~ 80 (608)
+.+||+++|++|||||||+++|++..+.....+..+.......+...+..+.+|||||+..+.. ....++ ..
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGN 81 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTC
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccC
Confidence 4689999999999999999999998764433333333333333444567799999999887755 455555 68
Q ss_pred cCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC----------------cccCcccCcCHH
Q psy3301 81 AHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST----------------VESSAKTLKNIS 144 (608)
Q Consensus 81 ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------------~e~SAk~~~~i~ 144 (608)
+|++++|+|+++.+. .. .|...+.. ...+|+++|+||+|+..... +++||++|.|++
T Consensus 82 ~d~vi~v~D~~~~~~---~~-~~~~~~~~---~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~ 154 (271)
T 3k53_A 82 ADVIVDIVDSTCLMR---NL-FLTLELFE---MEVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEGVE 154 (271)
T ss_dssp CSEEEEEEEGGGHHH---HH-HHHHHHHH---TTCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTBTHH
T ss_pred CcEEEEEecCCcchh---hH-HHHHHHHh---cCCCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCCCHH
Confidence 999999999998643 22 33333332 12389999999999754221 899999999999
Q ss_pred HHHHHHHHHHhCC
Q psy3301 145 EMFYYAQKAVLHP 157 (608)
Q Consensus 145 ~lf~~l~~~i~~~ 157 (608)
++|..+.+.+...
T Consensus 155 ~l~~~i~~~~~~~ 167 (271)
T 3k53_A 155 ELKRMIALMAEGK 167 (271)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcc
Confidence 9999999988654
No 140
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.72 E-value=7.4e-18 Score=155.68 Aligned_cols=142 Identities=18% Similarity=0.190 Sum_probs=95.7
Q ss_pred ceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecc-------eEeCCcceeEe-eeeccccc-----
Q psy3301 408 NVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINT-------TTVYGQEKYLV-LKEILVRD----- 474 (608)
Q Consensus 408 ~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~-------~~v~Gqe~~~~-l~~~~~~~----- 474 (608)
+++||+|+|++|||||||+++|++..+...+.++++.+.+...+.+++ .+++|+++|.. ++..+++.
T Consensus 1 ~~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i 80 (169)
T 3q85_A 1 GVFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFL 80 (169)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEE
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEE
Confidence 468999999999999999999998887766655554423333333433 23489988865 66655554
Q ss_pred -ccccCCCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHH
Q psy3301 475 -EQLPVLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREV 542 (608)
Q Consensus 475 -v~d~~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~ 542 (608)
+|| +++.+ ..+. +.....++|+++||||+|+.+.+++..+++.++++.++++ ++++| ++.|++++
T Consensus 81 ~v~d--~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~l 157 (169)
T 3q85_A 81 IVFS--VTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCK-HIETSAALHHNTREL 157 (169)
T ss_dssp EEEE--TTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECBTTTTBSHHHH
T ss_pred EEEE--CCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCc-EEEecCccCCCHHHH
Confidence 788 77755 2332 2222358999999999999988888889999999999985 89999 89999999
Q ss_pred HHHHHHHHcC
Q psy3301 543 FVKLATMAAF 552 (608)
Q Consensus 543 F~~l~~~a~~ 552 (608)
|..|++.+..
T Consensus 158 ~~~l~~~i~~ 167 (169)
T 3q85_A 158 FEGAVRQIRL 167 (169)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998754
No 141
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=99.72 E-value=1.3e-17 Score=152.60 Aligned_cols=147 Identities=17% Similarity=0.198 Sum_probs=128.3
Q ss_pred ccccChHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHH
Q psy3301 165 DKQELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLH 244 (608)
Q Consensus 165 ~~~~l~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~ 244 (608)
....+++.....++++|..+|.|++|.|+..|+..+++. +|.+++.+++..++..++.+ ++|.|+|++|+.++
T Consensus 13 ~~~~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~-~~~~~~~~~~~~l~~~~d~~------~~g~i~~~eF~~~~ 85 (161)
T 3fwb_A 13 LNSELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKA-LGFELPKREILDLIDEYDSE------GRHLMKYDDFYIVM 85 (161)
T ss_dssp TTTTSCHHHHHHHHHHHHHHCTTSSSEECHHHHHHHHHH-TTCCCCHHHHHHHHHHHCTT------SSSCEEHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH-cCCCCCHHHHHHHHHHhCcC------CCCeEeHHHHHHHH
Confidence 345688999999999999999999999999999999997 79999999999999999888 79999999999887
Q ss_pred HHHHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhcc
Q psy3301 245 NLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSL 324 (608)
Q Consensus 245 ~~~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~ 324 (608)
........ ..+.++.+|+.||+|++|+|+.+||+.++..
T Consensus 86 ~~~~~~~~-----------------------------------------~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~ 124 (161)
T 3fwb_A 86 GEKILKRD-----------------------------------------PLDEIKRAFQLFDDDHTGKISIKNLRRVAKE 124 (161)
T ss_dssp HHHHHTCC-----------------------------------------HHHHHHHHHHHHCTTCSSEECHHHHHHHHHH
T ss_pred HHHHhcCC-----------------------------------------cHHHHHHHHHHHcCCCCCeEeHHHHHHHHHH
Confidence 64433211 1467889999999999999999999999999
Q ss_pred CCCCCCCCCccccccceecCCCCccchhhHHhHhh
Q psy3301 325 CPPECPPWTDREMRAMVATNSKGWITMQGFLCYWI 359 (608)
Q Consensus 325 ~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~ 359 (608)
+|....+.+...+++.+|.|++|.|+|+||+..+.
T Consensus 125 ~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 159 (161)
T 3fwb_A 125 LGETLTDEELRAMIEEFDLDGDGEINENEFIAICT 159 (161)
T ss_dssp TTCCCCHHHHHHHHHTTCSSSSSSEEHHHHHHHHH
T ss_pred hCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHh
Confidence 98555556678899999999999999999998764
No 142
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.71 E-value=9.6e-18 Score=179.55 Aligned_cols=140 Identities=22% Similarity=0.196 Sum_probs=105.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCC--cCCCCCcceEecCccCCCceeEEEEeCCCC----------CCChHHH-H
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPE--LVPSKAEEITIPPDVTPEMVPTHIVDYSEV----------DQTVDEL-T 75 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~----------~~~~~~~-~ 75 (608)
..+||+++|++|||||||+++|++..+.. .++++ +...+...+...+..+.||||||+ +.|.... .
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gt-T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 252 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGT-TRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 252 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC----------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCc-eeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHH
Confidence 45899999999999999999999988642 23332 333333344445667999999997 4444333 3
Q ss_pred HHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC----------------------c
Q psy3301 76 EEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST----------------------V 133 (608)
Q Consensus 76 ~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------------------~ 133 (608)
.+++.||++++|+|++++.+++.. .|...+.. .++|+++|+||+|+.+... +
T Consensus 253 ~~~~~ad~~llv~D~~~~~s~~~~--~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 326 (436)
T 2hjg_A 253 KAIDRSEVVAVVLDGEEGIIEQDK--RIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 326 (436)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHhCCEEEEEEcCCcCCcHHHH--HHHHHHHH----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEE
Confidence 588999999999999999888876 47776663 4789999999999975422 7
Q ss_pred ccCcccCcCHHHHHHHHHHHHh
Q psy3301 134 ESSAKTLKNISEMFYYAQKAVL 155 (608)
Q Consensus 134 e~SAk~~~~i~~lf~~l~~~i~ 155 (608)
++||++|.||+++|..+.+.+.
T Consensus 327 ~~SA~tg~~v~~l~~~i~~~~~ 348 (436)
T 2hjg_A 327 FMSALTKKRIHTLMPAIIKASE 348 (436)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHH
T ss_pred EEecccCCCHHHHHHHHHHHHH
Confidence 8999999999999999887764
No 143
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Probab=99.71 E-value=1.3e-17 Score=152.66 Aligned_cols=152 Identities=21% Similarity=0.281 Sum_probs=127.0
Q ss_pred ccccccChHHHHHHHHHHHHhccCCC-CCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHH
Q psy3301 163 ISDKQELTPECIKALTRIFKVCDLDN-DNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFL 241 (608)
Q Consensus 163 ~~~~~~l~~~~~~~L~~~f~~~D~d~-dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~ 241 (608)
......+++.....++++|..+|.|+ +|.|+.+|+..+++. +|..++.++++.++..++.+ ++|.|+|++|+
T Consensus 6 ~~~~~~l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~D~~------~~g~i~~~eF~ 78 (161)
T 1dtl_A 6 KAAVEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRM-LGQNPTPEELQEMIDEVDED------GSGTVDFDEFL 78 (161)
T ss_dssp TTGGGGSCHHHHHHHHHHHHHHTTTCGGGSBCHHHHHHHHHH-TTCCCCHHHHHHHHHHHCTT------SSSSBCHHHHH
T ss_pred HHHHhhCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH-cCCCCCHHHHHHHHHHhCCC------CCCeEcHHHHH
Confidence 34455688889999999999999999 999999999999987 79999999999999999988 89999999999
Q ss_pred HHHHHHHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHh
Q psy3301 242 FLHNLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARL 321 (608)
Q Consensus 242 ~l~~~~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~ 321 (608)
.++........ .....+.++.+|+.||+|++|+|+.+||+.+
T Consensus 79 ~~~~~~~~~~~--------------------------------------~~~~~~~~~~~F~~~D~d~~G~i~~~El~~~ 120 (161)
T 1dtl_A 79 VMMVRSMKDDS--------------------------------------KGKSEEELSDLFRMFDKNADGYIDLEELKIM 120 (161)
T ss_dssp HHHHHHHC-------------------------------------------CHHHHHHHHHHHHCTTCSSEEEHHHHGGG
T ss_pred HHHHHHhcccc--------------------------------------cchHHHHHHHHHHHhCCCCCCcCcHHHHHHH
Confidence 88765432100 1122567899999999999999999999999
Q ss_pred hccCCCCCCCCCccccccceecCCCCccchhhHHhHhh
Q psy3301 322 FSLCPPECPPWTDREMRAMVATNSKGWITMQGFLCYWI 359 (608)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~ 359 (608)
+...|....+.+...++..+|.|++|.|+|+||+..+.
T Consensus 121 l~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~ 158 (161)
T 1dtl_A 121 LQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMK 158 (161)
T ss_dssp GTTC--CCCHHHHHHHHHHHCTTSSSEEEHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHH
Confidence 99987444555578889999999999999999998874
No 144
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.71 E-value=3.1e-18 Score=165.42 Aligned_cols=146 Identities=12% Similarity=0.048 Sum_probs=113.3
Q ss_pred CCceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCC-------ceEecceEeCCcceeEeeeeccccc----
Q psy3301 406 TRNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDP-------PYTINTTTVYGQEKYLVLKEILVRD---- 474 (608)
Q Consensus 406 ~r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~-------~~~i~~~~v~Gqe~~~~l~~~~~~~---- 474 (608)
....+||+|+|++|||||||+++|+++.|...+.+|++. .+.. .+.+.-.+++|+++|..++..++++
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 102 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFE-NYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAV 102 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEE-EEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeee-eEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEE
Confidence 345699999999999999999999999999888777765 2222 2233344559999999998888877
Q ss_pred --ccccCCCCcc--cc-ccccc-----CCCCCcEEEEEeCCCCCcc------------hhcccccHHHHHHHcCCCCceE
Q psy3301 475 --EQLPVLLPVD--VD-CDKYF-----STSKIPVMLVAGKSDMPRA------------RQDYLMQPDIFCETHKLSPAHS 532 (608)
Q Consensus 475 --v~d~~l~~~~--~~-~~~~~-----~~~~~p~ilVgnK~DL~~~------------~~~~~~~~~~~~~~~~~~~~~~ 532 (608)
||| +++.+ .. ...|. ..+++|++|||||+||.+. +++..+++.++++++++.++++
T Consensus 103 i~v~d--~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 180 (214)
T 3q3j_B 103 LLCFD--ISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLE 180 (214)
T ss_dssp EEEEE--TTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEE--CcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEE
Confidence 788 77765 33 23221 1468999999999999763 6788889999999999955999
Q ss_pred Ec--cCCC-HHHHHHHHHHHHcCCC
Q psy3301 533 FS--AANN-DREVFVKLATMAAFPR 554 (608)
Q Consensus 533 ~S--~~~~-v~e~F~~l~~~a~~p~ 554 (608)
+| ++.| ++++|..|++.+..+.
T Consensus 181 ~SA~~g~g~v~~lf~~l~~~~~~~~ 205 (214)
T 3q3j_B 181 GSAFTSEKSIHSIFRTASMLCLNKP 205 (214)
T ss_dssp CCTTTCHHHHHHHHHHHHHHHHC--
T ss_pred eccCCCcccHHHHHHHHHHHHhccC
Confidence 99 7888 9999999999998775
No 145
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.71 E-value=6.9e-18 Score=160.46 Aligned_cols=146 Identities=17% Similarity=0.213 Sum_probs=105.8
Q ss_pred CCceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecce-------EeCCcceeEe-eeeccccc---
Q psy3301 406 TRNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINTT-------TVYGQEKYLV-LKEILVRD--- 474 (608)
Q Consensus 406 ~r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~~-------~v~Gqe~~~~-l~~~~~~~--- 474 (608)
....+||+|+|++|||||||+++|++..+...+.++.+.+.+...+.+++. +++|++++.. ++..+++.
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~ 99 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDA 99 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCE
Confidence 356799999999999999999999865544333334433222333334432 3488887653 66655554
Q ss_pred ---ccccCCCCcc--cccccc-------cCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHH
Q psy3301 475 ---EQLPVLLPVD--VDCDKY-------FSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDR 540 (608)
Q Consensus 475 ---v~d~~l~~~~--~~~~~~-------~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~ 540 (608)
||| +++.+ ..+..| ....++|+++||||+||.+.+++..+++.++++.++++ ++++| ++.|++
T Consensus 100 ~ilv~d--~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~-~~e~Sa~~~~~v~ 176 (195)
T 3cbq_A 100 FLIVFS--VTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCK-HIETSAALHHNTR 176 (195)
T ss_dssp EEEEEE--TTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCE-EEEEBTTTTBSHH
T ss_pred EEEEEE--CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCE-EEEEcCCCCCCHH
Confidence 788 77765 333322 22358999999999999887888888999999999985 89999 899999
Q ss_pred HHHHHHHHHHcCCC
Q psy3301 541 EVFVKLATMAAFPR 554 (608)
Q Consensus 541 e~F~~l~~~a~~p~ 554 (608)
++|..|++.+...+
T Consensus 177 ~lf~~l~~~i~~~~ 190 (195)
T 3cbq_A 177 ELFEGAVRQIRLRR 190 (195)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999887655
No 146
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=99.71 E-value=7.9e-18 Score=150.81 Aligned_cols=140 Identities=15% Similarity=0.268 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHHHhc
Q psy3301 171 PECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQR 250 (608)
Q Consensus 171 ~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~~~~ 250 (608)
++....++++|..+|.|++|.|+..|+..+++. +|.+++..+++.++..++.+ ++|.|+|++|+.++......
T Consensus 2 ~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~-~~~~~~~~~~~~l~~~~d~~------~~g~i~~~eF~~~~~~~~~~ 74 (142)
T 2bl0_C 2 DDQVSEFKEAFELFDSERTGFITKEGLQTVLKQ-FGVRVEPAAFNEMFNEADAT------GNGKIQFPEFLSMMGRRMKQ 74 (142)
T ss_dssp CHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHH-HTCCCCHHHHHHHHHHHCTT------CSSEEEHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH-hCCCCCHHHHHHHHHHhCcC------CCCeeeHHHHHHHHHHHhcC
Confidence 456788999999999999999999999999987 79999999999999999988 79999999999887653321
Q ss_pred CCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCCCCCC
Q psy3301 251 GRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPECP 330 (608)
Q Consensus 251 ~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~~~~~ 330 (608)
.. ..+.++.+|+.||+|++|+|+.+||+.++..+|....
T Consensus 75 ~~-----------------------------------------~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~ 113 (142)
T 2bl0_C 75 TT-----------------------------------------SEDILRQAFRTFDPEGTGYIPKAALQDALLNLGDRLK 113 (142)
T ss_dssp CC-----------------------------------------CHHHHHHHHHHTCCSSCSCEEHHHHHHHHHHSSSCCC
T ss_pred CC-----------------------------------------hHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCC
Confidence 11 1456889999999999999999999999999875455
Q ss_pred CCCccccccceecCCCCccchhhHHhHhh
Q psy3301 331 PWTDREMRAMVATNSKGWITMQGFLCYWI 359 (608)
Q Consensus 331 ~~~~~~~~~~~d~~~~g~i~~~ef~~~w~ 359 (608)
+.+...++..+| |++|.|+|+||+..+.
T Consensus 114 ~~~~~~~~~~~d-~~dg~i~~~eF~~~~~ 141 (142)
T 2bl0_C 114 PHEFAEFLGITE-TEKGQIRYDNFINTMF 141 (142)
T ss_dssp HHHHHHHHHHHC-CSSSEECSHHHHTTTC
T ss_pred HHHHHHHHHHhC-CCCCcEeHHHHHHHHc
Confidence 556788999999 9999999999998763
No 147
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.71 E-value=7.3e-18 Score=161.06 Aligned_cols=150 Identities=19% Similarity=0.232 Sum_probs=107.7
Q ss_pred ccCCCceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEec-------ceEeCCcceeEeeeeccccc-
Q psy3301 403 KQTTRNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTIN-------TTTVYGQEKYLVLKEILVRD- 474 (608)
Q Consensus 403 ~~~~r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~-------~~~v~Gqe~~~~l~~~~~~~- 474 (608)
.......+||+|+|++|||||||+++|+++.+...+.+|++.+.....+.++ -++++|+++|..++..+++.
T Consensus 23 ~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 102 (201)
T 2hup_A 23 DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSA 102 (201)
T ss_dssp ---CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTC
T ss_pred ccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhC
Confidence 3344667999999999999999999999999987777676652222333333 33449999998888777776
Q ss_pred -----ccccCCCCcc--cccccc------cCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCH
Q psy3301 475 -----EQLPVLLPVD--VDCDKY------FSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANND 539 (608)
Q Consensus 475 -----v~d~~l~~~~--~~~~~~------~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v 539 (608)
||| +++.+ +.+..| ....++|++|||||+||.+.+++..+++.++++.+++.+++++| ++.|+
T Consensus 103 d~iilv~D--~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi 180 (201)
T 2hup_A 103 NGAILAYD--ITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNV 180 (201)
T ss_dssp SEEEEEEE--TTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSH
T ss_pred CEEEEEEE--CCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCH
Confidence 788 77655 222211 22478999999999999887788888899999999985589999 89999
Q ss_pred HHHHHHHHHHHcCCC
Q psy3301 540 REVFVKLATMAAFPR 554 (608)
Q Consensus 540 ~e~F~~l~~~a~~p~ 554 (608)
+++|..|++.+...+
T Consensus 181 ~~l~~~l~~~i~~~~ 195 (201)
T 2hup_A 181 EEAFLRVATELIMRH 195 (201)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999886543
No 148
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=99.71 E-value=2.8e-17 Score=151.87 Aligned_cols=148 Identities=19% Similarity=0.233 Sum_probs=127.1
Q ss_pred ccccChHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHH
Q psy3301 165 DKQELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLH 244 (608)
Q Consensus 165 ~~~~l~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~ 244 (608)
....++++....++++|..+|.|++|.|+..|+..+++. +|..++.+++..++..++.+ ++|.|+|++|+.++
T Consensus 18 ~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~-~~~~~~~~~~~~~~~~~d~~------~~g~i~~~eF~~~~ 90 (169)
T 3qrx_A 18 GRVGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRA-LGFEPKKEEIKKMISEIDKD------GSGTIDFEEFLTMM 90 (169)
T ss_dssp --CCCCHHHHHHHHHHHHHHCTTCCSEECHHHHHHHHHH-TSCCCCHHHHHHHHHHHCSS------SSSSEEHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH-cCCCCCHHHHHHHHHHhcCC------CCCcCCHHHHHHHH
Confidence 345678899999999999999999999999999999987 79999999999999999888 79999999999876
Q ss_pred HHHHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhcc
Q psy3301 245 NLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSL 324 (608)
Q Consensus 245 ~~~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~ 324 (608)
...... ....+.+..+|+.||+|++|+|+.+||+.++..
T Consensus 91 ~~~~~~-----------------------------------------~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~ 129 (169)
T 3qrx_A 91 TAKMGE-----------------------------------------RDSREEILKAFRLFDDDNSGTITIKDLRRVAKE 129 (169)
T ss_dssp HHHHHH-----------------------------------------HHHHHHHHHHHHHHCTTCSSSBCHHHHHHHHHH
T ss_pred HHHhcc-----------------------------------------cCcHHHHHHHHHHhCCCCCCcCCHHHHHHHHHH
Confidence 543221 112467888999999999999999999999999
Q ss_pred CCCCCCCCCccccccceecCCCCccchhhHHhHhhh
Q psy3301 325 CPPECPPWTDREMRAMVATNSKGWITMQGFLCYWIL 360 (608)
Q Consensus 325 ~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~ 360 (608)
+|....+.+...++..+|.|++|.|+|+||+..+.-
T Consensus 130 ~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~ 165 (169)
T 3qrx_A 130 LGENLTEEELQEMIAEADRNDDNEIDEDEFIRIMKK 165 (169)
T ss_dssp TTCCCCHHHHHHHHHHHCCSSSSCBCHHHHHHHHC-
T ss_pred cCCCCCHHHHHHHHHHhCCCCCCCEeHHHHHHHHHh
Confidence 975555566788999999999999999999998764
No 149
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=99.71 E-value=1.3e-17 Score=150.90 Aligned_cols=149 Identities=21% Similarity=0.275 Sum_probs=125.7
Q ss_pred ccChHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHH
Q psy3301 167 QELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNL 246 (608)
Q Consensus 167 ~~l~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~ 246 (608)
..++++..+.++++|..+|.|++|.|+..|+..+++. +|..++..++..++..++.+ ++|.|+|++|+.++..
T Consensus 3 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~-~~~~~~~~~~~~l~~~~d~~------~~g~i~~~eF~~~~~~ 75 (153)
T 3ox6_A 3 RSLRPEEIEELREAFREFDKDKDGYINCRDLGNCMRT-MGYMPTEMELIELSQQINMN------LGGHVDFDDFVELMGP 75 (153)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHH-TTCCCCHHHHHHHHHHHHTT------STTCCCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH-cCCCCCHHHHHHHHHHhCCC------CCccCcHHHHHHHHHH
Confidence 4578889999999999999999999999999999987 79999999999999999988 7999999999987754
Q ss_pred HHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhcc-C
Q psy3301 247 FMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSL-C 325 (608)
Q Consensus 247 ~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~-~ 325 (608)
....... .....+.++.+|+.||+|++|+|+.+||+.++.. .
T Consensus 76 ~~~~~~~-------------------------------------~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~ 118 (153)
T 3ox6_A 76 KLLAETA-------------------------------------DMIGVKELRDAFREFDTNGDGEISTSELREAMRALL 118 (153)
T ss_dssp HHTTCCH-------------------------------------HHHCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHH
T ss_pred Hhhcccc-------------------------------------ccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHh
Confidence 3322110 1111467889999999999999999999999998 6
Q ss_pred CCCCCCCCccccccceecCCCCccchhhHHhHhh
Q psy3301 326 PPECPPWTDREMRAMVATNSKGWITMQGFLCYWI 359 (608)
Q Consensus 326 ~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~ 359 (608)
|....+.+...++..+|.|++|.|+|+||+..+.
T Consensus 119 ~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~~ 152 (153)
T 3ox6_A 119 GHQVGHRDIEEIIRDVDLNGDGRVDFEEFVRMMS 152 (153)
T ss_dssp SSCCCHHHHHHHHHHHCSSSSSSBCHHHHHHHTC
T ss_pred cCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHh
Confidence 6444445578899999999999999999998763
No 150
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.71 E-value=1.3e-17 Score=156.05 Aligned_cols=143 Identities=17% Similarity=0.202 Sum_probs=111.8
Q ss_pred ceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEe-------cceEeCCcceeEeeeeccccc------
Q psy3301 408 NVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTI-------NTTTVYGQEKYLVLKEILVRD------ 474 (608)
Q Consensus 408 ~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i-------~~~~v~Gqe~~~~l~~~~~~~------ 474 (608)
..+||+|+|++|||||||+++|+++.+...+.++.+. .+...+.+ .-++.+|+++|..++..+++.
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~ 83 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIEN-TFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL 83 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccc-cEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEE
Confidence 4689999999999999999999999998888777665 22222233 334559999998888888766
Q ss_pred ccccCCCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHH
Q psy3301 475 EQLPVLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVF 543 (608)
Q Consensus 475 v~d~~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F 543 (608)
+|| +++.+ +.+. +.....++|+++||||+||.+.+++..+++.++++.++++ ++++| ++.|++++|
T Consensus 84 v~d--~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~l~ 160 (181)
T 3t5g_A 84 VYS--VTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAA-FLESSAKENQTAVDVF 160 (181)
T ss_dssp EEE--TTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCE-EEECCTTSHHHHHHHH
T ss_pred EEE--CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCc-EEEEecCCCCCHHHHH
Confidence 788 77654 2222 3334568999999999999988888889999999999996 88899 899999999
Q ss_pred HHHHHHHcCCC
Q psy3301 544 VKLATMAAFPR 554 (608)
Q Consensus 544 ~~l~~~a~~p~ 554 (608)
..|++.+...+
T Consensus 161 ~~l~~~~~~~~ 171 (181)
T 3t5g_A 161 RRIILEAEKMD 171 (181)
T ss_dssp HHHHHHHHTC-
T ss_pred HHHHHHHHHhc
Confidence 99999987765
No 151
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=1.2e-17 Score=160.72 Aligned_cols=143 Identities=17% Similarity=0.216 Sum_probs=102.7
Q ss_pred CCceEEEEEEccCCCchHHHHHHHhcCC--CCCCCCCCCCCCcCCCceEecce-------EeCCcce-eEeeeeccccc-
Q psy3301 406 TRNVYVCHVIGNRSTGKTALCQSILRKH--HDSSKTSITSPVECDPPYTINTT-------TVYGQEK-YLVLKEILVRD- 474 (608)
Q Consensus 406 ~r~~~k~~viG~~gvGKTsll~~f~~~~--~~~~~~~t~~~~~~~~~~~i~~~-------~v~Gqe~-~~~l~~~~~~~- 474 (608)
....+||+|||++|||||||+++|++.. |...+. +++.+.+...+.+++. +++|++. +..+.+.+++.
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~-~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a 112 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCE-VLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG 112 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCC-ccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence 3456999999999999999999999743 444443 3444333334444443 2367665 45566666664
Q ss_pred -----ccccCCCCcc--cccccc-------cCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCC
Q psy3301 475 -----EQLPVLLPVD--VDCDKY-------FSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANN 538 (608)
Q Consensus 475 -----v~d~~l~~~~--~~~~~~-------~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~ 538 (608)
||| +++.+ +.+..| ....++|++|||||+||.+.+++..+++..+++.++++ ++++| ++.|
T Consensus 113 ~~~ilVyd--vt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~-~~e~SAk~g~~ 189 (211)
T 2g3y_A 113 DAYLIVYS--ITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCK-FIETSAAVQHN 189 (211)
T ss_dssp SEEEEEEE--TTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEECBTTTTBS
T ss_pred CEEEEEEE--CCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCE-EEEEeCCCCCC
Confidence 888 88765 333211 12357999999999999887888778889999999985 88999 8999
Q ss_pred HHHHHHHHHHHHcC
Q psy3301 539 DREVFVKLATMAAF 552 (608)
Q Consensus 539 v~e~F~~l~~~a~~ 552 (608)
|+++|..|++.+..
T Consensus 190 v~elf~~l~~~i~~ 203 (211)
T 2g3y_A 190 VKELFEGIVRQVRL 203 (211)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998743
No 152
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=1.5e-17 Score=158.85 Aligned_cols=144 Identities=17% Similarity=0.190 Sum_probs=112.9
Q ss_pred CCceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEe-------cceEeCCcceeEeeeeccccc----
Q psy3301 406 TRNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTI-------NTTTVYGQEKYLVLKEILVRD---- 474 (608)
Q Consensus 406 ~r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i-------~~~~v~Gqe~~~~l~~~~~~~---- 474 (608)
....+||+|+|++|||||||+++|+++.+...+.+|++.+.+...+.+ .-++++|+++|..++..+++.
T Consensus 23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 102 (201)
T 2ew1_A 23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL 102 (201)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEE
Confidence 356799999999999999999999999998877777665222223333 334559999998888877776
Q ss_pred --ccccCCCCcc--ccccc------ccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHH
Q psy3301 475 --EQLPVLLPVD--VDCDK------YFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREV 542 (608)
Q Consensus 475 --v~d~~l~~~~--~~~~~------~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~ 542 (608)
||| +++.+ ..+.. .....++|+++||||+|+.+.+++..+++.++++..+++ ++++| ++.|++++
T Consensus 103 i~v~D--~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~g~gv~~l 179 (201)
T 2ew1_A 103 ILTYD--ITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMY-YLETSAKESDNVEKL 179 (201)
T ss_dssp EEEEE--TTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCC-EEECCTTTCTTHHHH
T ss_pred EEEEE--CCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCE-EEEEeCCCCCCHHHH
Confidence 788 77655 22221 223468999999999999887788788899999999986 88999 89999999
Q ss_pred HHHHHHHHcC
Q psy3301 543 FVKLATMAAF 552 (608)
Q Consensus 543 F~~l~~~a~~ 552 (608)
|..|++.+..
T Consensus 180 ~~~l~~~i~~ 189 (201)
T 2ew1_A 180 FLDLACRLIS 189 (201)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988754
No 153
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=3.2e-17 Score=155.37 Aligned_cols=144 Identities=15% Similarity=0.163 Sum_probs=112.0
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceE-------ecceEeCCcceeEeeeeccccc-----
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYT-------INTTTVYGQEKYLVLKEILVRD----- 474 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~-------i~~~~v~Gqe~~~~l~~~~~~~----- 474 (608)
...+||+|+|++|||||||+++|+++.+...+.+|.+. .+...+. +.-++++|+++|..++..+++.
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 94 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFD-HYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL 94 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCC-CEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccc-eeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEE
Confidence 35699999999999999999999999998888777655 2222233 3334459999998888887776
Q ss_pred -ccccCCCCcc--cccc-ccc-----CCCCCcEEEEEeCCCCCcc------------hhcccccHHHHHHHcCCCCceEE
Q psy3301 475 -EQLPVLLPVD--VDCD-KYF-----STSKIPVMLVAGKSDMPRA------------RQDYLMQPDIFCETHKLSPAHSF 533 (608)
Q Consensus 475 -v~d~~l~~~~--~~~~-~~~-----~~~~~p~ilVgnK~DL~~~------------~~~~~~~~~~~~~~~~~~~~~~~ 533 (608)
||| +++.+ ..+. .|. ..+++|+++||||+||.+. +++..+++.++++++++.+++++
T Consensus 95 ~v~d--~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 172 (194)
T 2atx_A 95 ICFS--VVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVEC 172 (194)
T ss_dssp EEEE--TTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEEC
T ss_pred EEEE--CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEe
Confidence 788 77665 2222 121 1358999999999999753 45667889999999998559999
Q ss_pred c--cCCCHHHHHHHHHHHHcCC
Q psy3301 534 S--AANNDREVFVKLATMAAFP 553 (608)
Q Consensus 534 S--~~~~v~e~F~~l~~~a~~p 553 (608)
| ++.|++++|..|++.++.|
T Consensus 173 Sa~~g~gi~~l~~~l~~~i~~p 194 (194)
T 2atx_A 173 SALTQKGLKTVFDEAIIAILTP 194 (194)
T ss_dssp CTTTCTTHHHHHHHHHHHHHCC
T ss_pred eCCCCCCHHHHHHHHHHHHhcC
Confidence 9 8999999999999999876
No 154
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.69 E-value=2.8e-17 Score=151.31 Aligned_cols=138 Identities=16% Similarity=0.167 Sum_probs=87.0
Q ss_pred eEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEec-------ceEeCCcceeEeeeeccccc------c
Q psy3301 409 VYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTIN-------TTTVYGQEKYLVLKEILVRD------E 475 (608)
Q Consensus 409 ~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~-------~~~v~Gqe~~~~l~~~~~~~------v 475 (608)
.+||+|+|++|||||||+++|++..+.... ++++. .+...+.++ -.+++|+++|..++..+++. +
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEA-EAAGH-TYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------C-EEEEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCC-Ccccc-ceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 589999999999999999999987765433 34433 112222233 33448999999888887776 7
Q ss_pred cccCCCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHH
Q psy3301 476 QLPVLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFV 544 (608)
Q Consensus 476 ~d~~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~ 544 (608)
|| +++.+ +.+. +....+++|+++||||+||.+.+++..+++.++++.++++ ++++| ++.|++++|.
T Consensus 80 ~d--~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l~~ 156 (166)
T 3q72_A 80 YS--VTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCK-FIETSAALHHNVQALFE 156 (166)
T ss_dssp EE--TTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCE-EEECBGGGTBSHHHHHH
T ss_pred EE--CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCc-EEEeccCCCCCHHHHHH
Confidence 88 77665 2222 2233578999999999999988888888999999999985 88899 8999999999
Q ss_pred HHHHHHc
Q psy3301 545 KLATMAA 551 (608)
Q Consensus 545 ~l~~~a~ 551 (608)
.|++.+.
T Consensus 157 ~l~~~~~ 163 (166)
T 3q72_A 157 GVVRQIR 163 (166)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998764
No 155
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.69 E-value=3e-17 Score=168.90 Aligned_cols=150 Identities=19% Similarity=0.176 Sum_probs=108.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCC-cCCCCCcceEecCccCCC-ceeEEEEeCCCCC----CChHH---HHHHHHhc
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPE-LVPSKAEEITIPPDVTPE-MVPTHIVDYSEVD----QTVDE---LTEEIQKA 81 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~-~~~~~~~~~~i~~~~~~~-~~~~~i~Dt~G~~----~~~~~---~~~~~~~a 81 (608)
.+|+|+|.+|||||||+++|++..... +++.++....+. .+... ...+.||||||+. .+... ....+..+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g-~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLG-MVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEE-EEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEE-EEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 368999999999999999999876432 233222111111 12222 3679999999953 23223 33445669
Q ss_pred CcEEEEEEcCC---hhhHHHHHHhHHHHHhhhc-cCCCCcEEEEEeCcCCCCCCC---------------cccCcccCcC
Q psy3301 82 HVICLVYSVVD---DASIDRLSSHWLPFLRNCL-VDTCLPIVLVGNKVDLVDYST---------------VESSAKTLKN 142 (608)
Q Consensus 82 d~iilV~d~~~---~~s~~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~~~~---------------~e~SAk~~~~ 142 (608)
|++|+|+|+++ +++++.+. .|...+.... ...++|+++|+||+|+..... +++||+++.|
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~-~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~~~~v~~iSA~tg~g 316 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYL-TINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREG 316 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHH-HHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCSCCCBCCCSSCCSST
T ss_pred cEEEEEEECCcccccChHHHHH-HHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhcCCCEEEEECCCCcC
Confidence 99999999998 78888887 7888887531 135899999999999975311 8899999999
Q ss_pred HHHHHHHHHHHHhCCCC-Ccc
Q psy3301 143 ISEMFYYAQKAVLHPMA-PIY 162 (608)
Q Consensus 143 i~~lf~~l~~~i~~~~~-~l~ 162 (608)
++++++++.+.+..... +.+
T Consensus 317 i~eL~~~l~~~l~~~~~~~~y 337 (342)
T 1lnz_A 317 LRELLFEVANQLENTPEFPLY 337 (342)
T ss_dssp THHHHHHHHHHHTSCCCCCSS
T ss_pred HHHHHHHHHHHHhhCccccCC
Confidence 99999999999865443 444
No 156
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=99.69 E-value=2.5e-17 Score=148.14 Aligned_cols=144 Identities=26% Similarity=0.336 Sum_probs=124.0
Q ss_pred ccChHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHH
Q psy3301 167 QELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNL 246 (608)
Q Consensus 167 ~~l~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~ 246 (608)
..+++.....++++|..+|.|++|.|+..|+..+++. +|.+++..++..++..++.+ ++|.|+|++|+.++..
T Consensus 3 ~~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~-~~~~~~~~~~~~l~~~~d~~------~~g~i~~~ef~~~~~~ 75 (147)
T 4ds7_A 3 QNLTEEQIAEFKEAFALFDKDNSGSISASELATVMRS-LGLSPSEAEVADLMNEIDVD------GNHAIEFSEFLALMSR 75 (147)
T ss_dssp -CCCHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHH-TTCCCCHHHHHHHHHHHCTT------SSSEEEHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHH-hCCCCCHHHHHHHHHHhccC------CCCcCcHHHHHHHHHH
Confidence 3578889999999999999999999999999999987 79999999999999999888 7999999999987654
Q ss_pred HHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCC
Q psy3301 247 FMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCP 326 (608)
Q Consensus 247 ~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~ 326 (608)
.... ....+.++.+|+.||+|++|.|+.+|++.++..+|
T Consensus 76 ~~~~-----------------------------------------~~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~~ 114 (147)
T 4ds7_A 76 QLKC-----------------------------------------NDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIG 114 (147)
T ss_dssp HHHT-----------------------------------------HHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTT
T ss_pred hccC-----------------------------------------CCcHHHHHHHHHHhCCCCCCeECHHHHHHHHHHcC
Confidence 3221 12246788999999999999999999999999997
Q ss_pred CCCCCCCccccccceecCCCCccchhhHHhHhh
Q psy3301 327 PECPPWTDREMRAMVATNSKGWITMQGFLCYWI 359 (608)
Q Consensus 327 ~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~ 359 (608)
....+.+...++..+| |++|.|+|+||+..+.
T Consensus 115 ~~~~~~~~~~~~~~~d-~~dg~i~~~eF~~~l~ 146 (147)
T 4ds7_A 115 EKLTDAEVDEMLREVS-DGSGEINIKQFAALLS 146 (147)
T ss_dssp CCCCHHHHHHHHHHHS-SSCSSEEHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhc-CCCCcCcHHHHHHHHh
Confidence 5455555778899999 9999999999998763
No 157
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.69 E-value=4.3e-17 Score=154.17 Aligned_cols=143 Identities=20% Similarity=0.194 Sum_probs=108.1
Q ss_pred CCceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEec-------ceEeCCcceeEeeeeccccc----
Q psy3301 406 TRNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTIN-------TTTVYGQEKYLVLKEILVRD---- 474 (608)
Q Consensus 406 ~r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~-------~~~v~Gqe~~~~l~~~~~~~---- 474 (608)
....+||+|+|++|||||||+++|+++.+...+.++.+.+.....+.++ -++++|+++|..++..+++.
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 97 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA 97 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEE
Confidence 4567999999999999999999999999988777666652222233333 23449999998888877776
Q ss_pred --ccccCCCCcc--ccccc------ccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHH
Q psy3301 475 --EQLPVLLPVD--VDCDK------YFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREV 542 (608)
Q Consensus 475 --v~d~~l~~~~--~~~~~------~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~ 542 (608)
||| +++.+ ..+.. .....++|+++|+||+||.+.+++..+++.+++++++++ ++++| ++.|++++
T Consensus 98 i~v~d--~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l 174 (191)
T 2a5j_A 98 LLVYD--ITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLI-FMETSAKTACNVEEA 174 (191)
T ss_dssp EEEEE--TTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEEECTTTCTTHHHH
T ss_pred EEEEE--CCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCE-EEEEeCCCCCCHHHH
Confidence 788 77654 22221 122468999999999999887778788899999999985 88999 89999999
Q ss_pred HHHHHHHHc
Q psy3301 543 FVKLATMAA 551 (608)
Q Consensus 543 F~~l~~~a~ 551 (608)
|..|++.+.
T Consensus 175 ~~~l~~~i~ 183 (191)
T 2a5j_A 175 FINTAKEIY 183 (191)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998874
No 158
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.69 E-value=2.5e-17 Score=156.09 Aligned_cols=147 Identities=17% Similarity=0.120 Sum_probs=114.6
Q ss_pred CCCceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCce-------EecceEeCCcceeEeeeeccccc---
Q psy3301 405 TTRNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPY-------TINTTTVYGQEKYLVLKEILVRD--- 474 (608)
Q Consensus 405 ~~r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~-------~i~~~~v~Gqe~~~~l~~~~~~~--- 474 (608)
.....+||+|+|++|||||||+++|+++.+...+.+|.+. .+...+ .+.-++++|+++|..++..++++
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 97 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFE-NFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDV 97 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEE-EEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeee-eeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcE
Confidence 3456799999999999999999999999998887777655 222222 23344559999999888888876
Q ss_pred ---ccccCCCCcc--ccc-cccc-----CCCCCcEEEEEeCCCCCc--chhcccccHHHHHHHcCCCCceEEc--cCCCH
Q psy3301 475 ---EQLPVLLPVD--VDC-DKYF-----STSKIPVMLVAGKSDMPR--ARQDYLMQPDIFCETHKLSPAHSFS--AANND 539 (608)
Q Consensus 475 ---v~d~~l~~~~--~~~-~~~~-----~~~~~p~ilVgnK~DL~~--~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v 539 (608)
||| +++.+ ..+ ..|. ..+++|+++||||+||.+ .+++..+++.++++.+++.+++++| ++.|+
T Consensus 98 ~i~v~d--~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 175 (194)
T 3reg_A 98 VLLCFA--VNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGL 175 (194)
T ss_dssp EEEEEE--TTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSH
T ss_pred EEEEEE--CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCH
Confidence 788 77755 232 2111 146899999999999975 3667788999999999998789999 89999
Q ss_pred HHHHHHHHHHHcCCC
Q psy3301 540 REVFVKLATMAAFPR 554 (608)
Q Consensus 540 ~e~F~~l~~~a~~p~ 554 (608)
+++|..|++.+....
T Consensus 176 ~~l~~~l~~~i~~~~ 190 (194)
T 3reg_A 176 NEVFEKSVDCIFSNK 190 (194)
T ss_dssp HHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999987664
No 159
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.69 E-value=2.5e-17 Score=152.16 Aligned_cols=142 Identities=16% Similarity=0.222 Sum_probs=103.9
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceE-------ecceEeCCcceeEeeeeccccc-----
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYT-------INTTTVYGQEKYLVLKEILVRD----- 474 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~-------i~~~~v~Gqe~~~~l~~~~~~~----- 474 (608)
...+||+|+|++|||||||+++++++.+...+.++.+.+.....+. +.-++++|+++|..++..+++.
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 4569999999999999999999999998877766666522112222 2333559999999888887776
Q ss_pred -ccccCCCCcc--cccccc------cCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHH
Q psy3301 475 -EQLPVLLPVD--VDCDKY------FSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVF 543 (608)
Q Consensus 475 -v~d~~l~~~~--~~~~~~------~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F 543 (608)
+|| +++.+ ..+..| ....++|+++|+||+|+.+.+++..+++.+++++++++ ++++| ++.|++++|
T Consensus 84 ~v~d--~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l~ 160 (170)
T 1z08_A 84 LVYD--ITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAK-HYHTSAKQNKGIEELF 160 (170)
T ss_dssp EEEE--TTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEEEBTTTTBSHHHHH
T ss_pred EEEE--CcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCe-EEEecCCCCCCHHHHH
Confidence 788 76654 222211 12367999999999999887778788999999999976 88999 899999999
Q ss_pred HHHHHHHc
Q psy3301 544 VKLATMAA 551 (608)
Q Consensus 544 ~~l~~~a~ 551 (608)
..|++.+.
T Consensus 161 ~~l~~~~~ 168 (170)
T 1z08_A 161 LDLCKRMI 168 (170)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998774
No 160
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Probab=99.68 E-value=2.4e-17 Score=150.50 Aligned_cols=149 Identities=14% Similarity=0.227 Sum_probs=124.3
Q ss_pred ccChHHHHHHHHHHHHhcc-CCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHH
Q psy3301 167 QELTPECIKALTRIFKVCD-LDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHN 245 (608)
Q Consensus 167 ~~l~~~~~~~L~~~f~~~D-~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~ 245 (608)
..++++.+..++++|..+| .|++|.|+.+|+..+++. +|..++..++..++..++.+ ++|.|+|++|+.++.
T Consensus 5 ~~l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~-~~~~~~~~~~~~l~~~~D~~------~~g~i~~~eF~~~~~ 77 (158)
T 2jnf_A 5 SKLSSNQVKLLETAFRDFETPEGSGRVSTDQIGIILEV-LGIQQTKSTIRQLIDEFDPF------GNGDIDFDSFKIIGA 77 (158)
T ss_dssp TTSCHHHHHHHHHHHHHSBCSSSCSSEEHHHHHHHHHH-TTCSCSHHHHHHHHHHHCTT------CCSEECHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHhCCCCCCCcCcHHHHHHHHHH-hCCCCCHHHHHHHHHHhCCC------CCCcCcHHHHHHHHH
Confidence 4577888999999999999 999999999999999987 79999999999999999888 799999999998775
Q ss_pred HHHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccC
Q psy3301 246 LFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLC 325 (608)
Q Consensus 246 ~~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~ 325 (608)
........ ++ .....++.+|+.||+|++|+|+.+||+.++...
T Consensus 78 ~~~~~~~~------------------------------~~-------~~~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~ 120 (158)
T 2jnf_A 78 RFLGEEVN------------------------------PE-------QMQQELREAFRLYDKEGNGYISTDVMREILAEL 120 (158)
T ss_dssp HHCCCCCC------------------------------TT-------TTSSTHHHHHHHHCSSSSSSEEHHHHHHHHHHH
T ss_pred HHhccccc------------------------------hh-------hHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHh
Confidence 43221100 00 012357888999999999999999999999988
Q ss_pred CCCCCCCCccccccceecCCCCccchhhHHhHhh
Q psy3301 326 PPECPPWTDREMRAMVATNSKGWITMQGFLCYWI 359 (608)
Q Consensus 326 ~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~ 359 (608)
|....+.+...++..+|.|++|.|+|+||+..+.
T Consensus 121 g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~ 154 (158)
T 2jnf_A 121 DETLSSEDLDAMIDEIDADGSGTVDFEEFMGVMT 154 (158)
T ss_dssp CTTCCHHHHHHHHHHHCSSCCSEECSHHHHHHTS
T ss_pred CCcCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHh
Confidence 7444455578889999999999999999998764
No 161
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=99.68 E-value=8.1e-17 Score=145.13 Aligned_cols=143 Identities=15% Similarity=0.193 Sum_probs=121.0
Q ss_pred ChHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHH---HHhcCCCccCCCCcchhhHHHHHH
Q psy3301 169 LTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVI---RKNINDGVSANNCITLNGFLFLHN 245 (608)
Q Consensus 169 l~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~---~~~~~~~~~~~~~i~~~~F~~l~~ 245 (608)
++++....++++|..+|.|++|.|+..|+..+++. +|..++.+++..++..+ +.+ + |.|+|++|+.++.
T Consensus 2 l~~~~~~~l~~~F~~~D~~~~G~i~~~el~~~l~~-~~~~~~~~~~~~l~~~~~~~d~~------~-g~i~~~eF~~~~~ 73 (149)
T 2mys_C 2 FSKAAADDFKEAFLLFDRTGDAKITASQVGDIARA-LGQNPTNAEINKILGNPSKEEMN------A-AAITFEEFLPMLQ 73 (149)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH-hCCCCCHHHHHHHHHHhhhcccc------C-CcCcHHHHHHHHH
Confidence 56788899999999999999999999999999987 79999999999999999 776 7 8999999998765
Q ss_pred HHHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccC
Q psy3301 246 LFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLC 325 (608)
Q Consensus 246 ~~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~ 325 (608)
...... .....+.++.+|+.||+|++|.|+.+||+.++..+
T Consensus 74 ~~~~~~---------------------------------------~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~ 114 (149)
T 2mys_C 74 AAANNK---------------------------------------DQGTFEDFVEGLRVFDKEGNGTVMGAELRHVLATL 114 (149)
T ss_pred HHhccC---------------------------------------CcchHHHHHHHHHHhCCCCCceEcHHHHHHHHHHh
Confidence 431100 01124678899999999999999999999999998
Q ss_pred CCCCCCCCccccccceecCCCCccchhhHHhHhh
Q psy3301 326 PPECPPWTDREMRAMVATNSKGWITMQGFLCYWI 359 (608)
Q Consensus 326 ~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~ 359 (608)
|....+.+...+++. |.|++|.|+|++|+..+.
T Consensus 115 g~~~~~~~~~~~~~~-d~~~dg~i~~~eF~~~~~ 147 (149)
T 2mys_C 115 GEKMTEEEVEELMKG-QEDSNGCINYEAFVKHIM 147 (149)
T ss_pred CCCCCHHHHHHHHhh-CCCCCCcEeHHHHHHHHh
Confidence 754555567888999 999999999999998764
No 162
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=99.68 E-value=8.8e-17 Score=148.16 Aligned_cols=142 Identities=15% Similarity=0.211 Sum_probs=120.2
Q ss_pred ccChHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCC-CCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHH
Q psy3301 167 QELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDA-PLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHN 245 (608)
Q Consensus 167 ~~l~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~-~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~ 245 (608)
..+++.....++++|..+|.|++|.|+..|+..+++. +|. .++..++..++.. .+|.|+|++|+.++.
T Consensus 17 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~-~g~~~~~~~~~~~l~~~----------~dg~i~~~eF~~~~~ 85 (166)
T 2mys_B 17 SMFDETEIEDFKEAFTVIDQNADGIIDKDDLRETFAA-MGRLNVKNEELDAMIKE----------ASGPINFTVFLTMFG 85 (166)
T ss_pred hhCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHH-hCCCCCCHHHHHHHHHH----------CCCCcCHHHHHHHHH
Confidence 4577888999999999999999999999999999987 688 8999888887764 278999999998775
Q ss_pred HHHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccC
Q psy3301 246 LFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLC 325 (608)
Q Consensus 246 ~~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~ 325 (608)
....... ..+.++.+|+.||+|++|+|+.+||+.++..+
T Consensus 86 ~~~~~~~-----------------------------------------~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~ 124 (166)
T 2mys_B 86 EKLKGAD-----------------------------------------PEDVIMGAFKVLDPDGKGSIKKSFLEELLTTG 124 (166)
T ss_pred HHhccCC-----------------------------------------cHHHHHHHHHHhCCCCCcceeHHHHHHHHHHc
Confidence 4322100 13568889999999999999999999999998
Q ss_pred CCCCCCCCccccccceecCCCCccchhhHHhHhhh
Q psy3301 326 PPECPPWTDREMRAMVATNSKGWITMQGFLCYWIL 360 (608)
Q Consensus 326 ~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~ 360 (608)
|....+.++..++..+|.|++|.|+|+||+..+.-
T Consensus 125 g~~~~~~~~~~~~~~~D~d~dg~I~~~eF~~~~~~ 159 (166)
T 2mys_B 125 GGRFTPEEIKNMWAAFPPDVAGNVDYKNICYVITH 159 (166)
T ss_pred CCCCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHHh
Confidence 75556666889999999999999999999998753
No 163
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.68 E-value=1.3e-17 Score=156.30 Aligned_cols=143 Identities=15% Similarity=0.123 Sum_probs=84.3
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEe-------cceEeCCcceeEeeeeccccc-----
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTI-------NTTTVYGQEKYLVLKEILVRD----- 474 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i-------~~~~v~Gqe~~~~l~~~~~~~----- 474 (608)
.+.+||+|+|++|||||||+++|+++.+...+.++.+.+.....+.+ .-++++|+++|..++..+++.
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 56799999999999999999999999888776666654221122333 334559999999888888776
Q ss_pred -ccccCCCCcc--cccccc------cCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHH
Q psy3301 475 -EQLPVLLPVD--VDCDKY------FSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVF 543 (608)
Q Consensus 475 -v~d~~l~~~~--~~~~~~------~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F 543 (608)
||| +++.+ ..+..| ...+++|+++||||+||.+.+++..+++.+++++++++ ++++| ++.|++++|
T Consensus 86 ~v~d--~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~l~ 162 (183)
T 2fu5_C 86 LVYD--ITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIK-FMETSAKANINVENAF 162 (183)
T ss_dssp EEEE--TTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCE-EEECCC---CCHHHHH
T ss_pred EEEE--CcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCe-EEEEeCCCCCCHHHHH
Confidence 788 77654 222212 22468999999999999887778788899999999986 88999 899999999
Q ss_pred HHHHHHHcC
Q psy3301 544 VKLATMAAF 552 (608)
Q Consensus 544 ~~l~~~a~~ 552 (608)
..|++.+..
T Consensus 163 ~~l~~~i~~ 171 (183)
T 2fu5_C 163 FTLARDIKA 171 (183)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988743
No 164
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.68 E-value=6.7e-17 Score=152.51 Aligned_cols=144 Identities=17% Similarity=0.162 Sum_probs=111.7
Q ss_pred CCCceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCc-------eEecceEeCCcceeEeeeeccccc---
Q psy3301 405 TTRNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPP-------YTINTTTVYGQEKYLVLKEILVRD--- 474 (608)
Q Consensus 405 ~~r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~-------~~i~~~~v~Gqe~~~~l~~~~~~~--- 474 (608)
.....+||+|+|++|||||||+++|+++.+...+.++.+.+..... +.+.-++++|+++|..++..+++.
T Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 97 (189)
T 2gf9_A 18 GSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMG 97 (189)
T ss_dssp TCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSE
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCE
Confidence 3456799999999999999999999999998777767665211111 233334559999998888877776
Q ss_pred ---ccccCCCCcc--ccccc------ccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHH
Q psy3301 475 ---EQLPVLLPVD--VDCDK------YFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDRE 541 (608)
Q Consensus 475 ---v~d~~l~~~~--~~~~~------~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e 541 (608)
||| +++.+ +.+.. .....++|+++|+||+||.+.+++..+++++++++++++ ++++| ++.|+++
T Consensus 98 ii~v~d--~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~gi~~ 174 (189)
T 2gf9_A 98 FLLMYD--IANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFE-FFEASAKENINVKQ 174 (189)
T ss_dssp EEEEEE--TTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEECBTTTTBSHHH
T ss_pred EEEEEE--CCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCe-EEEEECCCCCCHHH
Confidence 788 66654 22221 122468999999999999887777778899999999985 88999 8999999
Q ss_pred HHHHHHHHHc
Q psy3301 542 VFVKLATMAA 551 (608)
Q Consensus 542 ~F~~l~~~a~ 551 (608)
+|..|++.+.
T Consensus 175 l~~~l~~~i~ 184 (189)
T 2gf9_A 175 VFERLVDVIC 184 (189)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998763
No 165
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.68 E-value=5.7e-17 Score=151.92 Aligned_cols=142 Identities=19% Similarity=0.197 Sum_probs=111.8
Q ss_pred CCceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEe-------cceEeCCcceeEeeeeccccc----
Q psy3301 406 TRNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTI-------NTTTVYGQEKYLVLKEILVRD---- 474 (608)
Q Consensus 406 ~r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i-------~~~~v~Gqe~~~~l~~~~~~~---- 474 (608)
....+||+|+|++|||||||+++|+++.+...+.++.+. .+...+.+ .-++.+|+++|..++..+++.
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 93 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIED-SYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGF 93 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccc-eeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 345799999999999999999999999998888766654 22222222 234559999998888877765
Q ss_pred --ccccCCCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc---cCCCHH
Q psy3301 475 --EQLPVLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS---AANNDR 540 (608)
Q Consensus 475 --v~d~~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S---~~~~v~ 540 (608)
||| +++.+ ..+. +.....++|+++||||+||.+.+++..+++.+++++++++ ++++| ++.|++
T Consensus 94 i~v~d--~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~~v~ 170 (183)
T 3kkq_A 94 LIVYS--VTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIP-YIETSAKDPPLNVD 170 (183)
T ss_dssp EEEEE--TTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCC-EEEEBCSSSCBSHH
T ss_pred EEEEE--CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCe-EEEeccCCCCCCHH
Confidence 788 77654 2222 2234578999999999999988888889999999999976 89999 478999
Q ss_pred HHHHHHHHHHc
Q psy3301 541 EVFVKLATMAA 551 (608)
Q Consensus 541 e~F~~l~~~a~ 551 (608)
++|..|++.+.
T Consensus 171 ~l~~~l~~~i~ 181 (183)
T 3kkq_A 171 KTFHDLVRVIR 181 (183)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998763
No 166
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.68 E-value=7.3e-17 Score=152.85 Aligned_cols=145 Identities=14% Similarity=0.149 Sum_probs=113.9
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceE-------ecceEeCCcceeEeeeeccccc-----
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYT-------INTTTVYGQEKYLVLKEILVRD----- 474 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~-------i~~~~v~Gqe~~~~l~~~~~~~----- 474 (608)
...+||+|+|++|||||||+++|+++.+...+.++.+.+.....+. +.-++++|+++|..++..+++.
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 93 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 93 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence 5679999999999999999999999999888776666522222333 3334559999998888777766
Q ss_pred -ccccCCCCcc--cccc------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHH
Q psy3301 475 -EQLPVLLPVD--VDCD------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVF 543 (608)
Q Consensus 475 -v~d~~l~~~~--~~~~------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F 543 (608)
||| +++.+ ..+. ......++|+++|+||+||.+.+++...++.++++.++++ ++++| ++.|++++|
T Consensus 94 ~v~d--~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~gv~~l~ 170 (196)
T 3tkl_A 94 VVYD--VTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIP-FLETSAKNATNVEQSF 170 (196)
T ss_dssp EEEE--TTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCC-EEEECTTTCTTHHHHH
T ss_pred EEEE--CcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCc-EEEEeCCCCCCHHHHH
Confidence 788 77654 2222 1223468999999999999988888888999999999986 99999 899999999
Q ss_pred HHHHHHHcCCC
Q psy3301 544 VKLATMAAFPR 554 (608)
Q Consensus 544 ~~l~~~a~~p~ 554 (608)
..|++.+....
T Consensus 171 ~~l~~~i~~~~ 181 (196)
T 3tkl_A 171 MTMAAEIKKRM 181 (196)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHh
Confidence 99999886543
No 167
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=99.68 E-value=2.3e-17 Score=147.99 Aligned_cols=139 Identities=15% Similarity=0.215 Sum_probs=116.6
Q ss_pred ChHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHHH
Q psy3301 169 LTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFM 248 (608)
Q Consensus 169 l~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~~ 248 (608)
++++.+..++++|..+|.|++|.|+..|+..+++. +|..++..++..++.. ++|.|+|++|+.++....
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~-~g~~~~~~~~~~~~~~----------~~g~i~~~eF~~~~~~~~ 69 (143)
T 3j04_B 1 FDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLAS-MGKNPTDEYLEGMMSE----------APGPINFTMFLTMFGEKL 69 (143)
T ss_dssp CCHHHHHHHHHHHTTTCSSCTTCCCHHHHHHHHHH-TSCCCCHHHHHTTTTT----------SSSCCCHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHH-hCCCCCHHHHHHHHHh----------CCCCcCHHHHHHHHHHHh
Confidence 35678899999999999999999999999999987 7989999888777654 288999999997765321
Q ss_pred hcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCCCC
Q psy3301 249 QRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPE 328 (608)
Q Consensus 249 ~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~~~ 328 (608)
... ...+.++.+|+.||+|++|+|+.+||+.++..+|..
T Consensus 70 ~~~-----------------------------------------~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~ 108 (143)
T 3j04_B 70 NGT-----------------------------------------DPEDVIRNAFACFDEEASGFIHEDHLRELLTTMGDR 108 (143)
T ss_dssp TSS-----------------------------------------CCHHHHHHHHTTSCSSSCCCCCTTTHHHHHHTSSSC
T ss_pred ccC-----------------------------------------CcHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCC
Confidence 110 013678899999999999999999999999999855
Q ss_pred CCCCCccccccceecCCCCccchhhHHhHhh
Q psy3301 329 CPPWTDREMRAMVATNSKGWITMQGFLCYWI 359 (608)
Q Consensus 329 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~ 359 (608)
..+.++..+++.+|.|++|.|+|+||+..+.
T Consensus 109 ~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~ 139 (143)
T 3j04_B 109 FTDEEVDEMYREAPIDKKGNFNYVEFTRILK 139 (143)
T ss_dssp CCHHHHHHHHHHTTCCSSSCCCSTHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCCCCcCcHHHHHHHHh
Confidence 5556678899999999999999999998764
No 168
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.68 E-value=5.2e-17 Score=150.74 Aligned_cols=141 Identities=16% Similarity=0.199 Sum_probs=95.7
Q ss_pred ceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecc-------eEeCCcce--eEeeeeccccc----
Q psy3301 408 NVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINT-------TTVYGQEK--YLVLKEILVRD---- 474 (608)
Q Consensus 408 ~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~-------~~v~Gqe~--~~~l~~~~~~~---- 474 (608)
+.+||+|+|++|||||||+++|+++.+...+. +++.+.+...+.+++ ++++|++. +..+...+++.
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CC-CSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccC-ccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 46899999999999999999999998876654 444422233334433 33388887 56666665554
Q ss_pred --ccccCCCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHH
Q psy3301 475 --EQLPVLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDRE 541 (608)
Q Consensus 475 --v~d~~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e 541 (608)
+|| +++.+ +.+. ......++|+++||||+||.+.+++..+++..+++.++++ ++++| ++.|+++
T Consensus 82 i~v~d--~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~g~gi~~ 158 (175)
T 2nzj_A 82 VIVYS--IADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCK-FIETSATLQHNVAE 158 (175)
T ss_dssp EEEEE--TTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSE-EEECBTTTTBSHHH
T ss_pred EEEEE--CCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCe-EEEEecCCCCCHHH
Confidence 788 77655 2222 2223468999999999999887878778889999999975 88999 8999999
Q ss_pred HHHHHHHHHcC
Q psy3301 542 VFVKLATMAAF 552 (608)
Q Consensus 542 ~F~~l~~~a~~ 552 (608)
+|..|++.+..
T Consensus 159 l~~~l~~~~~~ 169 (175)
T 2nzj_A 159 LFEGVVRQLRL 169 (175)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987743
No 169
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.68 E-value=5.9e-17 Score=151.11 Aligned_cols=145 Identities=15% Similarity=0.173 Sum_probs=110.8
Q ss_pred CCceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEe-------cceEeCCcceeEeeeeccccc----
Q psy3301 406 TRNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTI-------NTTTVYGQEKYLVLKEILVRD---- 474 (608)
Q Consensus 406 ~r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i-------~~~~v~Gqe~~~~l~~~~~~~---- 474 (608)
..+.+||+|+|++|||||||+++++++.+...+.++.+.+.....+.+ .-++++|+++|..++..+++.
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 85 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV 85 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence 457799999999999999999999999988777766665222233333 334559999999888887776
Q ss_pred --ccccCCCCcc--ccccccc-----CCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHH
Q psy3301 475 --EQLPVLLPVD--VDCDKYF-----STSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVF 543 (608)
Q Consensus 475 --v~d~~l~~~~--~~~~~~~-----~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F 543 (608)
||| +++.+ ..+..|+ ..+++|+++|+||+|+.+.+.+...++.++++.++++ ++++| ++.|++++|
T Consensus 86 i~v~d--~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l~ 162 (181)
T 3tw8_B 86 IVVYD--VTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQ-LFETSAKENVNVEEMF 162 (181)
T ss_dssp EEEEE--TTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCC-EEECBTTTTBSHHHHH
T ss_pred EEEEE--CCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCe-EEEEECCCCCCHHHHH
Confidence 788 76654 2222111 2468999999999999988888788899999999986 89999 899999999
Q ss_pred HHHHHHHcCC
Q psy3301 544 VKLATMAAFP 553 (608)
Q Consensus 544 ~~l~~~a~~p 553 (608)
..|++.+...
T Consensus 163 ~~l~~~~~~~ 172 (181)
T 3tw8_B 163 NCITELVLRA 172 (181)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987554
No 170
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.68 E-value=5.5e-17 Score=154.82 Aligned_cols=149 Identities=15% Similarity=0.203 Sum_probs=112.1
Q ss_pred ccCCCceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCc-----C-CCceEecceEeCCcceeEeeeeccccc--
Q psy3301 403 KQTTRNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVE-----C-DPPYTINTTTVYGQEKYLVLKEILVRD-- 474 (608)
Q Consensus 403 ~~~~r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~-----~-~~~~~i~~~~v~Gqe~~~~l~~~~~~~-- 474 (608)
+......+||+|+|++|||||||+++|+++.+...+.++.+... + ...+.+.-++++|+++|..++..+++.
T Consensus 18 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 97 (201)
T 3oes_A 18 GMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVH 97 (201)
T ss_dssp -----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCC
T ss_pred CCCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCC
Confidence 33445679999999999999999999999999888876665411 0 122344556669999999888888776
Q ss_pred ----ccccCCCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCH
Q psy3301 475 ----EQLPVLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANND 539 (608)
Q Consensus 475 ----v~d~~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v 539 (608)
+|| +++.+ ..+. ......++|+++||||+||...+++...++.++++.++++ ++++| ++.|+
T Consensus 98 ~~i~v~d--~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~v 174 (201)
T 3oes_A 98 GYVLVYS--VTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGAT-FMESSARENQLT 174 (201)
T ss_dssp EEEEEEE--TTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEECCTTCHHHH
T ss_pred EEEEEEe--CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCe-EEEEeCCCCCCH
Confidence 788 77654 2222 2223468999999999999988888888999999999985 88899 89999
Q ss_pred HHHHHHHHHHHcCCC
Q psy3301 540 REVFVKLATMAAFPR 554 (608)
Q Consensus 540 ~e~F~~l~~~a~~p~ 554 (608)
+++|..|++.+....
T Consensus 175 ~~l~~~l~~~i~~~~ 189 (201)
T 3oes_A 175 QGIFTKVIQEIARVE 189 (201)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999886654
No 171
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.68 E-value=6.7e-17 Score=150.45 Aligned_cols=143 Identities=15% Similarity=0.174 Sum_probs=109.9
Q ss_pred CCceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceE-------ecceEeCCcceeEeeeeccccc----
Q psy3301 406 TRNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYT-------INTTTVYGQEKYLVLKEILVRD---- 474 (608)
Q Consensus 406 ~r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~-------i~~~~v~Gqe~~~~l~~~~~~~---- 474 (608)
....+||+|+|++|||||||+++++++.+...+.++.+.+.....+. +.-++++|+++|..++..+++.
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence 34679999999999999999999999999877776666522222222 2333458999888777776665
Q ss_pred --ccccCCCCcc--cccc------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHH
Q psy3301 475 --EQLPVLLPVD--VDCD------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREV 542 (608)
Q Consensus 475 --v~d~~l~~~~--~~~~------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~ 542 (608)
+|| +++.. ..+. ......++|+++|+||+|+.+.+++..+++.+++++++++ ++++| ++.|++++
T Consensus 92 i~v~d--~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l 168 (179)
T 1z0f_A 92 LMVYD--ITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLL-FLEASAKTGENVEDA 168 (179)
T ss_dssp EEEEE--TTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECCTTTCTTHHHH
T ss_pred EEEEe--CcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEeCCCCCCHHHH
Confidence 778 66654 2222 1223478999999999999887777778899999999985 88899 89999999
Q ss_pred HHHHHHHHc
Q psy3301 543 FVKLATMAA 551 (608)
Q Consensus 543 F~~l~~~a~ 551 (608)
|..|++.+.
T Consensus 169 ~~~l~~~i~ 177 (179)
T 1z0f_A 169 FLEAAKKIY 177 (179)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHh
Confidence 999998774
No 172
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.67 E-value=5.5e-17 Score=174.67 Aligned_cols=142 Identities=22% Similarity=0.203 Sum_probs=104.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCC--cCCCCCcceEecCccCCCceeEEEEeCCC----------CCCChHHHH
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPE--LVPSKAEEITIPPDVTPEMVPTHIVDYSE----------VDQTVDELT 75 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G----------~~~~~~~~~ 75 (608)
...+||+++|++|||||||+++|++..... ..+++ +...+...+...+..+.|||||| ++.+.....
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gt-t~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 271 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGT-TRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRA 271 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC-------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCe-EEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHH
Confidence 456899999999999999999999876322 23322 22222233444566899999999 666665544
Q ss_pred -HHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC----------------------
Q psy3301 76 -EEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST---------------------- 132 (608)
Q Consensus 76 -~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~---------------------- 132 (608)
.+++.+|++++|+|+++..+-.. ..|...+.. .++|++||+||+|+.....
T Consensus 272 ~~~~~~ad~~llviD~~~~~~~~~--~~~~~~~~~----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (456)
T 4dcu_A 272 LKAIDRSEVVAVVLDGEEGIIEQD--KRIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPI 345 (456)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHH----TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHhhCCEEEEEEeCCCCcCHHH--HHHHHHHHH----cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCE
Confidence 47899999999999998655333 256666653 4689999999999986432
Q ss_pred cccCcccCcCHHHHHHHHHHHHhC
Q psy3301 133 VESSAKTLKNISEMFYYAQKAVLH 156 (608)
Q Consensus 133 ~e~SAk~~~~i~~lf~~l~~~i~~ 156 (608)
++|||++|.||+++|..+.+.+..
T Consensus 346 ~~~SA~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 346 LFMSALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp EECCTTTCTTGGGHHHHHHHHHHH
T ss_pred EEEcCCCCcCHHHHHHHHHHHHHH
Confidence 889999999999999999988743
No 173
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.67 E-value=1.6e-17 Score=155.30 Aligned_cols=143 Identities=19% Similarity=0.225 Sum_probs=102.5
Q ss_pred ceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEe-------cceEeCCcceeEeeeeccccc------
Q psy3301 408 NVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTI-------NTTTVYGQEKYLVLKEILVRD------ 474 (608)
Q Consensus 408 ~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i-------~~~~v~Gqe~~~~l~~~~~~~------ 474 (608)
..+||+|+|++|||||||+++|+++.+...+.+|.+. .+...+.+ .-++++|+++|..++..++++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFD-NFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 85 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC-----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeee-eEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEE
Confidence 4589999999999999999999999988877766654 22222222 234559999998888887776
Q ss_pred ccccCCCCcc--cccc-ccc-----CCCCCcEEEEEeCCCCCcchhc----------ccccHHHHHHHcCCCCceEEc--
Q psy3301 475 EQLPVLLPVD--VDCD-KYF-----STSKIPVMLVAGKSDMPRARQD----------YLMQPDIFCETHKLSPAHSFS-- 534 (608)
Q Consensus 475 v~d~~l~~~~--~~~~-~~~-----~~~~~p~ilVgnK~DL~~~~~~----------~~~~~~~~~~~~~~~~~~~~S-- 534 (608)
||| +++.+ +.+. .|. ..+++|+++||||+|+.+.+++ ..+++.++++.+++.+++++|
T Consensus 86 v~d--~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 163 (182)
T 3bwd_D 86 AFS--LISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSK 163 (182)
T ss_dssp EEE--TTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEE--CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECC
Confidence 788 77654 2222 111 1358999999999999766553 667889999999975589999
Q ss_pred cCCCHHHHHHHHHHHHcCC
Q psy3301 535 AANNDREVFVKLATMAAFP 553 (608)
Q Consensus 535 ~~~~v~e~F~~l~~~a~~p 553 (608)
++.|++++|..|++.++.|
T Consensus 164 ~~~gi~~l~~~l~~~i~~~ 182 (182)
T 3bwd_D 164 SQENVKGVFDAAIRVVLQP 182 (182)
T ss_dssp TCTTHHHHHHHHHHHHSCC
T ss_pred CCCCHHHHHHHHHHHHhcC
Confidence 8999999999999999876
No 174
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=99.67 E-value=2.4e-17 Score=150.83 Aligned_cols=149 Identities=12% Similarity=0.189 Sum_probs=123.5
Q ss_pred cChHHHHHHHHHHHHhcc--CCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHH
Q psy3301 168 ELTPECIKALTRIFKVCD--LDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHN 245 (608)
Q Consensus 168 ~l~~~~~~~L~~~f~~~D--~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~ 245 (608)
.++++.++.++++|..+| .|++|.|+..|+..+++. +|..++..++..++..++.+ +|.|+|++|+.++.
T Consensus 2 ~ls~~~~~~l~~~F~~~D~~~d~~G~i~~~el~~~l~~-lg~~~~~~~~~~l~~~~d~~-------~g~i~~~eF~~~~~ 73 (159)
T 2ovk_C 2 QLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRC-LGMNPTEAQVHQHGGTKKMG-------EKAYKLEEILPIYE 73 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSSSEEEGGGHHHHHHH-TTCCCCHHHHHHTTCCSSTT-------SCEEEHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHH-cCCCCCHHHHHHHHHHhcCC-------CCeEcHHHHHHHHH
Confidence 467888999999999999 999999999999999987 79999999998888877543 68999999997764
Q ss_pred HHHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccC
Q psy3301 246 LFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLC 325 (608)
Q Consensus 246 ~~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~ 325 (608)
....... ....+.++.+|+.||+|++|+|+.+||+.++..+
T Consensus 74 ~~~~~~~---------------------------------------~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~ 114 (159)
T 2ovk_C 74 EMSSKDT---------------------------------------GTAADEFMEAFKTFDREGQGLISSAEIRNVLKML 114 (159)
T ss_dssp HHTTCST---------------------------------------TCCHHHHHHHHHHTCTTSSSEECHHHHHHHHHHS
T ss_pred HHhhccC---------------------------------------CCcHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHh
Confidence 3211100 0014678899999999999999999999999999
Q ss_pred CCCCCCCCcccccc--ceecCCCCccchhhHHhHhhhhhc
Q psy3301 326 PPECPPWTDREMRA--MVATNSKGWITMQGFLCYWILTTL 363 (608)
Q Consensus 326 ~~~~~~~~~~~~~~--~~d~~~~g~i~~~ef~~~w~~~~~ 363 (608)
|....+.+...+++ .+|.|++|.|+|+||+..+.-..+
T Consensus 115 g~~~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~~~~~ 154 (159)
T 2ovk_C 115 GERITEDQCNDIFTFCDIREDIDGNIKYEDLMKKVMAGPF 154 (159)
T ss_dssp SSCCCHHHHHHHHHHTTCCCCTTCCEEHHHHHHHHHHCSS
T ss_pred CCCCCHHHHHHHHHHhcCCCCCCCcEeHHHHHHHHhcCCC
Confidence 85555566789999 999999999999999988765443
No 175
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.67 E-value=8.3e-17 Score=152.56 Aligned_cols=142 Identities=16% Similarity=0.210 Sum_probs=99.4
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcC--CCCCCCCCCCCCCcCCCceEecceE-------eCCcce-eEeeeeccccc--
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRK--HHDSSKTSITSPVECDPPYTINTTT-------VYGQEK-YLVLKEILVRD-- 474 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~--~~~~~~~~t~~~~~~~~~~~i~~~~-------v~Gqe~-~~~l~~~~~~~-- 474 (608)
...+||+|+|++|||||||+++|++. .|...+. +++.+.+...+.+++.. +.|++. +..+...+++.
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXE-VLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----G-GGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCcccc-ccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 35699999999999999999999963 3454443 34443333344444432 366655 55566666654
Q ss_pred ----ccccCCCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCH
Q psy3301 475 ----EQLPVLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANND 539 (608)
Q Consensus 475 ----v~d~~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v 539 (608)
||| +++.+ +.+. +.....++|+++||||+||.+.+++..+++..++..++++ ++++| ++.||
T Consensus 83 ~~i~v~d--v~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~-~~e~SA~~g~~v 159 (192)
T 2cjw_A 83 AYLIVYS--ITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXK-FIETSAAVQHNV 159 (192)
T ss_dssp EEEEEEE--TTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECBTTTTBSH
T ss_pred EEEEEEE--CCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCc-eEEeccccCCCH
Confidence 888 88765 3332 1123468999999999999877777777888999999875 88999 89999
Q ss_pred HHHHHHHHHHHcC
Q psy3301 540 REVFVKLATMAAF 552 (608)
Q Consensus 540 ~e~F~~l~~~a~~ 552 (608)
+++|..|++.+..
T Consensus 160 ~~lf~~l~~~~~~ 172 (192)
T 2cjw_A 160 KELFEGIVRQVRL 172 (192)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998743
No 176
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.67 E-value=1.6e-16 Score=151.98 Aligned_cols=144 Identities=17% Similarity=0.167 Sum_probs=112.1
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEec-------ceEeCCcceeEeeeeccccc-----
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTIN-------TTTVYGQEKYLVLKEILVRD----- 474 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~-------~~~v~Gqe~~~~l~~~~~~~----- 474 (608)
...+||+|+|++|||||||+++|+++.+...+.++.+.+.....+.++ -++++|+++|..++..+++.
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi 85 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII 85 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence 457999999999999999999999999988877777652221223333 33448999998888887776
Q ss_pred -ccccCCCCcc--cccc------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHH
Q psy3301 475 -EQLPVLLPVD--VDCD------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVF 543 (608)
Q Consensus 475 -v~d~~l~~~~--~~~~------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F 543 (608)
||| +++.+ ..+. ......++|+++|+||+||.+.+++..+++.++++.++++ ++++| ++.|++++|
T Consensus 86 lv~d--~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~gi~~l~ 162 (206)
T 2bcg_Y 86 IVYD--VTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMP-FLETSALDSTNVEDAF 162 (206)
T ss_dssp EEEE--TTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCC-EEECCTTTCTTHHHHH
T ss_pred EEEE--CcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCe-EEEEeCCCCCCHHHHH
Confidence 788 76654 2222 1223568999999999999887777778899999999985 88999 899999999
Q ss_pred HHHHHHHcCC
Q psy3301 544 VKLATMAAFP 553 (608)
Q Consensus 544 ~~l~~~a~~p 553 (608)
..|++.+...
T Consensus 163 ~~l~~~i~~~ 172 (206)
T 2bcg_Y 163 LTMARQIKES 172 (206)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987543
No 177
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.67 E-value=2.6e-17 Score=155.30 Aligned_cols=140 Identities=17% Similarity=0.108 Sum_probs=104.1
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEe-------cceEeCCcceeEeeeeccccc-----
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTI-------NTTTVYGQEKYLVLKEILVRD----- 474 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i-------~~~~v~Gqe~~~~l~~~~~~~----- 474 (608)
...+||+|+|++|||||||+++|+++.|...+.+|++. .+...+.+ .-++++|+++|..+ ..+++.
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~i 96 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLED-TYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFL 96 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccc-eeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEE
Confidence 45699999999999999999999999998888777654 22222222 33455999998876 334444
Q ss_pred -ccccCCCCcc--cccccccC---------CCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc---cCCCH
Q psy3301 475 -EQLPVLLPVD--VDCDKYFS---------TSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS---AANND 539 (608)
Q Consensus 475 -v~d~~l~~~~--~~~~~~~~---------~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S---~~~~v 539 (608)
||| +++.+ ..+..|+. ..++|+++||||+||.+.+++..+++.+++++++++ ++++| ++.|+
T Consensus 97 lv~d--~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sa~~~g~gv 173 (187)
T 3c5c_A 97 VVYS--VDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCL-FFEVSACLDFEHV 173 (187)
T ss_dssp EEEE--TTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCE-EEECCSSSCSHHH
T ss_pred EEEE--CCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCc-EEEEeecCccccH
Confidence 788 77655 33332211 268999999999999888888888999999999985 88888 47899
Q ss_pred HHHHHHHHHHHc
Q psy3301 540 REVFVKLATMAA 551 (608)
Q Consensus 540 ~e~F~~l~~~a~ 551 (608)
+++|..|++.+.
T Consensus 174 ~~lf~~l~~~i~ 185 (187)
T 3c5c_A 174 QHVFHEAVREAR 185 (187)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998774
No 178
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin; EF-hands, calcium, metal binding protein; 2.17A {Bos taurus} PDB: 2f2p_A
Probab=99.67 E-value=4.8e-17 Score=151.86 Aligned_cols=146 Identities=22% Similarity=0.307 Sum_probs=122.1
Q ss_pred cChHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHH
Q psy3301 168 ELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLF 247 (608)
Q Consensus 168 ~l~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~ 247 (608)
.++++....++++|..+|.|++|.|+..|+..+++. +|..++..+++.++..++.+ ++|.|+|++|+.++...
T Consensus 4 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~-~~~~~~~~~~~~l~~~~D~~------~~g~i~~~EF~~~~~~~ 76 (179)
T 2f2o_A 4 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRS-LGQNPTEAELQDMINEVDAD------GNGTIDFPEFLTMMARK 76 (179)
T ss_dssp --CCSHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHH-TTCCCCHHHHHHHHHHHCTT------CSSSBCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH-cCCCCCHHHHHHHHHHhccC------CCCCCcHHHHHHHHHHH
Confidence 355667889999999999999999999999999987 79999999999999999988 89999999999876543
Q ss_pred HhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCCC
Q psy3301 248 MQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPP 327 (608)
Q Consensus 248 ~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~~ 327 (608)
... ....+.++.+|+.||+|++|+|+.+|++.++..+|.
T Consensus 77 ~~~-----------------------------------------~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~g~ 115 (179)
T 2f2o_A 77 MKD-----------------------------------------TDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGE 115 (179)
T ss_dssp HHH-----------------------------------------HHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHC--
T ss_pred ccC-----------------------------------------cccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCC
Confidence 221 112456889999999999999999999999999874
Q ss_pred CCCCCCccccccceecCCCCccchhhHHhHhhhh
Q psy3301 328 ECPPWTDREMRAMVATNSKGWITMQGFLCYWILT 361 (608)
Q Consensus 328 ~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~~ 361 (608)
...+.+...++..+|.|++|.|+|+||+..+.-.
T Consensus 116 ~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~~ 149 (179)
T 2f2o_A 116 KLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149 (179)
T ss_dssp CCCHHHHHHHHHHHCTTCSSSEEHHHHHHHSCC-
T ss_pred CCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHc
Confidence 4444557888999999999999999999987543
No 179
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Probab=99.67 E-value=1.6e-16 Score=145.35 Aligned_cols=147 Identities=21% Similarity=0.296 Sum_probs=125.4
Q ss_pred cChHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHH
Q psy3301 168 ELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLF 247 (608)
Q Consensus 168 ~l~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~ 247 (608)
.++++....++++|..+|.|++|.|+..|+..+++. +|..++.+++..++..++.+ ++|.|+|++|+.++...
T Consensus 13 ~ls~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~d~~------~~g~i~~~ef~~~~~~~ 85 (162)
T 1top_A 13 FLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRM-LGQNPTKEELDAIIEEVDED------GSGTIDFEEFLVMMVRQ 85 (162)
T ss_dssp HSCHHHHHHHHHHHHTTTCSCSSEEEGGGHHHHHHH-TTCCCCHHHHHHHHHHHCTT------SCCEEEHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHH-cCCCCCHHHHHHHHHHHcCC------CCCcEeHHHHHHHHHHH
Confidence 577888999999999999999999999999999987 79999999999999999888 79999999999877644
Q ss_pred HhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCCC
Q psy3301 248 MQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPP 327 (608)
Q Consensus 248 ~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~~ 327 (608)
..... .....+.++.+|+.||.|++|+|+.+|++.++...|.
T Consensus 86 ~~~~~--------------------------------------~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~ 127 (162)
T 1top_A 86 MKEDA--------------------------------------KGKSEEELANCFRIFDKNADGFIDIEELGEILRATGE 127 (162)
T ss_dssp HHHHH--------------------------------------HHHHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHTTTC
T ss_pred hcccc--------------------------------------ccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCC
Confidence 32100 0113567899999999999999999999999999874
Q ss_pred CCCCCCccccccceecCCCCccchhhHHhHhh
Q psy3301 328 ECPPWTDREMRAMVATNSKGWITMQGFLCYWI 359 (608)
Q Consensus 328 ~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~ 359 (608)
...+.+...++..+|.|++|.|+|+||+..+.
T Consensus 128 ~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~~ 159 (162)
T 1top_A 128 HVTEEDIEDLMKDSDKNNDGRIDFDEFLKMME 159 (162)
T ss_dssp CCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHh
Confidence 44445578889999999999999999998764
No 180
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.67 E-value=1e-16 Score=150.79 Aligned_cols=140 Identities=14% Similarity=0.073 Sum_probs=104.2
Q ss_pred CCCceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecc-------eEeCCcceeEeeeeccccc---
Q psy3301 405 TTRNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINT-------TTVYGQEKYLVLKEILVRD--- 474 (608)
Q Consensus 405 ~~r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~-------~~v~Gqe~~~~l~~~~~~~--- 474 (608)
.....+||+|+|++|||||||+++|+++.|...+.+|.+ .|...+.+++ .+++|+++|. +++.
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~ 88 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG--RFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDA 88 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE--EEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc--eEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCE
Confidence 345669999999999999999999999999887776643 2223333333 3448888776 2222
Q ss_pred ---ccccCCCCcc--cccc-------cccCCCCCcEEEEEeCCCCC--cchhcccccHHHHHHHcCCCCceEEc--cCCC
Q psy3301 475 ---EQLPVLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMP--RARQDYLMQPDIFCETHKLSPAHSFS--AANN 538 (608)
Q Consensus 475 ---v~d~~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~--~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~ 538 (608)
||| +++.+ ..+. .+....++|++|||||+||. ..+++..+++.+++++++..+++++| ++.|
T Consensus 89 ~i~v~d--~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~g 166 (184)
T 3ihw_A 89 VVFVFS--LEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLN 166 (184)
T ss_dssp EEEEEE--TTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBT
T ss_pred EEEEEE--CcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCC
Confidence 788 77765 2322 22223689999999999994 56777788999999999844589999 8999
Q ss_pred HHHHHHHHHHHHcCC
Q psy3301 539 DREVFVKLATMAAFP 553 (608)
Q Consensus 539 v~e~F~~l~~~a~~p 553 (608)
++++|..|++.+...
T Consensus 167 v~~lf~~l~~~i~~~ 181 (184)
T 3ihw_A 167 VERVFQDVAQKVVAL 181 (184)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987543
No 181
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.67 E-value=4.8e-16 Score=164.57 Aligned_cols=148 Identities=17% Similarity=0.165 Sum_probs=108.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcC--CC----------CCcceEecC-----cc---CCCceeEEEEeCCC
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPELV--PS----------KAEEITIPP-----DV---TPEMVPTHIVDYSE 66 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~--~~----------~~~~~~i~~-----~~---~~~~~~~~i~Dt~G 66 (608)
.++.++|+++|++|+|||||+++|++....... .. .....+... .. ......+.||||||
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 456899999999999999999999985433210 00 000011100 00 11226799999999
Q ss_pred CCCChHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC--------------
Q psy3301 67 VDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-------------- 132 (608)
Q Consensus 67 ~~~~~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-------------- 132 (608)
+++|...+...+..+|++++|+|+++..++.... .|+..+... ...|+++|+||+|+.+...
T Consensus 85 h~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~-~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~ 160 (403)
T 3sjy_A 85 HEVLMATMLSGAALMDGAILVVAANEPFPQPQTR-EHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG 160 (403)
T ss_dssp CGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHH-HHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHH-HHHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999887666655 455555532 1258999999999975431
Q ss_pred --------cccCcccCcCHHHHHHHHHHHHhCCC
Q psy3301 133 --------VESSAKTLKNISEMFYYAQKAVLHPM 158 (608)
Q Consensus 133 --------~e~SAk~~~~i~~lf~~l~~~i~~~~ 158 (608)
+++||++|.||+++++.+.+.+..+.
T Consensus 161 ~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~ 194 (403)
T 3sjy_A 161 TWAENVPIIPVSALHKINIDSLIEGIEEYIKTPY 194 (403)
T ss_dssp STTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred hCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCC
Confidence 88999999999999999998775443
No 182
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.66 E-value=6.3e-17 Score=155.65 Aligned_cols=145 Identities=17% Similarity=0.206 Sum_probs=110.4
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCce-------EecceEeCCcceeEeeeeccccc-----
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPY-------TINTTTVYGQEKYLVLKEILVRD----- 474 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~-------~i~~~~v~Gqe~~~~l~~~~~~~----- 474 (608)
...+||+|+|++|||||||+++|+++.|...+.+|++. .+...+ .+.-++++|+++|..++..++++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFD-NFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCC-CEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccce-eEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 35699999999999999999999999998888777665 222222 23334459999999999888876
Q ss_pred -ccccCCCCcc--cccc-ccc-----CCCCCcEEEEEeCCCCCcchhc--------ccccHHHHHHHcCCCCceEEc--c
Q psy3301 475 -EQLPVLLPVD--VDCD-KYF-----STSKIPVMLVAGKSDMPRARQD--------YLMQPDIFCETHKLSPAHSFS--A 535 (608)
Q Consensus 475 -v~d~~l~~~~--~~~~-~~~-----~~~~~p~ilVgnK~DL~~~~~~--------~~~~~~~~~~~~~~~~~~~~S--~ 535 (608)
||| +++.+ .... .|. ..+++|++|||||+||.+.+++ ..+++.++++++++.+++++| +
T Consensus 86 lv~d--~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (212)
T 2j0v_A 86 LAFS--LISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKT 163 (212)
T ss_dssp EEEE--TTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred EEEE--CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCC
Confidence 788 77655 2221 111 1358999999999999766543 677889999999975589999 8
Q ss_pred CCCHHHHHHHHHHHHcCCC
Q psy3301 536 ANNDREVFVKLATMAAFPR 554 (608)
Q Consensus 536 ~~~v~e~F~~l~~~a~~p~ 554 (608)
+.|++++|..|++.+..+.
T Consensus 164 g~gi~~l~~~l~~~~~~~~ 182 (212)
T 2j0v_A 164 QQNVKAVFDTAIKVVLQPP 182 (212)
T ss_dssp CTTHHHHHHHHHHHHHCC-
T ss_pred CCCHHHHHHHHHHHHhhhh
Confidence 9999999999999998765
No 183
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.66 E-value=1.1e-17 Score=158.33 Aligned_cols=144 Identities=19% Similarity=0.156 Sum_probs=111.9
Q ss_pred CCceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCc-------eEecceEeCCcceeEeeeeccccc----
Q psy3301 406 TRNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPP-------YTINTTTVYGQEKYLVLKEILVRD---- 474 (608)
Q Consensus 406 ~r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~-------~~i~~~~v~Gqe~~~~l~~~~~~~---- 474 (608)
..+.+||+|+|++|||||||+++|+++.+...+.++++.+..... +.+.-++++|+++|..++..+++.
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 99 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGF 99 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEE
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEE
Confidence 457799999999999999999999999998887766655222122 223333448888888777777666
Q ss_pred --ccccCCCCcc--cccc------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHH
Q psy3301 475 --EQLPVLLPVD--VDCD------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREV 542 (608)
Q Consensus 475 --v~d~~l~~~~--~~~~------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~ 542 (608)
||| +++.+ +.+. ......++|+++||||+||.+.+++..+++.++++.++++ ++++| ++.|++++
T Consensus 100 i~v~d--~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l 176 (191)
T 3dz8_A 100 ILMYD--ITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFD-FFEASAKENISVRQA 176 (191)
T ss_dssp EEEEE--TTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEECBTTTTBSHHHH
T ss_pred EEEEE--CcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCe-EEEEECCCCCCHHHH
Confidence 788 77654 2222 1223478999999999999988888888999999999995 89999 89999999
Q ss_pred HHHHHHHHcC
Q psy3301 543 FVKLATMAAF 552 (608)
Q Consensus 543 F~~l~~~a~~ 552 (608)
|..|++.+..
T Consensus 177 ~~~l~~~i~~ 186 (191)
T 3dz8_A 177 FERLVDAICD 186 (191)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998753
No 184
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.66 E-value=6.9e-17 Score=151.67 Aligned_cols=143 Identities=18% Similarity=0.236 Sum_probs=110.9
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCce-------EecceEeCCcceeEeeeeccccc-----
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPY-------TINTTTVYGQEKYLVLKEILVRD----- 474 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~-------~i~~~~v~Gqe~~~~l~~~~~~~----- 474 (608)
...+||+|+|++|||||||+++|+++.+...+.++.+.+.....+ .+.-++++|+++|..++..+++.
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 457999999999999999999999999988777666542222222 33334559999988877777665
Q ss_pred -ccccCCCCcc--cccc------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHH
Q psy3301 475 -EQLPVLLPVD--VDCD------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVF 543 (608)
Q Consensus 475 -v~d~~l~~~~--~~~~------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F 543 (608)
||| +++.+ ..+. ......++|+++|+||+||...+++...++.++++.++++ ++++| ++.|++++|
T Consensus 88 ~v~d--~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l~ 164 (186)
T 2bme_A 88 LVYD--ITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELM-FLETSALTGENVEEAF 164 (186)
T ss_dssp EEEE--TTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECCTTTCTTHHHHH
T ss_pred EEEE--CcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEecCCCCCCHHHHH
Confidence 788 76654 2222 1223578999999999999877777778899999999986 88899 899999999
Q ss_pred HHHHHHHcC
Q psy3301 544 VKLATMAAF 552 (608)
Q Consensus 544 ~~l~~~a~~ 552 (608)
..|++.+..
T Consensus 165 ~~l~~~~~~ 173 (186)
T 2bme_A 165 VQCARKILN 173 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998754
No 185
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.66 E-value=7e-17 Score=148.54 Aligned_cols=139 Identities=17% Similarity=0.205 Sum_probs=107.6
Q ss_pred eEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCC-------ceEecceEeCCcceeEeeeeccccc------c
Q psy3301 409 VYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDP-------PYTINTTTVYGQEKYLVLKEILVRD------E 475 (608)
Q Consensus 409 ~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~-------~~~i~~~~v~Gqe~~~~l~~~~~~~------v 475 (608)
.+||+|+|++|||||||+++++++.+...+.+|.+. .+.. .+.+.-++.+|+++|..++..+++. +
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIED-SYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEE-EEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccc-eEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 489999999999999999999999998877766654 2221 2334445669999988887777665 7
Q ss_pred cccCCCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHH
Q psy3301 476 QLPVLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFV 544 (608)
Q Consensus 476 ~d~~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~ 544 (608)
|| +++.+ ..+. +.....++|+++|+||+|+.+.+++..+++.+++++++..+++++| ++.|++++|.
T Consensus 82 ~d--~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 159 (167)
T 1c1y_A 82 YS--ITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFY 159 (167)
T ss_dssp EE--TTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHH
T ss_pred EE--CCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHH
Confidence 88 76654 2222 2233578999999999999887877788899999998433488899 8999999999
Q ss_pred HHHHHH
Q psy3301 545 KLATMA 550 (608)
Q Consensus 545 ~l~~~a 550 (608)
.|++.+
T Consensus 160 ~l~~~i 165 (167)
T 1c1y_A 160 DLVRQI 165 (167)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999876
No 186
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.66 E-value=6.5e-17 Score=170.69 Aligned_cols=140 Identities=19% Similarity=0.249 Sum_probs=99.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCc--CCCCC-cceEecCccCCCceeEEEEeCCCCCCChHH-------HHHH
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPEL--VPSKA-EEITIPPDVTPEMVPTHIVDYSEVDQTVDE-------LTEE 77 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~--~~~~~-~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~~ 77 (608)
...++|+|+|+.|+|||||+++|++..+... .++++ ........+.. ...+.+|||||++.+... ...+
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~-~~~l~liDTpG~~d~~~l~~~~~~~~~~~ 110 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHP-IGPVTLVDTPGLDDVGELGRLRVEKARRV 110 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETT-TEEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECC-CCeEEEEECcCCCcccchhHHHHHHHHHH
Confidence 4568999999999999999999999886422 22221 11122222222 237999999998876432 5668
Q ss_pred HHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC---------------cccCcccCcC
Q psy3301 78 IQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST---------------VESSAKTLKN 142 (608)
Q Consensus 78 ~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~---------------~e~SAk~~~~ 142 (608)
++.+|++++|+|++..+. ...|+..+... ++|+++|+||+|+..... +++||++|.|
T Consensus 111 l~~aD~vllVvD~~~~~~----~~~~l~~l~~~----~~piIvV~NK~Dl~~~~~~~~~~~l~~~~g~~v~~vSAktg~g 182 (423)
T 3qq5_A 111 FYRADCGILVTDSAPTPY----EDDVVNLFKEM----EIPFVVVVNKIDVLGEKAEELKGLYESRYEAKVLLVSALQKKG 182 (423)
T ss_dssp HTSCSEEEEECSSSCCHH----HHHHHHHHHHT----TCCEEEECCCCTTTTCCCTHHHHHSSCCTTCCCCCCSSCCTTS
T ss_pred HhcCCEEEEEEeCCChHH----HHHHHHHHHhc----CCCEEEEEeCcCCCCccHHHHHHHHHHHcCCCEEEEECCCCCC
Confidence 899999999999833322 23677777642 789999999999986543 8999999999
Q ss_pred HHHHHHHHHHHHhC
Q psy3301 143 ISEMFYYAQKAVLH 156 (608)
Q Consensus 143 i~~lf~~l~~~i~~ 156 (608)
++++|+.+.+.+..
T Consensus 183 I~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 183 FDDIGKTISEILPG 196 (423)
T ss_dssp TTTHHHHHHHHSCC
T ss_pred HHHHHHHHHHhhhh
Confidence 99999999999854
No 187
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.66 E-value=2.7e-16 Score=163.79 Aligned_cols=144 Identities=16% Similarity=0.187 Sum_probs=105.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCc-CCCCCcceEecCccCCCceeEEEEeCCCCCCCh---------HHHHHH
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPEL-VPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTV---------DELTEE 77 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~---------~~~~~~ 77 (608)
...++|+++|++|||||||+++|++..+... .+..+..... ..+...+..+.+|||+|..... ......
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 243 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINV-GQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILAL 243 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEE-EEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeE-EEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHH
Confidence 4568999999999999999999999875322 2322222211 1223346789999999975432 111223
Q ss_pred HHhcCcEEEEEEcCChh--hHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC---------------cccCcccC
Q psy3301 78 IQKAHVICLVYSVVDDA--SIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST---------------VESSAKTL 140 (608)
Q Consensus 78 ~~~ad~iilV~d~~~~~--s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~---------------~e~SAk~~ 140 (608)
...+|++++|+|+++.. +++... .|+..+... ..+.|+++|+||+|+..... ++|||++|
T Consensus 244 ~~~ad~illV~D~s~~~~~~~~~~~-~~~~~i~~~--~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g 320 (357)
T 2e87_A 244 RYLGNLIIYIFDPSEHCGFPLEEQI-HLFEEVHGE--FKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKG 320 (357)
T ss_dssp GGTCSEEEEEECTTCTTSSCHHHHH-HHHHHHHHH--TTTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTT
T ss_pred HhcCCEEEEEEeCCccccCCHHHHH-HHHHHHHHh--cCCCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCC
Confidence 34699999999999877 777766 788777742 23789999999999975321 78999999
Q ss_pred cCHHHHHHHHHHHHh
Q psy3301 141 KNISEMFYYAQKAVL 155 (608)
Q Consensus 141 ~~i~~lf~~l~~~i~ 155 (608)
.||+++++++.+.+.
T Consensus 321 ~gi~~l~~~i~~~l~ 335 (357)
T 2e87_A 321 TGIDLVKEEIIKTLR 335 (357)
T ss_dssp BTHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999998874
No 188
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.66 E-value=6.7e-17 Score=154.18 Aligned_cols=144 Identities=17% Similarity=0.233 Sum_probs=102.4
Q ss_pred CCceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEec-------ceEeCCcceeEeeeeccccc----
Q psy3301 406 TRNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTIN-------TTTVYGQEKYLVLKEILVRD---- 474 (608)
Q Consensus 406 ~r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~-------~~~v~Gqe~~~~l~~~~~~~---- 474 (608)
....+||+|+|++|||||||+++|+++.+...+.++.+.+.....+.++ -++++|+++|..++..+++.
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 101 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 101 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence 3567999999999999999999999999988777666652222233333 33448999988888777766
Q ss_pred --ccccCCCCcc--cccccc------cCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHH
Q psy3301 475 --EQLPVLLPVD--VDCDKY------FSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREV 542 (608)
Q Consensus 475 --v~d~~l~~~~--~~~~~~------~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~ 542 (608)
||| +++.+ ..+..| ....++|+++|+||+|+...+++...++.++++.++++ ++++| ++.|++++
T Consensus 102 i~v~d--~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~SA~~g~gi~~l 178 (200)
T 2o52_A 102 LLVYD--ITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELM-FLETSALTGENVEEA 178 (200)
T ss_dssp EEEEE--TTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEEECTTTCTTHHHH
T ss_pred EEEEE--CcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCE-EEEEeCCCCCCHHHH
Confidence 788 77655 222211 23478999999999999877777778899999999986 88999 89999999
Q ss_pred HHHHHHHHcC
Q psy3301 543 FVKLATMAAF 552 (608)
Q Consensus 543 F~~l~~~a~~ 552 (608)
|..|++.+..
T Consensus 179 ~~~l~~~i~~ 188 (200)
T 2o52_A 179 FLKCARTILN 188 (200)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998754
No 189
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.66 E-value=5.4e-17 Score=149.66 Aligned_cols=141 Identities=16% Similarity=0.214 Sum_probs=108.3
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCc-------eEecceEeCCcceeEeeeeccccc-----
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPP-------YTINTTTVYGQEKYLVLKEILVRD----- 474 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~-------~~i~~~~v~Gqe~~~~l~~~~~~~----- 474 (608)
...+||+|+|++|||||||+++|+++.+...+.++++.+..... +.+.-++++|+++|..++..+++.
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 34689999999999999999999999988877766655221122 233344559999988877776665
Q ss_pred -ccccCCCCcc--ccccc------ccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHH
Q psy3301 475 -EQLPVLLPVD--VDCDK------YFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVF 543 (608)
Q Consensus 475 -v~d~~l~~~~--~~~~~------~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F 543 (608)
+|| +++.+ ..++. ....+++|+++||||+|+.+.+++..+++.+++++++++ ++++| ++.|++++|
T Consensus 84 ~v~d--~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~gi~~l~ 160 (170)
T 1r2q_A 84 VVYD--ITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLL-FMETSAKTSMNVNEIF 160 (170)
T ss_dssp EEEE--TTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECCTTTCTTHHHHH
T ss_pred EEEE--CCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCe-EEEEeCCCCCCHHHHH
Confidence 788 76654 22221 123478999999999999877777778899999999985 88899 899999999
Q ss_pred HHHHHHH
Q psy3301 544 VKLATMA 550 (608)
Q Consensus 544 ~~l~~~a 550 (608)
..|++.+
T Consensus 161 ~~i~~~~ 167 (170)
T 1r2q_A 161 MAIAKKL 167 (170)
T ss_dssp HHHHHTS
T ss_pred HHHHHHH
Confidence 9998865
No 190
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.66 E-value=2.9e-16 Score=146.44 Aligned_cols=145 Identities=14% Similarity=0.101 Sum_probs=102.2
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCC-CCCCCCCCCcCCCceEe-------cceEeCCcceeEeeeeccccc----
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDS-SKTSITSPVECDPPYTI-------NTTTVYGQEKYLVLKEILVRD---- 474 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~-~~~~t~~~~~~~~~~~i-------~~~~v~Gqe~~~~l~~~~~~~---- 474 (608)
...+||+|+|++|||||||+++|+++.+.. .+.++.+.+.....+.+ .-++++|+++|..++..+++.
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~i 87 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHAL 87 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEE
Confidence 456999999999999999999999998853 45555555211122223 334559999999888877776
Q ss_pred --ccccCCCCcc--ccccc------ccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHH
Q psy3301 475 --EQLPVLLPVD--VDCDK------YFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREV 542 (608)
Q Consensus 475 --v~d~~l~~~~--~~~~~------~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~ 542 (608)
||| +++.. ..+.. .....++|+++|+||+|+.+.+++..+++.++++.++++ ++++| ++.|++++
T Consensus 88 i~v~d--~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l 164 (180)
T 2g6b_A 88 LLLYD--VTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLP-FMETSAKTGLNVDLA 164 (180)
T ss_dssp EEEEE--TTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCC-EEECCTTTCTTHHHH
T ss_pred EEEEE--CCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCe-EEEEeCCCCCCHHHH
Confidence 788 66654 22221 122378999999999999887777778899999999985 88999 89999999
Q ss_pred HHHHHHHHcCCC
Q psy3301 543 FVKLATMAAFPR 554 (608)
Q Consensus 543 F~~l~~~a~~p~ 554 (608)
|..|++.+...+
T Consensus 165 ~~~l~~~~~~~~ 176 (180)
T 2g6b_A 165 FTAIAKELKRRS 176 (180)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHHHh
Confidence 999999886543
No 191
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.66 E-value=1.1e-16 Score=147.61 Aligned_cols=141 Identities=17% Similarity=0.178 Sum_probs=102.1
Q ss_pred ceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceE-------ecceEeCCcceeEeeeeccccc------
Q psy3301 408 NVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYT-------INTTTVYGQEKYLVLKEILVRD------ 474 (608)
Q Consensus 408 ~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~-------i~~~~v~Gqe~~~~l~~~~~~~------ 474 (608)
+.+||+|+|++|||||||+++++++.+...+.++.+.+.....+. +.-++++|+++|..++..+++.
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 468999999999999999999999999877766665522112222 2333458999988887777666
Q ss_pred ccccCCCCcc--ccccc------ccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHH
Q psy3301 475 EQLPVLLPVD--VDCDK------YFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFV 544 (608)
Q Consensus 475 v~d~~l~~~~--~~~~~------~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~ 544 (608)
+|| +++.. ..+.. ....+++|+++|+||+|+. .+++..+++.+++++++++ ++++| ++.|++++|.
T Consensus 82 v~d--~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gv~~l~~ 157 (170)
T 1g16_A 82 VYD--ITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIP-FIESSAKNDDNVNEIFF 157 (170)
T ss_dssp EEE--TTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT-TCCSCHHHHHHHHHHHTCC-EEECBTTTTBSHHHHHH
T ss_pred EEE--CCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC-cCccCHHHHHHHHHHcCCe-EEEEECCCCCCHHHHHH
Confidence 788 66654 22221 1224689999999999994 4556678889999999985 89999 8999999999
Q ss_pred HHHHHHcC
Q psy3301 545 KLATMAAF 552 (608)
Q Consensus 545 ~l~~~a~~ 552 (608)
.|++.+..
T Consensus 158 ~l~~~~~~ 165 (170)
T 1g16_A 158 TLAKLIQE 165 (170)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998754
No 192
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.66 E-value=1e-16 Score=147.92 Aligned_cols=140 Identities=13% Similarity=0.156 Sum_probs=108.4
Q ss_pred ceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCce-------EecceEeCCcceeEeeeeccccc------
Q psy3301 408 NVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPY-------TINTTTVYGQEKYLVLKEILVRD------ 474 (608)
Q Consensus 408 ~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~-------~i~~~~v~Gqe~~~~l~~~~~~~------ 474 (608)
..+||+|+|++|||||||+++++++.+...+.++++.+.....+ .+.-++.+|+++|..++..+++.
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 84 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII 84 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEE
Confidence 45899999999999999999999999888777776652211222 23334558999888877776665
Q ss_pred ccccCCCCcc--cccc------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHH
Q psy3301 475 EQLPVLLPVD--VDCD------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFV 544 (608)
Q Consensus 475 v~d~~l~~~~--~~~~------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~ 544 (608)
+|| +++.. .... .....+.+|+++||||+|+.+.+++..+++.++++.++++ ++++| ++.|++++|.
T Consensus 85 v~d--~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~l~~ 161 (170)
T 1z0j_A 85 VYD--ITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAI-FVETSAKNAININELFI 161 (170)
T ss_dssp EEE--TTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECBTTTTBSHHHHHH
T ss_pred EEE--CcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCE-EEEEeCCCCcCHHHHHH
Confidence 778 66654 2222 2223578999999999999887778788899999999975 88899 8999999999
Q ss_pred HHHHHH
Q psy3301 545 KLATMA 550 (608)
Q Consensus 545 ~l~~~a 550 (608)
.|++.+
T Consensus 162 ~i~~~i 167 (170)
T 1z0j_A 162 EISRRI 167 (170)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 999876
No 193
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A 2fce_A
Probab=99.66 E-value=1.2e-17 Score=150.76 Aligned_cols=142 Identities=15% Similarity=0.163 Sum_probs=114.2
Q ss_pred HHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHH-HHhcCCCccCCCCcchhhHHHHHHHHHhcCCC
Q psy3301 175 KALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVI-RKNINDGVSANNCITLNGFLFLHNLFMQRGRS 253 (608)
Q Consensus 175 ~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~-~~~~~~~~~~~~~i~~~~F~~l~~~~~~~~~~ 253 (608)
+.++++|..+|.|++|.|+..|+..+++. +|..++..+++.++..+ +.+ ++|.|+|++|+.++....... +
T Consensus 4 ~~l~~~F~~~D~d~~G~i~~~el~~~l~~-~g~~~~~~~~~~l~~~~~D~~------~~g~i~~~eF~~~~~~~~~~~-~ 75 (148)
T 1m45_A 4 RANKDIFTLFDKKGQGAIAKDSLGDYLRA-IGYNPTNQLVQDIINADSSLR------DASSLTLDQITGLIEVNEKEL-D 75 (148)
T ss_dssp CCCTTCHHHHCTTCCSEEEGGGHHHHHHH-TTCCCCHHHHHHHHHC--CC--------CCEEEHHHHHHHHHHTHHHH-H
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHH-hCCCCCHHHHHHHHHHhhCCC------CCCeEcHHHHHHHHHHHHhhc-c
Confidence 34678899999999999999999999997 69999999999999998 887 799999999998775431000 0
Q ss_pred cchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCCCCCCCCC
Q psy3301 254 HTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPECPPWT 333 (608)
Q Consensus 254 e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~~~~~~~~ 333 (608)
+ ......+.++.+|+.||+|++|+|+.+||+.++..+|....+.+
T Consensus 76 ~-----------------------------------~~~~~~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~ 120 (148)
T 1m45_A 76 A-----------------------------------TTKAKTEDFVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAE 120 (148)
T ss_dssp G-----------------------------------GGCCCTHHHHHHHHTTCSSSSSEEEHHHHHHHHHHSTTCCCHHH
T ss_pred c-----------------------------------cccccHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHcCCCCCHHH
Confidence 0 00001356889999999999999999999999999985455556
Q ss_pred ccccccceecCCCCccchhhHHhHhh
Q psy3301 334 DREMRAMVATNSKGWITMQGFLCYWI 359 (608)
Q Consensus 334 ~~~~~~~~d~~~~g~i~~~ef~~~w~ 359 (608)
...+++.+|.|++|.|+|+||+..+.
T Consensus 121 ~~~~~~~~d~d~dg~i~~~eF~~~~~ 146 (148)
T 1m45_A 121 VDELLKGVEVDSNGEIDYKKFIEDVL 146 (148)
T ss_dssp HHHHHTTCCCCTTSEEEHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCeEeHHHHHHHHh
Confidence 78899999999999999999998764
No 194
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A
Probab=99.66 E-value=1.2e-16 Score=154.90 Aligned_cols=143 Identities=14% Similarity=0.120 Sum_probs=124.5
Q ss_pred cccccChHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHH
Q psy3301 164 SDKQELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFL 243 (608)
Q Consensus 164 ~~~~~l~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l 243 (608)
+....++++..+.++++|..+|.|++|.|+.+|+..+++. +|..++.++++.+++.++.+ ++|.|+|++|+.+
T Consensus 40 ~~~~~l~~~e~~~l~~~F~~~D~d~~G~I~~~El~~~l~~-~g~~~~~~~~~~l~~~~D~d------~dg~I~~~EF~~~ 112 (220)
T 3sjs_A 40 PLLNTIPLDQYTRIYQWFMGVDRDRSGTLEINELMMGQFP-GGIRLSPQTALRMMRIFDTD------FNGHISFYEFMAM 112 (220)
T ss_dssp GGGGGCCHHHHHHHHHHHHHHCTTCCSSBCHHHHHHCCBG-GGBCCCHHHHHHHHHHHCTT------CSSCBCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH-cCCCCCHHHHHHHHHHhCCC------CCCcCCHHHHHHH
Confidence 3445688999999999999999999999999999999987 69999999999999999988 8999999999977
Q ss_pred HHHHHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhc
Q psy3301 244 HNLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFS 323 (608)
Q Consensus 244 ~~~~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~ 323 (608)
+.. .+.++.+|+.||+|++|+|+.+||+.+++
T Consensus 113 ~~~------------------------------------------------~~~l~~~F~~~D~d~~G~I~~~El~~~l~ 144 (220)
T 3sjs_A 113 YKF------------------------------------------------MELAYNLFVMNARARSGTLEPHEILPALQ 144 (220)
T ss_dssp HHH------------------------------------------------HHHHHHHHHHHCCSSTTEECHHHHHHHHH
T ss_pred HHH------------------------------------------------HHHHHHHHHHHCCCCCCCCcHHHHHHHHH
Confidence 642 24588899999999999999999999999
Q ss_pred cCCCCCCCCCccccccceecCCCCccchhhHHhHhhhhh
Q psy3301 324 LCPPECPPWTDREMRAMVATNSKGWITMQGFLCYWILTT 362 (608)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~~~ 362 (608)
.+|....+.+...+++.+| |++|.|+|+||++.+....
T Consensus 145 ~~g~~~~~~~~~~l~~~~d-d~dg~I~~~eF~~~~~~l~ 182 (220)
T 3sjs_A 145 QLGFYINQRTSLLLHRLFA-RGMAFCDLNCWIAICAFAA 182 (220)
T ss_dssp HHTCCCCHHHHHHHHHHHC---CCSEEHHHHHHHHHHHH
T ss_pred HhCCCCCHHHHHHHHHHhc-CCCCcCcHHHHHHHHHHHH
Confidence 9885555566788999999 9999999999999886653
No 195
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.66 E-value=9.3e-17 Score=151.50 Aligned_cols=143 Identities=19% Similarity=0.223 Sum_probs=106.4
Q ss_pred CCCceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEe-------cceEeCCcceeE-eeeeccccc--
Q psy3301 405 TTRNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTI-------NTTTVYGQEKYL-VLKEILVRD-- 474 (608)
Q Consensus 405 ~~r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i-------~~~~v~Gqe~~~-~l~~~~~~~-- 474 (608)
.....+||+|+|++|||||||+++|+++.+...+.++.+.+.....+.+ .-++++|+++|. .++..+++.
T Consensus 16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d 95 (189)
T 1z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH 95 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence 3446799999999999999999999999998877777665222223333 334458999887 666666665
Q ss_pred ----ccccCCCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cC---
Q psy3301 475 ----EQLPVLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AA--- 536 (608)
Q Consensus 475 ----v~d~~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~--- 536 (608)
||| +++.. ..+. ++....++|+++|+||+|+.+.+++..+++.++++.++++ ++++| ++
T Consensus 96 ~iilv~D--~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~~ 172 (189)
T 1z06_A 96 AVVFVYD--MTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMP-LFETSAKNPNDN 172 (189)
T ss_dssp EEEEEEE--TTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCC-EEECCSSSGGGG
T ss_pred EEEEEEE--CcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCE-EEEEeCCcCCcc
Confidence 788 66644 2221 3333578999999999999887778888899999999985 88999 77
Q ss_pred CCHHHHHHHHHHHH
Q psy3301 537 NNDREVFVKLATMA 550 (608)
Q Consensus 537 ~~v~e~F~~l~~~a 550 (608)
.|++++|..|++.+
T Consensus 173 ~~i~~l~~~l~~~i 186 (189)
T 1z06_A 173 DHVEAIFMTLAHKL 186 (189)
T ss_dssp SCHHHHHHHHC---
T ss_pred cCHHHHHHHHHHHH
Confidence 99999999998765
No 196
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=99.66 E-value=8.3e-17 Score=146.20 Aligned_cols=143 Identities=14% Similarity=0.162 Sum_probs=118.9
Q ss_pred ccccChHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHH
Q psy3301 165 DKQELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLH 244 (608)
Q Consensus 165 ~~~~l~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~ 244 (608)
+...++++....++++|..+|.|++|.|+..|+..+++. +|..++..++..++..+ +|.|+|++|+.++
T Consensus 6 ~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~-~g~~~~~~~~~~~~~~~----------~g~i~~~eF~~~~ 74 (153)
T 2ovk_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSS-LGRVPPDDELNAMLKEC----------PGQLNFTAFLTLF 74 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTTCCCHHHHHHHTTT-TTSCCCHHHHHHHHHHS----------SSCCCSHHHHHTT
T ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHH-hCCCCCHHHHHHHHHHc----------CCCCCHHHHHHHH
Confidence 456788899999999999999999999999999999987 79999999988888764 6799999999664
Q ss_pred HHHHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhcc
Q psy3301 245 NLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSL 324 (608)
Q Consensus 245 ~~~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~ 324 (608)
....... ...+.++.+|+.||+|++|+|+.+||+.++..
T Consensus 75 ~~~~~~~-----------------------------------------~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~ 113 (153)
T 2ovk_B 75 GEKVSGT-----------------------------------------DPEDALRNAFSMFDEDGQGFIPEDYLKDLLEN 113 (153)
T ss_dssp TTTTTTC-----------------------------------------CCTTHHHHHHHTTCSSCSSCCCHHHHHHHHHH
T ss_pred HHHhccC-----------------------------------------ChHHHHHHHHHHHCCCCCCeEcHHHHHHHHHH
Confidence 3211000 00246888999999999999999999999999
Q ss_pred CCCCCCCCCccccccceecCCCCccchhhHHhHhhh
Q psy3301 325 CPPECPPWTDREMRAMVATNSKGWITMQGFLCYWIL 360 (608)
Q Consensus 325 ~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~ 360 (608)
+|....+.+...+++.+|. ++|.|+|+||+..+.-
T Consensus 114 ~g~~~~~~~~~~~~~~~d~-~dg~I~~~eF~~~~~~ 148 (153)
T 2ovk_B 114 MGDNFSKEEIKNVWKDAPL-KNKQFNYNKMVDIKGK 148 (153)
T ss_dssp SSSCCCHHHHHHHHHHCCE-ETTEECHHHHHHHHHC
T ss_pred cCCCCCHHHHHHHHHHcCC-CCCEEeHHHHHHHHhc
Confidence 9855555667889999999 9999999999988753
No 197
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.66 E-value=4e-17 Score=155.55 Aligned_cols=147 Identities=16% Similarity=0.202 Sum_probs=104.0
Q ss_pred CCCceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEec-------ceEeCCcceeEeeeeccccc---
Q psy3301 405 TTRNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTIN-------TTTVYGQEKYLVLKEILVRD--- 474 (608)
Q Consensus 405 ~~r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~-------~~~v~Gqe~~~~l~~~~~~~--- 474 (608)
.....+||+|+|++|||||||+++|+++.+...+.+|.+. .+...+.++ -++++|+++|..++..++++
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFD-NFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI 94 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSE-EEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccc-eeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence 3456799999999999999999999999988877766654 222233333 34559999999888887776
Q ss_pred ---ccccCCCCcc--cccc-ccc-----CCCCCcEEEEEeCCCCCcc------------hhcccccHHHHHHHcCCCCce
Q psy3301 475 ---EQLPVLLPVD--VDCD-KYF-----STSKIPVMLVAGKSDMPRA------------RQDYLMQPDIFCETHKLSPAH 531 (608)
Q Consensus 475 ---v~d~~l~~~~--~~~~-~~~-----~~~~~p~ilVgnK~DL~~~------------~~~~~~~~~~~~~~~~~~~~~ 531 (608)
||| +++.+ ..+. .|. ..+++|+++||||+||... +.+..+++.++++.+++.+++
T Consensus 95 ~i~v~d--~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 172 (201)
T 2q3h_A 95 FLLCFS--VVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYI 172 (201)
T ss_dssp EEEEEE--TTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred EEEEEE--CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEE
Confidence 788 77665 2221 121 1358999999999999752 456677899999999985589
Q ss_pred EEc--cCCCHHHHHHHHHHHHcCCC
Q psy3301 532 SFS--AANNDREVFVKLATMAAFPR 554 (608)
Q Consensus 532 ~~S--~~~~v~e~F~~l~~~a~~p~ 554 (608)
++| ++.|++++|..|++.+..+.
T Consensus 173 ~~Sa~~g~gi~~l~~~l~~~~~~~~ 197 (201)
T 2q3h_A 173 ECSALTQKNLKEVFDAAIVAGIQYS 197 (201)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCCHHHHHHHHHHHHhccc
Confidence 999 89999999999999887654
No 198
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.66 E-value=1.2e-16 Score=152.72 Aligned_cols=144 Identities=17% Similarity=0.216 Sum_probs=111.3
Q ss_pred CCCceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEe-------cceEeCCcceeEeeeeccccc---
Q psy3301 405 TTRNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTI-------NTTTVYGQEKYLVLKEILVRD--- 474 (608)
Q Consensus 405 ~~r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i-------~~~~v~Gqe~~~~l~~~~~~~--- 474 (608)
.....+||+|+|++|||||||+++|+++.+...+.+|.+. .+...+.+ .-++++|+++|..++..+++.
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 88 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKAD-SYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 88 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCE-EEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccce-EEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCE
Confidence 3456799999999999999999999999988877766654 22222333 334459999988887776665
Q ss_pred ---ccccCCCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHH
Q psy3301 475 ---EQLPVLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDR 540 (608)
Q Consensus 475 ---v~d~~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~ 540 (608)
+|| +++.+ .... .+....++|+++|+||+|+.+.+++..+++.++++.++++ ++++| ++.|++
T Consensus 89 ~i~v~d--~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~gi~ 165 (206)
T 2bov_A 89 FLCVFS--ITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVN-YVETSAKTRANVD 165 (206)
T ss_dssp EEEEEE--TTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEEECTTTCTTHH
T ss_pred EEEEEE--CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCe-EEEEeCCCCCCHH
Confidence 788 77654 2222 2233468999999999999887778788899999999985 88999 899999
Q ss_pred HHHHHHHHHHcC
Q psy3301 541 EVFVKLATMAAF 552 (608)
Q Consensus 541 e~F~~l~~~a~~ 552 (608)
++|..|++.+..
T Consensus 166 ~l~~~l~~~i~~ 177 (206)
T 2bov_A 166 KVFFDLMREIRA 177 (206)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998754
No 199
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.66 E-value=3.7e-17 Score=153.65 Aligned_cols=143 Identities=15% Similarity=0.089 Sum_probs=108.2
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCC-------CceEecceEeCCcceeEeeeeccccc-----
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECD-------PPYTINTTTVYGQEKYLVLKEILVRD----- 474 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~-------~~~~i~~~~v~Gqe~~~~l~~~~~~~----- 474 (608)
...+||+|+|++|||||||+++|+++.+...+.+|.+. .+. ..+.+.-++++|+++|..++..+++.
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFE-NYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE-EEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccce-eEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 45689999999999999999999999998777766654 221 12334445569999998888877766
Q ss_pred -ccccCCCCcc--ccc-cccc-----CCCCCcEEEEEeCCCCCcc------------hhcccccHHHHHHHcCCCCceEE
Q psy3301 475 -EQLPVLLPVD--VDC-DKYF-----STSKIPVMLVAGKSDMPRA------------RQDYLMQPDIFCETHKLSPAHSF 533 (608)
Q Consensus 475 -v~d~~l~~~~--~~~-~~~~-----~~~~~p~ilVgnK~DL~~~------------~~~~~~~~~~~~~~~~~~~~~~~ 533 (608)
+|| +++.+ ..+ ..|. ..+++|+++||||+|+.+. +++..+++.+++++++..+++++
T Consensus 84 ~v~d--~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 161 (184)
T 1m7b_A 84 ICFD--ISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 161 (184)
T ss_dssp EEEE--TTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEE--CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEe
Confidence 788 77655 332 2121 1368999999999999742 55667889999999985558899
Q ss_pred c--c-CCCHHHHHHHHHHHHcC
Q psy3301 534 S--A-ANNDREVFVKLATMAAF 552 (608)
Q Consensus 534 S--~-~~~v~e~F~~l~~~a~~ 552 (608)
| + +.|++++|..|++.++.
T Consensus 162 Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 162 SALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp BTTTBHHHHHHHHHHHHHHHHT
T ss_pred eecCCCcCHHHHHHHHHHHHhc
Confidence 9 3 57999999999998753
No 200
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.66 E-value=1.2e-16 Score=149.15 Aligned_cols=143 Identities=17% Similarity=0.169 Sum_probs=109.8
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCce-------EecceEeCCcceeEeeeeccccc-----
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPY-------TINTTTVYGQEKYLVLKEILVRD----- 474 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~-------~i~~~~v~Gqe~~~~l~~~~~~~----- 474 (608)
...+||+|+|++|||||||+++++++.+...+.++++.+.....+ .+.-++++|+++|..++..+++.
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 89 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 89 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEE
Confidence 456999999999999999999999999988776666652222222 23334559999998887777765
Q ss_pred -ccccCCCCcc--cccc------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHH
Q psy3301 475 -EQLPVLLPVD--VDCD------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVF 543 (608)
Q Consensus 475 -v~d~~l~~~~--~~~~------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F 543 (608)
||| +++.. +.+. .....+++|+++|+||+|+.+.+++..+++.+++++++++ ++++| ++.|++++|
T Consensus 90 ~v~d--~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~gi~~l~ 166 (181)
T 2efe_B 90 IVFD--VTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLF-FMETSAKTATNVKEIF 166 (181)
T ss_dssp EEEE--TTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCE-EEECCSSSCTTHHHHH
T ss_pred EEEE--CCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCE-EEEEECCCCCCHHHHH
Confidence 788 66654 2222 1122468999999999999877777788899999999986 88899 899999999
Q ss_pred HHHHHHHcC
Q psy3301 544 VKLATMAAF 552 (608)
Q Consensus 544 ~~l~~~a~~ 552 (608)
..|++.+..
T Consensus 167 ~~l~~~~~~ 175 (181)
T 2efe_B 167 YEIARRLPR 175 (181)
T ss_dssp HHHHHTCC-
T ss_pred HHHHHHHHh
Confidence 999987644
No 201
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.66 E-value=8.3e-17 Score=150.11 Aligned_cols=144 Identities=19% Similarity=0.211 Sum_probs=112.2
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEec-------ceEeCCcceeEeeeeccccc-----
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTIN-------TTTVYGQEKYLVLKEILVRD----- 474 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~-------~~~v~Gqe~~~~l~~~~~~~----- 474 (608)
...+||+|+|++|||||||+++|+++.+...+.+|.+. .+...+.++ -++++|+++|..++..+++.
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 85 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIED-SYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL 85 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCE-EEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCc-eEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE
Confidence 45689999999999999999999999998887766655 222223333 34559999998887777665
Q ss_pred -ccccCCCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHH
Q psy3301 475 -EQLPVLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREV 542 (608)
Q Consensus 475 -v~d~~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~ 542 (608)
||| +++.+ ..+. +.....++|+++|+||+|+.+.+++..+++.++++.++++ ++++| ++.|++++
T Consensus 86 ~v~d--~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~gv~~l 162 (181)
T 2fn4_A 86 LVFA--INDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVA-YFEASAKLRLNVDEA 162 (181)
T ss_dssp EEEE--TTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECBTTTTBSHHHH
T ss_pred EEEe--CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCe-EEEecCCCCCCHHHH
Confidence 788 77654 2222 2233568999999999999887888788899999999985 88899 89999999
Q ss_pred HHHHHHHHcCCC
Q psy3301 543 FVKLATMAAFPR 554 (608)
Q Consensus 543 F~~l~~~a~~p~ 554 (608)
|..|++.+...+
T Consensus 163 ~~~l~~~~~~~~ 174 (181)
T 2fn4_A 163 FEQLVRAVRKYQ 174 (181)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh
Confidence 999999886543
No 202
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.66 E-value=1e-16 Score=147.65 Aligned_cols=142 Identities=18% Similarity=0.120 Sum_probs=108.9
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEec-------ceEeCCcceeEeeeeccccc-----
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTIN-------TTTVYGQEKYLVLKEILVRD----- 474 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~-------~~~v~Gqe~~~~l~~~~~~~----- 474 (608)
+..+||+|+|++|||||||+++++++.+...+.++.+.+.+...+.++ -++.+|+++|..++..+++.
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 356999999999999999999999999988877776652222333333 23448999988887777665
Q ss_pred -ccccCCCCcc--cccccccC-----CCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHH
Q psy3301 475 -EQLPVLLPVD--VDCDKYFS-----TSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFV 544 (608)
Q Consensus 475 -v~d~~l~~~~--~~~~~~~~-----~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~ 544 (608)
+|| +++.+ +.+..+.. .+++|+++|+||+|+.+.+++..+++.+++++++++ ++++| ++.|++++|.
T Consensus 83 ~v~d--~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~l~~ 159 (168)
T 1z2a_A 83 LVFS--TTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLR-FYRTSVKEDLNVSEVFK 159 (168)
T ss_dssp EEEE--TTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCE-EEECBTTTTBSSHHHHH
T ss_pred EEEE--CcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCe-EEEEecCCCCCHHHHHH
Confidence 777 66654 22221111 168999999999999887777788899999999985 88999 8999999999
Q ss_pred HHHHHHc
Q psy3301 545 KLATMAA 551 (608)
Q Consensus 545 ~l~~~a~ 551 (608)
.|++.+.
T Consensus 160 ~l~~~~~ 166 (168)
T 1z2a_A 160 YLAEKHL 166 (168)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998774
No 203
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.66 E-value=1e-16 Score=155.62 Aligned_cols=145 Identities=17% Similarity=0.212 Sum_probs=106.4
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecc-------eEeCCcceeEeeeeccccc-----
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINT-------TTVYGQEKYLVLKEILVRD----- 474 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~-------~~v~Gqe~~~~l~~~~~~~----- 474 (608)
...+||+|+|++|||||||+++|+++.+...+.++.+.+.....+.+++ ++++|+++|..++..+++.
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 5679999999999999999999999999888777776522223333333 3449999999888888776
Q ss_pred -ccccCCCCcc--ccccc------ccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHH
Q psy3301 475 -EQLPVLLPVD--VDCDK------YFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVF 543 (608)
Q Consensus 475 -v~d~~l~~~~--~~~~~------~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F 543 (608)
||| +++.. ..+.. .....++|++||+||+||.+.+++..+++.++++.++++ ++++| ++.|++++|
T Consensus 91 lV~D--~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l~ 167 (223)
T 3cpj_B 91 IVYD--ISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLL-FTETSALNSENVDKAF 167 (223)
T ss_dssp EEEC---CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCE-EEECCCC-CCCHHHHH
T ss_pred EEEe--CCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEeCCCCCCHHHHH
Confidence 788 77655 22221 122468999999999999887778778899999999985 88899 899999999
Q ss_pred HHHHHHHcCCC
Q psy3301 544 VKLATMAAFPR 554 (608)
Q Consensus 544 ~~l~~~a~~p~ 554 (608)
..|++.+....
T Consensus 168 ~~l~~~i~~~~ 178 (223)
T 3cpj_B 168 EELINTIYQKV 178 (223)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHHHHh
Confidence 99999886654
No 204
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8
Probab=99.66 E-value=2.3e-16 Score=149.37 Aligned_cols=148 Identities=20% Similarity=0.255 Sum_probs=123.8
Q ss_pred CCCCccccccccChHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcc
Q psy3301 157 PMAPIYISDKQELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCIT 236 (608)
Q Consensus 157 ~~~~l~~~~~~~l~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~ 236 (608)
|..+...+...++.+ .+.++++|..+|.|++|.|+.+|+..++.. +|.++++++++.++..++.+ ++|.|+
T Consensus 11 ~~~~~~~~~~~~~~~--~~~l~~~F~~~D~d~~G~I~~~El~~~l~~-~~~~~~~~~~~~l~~~~D~d------~dG~I~ 81 (191)
T 1y1x_A 11 TSTGVYAPSARHMND--NQELMEWFRAVDTDGSGAISVPELNAALSS-AGVPFSLATTEKLLHMYDKN------HSGEIT 81 (191)
T ss_dssp CSCCTTSTTCCSSCT--TSCHHHHHHHHCTTCSSSBCHHHHHHHHCB-TTBCCCHHHHHHHHHHHCTT------CSSSBC
T ss_pred CcccccCCcccccCC--HHHHHHHHHHHcCCCCCcCcHHHHHHHHHH-cCCCCCHHHHHHHHHHhCCC------CCCeEc
Confidence 333333444445544 467999999999999999999999999964 78899999999999999988 899999
Q ss_pred hhhHHHHHHHHHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHH
Q psy3301 237 LNGFLFLHNLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPE 316 (608)
Q Consensus 237 ~~~F~~l~~~~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~ 316 (608)
|++|+.++.. .+.++.+|+.||+|++|.|+.+
T Consensus 82 ~~EF~~~~~~------------------------------------------------~~~~~~~F~~~D~d~~G~i~~~ 113 (191)
T 1y1x_A 82 FDEFKDLHHF------------------------------------------------ILSMREGFRKRDSSGDGRLDSN 113 (191)
T ss_dssp HHHHHHHHHH------------------------------------------------HHHHHHHHHHHCTTSSSCBCHH
T ss_pred HHHHHHHHHH------------------------------------------------HHHHHHHHHHhCCCCCCeEcHH
Confidence 9999977532 2457889999999999999999
Q ss_pred HHHHhhccCCCCCCCCCccccccceecCCCCccchhhHHhHhhhh
Q psy3301 317 EQARLFSLCPPECPPWTDREMRAMVATNSKGWITMQGFLCYWILT 361 (608)
Q Consensus 317 El~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~~ 361 (608)
|++.++...|....+.+...+++.+|.|++|.|+|+||+..+.-.
T Consensus 114 e~~~~l~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~~~ 158 (191)
T 1y1x_A 114 EVRAALLSSGYQVSEQTFQALMRKFDRQRRGSLGFDDYVELSIFV 158 (191)
T ss_dssp HHHHHHHTTSCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHH
Confidence 999999998744444557888999999999999999999998753
No 205
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Probab=99.65 E-value=3.3e-17 Score=149.28 Aligned_cols=145 Identities=16% Similarity=0.208 Sum_probs=121.6
Q ss_pred cChHHHHHHHHHHHHhccC--CCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHH
Q psy3301 168 ELTPECIKALTRIFKVCDL--DNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHN 245 (608)
Q Consensus 168 ~l~~~~~~~L~~~f~~~D~--d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~ 245 (608)
.++++.+..++++|..+|. |++|.|+..|+..+++. +|..++..++..+ ..++.+ ++|.|+|++|+.++.
T Consensus 2 ~ls~~~~~~l~~~F~~~D~~~d~~G~i~~~el~~~l~~-~g~~~~~~~~~~l-~~~D~~------~~g~i~~~eF~~~~~ 73 (156)
T 1wdc_C 2 KLSQDEIDDLKDVFELFDFWDGRDGAVDAFKLGDVCRC-LGINPRNEDVFAV-GGTHKM------GEKSLPFEEFLPAYE 73 (156)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTCSSSCEEGGGHHHHHHH-TTCCCCHHHHHHT-TCCSST------TSCEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHccCCCCCCCCcHHHHHHHHHH-cCCCCCHHHHHHH-HhhCCC------CCCeeeHHHHHHHHH
Confidence 3677889999999999999 99999999999999987 7989999998888 777666 789999999998775
Q ss_pred HHHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccC
Q psy3301 246 LFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLC 325 (608)
Q Consensus 246 ~~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~ 325 (608)
..... . ....+.++.+|+.||+|++|+|+.+||+.++..+
T Consensus 74 ~~~~~--~--------------------------------------~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~ 113 (156)
T 1wdc_C 74 GLMDC--E--------------------------------------QGTFADYMEAFKTFDREGQGFISGAELRHVLTAL 113 (156)
T ss_dssp HHTTS--C--------------------------------------CCCHHHHHHHHHTTCSSSSSEEEHHHHHHHHHHS
T ss_pred HHhhc--c--------------------------------------CChHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHc
Confidence 43211 0 0114678899999999999999999999999998
Q ss_pred CCCCCCCCccccccc--eecCCCCccchhhHHhHhhh
Q psy3301 326 PPECPPWTDREMRAM--VATNSKGWITMQGFLCYWIL 360 (608)
Q Consensus 326 ~~~~~~~~~~~~~~~--~d~~~~g~i~~~ef~~~w~~ 360 (608)
|....+.+...+++. +|.|++|.|+|+||+..+.-
T Consensus 114 g~~~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~~ 150 (156)
T 1wdc_C 114 GERLSDEDVDEIIKLTDLQEDLEGNVKYEDFVKKVMA 150 (156)
T ss_dssp SSCCCHHHHHHHHHHHTCCCCTTSEEEHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCCcEeHHHHHHHHhc
Confidence 754455557888999 99999999999999988754
No 206
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.65 E-value=6.3e-17 Score=148.61 Aligned_cols=138 Identities=17% Similarity=0.229 Sum_probs=106.9
Q ss_pred eEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEe-------cceEeCCcceeEeeeeccccc------c
Q psy3301 409 VYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTI-------NTTTVYGQEKYLVLKEILVRD------E 475 (608)
Q Consensus 409 ~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i-------~~~~v~Gqe~~~~l~~~~~~~------v 475 (608)
.+||+|+|++|||||||+++++++.+...+.++.+. .+...+.+ .-++++|+++|..++..+++. +
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIED-FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcce-eEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 489999999999999999999999988777666544 22222333 334458999988877776665 7
Q ss_pred cccCCCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHH
Q psy3301 476 QLPVLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFV 544 (608)
Q Consensus 476 ~d~~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~ 544 (608)
|| +++.+ .... +.....++|+++|+||+|+.+.+++..+++.+++++++++ ++++| ++.|++++|.
T Consensus 82 ~d--~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l~~ 158 (167)
T 1kao_A 82 YS--LVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCP-FMETSAKSKTMVDELFA 158 (167)
T ss_dssp EE--TTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSC-EEEECTTCHHHHHHHHH
T ss_pred Ee--CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCC-EEEecCCCCcCHHHHHH
Confidence 77 66644 1121 2333468999999999999887788788899999999986 89999 8999999999
Q ss_pred HHHHHH
Q psy3301 545 KLATMA 550 (608)
Q Consensus 545 ~l~~~a 550 (608)
.|++.+
T Consensus 159 ~l~~~~ 164 (167)
T 1kao_A 159 EIVRQM 164 (167)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999865
No 207
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=99.65 E-value=1.7e-16 Score=144.66 Aligned_cols=140 Identities=15% Similarity=0.176 Sum_probs=116.9
Q ss_pred ccChHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHH
Q psy3301 167 QELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNL 246 (608)
Q Consensus 167 ~~l~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~ 246 (608)
..++++....++++|..+|.|++|.|+.+|+..+++. +|..++..++..++. + ++|.|+|++|+.++..
T Consensus 10 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~-~g~~~~~~~~~~~~~----~------~~g~i~~~eF~~~~~~ 78 (156)
T 1wdc_B 10 TKLPQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQ-LGRAPDDKELTAMLK----E------APGPLNFTMFLSIFSD 78 (156)
T ss_dssp --CCHHHHHHHHHHHHHHCTTCSSSCCHHHHHHHHHH-HSSCCCHHHHHHHHT----T------SSSCCCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH-hCCCCCHHHHHHHHH----h------CCCcCcHHHHHHHHHH
Confidence 4577888999999999999999999999999999997 699999988887774 2 4899999999987654
Q ss_pred HHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCC
Q psy3301 247 FMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCP 326 (608)
Q Consensus 247 ~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~ 326 (608)
...... ..+.++.+|+.||+|++|+|+.+||+.++..+|
T Consensus 79 ~~~~~~-----------------------------------------~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g 117 (156)
T 1wdc_B 79 KLSGTD-----------------------------------------SEETIRNAFAMFDEQETKKLNIEYIKDLLENMG 117 (156)
T ss_dssp HTCSCC-----------------------------------------CHHHHHHHHHTTCTTCCSCEEHHHHHHHHHHSS
T ss_pred HhcCCC-----------------------------------------hHHHHHHHHHHHCcCCCCccCHHHHHHHHHHhC
Confidence 321100 135688999999999999999999999999987
Q ss_pred CCCCCCCccccccceecCCCCccchhhHHhHhh
Q psy3301 327 PECPPWTDREMRAMVATNSKGWITMQGFLCYWI 359 (608)
Q Consensus 327 ~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~ 359 (608)
....+.++..+++.+|.| +|.|+|+||+..+.
T Consensus 118 ~~~~~~~~~~~~~~~d~~-dg~i~~~eF~~~~~ 149 (156)
T 1wdc_B 118 DNFNKDEMRMTFKEAPVE-GGKFDYVKFTAMIK 149 (156)
T ss_dssp SCCCHHHHHHHHHHCCEE-TTEECHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCC-CCEEeHHHHHHHHh
Confidence 555556678899999999 99999999998764
No 208
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.65 E-value=1.9e-16 Score=149.70 Aligned_cols=118 Identities=16% Similarity=0.215 Sum_probs=86.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHh----cCc
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQK----AHV 83 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~----ad~ 83 (608)
...++|+|+|++|||||||+++|++..+........ .++.. ....+.+.+|||||++.+...+..+++. +|+
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~--~~~~~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 121 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE--PLSAA--DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKG 121 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC----------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCC--Cceee--eecCCeEEEEECCCCchHHHHHHHHHHhhcccCCE
Confidence 457899999999999999999999988654211111 11111 2245678999999999987777777776 899
Q ss_pred EEEEEEcC-ChhhHHHHHHhHHHHHhhhc---cCCCCcEEEEEeCcCCCCC
Q psy3301 84 ICLVYSVV-DDASIDRLSSHWLPFLRNCL---VDTCLPIVLVGNKVDLVDY 130 (608)
Q Consensus 84 iilV~d~~-~~~s~~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~ 130 (608)
+++|||++ +..++..+. .|+..+.... ...++|+++|+||+|+...
T Consensus 122 ~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 122 LIFMVDSTVDPKKLTTTA-EFLVDILSITESSCENGIDILIACNKSELFTA 171 (193)
T ss_dssp EEEEEETTCCHHHHHHHH-HHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred EEEEEECCCCchhHHHHH-HHHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence 99999999 899999888 5555443211 3468999999999998643
No 209
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma lanceolatum} SCOP: a.39.1.5
Probab=99.65 E-value=6.5e-16 Score=144.53 Aligned_cols=150 Identities=16% Similarity=0.211 Sum_probs=122.6
Q ss_pred ChHHHHHHHHHHHHhc-cCCCCCccCHHHHHHHhhcccC----CCCChhhHHHH-----------HHHHHHhcCCCccCC
Q psy3301 169 LTPECIKALTRIFKVC-DLDNDNLLSDKELNAFQRRCFD----APLSRDSLEDV-----------KIVIRKNINDGVSAN 232 (608)
Q Consensus 169 l~~~~~~~L~~~f~~~-D~d~dg~l~~~El~~~~~~~~g----~~~~~~el~~i-----------~~~~~~~~~~~~~~~ 232 (608)
+++...+.++++|..+ |.|+||.|+.+|+..+++. ++ ..++..+++.+ +..++.+ ++
T Consensus 2 ls~~~~~~l~~~F~~~~D~d~dG~i~~~E~~~~l~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~f~~~D~d------~d 74 (185)
T 2sas_A 2 LNDFQKQKIKFTFDFFLDMNHDGSIQDNDFEDMMTR-YKEVNKGSLSDADYKSMQASLEDEWRDLKGRADIN------KD 74 (185)
T ss_dssp CCHHHHHHHHHHHHHHTCTTCSSEECHHHHHHHHHH-HHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHCTT------CS
T ss_pred cCHHHHHHHHHHHHHheeCCCCCeEcHHHHHHHHHH-HHHhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCCC------CC
Confidence 4567788999999999 9999999999999999886 45 78888888766 6777777 79
Q ss_pred CCcchhhHHHHHHHHHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCC
Q psy3301 233 NCITLNGFLFLHNLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGA 312 (608)
Q Consensus 233 ~~i~~~~F~~l~~~~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ 312 (608)
|.|++++|+.++.......... ........+.++.+|+.||+|+||.
T Consensus 75 G~I~~~Ef~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~F~~~D~d~dG~ 121 (185)
T 2sas_A 75 DVVSWEEYLAMWEKTIATCKSV---------------------------------ADLPAWCQNRIPFLFKGMDVSGDGI 121 (185)
T ss_dssp SCEEHHHHHHHHHHHHHTCCSG---------------------------------GGSCTTHHHHHHHHHHHHCTTSSSC
T ss_pred CeEcHHHHHHHHHHHhccccch---------------------------------hhhhHHHHHHHHHHHHHHcCCCCCe
Confidence 9999999998876543321000 1112223577999999999999999
Q ss_pred CCHHHHHHhhccCCCCCCCCCccccccceecCCCCccchhhHHhHhhh
Q psy3301 313 LSPEEQARLFSLCPPECPPWTDREMRAMVATNSKGWITMQGFLCYWIL 360 (608)
Q Consensus 313 ls~~El~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~ 360 (608)
|+.+|++.+++..| ..+.++..+++.+|.|++|.|+|+||+..+.-
T Consensus 122 Is~~E~~~~l~~~g--~~~~~~~~~~~~~D~d~dG~i~~~ef~~~~~~ 167 (185)
T 2sas_A 122 VDLEEFQNYCKNFQ--LQCADVPAVYNVITDGGKVTFDLNRYKELYYR 167 (185)
T ss_dssp CCHHHHHHHTTSSC--CCCSSHHHHHHHHHTTTTSCCSHHHHHHHHHH
T ss_pred EcHHHHHHHHHHhC--CCHHHHHHHHHHhcCCCCCcCcHHHHHHHHHH
Confidence 99999999999988 66777899999999999999999999988754
No 210
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.65 E-value=4.2e-17 Score=151.92 Aligned_cols=145 Identities=17% Similarity=0.144 Sum_probs=109.9
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCce--------EecceEeCCcceeEeeeeccccc----
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPY--------TINTTTVYGQEKYLVLKEILVRD---- 474 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~--------~i~~~~v~Gqe~~~~l~~~~~~~---- 474 (608)
...+||+|+|++|||||||+++|+++.+...+.+|.+.+.+...+ .+.-++++|+++|..++..+++.
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 83 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV 83 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence 346999999999999999999999999876666666642222323 33344559999998888877766
Q ss_pred --ccccCCCCcc--cccccccC--------CCCCc-EEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCH
Q psy3301 475 --EQLPVLLPVD--VDCDKYFS--------TSKIP-VMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANND 539 (608)
Q Consensus 475 --v~d~~l~~~~--~~~~~~~~--------~~~~p-~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v 539 (608)
||| +++.+ ..+..|.. ..+.| +++||||+||.+.+++..+++.+++++++++ ++++| ++.|+
T Consensus 84 i~v~d--~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi 160 (178)
T 2hxs_A 84 LLVYD--ITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFS-SHFVSAKTGDSV 160 (178)
T ss_dssp EEEEE--TTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCE-EEEECTTTCTTH
T ss_pred EEEEE--CCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCc-EEEEeCCCCCCH
Confidence 788 77655 22221110 12445 8999999999887777788899999999986 88999 89999
Q ss_pred HHHHHHHHHHHcCCC
Q psy3301 540 REVFVKLATMAAFPR 554 (608)
Q Consensus 540 ~e~F~~l~~~a~~p~ 554 (608)
+++|..|++.+....
T Consensus 161 ~~l~~~l~~~~~~~~ 175 (178)
T 2hxs_A 161 FLCFQKVAAEILGIK 175 (178)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999886544
No 211
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.65 E-value=2.4e-17 Score=178.49 Aligned_cols=143 Identities=18% Similarity=0.128 Sum_probs=108.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCC-CceeEEEEeCCCCCCChHHHHHHHHhcCcEEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTP-EMVPTHIVDYSEVDQTVDELTEEIQKAHVICL 86 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iil 86 (608)
++..+|+++|++|+|||||+++|.+..+.....+..+.......+.. .+..+.||||||++.|...+..+++.+|++++
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 35678999999999999999999987765543333222222222222 45578999999999999888888999999999
Q ss_pred EEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------------cccCcccCcCH
Q psy3301 87 VYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------------VESSAKTLKNI 143 (608)
Q Consensus 87 V~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------------~e~SAk~~~~i 143 (608)
|+|+++....+... .| ..+. ..++|+++|+||+|+..... +++||++|.|+
T Consensus 82 VVDa~dg~~~qt~e-~l-~~~~----~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI 155 (537)
T 3izy_P 82 VVAADDGVMKQTVE-SI-QHAK----DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENM 155 (537)
T ss_dssp ECBSSSCCCHHHHH-HH-HHHH----TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSS
T ss_pred EEECCCCccHHHHH-HH-HHHH----HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCc
Confidence 99999976655543 33 2333 34789999999999874321 78999999999
Q ss_pred HHHHHHHHHHHhC
Q psy3301 144 SEMFYYAQKAVLH 156 (608)
Q Consensus 144 ~~lf~~l~~~i~~ 156 (608)
+++++.+...+..
T Consensus 156 ~eLle~I~~l~~~ 168 (537)
T 3izy_P 156 MALAEATIALAEM 168 (537)
T ss_dssp HHHHHHHHHHHTT
T ss_pred hhHHHHHHHhhhc
Confidence 9999999987743
No 212
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.65 E-value=1.5e-16 Score=151.80 Aligned_cols=143 Identities=17% Similarity=0.145 Sum_probs=110.6
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCc-------eEecceEeCCcceeEeeeeccccc-----
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPP-------YTINTTTVYGQEKYLVLKEILVRD----- 474 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~-------~~i~~~~v~Gqe~~~~l~~~~~~~----- 474 (608)
.+.+||+|+|++|||||||+++|+++.+...+.++.+.+..... +.+.-++++|+++|..++..+++.
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI 85 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence 45799999999999999999999999998877766665221122 233334559999988887777766
Q ss_pred -ccccCCCCcc--cccc------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHH
Q psy3301 475 -EQLPVLLPVD--VDCD------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVF 543 (608)
Q Consensus 475 -v~d~~l~~~~--~~~~------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F 543 (608)
||| +++.+ ..+. ......++|+++|+||+||.+.+++..+++.++++.++++ ++++| ++.|++++|
T Consensus 86 ~v~d--~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l~ 162 (203)
T 1zbd_A 86 LMYD--ITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFE-FFEASAKDNINVKQTF 162 (203)
T ss_dssp EEEE--TTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCE-EEECBTTTTBSSHHHH
T ss_pred EEEE--CcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCe-EEEEECCCCCCHHHHH
Confidence 788 76654 2222 1122468999999999999887777788899999999985 88999 899999999
Q ss_pred HHHHHHHcC
Q psy3301 544 VKLATMAAF 552 (608)
Q Consensus 544 ~~l~~~a~~ 552 (608)
..|++.+..
T Consensus 163 ~~l~~~i~~ 171 (203)
T 1zbd_A 163 ERLVDVICE 171 (203)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987753
No 213
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.65 E-value=1.7e-16 Score=150.24 Aligned_cols=144 Identities=20% Similarity=0.196 Sum_probs=110.4
Q ss_pred CCCceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCc-------eEecceEeCCcceeEeeeeccccc---
Q psy3301 405 TTRNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPP-------YTINTTTVYGQEKYLVLKEILVRD--- 474 (608)
Q Consensus 405 ~~r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~-------~~i~~~~v~Gqe~~~~l~~~~~~~--- 474 (608)
.....+||+|+|++|||||||+++|+++.+...+.++.+.+..... +.+.-++++|+++|..++..+++.
T Consensus 21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 100 (193)
T 2oil_A 21 DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVG 100 (193)
T ss_dssp CCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence 3456799999999999999999999999998777666654211122 223334559999988887777665
Q ss_pred ---ccccCCCCcc--ccccc------ccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHH
Q psy3301 475 ---EQLPVLLPVD--VDCDK------YFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDRE 541 (608)
Q Consensus 475 ---v~d~~l~~~~--~~~~~------~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e 541 (608)
||| +++.. ..+.. .....++|+++|+||+||...+++..+++.++++.++++ ++++| ++.|+++
T Consensus 101 vi~v~D--~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~ 177 (193)
T 2oil_A 101 ALLVFD--LTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLL-FLETSALDSTNVEL 177 (193)
T ss_dssp EEEEEE--TTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEEECTTTCTTHHH
T ss_pred EEEEEE--CCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCE-EEEEeCCCCCCHHH
Confidence 778 66654 22221 122468999999999999877777778899999999985 89999 8999999
Q ss_pred HHHHHHHHHc
Q psy3301 542 VFVKLATMAA 551 (608)
Q Consensus 542 ~F~~l~~~a~ 551 (608)
+|..|++.+.
T Consensus 178 l~~~l~~~i~ 187 (193)
T 2oil_A 178 AFETVLKEIF 187 (193)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998774
No 214
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.65 E-value=2e-16 Score=147.42 Aligned_cols=136 Identities=13% Similarity=0.048 Sum_probs=99.2
Q ss_pred ceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecc-------eEeCCcceeEeeeeccccc------
Q psy3301 408 NVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINT-------TTVYGQEKYLVLKEILVRD------ 474 (608)
Q Consensus 408 ~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~-------~~v~Gqe~~~~l~~~~~~~------ 474 (608)
..+||+|+|++|||||||+++|+++.|.. +.+|++. .+...+.+++ .+++|++++. ++++
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~d~~il 78 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESE-QYKKEMLVDGQTHLVLIREEAGAPDAK-----FSGWADAVIF 78 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSS-EEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcce-eEEEEEEECCEEEEEEEEECCCCchhH-----HHHhCCEEEE
Confidence 45899999999999999999999999986 6666654 3333333333 3347877632 2332
Q ss_pred ccccCCCCcc--ccccc---------ccCCCCCcEEEEEeCCCCC--cchhcccccHHHHHHHcCCCCceEEc--cCCCH
Q psy3301 475 EQLPVLLPVD--VDCDK---------YFSTSKIPVMLVAGKSDMP--RARQDYLMQPDIFCETHKLSPAHSFS--AANND 539 (608)
Q Consensus 475 v~d~~l~~~~--~~~~~---------~~~~~~~p~ilVgnK~DL~--~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v 539 (608)
||| +++.+ ..+.. ....+++|+++||||+||. ..+++..+++.+++++++..+++++| ++.|+
T Consensus 79 v~D--~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 156 (178)
T 2iwr_A 79 VFS--LEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNV 156 (178)
T ss_dssp EEE--TTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTH
T ss_pred EEE--CcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCH
Confidence 788 77765 22222 1123689999999999994 55677778899999987433489999 89999
Q ss_pred HHHHHHHHHHHcC
Q psy3301 540 REVFVKLATMAAF 552 (608)
Q Consensus 540 ~e~F~~l~~~a~~ 552 (608)
+++|..|++.+..
T Consensus 157 ~~lf~~l~~~~~~ 169 (178)
T 2iwr_A 157 DRVFQEVAQKVVT 169 (178)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988753
No 215
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.65 E-value=1e-16 Score=147.27 Aligned_cols=140 Identities=17% Similarity=0.229 Sum_probs=105.0
Q ss_pred ceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceE-------ecceEeCCcceeEeeeeccccc------
Q psy3301 408 NVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYT-------INTTTVYGQEKYLVLKEILVRD------ 474 (608)
Q Consensus 408 ~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~-------i~~~~v~Gqe~~~~l~~~~~~~------ 474 (608)
..+||+|+|++|||||||+++++++.+...+.++.+. .+...+. +.-++.+|+++|..++..+++.
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKAD-SYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcce-EEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 3589999999999999999999999988777666554 2222222 3334458999888777776665
Q ss_pred ccccCCCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHH
Q psy3301 475 EQLPVLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVF 543 (608)
Q Consensus 475 v~d~~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F 543 (608)
+|| +++.+ ..+. .+....++|+++|+||+|+.+.+++..+++.++++.++++ ++++| ++.|++++|
T Consensus 82 v~d--~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l~ 158 (168)
T 1u8z_A 82 VFS--ITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVN-YVETSAKTRANVDKVF 158 (168)
T ss_dssp EEE--TTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCE-EEECCTTTCTTHHHHH
T ss_pred EEE--CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCe-EEEeCCCCCCCHHHHH
Confidence 788 66654 2222 2233468999999999999887777788899999999985 88899 899999999
Q ss_pred HHHHHHHc
Q psy3301 544 VKLATMAA 551 (608)
Q Consensus 544 ~~l~~~a~ 551 (608)
..|++.+.
T Consensus 159 ~~l~~~i~ 166 (168)
T 1u8z_A 159 FDLMREIR 166 (168)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
No 216
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.64 E-value=4.5e-16 Score=154.84 Aligned_cols=153 Identities=16% Similarity=0.128 Sum_probs=100.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCC-CCCcCCCC-CcceEecCccCCCceeEEEEeCCCCCCCh-----------HHH
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEE-FPELVPSK-AEEITIPPDVTPEMVPTHIVDYSEVDQTV-----------DEL 74 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~-~~~~~~~~-~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~-----------~~~ 74 (608)
...++|+|+|++|||||||+++|++.. +.....+. .+.......+...+..+.||||||+..+. ...
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~ 99 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCY 99 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999999987 44333332 22222222234456789999999976652 122
Q ss_pred HHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEe-CcCCCCCC----------------------
Q psy3301 75 TEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGN-KVDLVDYS---------------------- 131 (608)
Q Consensus 75 ~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~n-K~Dl~~~~---------------------- 131 (608)
...++.+|++++|+|+++..........|+..+. ......|+++|+| |+|+....
T Consensus 100 ~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~--~~~~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~ 177 (260)
T 2xtp_A 100 LLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIF--GEDAMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVAACGG 177 (260)
T ss_dssp HHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHH--CGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTT
T ss_pred HhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHh--CchhhccEEEEEEcccccCCccHHHHHHhcchHHHHHHHHHhCC
Confidence 3366789999999999863332221112333322 1112456666666 99987431
Q ss_pred ----C--cccCcccCcCHHHHHHHHHHHHhCCCCCcc
Q psy3301 132 ----T--VESSAKTLKNISEMFYYAQKAVLHPMAPIY 162 (608)
Q Consensus 132 ----~--~e~SAk~~~~i~~lf~~l~~~i~~~~~~l~ 162 (608)
. +++||+++.|++++|..+.+.+.......|
T Consensus 178 ~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~~~~~ 214 (260)
T 2xtp_A 178 RICAFNNRAEGSNQDDQVKELMDCIEDLLMEKNGDHY 214 (260)
T ss_dssp CEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred eEEEecCcccccccHHHHHHHHHHHHHHHHhCCCCcC
Confidence 1 678999999999999999988865433333
No 217
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.64 E-value=9.7e-17 Score=151.90 Aligned_cols=143 Identities=16% Similarity=0.172 Sum_probs=110.3
Q ss_pred CCceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCC-------CceEecceEeCCcceeEeeeeccccc----
Q psy3301 406 TRNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECD-------PPYTINTTTVYGQEKYLVLKEILVRD---- 474 (608)
Q Consensus 406 ~r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~-------~~~~i~~~~v~Gqe~~~~l~~~~~~~---- 474 (608)
....+||+|+|++|||||||+++|+++.+...+.++++.+... ..+.+.-++++|+++|..++..+++.
T Consensus 20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 99 (192)
T 2fg5_A 20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAA 99 (192)
T ss_dssp -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEE
Confidence 3456999999999999999999999999887777776652111 12334445669999998887777766
Q ss_pred --ccccCCCCcc--cccc------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHH
Q psy3301 475 --EQLPVLLPVD--VDCD------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREV 542 (608)
Q Consensus 475 --v~d~~l~~~~--~~~~------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~ 542 (608)
||| +++.+ ..+. .....+++|+++|+||+||.+.+++..+++.+++++++++ ++++| ++.|++++
T Consensus 100 ilV~d--~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l 176 (192)
T 2fg5_A 100 VIVYD--ITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAI-VVETSAKNAINIEEL 176 (192)
T ss_dssp EEEEE--TTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCE-EEECBTTTTBSHHHH
T ss_pred EEEEe--CCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEeCCCCcCHHHH
Confidence 788 76654 2222 1122468999999999999877777788899999999975 88899 89999999
Q ss_pred HHHHHHHHc
Q psy3301 543 FVKLATMAA 551 (608)
Q Consensus 543 F~~l~~~a~ 551 (608)
|..|++.+.
T Consensus 177 ~~~l~~~i~ 185 (192)
T 2fg5_A 177 FQGISRQIP 185 (192)
T ss_dssp HHHHHHTCC
T ss_pred HHHHHHHHH
Confidence 999998764
No 218
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.64 E-value=7.5e-17 Score=153.60 Aligned_cols=145 Identities=14% Similarity=0.115 Sum_probs=98.2
Q ss_pred cCCCceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceE-------ecceEeCCcceeEeeeeccccc--
Q psy3301 404 QTTRNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYT-------INTTTVYGQEKYLVLKEILVRD-- 474 (608)
Q Consensus 404 ~~~r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~-------i~~~~v~Gqe~~~~l~~~~~~~-- 474 (608)
......+||+|+|++|||||||+++|+++.+...+.++++.+.....+. +.-++++|+++|..++..+++.
T Consensus 23 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 102 (199)
T 2p5s_A 23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKAD 102 (199)
T ss_dssp -----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCS
T ss_pred cCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCC
Confidence 3445679999999999999999999999998877776666522112233 3334458999888777766655
Q ss_pred ----ccccCCCCcc--ccccc------ccCCCCCcEEEEEeCCCCC------cchhcccccHHHHHHHcCCCCceEEc--
Q psy3301 475 ----EQLPVLLPVD--VDCDK------YFSTSKIPVMLVAGKSDMP------RARQDYLMQPDIFCETHKLSPAHSFS-- 534 (608)
Q Consensus 475 ----v~d~~l~~~~--~~~~~------~~~~~~~p~ilVgnK~DL~------~~~~~~~~~~~~~~~~~~~~~~~~~S-- 534 (608)
||| +++.. ..+.. .....++|+++|+||+||. ..+++..+++.+++++++++ ++++|
T Consensus 103 ~iilv~d--~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~SA~ 179 (199)
T 2p5s_A 103 GVLLLYD--VTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGAL-FCETSAK 179 (199)
T ss_dssp EEEEEEE--TTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCE-EEECCTT
T ss_pred EEEEEEE--CCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCe-EEEeeCC
Confidence 788 76654 22221 2234689999999999996 34566677889999999985 88899
Q ss_pred cCCCHHHHHHHHHHHHc
Q psy3301 535 AANNDREVFVKLATMAA 551 (608)
Q Consensus 535 ~~~~v~e~F~~l~~~a~ 551 (608)
++.|++++|..|++.+.
T Consensus 180 ~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 180 DGSNIVEAVLHLAREVK 196 (199)
T ss_dssp TCTTHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 89999999999999874
No 219
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana}
Probab=99.64 E-value=6.1e-16 Score=142.32 Aligned_cols=143 Identities=22% Similarity=0.281 Sum_probs=116.2
Q ss_pred cChHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHH
Q psy3301 168 ELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLF 247 (608)
Q Consensus 168 ~l~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~ 247 (608)
.++++....++++|..+|.|++|.|+.+|+..+++. +|..++.+++..++..++.+ ++|.|++++|+.++...
T Consensus 20 ~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~d~~------~~g~i~~~ef~~~~~~~ 92 (166)
T 2aao_A 20 SLSEEEIAGLKEMFNMIDADKSGQITFEELKAGLKR-VGANLKESEILDLMQAADVD------NSGTIDYKEFIAATLHL 92 (166)
T ss_dssp HSCHHHHHHHHHHHHHHCTTCCSSBCHHHHHHHGGG-GTCCCCHHHHHHHHHHHCTT------CCSSBCHHHHHHHHTTC
T ss_pred hCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHH-hCCCCCHHHHHHHHHHhCCC------CCCeEcHHHHHHHHHHH
Confidence 356778889999999999999999999999999987 79999999999999999888 79999999999765211
Q ss_pred HhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCCC
Q psy3301 248 MQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPP 327 (608)
Q Consensus 248 ~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~~ 327 (608)
.. ....+.++.+|+.||.|++|.|+.+||+.++...|
T Consensus 93 ~~------------------------------------------~~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~~- 129 (166)
T 2aao_A 93 NK------------------------------------------IEREDHLFAAFTYFDKDGSGYITPDELQQACEEFG- 129 (166)
T ss_dssp HH------------------------------------------HHTTHHHHHHHHHHCTTCSSSBCHHHHHHHTCC---
T ss_pred hh------------------------------------------cccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcC-
Confidence 00 01125688999999999999999999999999988
Q ss_pred CCCCCCccccccceecCCCCccchhhHHhHhhhh
Q psy3301 328 ECPPWTDREMRAMVATNSKGWITMQGFLCYWILT 361 (608)
Q Consensus 328 ~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~~ 361 (608)
..+.+...++..+|.|++|.|+|+||+..+.-.
T Consensus 130 -~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~~~~ 162 (166)
T 2aao_A 130 -VEDVRIEELMRDVDQDNDGRIDYNEFVAMMQKG 162 (166)
T ss_dssp -------CCHHHHHCTTCSSSBCHHHHHHHHC--
T ss_pred -CCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHhc
Confidence 667778999999999999999999999987643
No 220
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Beroe abyssicola}
Probab=99.64 E-value=1.4e-16 Score=152.78 Aligned_cols=147 Identities=14% Similarity=0.228 Sum_probs=117.4
Q ss_pred ccChHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCC--CCChhhHHHHH-------HHHHHhcCCCccCCCCcch
Q psy3301 167 QELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDA--PLSRDSLEDVK-------IVIRKNINDGVSANNCITL 237 (608)
Q Consensus 167 ~~l~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~--~~~~~el~~i~-------~~~~~~~~~~~~~~~~i~~ 237 (608)
..++++.+..++++|..+|.|++|.|+..|+..+++. +|. .++.+++..++ ..++.+ ++|.|++
T Consensus 28 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~-~~~~~~~~~~~~~~l~~~~~~lf~~~D~d------~dg~i~~ 100 (208)
T 2hpk_A 28 EDLHPKMLSRLYKRFDTFDLDSDGKMEMDEVLYWPDR-MRQLVNATDEQVEKMRDAVRVFFLHKGVE------PVNGLLR 100 (208)
T ss_dssp --------CHHHHHHHHHCTTCSSEECHHHHTHHHHH-HHHHSCCCHHHHHHHHHHHHHHHHHTTCB------TTTBEEG
T ss_pred HHcCHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH-HHhhcCCCHHHHHHHHHHHHHHHHHhCCC------CCCeEcH
Confidence 4677778889999999999999999999999999987 576 78999999999 777777 7999999
Q ss_pred hhHHHHHHH--------HHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCC
Q psy3301 238 NGFLFLHNL--------FMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDG 309 (608)
Q Consensus 238 ~~F~~l~~~--------~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~ 309 (608)
++|+.++.. .+.. .. ....+.++.+|+.||+|+
T Consensus 101 ~EF~~~~~~~~~~~~~~~~~~-~~--------------------------------------~~~~~~~~~~F~~~D~d~ 141 (208)
T 2hpk_A 101 EDWVEANRVFAEAERERERRG-EP--------------------------------------SLIALLSNSYYDVLDDDG 141 (208)
T ss_dssp GGHHHHHHHHHHHHHHHHHTT-CC--------------------------------------CHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhhhhhhhhccC-Ch--------------------------------------HHHHHHHHHHHHHhCCCC
Confidence 999987651 1111 00 011234889999999999
Q ss_pred CCCCCHHHHHHhhccCCCCCCCCCccccccceecCCCCccchhhHHhHhhhh
Q psy3301 310 DGALSPEEQARLFSLCPPECPPWTDREMRAMVATNSKGWITMQGFLCYWILT 361 (608)
Q Consensus 310 dG~ls~~El~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~~ 361 (608)
+|+|+.+||+.++...| ..+.++..++..+|.|+||.|+|+||+..+.-.
T Consensus 142 ~G~Is~~El~~~l~~~g--~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~~~ 191 (208)
T 2hpk_A 142 DGTVDVDELKTMMKAFD--VPQEAAYTFFEKADTDKSGKLERTELVHLFRKF 191 (208)
T ss_dssp SSSBCHHHHHHHHHHTT--SCTTHHHHHHHHHCTTCCSSBCHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHhC--cCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 99999999999999998 677778999999999999999999999988644
No 221
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.64 E-value=1.5e-16 Score=149.15 Aligned_cols=144 Identities=17% Similarity=0.179 Sum_probs=109.7
Q ss_pred ceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEec-------ceEeCCcceeEeeeeccccc------
Q psy3301 408 NVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTIN-------TTTVYGQEKYLVLKEILVRD------ 474 (608)
Q Consensus 408 ~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~-------~~~v~Gqe~~~~l~~~~~~~------ 474 (608)
..+||+|+|++|||||||+++|+++.+...+.++.+. .+...+.++ -++++|+++|..++..+++.
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCC-EEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccc-eeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 4589999999999999999999999998877766654 222222332 33449999998888777765
Q ss_pred ccccCCCCcc--cccc-ccc-----CCCCCcEEEEEeCCCCCcc------------hhcccccHHHHHHHcCCCCceEEc
Q psy3301 475 EQLPVLLPVD--VDCD-KYF-----STSKIPVMLVAGKSDMPRA------------RQDYLMQPDIFCETHKLSPAHSFS 534 (608)
Q Consensus 475 v~d~~l~~~~--~~~~-~~~-----~~~~~p~ilVgnK~DL~~~------------~~~~~~~~~~~~~~~~~~~~~~~S 534 (608)
||| +++.. ..+. .+. ..+++|+++||||+||.+. +++..+++.++++.+++.+++++|
T Consensus 83 v~d--~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1mh1_A 83 CFS--LVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 160 (186)
T ss_dssp EEE--TTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEE--CCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence 788 77654 2222 111 1348999999999999753 456667889999999985589999
Q ss_pred --cCCCHHHHHHHHHHHHcCCC
Q psy3301 535 --AANNDREVFVKLATMAAFPR 554 (608)
Q Consensus 535 --~~~~v~e~F~~l~~~a~~p~ 554 (608)
++.|++++|..|++.+..|.
T Consensus 161 a~~g~gi~~l~~~l~~~~~~~~ 182 (186)
T 1mh1_A 161 ALTQRGLKTVFDEAIRAVLCPP 182 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHSCCC
T ss_pred CCCccCHHHHHHHHHHHHhccc
Confidence 89999999999999998775
No 222
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.64 E-value=4.3e-16 Score=144.89 Aligned_cols=143 Identities=15% Similarity=0.218 Sum_probs=104.0
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEec-------ceEeCCcceeEeeeeccccc-----
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTIN-------TTTVYGQEKYLVLKEILVRD----- 474 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~-------~~~v~Gqe~~~~l~~~~~~~----- 474 (608)
...+||+|+|++|||||||+++++++.+...+.++.+.+.....+.++ -++++|+++|..++..+++.
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 84 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL 84 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEE
Confidence 456999999999999999999999999887777666652222233333 34459999998888777765
Q ss_pred -ccccCCCCcc--cccc-------cc---cCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCH
Q psy3301 475 -EQLPVLLPVD--VDCD-------KY---FSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANND 539 (608)
Q Consensus 475 -v~d~~l~~~~--~~~~-------~~---~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v 539 (608)
+|| +++.. ..+. .. ....++|+++|+||+|+. .+++..+++.+++++.+..+++++| ++.|+
T Consensus 85 ~v~d--~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 161 (177)
T 1wms_A 85 LTFS--VDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNV 161 (177)
T ss_dssp EEEE--TTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred EEEE--CcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence 777 66654 2222 11 113789999999999997 4566778899999855444589999 89999
Q ss_pred HHHHHHHHHHHcC
Q psy3301 540 REVFVKLATMAAF 552 (608)
Q Consensus 540 ~e~F~~l~~~a~~ 552 (608)
+++|..|++.+..
T Consensus 162 ~~l~~~l~~~~~~ 174 (177)
T 1wms_A 162 AAAFEEAVRRVLA 174 (177)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998854
No 223
>2lvv_A Flagellar calcium-binding protein TB-24; EF-hand, metal binding protein; NMR {Trypanosoma brucei brucei}
Probab=99.64 E-value=3.8e-16 Score=152.05 Aligned_cols=143 Identities=18% Similarity=0.128 Sum_probs=120.0
Q ss_pred cChHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHH---------HHhcCCCccCCCCcchh
Q psy3301 168 ELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVI---------RKNINDGVSANNCITLN 238 (608)
Q Consensus 168 ~l~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~---------~~~~~~~~~~~~~i~~~ 238 (608)
.++++.+..|+++|..+|.|++|.|+.+|+..++.+.+|..++..++..++..+ +.+ ++|.|+|+
T Consensus 44 ~ls~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~lg~~~~~~~~~~~~~~~f~~~~~~~~D~d------~~G~I~~~ 117 (226)
T 2lvv_A 44 DKDAESKSRRIELFKQFDTNGTGKLGFREVLDGCYGILKLDEFTTHLPDIVQRAFDKAKDLGNKVK------GVGEEDLV 117 (226)
T ss_dssp SCCHHHHHHHHHHHHHHGGGSCSCBCSHHHHHHHHHTTCCTTTSSSCHHHHHHHHHHHHHHHHHHS------CCCCCSCB
T ss_pred hCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcccCCCCC------CCCcCCHH
Confidence 567888999999999999999999999999995555589888988998888888 887 79999999
Q ss_pred hHHHHHHHHHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHH
Q psy3301 239 GFLFLHNLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQ 318 (608)
Q Consensus 239 ~F~~l~~~~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El 318 (608)
+|+.+.... .. ....+.++.+|+.||+|++|+|+.+||
T Consensus 118 EF~~~~~~~-~~-----------------------------------------~~~~~~l~~~F~~~D~d~dG~Is~~El 155 (226)
T 2lvv_A 118 EFLEFRLML-CY-----------------------------------------IYDIFELTVMFDTMDKDGSLLLELQEF 155 (226)
T ss_dssp CHHHHHHHH-HH-----------------------------------------HHHHHHHHHHHHHHSCSSCCEECHHHH
T ss_pred HHHHHHHHH-Hh-----------------------------------------ccCHHHHHHHHHHHcCCCCCeEcHHHH
Confidence 999753211 10 001357899999999999999999999
Q ss_pred HHhhccC---CCCCCCCCccccccceecCCCCccchhhHHhHhhh
Q psy3301 319 ARLFSLC---PPECPPWTDREMRAMVATNSKGWITMQGFLCYWIL 360 (608)
Q Consensus 319 ~~~~~~~---~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~ 360 (608)
+.++..+ | ....++..++..+|.|+||.|+|+||+..+.-
T Consensus 156 ~~~l~~~~~~g--~~~~e~~~~~~~~D~d~dG~Is~~EF~~~~~~ 198 (226)
T 2lvv_A 156 KEALPKLKEWG--VDITDATTVFNEIDTNGSGVVTFDEFSCWAVT 198 (226)
T ss_dssp HHHHHHHHHHT--CCCCSCHHHHHHHCCSCSSCEEHHHHHHHHHH
T ss_pred HHHHHHHhhcC--CCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHh
Confidence 9999876 6 55556899999999999999999999987754
No 224
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.64 E-value=6.4e-16 Score=144.20 Aligned_cols=143 Identities=16% Similarity=0.164 Sum_probs=95.7
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCce--------EecceEeCCcceeEeeeeccccc----
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPY--------TINTTTVYGQEKYLVLKEILVRD---- 474 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~--------~i~~~~v~Gqe~~~~l~~~~~~~---- 474 (608)
+..+||+|+|++|||||||+++++++.+...+.++++.+.+...+ .+.-++.+|+++|..++..+++.
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 85 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCC 85 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEE
Confidence 456999999999999999999999999988877776652222222 23334559999999888877766
Q ss_pred --ccccCCCCcc--cccccc----------cCCCCCcEEEEEeCCCCC-cchhcccccHHHHHHHcCCCCceEEc--cCC
Q psy3301 475 --EQLPVLLPVD--VDCDKY----------FSTSKIPVMLVAGKSDMP-RARQDYLMQPDIFCETHKLSPAHSFS--AAN 537 (608)
Q Consensus 475 --v~d~~l~~~~--~~~~~~----------~~~~~~p~ilVgnK~DL~-~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~ 537 (608)
||| +++.. ..+..| ....++|+++|+||+||. ..+.+..+++.++++..+..+++++| ++.
T Consensus 86 i~v~d--~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (182)
T 1ky3_A 86 VLVYD--VTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAI 163 (182)
T ss_dssp EEEEE--TTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTB
T ss_pred EEEEE--CCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCC
Confidence 788 66654 222211 123789999999999995 44556678889999855444589999 899
Q ss_pred CHHHHHHHHHHHHc
Q psy3301 538 NDREVFVKLATMAA 551 (608)
Q Consensus 538 ~v~e~F~~l~~~a~ 551 (608)
|++++|..|++.+.
T Consensus 164 gi~~l~~~l~~~~~ 177 (182)
T 1ky3_A 164 NVDTAFEEIARSAL 177 (182)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998774
No 225
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.64 E-value=9.7e-17 Score=151.96 Aligned_cols=144 Identities=18% Similarity=0.134 Sum_probs=102.4
Q ss_pred CCceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceE-------ecceEeCCcceeEeeeeccccc----
Q psy3301 406 TRNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYT-------INTTTVYGQEKYLVLKEILVRD---- 474 (608)
Q Consensus 406 ~r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~-------i~~~~v~Gqe~~~~l~~~~~~~---- 474 (608)
....+||+|+|++|||||||+++|+++.+...+.++.+.+.....+. +.-++++|+++|..++..+++.
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~i 102 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGI 102 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 45679999999999999999999999998877766665522222233 3334558999888777766665
Q ss_pred --ccccCCCCcc--cccc------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHH
Q psy3301 475 --EQLPVLLPVD--VDCD------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREV 542 (608)
Q Consensus 475 --v~d~~l~~~~--~~~~------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~ 542 (608)
||| +++.. ..+. +.....++|+++|+||+||.+.+++..+++++++++++..+++++| ++.|++++
T Consensus 103 ilV~D--~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 180 (192)
T 2il1_A 103 ILVYD--ITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEI 180 (192)
T ss_dssp EEEEE--TTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHH
T ss_pred EEEEE--CcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHH
Confidence 788 77655 2222 2223468999999999999887777778899999986333488899 89999999
Q ss_pred HHHHHHHHc
Q psy3301 543 FVKLATMAA 551 (608)
Q Consensus 543 F~~l~~~a~ 551 (608)
|..|++.+.
T Consensus 181 ~~~l~~~i~ 189 (192)
T 2il1_A 181 FLKLVDDIL 189 (192)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
No 226
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo pealeii}
Probab=99.64 E-value=6.8e-16 Score=145.65 Aligned_cols=151 Identities=13% Similarity=0.209 Sum_probs=124.3
Q ss_pred cChHHHHHHHHHHHHhc-cCCCCCccCHHHHHHHhhccc---CCCCChhhHHHHH-----------HHHHHhcCCCccCC
Q psy3301 168 ELTPECIKALTRIFKVC-DLDNDNLLSDKELNAFQRRCF---DAPLSRDSLEDVK-----------IVIRKNINDGVSAN 232 (608)
Q Consensus 168 ~l~~~~~~~L~~~f~~~-D~d~dg~l~~~El~~~~~~~~---g~~~~~~el~~i~-----------~~~~~~~~~~~~~~ 232 (608)
.+++...+.++++|..+ |.|++|.|+.+|+..+++... |..++..+++.++ ..++.+ ++
T Consensus 5 ~ls~~~~~~l~~~F~~~~D~d~dG~i~~~E~~~~l~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~D~d------~d 78 (191)
T 2ccm_A 5 QLSDFQRNKILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLRKYADEN------ED 78 (191)
T ss_dssp CCCHHHHHHHHHHHHHHTCTTCSSEECHHHHHHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHHHHCTT------CS
T ss_pred hccHHHHHHHHHhccccccCCCCCeeeHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhcCCC------CC
Confidence 46678889999999999 999999999999999988732 8888999999988 777777 79
Q ss_pred CCcchhhHHHHHHHHHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCC
Q psy3301 233 NCITLNGFLFLHNLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGA 312 (608)
Q Consensus 233 ~~i~~~~F~~l~~~~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ 312 (608)
|.|+++||+.++......... ...+.......++.+|+.||+|+||.
T Consensus 79 G~i~~~Ef~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~F~~~D~d~dG~ 125 (191)
T 2ccm_A 79 EQVTKEEWLKMWAECVKSVEK---------------------------------GESLPEWLTKYMNFMFDVNDTSGDNI 125 (191)
T ss_dssp SCEEHHHHHHHHHHHHHHHHT---------------------------------TCCCCHHHHHHHHHHHHHHCTTCSSB
T ss_pred CeECHHHHHHHHHHHhccccc---------------------------------hhhchHHHHHHHHHHHHHhCCCCCCc
Confidence 999999999877553221000 01123334567999999999999999
Q ss_pred CCHHHHHHhhccCCCCCCCCCccccccceecCCCCccchhhHHhHhh
Q psy3301 313 LSPEEQARLFSLCPPECPPWTDREMRAMVATNSKGWITMQGFLCYWI 359 (608)
Q Consensus 313 ls~~El~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~ 359 (608)
|+.+|++.++...| ..+.+...+++.+|.|+||.|+|+||+..+.
T Consensus 126 I~~~E~~~~l~~~g--~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~~ 170 (191)
T 2ccm_A 126 IDKHEYSTVYMSYG--IPKSDCDAAFDTLSDGGKTMVTREIFARLWT 170 (191)
T ss_dssp CCHHHHHHHHHTTT--CCHHHHHHHHHHHTTTTTSCCBHHHHHHHHH
T ss_pred CcHHHHHHHHHHhC--CCHHHHHHHHHHhCCCCCCCcCHHHHHHHHH
Confidence 99999999999887 6666678899999999999999999998875
No 227
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.64 E-value=1.6e-16 Score=153.25 Aligned_cols=144 Identities=17% Similarity=0.180 Sum_probs=90.9
Q ss_pred ceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceE-------ecceEeCCcceeEeeeeccccc------
Q psy3301 408 NVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYT-------INTTTVYGQEKYLVLKEILVRD------ 474 (608)
Q Consensus 408 ~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~-------i~~~~v~Gqe~~~~l~~~~~~~------ 474 (608)
..+||+|+|++|||||||+++|+++.+...+.+|.+. .+...+. +.-++++|+++|..++..+++.
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 111 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFE-RYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL 111 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-------CCCCCE-EEEEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccce-eEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence 4689999999999999999999999988777666544 2222223 3334559999999888887776
Q ss_pred ccccCCCCcc--cccc-ccc-----CCCCCcEEEEEeCCCCCcch------------hcccccHHHHHHHcCCCCceEEc
Q psy3301 475 EQLPVLLPVD--VDCD-KYF-----STSKIPVMLVAGKSDMPRAR------------QDYLMQPDIFCETHKLSPAHSFS 534 (608)
Q Consensus 475 v~d~~l~~~~--~~~~-~~~-----~~~~~p~ilVgnK~DL~~~~------------~~~~~~~~~~~~~~~~~~~~~~S 534 (608)
||| +++.+ ..+. .|. ..+++|+++||||+||...+ ++..+++.++++++++.+++++|
T Consensus 112 v~d--~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 189 (214)
T 2j1l_A 112 CFD--VTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS 189 (214)
T ss_dssp EEE--TTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred EEE--CcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence 788 77655 2221 121 13689999999999997643 56667889999999985589999
Q ss_pred --cCCCHHHHHHHHHHHHcCCC
Q psy3301 535 --AANNDREVFVKLATMAAFPR 554 (608)
Q Consensus 535 --~~~~v~e~F~~l~~~a~~p~ 554 (608)
++.|++++|..|++.++...
T Consensus 190 A~~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 190 ARLHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp TTTTBSHHHHHHHHHHHHHHC-
T ss_pred CCCCCCHHHHHHHHHHHHHHhh
Confidence 89999999999999887553
No 228
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.63 E-value=3.3e-16 Score=149.41 Aligned_cols=142 Identities=16% Similarity=0.133 Sum_probs=109.1
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecc-------eEeCCcceeEeeeeccccc-----
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINT-------TTVYGQEKYLVLKEILVRD----- 474 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~-------~~v~Gqe~~~~l~~~~~~~----- 474 (608)
...+||+|+|++|||||||+++|+++.+...+.++.+. .+...+.+++ ++++|+++|..++..+++.
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFE-NYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCC-CCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccc-eEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 45689999999999999999999999998888777665 2222233333 3449999998888877766
Q ss_pred -ccccCCCCcc--ccc-cccc-----CCCCCcEEEEEeCCCCCcc------------hhcccccHHHHHHHcCCCCceEE
Q psy3301 475 -EQLPVLLPVD--VDC-DKYF-----STSKIPVMLVAGKSDMPRA------------RQDYLMQPDIFCETHKLSPAHSF 533 (608)
Q Consensus 475 -v~d~~l~~~~--~~~-~~~~-----~~~~~p~ilVgnK~DL~~~------------~~~~~~~~~~~~~~~~~~~~~~~ 533 (608)
||| +++.+ ..+ ..+. ..+++|+++|+||+||.+. +++..+++.++++.+++.+++++
T Consensus 102 ~v~d--~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 179 (201)
T 2gco_A 102 MCFS--IDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLEC 179 (201)
T ss_dssp EEEE--TTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEE--CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEe
Confidence 788 77654 222 1111 1358999999999999764 44666789999999998558899
Q ss_pred c--cCCCHHHHHHHHHHHHc
Q psy3301 534 S--AANNDREVFVKLATMAA 551 (608)
Q Consensus 534 S--~~~~v~e~F~~l~~~a~ 551 (608)
| ++.|++++|..|++.++
T Consensus 180 SA~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 180 SAKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHh
Confidence 9 89999999999999875
No 229
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.63 E-value=1.3e-16 Score=146.98 Aligned_cols=139 Identities=16% Similarity=0.177 Sum_probs=106.0
Q ss_pred eEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceE-------ecceEeCCcceeEeeeeccccc------c
Q psy3301 409 VYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYT-------INTTTVYGQEKYLVLKEILVRD------E 475 (608)
Q Consensus 409 ~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~-------i~~~~v~Gqe~~~~l~~~~~~~------v 475 (608)
.+||+|+|++|||||||+++|+++.+...+.++++.+.....+. +.-++.+|+++|..++..+++. +
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVV 82 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEE
Confidence 48999999999999999999999999877776766522122222 3334559999988877776665 7
Q ss_pred cccCCCCcc--ccccc------ccCCCCCcEEEEEeCCCCCcc---hhcccccHHHHHHHcCCCCceEEc--cCCCHHHH
Q psy3301 476 QLPVLLPVD--VDCDK------YFSTSKIPVMLVAGKSDMPRA---RQDYLMQPDIFCETHKLSPAHSFS--AANNDREV 542 (608)
Q Consensus 476 ~d~~l~~~~--~~~~~------~~~~~~~p~ilVgnK~DL~~~---~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~ 542 (608)
|| +++.. ..+.. ....+++|+++|+||+|+... +++..+++.++++.++++ ++++| ++.|++++
T Consensus 83 ~d--~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l 159 (170)
T 1ek0_A 83 YD--VTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLL-FFETSAKTGENVNDV 159 (170)
T ss_dssp EE--TTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCE-EEECCTTTCTTHHHH
T ss_pred Ee--cCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCE-EEEEeCCCCCCHHHH
Confidence 88 66654 22221 122478999999999999765 667778889999999985 88899 89999999
Q ss_pred HHHHHHHH
Q psy3301 543 FVKLATMA 550 (608)
Q Consensus 543 F~~l~~~a 550 (608)
|..|++.+
T Consensus 160 ~~~l~~~i 167 (170)
T 1ek0_A 160 FLGIGEKI 167 (170)
T ss_dssp HHHHHTTS
T ss_pred HHHHHHHH
Confidence 99998765
No 230
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A
Probab=99.63 E-value=3e-16 Score=148.51 Aligned_cols=141 Identities=17% Similarity=0.163 Sum_probs=116.5
Q ss_pred cChHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHH
Q psy3301 168 ELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLF 247 (608)
Q Consensus 168 ~l~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~ 247 (608)
.++++....++++|..+|.|++|.|+.+|+..+++. +|..++ .+++.++..++.+ ++|.|+|++|+.++...
T Consensus 45 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~-~g~~~~-~~~~~l~~~~D~d------~~g~i~~~EF~~~~~~~ 116 (191)
T 3k21_A 45 QSNDYDVEKLKSTFLVLDEDGKGYITKEQLKKGLEK-DGLKLP-YNFDLLLDQIDSD------GSGKIDYTEFIAAALDR 116 (191)
T ss_dssp HCCCHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHH-TTCCCC-TTHHHHHHHHCTT------CSSSEEHHHHHHHHSCG
T ss_pred HCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHH-cCCCcH-HHHHHHHHHhCCC------CCCeEeHHHHHHHHHhh
Confidence 456788899999999999999999999999999997 688888 8999999999988 89999999999764210
Q ss_pred HhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCC-
Q psy3301 248 MQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCP- 326 (608)
Q Consensus 248 ~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~- 326 (608)
. ....+.++.+|+.||+|++|+|+.+||+.++...+
T Consensus 117 ~-------------------------------------------~~~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~~~ 153 (191)
T 3k21_A 117 K-------------------------------------------QLSKKLIYCAFRVFDVDNDGEITTAELAHILYNGNK 153 (191)
T ss_dssp G-------------------------------------------GCCHHHHHHHHHHHSTTCSSCBCHHHHHHHHHHSSS
T ss_pred h-------------------------------------------hccHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhcCC
Confidence 0 01136788999999999999999999999998742
Q ss_pred -CCCCCC---CccccccceecCCCCccchhhHHhHhh
Q psy3301 327 -PECPPW---TDREMRAMVATNSKGWITMQGFLCYWI 359 (608)
Q Consensus 327 -~~~~~~---~~~~~~~~~d~~~~g~i~~~ef~~~w~ 359 (608)
...++. ++.+++..+|.|+||.|+|+||+..+.
T Consensus 154 ~~~l~~~~~~~~~~~~~~~D~d~dG~Is~~EF~~~~~ 190 (191)
T 3k21_A 154 KGNITQRDVNRVKRMIRDVDKNNDGKIDFHEFSEMMK 190 (191)
T ss_dssp CSCCCHHHHHHHHHHHHHHCSSSSSSBCHHHHHHHHC
T ss_pred CCCCCHhHHHHHHHHHHHhcCCCCCeECHHHHHHHHc
Confidence 112221 256888999999999999999998775
No 231
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.63 E-value=2.1e-16 Score=148.25 Aligned_cols=141 Identities=18% Similarity=0.224 Sum_probs=108.5
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCce-------EecceEeCCcceeEeeeeccccc-----
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPY-------TINTTTVYGQEKYLVLKEILVRD----- 474 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~-------~i~~~~v~Gqe~~~~l~~~~~~~----- 474 (608)
...+||+|+|++|||||||+++++++.+...+.++.+. .+...+ .+.-++++|+++|..++..+++.
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKAD-SYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 94 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCE-EEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccce-EEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEE
Confidence 35699999999999999999999999988777666554 222222 23334559999888777776665
Q ss_pred -ccccCCCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHH
Q psy3301 475 -EQLPVLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREV 542 (608)
Q Consensus 475 -v~d~~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~ 542 (608)
||| +++.+ ..+. .+....++|+++|+||+||.+.+++..+++.+++++++++ ++++| ++.|++++
T Consensus 95 ~v~d--~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l 171 (187)
T 2a9k_A 95 CVFS--ITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVN-YVETSAKTRANVDKV 171 (187)
T ss_dssp EEEE--TTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECCTTTCTTHHHH
T ss_pred EEEE--CcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCe-EEEeCCCCCCCHHHH
Confidence 788 66654 2221 2333468999999999999887777788899999999985 88889 89999999
Q ss_pred HHHHHHHHc
Q psy3301 543 FVKLATMAA 551 (608)
Q Consensus 543 F~~l~~~a~ 551 (608)
|..|++.+.
T Consensus 172 ~~~l~~~i~ 180 (187)
T 2a9k_A 172 FFDLMREIR 180 (187)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998874
No 232
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.63 E-value=5.2e-16 Score=146.41 Aligned_cols=143 Identities=14% Similarity=0.081 Sum_probs=110.2
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcC-CC----------------ceEecceEeCCcceeEeeee
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVEC-DP----------------PYTINTTTVYGQEKYLVLKE 469 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~-~~----------------~~~i~~~~v~Gqe~~~~l~~ 469 (608)
...+||+|+|++|||||||+++|+++.+...+.+|++.+.. .. .+.+.-++++|+++|..++.
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 88 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTT 88 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHH
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHH
Confidence 45799999999999999999999999988777666654221 11 23444556699998887777
Q ss_pred ccccc------ccccCCCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc
Q psy3301 470 ILVRD------EQLPVLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS 534 (608)
Q Consensus 470 ~~~~~------v~d~~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S 534 (608)
.+++. ||| +++.. ..+. .+....++|+++|+||+|+.+.+++..+++.++++.++++ ++++|
T Consensus 89 ~~~~~~d~~i~v~d--~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S 165 (195)
T 3bc1_A 89 AFFRDAMGFLLLFD--LTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIP-YFETS 165 (195)
T ss_dssp HTTTTCSEEEEEEE--TTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCC-EEECC
T ss_pred HHHcCCCEEEEEEE--CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCC-EEEEE
Confidence 76665 777 66654 2222 2222378999999999999887777778899999999985 89999
Q ss_pred --cCCCHHHHHHHHHHHHcC
Q psy3301 535 --AANNDREVFVKLATMAAF 552 (608)
Q Consensus 535 --~~~~v~e~F~~l~~~a~~ 552 (608)
++.|++++|..|++.+..
T Consensus 166 a~~~~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 166 AANGTNISHAIEMLLDLIMK 185 (195)
T ss_dssp TTTCTTHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 899999999999988743
No 233
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.63 E-value=9.9e-17 Score=153.72 Aligned_cols=142 Identities=15% Similarity=0.098 Sum_probs=107.8
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCC-------ceEecceEeCCcceeEeeeeccccc-----
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDP-------PYTINTTTVYGQEKYLVLKEILVRD----- 474 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~-------~~~i~~~~v~Gqe~~~~l~~~~~~~----- 474 (608)
...+||+|+|++|||||||+++|+++.+...+.+|.+. .+.. .+.+.-.+++|+++|..++..+++.
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 104 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFE-NYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 104 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE-EEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccce-eEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence 45699999999999999999999999998877766654 2221 2334445569999998888877776
Q ss_pred -ccccCCCCcc--ccc-cccc-----CCCCCcEEEEEeCCCCCcc------------hhcccccHHHHHHHcCCCCceEE
Q psy3301 475 -EQLPVLLPVD--VDC-DKYF-----STSKIPVMLVAGKSDMPRA------------RQDYLMQPDIFCETHKLSPAHSF 533 (608)
Q Consensus 475 -v~d~~l~~~~--~~~-~~~~-----~~~~~p~ilVgnK~DL~~~------------~~~~~~~~~~~~~~~~~~~~~~~ 533 (608)
||| +++.+ ..+ ..|. ..+++|+++||||+||.+. +++..+++.+++++++..+++++
T Consensus 105 lv~D--~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 182 (205)
T 1gwn_A 105 ICFD--ISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 182 (205)
T ss_dssp EEEE--TTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEE--CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEe
Confidence 788 77655 333 2221 1368999999999999742 45667889999999985558899
Q ss_pred c--c-CCCHHHHHHHHHHHHc
Q psy3301 534 S--A-ANNDREVFVKLATMAA 551 (608)
Q Consensus 534 S--~-~~~v~e~F~~l~~~a~ 551 (608)
| + +.|++++|..|++.++
T Consensus 183 SAk~~~~gv~~lf~~l~~~~l 203 (205)
T 1gwn_A 183 SALQSENSVRDIFHVATLACV 203 (205)
T ss_dssp CTTTCHHHHHHHHHHHHHHHH
T ss_pred eeccCCcCHHHHHHHHHHHHh
Confidence 9 3 5799999999999875
No 234
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora erythraea} SCOP: a.39.1.5
Probab=99.63 E-value=3.5e-16 Score=145.22 Aligned_cols=148 Identities=14% Similarity=0.162 Sum_probs=119.4
Q ss_pred hHHHHHHHHHHHHhccCCCCCccCHHHHHH----HhhcccCCCCChhhHH-----------HHHHHHHHhcCCCccCCCC
Q psy3301 170 TPECIKALTRIFKVCDLDNDNLLSDKELNA----FQRRCFDAPLSRDSLE-----------DVKIVIRKNINDGVSANNC 234 (608)
Q Consensus 170 ~~~~~~~L~~~f~~~D~d~dg~l~~~El~~----~~~~~~g~~~~~~el~-----------~i~~~~~~~~~~~~~~~~~ 234 (608)
+++.++.++++|..+|.|++|.|+.+|+.. +++. +|.+++.+++. .++..++.+ ++|.
T Consensus 2 s~~~~~~l~~~F~~~D~d~~G~i~~~el~~~~~~~l~~-~g~~~~~~~~~~l~~~~~~~~~~lf~~~D~d------~dg~ 74 (176)
T 1nya_A 2 TAIASDRLKKRFDRWDFDGNGALERADFEKEAQHIAEA-FGKDAGAAEVQTLKNAFGGLFDYLAKEAGVG------SDGS 74 (176)
T ss_dssp CSHHHHHHHHHHHHCCSSCCSSBCSHHHHHHHHHHHHH-TSSCSSSHHHHHHHHHHHHHHHHHHHHHTSC------TTCC
T ss_pred cHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHH-cCCCCCcHHHHHHHHHHHHHHHHHHHHhCCC------CCCe
Confidence 467788999999999999999999999999 4554 79999999888 556666666 7899
Q ss_pred cchhhHHHHHHHHHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCC
Q psy3301 235 ITLNGFLFLHNLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALS 314 (608)
Q Consensus 235 i~~~~F~~l~~~~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls 314 (608)
|++++|+.++.........+ .+.+.....++.+|+.||.|++|.|+
T Consensus 75 i~~~Ef~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~F~~~D~d~~G~I~ 120 (176)
T 1nya_A 75 LTEEQFIRVTENLIFEQGEA----------------------------------SFNRVLGPVVKGIVGMCDKNADGQIN 120 (176)
T ss_dssp BCHHHHHHHHHHHHSSSCHH----------------------------------HHHHHHHHHHHHHHHHTCSSCCSEEE
T ss_pred EcHHHHHHHHHHHhcCCchh----------------------------------hHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 99999998776543221100 01112246789999999999999999
Q ss_pred HHHHHHhhccCCCCCCCCCccccccceecCCCCccchhhHHhHhhh
Q psy3301 315 PEEQARLFSLCPPECPPWTDREMRAMVATNSKGWITMQGFLCYWIL 360 (608)
Q Consensus 315 ~~El~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~ 360 (608)
.+|++.++..+| .++.+...+++.+|.|++|.|+|+||+..+.-
T Consensus 121 ~~e~~~~l~~~g--~~~~~~~~~~~~~D~d~dg~i~~~ef~~~~~~ 164 (176)
T 1nya_A 121 ADEFAAWLTALG--MSKAEAAEAFNQVDTNGNGELSLDELLTAVRD 164 (176)
T ss_dssp HHHHHHHHHHTT--CCHHHHHHHHHHHCTTCSSEEEHHHHHHHHSC
T ss_pred HHHHHHHHHHhC--CCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 999999999987 55556788999999999999999999988754
No 235
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.63 E-value=1e-15 Score=168.18 Aligned_cols=144 Identities=19% Similarity=0.140 Sum_probs=104.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCC-------cCCCC-----CcceEe-----cCcc---CCCceeEEEEeCCCCC
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPE-------LVPSK-----AEEITI-----PPDV---TPEMVPTHIVDYSEVD 68 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~-------~~~~~-----~~~~~i-----~~~~---~~~~~~~~i~Dt~G~~ 68 (608)
+..+|+|+|+.++|||||+++|+...... .+... ....++ ...+ +...+.++||||||++
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 45789999999999999999998632110 01000 000111 1111 3345889999999999
Q ss_pred CChHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC----------------
Q psy3301 69 QTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST---------------- 132 (608)
Q Consensus 69 ~~~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~---------------- 132 (608)
+|...+...++.+|++|+|+|+++..+++... .|..... .++|+++|+||+|+.....
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~-~~~~~~~-----~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~ 156 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLA-NCYTAME-----MDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDAT 156 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHH-HHHHHHH-----TTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCCT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHH-HHHHHHH-----CCCCEEEeeeccCcccccHHHHHHHHHHHhCCCcc
Confidence 99999999999999999999999987777766 6665544 3689999999999976432
Q ss_pred --cccCcccCcCHHHHHHHHHHHHhCCC
Q psy3301 133 --VESSAKTLKNISEMFYYAQKAVLHPM 158 (608)
Q Consensus 133 --~e~SAk~~~~i~~lf~~l~~~i~~~~ 158 (608)
+++||++|.||+++++.+.+.+..|.
T Consensus 157 ~vi~vSAktg~GI~~Ll~~I~~~lp~p~ 184 (599)
T 3cb4_D 157 DAVRCSAKTGVGVQDVLERLVRDIPPPE 184 (599)
T ss_dssp TCEEECTTTCTTHHHHHHHHHHHSCCCC
T ss_pred eEEEeecccCCCchhHHHHHhhcCCCcc
Confidence 78999999999999999999887654
No 236
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}
Probab=99.63 E-value=6.4e-17 Score=154.02 Aligned_cols=143 Identities=24% Similarity=0.208 Sum_probs=108.5
Q ss_pred cChHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHH
Q psy3301 168 ELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLF 247 (608)
Q Consensus 168 ~l~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~ 247 (608)
.++++.+..|+++|..+|.|++|.|+.+|+..+++. +|..++..+++.++..++.+ ++|.|+|++|+.++...
T Consensus 50 ~l~~~e~~~l~~~F~~~D~d~~G~Is~~El~~~l~~-~g~~~~~~~~~~l~~~~D~d------~~g~I~~~EF~~~~~~~ 122 (197)
T 3pm8_A 50 HLCDVEINNLRNIFIALDVDNSGTLSSQEILDGLKK-IGYQKIPPDIHQVLRDIDSN------ASGQIHYTDFLAATIDK 122 (197)
T ss_dssp HCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHH-HC----CHHHHHHHHC-------------CEEHHHHHHTTCCH
T ss_pred HCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHH-hCCCCCHHHHHHHHHHhCCC------CCCeEcHHHHHHHHHHH
Confidence 356778899999999999999999999999999997 68899999999999999988 79999999998654211
Q ss_pred HhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccC--
Q psy3301 248 MQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLC-- 325 (608)
Q Consensus 248 ~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~-- 325 (608)
... ...+.++.+|+.||+|++|+|+.+||+.++...
T Consensus 123 ~~~------------------------------------------~~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~~~ 160 (197)
T 3pm8_A 123 QTY------------------------------------------LKKEVCLIPFKFFDIDGNGKISVEELKRIFGRDDI 160 (197)
T ss_dssp HHH------------------------------------------CSHHHHHHHHHHHCTTCSSEECHHHHHHHHC----
T ss_pred Hhh------------------------------------------hhHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhccc
Confidence 100 013578999999999999999999999999988
Q ss_pred CCCCCCCCccccccceecCCCCccchhhHHhHhh
Q psy3301 326 PPECPPWTDREMRAMVATNSKGWITMQGFLCYWI 359 (608)
Q Consensus 326 ~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~ 359 (608)
+....+.+..+++..+|.|+||.|+|+||+..+.
T Consensus 161 ~~~~~~~~~~~l~~~~D~d~dG~Is~~EF~~~l~ 194 (197)
T 3pm8_A 161 ENPLIDKAIDSLLQEVDLNGDGEIDFHEFMLMMS 194 (197)
T ss_dssp CCHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHH
Confidence 3223334468889999999999999999998764
No 237
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=99.63 E-value=1.7e-16 Score=150.93 Aligned_cols=142 Identities=13% Similarity=0.154 Sum_probs=118.5
Q ss_pred cccChHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHH
Q psy3301 166 KQELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHN 245 (608)
Q Consensus 166 ~~~l~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~ 245 (608)
...+++..+..|+++|..+|.|++|.|+..||..+++. +|..++..++..++..+ +|.|+|++|+.++.
T Consensus 48 ~~~ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~-lg~~~~~~~~~~l~~~~----------~g~i~~~eF~~~~~ 116 (196)
T 3dtp_E 48 FAMFTQHQVQEFKEAFQLIDQDKDGFISKNDIRATFDS-LGRLCTEQELDSMVAEA----------PGPINFTMFLTIFG 116 (196)
T ss_dssp SCSSCTTTHHHHHHHHHHHCCSCSSBCCHHHHHHHHHT-TSCCCCHHHHHHHHTTS----------SSCCBHHHHHHHHH
T ss_pred hhhCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHH-hCCCCCHHHHHHHHHHc----------cCCCcHHHHHHHHH
Confidence 34577888899999999999999999999999999997 79999999888777653 68999999997764
Q ss_pred HHHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccC
Q psy3301 246 LFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLC 325 (608)
Q Consensus 246 ~~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~ 325 (608)
..+... ...+.+..+|+.||.|++|+|+.+||+.++ .+
T Consensus 117 ~~~~~~-----------------------------------------~~~~~l~~~F~~~D~d~~G~Is~~El~~~l-~~ 154 (196)
T 3dtp_E 117 DRIAGT-----------------------------------------DEEDVIVNAFNLFDEGDGKCKEETLKRSLT-TW 154 (196)
T ss_dssp HCCCSS-----------------------------------------CCHHHHHHHHHTTCSSSSCCBHHHHHHHHH-HS
T ss_pred HHhcCC-----------------------------------------CcHHHHHHHHHHHCCCCCCcCcHHHHHHHH-Hc
Confidence 311100 013578899999999999999999999999 88
Q ss_pred CCCCCCCCccccccceecCCCCccchhhHHhHhhh
Q psy3301 326 PPECPPWTDREMRAMVATNSKGWITMQGFLCYWIL 360 (608)
Q Consensus 326 ~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~ 360 (608)
|......++..++..+|.|++|.|+|++|+..+.-
T Consensus 155 g~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~ 189 (196)
T 3dtp_E 155 GEKFSQDEVDQALSEAPIDGNGLIDIKKFAQILTK 189 (196)
T ss_dssp SSCCCHHHHHHHHHSSCEETTEECHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHcCCCCCCEEeHHHHHHHHHc
Confidence 75555566788999999999999999999998753
No 238
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=99.62 E-value=1.6e-16 Score=142.59 Aligned_cols=133 Identities=19% Similarity=0.237 Sum_probs=112.2
Q ss_pred HHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHHHhcCCCcch
Q psy3301 177 LTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQRGRSHTT 256 (608)
Q Consensus 177 L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~~~~~~~e~~ 256 (608)
++++|..+|.|++|.|+.+|+..+++. +|..++..++..++.. + ++|.|+|++|+.++.....
T Consensus 7 l~~~F~~~D~d~~G~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~---~------~~g~i~~~eF~~~~~~~~~------- 69 (145)
T 2bl0_B 7 IQECFQIFDKDNDGKVSIEELGSALRS-LGKNPTNAELNTIKGQ---L------NAKEFDLATFKTVYRKPIK------- 69 (145)
T ss_dssp HHHHHHHHCTTCSSCEEGGGHHHHHHH-TTCCCCHHHHHHHHHH---H------TSSEECHHHHHHHHTSCCC-------
T ss_pred HHHHHHHhCCCCcCccCHHHHHHHHHH-hCCCCCHHHHHHHHHh---c------CCCeEcHHHHHHHHHHHhh-------
Confidence 999999999999999999999999987 6999999999888877 4 6899999999976531100
Q ss_pred hHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCCCCCCCCCccc
Q psy3301 257 WTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPECPPWTDRE 336 (608)
Q Consensus 257 w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~~~~~~~~~~~ 336 (608)
-.......++.+|+.||+|++|+|+.+|++.++..+|....+.+...
T Consensus 70 ---------------------------------~~~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~g~~~~~~~~~~ 116 (145)
T 2bl0_B 70 ---------------------------------TPTEQSKEMLDAFRALDKEGNGTIQEAELRQLLLNLGDALTSSEVEE 116 (145)
T ss_dssp ---------------------------------CGGGGHHHHHHHHHHHCSSSSSEEEHHHHHHHHHHSSSCCCHHHHHH
T ss_pred ---------------------------------cCcccHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHcCCCCCHHHHHH
Confidence 01122567899999999999999999999999999974445555788
Q ss_pred cccceecCCCCccchhhHHhHhh
Q psy3301 337 MRAMVATNSKGWITMQGFLCYWI 359 (608)
Q Consensus 337 ~~~~~d~~~~g~i~~~ef~~~w~ 359 (608)
+++.+|.|++|.|+|+||+..+.
T Consensus 117 ~~~~~d~~~dg~i~~~eF~~~~~ 139 (145)
T 2bl0_B 117 LMKEVSVSGDGAINYESFVDMLV 139 (145)
T ss_dssp HHTTCCCCTTSEEEHHHHHHHHH
T ss_pred HHHHcCCCCCCcEeHHHHHHHHH
Confidence 99999999999999999999875
No 239
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.62 E-value=5.2e-16 Score=149.06 Aligned_cols=146 Identities=18% Similarity=0.193 Sum_probs=106.4
Q ss_pred ccCCCceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecc-------eEeCCcceeEeeeeccccc-
Q psy3301 403 KQTTRNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINT-------TTVYGQEKYLVLKEILVRD- 474 (608)
Q Consensus 403 ~~~~r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~-------~~v~Gqe~~~~l~~~~~~~- 474 (608)
+...+..+||+|+|++|||||||+++|+++.+...+.++.+.+.....+.+++ ++++|+++|..++..+++.
T Consensus 14 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 93 (213)
T 3cph_A 14 GKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGA 93 (213)
T ss_dssp ------CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTC
T ss_pred CCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccC
Confidence 33445679999999999999999999999998877776766522223333333 3448999988877777665
Q ss_pred -----ccccCCCCcc--cccccc------cCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCH
Q psy3301 475 -----EQLPVLLPVD--VDCDKY------FSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANND 539 (608)
Q Consensus 475 -----v~d~~l~~~~--~~~~~~------~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v 539 (608)
||| +++.. ..+..| ....++|+++|+||+||. .+++..+++.++++.++++ ++++| ++.|+
T Consensus 94 d~ii~v~d--~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi 169 (213)
T 3cph_A 94 MGIILVYD--VTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIP-FIESSAKNDDNV 169 (213)
T ss_dssp SEEEEEEE--TTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS-SCCSCHHHHHHHHHHHTCC-EEECBTTTTBSS
T ss_pred CEEEEEEE--CCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc-ccccCHHHHHHHHHHcCCE-EEEEeCCCCCCH
Confidence 778 66654 222211 224589999999999994 4556677889999999985 89999 89999
Q ss_pred HHHHHHHHHHHcC
Q psy3301 540 REVFVKLATMAAF 552 (608)
Q Consensus 540 ~e~F~~l~~~a~~ 552 (608)
+++|..|++.+..
T Consensus 170 ~~l~~~l~~~~~~ 182 (213)
T 3cph_A 170 NEIFFTLAKLIQE 182 (213)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987743
No 240
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca binding, EF-hand, luminescent protein; HET: CZH; 1.10A {Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A* 1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Probab=99.62 E-value=3.7e-16 Score=147.87 Aligned_cols=155 Identities=14% Similarity=0.150 Sum_probs=115.3
Q ss_pred cChHHHHHHHHHHHHhccCCCCCccCHHHHH-----HHhhcccCCCCChh-----hHHHHHHHHHHhcCCCccCCCCcch
Q psy3301 168 ELTPECIKALTRIFKVCDLDNDNLLSDKELN-----AFQRRCFDAPLSRD-----SLEDVKIVIRKNINDGVSANNCITL 237 (608)
Q Consensus 168 ~l~~~~~~~L~~~f~~~D~d~dg~l~~~El~-----~~~~~~~g~~~~~~-----el~~i~~~~~~~~~~~~~~~~~i~~ 237 (608)
.++++.++.++++|..+|.|++|.|+.+|+. .+++. +|..++.. +++.++..++.+ ++|.|+|
T Consensus 13 ~~s~~~~~~l~~~F~~~D~d~~G~i~~~El~~~~~~~~l~~-~g~~~~~~~~~~~~~~~l~~~~D~d------~~g~i~~ 85 (195)
T 1qv0_A 13 FDNPRWIKRHKHMFDFLDINGNGKITLDEIVSKASDDICAK-LEATPEQTKRHQVCVEAFFRGCGME------YGKEIAF 85 (195)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHTHHHH-TTCCHHHHHHHHHHHHHHHHHTTCC------TTCCBCH
T ss_pred cCCHHHHHHHHHHHhHcCCCCCCcCcHHHHHHHHHHHHHHH-cCCCccHHHHHHHHHHHHHHHcCCC------CCceEcH
Confidence 4588999999999999999999999999999 56665 68877766 577788887777 7999999
Q ss_pred hhHHHHHHHHHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHH
Q psy3301 238 NGFLFLHNLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEE 317 (608)
Q Consensus 238 ~~F~~l~~~~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~E 317 (608)
++|+.++.......... |. . .+ ...-...+..+|+.||+|++|+|+.+|
T Consensus 86 ~EF~~~~~~~~~~~~~~--~~--------------~--------------~~-~~~~~~~~~~~F~~~D~d~~G~I~~~E 134 (195)
T 1qv0_A 86 PQFLDGWKQLATSELKK--WA--------------R--------------NE-PTLIREWGDAVFDIFDKDGSGTITLDE 134 (195)
T ss_dssp HHHHHHHHHHHHHHHHH--HH--------------T--------------TC-CCHHHHHHHHHHHHTC----CEECHHH
T ss_pred HHHHHHHHHHHhhhhhc--cc--------------c--------------cH-HHHHHHHHHHHHHHhcCCCCCcCcHHH
Confidence 99998876543211000 00 0 00 000023345899999999999999999
Q ss_pred HHHhhccCCCCCCCCCccccccceecCCCCccchhhHHhHhhh
Q psy3301 318 QARLFSLCPPECPPWTDREMRAMVATNSKGWITMQGFLCYWIL 360 (608)
Q Consensus 318 l~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~ 360 (608)
|+.++..+|....+.+..++++.+|.|++|.|+|+||+..+.-
T Consensus 135 l~~~l~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~~ 177 (195)
T 1qv0_A 135 WKAYGKISGISPSQEDCEATFRHCDLDNAGDLDVDEMTRQHLG 177 (195)
T ss_dssp HHHHHHHHSSCCCHHHHHHHHHHSCCCTTSCEEHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHH
Confidence 9999998874444555788999999999999999999998753
No 241
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.62 E-value=2.5e-16 Score=149.51 Aligned_cols=140 Identities=18% Similarity=0.146 Sum_probs=105.7
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEe-------cceEeCCcceeEeeeeccccc-----
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTI-------NTTTVYGQEKYLVLKEILVRD----- 474 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i-------~~~~v~Gqe~~~~l~~~~~~~----- 474 (608)
...+||+|+|++|||||||+++|+++.+...+.+|.+. .+...+.+ .-++++|++. ..++..+++.
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii 103 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLES-TYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV 103 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCc-eEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence 34599999999999999999999999998888766655 22222233 3344488877 4444554444
Q ss_pred -ccccCCCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCC-CHHH
Q psy3301 475 -EQLPVLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AAN-NDRE 541 (608)
Q Consensus 475 -v~d~~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~-~v~e 541 (608)
||| +++.+ +.+. ......++|+++||||+|+.+.+++..+++.+++++++++ ++++| ++. |+++
T Consensus 104 lv~D--~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~g~~gi~~ 180 (196)
T 2atv_A 104 LVYD--ITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACA-FYECSACTGEGNITE 180 (196)
T ss_dssp EEEE--TTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSE-EEECCTTTCTTCHHH
T ss_pred EEEE--CcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCe-EEEECCCcCCcCHHH
Confidence 788 77654 2222 2223468999999999999887888888999999999985 88899 898 9999
Q ss_pred HHHHHHHHHc
Q psy3301 542 VFVKLATMAA 551 (608)
Q Consensus 542 ~F~~l~~~a~ 551 (608)
+|..|++.+.
T Consensus 181 l~~~l~~~i~ 190 (196)
T 2atv_A 181 IFYELCREVR 190 (196)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998774
No 242
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.62 E-value=5.6e-16 Score=145.61 Aligned_cols=140 Identities=18% Similarity=0.255 Sum_probs=105.2
Q ss_pred ceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceE-------ecceEeCCcceeEeeeeccccc------
Q psy3301 408 NVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYT-------INTTTVYGQEKYLVLKEILVRD------ 474 (608)
Q Consensus 408 ~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~-------i~~~~v~Gqe~~~~l~~~~~~~------ 474 (608)
..+||+|+|++|||||||+++++++.+...+.++.+. .+...+. +.-++++|++.|..++..+++.
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCE-EEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchh-eEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 4589999999999999999999999988877666543 2222222 3335559999998888877765
Q ss_pred ccccCCCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHH
Q psy3301 475 EQLPVLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVF 543 (608)
Q Consensus 475 v~d~~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F 543 (608)
+|| +++.+ ..+. .+....++|+++|+||+|+.+ +++..+++.++++.++++ ++++| ++.|++++|
T Consensus 82 v~d--~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~gi~~l~ 157 (189)
T 4dsu_A 82 VFA--INNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIP-FIETSAKTRQGVDDAF 157 (189)
T ss_dssp EEE--TTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHHHHHHHHHHHTCC-EEECCTTTCTTHHHHH
T ss_pred EEE--CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHHHHHHHHHHcCCe-EEEEeCCCCCCHHHHH
Confidence 777 76654 1222 334457899999999999974 455678899999999986 89999 899999999
Q ss_pred HHHHHHHcC
Q psy3301 544 VKLATMAAF 552 (608)
Q Consensus 544 ~~l~~~a~~ 552 (608)
..|++.+..
T Consensus 158 ~~l~~~~~~ 166 (189)
T 4dsu_A 158 YTLVREIRK 166 (189)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998754
No 243
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.62 E-value=2.2e-16 Score=152.42 Aligned_cols=144 Identities=14% Similarity=0.149 Sum_probs=110.0
Q ss_pred CCceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCC-----------------ceEecceEeCCcceeEeee
Q psy3301 406 TRNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDP-----------------PYTINTTTVYGQEKYLVLK 468 (608)
Q Consensus 406 ~r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~-----------------~~~i~~~~v~Gqe~~~~l~ 468 (608)
....+||+|+|++|||||||+++|+++.+...+.+|.+.+.... .+.+.-++++|+++|..++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~ 101 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT 101 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence 45679999999999999999999999998777666655411111 2234444558998888777
Q ss_pred eccccc------ccccCCCCcc--cccccc-------cCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEE
Q psy3301 469 EILVRD------EQLPVLLPVD--VDCDKY-------FSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSF 533 (608)
Q Consensus 469 ~~~~~~------v~d~~l~~~~--~~~~~~-------~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (608)
..+++. ||| +++.. ..+..| ....++|+++|+||+||.+.+++..+++.++++.++++ ++++
T Consensus 102 ~~~~~~~d~iilV~D--~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~ 178 (217)
T 2f7s_A 102 TAFFRDAMGFLLMFD--LTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIP-YFET 178 (217)
T ss_dssp HHHHTTCCEEEEEEE--TTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCC-EEEE
T ss_pred HHHhcCCCEEEEEEE--CcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCc-EEEE
Confidence 766665 778 66654 222211 11268999999999999887777788899999999986 8999
Q ss_pred c--cCCCHHHHHHHHHHHHcC
Q psy3301 534 S--AANNDREVFVKLATMAAF 552 (608)
Q Consensus 534 S--~~~~v~e~F~~l~~~a~~ 552 (608)
| ++.|++++|..|++.+..
T Consensus 179 Sa~~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 179 SAATGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp BTTTTBTHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHH
Confidence 9 899999999999988754
No 244
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.62 E-value=1.9e-16 Score=147.31 Aligned_cols=140 Identities=19% Similarity=0.217 Sum_probs=107.6
Q ss_pred ceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCce-------EecceEeCCcceeEeeeeccccc------
Q psy3301 408 NVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPY-------TINTTTVYGQEKYLVLKEILVRD------ 474 (608)
Q Consensus 408 ~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~-------~i~~~~v~Gqe~~~~l~~~~~~~------ 474 (608)
..+||+|+|++|||||||+++++++.+...+.++.+.+.+...+ .+.-++++|+++|..++..+++.
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~ 92 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVV 92 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 44999999999999999999999999988777666542222222 23334559999988887776665
Q ss_pred ccccCCCCcc--cccccc------cCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHH
Q psy3301 475 EQLPVLLPVD--VDCDKY------FSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFV 544 (608)
Q Consensus 475 v~d~~l~~~~--~~~~~~------~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~ 544 (608)
||| +++.. ..+..+ ....++|+++|+||+||.+.+++..+++.++++.++++ ++++| ++.|++++|.
T Consensus 93 v~d--~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~l~~ 169 (179)
T 2y8e_A 93 VYD--ITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQLFR 169 (179)
T ss_dssp EEE--TTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCE-EEEEBTTTTBSHHHHHH
T ss_pred EEE--CCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCe-EEEEeCCCCCCHHHHHH
Confidence 778 66644 222211 12468999999999999887777788899999999985 88999 8999999999
Q ss_pred HHHHHH
Q psy3301 545 KLATMA 550 (608)
Q Consensus 545 ~l~~~a 550 (608)
.|++.+
T Consensus 170 ~l~~~~ 175 (179)
T 2y8e_A 170 RVAAAL 175 (179)
T ss_dssp HHHHTC
T ss_pred HHHHHH
Confidence 998755
No 245
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5
Probab=99.62 E-value=7.4e-17 Score=152.35 Aligned_cols=140 Identities=21% Similarity=0.270 Sum_probs=118.2
Q ss_pred ChHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHHH
Q psy3301 169 LTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFM 248 (608)
Q Consensus 169 l~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~~ 248 (608)
++++.+..++++|..+|.|++|.|+.+|+..+++. +|..++.+++..++..++.+ ++|.|+|++|+.++...
T Consensus 4 ls~~~~~~l~~~F~~~D~d~dG~I~~~E~~~~l~~-~g~~~~~~~~~~l~~~~D~d------~dG~I~~~EF~~~~~~~- 75 (188)
T 1s6i_A 4 LSEEEIGGLKELFKMIDTDNSGTITFDELKDGLKR-VGSELMESEIKDLMDAADID------KSGTIDYGEFIAATVHL- 75 (188)
T ss_dssp SSCTTTCSHHHHHHTTSSSSSSCEEHHHHHHHHTT-TTCCCCHHHHHHHHHHTCTT------CSSEECHHHHHHHHTTS-
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHH-cCCCCCHHHHHHHHHHcCCC------CCCeEeHHHHHHHHHHH-
Confidence 44555677999999999999999999999999997 69899999999999999888 79999999999664210
Q ss_pred hcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCCCC
Q psy3301 249 QRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPE 328 (608)
Q Consensus 249 ~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~~~ 328 (608)
.. ..+ .+.++.+|+.||+|++|+|+.+||+.++...|
T Consensus 76 ---~~----------------------------~~~----------~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~g-- 112 (188)
T 1s6i_A 76 ---NK----------------------------LER----------EENLVSAFSYFDKDGSGYITLDEIQQACKDFG-- 112 (188)
T ss_dssp ---SS----------------------------SCC----------CCSTHHHHHHTTTTCSSEEEHHHHHHTTTTTT--
T ss_pred ---hc----------------------------cCH----------HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcC--
Confidence 00 000 12367789999999999999999999999988
Q ss_pred CCCCCccccccceecCCCCccchhhHHhHhh
Q psy3301 329 CPPWTDREMRAMVATNSKGWITMQGFLCYWI 359 (608)
Q Consensus 329 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~ 359 (608)
..+.++..+++.+|.|++|.|+|+||+..+.
T Consensus 113 ~~~~~~~~~~~~~D~d~dG~Is~~EF~~~~~ 143 (188)
T 1s6i_A 113 LDDIHIDDMIKEIDQDNDGQIDYGEFAAMMR 143 (188)
T ss_dssp CCTTHHHHHHHHHCSSSSSEEETTHHHHTTS
T ss_pred CCHHHHHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 6667788999999999999999999998864
No 246
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein; HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB: 1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Probab=99.62 E-value=4.7e-16 Score=146.54 Aligned_cols=155 Identities=13% Similarity=0.074 Sum_probs=119.3
Q ss_pred cChHHHHHHHHHHHHhccCCCCCccCHHHHH-----HHhhcccCCCCChh-----hHHHHHHHHHHhcCCCccCCCCcch
Q psy3301 168 ELTPECIKALTRIFKVCDLDNDNLLSDKELN-----AFQRRCFDAPLSRD-----SLEDVKIVIRKNINDGVSANNCITL 237 (608)
Q Consensus 168 ~l~~~~~~~L~~~f~~~D~d~dg~l~~~El~-----~~~~~~~g~~~~~~-----el~~i~~~~~~~~~~~~~~~~~i~~ 237 (608)
..+++..+.++++|..+|.|++|.|+.+|+. .+++. +|..++.. +++.++..++.+ ++|.|+|
T Consensus 9 ~~~~~~~~~l~~~F~~~D~d~~G~i~~~El~~~~~~~~l~~-~g~~~~~~~~~~~~~~~l~~~~D~d------~~g~i~~ 81 (191)
T 1uhk_A 9 FDNPRWIGRHKHMFNFLDVNHNGKISLDEMVYKASDIVINN-LGATPEQAKRHKDAVEAFFGGAGMK------YGVETDW 81 (191)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCCSEEEHHHHHHHHHHHHHHT-SCCCHHHHHHHHHHHHHHHHHTTCC------TTCEEEH
T ss_pred cCCHHHHHHHHHHHhhccCCCCCcCcHHHHHHHHHHHHHHH-cCCCchhHHHHHHHHHHHHHHhCcC------CCCcCcH
Confidence 3567888999999999999999999999999 67765 78888777 577788887777 7999999
Q ss_pred hhHHHHHHHHHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHH
Q psy3301 238 NGFLFLHNLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEE 317 (608)
Q Consensus 238 ~~F~~l~~~~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~E 317 (608)
++|+.++.......... + .. .+ ...-...++.+|+.||+|++|+|+.+|
T Consensus 82 ~EF~~~~~~~~~~~~~~--------~--------~~--------------~~-~~~~~~~~~~~F~~~D~d~~G~Is~~E 130 (191)
T 1uhk_A 82 PAYIEGWKKLATDELEK--------Y--------AK--------------NE-PTLIRIWGDALFDIVDKDQNGAITLDE 130 (191)
T ss_dssp HHHHHHHHHHHHHHHHH--------H--------HT--------------TC-CCHHHHHHHHHHHHHCTTCSSEECHHH
T ss_pred HHHHHHHHHHhcchhhh--------h--------hh--------------hh-HHHHHHHHHHHHHHhcCCCCCcCcHHH
Confidence 99998776543211000 0 00 00 000012345899999999999999999
Q ss_pred HHHhhccCCCCCCCCCccccccceecCCCCccchhhHHhHhhh
Q psy3301 318 QARLFSLCPPECPPWTDREMRAMVATNSKGWITMQGFLCYWIL 360 (608)
Q Consensus 318 l~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~ 360 (608)
|+.++..+|....+.++..+++.+|.|++|.|+|+||+..+.-
T Consensus 131 l~~~l~~~g~~~~~~~~~~~~~~~D~d~dG~i~~~eF~~~~~~ 173 (191)
T 1uhk_A 131 WKAYTKAAGIIQSSEDCEETFRVCDIDESGQLDVDEMTRQHLG 173 (191)
T ss_dssp HHHHHHHHTSCCSHHHHHHHHHHSCCCTTSCEEHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 9999998874444555788999999999999999999998773
No 247
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.62 E-value=3.9e-16 Score=149.66 Aligned_cols=143 Identities=19% Similarity=0.161 Sum_probs=104.9
Q ss_pred eEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEec-------ceEeCCcceeEeeeeccccc------c
Q psy3301 409 VYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTIN-------TTTVYGQEKYLVLKEILVRD------E 475 (608)
Q Consensus 409 ~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~-------~~~v~Gqe~~~~l~~~~~~~------v 475 (608)
.+||+|+|++|||||||+++|+++.+...+.++.+. .+...+.++ -++++|+++|..++..+++. |
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 103 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFE-NYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 103 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC-------CC-EEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEE
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccc-eEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEE
Confidence 489999999999999999999999998877766655 222223333 33459999998888777765 7
Q ss_pred cccCCCCcc--ccc-cccc-----CCCCCcEEEEEeCCCCCcc------------hhcccccHHHHHHHcCCCCceEEc-
Q psy3301 476 QLPVLLPVD--VDC-DKYF-----STSKIPVMLVAGKSDMPRA------------RQDYLMQPDIFCETHKLSPAHSFS- 534 (608)
Q Consensus 476 ~d~~l~~~~--~~~-~~~~-----~~~~~p~ilVgnK~DL~~~------------~~~~~~~~~~~~~~~~~~~~~~~S- 534 (608)
|| +++.+ ..+ ..+. ..+++|+++|+||+||... +.+..+++.++++.+++.+++++|
T Consensus 104 ~d--~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 181 (207)
T 2fv8_A 104 FS--VDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSA 181 (207)
T ss_dssp EE--TTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EE--CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeC
Confidence 88 77654 333 1111 1358999999999999754 345667889999999986588999
Q ss_pred -cCCCHHHHHHHHHHHHcCCC
Q psy3301 535 -AANNDREVFVKLATMAAFPR 554 (608)
Q Consensus 535 -~~~~v~e~F~~l~~~a~~p~ 554 (608)
++.|++++|..|++.++.+.
T Consensus 182 ~~g~gi~el~~~l~~~i~~~~ 202 (207)
T 2fv8_A 182 KTKEGVREVFETATRAALQKR 202 (207)
T ss_dssp TTCTTHHHHHHHHHHHHHSCC
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 89999999999999998776
No 248
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.62 E-value=2.4e-15 Score=164.94 Aligned_cols=144 Identities=17% Similarity=0.154 Sum_probs=106.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCC--CCC-----cCCCCC-----cceEec-----Ccc---CCCceeEEEEeCCCCC
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEE--FPE-----LVPSKA-----EEITIP-----PDV---TPEMVPTHIVDYSEVD 68 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~--~~~-----~~~~~~-----~~~~i~-----~~~---~~~~~~~~i~Dt~G~~ 68 (608)
+..+|+|+|+.++|||||+++|+... +.. .+.... ...++. ..+ +...+.++||||||++
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 45799999999999999999998632 110 000000 011211 111 2345789999999999
Q ss_pred CChHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC----------------
Q psy3301 69 QTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST---------------- 132 (608)
Q Consensus 69 ~~~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~---------------- 132 (608)
+|...+...++.+|++|+|+|+++..+.+... .|..... .++|+++|+||+|+.....
T Consensus 85 dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~-~~~~a~~-----~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~~~ 158 (600)
T 2ywe_A 85 DFSYEVSRALAACEGALLLIDASQGIEAQTVA-NFWKAVE-----QDLVIIPVINKIDLPSADVDRVKKQIEEVLGLDPE 158 (600)
T ss_dssp GGHHHHHHHHHTCSEEEEEEETTTBCCHHHHH-HHHHHHH-----TTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCCGG
T ss_pred hHHHHHHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH-----CCCCEEEEEeccCccccCHHHHHHHHHHhhCCCcc
Confidence 99999999999999999999999998887776 6665443 4789999999999976432
Q ss_pred --cccCcccCcCHHHHHHHHHHHHhCCC
Q psy3301 133 --VESSAKTLKNISEMFYYAQKAVLHPM 158 (608)
Q Consensus 133 --~e~SAk~~~~i~~lf~~l~~~i~~~~ 158 (608)
+++||++|.||+++++.+.+.+..|.
T Consensus 159 ~vi~vSAktg~GI~~Lle~I~~~lp~p~ 186 (600)
T 2ywe_A 159 EAILASAKEGIGIEEILEAIVNRIPPPK 186 (600)
T ss_dssp GCEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred cEEEEEeecCCCchHHHHHHHHhccccc
Confidence 78999999999999999999886654
No 249
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.61 E-value=1.8e-16 Score=151.63 Aligned_cols=142 Identities=17% Similarity=0.183 Sum_probs=106.9
Q ss_pred CCceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCC-------CceEecceEeCCcceeEeeeeccccc----
Q psy3301 406 TRNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECD-------PPYTINTTTVYGQEKYLVLKEILVRD---- 474 (608)
Q Consensus 406 ~r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~-------~~~~i~~~~v~Gqe~~~~l~~~~~~~---- 474 (608)
....+||+|+|++|||||||+++|+++.+...+.++.+. .+. ..+.+.-++++|+++|..++..+++.
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 105 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 105 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEE-EEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecc-eeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence 345699999999999999999999999998777666543 222 22333355669999998888887776
Q ss_pred --ccccCCCCcc--cccc-ccc-----CCCCCcEEEEEeCCCCCcchh------------cccccHHHHHHHcCCCCceE
Q psy3301 475 --EQLPVLLPVD--VDCD-KYF-----STSKIPVMLVAGKSDMPRARQ------------DYLMQPDIFCETHKLSPAHS 532 (608)
Q Consensus 475 --v~d~~l~~~~--~~~~-~~~-----~~~~~p~ilVgnK~DL~~~~~------------~~~~~~~~~~~~~~~~~~~~ 532 (608)
||| +++.. ..+. .|. ..+++|+++||||+||...+. +..+++.++++.+++.++++
T Consensus 106 i~v~d--~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 183 (204)
T 4gzl_A 106 LICFS--LVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 183 (204)
T ss_dssp EEEEE--TTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEEE--CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEE
Confidence 788 77655 2221 111 126899999999999976543 66778999999999877899
Q ss_pred Ec--cCCCHHHHHHHHHHHH
Q psy3301 533 FS--AANNDREVFVKLATMA 550 (608)
Q Consensus 533 ~S--~~~~v~e~F~~l~~~a 550 (608)
+| ++.|++++|..|++.+
T Consensus 184 ~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 184 CSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp CCTTTCTTHHHHHHHHHHTT
T ss_pred eeCCCCCCHHHHHHHHHHHh
Confidence 99 8999999999998865
No 250
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.61 E-value=8.8e-16 Score=145.15 Aligned_cols=142 Identities=19% Similarity=0.156 Sum_probs=108.0
Q ss_pred ceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCce-------EecceEeCCcceeEeeeeccccc------
Q psy3301 408 NVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPY-------TINTTTVYGQEKYLVLKEILVRD------ 474 (608)
Q Consensus 408 ~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~-------~i~~~~v~Gqe~~~~l~~~~~~~------ 474 (608)
..+||+|+|++|||||||+++|+++.+...+.++++.+.....+ .+.-++++|+++|..++..+++.
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 93 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL 93 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEE
Confidence 45899999999999999999999999988777776552211222 23334559999998888777766
Q ss_pred ccccCCCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHH
Q psy3301 475 EQLPVLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVF 543 (608)
Q Consensus 475 v~d~~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F 543 (608)
||| +++.. ..+. .+....++|+++|+||+|+.+ +++..+++.+++++++++ ++++| ++.|++++|
T Consensus 94 v~d--~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l~ 169 (195)
T 1x3s_A 94 VYD--VTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSML-FIEASAKTCDGVQCAF 169 (195)
T ss_dssp EEE--TTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS-CCSCHHHHHHHHHHTTCE-EEECCTTTCTTHHHHH
T ss_pred EEE--CcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc-cccCHHHHHHHHHHcCCE-EEEecCCCCCCHHHHH
Confidence 788 66654 2222 222236899999999999954 456667889999999986 88889 899999999
Q ss_pred HHHHHHHcCC
Q psy3301 544 VKLATMAAFP 553 (608)
Q Consensus 544 ~~l~~~a~~p 553 (608)
..|++.+...
T Consensus 170 ~~l~~~~~~~ 179 (195)
T 1x3s_A 170 EELVEKIIQT 179 (195)
T ss_dssp HHHHHHHHTS
T ss_pred HHHHHHHHhh
Confidence 9999988643
No 251
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.61 E-value=1.9e-15 Score=161.77 Aligned_cols=140 Identities=20% Similarity=0.234 Sum_probs=99.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCC--CcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHH------------H
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFP--ELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDE------------L 74 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~------------~ 74 (608)
..+||+|+|++|||||||+++|++..+. ...+++ +.......+...+..+.+|||+|..+.... .
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gt-T~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~ 257 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGT-TRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRV 257 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC-------CCEEEEETTEEEEESSCSCC-----------CCSCCHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCC-cCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHH
Confidence 4589999999999999999999998753 223332 233333334445567899999997443221 2
Q ss_pred HHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC----------------------
Q psy3301 75 TEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST---------------------- 132 (608)
Q Consensus 75 ~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~---------------------- 132 (608)
...++.+|++++|+|+++..+.+.. .+...+.. .+.|+++|+||+|+.....
T Consensus 258 ~~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (439)
T 1mky_A 258 VDSIEKADVVVIVLDATQGITRQDQ--RMAGLMER----RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL 331 (439)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH----TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHH----cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcE
Confidence 4578899999999999987776653 34444442 4789999999999875321
Q ss_pred cccCcccCcCHHHHHHHHHHHHh
Q psy3301 133 VESSAKTLKNISEMFYYAQKAVL 155 (608)
Q Consensus 133 ~e~SAk~~~~i~~lf~~l~~~i~ 155 (608)
+++||++|.||+++|..+.+.+.
T Consensus 332 ~~~SA~~g~gv~~l~~~i~~~~~ 354 (439)
T 1mky_A 332 IFTSADKGWNIDRMIDAMNLAYA 354 (439)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999887663
No 252
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.61 E-value=4.1e-15 Score=150.94 Aligned_cols=141 Identities=17% Similarity=0.188 Sum_probs=97.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCcC------CCC----------------------CcceEec-----------
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELV------PSK----------------------AEEITIP----------- 49 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~------~~~----------------------~~~~~i~----------- 49 (608)
...+|+|+|++|||||||+++|++..+.+.. .++ .+...+.
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 4679999999999999999999999875321 111 0000000
Q ss_pred ---Ccc----------CCCceeEEEEeCCCCCC-------------ChHHHHHHHHhcCcEE-EEEEcCChhhHHHHHHh
Q psy3301 50 ---PDV----------TPEMVPTHIVDYSEVDQ-------------TVDELTEEIQKAHVIC-LVYSVVDDASIDRLSSH 102 (608)
Q Consensus 50 ---~~~----------~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~ad~ii-lV~d~~~~~s~~~~~~~ 102 (608)
..+ ......+.||||||... +......+++.++.++ +|+|+++..+..... .
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~-~ 183 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL-K 183 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH-H
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH-H
Confidence 000 01136799999999642 3345667888888776 699998765443332 3
Q ss_pred HHHHHhhhccCCCCcEEEEEeCcCCCCCCC--------------------cccCcccCcCHHHHHHHHHHHH
Q psy3301 103 WLPFLRNCLVDTCLPIVLVGNKVDLVDYST--------------------VESSAKTLKNISEMFYYAQKAV 154 (608)
Q Consensus 103 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------------------~e~SAk~~~~i~~lf~~l~~~i 154 (608)
|...+. ..+.|+++|+||+|+..... +++||++|.|++++++.+.+..
T Consensus 184 ~~~~~~----~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~ 251 (299)
T 2aka_B 184 IAKEVD----PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER 251 (299)
T ss_dssp HHHHHC----TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred HHHHhC----CCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence 444443 34789999999999864311 7899999999999999988743
No 253
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.61 E-value=1.3e-15 Score=158.17 Aligned_cols=147 Identities=18% Similarity=0.087 Sum_probs=98.9
Q ss_pred CccE-EEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCC--h------HHHHHHHH
Q psy3301 9 RNVR-ILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQT--V------DELTEEIQ 79 (608)
Q Consensus 9 ~~~k-I~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~--~------~~~~~~~~ 79 (608)
..++ |+|+|++|||||||+++|++..+.....+..+.......+...+..+.+|||+|.-.. . ......+.
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~ 256 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAK 256 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHHGGG
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHHHHH
Confidence 4566 9999999999999999999987632211111222222223334467899999996221 1 11233578
Q ss_pred hcCcEEEEEEcCChh--hHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCC--------------------C-cccC
Q psy3301 80 KAHVICLVYSVVDDA--SIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYS--------------------T-VESS 136 (608)
Q Consensus 80 ~ad~iilV~d~~~~~--s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~--------------------~-~e~S 136 (608)
.+|++++|+|++++. ..+.+. .|...+.. ....+.|+++|+||+|+.+.. . +++|
T Consensus 257 ~aD~il~VvD~s~~~~~~~~~~~-~~~~~L~~-l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~S 334 (364)
T 2qtf_A 257 YSDALILVIDSTFSENLLIETLQ-SSFEILRE-IGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPIS 334 (364)
T ss_dssp GSSEEEEEEETTSCHHHHHHHHH-HHHHHHHH-HTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECB
T ss_pred hCCEEEEEEECCCCcchHHHHHH-HHHHHHHH-hCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 899999999999876 555554 56666654 234578999999999986531 1 6799
Q ss_pred cccCcCHHHHHHHHHHHHhCC
Q psy3301 137 AKTLKNISEMFYYAQKAVLHP 157 (608)
Q Consensus 137 Ak~~~~i~~lf~~l~~~i~~~ 157 (608)
|+++.|+++++..+.+.+..+
T Consensus 335 A~~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 335 ALKRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp TTTTBSHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHhccc
Confidence 999999999999998877543
No 254
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.61 E-value=2e-16 Score=149.72 Aligned_cols=142 Identities=13% Similarity=0.091 Sum_probs=104.6
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCCC-----------CCCCCCcCCC--------ceEecceEeCCcceeEee
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSKT-----------SITSPVECDP--------PYTINTTTVYGQEKYLVL 467 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~-----------~t~~~~~~~~--------~~~i~~~~v~Gqe~~~~l 467 (608)
...+||+|+|++|||||||+ +++.+.+...+. +|.+.+.+.. .+.+.-++++|+++|..+
T Consensus 12 ~~~~ki~vvG~~~~GKssL~-~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 90 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNL-KWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNAS 90 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHH-HHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHH
T ss_pred ccccEEEEECCCCCCHHHHH-HHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHH
Confidence 45699999999999999999 566666665532 2333322221 233445566999999999
Q ss_pred eeccccc------ccccCCCCc------c--ccccccc-----CCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCC
Q psy3301 468 KEILVRD------EQLPVLLPV------D--VDCDKYF-----STSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLS 528 (608)
Q Consensus 468 ~~~~~~~------v~d~~l~~~------~--~~~~~~~-----~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~ 528 (608)
+..++++ ||| +++. + ..+..|. ...++|+++||||+||.+. +..+++.++++++++.
T Consensus 91 ~~~~~~~~d~~i~v~D--~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~ 166 (198)
T 3t1o_A 91 RKLILRGVDGIVFVAD--SAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA--LPVEMVRAVVDPEGKF 166 (198)
T ss_dssp HHHHTTTCCEEEEEEE--CCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC--CCHHHHHHHHCTTCCS
T ss_pred HHHHHhcCCEEEEEEE--CCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc--cCHHHHHHHHHhcCCc
Confidence 8888876 788 6632 1 2222221 3478999999999999764 5678899999999984
Q ss_pred CceEEc--cCCCHHHHHHHHHHHHcCC
Q psy3301 529 PAHSFS--AANNDREVFVKLATMAAFP 553 (608)
Q Consensus 529 ~~~~~S--~~~~v~e~F~~l~~~a~~p 553 (608)
+++++| ++.|++++|..|++.+...
T Consensus 167 ~~~~~Sa~~~~gv~~l~~~l~~~i~~~ 193 (198)
T 3t1o_A 167 PVLEAVATEGKGVFETLKEVSRLVLAR 193 (198)
T ss_dssp CEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred eEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence 599999 8999999999999987543
No 255
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.61 E-value=4.9e-17 Score=154.89 Aligned_cols=143 Identities=15% Similarity=0.164 Sum_probs=103.4
Q ss_pred CCceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEec-------ceEeCCcceeEeeeeccccc----
Q psy3301 406 TRNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTIN-------TTTVYGQEKYLVLKEILVRD---- 474 (608)
Q Consensus 406 ~r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~-------~~~v~Gqe~~~~l~~~~~~~---- 474 (608)
....+||+|+|++|||||||+++|+++.+...+.++.+.+.....+.++ -++++|+++|..++..+++.
T Consensus 30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 109 (199)
T 3l0i_B 30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 109 (199)
T ss_dssp CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEE
Confidence 3568999999999999999999999999887766666552222333333 33459999999888887776
Q ss_pred --ccccCCCCcc--cccc------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHH
Q psy3301 475 --EQLPVLLPVD--VDCD------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREV 542 (608)
Q Consensus 475 --v~d~~l~~~~--~~~~------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~ 542 (608)
||| +++.+ +.+. ......++|+++|+||+||.+.+++..+++.++++.++++ ++++| ++.|++++
T Consensus 110 i~v~d--~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~vSA~~g~gv~~l 186 (199)
T 3l0i_B 110 IVVYD--VTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIP-FLETSAKNATNVEQS 186 (199)
T ss_dssp EECC---CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCC-BCCCCC---HHHHHH
T ss_pred EEEEE--CCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCe-EEEEECCCCCCHHHH
Confidence 788 77655 2222 2223458999999999999988888888999999999986 88999 89999999
Q ss_pred HHHHHHHHc
Q psy3301 543 FVKLATMAA 551 (608)
Q Consensus 543 F~~l~~~a~ 551 (608)
|..|++.+.
T Consensus 187 ~~~l~~~l~ 195 (199)
T 3l0i_B 187 FMTMAAEIK 195 (199)
T ss_dssp HHHHTTTTT
T ss_pred HHHHHHHHH
Confidence 999987653
No 256
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Probab=99.61 E-value=6.1e-16 Score=143.53 Aligned_cols=134 Identities=15% Similarity=0.201 Sum_probs=116.5
Q ss_pred HHHHHHHHHHhccCCCCCccCHHHHHHHhhcccC-CCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHHHhcC
Q psy3301 173 CIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFD-APLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQRG 251 (608)
Q Consensus 173 ~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g-~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~~~~~ 251 (608)
..+.++++|..+|.|++|.|+.+|+..+++. +| .+++.++++.++..++.+ ++|.|++++|+.++..
T Consensus 5 ~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~-~~~~~~~~~~~~~l~~~~D~~------~~g~i~~~ef~~~~~~----- 72 (172)
T 2znd_A 5 DQSFLWNVFQRVDKDRSGVISDTELQQALSN-GTWTPFNPVTVRSIISMFDRE------NKAGVNFSEFTGVWKY----- 72 (172)
T ss_dssp -CHHHHHHHHHHCTTCSSCEEHHHHHHHCCC-SSSSCCCHHHHHHHHHHHCSS------SSSEECHHHHHHHHHH-----
T ss_pred chhHHHHHHHHhCCCCCCcCcHHHHHHHHHh-cCCCCCCHHHHHHHHHHhCCC------CCCcCCHHHHHHHHHH-----
Confidence 4567999999999999999999999999997 56 789999999999999888 7999999999976532
Q ss_pred CCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCCCCCCC
Q psy3301 252 RSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPECPP 331 (608)
Q Consensus 252 ~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~~~~~~ 331 (608)
.+.++.+|+.||+|++|+|+.+|++.++...|....+
T Consensus 73 -------------------------------------------~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~ 109 (172)
T 2znd_A 73 -------------------------------------------ITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSD 109 (172)
T ss_dssp -------------------------------------------HHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCH
T ss_pred -------------------------------------------HHHHHHHHHHHCCCCCCccCHHHHHHHHHHcCCCCCH
Confidence 2458889999999999999999999999998744444
Q ss_pred CCccccccceecCCCCccchhhHHhHhhhh
Q psy3301 332 WTDREMRAMVATNSKGWITMQGFLCYWILT 361 (608)
Q Consensus 332 ~~~~~~~~~~d~~~~g~i~~~ef~~~w~~~ 361 (608)
.+...+++.+|.|++|.|+|+||+..+...
T Consensus 110 ~~~~~~~~~~d~~~dg~i~~~eF~~~~~~~ 139 (172)
T 2znd_A 110 QFHDILIRKFDRQGRGQIAFDDFIQGCIVL 139 (172)
T ss_dssp HHHHHHHHHHCTTCSSSEEHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 557888899999999999999999998754
No 257
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.61 E-value=3.8e-16 Score=144.18 Aligned_cols=142 Identities=18% Similarity=0.238 Sum_probs=105.4
Q ss_pred eEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCc-------eEecceEeCCcceeEeeeeccccc------c
Q psy3301 409 VYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPP-------YTINTTTVYGQEKYLVLKEILVRD------E 475 (608)
Q Consensus 409 ~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~-------~~i~~~~v~Gqe~~~~l~~~~~~~------v 475 (608)
.+||+|+|++|||||||+++++++.+...+.++.+. .+... +.+.-++.+|+++|..++..+++. +
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVED-TYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCE-EEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccc-cEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 589999999999999999999999987776655544 11111 223344558999888777766655 7
Q ss_pred cccCCCCcc--cccccc-------c-CCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHH
Q psy3301 476 QLPVLLPVD--VDCDKY-------F-STSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVF 543 (608)
Q Consensus 476 ~d~~l~~~~--~~~~~~-------~-~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F 543 (608)
|| +++.+ +.+..+ . ..+++|+++|+||+|+...+++...++.++++.++++ ++++| ++.|++++|
T Consensus 82 ~d--~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l~ 158 (172)
T 2erx_A 82 YS--ITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCA-FMETSAKLNHNVKELF 158 (172)
T ss_dssp EE--TTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCE-EEECBTTTTBSHHHHH
T ss_pred EE--CcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCe-EEEecCCCCcCHHHHH
Confidence 77 66654 222211 1 1368999999999999887777778889999999985 88899 899999999
Q ss_pred HHHHHHHcCCC
Q psy3301 544 VKLATMAAFPR 554 (608)
Q Consensus 544 ~~l~~~a~~p~ 554 (608)
..|++.+..++
T Consensus 159 ~~l~~~~~~~~ 169 (172)
T 2erx_A 159 QELLNLEKRRT 169 (172)
T ss_dssp HHHHHTCCSSC
T ss_pred HHHHHHHhhhh
Confidence 99998765443
No 258
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated, SEN membrane targeting, EF-hand, cell projection, cilium; 2.00A {Trypanosoma cruzi}
Probab=99.61 E-value=1.1e-15 Score=148.05 Aligned_cols=145 Identities=16% Similarity=0.118 Sum_probs=119.7
Q ss_pred cChHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHH---------HHhcCCCccCCCCcchh
Q psy3301 168 ELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVI---------RKNINDGVSANNCITLN 238 (608)
Q Consensus 168 ~l~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~---------~~~~~~~~~~~~~i~~~ 238 (608)
.++++....++++|..+|.|++|.|+.+|+..+++..+|..++.+++..++..+ +.+ ++|.|+|+
T Consensus 41 ~ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~d------~~g~I~~~ 114 (219)
T 3cs1_A 41 EKTAEAKQRRIELFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKLE------NKGSEDFV 114 (219)
T ss_dssp SSSHHHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHTTCGGGTCSCHHHHHHHHHHHHHHHHHHHH------TSCCCSSB
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhhhhccC------CCCcCCHH
Confidence 467788999999999999999999999999999887679888888888776543 224 68999999
Q ss_pred hHHHHHHHHHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHH
Q psy3301 239 GFLFLHNLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQ 318 (608)
Q Consensus 239 ~F~~l~~~~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El 318 (608)
+|+.++...... ...+.++.+|+.||+|++|+|+.+||
T Consensus 115 EF~~~~~~~~~~------------------------------------------~~~~~l~~~F~~~D~d~~G~Is~~El 152 (219)
T 3cs1_A 115 EFLEFRLMLCYI------------------------------------------YDFFELTVMFDEIDASGNMLVDEEEF 152 (219)
T ss_dssp CHHHHHHHHHHH------------------------------------------HHHHHHHHHHHTTCSSSSSEEEHHHH
T ss_pred HHHHHHHHHhcc------------------------------------------chHHHHHHHHHHHCCCCCCcCcHHHH
Confidence 999765322110 11457899999999999999999999
Q ss_pred HHhhccCCC-CCCCCCccccccceecCCCCccchhhHHhHhhh
Q psy3301 319 ARLFSLCPP-ECPPWTDREMRAMVATNSKGWITMQGFLCYWIL 360 (608)
Q Consensus 319 ~~~~~~~~~-~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~ 360 (608)
+.++..+|. ...+.++..++..+|.|++|.|+|+||+..+.-
T Consensus 153 ~~~l~~~g~~~~~~~e~~~l~~~~D~d~dG~I~~~EF~~~~~~ 195 (219)
T 3cs1_A 153 KRAVPKLEAWGAKVEDPAALFKELDKNGTGSVTFDEFAAWASA 195 (219)
T ss_dssp HHHHHHHHHHTCCCSCHHHHHHHHCTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHhcccCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHH
Confidence 999988763 356667899999999999999999999987654
No 259
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.60 E-value=1.7e-15 Score=142.71 Aligned_cols=140 Identities=18% Similarity=0.267 Sum_probs=97.4
Q ss_pred ceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceE-------ecceEeCCcceeEeeeeccccc------
Q psy3301 408 NVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYT-------INTTTVYGQEKYLVLKEILVRD------ 474 (608)
Q Consensus 408 ~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~-------i~~~~v~Gqe~~~~l~~~~~~~------ 474 (608)
..+||+|+|++|||||||+++++++.+...+.++.+. .+...+. +.-++++|+++|..++..+++.
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 98 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEE
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccce-EEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEE
Confidence 4589999999999999999999999988777655544 2222222 3334559999998888877765
Q ss_pred ccccCCCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHH
Q psy3301 475 EQLPVLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVF 543 (608)
Q Consensus 475 v~d~~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F 543 (608)
+|| +++.. ..+. .+....++|+++|+||+|+.. +++..++..+++++++++ ++++| ++.|++++|
T Consensus 99 v~d--~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l~ 174 (190)
T 3con_A 99 VFA--INNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIP-FIETSAKTRQGVEDAF 174 (190)
T ss_dssp EEE--TTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCC-EEECCTTTCTTHHHHH
T ss_pred EEE--CcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCe-EEEEeCCCCCCHHHHH
Confidence 777 66654 2222 222235899999999999986 556678899999999985 88999 899999999
Q ss_pred HHHHHHHcC
Q psy3301 544 VKLATMAAF 552 (608)
Q Consensus 544 ~~l~~~a~~ 552 (608)
..|++.+..
T Consensus 175 ~~l~~~~~~ 183 (190)
T 3con_A 175 YTLVREIRQ 183 (190)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988753
No 260
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB: 2scp_A
Probab=99.60 E-value=6.5e-16 Score=143.21 Aligned_cols=147 Identities=16% Similarity=0.214 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccC----CCCChhh-HHHHHHHHHHhc--CCCccCCCCcchhhHHHH
Q psy3301 171 PECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFD----APLSRDS-LEDVKIVIRKNI--NDGVSANNCITLNGFLFL 243 (608)
Q Consensus 171 ~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g----~~~~~~e-l~~i~~~~~~~~--~~~~~~~~~i~~~~F~~l 243 (608)
++.++.|+++|..+|.|++|.|+.+|+..+++. ++ ..++..+ +..+....-... ..+ ++|.|+|++|+.+
T Consensus 2 ~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~-~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~D--~~g~i~~~EF~~~ 78 (174)
T 1q80_A 2 DLWVQKMKTYFNRIDFDKDGAITRMDFESMAER-FAKESEMKAEHAKVLMDSLTGVWDNFLTAVA--GGKGIDETTFINS 78 (174)
T ss_dssp HHHHHHHHHHHHHHCTTCSSEESHHHHHHHHHH-HHHHSSCCTTHHHHHHHHHHHHHHHTGGGTT--TTSCEEHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCcEeHHHHHHHHHH-HHHHhCCCCCcHHHHHHHHHHHHHHHHHhcC--CCCeEcHHHHHHH
Confidence 567889999999999999999999999999887 45 7888777 654332211110 011 3899999999987
Q ss_pred HHHHHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhc
Q psy3301 244 HNLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFS 323 (608)
Q Consensus 244 ~~~~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~ 323 (608)
+....... .......+.++.+|+.||+|++|+|+.+||+.++.
T Consensus 79 ~~~~~~~~-------------------------------------~~~~~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~ 121 (174)
T 1q80_A 79 MKEMVKNP-------------------------------------EAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFG 121 (174)
T ss_dssp HHHHTTST-------------------------------------TCHHHHHTHHHHHHHHHCTTSSSSBCHHHHHHHHH
T ss_pred HHHHcCcc-------------------------------------cHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Confidence 65432210 11122346789999999999999999999999999
Q ss_pred cCCCCCCCCCccccccceecCCCCccchhhHHhHhh
Q psy3301 324 LCPPECPPWTDREMRAMVATNSKGWITMQGFLCYWI 359 (608)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~ 359 (608)
..| ..+.+...+++.+|.|++|.|+|+||+..+.
T Consensus 122 ~~g--~~~~~~~~~~~~~D~d~dg~i~~~ef~~~~~ 155 (174)
T 1q80_A 122 MLG--LDKTMAPASFDAIDTNNDGLLSLEEFVIAGS 155 (174)
T ss_dssp HHT--CCGGGHHHHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred HcC--CCHHHHHHHHHHhCCCCCceEeHHHHHHHHH
Confidence 887 6677788999999999999999999999875
No 261
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.60 E-value=3.3e-15 Score=147.30 Aligned_cols=120 Identities=15% Similarity=0.122 Sum_probs=77.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCCc-CCCC-CcceEecCccCCCceeEEEEeCCCC--------CCChHHHHH
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPEL-VPSK-AEEITIPPDVTPEMVPTHIVDYSEV--------DQTVDELTE 76 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~-~~~~-~~~~~i~~~~~~~~~~~~i~Dt~G~--------~~~~~~~~~ 76 (608)
....+||+|+|.+|||||||+|+|++..+... ..+. .+.......+...+..+.||||||. +.+...+..
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~ 97 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGH 97 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHH
Confidence 34679999999999999999999999886543 2221 1222222233445788999999997 444444444
Q ss_pred HH----HhcCcEEEEEEcCChhhHHHHHHhHHHHHhhh--ccCCCCcEEEEEeCcCCCC
Q psy3301 77 EI----QKAHVICLVYSVVDDASIDRLSSHWLPFLRNC--LVDTCLPIVLVGNKVDLVD 129 (608)
Q Consensus 77 ~~----~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~--~~~~~~piilv~nK~Dl~~ 129 (608)
.+ +.+|++|+|+|+++....+. .++..+... ....+.|+|||+||+|+..
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~~~~---~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~ 153 (247)
T 3lxw_A 98 CYLLSAPGPHALLLVTQLGRFTAQDQ---QAVRQVRDMFGEDVLKWMVIVFTRKEDLAG 153 (247)
T ss_dssp HHHHHTTCCSEEEEEEETTBCCHHHH---HHHHHHHHHHCGGGGGGEEEEEECGGGGTT
T ss_pred HHHhcCCCCCEEEEEEeCCCCCHHHH---HHHHHHHHHhChhhhccEEEEEEchHhcCC
Confidence 44 89999999999985322221 223333321 2223689999999999854
No 262
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein; 1.50A {Streptomyces coelicolor} PDB: 3aka_A
Probab=99.60 E-value=1.4e-15 Score=139.56 Aligned_cols=144 Identities=16% Similarity=0.225 Sum_probs=115.9
Q ss_pred HHHHHHHHHhccCCCCCccCHHHHHHHhhc---ccCCCCChhhHHHHH-----------HHHHHhcCCCccCCCCcchhh
Q psy3301 174 IKALTRIFKVCDLDNDNLLSDKELNAFQRR---CFDAPLSRDSLEDVK-----------IVIRKNINDGVSANNCITLNG 239 (608)
Q Consensus 174 ~~~L~~~f~~~D~d~dg~l~~~El~~~~~~---~~g~~~~~~el~~i~-----------~~~~~~~~~~~~~~~~i~~~~ 239 (608)
++.++++|..+|.|++|.|+.+|+..++.. .+|..++..+++.+. ..++.+ ++|.|++++
T Consensus 3 ~~~l~~~F~~~D~d~dG~i~~~E~~~~l~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~f~~~D~d------~~g~i~~~e 76 (166)
T 3akb_A 3 ERRIAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGIADRD------GDQRITREE 76 (166)
T ss_dssp HHHHHHHHHHHCTTCSSEECHHHHHHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHHHHCTT------SSSCEEHHH
T ss_pred HHHHHHHHhHHcCCCCCCcCHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHhCCC------CCCcCcHHH
Confidence 567999999999999999999999998532 368899998888764 666666 789999999
Q ss_pred HHHHHHHHHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHH
Q psy3301 240 FLFLHNLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQA 319 (608)
Q Consensus 240 F~~l~~~~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~ 319 (608)
|+.++........ ..+.....+.++.+|+.||+|++|+|+.+|++
T Consensus 77 f~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~F~~~D~d~~G~i~~~E~~ 121 (166)
T 3akb_A 77 FVTGAVKRLRDKP-----------------------------------DRFAEMARPFLHAALGVADTDGDGAVTVADTA 121 (166)
T ss_dssp HHHTHHHHHHHSH-----------------------------------HHHHHHHHHHHHHHHHHHCSSSSSCCBHHHHH
T ss_pred HHHHHHHHhccCc-----------------------------------cchHHHHHHHHHHHHHHhCCCCCCcCCHHHHH
Confidence 9977655432210 01112224568999999999999999999999
Q ss_pred HhhccCCCCCCCCCccccccceecCCCCccchhhHHhHhhh
Q psy3301 320 RLFSLCPPECPPWTDREMRAMVATNSKGWITMQGFLCYWIL 360 (608)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~ 360 (608)
.++...| ..+.+...+++.+|.|++|.|+|+||+..+.-
T Consensus 122 ~~l~~~~--~~~~~~~~~~~~~D~d~dg~i~~~ef~~~~~~ 160 (166)
T 3akb_A 122 RALTAFG--VPEDLARQAAAALDTDGDGKVGETEIVPAFAR 160 (166)
T ss_dssp HHHHHTT--CCHHHHHHHHHHHCTTCSSBCCHHHHHHHHHH
T ss_pred HHHHHhC--CCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 9999987 55566788999999999999999999988743
No 263
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.59 E-value=1.6e-15 Score=138.88 Aligned_cols=138 Identities=18% Similarity=0.248 Sum_probs=103.7
Q ss_pred eEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceE-------ecceEeCCcceeEeeeeccccc------c
Q psy3301 409 VYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYT-------INTTTVYGQEKYLVLKEILVRD------E 475 (608)
Q Consensus 409 ~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~-------i~~~~v~Gqe~~~~l~~~~~~~------v 475 (608)
.+||+|+|++|||||||+++++++.+...+.++.+. .+...+. +.-++.+|+++|..++..+++. +
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIED-SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccce-EEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 379999999999999999999999988777655543 2222222 3334558999888777766654 6
Q ss_pred cccCCCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHH
Q psy3301 476 QLPVLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFV 544 (608)
Q Consensus 476 ~d~~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~ 544 (608)
|| +++.. .... ......++|+++|+||+|+.. +++..++..+++++++++ ++++| ++.|++++|.
T Consensus 82 ~d--~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l~~ 157 (166)
T 2ce2_X 82 FA--INNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFY 157 (166)
T ss_dssp EE--TTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCC-EEEECTTTCTTHHHHHH
T ss_pred EE--CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCe-EEEecCCCCCCHHHHHH
Confidence 77 66544 2222 222345899999999999986 456677889999999986 89999 8999999999
Q ss_pred HHHHHHc
Q psy3301 545 KLATMAA 551 (608)
Q Consensus 545 ~l~~~a~ 551 (608)
.|++.+.
T Consensus 158 ~l~~~~~ 164 (166)
T 2ce2_X 158 TLVREIR 164 (166)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998763
No 264
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.59 E-value=1.1e-15 Score=146.08 Aligned_cols=142 Identities=18% Similarity=0.243 Sum_probs=106.2
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCc-------eEecceEeCCcceeEeeeeccccc-----
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPP-------YTINTTTVYGQEKYLVLKEILVRD----- 474 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~-------~~i~~~~v~Gqe~~~~l~~~~~~~----- 474 (608)
+..+||+|+|++|||||||+++|+++.+...+.++.+.+.+... +.+.-++++|+++|..++..+++.
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCV 85 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEE
Confidence 45799999999999999999999999998877766654222222 334445669999998888877766
Q ss_pred -ccccCCCCcc--cccccc-------c---CCCCCcEEEEEeCCCCCcchhcccccHHHHHH-HcCCCCceEEc--cCCC
Q psy3301 475 -EQLPVLLPVD--VDCDKY-------F---STSKIPVMLVAGKSDMPRARQDYLMQPDIFCE-THKLSPAHSFS--AANN 538 (608)
Q Consensus 475 -v~d~~l~~~~--~~~~~~-------~---~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~-~~~~~~~~~~S--~~~~ 538 (608)
||| +++.. ..+..| . ...++|+++|+||+||. .+++..+++.++++ ..++ +++++| ++.|
T Consensus 86 ~v~d--~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~g 161 (207)
T 1vg8_A 86 LVFD--VTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNI-PYFETSAKEAIN 161 (207)
T ss_dssp EEEE--TTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSC-CEEECBTTTTBS
T ss_pred EEEE--CCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCc-eEEEEeCCCCCC
Confidence 778 66654 222211 1 12579999999999998 45566678888988 4455 489999 8999
Q ss_pred HHHHHHHHHHHHcC
Q psy3301 539 DREVFVKLATMAAF 552 (608)
Q Consensus 539 v~e~F~~l~~~a~~ 552 (608)
++++|..|++.+..
T Consensus 162 i~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 162 VEQAFQTIARNALK 175 (207)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998754
No 265
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.59 E-value=7.8e-16 Score=167.34 Aligned_cols=118 Identities=12% Similarity=0.021 Sum_probs=85.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCCc------------------C----CCCCcceEecCccCCCceeEEEEeC
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPEL------------------V----PSKAEEITIPPDVTPEMVPTHIVDY 64 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~------------------~----~~~~~~~~i~~~~~~~~~~~~i~Dt 64 (608)
..+..+|+|+|++|+|||||+++|+....... . ....+.......+...++.++||||
T Consensus 10 ~~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDT 89 (528)
T 3tr5_A 10 TAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDT 89 (528)
T ss_dssp HHTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECC
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEEC
Confidence 34567999999999999999999973221110 0 0000111111123445788999999
Q ss_pred CCCCCChHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCC
Q psy3301 65 SEVDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDY 130 (608)
Q Consensus 65 ~G~~~~~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 130 (608)
||+++|......+++.+|++|+|+|+++..+.+... .|.. +. ..++|+++|+||+|+...
T Consensus 90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~-~~~~-~~----~~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIK-LMEV-CR----LRHTPIMTFINKMDRDTR 149 (528)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHH-HHHH-HH----TTTCCEEEEEECTTSCCS
T ss_pred CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHH-HH----HcCCCEEEEEeCCCCccc
Confidence 999999999999999999999999999987777765 4543 33 247899999999999643
No 266
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.59 E-value=2.9e-16 Score=168.55 Aligned_cols=137 Identities=20% Similarity=0.185 Sum_probs=101.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLV 87 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV 87 (608)
++..+|+++|+.++|||||+++|.+..+.....+..+.......+...+..+.||||||++.|...+...+..+|++++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILV 81 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLV 81 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEE
Confidence 35679999999999999999999986554332222222111223334556789999999999988887788999999999
Q ss_pred EEcCC---hhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------------cccCcccCc
Q psy3301 88 YSVVD---DASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------------VESSAKTLK 141 (608)
Q Consensus 88 ~d~~~---~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------------~e~SAk~~~ 141 (608)
+|+++ +++.+.+. .+. ..++|+++++||+|+..... +++||++|.
T Consensus 82 Vda~~g~~~qT~e~l~-----~~~----~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~ 152 (501)
T 1zo1_I 82 VAADDGVMPQTIEAIQ-----HAK----AAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGT 152 (501)
T ss_dssp EETTTBSCTTTHHHHH-----HHH----HTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCT
T ss_pred eecccCccHHHHHHHH-----HHH----hcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeecc
Confidence 99988 45554432 222 24789999999999964210 789999999
Q ss_pred CHHHHHHHHHHH
Q psy3301 142 NISEMFYYAQKA 153 (608)
Q Consensus 142 ~i~~lf~~l~~~ 153 (608)
||+++++++...
T Consensus 153 gI~eLle~I~~~ 164 (501)
T 1zo1_I 153 GIDELLDAILLQ 164 (501)
T ss_dssp TCTTHHHHTTTT
T ss_pred Ccchhhhhhhhh
Confidence 999999998653
No 267
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens} SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B* 1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Probab=99.59 E-value=1.2e-16 Score=144.70 Aligned_cols=147 Identities=14% Similarity=0.156 Sum_probs=111.3
Q ss_pred cChHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHH
Q psy3301 168 ELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLF 247 (608)
Q Consensus 168 ~l~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~ 247 (608)
.++++....++++|..+|.|++|.|+..|+..+++. +|..++..++..++..++.+. .++|.|+|++|+.++...
T Consensus 3 ~ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~-~g~~~~~~~~~~l~~~~d~~~----~~~g~i~~~eF~~~~~~~ 77 (151)
T 1w7j_B 3 EFNKDQLEEFKEAFELFDRVGDGKILYSQCGDVMRA-LGQNPTNAEVLKVLGNPKSDE----LKSRRVDFETFLPMLQAV 77 (151)
T ss_dssp --------CHHHHHHHHCCSSSSEEESTTHHHHHHH-TTCCCCHHHHHHHTTCCCHHH----HTTCEEEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH-cCCCCCHHHHHHHHHHhCcCc----CCCCcCcHHHHHHHHHHH
Confidence 356677888999999999999999999999999987 799999999988887665430 037899999999876543
Q ss_pred HhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCCC
Q psy3301 248 MQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPP 327 (608)
Q Consensus 248 ~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~~ 327 (608)
.... .+...+.++.+|+.||+|++|+|+.+||+.++..+|.
T Consensus 78 ~~~~---------------------------------------~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~ 118 (151)
T 1w7j_B 78 AKNR---------------------------------------GQGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTTLGE 118 (151)
T ss_dssp CC-----------------------------------------------CCHHHHHTTCTTSSSEEEHHHHHHHHHHSSS
T ss_pred hccC---------------------------------------CCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCC
Confidence 2110 0011344677899999999999999999999999985
Q ss_pred CCCCCCccccccceecCCCCccchhhHHhHhh
Q psy3301 328 ECPPWTDREMRAMVATNSKGWITMQGFLCYWI 359 (608)
Q Consensus 328 ~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~ 359 (608)
...+.+...+++.+| |++|.|+|+||+..+.
T Consensus 119 ~~~~~~~~~~~~~~d-~~dg~i~~~eF~~~~~ 149 (151)
T 1w7j_B 119 KMTEEEVETVLAGHE-DSNGCINYEAFLKHIL 149 (151)
T ss_dssp CCCHHHHHHHHTTCC-CTTSEEEHHHHHHHTC
T ss_pred CCCHHHHHHHHHhcc-CCCCeEeHHHHHHHHh
Confidence 455556788999999 9999999999998763
No 268
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S 3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Probab=99.59 E-value=6.4e-16 Score=143.58 Aligned_cols=132 Identities=14% Similarity=0.237 Sum_probs=114.3
Q ss_pred HHHHHHHHHHhccCCCCCccCHHHHHHHhhcccC-------CCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHH
Q psy3301 173 CIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFD-------APLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHN 245 (608)
Q Consensus 173 ~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g-------~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~ 245 (608)
..+.++++|..+| |++|.|+.+|+..+++..+| .+++.++++.++..++.+ ++|.|+|++|+.++.
T Consensus 2 ~~~~l~~~F~~~D-d~~G~i~~~el~~~l~~~~g~~~~~~~~~~~~~~~~~l~~~~D~~------~~g~i~~~eF~~~~~ 74 (173)
T 1alv_A 2 EVRQFRRLFAQLA-GDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSD------TTGKLGFEEFKYLWN 74 (173)
T ss_dssp HHHHHHHHHHHHH-GGGTSBCHHHHHHHHHHHHHTCSTTCCSCCCHHHHHHHHHHHCTT------CSSSBCHHHHHHHHH
T ss_pred chhHHHHHHHHHh-CCCCCcCHHHHHHHHHHhhhcccccccCCCCHHHHHHHHHHHcCC------CCCccCHHHHHHHHH
Confidence 3568999999999 99999999999999998546 778899999999999988 899999999997754
Q ss_pred HHHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccC
Q psy3301 246 LFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLC 325 (608)
Q Consensus 246 ~~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~ 325 (608)
. .+.++.+|+.||+|++|.|+.+|++.++..+
T Consensus 75 ~------------------------------------------------~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~ 106 (173)
T 1alv_A 75 N------------------------------------------------IKKWQAIYKQFDVDRSGTIGSSELPGAFEAA 106 (173)
T ss_dssp H------------------------------------------------HHHHHHHHHHHCTTCCSSBCTTTHHHHHHHH
T ss_pred H------------------------------------------------HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHc
Confidence 2 2568889999999999999999999999988
Q ss_pred CCCCCCCCccccccceecCCCCccchhhHHhHhhh
Q psy3301 326 PPECPPWTDREMRAMVATNSKGWITMQGFLCYWIL 360 (608)
Q Consensus 326 ~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~ 360 (608)
|....+.+...+++.++ |++|.|+|+||+..+.-
T Consensus 107 g~~~~~~~~~~~~~~~d-d~dg~i~~~eF~~~~~~ 140 (173)
T 1alv_A 107 GFHLNEHLYSMIIRRYS-DEGGNMDFDNFISCLVR 140 (173)
T ss_dssp TCCCCHHHHHHHHHHHT-CSSSCBCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhc-CCCCcCcHHHHHHHHHH
Confidence 74444455677888888 99999999999998864
No 269
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.58 E-value=3.4e-16 Score=149.64 Aligned_cols=143 Identities=18% Similarity=0.182 Sum_probs=74.7
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcC--CCCCCCCCCCCCCcCCCceE---------ecceEeCCcceeEeeeeccccc-
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRK--HHDSSKTSITSPVECDPPYT---------INTTTVYGQEKYLVLKEILVRD- 474 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~--~~~~~~~~t~~~~~~~~~~~---------i~~~~v~Gqe~~~~l~~~~~~~- 474 (608)
...+||+|+|++|||||||+++|+++ .+...+.+|.+.+.+...+. +.-++++|+++|..++..+++.
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 45699999999999999999999999 88877777776422233333 3334459999988888777766
Q ss_pred -----ccccCCCCcc--cccccc------cCC---CCCcEEEEEeCCCCCc-chhcccccHHHHHHHcCCCCceEEc--c
Q psy3301 475 -----EQLPVLLPVD--VDCDKY------FST---SKIPVMLVAGKSDMPR-ARQDYLMQPDIFCETHKLSPAHSFS--A 535 (608)
Q Consensus 475 -----v~d~~l~~~~--~~~~~~------~~~---~~~p~ilVgnK~DL~~-~~~~~~~~~~~~~~~~~~~~~~~~S--~ 535 (608)
||| +++.. +.+..| ... .++|+++||||+|+.+ .+++..+++.+++++++++ ++++| +
T Consensus 98 d~~i~v~d--~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~ 174 (208)
T 2yc2_C 98 YYAILVFD--VSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLD-FFDVSANP 174 (208)
T ss_dssp CEEEEEEE--TTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCE-EEECCC--
T ss_pred cEEEEEEE--CCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCE-EEEeccCC
Confidence 788 77654 222211 122 6899999999999988 7788888999999999975 88899 8
Q ss_pred -CCCHHHHHHHHHHHHcC
Q psy3301 536 -ANNDREVFVKLATMAAF 552 (608)
Q Consensus 536 -~~~v~e~F~~l~~~a~~ 552 (608)
+.|++++|..|++.+..
T Consensus 175 ~~~gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 175 PGKDADAPFLSIATTFYR 192 (208)
T ss_dssp -----CHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHH
Confidence 99999999999997754
No 270
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand, phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Probab=99.58 E-value=1.7e-15 Score=144.41 Aligned_cols=143 Identities=19% Similarity=0.273 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHHHhc
Q psy3301 171 PECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQR 250 (608)
Q Consensus 171 ~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~~~~ 250 (608)
......++++|..+|.|++|.|+.+|+..+++. +|..++.++++.++..++.+ ++|.|+|++|+.++.
T Consensus 33 ~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~D~d------~dg~i~~~ef~~~~~----- 100 (204)
T 3e3r_A 33 ASGIQGLARFFRQLDRDGSRSLDADEFRQGLAK-LGLVLDQAEAEGVCRKWDRN------GSGTLDLEEFLRALR----- 100 (204)
T ss_dssp -------CHHHHHHCTTCCSSBCHHHHHHHHHT-TTCCCCHHHHHHHHHHHCTT------CSSSBCHHHHHHHTS-----
T ss_pred chhHHHHHHHHHHHccCCCCCcCHHHHHHHHHH-cCCCCCHHHHHHHHHHhccC------CCCcCcHHHHHHHHH-----
Confidence 355678999999999999999999999999997 69999999999999999988 899999999996632
Q ss_pred CCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCC----
Q psy3301 251 GRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCP---- 326 (608)
Q Consensus 251 ~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~---- 326 (608)
........+.++.+|+.||.|++|+|+.+||+.++...+
T Consensus 101 -------------------------------------~~~~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~ 143 (204)
T 3e3r_A 101 -------------------------------------PPMSQAREAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKV 143 (204)
T ss_dssp -------------------------------------CCCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHCCCTTCHHH
T ss_pred -------------------------------------hhcCchHHHHHHHHHHHhCcCCCCeEeHHHHHHHHccccCCcc
Confidence 012233457899999999999999999999999998653
Q ss_pred ---CCCCCCCccccccceec-CCCCccchhhHHhHhhhhh
Q psy3301 327 ---PECPPWTDREMRAMVAT-NSKGWITMQGFLCYWILTT 362 (608)
Q Consensus 327 ---~~~~~~~~~~~~~~~d~-~~~g~i~~~ef~~~w~~~~ 362 (608)
..........+++.+|. |++|.|+|+||+..+.-..
T Consensus 144 ~~~~~~~~~~~~~~~~~~D~~d~dg~Is~~EF~~~~~~~~ 183 (204)
T 3e3r_A 144 RSGEWTEDEVLRRFLDNFDSSEKDGQVTLAEFQDYYSGVS 183 (204)
T ss_dssp HTTSSCHHHHHHHHHHHHSCSSCCSCEEHHHHHHHHHHHH
T ss_pred ccCCCChHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHcC
Confidence 11111235678888998 9999999999999987665
No 271
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT calmodulin chimera; calcium sensor, fluorescent protein; HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A* 3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A* 3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Probab=99.58 E-value=8.9e-16 Score=161.80 Aligned_cols=145 Identities=22% Similarity=0.314 Sum_probs=123.1
Q ss_pred ccChHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHH
Q psy3301 167 QELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNL 246 (608)
Q Consensus 167 ~~l~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~ 246 (608)
..++++..+.++++|..+|.|++|.|+.+||..+++. +|..++.++++.+++.++.+ ++|.|+|+||+.++..
T Consensus 304 ~~ls~eei~el~~~F~~fD~D~dG~Is~~EL~~~L~~-lg~~~s~eel~~Lf~~~D~D------gdG~IsfeEFl~ll~~ 376 (450)
T 3sg6_A 304 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRS-LGQNPTEAELQDMINEVDAD------GNGTIDFPEFLTMMAR 376 (450)
T ss_dssp -CCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHH-TTCCCCHHHHHHHHHTTCTT------SSSSEEHHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH-hCCCCCHHHHHHHHHHhccC------CCCcccHHHHHHHHHh
Confidence 4677788899999999999999999999999999997 78999999999999999888 8999999999977643
Q ss_pred HHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCC
Q psy3301 247 FMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCP 326 (608)
Q Consensus 247 ~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~ 326 (608)
.... ....+.++.+|+.||+|++|+|+.+||+.++..+|
T Consensus 377 ~~~~-----------------------------------------~~~~e~l~~aFk~fD~D~dG~Is~eELr~~L~~lG 415 (450)
T 3sg6_A 377 KMKD-----------------------------------------TDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLG 415 (450)
T ss_dssp -----------------------------------------------CHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHT
T ss_pred hccc-----------------------------------------cchhhHHHHHHHHhCCCCCCeEeHHHHHHHHHHhC
Confidence 2111 01135688999999999999999999999999987
Q ss_pred CCCCCCCccccccceecCCCCccchhhHHhHhh
Q psy3301 327 PECPPWTDREMRAMVATNSKGWITMQGFLCYWI 359 (608)
Q Consensus 327 ~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~ 359 (608)
......+...++..+|.|+||.|+|+||++.+.
T Consensus 416 ~~ls~eei~~Lf~~~D~D~DG~IsfdEFv~~L~ 448 (450)
T 3sg6_A 416 EKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT 448 (450)
T ss_dssp CCCCHHHHHHHHHHHCTTSSSSEEHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHh
Confidence 545555578889999999999999999998764
No 272
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}
Probab=99.58 E-value=1.9e-15 Score=141.47 Aligned_cols=135 Identities=20% Similarity=0.227 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHHHhc
Q psy3301 171 PECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQR 250 (608)
Q Consensus 171 ~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~~~~ 250 (608)
++....++++|..+|.|++|.|+..|+..+++. +|. ++.++..++..++.+ ++|.|+|++|+.++...
T Consensus 35 ~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~-~g~--~~~~~~~~~~~~D~d------~~g~i~~~Ef~~~~~~~--- 102 (180)
T 3mse_B 35 NNHIKYINELFYKLDTNHNGSLSHREIYTVLAS-VGI--KKWDINRILQALDIN------DRGNITYTEFMAGCYRW--- 102 (180)
T ss_dssp HHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHH-TTC--CHHHHHHHHHHHCTT------CCSEECHHHHHHHHSCC---
T ss_pred HHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHH-cCC--CHHHHHHHHHHhCCC------CCCcCcHHHHHHHHHhc---
Confidence 677889999999999999999999999999987 564 468899999999888 89999999999664210
Q ss_pred CCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCCCCCC
Q psy3301 251 GRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPECP 330 (608)
Q Consensus 251 ~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~~~~~ 330 (608)
.....+.++.+|+.||+|++|+|+.+||+.++...+ ..
T Consensus 103 ----------------------------------------~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~--~~ 140 (180)
T 3mse_B 103 ----------------------------------------KNIESTFLKAAFNKIDKDEDGYISKSDIVSLVHDKV--LD 140 (180)
T ss_dssp ----------------------------------------TTC--CHHHHHHHHHCTTCSSCBCHHHHHHHTTTSS--CC
T ss_pred ----------------------------------------ccCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHcCCC--CC
Confidence 000024688899999999999999999999999544 55
Q ss_pred CCCccccccceecCCC--------CccchhhHHhHhh
Q psy3301 331 PWTDREMRAMVATNSK--------GWITMQGFLCYWI 359 (608)
Q Consensus 331 ~~~~~~~~~~~d~~~~--------g~i~~~ef~~~w~ 359 (608)
+.+..+++..+|.|++ |.|+|+||+..+.
T Consensus 141 ~~~~~~~~~~~d~~~d~~~~~~~~G~i~~~eF~~~l~ 177 (180)
T 3mse_B 141 NNDIDNFFLSVHSIKKGIPREHIINKISFQEFKDYML 177 (180)
T ss_dssp HHHHHHHHHHHHTC---------CCCBCHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccCcccccccCCeeeHHHHHHHHH
Confidence 5667889999999988 9999999998764
No 273
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B* 2p6b_B 1aui_B 1m63_B* 1tco_B*
Probab=99.58 E-value=8.6e-16 Score=139.43 Aligned_cols=139 Identities=20% Similarity=0.211 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHHHhc
Q psy3301 171 PECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQR 250 (608)
Q Consensus 171 ~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~~~~ 250 (608)
++.++.++++|..+|.|++|.|+.+|+ ..+.. .+.. .++..++..++.+ ++|.|+|++|+.++.....
T Consensus 2 ~~~~~~l~~~F~~~D~d~~G~i~~~el-~~l~~-~~~~---~~~~~~~~~~D~~------~~g~i~~~ef~~~~~~~~~- 69 (155)
T 3ll8_B 2 ADEIKRLGKRFKKLDLDNSGSLSVEEF-MSLPE-LQQN---PLVQRVIDIFDTD------GNGEVDFKEFIEGVSQFSV- 69 (155)
T ss_dssp CHHHHHHHHHHHHHCTTCSSSBCHHHH-TTSGG-GTTC---TTHHHHHHHHCTT------CSSSBCHHHHHHHHGGGCS-
T ss_pred HHHHHHHHHHHHHhCcCCCCeEcHHHH-HHhhc-cccc---hHHHHHHHHHCCC------CCCcCcHHHHHHHHHHHcc-
Confidence 467789999999999999999999999 44443 3433 3788899999888 7999999999977532110
Q ss_pred CCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhcc-CCCCC
Q psy3301 251 GRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSL-CPPEC 329 (608)
Q Consensus 251 ~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~-~~~~~ 329 (608)
.....+.++.+|+.||+|++|+|+.+|++.++.. .|...
T Consensus 70 ----------------------------------------~~~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~ 109 (155)
T 3ll8_B 70 ----------------------------------------KGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNL 109 (155)
T ss_dssp ----------------------------------------SCCHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHHHGGGS
T ss_pred ----------------------------------------cCCHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhccCC
Confidence 0112467899999999999999999999999988 45334
Q ss_pred CCCCccccccc----eecCCCCccchhhHHhHhhhh
Q psy3301 330 PPWTDREMRAM----VATNSKGWITMQGFLCYWILT 361 (608)
Q Consensus 330 ~~~~~~~~~~~----~d~~~~g~i~~~ef~~~w~~~ 361 (608)
.+.+...++.. +|.|++|.|+|+||+..+.-.
T Consensus 110 ~~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~~ 145 (155)
T 3ll8_B 110 KDTQLQQIVDKTIINADKDGDGRISFEEFCAVVGGL 145 (155)
T ss_dssp CHHHHHHHHHHHHHHHCTTSSSSBCHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHhcc
Confidence 44445677777 999999999999999987654
No 274
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.58 E-value=4.8e-16 Score=150.15 Aligned_cols=145 Identities=18% Similarity=0.162 Sum_probs=109.6
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCc--------eEecceEeCCcceeEeeeeccccc----
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPP--------YTINTTTVYGQEKYLVLKEILVRD---- 474 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~--------~~i~~~~v~Gqe~~~~l~~~~~~~---- 474 (608)
...+||+|+|++|||||||+++++++.+...+.++.+....... +.+.-++++|+++|..++..+++.
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGA 88 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEE
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEE
Confidence 35699999999999999999999999888776666654211111 344555669999999888887766
Q ss_pred --ccccCCCCcc--cccccc------cCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHH
Q psy3301 475 --EQLPVLLPVD--VDCDKY------FSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREV 542 (608)
Q Consensus 475 --v~d~~l~~~~--~~~~~~------~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~ 542 (608)
||| +++.. ..+..| ....++|+++|+||+||.+.+++..+++.++++.++++ ++++| ++.|++++
T Consensus 89 i~v~d--~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~gv~~l 165 (218)
T 4djt_A 89 ILFFD--VTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYE-YFEISAKTAHNFGLP 165 (218)
T ss_dssp EEEEE--TTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCE-EEEEBTTTTBTTTHH
T ss_pred EEEEe--CCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCc-EEEEecCCCCCHHHH
Confidence 788 77654 222211 22356999999999999987788888899999999986 89999 89999999
Q ss_pred HHHHHHHHcCCC
Q psy3301 543 FVKLATMAAFPR 554 (608)
Q Consensus 543 F~~l~~~a~~p~ 554 (608)
|..|++.+....
T Consensus 166 ~~~l~~~~~~~~ 177 (218)
T 4djt_A 166 FLHLARIFTGRP 177 (218)
T ss_dssp HHHHHHHHHCCT
T ss_pred HHHHHHHHhccc
Confidence 999999987654
No 275
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.58 E-value=1.6e-16 Score=149.45 Aligned_cols=142 Identities=14% Similarity=0.143 Sum_probs=95.9
Q ss_pred eEEEEEEccCCCchHHHHHHHhcC--CCCCCCCCCCCCCcCC----------CceEecceEeCCcceeEeeeeccccc--
Q psy3301 409 VYVCHVIGNRSTGKTALCQSILRK--HHDSSKTSITSPVECD----------PPYTINTTTVYGQEKYLVLKEILVRD-- 474 (608)
Q Consensus 409 ~~k~~viG~~gvGKTsll~~f~~~--~~~~~~~~t~~~~~~~----------~~~~i~~~~v~Gqe~~~~l~~~~~~~-- 474 (608)
.+||+|+|++|||||||+++|++. .+...+.+|.+.+... ..+.+.-.+.+|+++|..+++.++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 379999999999999999999984 5666666666552211 12333445569999998888777665
Q ss_pred ----ccccCCCCcc---ccccccc-----CCCCCcEEEEEeCCCCCcchhcc---cccHHHHHHHcCCC---CceEEc--
Q psy3301 475 ----EQLPVLLPVD---VDCDKYF-----STSKIPVMLVAGKSDMPRARQDY---LMQPDIFCETHKLS---PAHSFS-- 534 (608)
Q Consensus 475 ----v~d~~l~~~~---~~~~~~~-----~~~~~p~ilVgnK~DL~~~~~~~---~~~~~~~~~~~~~~---~~~~~S-- 534 (608)
+|| +++.. +.+..|+ ..+++|+++||||+|+.+.+++. ...+++++++++++ +++++|
T Consensus 82 ~~i~v~d--~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (184)
T 2zej_A 82 LYLAVYD--LSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNAT 159 (184)
T ss_dssp EEEEEEE--GGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTT
T ss_pred EEEEEEe--CCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecc
Confidence 788 77653 2333221 13589999999999998766543 35567788888875 367888
Q ss_pred cCC-CHHHHHHHHHHHHcC
Q psy3301 535 AAN-NDREVFVKLATMAAF 552 (608)
Q Consensus 535 ~~~-~v~e~F~~l~~~a~~ 552 (608)
++. +++++|..|.+.+..
T Consensus 160 ~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 160 EESDALAKLRKTIINESLN 178 (184)
T ss_dssp SCCHHHHHHHHHHHHHHHC
T ss_pred cCchhHHHHHHHHHHHHhc
Confidence 675 899999999987744
No 276
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR {Schizosaccharomyces pombe} SCOP: a.39.1.5
Probab=99.58 E-value=7.4e-16 Score=137.57 Aligned_cols=134 Identities=13% Similarity=0.141 Sum_probs=109.6
Q ss_pred HHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHHHhcCCCc
Q psy3301 175 KALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQRGRSH 254 (608)
Q Consensus 175 ~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~~~~~~~e 254 (608)
+.++++|..+|.|++|.|+..|+..+++. +|..++.+++..++. + ++|.|+|++|+.++.....
T Consensus 5 ~~l~~~F~~~D~d~~G~i~~~el~~~l~~-~g~~~~~~~~~~~~~----~------~~g~i~~~eF~~~~~~~~~----- 68 (140)
T 1ggw_A 5 SPYKQAFSLFDRHGTGRIPKTSIGDLLRA-CGQNPTLAEITEIES----T------LPAEVDMEQFLQVLNRPNG----- 68 (140)
T ss_dssp TTTHHHHHHTCSSSSSEECHHHHHHHHHH-TSCCCCHHHHHHHHT----T------SCSSEEHHHHHHHHCTTSS-----
T ss_pred HHHHHHHHHHCCCCCCcCCHHHHHHHHHH-cCCCCCHHHHHHHHh----C------CCCcCcHHHHHHHHHHHhc-----
Confidence 35789999999999999999999999997 688899988888876 4 6899999999976532100
Q ss_pred chhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCCCCCCCCCc
Q psy3301 255 TTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPECPPWTD 334 (608)
Q Consensus 255 ~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~~~~~~~~~ 334 (608)
...+...+.++.+|+.||+|++|+|+.+||+.++..+|....+.+.
T Consensus 69 ----------------------------------~~~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~ 114 (140)
T 1ggw_A 69 ----------------------------------FDMPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEM 114 (140)
T ss_dssp ----------------------------------SSSSCCHHHHHHHHHTTCSSCSSCCCHHHHHHHHHHHHSCSCHHHH
T ss_pred ----------------------------------ccCcccHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCCCHHHH
Confidence 0011124678999999999999999999999999988744455557
Q ss_pred cccccceecCCCCccchhhHHhHhh
Q psy3301 335 REMRAMVATNSKGWITMQGFLCYWI 359 (608)
Q Consensus 335 ~~~~~~~d~~~~g~i~~~ef~~~w~ 359 (608)
..+++.+|. ++|.|+|+||+..+.
T Consensus 115 ~~~~~~~d~-~dg~i~~~eF~~~~~ 138 (140)
T 1ggw_A 115 DELLKGVPV-KDGMVNYHDFVQMIL 138 (140)
T ss_dssp HHHHHHTTC-SSCCSTTTHHHHHHH
T ss_pred HHHHHhccC-CCCcEeHHHHHHHHh
Confidence 888999999 999999999998764
No 277
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.58 E-value=4.9e-15 Score=157.12 Aligned_cols=140 Identities=22% Similarity=0.202 Sum_probs=92.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCC---CCCcCCCCCcceEecCc--------------c------C--C----Cce
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEE---FPELVPSKAEEITIPPD--------------V------T--P----EMV 57 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~---~~~~~~~~~~~~~i~~~--------------~------~--~----~~~ 57 (608)
.+..++|+++|+.++|||||+++|.+.. +.....+. .|+... + . . ...
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~g---iTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~ 81 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRG---ISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLR 81 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------C---CCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCC---cEEEecccccccccccccccccccccccccCccccccc
Confidence 3467999999999999999999999543 22222111 111110 0 0 1 126
Q ss_pred eEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEcCC----hhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-
Q psy3301 58 PTHIVDYSEVDQTVDELTEEIQKAHVICLVYSVVD----DASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST- 132 (608)
Q Consensus 58 ~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~~----~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~- 132 (608)
.+.||||||+++|...+...+..+|++|+|+|+++ +++++.+. .| .. . ...|+++|+||+|+.....
T Consensus 82 ~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~-~~----~~--l-~~~~iivv~NK~Dl~~~~~~ 153 (408)
T 1s0u_A 82 RVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM-AL----EI--L-GIDKIIIVQNKIDLVDEKQA 153 (408)
T ss_dssp EEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH-HH----HH--T-TCCCEEEEEECTTSSCTTTT
T ss_pred EEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH-HH----HH--c-CCCeEEEEEEccCCCCHHHH
Confidence 79999999998887766666777899999999995 45555543 22 21 1 1248999999999975321
Q ss_pred ---------------------cccCcccCcCHHHHHHHHHHHHhCC
Q psy3301 133 ---------------------VESSAKTLKNISEMFYYAQKAVLHP 157 (608)
Q Consensus 133 ---------------------~e~SAk~~~~i~~lf~~l~~~i~~~ 157 (608)
+++||++|.||+++++++.+.+..+
T Consensus 154 ~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~ 199 (408)
T 1s0u_A 154 EENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTP 199 (408)
T ss_dssp TTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 8899999999999999999877544
No 278
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.58 E-value=1.1e-14 Score=159.34 Aligned_cols=67 Identities=16% Similarity=0.199 Sum_probs=56.4
Q ss_pred HhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCCCCCCCCCccccccceecCCCCccchhhHHhHhhhh
Q psy3301 292 DKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPECPPWTDREMRAMVATNSKGWITMQGFLCYWILT 361 (608)
Q Consensus 292 ~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~~ 361 (608)
+..+..+..+|...|. .+|+|+-++.+.+|...+ .+......+...+|.|+||.++.+||.-.+-|.
T Consensus 454 ~~~~~~y~~~F~~~~~-~~g~i~g~~a~~~~~~s~--Lp~~~L~~IW~l~D~~~~g~L~~~eF~~am~Li 520 (550)
T 2qpt_A 454 TKDKSKYDEIFYNLAP-ADGKLSGSKAKTWMVGTK--LPNSVLGRIWKLSDVDRDGMLDDEEFALASHLI 520 (550)
T ss_dssp TTTHHHHHHHHHHTCC-SSSEECHHHHHHHHHHTT--CCHHHHHHHHHHHCSSCSSSEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CCCeecHHHHHHHHHHcC--CCHHHHHHHhcccCCCCCCcCCHHHHHHHHHHH
Confidence 3457889999999995 469999999999999887 554446777789999999999999998776665
No 279
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.58 E-value=1.8e-15 Score=163.28 Aligned_cols=140 Identities=17% Similarity=0.135 Sum_probs=102.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCC-------CCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHh
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEF-------PELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQK 80 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 80 (608)
++.++|+++|+.++|||||+++|++... .....+..+.......+...+..+.||||||+++|...+...+..
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~ 96 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADI 96 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhh
Confidence 4578999999999999999999998761 111111111111111122356789999999999998888899999
Q ss_pred cCcEEEEEEcCC---hhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCC--------------------C---cc
Q psy3301 81 AHVICLVYSVVD---DASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYS--------------------T---VE 134 (608)
Q Consensus 81 ad~iilV~d~~~---~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~--------------------~---~e 134 (608)
+|++++|+|+++ +++.+.+. .+.. .++|+++|+||+|+.+.. . ++
T Consensus 97 aD~~ilVvda~~g~~~qt~e~l~-----~~~~----~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~ 167 (482)
T 1wb1_A 97 IDLALIVVDAKEGPKTQTGEHML-----ILDH----FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIP 167 (482)
T ss_dssp CCEEEEEEETTTCSCHHHHHHHH-----HHHH----TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEE
T ss_pred CCEEEEEEecCCCccHHHHHHHH-----HHHH----cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEE
Confidence 999999999998 45555443 2332 368899999999997521 1 88
Q ss_pred cCcccCcCHHHHHHHHHHHHhC
Q psy3301 135 SSAKTLKNISEMFYYAQKAVLH 156 (608)
Q Consensus 135 ~SAk~~~~i~~lf~~l~~~i~~ 156 (608)
+||++|.||+++++++.+.+..
T Consensus 168 vSA~~g~gI~~L~~~L~~~i~~ 189 (482)
T 1wb1_A 168 ISAKTGFGVDELKNLIITTLNN 189 (482)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHH
T ss_pred EECcCCCCHHHHHHHHHHhhcC
Confidence 9999999999999999987753
No 280
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.57 E-value=3.6e-15 Score=146.40 Aligned_cols=120 Identities=13% Similarity=0.055 Sum_probs=73.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCC--CCcceEecCccCCCceeEEEEeCCCCCCC-----------hHHH
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPS--KAEEITIPPDVTPEMVPTHIVDYSEVDQT-----------VDEL 74 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~-----------~~~~ 74 (608)
...+||+|+|++|||||||+++|++..+.....+ ..+.......+...+..+.||||||.... ...+
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~ 106 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCI 106 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHH
Confidence 3569999999999999999999999887543221 12222222223445678999999995432 1122
Q ss_pred HHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhh-ccCCCCcEEEEEeCcCCCCC
Q psy3301 75 TEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNC-LVDTCLPIVLVGNKVDLVDY 130 (608)
Q Consensus 75 ~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~-~~~~~~piilv~nK~Dl~~~ 130 (608)
...++.+|++|+|+|+++...-+. .|+..+... ......|++||+||+|+...
T Consensus 107 ~~~~~~~~~~l~v~d~~~~~~~~~---~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~ 160 (239)
T 3lxx_A 107 LLTSPGPHALLLVVPLGRYTEEEH---KATEKILKMFGERARSFMILIFTRKDDLGD 160 (239)
T ss_dssp HHTTTCCSEEEEEEETTCCSSHHH---HHHHHHHHHHHHHHGGGEEEEEECGGGC--
T ss_pred HhcCCCCcEEEEEeeCCCCCHHHH---HHHHHHHHHhhhhccceEEEEEeCCccCCc
Confidence 233456799999999976544221 233332211 11134699999999998654
No 281
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens}
Probab=99.57 E-value=5.7e-16 Score=147.79 Aligned_cols=160 Identities=13% Similarity=0.146 Sum_probs=118.5
Q ss_pred cccChHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHH
Q psy3301 166 KQELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHN 245 (608)
Q Consensus 166 ~~~l~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~ 245 (608)
...++++.++.|+++|..+|.|++|.|+.+|+..+ +. +|..++ ++.++..++.+ ++|.|+|++|+.++.
T Consensus 20 ~~~ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~~-~~-lg~~~~---~~~l~~~~D~d------~dg~i~~~EF~~~~~ 88 (202)
T 2bec_A 20 ETGFSQASLLRLHHRFRALDRNKKGYLSRMDLQQI-GA-LAVNPL---GDRIIESFFPD------GSQRVDFPGFVRVLA 88 (202)
T ss_dssp HHCCCHHHHHHHHHHHHHHCSSCSSCCCHHHHHTC-HH-HHHSTT---HHHHHHTTSCS------SCCCCCHHHHHHHHG
T ss_pred ccCCCHHHHHHHHHHHHHHCCCCCCCcCHHHHHHH-Hh-cCCCcc---HHHHHHHhCCC------CCCcCcHHHHHHHHH
Confidence 34577888999999999999999999999999999 44 676554 78888888777 799999999997754
Q ss_pred HHHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccC
Q psy3301 246 LFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLC 325 (608)
Q Consensus 246 ~~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~ 325 (608)
..... +.+ .+|..... .........+.++.+|+.||.|++|+|+.+||+.++..+
T Consensus 89 ~~~~~-~~~---------------------~~~~~~~~---~~~~~~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~ 143 (202)
T 2bec_A 89 HFRPV-EDE---------------------DTETQDPK---KPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQVLRLM 143 (202)
T ss_dssp GGSCC-CHH---------------------HHC--------CCCCTTSHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHS
T ss_pred Hhccc-chh---------------------cccccccc---cccccccHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHh
Confidence 32100 000 00000000 011233346789999999999999999999999999988
Q ss_pred -CCCCCCCCccccccc----eecCCCCccchhhHHhHhhhh
Q psy3301 326 -PPECPPWTDREMRAM----VATNSKGWITMQGFLCYWILT 361 (608)
Q Consensus 326 -~~~~~~~~~~~~~~~----~d~~~~g~i~~~ef~~~w~~~ 361 (608)
|....+.+...++.. +|.|++|.|+|+||+..+.-.
T Consensus 144 ~g~~~~~~~~~~~~~~~~~~~D~d~dG~Is~~EF~~~~~~~ 184 (202)
T 2bec_A 144 VGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFTKSLEKM 184 (202)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHCSSCSSSEEHHHHHHTTTTS
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHh
Confidence 744444446677777 999999999999999887543
No 282
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.35 E-value=1.6e-16 Score=151.79 Aligned_cols=142 Identities=17% Similarity=0.171 Sum_probs=107.4
Q ss_pred CCceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceE-------ecceEeCCcceeEeeeeccccc----
Q psy3301 406 TRNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYT-------INTTTVYGQEKYLVLKEILVRD---- 474 (608)
Q Consensus 406 ~r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~-------i~~~~v~Gqe~~~~l~~~~~~~---- 474 (608)
....+||+|+|++|||||||+++|+++.+...+.++.+. .+...+. +.-++++|+++|..++..+++.
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 105 (204)
Confidence 356799999999999999999999999988777666544 2222222 2234559999999888887766
Q ss_pred --ccccCCCCcc--cccc-cccC-----CCCCcEEEEEeCCCCCcch------------hcccccHHHHHHHcCCCCceE
Q psy3301 475 --EQLPVLLPVD--VDCD-KYFS-----TSKIPVMLVAGKSDMPRAR------------QDYLMQPDIFCETHKLSPAHS 532 (608)
Q Consensus 475 --v~d~~l~~~~--~~~~-~~~~-----~~~~p~ilVgnK~DL~~~~------------~~~~~~~~~~~~~~~~~~~~~ 532 (608)
||| +++.. ..+. .+.. .+++|+++|+||+||.+.+ ++..+++.++++.+++.++++
T Consensus 106 ilv~D--~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 183 (204)
T 3th5_A 106 LICFS--LVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 183 (204)
Confidence 777 66654 2222 2211 2389999999999997543 566788999999999855899
Q ss_pred Ec--cCCCHHHHHHHHHHHH
Q psy3301 533 FS--AANNDREVFVKLATMA 550 (608)
Q Consensus 533 ~S--~~~~v~e~F~~l~~~a 550 (608)
+| ++.|++++|..|++.+
T Consensus 184 vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 184 CSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 99 8999999999998765
No 283
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.57 E-value=1.9e-15 Score=143.71 Aligned_cols=141 Identities=17% Similarity=0.242 Sum_probs=104.9
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCc------------------------------------
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPP------------------------------------ 450 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~------------------------------------ 450 (608)
+..+||+|+|++|||||||+++|+++.+...+.++++.+.+...
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 45699999999999999999999999998777766654111111
Q ss_pred --------eEecceEeCCcceeEeeeeccccc------ccccCCCCcc--ccccccc----CCCCCcEEEEEeCCCCCcc
Q psy3301 451 --------YTINTTTVYGQEKYLVLKEILVRD------EQLPVLLPVD--VDCDKYF----STSKIPVMLVAGKSDMPRA 510 (608)
Q Consensus 451 --------~~i~~~~v~Gqe~~~~l~~~~~~~------v~d~~l~~~~--~~~~~~~----~~~~~p~ilVgnK~DL~~~ 510 (608)
+.+.-++.+|+++|..++..+++. ||| +++.. .....|. ...++|+++|+||+| ...
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D--~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D-~~~ 161 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFD--ISNSNTLDRAKTWVNQLKISSNYIIILVANKID-KNK 161 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEE--TTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTT-CC-
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEE--CCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCC-ccc
Confidence 334445558988888777666655 777 66654 2222111 113499999999999 555
Q ss_pred hhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHHHHHHHHc
Q psy3301 511 RQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFVKLATMAA 551 (608)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~~l~~~a~ 551 (608)
+++..+++.+++++++++ ++++| ++.|++++|..|++.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~l~~~l~~~~~ 203 (208)
T 3clv_A 162 FQVDILEVQKYAQDNNLL-FIQTSAKTGTNIKNIFYMLAEEIY 203 (208)
T ss_dssp CCSCHHHHHHHHHHTTCE-EEEECTTTCTTHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHcCCc-EEEEecCCCCCHHHHHHHHHHHHH
Confidence 667778899999999985 88999 89999999999998774
No 284
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.57 E-value=7e-15 Score=157.04 Aligned_cols=137 Identities=14% Similarity=0.078 Sum_probs=95.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCCc-------------------------------CCCCCcceEecCccCCC
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPEL-------------------------------VPSKAEEITIPPDVTPE 55 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~-------------------------------~~~~~~~~~i~~~~~~~ 55 (608)
.+..++|+++|.+++|||||+++|+....... .....+.......+...
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 45679999999999999999999965431110 00111122222234456
Q ss_pred ceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEcCChhh---HH---HHHHhHHHHHhhhccCCCCc-EEEEEeCcCCC
Q psy3301 56 MVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSVVDDAS---ID---RLSSHWLPFLRNCLVDTCLP-IVLVGNKVDLV 128 (608)
Q Consensus 56 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~~~~s---~~---~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~ 128 (608)
+..+.||||||+++|...+...++.+|++|+|+|+++... |+ ... ..+..+. ..++| +|+|+||+|+.
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~-e~l~~~~----~~~v~~iIvviNK~Dl~ 168 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTR-EHAMLAK----TAGVKHLIVLINKMDDP 168 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHH-HHHHHHH----HcCCCeEEEEeecCCCc
Confidence 6789999999999999999999999999999999998532 11 111 1112222 23567 99999999985
Q ss_pred CCC--------------------------C---cccCcccCcCHHHHHH
Q psy3301 129 DYS--------------------------T---VESSAKTLKNISEMFY 148 (608)
Q Consensus 129 ~~~--------------------------~---~e~SAk~~~~i~~lf~ 148 (608)
... . +++||++|.|+.++.+
T Consensus 169 ~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 169 TVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 310 1 7899999999998765
No 285
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.57 E-value=1.5e-15 Score=144.10 Aligned_cols=147 Identities=14% Similarity=0.079 Sum_probs=98.9
Q ss_pred CCCceEEEEEEccCCCchHHHHHHHhcCCCCC-CCCCCCCCCcC---CCceEecceEeCCcceeEeeeeccccc------
Q psy3301 405 TTRNVYVCHVIGNRSTGKTALCQSILRKHHDS-SKTSITSPVEC---DPPYTINTTTVYGQEKYLVLKEILVRD------ 474 (608)
Q Consensus 405 ~~r~~~k~~viG~~gvGKTsll~~f~~~~~~~-~~~~t~~~~~~---~~~~~i~~~~v~Gqe~~~~l~~~~~~~------ 474 (608)
...+.+||+|+|++|||||||+++|+++.+.. .+.+|++.... ...+.+.-++++|+++|..++..+++.
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 92 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIF 92 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEE
Confidence 45567999999999999999999999999988 67777665111 123344455669999999888888776
Q ss_pred ccccCCCCcc--cccccc----cC----------CCCCcEEEEEeCCCCCcchh---ccccc-HHHHHHHcCCCCceEEc
Q psy3301 475 EQLPVLLPVD--VDCDKY----FS----------TSKIPVMLVAGKSDMPRARQ---DYLMQ-PDIFCETHKLSPAHSFS 534 (608)
Q Consensus 475 v~d~~l~~~~--~~~~~~----~~----------~~~~p~ilVgnK~DL~~~~~---~~~~~-~~~~~~~~~~~~~~~~S 534 (608)
||| +++.+ ..+..+ .. ..++|+++||||+||..... +.... ...+++..+++ ++++|
T Consensus 93 v~D--~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~S 169 (199)
T 4bas_A 93 VVD--SSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFV-IFASN 169 (199)
T ss_dssp EEE--TTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEE-EEECB
T ss_pred EEE--CCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeE-EEEee
Confidence 788 77665 222211 11 13899999999999976421 11111 11122445554 78888
Q ss_pred --cCCCHHHHHHHHHHHHcCCC
Q psy3301 535 --AANNDREVFVKLATMAAFPR 554 (608)
Q Consensus 535 --~~~~v~e~F~~l~~~a~~p~ 554 (608)
++.||+++|..|++.+....
T Consensus 170 a~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 170 GLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp TTTTBTHHHHHHHHHHHHHHHC
T ss_pred CCCccCHHHHHHHHHHHHHHHh
Confidence 89999999999999875543
No 286
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.57 E-value=9.6e-16 Score=155.64 Aligned_cols=140 Identities=21% Similarity=0.188 Sum_probs=97.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCc-CCCCCcceEecCccCCCceeEEEEeCCCCC-CChHHH--------HHHH
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPEL-VPSKAEEITIPPDVTPEMVPTHIVDYSEVD-QTVDEL--------TEEI 78 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~-~~~~~~--------~~~~ 78 (608)
+..+|+|+|++|||||||+++|++..+... ..+.+++..+...+...+..+.+|||||+. .....+ ...+
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l 86 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSI 86 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHH
Confidence 345899999999999999999999876432 112122222222234456789999999987 332222 2345
Q ss_pred HhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCC-CC-----------------cccCcccC
Q psy3301 79 QKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDY-ST-----------------VESSAKTL 140 (608)
Q Consensus 79 ~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~-~~-----------------~e~SAk~~ 140 (608)
+.+|++++|+|+++ -+ .....+...+. ..+.|+++|+||+|+... .. +++||+++
T Consensus 87 ~~~D~vl~Vvd~~~-~~--~~~~~i~~~l~----~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g 159 (301)
T 1ega_A 87 GDVELVIFVVEGTR-WT--PDDEMVLNKLR----EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG 159 (301)
T ss_dssp CCEEEEEEEEETTC-CC--HHHHHHHHHHH----SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT
T ss_pred hcCCEEEEEEeCCC-CC--HHHHHHHHHHH----hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCC
Confidence 77999999999977 32 22212223333 247899999999999862 11 78999999
Q ss_pred cCHHHHHHHHHHHHh
Q psy3301 141 KNISEMFYYAQKAVL 155 (608)
Q Consensus 141 ~~i~~lf~~l~~~i~ 155 (608)
.|++++++.+.+.+.
T Consensus 160 ~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 160 LNVDTIAAIVRKHLP 174 (301)
T ss_dssp TTHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHhCC
Confidence 999999999987653
No 287
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.56 E-value=2.3e-15 Score=138.91 Aligned_cols=143 Identities=11% Similarity=-0.062 Sum_probs=95.4
Q ss_pred CCceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcC--C-CceEecceEeCCcceeEeeeeccccc------cc
Q psy3301 406 TRNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVEC--D-PPYTINTTTVYGQEKYLVLKEILVRD------EQ 476 (608)
Q Consensus 406 ~r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~--~-~~~~i~~~~v~Gqe~~~~l~~~~~~~------v~ 476 (608)
.+..+||+|+|++|||||||+++++++.+.. +.+|.+.... . ..+.+.-++++|+++|..++..+++. ||
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 82 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVV 82 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 3456899999999999999999999998864 4445443100 0 12334445559999998888777766 78
Q ss_pred ccCCCCcc--cccc----cccC---CCCCcEEEEEeCCCCCcchh---cccccHHHHHHHcCCCCceEEc--cCCCHHHH
Q psy3301 477 LPVLLPVD--VDCD----KYFS---TSKIPVMLVAGKSDMPRARQ---DYLMQPDIFCETHKLSPAHSFS--AANNDREV 542 (608)
Q Consensus 477 d~~l~~~~--~~~~----~~~~---~~~~p~ilVgnK~DL~~~~~---~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~ 542 (608)
| +++.+ .... .... ..++|+++|+||+|+.+... +....+..+++..++ +++++| ++.|++++
T Consensus 83 d--~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l 159 (171)
T 1upt_A 83 D--SCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKW-QIFKTSATKGTGLDEA 159 (171)
T ss_dssp E--TTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCE-EEEECCTTTCTTHHHH
T ss_pred E--CCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCce-EEEECcCCCCcCHHHH
Confidence 8 66654 2222 1111 26899999999999976421 111111112223344 378888 89999999
Q ss_pred HHHHHHHHcC
Q psy3301 543 FVKLATMAAF 552 (608)
Q Consensus 543 F~~l~~~a~~ 552 (608)
|..|++.+..
T Consensus 160 ~~~l~~~i~~ 169 (171)
T 1upt_A 160 MEWLVETLKS 169 (171)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhh
Confidence 9999998754
No 288
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.56 E-value=2.2e-15 Score=142.97 Aligned_cols=143 Identities=19% Similarity=0.232 Sum_probs=106.6
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCce-------EecceEeCCcceeEeeeeccccc-----
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPY-------TINTTTVYGQEKYLVLKEILVRD----- 474 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~-------~i~~~~v~Gqe~~~~l~~~~~~~----- 474 (608)
...+||+|+|++|||||||+++|+++.+...+.++.+. .+...+ .+.-++++|+++|..++..+++.
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIED-TYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCE-EEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccc-ceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 34589999999999999999999999988777666544 222212 23334558999888777766655
Q ss_pred -ccccCCCCcc--cccccc-------c-CCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHH
Q psy3301 475 -EQLPVLLPVD--VDCDKY-------F-STSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDRE 541 (608)
Q Consensus 475 -v~d~~l~~~~--~~~~~~-------~-~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e 541 (608)
+|| +++.+ ..+..+ . ..+++|+++|+||+||.. +++..+++.++++.++++ ++++| ++.|+++
T Consensus 85 ~v~d--~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~ 160 (199)
T 2gf0_A 85 LVFS--VTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCA-FMETSAKMNYNVKE 160 (199)
T ss_dssp EEEE--TTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCE-EEECBTTTTBSHHH
T ss_pred EEEE--CcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCe-EEEEecCCCCCHHH
Confidence 788 66654 222211 1 125799999999999976 555667889999999985 88899 8999999
Q ss_pred HHHHHHHHHcCCC
Q psy3301 542 VFVKLATMAAFPR 554 (608)
Q Consensus 542 ~F~~l~~~a~~p~ 554 (608)
+|..|++.+...+
T Consensus 161 l~~~l~~~~~~~~ 173 (199)
T 2gf0_A 161 LFQELLTLETRRN 173 (199)
T ss_dssp HHHHHHHHCSSSC
T ss_pred HHHHHHHHHhhhh
Confidence 9999999876554
No 289
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.56 E-value=1.3e-15 Score=140.40 Aligned_cols=138 Identities=9% Similarity=0.070 Sum_probs=92.5
Q ss_pred eEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceE-----ecceEeCCcceeE------eeeecccc--c-
Q psy3301 409 VYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYT-----INTTTVYGQEKYL------VLKEILVR--D- 474 (608)
Q Consensus 409 ~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~-----i~~~~v~Gqe~~~------~l~~~~~~--~- 474 (608)
.++++++|++|||||||+++|++..+...+.++.+.+.....+. +.-++.+|+++|. .+...+++ +
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 82 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKP 82 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCC
Confidence 37999999999999999999999876544433333311112222 3334459998875 23334443 2
Q ss_pred -----ccccCCCCcccccc--cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHHH
Q psy3301 475 -----EQLPVLLPVDVDCD--KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFVK 545 (608)
Q Consensus 475 -----v~d~~l~~~~~~~~--~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~~ 545 (608)
++| .++.+.... ......++|+++|+||+|+...+++. .++++++++++++ ++++| ++.|++++|..
T Consensus 83 ~~~i~v~D--~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~-~~~~SA~~~~~v~~l~~~ 158 (165)
T 2wji_A 83 DLVVNIVD--ATALERNLYLTLQLMEMGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVK-VVPLSAAKKMGIEELKKA 158 (165)
T ss_dssp SEEEEEEE--TTCHHHHHHHHHHHHHTTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSC-EEECBGGGTBSHHHHHHH
T ss_pred CEEEEEec--CCchhHhHHHHHHHHhcCCCEEEEEEchHhccccChh-hHHHHHHHHhCCC-EEEEEcCCCCCHHHHHHH
Confidence 666 555331111 11112579999999999997666654 4689999999975 89999 89999999999
Q ss_pred HHHHH
Q psy3301 546 LATMA 550 (608)
Q Consensus 546 l~~~a 550 (608)
|++.+
T Consensus 159 l~~~~ 163 (165)
T 2wji_A 159 ISIAV 163 (165)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 98865
No 290
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.56 E-value=3.6e-15 Score=141.94 Aligned_cols=135 Identities=13% Similarity=0.058 Sum_probs=88.8
Q ss_pred ceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecc-----eEeCCcceeEeeeeccccc------cc
Q psy3301 408 NVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINT-----TTVYGQEKYLVLKEILVRD------EQ 476 (608)
Q Consensus 408 ~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~-----~~v~Gqe~~~~l~~~~~~~------v~ 476 (608)
..+||+++|++|||||||+++|+++.+. .+.+|++.+ ...+.+++ ++++|+++|..++..++++ +|
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 100 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLV 100 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEE
Confidence 3479999999999999999999998875 355565541 12333333 4459999999998888777 78
Q ss_pred ccCCCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcC----------------CCCce
Q psy3301 477 LPVLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHK----------------LSPAH 531 (608)
Q Consensus 477 d~~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~----------------~~~~~ 531 (608)
| +++.+ ..+. +.....++|+++||||+||.+ ++..++..+++.... ..+++
T Consensus 101 D--~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (198)
T 1f6b_A 101 D--CADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVF 176 (198)
T ss_dssp E--TTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEE
T ss_pred E--CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEEE
Confidence 8 77654 2222 111236899999999999975 344555666655321 12378
Q ss_pred EEc--cCCCHHHHHHHHHHH
Q psy3301 532 SFS--AANNDREVFVKLATM 549 (608)
Q Consensus 532 ~~S--~~~~v~e~F~~l~~~ 549 (608)
++| ++.|++++|..|++.
T Consensus 177 ~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 177 MCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp ECBTTTTBSHHHHHHHHHTT
T ss_pred EEECCCCCCHHHHHHHHHHh
Confidence 888 899999999999764
No 291
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.56 E-value=1.2e-15 Score=143.73 Aligned_cols=142 Identities=17% Similarity=0.140 Sum_probs=99.2
Q ss_pred ccCCCceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCC---CceEecceEeCCcceeEeeeeccccc-----
Q psy3301 403 KQTTRNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECD---PPYTINTTTVYGQEKYLVLKEILVRD----- 474 (608)
Q Consensus 403 ~~~~r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~---~~~~i~~~~v~Gqe~~~~l~~~~~~~----- 474 (608)
....+..+||+|+|++|||||||+++|+++.+...+.+|++.+... ..+.+.-++++|+++|..++..+++.
T Consensus 16 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (188)
T 1zd9_A 16 PRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIV 95 (188)
T ss_dssp ---CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred ccCCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence 3345667999999999999999999999999987777676652111 23344455669999988887777665
Q ss_pred -ccccCCCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCC-------CCceEEc--c
Q psy3301 475 -EQLPVLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKL-------SPAHSFS--A 535 (608)
Q Consensus 475 -v~d~~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~-------~~~~~~S--~ 535 (608)
||| +++.+ ..+. +.....++|+++|+||+||.... +.+++++.++. .+++++| +
T Consensus 96 ~v~D--~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 168 (188)
T 1zd9_A 96 YMVD--AADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL-----DEKELIEKMNLSAIQDREICCYSISCKE 168 (188)
T ss_dssp EEEE--TTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC-----CHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred EEEE--CCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC-----CHHHHHHHhChhhhccCCeeEEEEECCC
Confidence 788 76654 2222 11123789999999999997532 23444444432 1367888 8
Q ss_pred CCCHHHHHHHHHHHHc
Q psy3301 536 ANNDREVFVKLATMAA 551 (608)
Q Consensus 536 ~~~v~e~F~~l~~~a~ 551 (608)
+.|++++|..|++.+.
T Consensus 169 g~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 169 KDNIDITLQWLIQHSK 184 (188)
T ss_dssp CTTHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999998663
No 292
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.56 E-value=3.2e-15 Score=161.86 Aligned_cols=137 Identities=16% Similarity=0.126 Sum_probs=91.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCc-------------------------------CCCCCcceEecCccCCCc
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPEL-------------------------------VPSKAEEITIPPDVTPEM 56 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~-------------------------------~~~~~~~~~i~~~~~~~~ 56 (608)
+..+||+++|++|+|||||+++|++...... .....+.......+...+
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 4579999999999999999999986521100 000111111112234567
Q ss_pred eeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEcCChhhHHHH-----HHhHHHHHhhhccCCCCcEEEEEeCcCCCCCC
Q psy3301 57 VPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSVVDDASIDRL-----SSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYS 131 (608)
Q Consensus 57 ~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~~~~s~~~~-----~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 131 (608)
..+.||||||+++|...+..+++.+|++|+|+|+++..++..+ .......+.. ....|+|||+||+|+.+..
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~---~~~~~iIvviNK~Dl~~~~ 187 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS---LGIHNLIIAMNKMDNVDWS 187 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH---TTCCCEEEEEECGGGGTTC
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH---cCCCcEEEEEECcCcccch
Confidence 8899999999999999999999999999999999987543221 1112222221 1234799999999998632
Q ss_pred C--------------------------cccCcccCcCHHHHH
Q psy3301 132 T--------------------------VESSAKTLKNISEMF 147 (608)
Q Consensus 132 ~--------------------------~e~SAk~~~~i~~lf 147 (608)
. +++||++|.||.++.
T Consensus 188 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~ 229 (483)
T 3p26_A 188 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE 229 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSC
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccC
Confidence 1 788999999987653
No 293
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.55 E-value=9.7e-15 Score=154.71 Aligned_cols=117 Identities=21% Similarity=0.227 Sum_probs=84.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcC--------CCCCc--CC-------CCCcceEecCccCCCceeEEEEeCCCCCC
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSE--------EFPEL--VP-------SKAEEITIPPDVTPEMVPTHIVDYSEVDQ 69 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~--------~~~~~--~~-------~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~ 69 (608)
.+..++|+++|++|+|||||+++|++. .+... .. ...+.......+...+..+.||||||+++
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 456799999999999999999999973 22111 00 00011111122344567899999999999
Q ss_pred ChHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCc-EEEEEeCcCCCC
Q psy3301 70 TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLP-IVLVGNKVDLVD 129 (608)
Q Consensus 70 ~~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~ 129 (608)
|...+...++.+|++|+|+|+++....+. . .|+..+.. .++| +++|+||+|+..
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~qt-~-~~l~~~~~----~~ip~iivviNK~Dl~~ 142 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMPQT-R-EHILLARQ----VGVPYIVVFMNKVDMVD 142 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCHHH-H-HHHHHHHH----TTCCCEEEEEECGGGCC
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcHHH-H-HHHHHHHH----cCCCEEEEEEECccccC
Confidence 99889999999999999999998765443 3 35555543 3678 899999999874
No 294
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.55 E-value=1.3e-15 Score=139.60 Aligned_cols=133 Identities=13% Similarity=0.031 Sum_probs=91.9
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCc--C-CCceEecceEeCCcceeEeeeeccccc------ccccCC
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVE--C-DPPYTINTTTVYGQEKYLVLKEILVRD------EQLPVL 480 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~--~-~~~~~i~~~~v~Gqe~~~~l~~~~~~~------v~d~~l 480 (608)
+||+|+|++|||||||+++|+++.+.. +.||.+... + ...+.+.-++++|+++|..++..++++ ||| +
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d--~ 77 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD--S 77 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE--T
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE--C
Confidence 589999999999999999999988874 444554310 0 022334445569999998887776665 788 7
Q ss_pred CCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCC-------CceEEc--cCCCHHHH
Q psy3301 481 LPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLS-------PAHSFS--AANNDREV 542 (608)
Q Consensus 481 ~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~-------~~~~~S--~~~~v~e~ 542 (608)
++.+ .... .....+++|+++||||+||.+.. ..+++++..+.. +++++| ++.|++++
T Consensus 78 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 152 (164)
T 1r8s_A 78 NDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEG 152 (164)
T ss_dssp TCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-----CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHH
T ss_pred CCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC-----CHHHHHHHhCcccccCccEEEEEcccCCCcCHHHH
Confidence 6654 2222 11123689999999999997531 233444443321 267888 89999999
Q ss_pred HHHHHHHH
Q psy3301 543 FVKLATMA 550 (608)
Q Consensus 543 F~~l~~~a 550 (608)
|..|++.+
T Consensus 153 ~~~l~~~i 160 (164)
T 1r8s_A 153 LDWLSNQL 160 (164)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99999876
No 295
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.55 E-value=7.8e-15 Score=155.70 Aligned_cols=144 Identities=17% Similarity=0.152 Sum_probs=100.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCC---CCCcCCC--CCcceEecCcc---------------C--C----CceeEE
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEE---FPELVPS--KAEEITIPPDV---------------T--P----EMVPTH 60 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~---~~~~~~~--~~~~~~i~~~~---------------~--~----~~~~~~ 60 (608)
.+..++|+++|+.++|||||+++|++.. +.....+ +.........+ . . ....+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 3456899999999999999999999543 2222222 11100000000 0 1 126799
Q ss_pred EEeCCCCCCChHHHHHHHHhcCcEEEEEEcCCh----hhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC----
Q psy3301 61 IVDYSEVDQTVDELTEEIQKAHVICLVYSVVDD----ASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST---- 132 (608)
Q Consensus 61 i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~~~----~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~---- 132 (608)
||||||+++|...+...+..+|++|+|+|+++. ++.+.+. .| ..+. ..|+++|+||+|+.....
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~-~~-~~~~------~~~iivviNK~Dl~~~~~~~~~ 158 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM-AL-QIIG------QKNIIIAQNKIELVDKEKALEN 158 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH-HH-HHHT------CCCEEEEEECGGGSCHHHHHHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH-HH-HHcC------CCcEEEEEECccCCCHHHHHHH
Confidence 999999998887777778889999999999953 4555543 22 1111 248999999999975320
Q ss_pred ------------------cccCcccCcCHHHHHHHHHHHHhCCC
Q psy3301 133 ------------------VESSAKTLKNISEMFYYAQKAVLHPM 158 (608)
Q Consensus 133 ------------------~e~SAk~~~~i~~lf~~l~~~i~~~~ 158 (608)
+++||++|.||+++++++.+.+..|.
T Consensus 159 ~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p~ 202 (410)
T 1kk1_A 159 YRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTPK 202 (410)
T ss_dssp HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCc
Confidence 88999999999999999998775443
No 296
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.55 E-value=7.6e-16 Score=149.16 Aligned_cols=144 Identities=17% Similarity=0.151 Sum_probs=108.4
Q ss_pred CCceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCc-------eEecceEeCCcceeEeeeeccccc----
Q psy3301 406 TRNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPP-------YTINTTTVYGQEKYLVLKEILVRD---- 474 (608)
Q Consensus 406 ~r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~-------~~i~~~~v~Gqe~~~~l~~~~~~~---- 474 (608)
....+||+|+|++|||||||+++|+.+.+...+.++++.+..... +.+.-++++|+++|..++..+++.
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 91 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCA 91 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEE
Confidence 345699999999999999999999988887777667665222222 233344559999999888887776
Q ss_pred --ccccCCCCcc--ccccccc-----CCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHH
Q psy3301 475 --EQLPVLLPVD--VDCDKYF-----STSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVF 543 (608)
Q Consensus 475 --v~d~~l~~~~--~~~~~~~-----~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F 543 (608)
||| +++.. ..+..|+ ..+++|+++||||+||.+.+. ..+..++++.++++ ++++| ++.|++++|
T Consensus 92 i~v~d--~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l~ 166 (221)
T 3gj0_A 92 IIMFD--VTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQ-YYDISAKSNYNFEKPF 166 (221)
T ss_dssp EEEEE--TTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSS--CGGGCCHHHHHTCE-EEECBGGGTBTTTHHH
T ss_pred EEEEE--CCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccc--cHHHHHHHHHcCCE-EEEEeCCCCCCHHHHH
Confidence 788 77655 2222121 135899999999999986443 34677899999986 88999 899999999
Q ss_pred HHHHHHHcCCC
Q psy3301 544 VKLATMAAFPR 554 (608)
Q Consensus 544 ~~l~~~a~~p~ 554 (608)
..|++.+....
T Consensus 167 ~~l~~~l~~~~ 177 (221)
T 3gj0_A 167 LWLARKLIGDP 177 (221)
T ss_dssp HHHHHHHHTCT
T ss_pred HHHHHHHHhCc
Confidence 99999886543
No 297
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.54 E-value=8.4e-15 Score=139.35 Aligned_cols=142 Identities=21% Similarity=0.249 Sum_probs=105.8
Q ss_pred ceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecce-------EeCCcceeEeeeeccccc------
Q psy3301 408 NVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINTT-------TVYGQEKYLVLKEILVRD------ 474 (608)
Q Consensus 408 ~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~~-------~v~Gqe~~~~l~~~~~~~------ 474 (608)
+.+|++|+|++|||||||++++++..+...+.++.+.+.....+.+++. +.+|+++|..+...+++.
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 83 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL 83 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEE
Confidence 5699999999999999999999999998877777665222233444442 448888888777766665
Q ss_pred ccccCCCCcc--cccccc------cCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHH
Q psy3301 475 EQLPVLLPVD--VDCDKY------FSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFV 544 (608)
Q Consensus 475 v~d~~l~~~~--~~~~~~------~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~ 544 (608)
||| +++.. ..+..| ....+.|+++|+||+||.+.+++...++..++++.++. ++++| ++.+++++|.
T Consensus 84 v~d--~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~-~~d~Sal~~~~i~~l~~ 160 (199)
T 2f9l_A 84 VYD--IAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLS-FIETSALDSTNVEEAFK 160 (199)
T ss_dssp EEE--TTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECCTTTCTTHHHHHH
T ss_pred EEE--CcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCe-EEEEeCCCCCCHHHHHH
Confidence 577 55543 222211 12467899999999999887777778899999999985 78888 8999999999
Q ss_pred HHHHHHcC
Q psy3301 545 KLATMAAF 552 (608)
Q Consensus 545 ~l~~~a~~ 552 (608)
.|++.+..
T Consensus 161 ~l~~~~~~ 168 (199)
T 2f9l_A 161 NILTEIYR 168 (199)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987743
No 298
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.54 E-value=8.1e-15 Score=138.62 Aligned_cols=141 Identities=20% Similarity=0.235 Sum_probs=107.2
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecc-------eEeCCcceeEeeeeccccc-----
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINT-------TTVYGQEKYLVLKEILVRD----- 474 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~-------~~v~Gqe~~~~l~~~~~~~----- 474 (608)
...+|++|+|++|||||||++++++..+...+.+|++.+.....+.+++ .+.+|+++|..+...+++.
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 4579999999999999999999999999888877776522233444444 2347888888777766654
Q ss_pred -ccccCCCCcc--cccccc------cCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHH
Q psy3301 475 -EQLPVLLPVD--VDCDKY------FSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVF 543 (608)
Q Consensus 475 -v~d~~l~~~~--~~~~~~------~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F 543 (608)
+|| +++.. +.+..| ....+.|+++|+||+||.+.+++...++..++++.++. ++++| ++.+++++|
T Consensus 107 ~v~d--~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~-~ld~Sald~~~v~~l~ 183 (191)
T 1oix_A 107 LVYD--IAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLS-FIETSALDSTNVEAAF 183 (191)
T ss_dssp EEEE--TTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECCTTTCTTHHHHH
T ss_pred EEEE--CcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEeCCCCCCHHHHH
Confidence 567 55443 222211 12467899999999999887777778899999999985 78888 899999999
Q ss_pred HHHHHHH
Q psy3301 544 VKLATMA 550 (608)
Q Consensus 544 ~~l~~~a 550 (608)
..|.+.+
T Consensus 184 ~~l~~~i 190 (191)
T 1oix_A 184 QTILTEI 190 (191)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998865
No 299
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.54 E-value=4e-15 Score=140.59 Aligned_cols=133 Identities=14% Similarity=0.073 Sum_probs=92.0
Q ss_pred eEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEec-----ceEeCCcceeEeeeeccccc------ccc
Q psy3301 409 VYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTIN-----TTTVYGQEKYLVLKEILVRD------EQL 477 (608)
Q Consensus 409 ~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~-----~~~v~Gqe~~~~l~~~~~~~------v~d 477 (608)
.+||+++|++|||||||+++++++.+.. +.+|++.+ ...+.++ -.+++|+++|..++..+++. |||
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~~~~-~~~t~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 99 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPT--SEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD 99 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCCSCE--EEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCc-cccCCCCC--eEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEE
Confidence 3699999999999999999999998863 44555441 1223333 34459999998888877776 788
Q ss_pred cCCCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHH------------cCCCCceEEc--
Q psy3301 478 PVLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCET------------HKLSPAHSFS-- 534 (608)
Q Consensus 478 ~~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~------------~~~~~~~~~S-- 534 (608)
+++.+ ..+. +.....++|+++||||+|+.+ ++..++..+++.. .++ +++++|
T Consensus 100 --~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 174 (190)
T 1m2o_B 100 --AADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPV-EVFMCSVV 174 (190)
T ss_dssp --TTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCE-EEEECBTT
T ss_pred --CCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceE-EEEEeECC
Confidence 77664 2222 112236899999999999975 2333334443332 122 378888
Q ss_pred cCCCHHHHHHHHHHH
Q psy3301 535 AANNDREVFVKLATM 549 (608)
Q Consensus 535 ~~~~v~e~F~~l~~~ 549 (608)
++.|++++|..|++.
T Consensus 175 ~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 175 MRNGYLEAFQWLSQY 189 (190)
T ss_dssp TTBSHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHhh
Confidence 899999999999753
No 300
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding, phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Probab=99.54 E-value=8.8e-15 Score=134.97 Aligned_cols=126 Identities=15% Similarity=0.222 Sum_probs=108.0
Q ss_pred HHHHhccCCCCCccCHHHHHHHhhcccCC-----CCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHHHhcCCC
Q psy3301 179 RIFKVCDLDNDNLLSDKELNAFQRRCFDA-----PLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQRGRS 253 (608)
Q Consensus 179 ~~f~~~D~d~dg~l~~~El~~~~~~~~g~-----~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~~~~~~~ 253 (608)
+.|..+|.|++|.|+.+|+..+++. +|. +++.++++.++..++.+ ++|.|+|++|+.++..
T Consensus 5 ~~F~~~D~d~~G~i~~~el~~~l~~-lg~~~~~~~~~~~~~~~l~~~~D~~------~~g~i~~~eF~~~~~~------- 70 (167)
T 1gjy_A 5 YGYFASVAGQDGQIDADELQRCLTQ-SGIAGGYKPFNLETCRLMVSMLDRD------MSGTMGFNEFKELWAV------- 70 (167)
T ss_dssp HHHHHHHCCTTSCBCHHHHHHHHHH-HTCSTTSCCCCHHHHHHHHHHHCTT------CCSCBCHHHHHHHHHH-------
T ss_pred HHHHHHHcCCCCcCCHHHHHHHHHh-hcccCCCCCcCHHHHHHHHHHHCCC------CCCcCCHHHHHHHHHH-------
Confidence 4588999999999999999999987 565 68899999999999988 8999999999977542
Q ss_pred cchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCCCCCCCCC
Q psy3301 254 HTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPECPPWT 333 (608)
Q Consensus 254 e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~~~~~~~~ 333 (608)
.+.++.+|+.||+|++|.|+.+|++.++...|....+.+
T Consensus 71 -----------------------------------------~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~ 109 (167)
T 1gjy_A 71 -----------------------------------------LNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQT 109 (167)
T ss_dssp -----------------------------------------HHHHHHHHHHHCTTCCSEECHHHHHHHHHTTTCCCCHHH
T ss_pred -----------------------------------------HHHHHHHHHHhCCCCCCcCCHHHHHHHHHHcCCCCCHHH
Confidence 246888999999999999999999999999874444455
Q ss_pred ccccccceecCCCCccchhhHHhHhhhh
Q psy3301 334 DREMRAMVATNSKGWITMQGFLCYWILT 361 (608)
Q Consensus 334 ~~~~~~~~d~~~~g~i~~~ef~~~w~~~ 361 (608)
...++..+ |++|.|+|+||+..+.-.
T Consensus 110 ~~~~~~~~--d~dg~i~~~eF~~~~~~~ 135 (167)
T 1gjy_A 110 VNSIAKRY--STSGKITFDDYIACCVKL 135 (167)
T ss_dssp HHHHHHHT--CBTTBEEHHHHHHHHHHH
T ss_pred HHHHHHHh--CcCCcCcHHHHHHHHHHH
Confidence 67777777 899999999999988654
No 301
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.54 E-value=2e-15 Score=141.37 Aligned_cols=136 Identities=9% Similarity=-0.013 Sum_probs=91.2
Q ss_pred CCCceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCC---CceEecceEeCCcceeEeeeeccccc------c
Q psy3301 405 TTRNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECD---PPYTINTTTVYGQEKYLVLKEILVRD------E 475 (608)
Q Consensus 405 ~~r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~---~~~~i~~~~v~Gqe~~~~l~~~~~~~------v 475 (608)
.....+||+|+|++|||||||+++|+++.+ ..+.+|++.+... ..+.+.-++++|+++|..++..+++. |
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 95 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVV 95 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEE
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 345569999999999999999999999988 4455566541100 11233344559999998888877776 7
Q ss_pred cccCCCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHH--------cCCCCceEEc--cC
Q psy3301 476 QLPVLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCET--------HKLSPAHSFS--AA 536 (608)
Q Consensus 476 ~d~~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~--------~~~~~~~~~S--~~ 536 (608)
|| +++.+ ..+. +.....++|+++|+||+||.+.. ..+++.+. .++ +++++| ++
T Consensus 96 ~D--~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-----~~~~i~~~~~~~~~~~~~~-~~~~~Sa~~g 167 (181)
T 2h17_A 96 VD--STDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM-----TVAEISQFLKLTSIKDHQW-HIQACCALTG 167 (181)
T ss_dssp EE--TTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-----CHHHHHHHTTGGGCCSSCE-EEEECBTTTT
T ss_pred EE--CCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCC-----CHHHHHHHhCcccccCCce-EEEEccCCCC
Confidence 88 66654 2222 11113789999999999997531 12223222 233 378888 89
Q ss_pred CCHHHHHHHHHHH
Q psy3301 537 NNDREVFVKLATM 549 (608)
Q Consensus 537 ~~v~e~F~~l~~~ 549 (608)
.|++++|..|++.
T Consensus 168 ~gi~~l~~~l~~~ 180 (181)
T 2h17_A 168 EGLCQGLEWMMSR 180 (181)
T ss_dssp BTHHHHHHHHHTC
T ss_pred cCHHHHHHHHHhh
Confidence 9999999999763
No 302
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent kinase, structural genomics, structural GE consortium, SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Probab=99.53 E-value=1.4e-15 Score=143.32 Aligned_cols=142 Identities=25% Similarity=0.282 Sum_probs=116.3
Q ss_pred hHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcc----------cCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhh
Q psy3301 170 TPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRC----------FDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNG 239 (608)
Q Consensus 170 ~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~----------~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~ 239 (608)
+++....++++|..+|.|++|.|+.+|+..+++.. .+..++.+++..++..++.+ ++|.|++++
T Consensus 35 ~~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d------~~g~i~~~e 108 (191)
T 3khe_A 35 TLEETKELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVDHILQSVDFD------RNGYIEYSE 108 (191)
T ss_dssp CTTTTHHHHHHHHHHCTTCSSEECHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHTCTT------CSSSEEHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHhCCC------CCCcCCHHH
Confidence 44566789999999999999999999999998863 26667788899999998888 799999999
Q ss_pred HHHHHHHHHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHH
Q psy3301 240 FLFLHNLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQA 319 (608)
Q Consensus 240 F~~l~~~~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~ 319 (608)
|+.++...... ...+.++.+|+.||.|++|+|+.+|++
T Consensus 109 f~~~~~~~~~~------------------------------------------~~~~~~~~~F~~~D~d~~G~I~~~E~~ 146 (191)
T 3khe_A 109 FVTVCMDKQLL------------------------------------------LSRERLLAAFQQFDSDGSGKITNEELG 146 (191)
T ss_dssp HHHHHSCHHHH------------------------------------------CCHHHHHHHHHHHCTTCSSEECHHHHH
T ss_pred HHHHHHHhccc------------------------------------------chHHHHHHHHHHHCCCCcCcCCHHHHH
Confidence 99765321100 013568999999999999999999999
Q ss_pred HhhccCCCCCCCCCccccccceecCCCCccchhhHHhHhhhh
Q psy3301 320 RLFSLCPPECPPWTDREMRAMVATNSKGWITMQGFLCYWILT 361 (608)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~~ 361 (608)
.++. +....+.+...++..+|.|++|.|+|+||+..|.-.
T Consensus 147 ~~l~--~~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~~ 186 (191)
T 3khe_A 147 RLFG--VTEVDDETWHQVLQECDKNNDGEVDFEEFVEMMQKI 186 (191)
T ss_dssp HHTT--SSCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHH
T ss_pred HHHc--cCCCCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 9999 422555557889999999999999999999988643
No 303
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.53 E-value=5.3e-15 Score=139.31 Aligned_cols=143 Identities=12% Similarity=-0.060 Sum_probs=95.4
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcC--C-CceEecceEeCCcceeEeeeeccccc------ccc
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVEC--D-PPYTINTTTVYGQEKYLVLKEILVRD------EQL 477 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~--~-~~~~i~~~~v~Gqe~~~~l~~~~~~~------v~d 477 (608)
+..+||+|+|++|||||||+++++++.+.. +.+|++.... . ..+.+.-++++|+++|..++..+++. |||
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 98 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVD 98 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCCEEEEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceEEEEEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEe
Confidence 345899999999999999999999988764 4445543100 0 12334445569999999888877776 788
Q ss_pred cCCCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcch---hcccccHHHHHHHcCCCCceEEc--cCCCHHHHH
Q psy3301 478 PVLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRAR---QDYLMQPDIFCETHKLSPAHSFS--AANNDREVF 543 (608)
Q Consensus 478 ~~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~---~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F 543 (608)
+++.+ .... +.....++|+++|+||+|+.+.. ++....+...++..++ +++++| ++.|++++|
T Consensus 99 --~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~ 175 (189)
T 2x77_A 99 --STDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTW-TIVKSSSKTGDGLVEGM 175 (189)
T ss_dssp --TTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCE-EEEECCTTTCTTHHHHH
T ss_pred --CCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCce-EEEEccCCCccCHHHHH
Confidence 66654 2222 12223689999999999997542 1111111112222333 378888 899999999
Q ss_pred HHHHHHHcCC
Q psy3301 544 VKLATMAAFP 553 (608)
Q Consensus 544 ~~l~~~a~~p 553 (608)
..|++.+...
T Consensus 176 ~~l~~~i~~~ 185 (189)
T 2x77_A 176 DWLVERLREQ 185 (189)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 9999987443
No 304
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.53 E-value=3.9e-15 Score=140.08 Aligned_cols=142 Identities=9% Similarity=-0.002 Sum_probs=92.5
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCC---CceEecceEeCCcceeEeeeeccccc------ccc
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECD---PPYTINTTTVYGQEKYLVLKEILVRD------EQL 477 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~---~~~~i~~~~v~Gqe~~~~l~~~~~~~------v~d 477 (608)
+..+||+|+|++|||||||+++++++.+. .+.+|++..... ..+.+.-++++|+++|..++..++++ |||
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 92 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVD 92 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence 45699999999999999999999998887 555565541100 12333344559999999888777776 788
Q ss_pred cCCCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHH-----HcCCCCceEEc--cCCCHHH
Q psy3301 478 PVLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCE-----THKLSPAHSFS--AANNDRE 541 (608)
Q Consensus 478 ~~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~-----~~~~~~~~~~S--~~~~v~e 541 (608)
+++.+ +... +.....++|+++|+||+||.+.. ..++..+... ..++ +++++| ++.|+++
T Consensus 93 --~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~-~~~~~Sa~~g~gi~~ 167 (187)
T 1zj6_A 93 --STDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM--TVAEISQFLKLTSIKDHQW-HIQACCALTGEGLCQ 167 (187)
T ss_dssp --TTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTGGGCCSSCE-EEEECBTTTTBTHHH
T ss_pred --CCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCC--CHHHHHHHhChhhhcCCCc-EEEEccCCCCcCHHH
Confidence 66654 2222 11113689999999999997522 1222222222 2233 378888 8999999
Q ss_pred HHHHHHHHHcCCC
Q psy3301 542 VFVKLATMAAFPR 554 (608)
Q Consensus 542 ~F~~l~~~a~~p~ 554 (608)
+|..|++.+..+.
T Consensus 168 l~~~l~~~~~~~~ 180 (187)
T 1zj6_A 168 GLEWMMSRLKIRL 180 (187)
T ss_dssp HHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHh
Confidence 9999999986665
No 305
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.53 E-value=1.9e-14 Score=144.20 Aligned_cols=139 Identities=12% Similarity=0.100 Sum_probs=81.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHcCCCCC-cC-------CCCCcceEecCcc--CCCceeEEEEeCCCCC-------CChH
Q psy3301 10 NVRILLLGDRHVGKTSLILSLVSEEFPE-LV-------PSKAEEITIPPDV--TPEMVPTHIVDYSEVD-------QTVD 72 (608)
Q Consensus 10 ~~kI~lvG~~~vGKTSLi~~l~~~~~~~-~~-------~~~~~~~~i~~~~--~~~~~~~~i~Dt~G~~-------~~~~ 72 (608)
.++|+|+|.+|+|||||+|+|++..... .+ .++.+.......+ .+..+.+.||||||.. .+..
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~ 87 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 87 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHH
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHH
Confidence 6899999999999999999988766433 23 2222222222223 3344689999999973 3333
Q ss_pred HH-------HHHHHh-------------cCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC
Q psy3301 73 EL-------TEEIQK-------------AHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST 132 (608)
Q Consensus 73 ~~-------~~~~~~-------------ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~ 132 (608)
.. ..++.. +|+++++++.+... +......++..+. . ++|+|+|+||+|+.....
T Consensus 88 i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~-~~~~d~~~l~~l~--~---~~pvi~V~nK~D~~~~~e 161 (274)
T 3t5d_A 88 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHG-LKPLDIEFMKRLH--E---KVNIIPLIAKADTLTPEE 161 (274)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSS-CCHHHHHHHHHHT--T---TSCEEEEESSGGGSCHHH
T ss_pred HHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCC-CCHHHHHHHHHHh--c---cCCEEEEEeccCCCCHHH
Confidence 33 455554 77899988766522 1222224555554 2 789999999999864322
Q ss_pred -------------------cccCcccCcCHHHHHHHHHHHH
Q psy3301 133 -------------------VESSAKTLKNISEMFYYAQKAV 154 (608)
Q Consensus 133 -------------------~e~SAk~~~~i~~lf~~l~~~i 154 (608)
+++||+++.|+++++..+.+.+
T Consensus 162 ~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 162 CQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 7899999999999998888765
No 306
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A {Rattus norvegicus} PDB: 2e30_A
Probab=99.53 E-value=2.1e-15 Score=144.68 Aligned_cols=169 Identities=12% Similarity=0.124 Sum_probs=119.5
Q ss_pred cChHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHH
Q psy3301 168 ELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLF 247 (608)
Q Consensus 168 ~l~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~ 247 (608)
.++++.+..|+++|..+|.|++|.|+.+|+..+. . +|..++. +++++.++.+ ++|.|+|++|+.++..+
T Consensus 22 ~ls~~~~~~l~~~F~~~D~d~dG~Is~~El~~~~-~-lg~~~~~---~~l~~~~d~~------~~g~i~~~EF~~~~~~~ 90 (208)
T 2ct9_A 22 GFSHSQITRLYSRFTSLDKGENGTLSREDFQRIP-E-LAINPLG---DRIINAFFSE------GEDQVNFRGFMRTLAHF 90 (208)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCSSEECTGGGGGCH-H-HHTSTTH---HHHHHTTSCT------TCSCEEHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHH-H-cCCCCcH---HHHHHHHcCC------CCCcCcHHHHHHHHHhh
Confidence 5677889999999999999999999999999864 2 5655544 4566666666 68999999999776432
Q ss_pred HhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccC-C
Q psy3301 248 MQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLC-P 326 (608)
Q Consensus 248 ~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~-~ 326 (608)
.... ...-|.. +. . ........+.++.+|+.||+|++|+|+.+||+.++..+ |
T Consensus 91 ~~~~-~~~~~~~------------------~~-----~--~~~~~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~~g 144 (208)
T 2ct9_A 91 RPIE-DNEKSKD------------------VN-----G--PEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMMVG 144 (208)
T ss_dssp SCCC-------------------------------------CCTTSHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHSC
T ss_pred cccc-chhhhcc------------------cc-----c--ccccccHHHHHHHHHHHHCCCCCCEEcHHHHHHHHHHHhC
Confidence 1100 0001100 00 0 00111246789999999999999999999999999885 6
Q ss_pred CCCCCCCcccc----ccceecCCCCccchhhHHhHhhhhhccCHHHHHHHHH
Q psy3301 327 PECPPWTDREM----RAMVATNSKGWITMQGFLCYWILTTLFNVNKTLEYLA 374 (608)
Q Consensus 327 ~~~~~~~~~~~----~~~~d~~~~g~i~~~ef~~~w~~~~~~~~~~~~~~l~ 374 (608)
....+.+...+ ++.+|.|+||.|+|+||+..+.-.. +..+.++++|.
T Consensus 145 ~~~s~~~~~~l~~~~~~~~D~d~dG~Is~~EF~~~~~~~~-~~~~~~~~~~~ 195 (208)
T 2ct9_A 145 VNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVLEKVD-VEQKMSIRFLH 195 (208)
T ss_dssp TTCCHHHHHHHHHHHHHHHCSSSSSSEEHHHHHHTTTTSC-GGGSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHhccC-hHHHhhHHHHH
Confidence 33444434555 8889999999999999999876554 45566666654
No 307
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.52 E-value=2.2e-15 Score=142.99 Aligned_cols=139 Identities=14% Similarity=0.058 Sum_probs=96.2
Q ss_pred CCCceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCC----------CceEecceEeCCcceeEeee---ecc
Q psy3301 405 TTRNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECD----------PPYTINTTTVYGQEKYLVLK---EIL 471 (608)
Q Consensus 405 ~~r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~----------~~~~i~~~~v~Gqe~~~~l~---~~~ 471 (608)
.....+||+|+|++|||||||++++.++ +.... +.+..... ..+.+.-.+++|+++|..+. ..+
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 92 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHK-MSPNE--TLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMI 92 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSC-CCGGG--GGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHH
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhc-CCCcc--eeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccc
Confidence 3456789999999999999999987764 43332 33331111 11233344569999987766 566
Q ss_pred ccc------ccccCCCCc--c--ccccccc-----CCCCCcEEEEEeCCCCCc-------chhcccccHHHHHH----Hc
Q psy3301 472 VRD------EQLPVLLPV--D--VDCDKYF-----STSKIPVMLVAGKSDMPR-------ARQDYLMQPDIFCE----TH 525 (608)
Q Consensus 472 ~~~------v~d~~l~~~--~--~~~~~~~-----~~~~~p~ilVgnK~DL~~-------~~~~~~~~~~~~~~----~~ 525 (608)
+++ ||| +++. + ..+..+. ..+++|++|||||+||.+ .+++...+++++++ .+
T Consensus 93 ~~~~~~~i~v~d--~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 170 (196)
T 3llu_A 93 FRGTGALIYVID--AQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKL 170 (196)
T ss_dssp HHTCSEEEEEEE--TTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred cccCCEEEEEEE--CCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcC
Confidence 666 788 7764 2 2221111 246899999999999764 46677788899999 67
Q ss_pred CCCCceEEc--cCCCHHHHHHHHHHHH
Q psy3301 526 KLSPAHSFS--AANNDREVFVKLATMA 550 (608)
Q Consensus 526 ~~~~~~~~S--~~~~v~e~F~~l~~~a 550 (608)
+++ ++++| + .||+++|..|++.+
T Consensus 171 ~~~-~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 171 HLS-FYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp CEE-EEEECTTS-THHHHHHHHHHHHT
T ss_pred Ccc-eEEEEech-hhHHHHHHHHHHHh
Confidence 775 88999 8 99999999999875
No 308
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.52 E-value=9.9e-15 Score=144.65 Aligned_cols=140 Identities=18% Similarity=0.189 Sum_probs=100.9
Q ss_pred CCceEEEEEEccC---------CCchHHHHHHHhc---CCCCCCCCCCC-CCCcCCC---------------------ce
Q psy3301 406 TRNVYVCHVIGNR---------STGKTALCQSILR---KHHDSSKTSIT-SPVECDP---------------------PY 451 (608)
Q Consensus 406 ~r~~~k~~viG~~---------gvGKTsll~~f~~---~~~~~~~~~t~-~~~~~~~---------------------~~ 451 (608)
....+||+|+|++ |||||||+++|++ +.+...+.++. +.+.... .+
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 95 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC 95 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence 3456999999999 9999999999999 66766665553 2211111 11
Q ss_pred EecceE-----------------------eCCcceeEeeeecccc---------------------c------ccccCCC
Q psy3301 452 TINTTT-----------------------VYGQEKYLVLKEILVR---------------------D------EQLPVLL 481 (608)
Q Consensus 452 ~i~~~~-----------------------v~Gqe~~~~l~~~~~~---------------------~------v~d~~l~ 481 (608)
.+.-.+ .+||++|..++..+++ + ||| ++
T Consensus 96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D--~t 173 (255)
T 3c5h_A 96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGID--VS 173 (255)
T ss_dssp CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEE--CB
T ss_pred EEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEE--CC
Confidence 122222 4789999999999887 3 788 77
Q ss_pred Cc--c--cccccc-------cCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHc-CCCCceEEc--cCCCHHHHHHHHH
Q psy3301 482 PV--D--VDCDKY-------FSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETH-KLSPAHSFS--AANNDREVFVKLA 547 (608)
Q Consensus 482 ~~--~--~~~~~~-------~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~-~~~~~~~~S--~~~~v~e~F~~l~ 547 (608)
+. + +.++.| ....++|+++||||+||.+.+++ +++.+++++. +++ ++++| ++.|++++|..|+
T Consensus 174 ~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~-~~e~SAk~g~gv~elf~~l~ 250 (255)
T 3c5h_A 174 RGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQ-VVETSARSNVNVDLAFSTLV 250 (255)
T ss_dssp C----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCC-EEECBTTTTBSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCe-EEEEECCCCCCHHHHHHHHH
Confidence 75 3 333321 12367999999999999877765 5788899874 664 88999 8999999999999
Q ss_pred HHH
Q psy3301 548 TMA 550 (608)
Q Consensus 548 ~~a 550 (608)
+.+
T Consensus 251 ~~l 253 (255)
T 3c5h_A 251 QLI 253 (255)
T ss_dssp HHH
T ss_pred HHh
Confidence 865
No 309
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A
Probab=99.52 E-value=1e-14 Score=134.15 Aligned_cols=126 Identities=15% Similarity=0.194 Sum_probs=107.7
Q ss_pred HHHHhccCCCCCccCHHHHHHHhhcccCC-----CCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHHHhcCCC
Q psy3301 179 RIFKVCDLDNDNLLSDKELNAFQRRCFDA-----PLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQRGRS 253 (608)
Q Consensus 179 ~~f~~~D~d~dg~l~~~El~~~~~~~~g~-----~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~~~~~~~ 253 (608)
+.|..+|.|++|.|+.+|+..+++. +|. +++.++++.++..++.+ ++|.|+|++|+.++..
T Consensus 3 ~~F~~~D~d~~G~i~~~el~~~l~~-lg~~~~~~~~~~~~~~~l~~~~D~~------~~g~i~~~eF~~~~~~------- 68 (165)
T 1k94_A 3 YTYFSAVAGQDGEVDAEELQRCLTQ-SGINGTYSPFSLETCRIMIAMLDRD------HTGKMGFNAFKELWAA------- 68 (165)
T ss_dssp HHHHHHHHGGGTSBCHHHHHHHHHH-HTTTTTSCCCCHHHHHHHHHHHCTT------CSSCBCHHHHHHHHHH-------
T ss_pred HHHHHHhCCCCCcCCHHHHHHHHHH-hccccCCCCCCHHHHHHHHHHhCCC------CCCcCCHHHHHHHHHH-------
Confidence 4588999999999999999999987 565 67899999999999988 8999999999977542
Q ss_pred cchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCCCCCCCCC
Q psy3301 254 HTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPECPPWT 333 (608)
Q Consensus 254 e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~~~~~~~~ 333 (608)
.+.++.+|+.||+|++|+|+.+|++.++...|....+.+
T Consensus 69 -----------------------------------------~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~ 107 (165)
T 1k94_A 69 -----------------------------------------LNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQT 107 (165)
T ss_dssp -----------------------------------------HHHHHHHHHHHCTTCCSBCCHHHHHHHHHHTTCCCCHHH
T ss_pred -----------------------------------------HHHHHHHHHHhCCCCCceECHHHHHHHHHHhCCCCCHHH
Confidence 246888999999999999999999999999874444455
Q ss_pred ccccccceecCCCCccchhhHHhHhhhh
Q psy3301 334 DREMRAMVATNSKGWITMQGFLCYWILT 361 (608)
Q Consensus 334 ~~~~~~~~d~~~~g~i~~~ef~~~w~~~ 361 (608)
...++..+ |++|.|+|+||+..+.-.
T Consensus 108 ~~~~~~~~--d~dg~i~~~eF~~~~~~~ 133 (165)
T 1k94_A 108 LTTIVKRY--SKNGRIFFDDYVACCVKL 133 (165)
T ss_dssp HHHHHHHH--CBTTBCBHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCCeEcHHHHHHHHHHH
Confidence 67777777 899999999999887654
No 310
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A
Probab=99.52 E-value=2.7e-15 Score=135.01 Aligned_cols=135 Identities=13% Similarity=0.092 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHhccCCC-CCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHHHh
Q psy3301 171 PECIKALTRIFKVCDLDN-DNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQ 249 (608)
Q Consensus 171 ~~~~~~L~~~f~~~D~d~-dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~~~ 249 (608)
.+....++++|..+|.|+ +|.|+..|+..+++. +|..++..+++.++..++. + |+|++|+.++.....
T Consensus 10 ~~~~~~l~~~F~~~D~d~~~G~i~~~el~~~l~~-~g~~~~~~~~~~l~~~~d~--------~--i~~~eF~~~~~~~~~ 78 (146)
T 2qac_A 10 LEEKVDESDVRIYFNEKSSGGKISIDNASYNARK-LGLAPSSIDEKKIKELYGD--------N--LTYEQYLEYLSICVH 78 (146)
T ss_dssp HHHHSCHHHHHHHHHHHCBTTBEEHHHHHHHHHH-TTCCCCHHHHHHHHHHHCS--------E--ECHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhCccCCCCcccHHHHHHHHHH-hCCCCCHHHHHHHHHHhCC--------C--CCHHHHHHHHHHHhc
Confidence 345667999999999999 999999999999997 7999999999998877632 2 999999977643211
Q ss_pred cCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCCCCC
Q psy3301 250 RGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPEC 329 (608)
Q Consensus 250 ~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~~~~ 329 (608)
.. ...+.++.+|+.||+|++|+|+.+||+.++..+|...
T Consensus 79 ~~-----------------------------------------~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~ 117 (146)
T 2qac_A 79 DK-----------------------------------------DNVEELIKMFAHFDNNCTGYLTKSQMKNILTTWGDAL 117 (146)
T ss_dssp TT-----------------------------------------CCHHHHHHHHHTTCTTCSSEEEHHHHHHHHHHSSSCC
T ss_pred Cc-----------------------------------------chHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhCCCC
Confidence 00 0146788999999999999999999999999987545
Q ss_pred CCCCccccccceecCCCCccchhhHHhHhh
Q psy3301 330 PPWTDREMRAMVATNSKGWITMQGFLCYWI 359 (608)
Q Consensus 330 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~ 359 (608)
++.+...++..+ |++|.|+|+||+..+.
T Consensus 118 ~~~~~~~~~~~~--d~dg~i~~~eF~~~l~ 145 (146)
T 2qac_A 118 TDQEAIDALNAF--SSEDNIDYKLFCEDIL 145 (146)
T ss_dssp CHHHHHHHHHHH--CSSSEEEHHHHHHHHT
T ss_pred CHHHHHHHHHHc--CCCCcCcHHHHHHHHh
Confidence 555567788777 9999999999998763
No 311
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.52 E-value=1.1e-14 Score=153.66 Aligned_cols=141 Identities=18% Similarity=0.173 Sum_probs=97.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCC-------CCCc--CCCC----CcceEec---CccCCCceeEEEEeCCCCCCChH
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEE-------FPEL--VPSK----AEEITIP---PDVTPEMVPTHIVDYSEVDQTVD 72 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~-------~~~~--~~~~----~~~~~i~---~~~~~~~~~~~i~Dt~G~~~~~~ 72 (608)
+.+||+++|+.++|||||+++|++.. +... .+.. ....++. ..+...+..+.||||||+++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 56899999999999999999999741 1110 0000 0112222 12344567899999999999988
Q ss_pred HHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCc-EEEEEeCcCCCCCC--------------------
Q psy3301 73 ELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLP-IVLVGNKVDLVDYS-------------------- 131 (608)
Q Consensus 73 ~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~-------------------- 131 (608)
.+...++.+|++|+|+|+++....+... .| ..+.. .++| +++|+||+|+....
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e-~l-~~~~~----~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 155 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTRE-HL-LLARQ----IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYK 155 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHHH-HH-HHHHH----TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHHH-HH-HHHHH----cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 8888899999999999999865544333 33 33432 3678 78999999987411
Q ss_pred ----C-cccCcccCcC----------HHHHHHHHHHHHh
Q psy3301 132 ----T-VESSAKTLKN----------ISEMFYYAQKAVL 155 (608)
Q Consensus 132 ----~-~e~SAk~~~~----------i~~lf~~l~~~i~ 155 (608)
. +++||++|.| +.++++.+.+.+.
T Consensus 156 ~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 156 GEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp TTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred cccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 0 6778887664 6677777666554
No 312
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}
Probab=99.52 E-value=5.7e-15 Score=137.44 Aligned_cols=121 Identities=10% Similarity=0.117 Sum_probs=101.9
Q ss_pred ccCCCCCccCHHHHHHHhhccc-----CCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHHHhcCCCcchhH
Q psy3301 184 CDLDNDNLLSDKELNAFQRRCF-----DAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQRGRSHTTWT 258 (608)
Q Consensus 184 ~D~d~dg~l~~~El~~~~~~~~-----g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~~~~~~~e~~w~ 258 (608)
-+.|++|.|+.+||..+++.+. |.++++++++.++..++.+ ++|.|+|+||+.++..
T Consensus 13 ~~~~~dG~I~~~EL~~~l~~l~~~~~~g~~~~~~~~~~l~~~~D~d------~~G~I~f~EF~~~~~~------------ 74 (174)
T 2i7a_A 13 GLVPRGSDIDATQLQGLLNQELLTGPPGDMFSLDECRSLVALMELK------VNGRLDQEEFARLWKR------------ 74 (174)
T ss_dssp CSCC-CCCEEHHHHHHHHHHHHC-----CCCCHHHHHHHHHHHCSS------CSSEECHHHHHHHHHH------------
T ss_pred ccCCCCCcCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHCCC------CCCcCCHHHHHHHHHH------------
Confidence 4678899999999999999742 6788999999999999988 7999999999977542
Q ss_pred HhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccC----CCCCCCCCc
Q psy3301 259 VLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLC----PPECPPWTD 334 (608)
Q Consensus 259 ~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~----~~~~~~~~~ 334 (608)
.+.++.+|+.|| |++|+|+.+||+.+++.+ |....+.+.
T Consensus 75 ------------------------------------~~~l~~aF~~fD-d~~G~I~~~El~~~l~~l~~~~G~~~~~~~~ 117 (174)
T 2i7a_A 75 ------------------------------------LVHYQHVFQKVQ-TSPGVLLSSDLWKAIENTDFLRGIFISRELL 117 (174)
T ss_dssp ------------------------------------HHHHHHHHHHHC-SBTTBEEGGGHHHHHHTCGGGTTCCCCHHHH
T ss_pred ------------------------------------HHHHHHHHHHhc-CCCCcCCHHHHHHHHHHhHhccCCCCCHHHH
Confidence 245888999999 999999999999999998 743444456
Q ss_pred cccccceecCCCCccchhhHHhHhhh
Q psy3301 335 REMRAMVATNSKGWITMQGFLCYWIL 360 (608)
Q Consensus 335 ~~~~~~~d~~~~g~i~~~ef~~~w~~ 360 (608)
..+++.+| |++|.|+|+||+..+.-
T Consensus 118 ~~l~~~~d-d~dG~I~~~EF~~~~~~ 142 (174)
T 2i7a_A 118 HLVTLRYS-DSVGRVSFPSLVCFLMR 142 (174)
T ss_dssp HHHHHHHS-CTTSEECHHHHHHHHHH
T ss_pred HHHHHHHc-CCCCeEcHHHHHHHHHH
Confidence 78888899 99999999999998754
No 313
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.52 E-value=1.4e-15 Score=153.55 Aligned_cols=138 Identities=15% Similarity=0.110 Sum_probs=98.8
Q ss_pred EEEEEccCCCchHHHHHHHhcCCCCC---CCCCCCCCCcC--CCceEecceEeCCcceeEe---eeeccccc------cc
Q psy3301 411 VCHVIGNRSTGKTALCQSILRKHHDS---SKTSITSPVEC--DPPYTINTTTVYGQEKYLV---LKEILVRD------EQ 476 (608)
Q Consensus 411 k~~viG~~gvGKTsll~~f~~~~~~~---~~~~t~~~~~~--~~~~~i~~~~v~Gqe~~~~---l~~~~~~~------v~ 476 (608)
|++++|++|||||||++++.++.+.. .+.+|++.+.. ...+...-.+++|||+|+. +++.|+++ ||
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~ 80 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFSTLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVI 80 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEECSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEEC
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEccEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEE
Confidence 68999999999999999988764432 24456655211 1112233345599999974 46788887 88
Q ss_pred ccCCCCcc-cccc---cc-----cCCCCCcEEEEEeCCCCCcc-------hhcccccHHHHHHH----cCCCCceEEc-c
Q psy3301 477 LPVLLPVD-VDCD---KY-----FSTSKIPVMLVAGKSDMPRA-------RQDYLMQPDIFCET----HKLSPAHSFS-A 535 (608)
Q Consensus 477 d~~l~~~~-~~~~---~~-----~~~~~~p~ilVgnK~DL~~~-------~~~~~~~~~~~~~~----~~~~~~~~~S-~ 535 (608)
| +++.- +... .+ ...+++|+++||||+||... |++..++++++|++ +++. ++++| -
T Consensus 81 D--itd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~-f~eTSAk 157 (331)
T 3r7w_B 81 D--SQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVS-FYLTSIF 157 (331)
T ss_dssp C--CSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEE-EECCCSS
T ss_pred E--CCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCce-EEEeccC
Confidence 8 77651 1111 11 12478999999999999753 67888889999996 6776 88899 4
Q ss_pred CCCHHHHHHHHHHHHc
Q psy3301 536 ANNDREVFVKLATMAA 551 (608)
Q Consensus 536 ~~~v~e~F~~l~~~a~ 551 (608)
..||.++|..+++.++
T Consensus 158 d~nV~eAFs~iv~~li 173 (331)
T 3r7w_B 158 DHSIYEAFSRIVQKLI 173 (331)
T ss_dssp SSHHHHHHHHHHTTSS
T ss_pred CCcHHHHHHHHHHHHH
Confidence 4689999999998764
No 314
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.52 E-value=7.1e-15 Score=151.33 Aligned_cols=145 Identities=17% Similarity=0.173 Sum_probs=110.8
Q ss_pred CCceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEe-------cceEeCCcceeEeeeeccccc----
Q psy3301 406 TRNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTI-------NTTTVYGQEKYLVLKEILVRD---- 474 (608)
Q Consensus 406 ~r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i-------~~~~v~Gqe~~~~l~~~~~~~---- 474 (608)
.+..+||+++|++|||||||+++|+++.+...+.+|++. .+...+.+ .-++++|+++|..++..+++.
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 230 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 230 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEE-EEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEE
T ss_pred ccceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccc-eeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEE
Confidence 355699999999999999999999999998777766544 22222223 244559999998888877776
Q ss_pred --ccccCCCCcc--cccc-ccc-----CCCCCcEEEEEeCCCCCcc------------hhcccccHHHHHHHcCCCCceE
Q psy3301 475 --EQLPVLLPVD--VDCD-KYF-----STSKIPVMLVAGKSDMPRA------------RQDYLMQPDIFCETHKLSPAHS 532 (608)
Q Consensus 475 --v~d~~l~~~~--~~~~-~~~-----~~~~~p~ilVgnK~DL~~~------------~~~~~~~~~~~~~~~~~~~~~~ 532 (608)
||| +++.. ..+. .|. ..+++|+++||||+||.+. +++..+++.++++.+++.++++
T Consensus 231 i~v~d--~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 308 (332)
T 2wkq_A 231 LICFS--LVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 308 (332)
T ss_dssp EEEEE--TTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEEe--CCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEE
Confidence 788 77655 2221 111 1348999999999999653 4567788999999999855899
Q ss_pred Ec--cCCCHHHHHHHHHHHHcCC
Q psy3301 533 FS--AANNDREVFVKLATMAAFP 553 (608)
Q Consensus 533 ~S--~~~~v~e~F~~l~~~a~~p 553 (608)
+| ++.|++++|..|++.++.|
T Consensus 309 ~Sa~~~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 309 CSALTQRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHC-
T ss_pred ecCCCCcCHHHHHHHHHHHHhcC
Confidence 99 8999999999999999876
No 315
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.51 E-value=8.8e-15 Score=160.97 Aligned_cols=138 Identities=19% Similarity=0.204 Sum_probs=99.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCcCC----CCCcceEecCc--------------cCCCceeEEEEeCCCCCCC
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVP----SKAEEITIPPD--------------VTPEMVPTHIVDYSEVDQT 70 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~----~~~~~~~i~~~--------------~~~~~~~~~i~Dt~G~~~~ 70 (608)
+..+|+|+|++++|||||+++|++..+....+ ........+.+ +......++||||||++.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 46799999999999999999999765433211 11111111110 1112235999999999999
Q ss_pred hHHHHHHHHhcCcEEEEEEcCC---hhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCC----------------
Q psy3301 71 VDELTEEIQKAHVICLVYSVVD---DASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYS---------------- 131 (608)
Q Consensus 71 ~~~~~~~~~~ad~iilV~d~~~---~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~---------------- 131 (608)
...+...++.+|++|+|+|+++ +++++.+. .+. ..++|+++|+||+|+....
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~-----~l~----~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~ 154 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALN-----ILR----MYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQD 154 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH-----HHH----HTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSC
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH-----HHH----HcCCeEEEEecccccccccccccCCchHHHHHHhH
Confidence 8887777888999999999999 66766554 222 1478999999999996310
Q ss_pred -----------------------------------C----cccCcccCcCHHHHHHHHHHHHh
Q psy3301 132 -----------------------------------T----VESSAKTLKNISEMFYYAQKAVL 155 (608)
Q Consensus 132 -----------------------------------~----~e~SAk~~~~i~~lf~~l~~~i~ 155 (608)
. +++||++|.||+++++++...+.
T Consensus 155 ~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 155 IQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 0 67899999999999888887654
No 316
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.51 E-value=1.3e-14 Score=160.62 Aligned_cols=130 Identities=16% Similarity=0.172 Sum_probs=93.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCC-------------------------------CCCcceEecCccCCCc
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVP-------------------------------SKAEEITIPPDVTPEM 56 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~-------------------------------~~~~~~~i~~~~~~~~ 56 (608)
+..+||+++|++|+|||||+++|++........ ...+.......+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 457999999999999999999999774322110 1112222222344567
Q ss_pred eeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEcCCh----------hhHHHHHHhHHHHHhhhccCCCC-cEEEEEeCc
Q psy3301 57 VPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSVVDD----------ASIDRLSSHWLPFLRNCLVDTCL-PIVLVGNKV 125 (608)
Q Consensus 57 ~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~~~----------~s~~~~~~~~~~~i~~~~~~~~~-piilv~nK~ 125 (608)
..+.||||||+++|...+...++.+|++|+|+|+++. ++.+.+ ..+. ..++ |+|||+||+
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l-----~~~~----~lgi~~iIVVvNKi 315 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHM-----LLAS----SLGIHNLIIAMNKM 315 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHH-----HHHH----TTTCCEEEEEEECT
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHH-----HHHH----HcCCCeEEEEEecc
Confidence 7899999999999988888889999999999999874 222221 1222 1233 599999999
Q ss_pred CCCCCCC--------------------------cccCcccCcCHHHH
Q psy3301 126 DLVDYST--------------------------VESSAKTLKNISEM 146 (608)
Q Consensus 126 Dl~~~~~--------------------------~e~SAk~~~~i~~l 146 (608)
|+..... ++|||++|.||.++
T Consensus 316 Dl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 316 DNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp TTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred cccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 9986321 78999999998765
No 317
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.51 E-value=2.7e-15 Score=144.42 Aligned_cols=139 Identities=17% Similarity=0.136 Sum_probs=92.7
Q ss_pred ceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCC------CceEecceEeCCcceeEe-eeeccccc------
Q psy3301 408 NVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECD------PPYTINTTTVYGQEKYLV-LKEILVRD------ 474 (608)
Q Consensus 408 ~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~------~~~~i~~~~v~Gqe~~~~-l~~~~~~~------ 474 (608)
..+||+|+|++|||||||+++|+++.|...+.++. .+.+. ..+.+.-++++|+++|.. +++.+++.
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~ 84 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSIT-DSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVF 84 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCS-CEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcc-eeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEE
Confidence 45899999999999999999999999988775332 21111 023344456699999987 77766666
Q ss_pred ccccCCCCccc---cccc---------ccCCCCCcEEEEEeCCCCCcchh------------------------------
Q psy3301 475 EQLPVLLPVDV---DCDK---------YFSTSKIPVMLVAGKSDMPRARQ------------------------------ 512 (608)
Q Consensus 475 v~d~~l~~~~~---~~~~---------~~~~~~~p~ilVgnK~DL~~~~~------------------------------ 512 (608)
||| +++.+. .... .....++|+++||||+||...+.
T Consensus 85 v~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~ 162 (214)
T 2fh5_B 85 VVD--SAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSS 162 (214)
T ss_dssp EEE--TTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC----------
T ss_pred EEE--CCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCc
Confidence 788 666331 1111 12356899999999999975431
Q ss_pred ----cccccHHHHHHHc---CCCCceEEc--cC------CCHHHHHHHHHHHH
Q psy3301 513 ----DYLMQPDIFCETH---KLSPAHSFS--AA------NNDREVFVKLATMA 550 (608)
Q Consensus 513 ----~~~~~~~~~~~~~---~~~~~~~~S--~~------~~v~e~F~~l~~~a 550 (608)
+...+++.|+.+. +++ ++++| ++ .||+++|..|++.+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~-~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 163 TAPAQLGKKGKEFEFSQLPLKVE-FLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp --CCCSSCTTSCCCGGGSSSCEE-EEECBCC-------CCBCHHHHHHHHHHC
T ss_pred cccccccCCCCCcccccCCCcEE-EEEeeccCCCccccccChHHHHHHHHHhC
Confidence 2233344444433 343 88899 78 99999999998753
No 318
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB: 2jc2_A
Probab=99.51 E-value=3.7e-15 Score=141.74 Aligned_cols=135 Identities=14% Similarity=0.229 Sum_probs=113.7
Q ss_pred ChHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCC-----CCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHH
Q psy3301 169 LTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDA-----PLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFL 243 (608)
Q Consensus 169 l~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~-----~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l 243 (608)
..+..++.|++ |..+|.|++|.|+.+|+..+++. +|. +++.++++.++..++.+ ++|.|+|++|+.+
T Consensus 27 ~~~~~~~~l~~-F~~~D~d~~G~i~~~el~~~l~~-lg~~~~~~~~~~~~~~~l~~~~D~d------~~g~i~~~eF~~~ 98 (198)
T 1juo_A 27 FPGQTQDPLYG-YFAAVAGQDGQIDADELQRCLTQ-SGIAGGYKPFNLETCRLMVSMLDRD------MSGTMGFNEFKEL 98 (198)
T ss_dssp CTTCCCCTTHH-HHHHHHTTTTEECHHHHHHHHHH-HTTTCSSCCCCHHHHHHHHHHHCTT------CSSCEEHHHHHHH
T ss_pred CCccccHHHHH-HHHHhCCCCCcCCHHHHHHHHHH-hcccCCCCCCCHHHHHHHHHHhCCC------CCCeECHHHHHHH
Confidence 33445567888 99999999999999999999987 564 67899999999999988 7999999999977
Q ss_pred HHHHHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhc
Q psy3301 244 HNLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFS 323 (608)
Q Consensus 244 ~~~~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~ 323 (608)
+.. .+.++.+|+.||+|++|.|+.+||+.++.
T Consensus 99 ~~~------------------------------------------------~~~~~~~F~~~D~d~~G~I~~~el~~~l~ 130 (198)
T 1juo_A 99 WAV------------------------------------------------LNGWRQHFISFDTDRSGTVDPQELQKALT 130 (198)
T ss_dssp HHH------------------------------------------------HHHHHHHHHTTCTTCCSEECHHHHHHHHH
T ss_pred HHH------------------------------------------------HHHHHHHHHHhCCCCCCcCCHHHHHHHHH
Confidence 542 24688899999999999999999999999
Q ss_pred cCCCCCCCCCccccccceecCCCCccchhhHHhHhhhh
Q psy3301 324 LCPPECPPWTDREMRAMVATNSKGWITMQGFLCYWILT 361 (608)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~~ 361 (608)
..|....+.+..+++..+ |++|.|+|+||+..+.-.
T Consensus 131 ~~g~~~~~~~~~~l~~~~--d~dg~i~~~eF~~~~~~~ 166 (198)
T 1juo_A 131 TMGFRLSPQAVNSIAKRY--STNGKITFDDYIACCVKL 166 (198)
T ss_dssp HTTCCCCHHHHHHHHHHT--CSSSSEEHHHHHHHHHHH
T ss_pred HhCCCCCHHHHHHHHHHh--CCCCeEcHHHHHHHHHHH
Confidence 987444445567777777 899999999999988654
No 319
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.51 E-value=3.2e-15 Score=141.47 Aligned_cols=137 Identities=13% Similarity=0.051 Sum_probs=90.1
Q ss_pred CCceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCc--CC-CceEecceEeCCcceeEeeeeccccc------cc
Q psy3301 406 TRNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVE--CD-PPYTINTTTVYGQEKYLVLKEILVRD------EQ 476 (608)
Q Consensus 406 ~r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~--~~-~~~~i~~~~v~Gqe~~~~l~~~~~~~------v~ 476 (608)
.+..+||+|+|++|||||||+++|+++.+.. +.+|.+... +. ..+.+.-++++|+++|..++..+++. ||
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~ 104 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 104 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEEEEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEE
Confidence 3456999999999999999999999988863 344444200 00 22334445559999998887776665 78
Q ss_pred ccCCCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCC-------CceEEc--cCCC
Q psy3301 477 LPVLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLS-------PAHSFS--AANN 538 (608)
Q Consensus 477 d~~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~-------~~~~~S--~~~~ 538 (608)
| +++.+ ..+. +.....++|+++|+||+||.+. ...+++++.++.. +++++| ++.|
T Consensus 105 D--~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~g 177 (192)
T 2b6h_A 105 D--SNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA-----MPVSELTDKLGLQHLRSRTWYVQATCATQGTG 177 (192)
T ss_dssp E--TTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC-----CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBT
T ss_pred E--CCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC-----CCHHHHHHHhCcccccCCceEEEECcCCCcCC
Confidence 8 76654 2222 1112358999999999999753 2234555554431 267888 8999
Q ss_pred HHHHHHHHHHHH
Q psy3301 539 DREVFVKLATMA 550 (608)
Q Consensus 539 v~e~F~~l~~~a 550 (608)
++++|..|++.+
T Consensus 178 i~~l~~~l~~~i 189 (192)
T 2b6h_A 178 LYDGLDWLSHEL 189 (192)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 999999999876
No 320
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=99.51 E-value=1.4e-14 Score=157.57 Aligned_cols=143 Identities=23% Similarity=0.278 Sum_probs=100.3
Q ss_pred hHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcc---cCCCCC----------hhhHHHHHHHHHHhcCCCccCCCCcc
Q psy3301 170 TPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRC---FDAPLS----------RDSLEDVKIVIRKNINDGVSANNCIT 236 (608)
Q Consensus 170 ~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~---~g~~~~----------~~el~~i~~~~~~~~~~~~~~~~~i~ 236 (608)
+++..+.++++|..+|.|+||.|+.+|+..++... +|..++ .++++.+++.+|.+ ++|.|+
T Consensus 326 ~~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~d------~dG~I~ 399 (486)
T 3mwu_A 326 TLDETKQLTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPLLDMD------GSGSIE 399 (486)
T ss_dssp CHHHHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHHHHHTCCGGGHHHHTSSCHHHHHHHHHHHHCTT------CCSSBC
T ss_pred cHHHHHHHHHHHHHhCCCCCceeeHHHHHHHHHHhhhhhcccchhcccccchhhHHHHHHHHHHhcCC------CCCcCc
Confidence 45667889999999999999999999996654432 466555 78899999999988 899999
Q ss_pred hhhHHHHHHHHHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHH
Q psy3301 237 LNGFLFLHNLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPE 316 (608)
Q Consensus 237 ~~~F~~l~~~~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~ 316 (608)
|+||+..+.. . . ... ..+.++.+|+.||+|+||.|+.+
T Consensus 400 ~~Ef~~~~~~---~-~-----------------------------------~~~---~~~~~~~~F~~~D~d~dG~Is~~ 437 (486)
T 3mwu_A 400 YSEFIASAID---R-T-----------------------------------ILL---SRERMERAFKMFDKDGSGKISTK 437 (486)
T ss_dssp HHHHHHHHSC---T-T-----------------------------------TTC---CHHHHHHHHHHHCSSCSSSBCSS
T ss_pred HHHHHHHHHh---h-h-----------------------------------ccc---hHHHHHHHHHHhCCCCCCcCCHH
Confidence 9999865421 0 0 000 13568899999999999999999
Q ss_pred HHHHhhccCCCCCCCCCccccccceecCCCCccchhhHHhHhhh
Q psy3301 317 EQARLFSLCPPECPPWTDREMRAMVATNSKGWITMQGFLCYWIL 360 (608)
Q Consensus 317 El~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~ 360 (608)
||+.++...|....+.+.+++++.+|.|+||.|+|+||+..+.-
T Consensus 438 El~~~l~~~g~~~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~~ 481 (486)
T 3mwu_A 438 ELFKLFSQADSSIQMEELESIIEQVDNNKDGEVDFNEFVEMLQN 481 (486)
T ss_dssp CC--------------------CCCCSSCSSSBCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHH
Confidence 99999999885566677899999999999999999999987654
No 321
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.51 E-value=2.4e-14 Score=142.46 Aligned_cols=120 Identities=17% Similarity=0.159 Sum_probs=82.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCc--CCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHH------
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPEL--VPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQ------ 79 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~------ 79 (608)
.+.++|+++|++|||||||+++|++..+... .+++ +.......+...+..+.||||||++++......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAE-GLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC--CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCc-ceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 4679999999999999999999999885332 2222 112222233456678999999999877543333332
Q ss_pred ---hcCcEEEEEEcCChhhHHHHHHhHHHHHhhh-ccCCCCcEEEEEeCcCCCC
Q psy3301 80 ---KAHVICLVYSVVDDASIDRLSSHWLPFLRNC-LVDTCLPIVLVGNKVDLVD 129 (608)
Q Consensus 80 ---~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~-~~~~~~piilv~nK~Dl~~ 129 (608)
.+|++++|++++... +......|+..+... ......|+++|+||+|+..
T Consensus 113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 789999999988654 444433677666642 1112349999999999854
No 322
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.51 E-value=5.9e-15 Score=157.69 Aligned_cols=138 Identities=17% Similarity=0.128 Sum_probs=95.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcC--CCCCcC-----------------------------CCCCcceEecCccCCCc
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSE--EFPELV-----------------------------PSKAEEITIPPDVTPEM 56 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~--~~~~~~-----------------------------~~~~~~~~i~~~~~~~~ 56 (608)
+..+||+++|+.|+|||||+++|+.. .+.... ....+.......+...+
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 45789999999999999999999875 232110 01111111122345567
Q ss_pred eeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhh---ccCCCC-cEEEEEeCcCCCCCC-
Q psy3301 57 VPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNC---LVDTCL-PIVLVGNKVDLVDYS- 131 (608)
Q Consensus 57 ~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~---~~~~~~-piilv~nK~Dl~~~~- 131 (608)
..+.||||||+++|...+..+++.+|++|+|+|+++ .+|+.+. .|.+..+.. ....++ |+++|+||+|+.+..
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~-~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~ 161 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGM-SVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPY 161 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHH-STTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTT
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-Ccccccc-ccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccc
Confidence 889999999999999988899999999999999998 6777543 232222211 111244 699999999997621
Q ss_pred -------------------------C--cccCcccCcCHHHHH
Q psy3301 132 -------------------------T--VESSAKTLKNISEMF 147 (608)
Q Consensus 132 -------------------------~--~e~SAk~~~~i~~lf 147 (608)
. +++||++|.|+.+++
T Consensus 162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~ 204 (435)
T 1jny_A 162 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS 204 (435)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred cHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence 0 689999999987665
No 323
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=99.51 E-value=1.1e-14 Score=159.04 Aligned_cols=142 Identities=23% Similarity=0.228 Sum_probs=118.9
Q ss_pred hHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhccc-------CCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHH
Q psy3301 170 TPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCF-------DAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLF 242 (608)
Q Consensus 170 ~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~-------g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~ 242 (608)
+++..+.++++|..+|.|+||.|+.+|+..+++... |..+++++++.+++.+|.+ ++|.|+|+||+.
T Consensus 350 ~~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d------~dG~I~~~EF~~ 423 (504)
T 3q5i_A 350 TLEERKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVDFD------KNGYIEYSEFIS 423 (504)
T ss_dssp CHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHHHHC--CCSCCCHHHHHHHHHHHHCTT------CSSSEEHHHHHH
T ss_pred cHHHHHHHHHHHHeeCCCCCCeEcHHHHHHHHHHhhhcccccccccccHHHHHHHHHHhCCC------CCCcEeHHHHHH
Confidence 567778899999999999999999999999877631 5567889999999999998 899999999997
Q ss_pred HHHHHHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhh
Q psy3301 243 LHNLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLF 322 (608)
Q Consensus 243 l~~~~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~ 322 (608)
++...... . ..+.++.+|+.||+|+||+|+.+||+.++
T Consensus 424 ~~~~~~~~---------------------------------------~---~~~~~~~~F~~~D~d~dG~Is~~El~~~l 461 (504)
T 3q5i_A 424 VCMDKQIL---------------------------------------F---SEERLRRAFNLFDTDKSGKITKEELANLF 461 (504)
T ss_dssp HHSCHHHH---------------------------------------T---CHHHHHHHHHHHCTTCCSEECHHHHHHHT
T ss_pred HHHhhhcc---------------------------------------c---CHHHHHHHHHHhcCCCCCcCcHHHHHHHH
Confidence 75321100 0 13578899999999999999999999999
Q ss_pred ccCCCCCCCCCccccccceecCCCCccchhhHHhHhhhh
Q psy3301 323 SLCPPECPPWTDREMRAMVATNSKGWITMQGFLCYWILT 361 (608)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~~ 361 (608)
...+ ....+.+++++.+|.|+||.|+|+||+..+.-.
T Consensus 462 ~~~~--~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~~~ 498 (504)
T 3q5i_A 462 GLTS--ISEKTWNDVLGEADQNKDNMIDFDEFVSMMHKI 498 (504)
T ss_dssp TCSC--CCHHHHHHHHHTTCSSCSSSEEHHHHHHHHHHH
T ss_pred hhCC--CCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHh
Confidence 8765 555667899999999999999999999887543
No 324
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.51 E-value=9.4e-15 Score=136.85 Aligned_cols=137 Identities=15% Similarity=0.097 Sum_probs=93.5
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcC--C-CceEecceEeCCcceeEeeeeccccc------ccc
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVEC--D-PPYTINTTTVYGQEKYLVLKEILVRD------EQL 477 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~--~-~~~~i~~~~v~Gqe~~~~l~~~~~~~------v~d 477 (608)
...+||+++|++|||||||+++++++.+. .+.+|++.... . ..+.+.-.+++|+++|..++..++++ |||
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d 92 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVID 92 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEE
Confidence 45699999999999999999999998664 34455543100 0 12333444559999998887777666 788
Q ss_pred cCCCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCC-------CceEEc--cCCCH
Q psy3301 478 PVLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLS-------PAHSFS--AANND 539 (608)
Q Consensus 478 ~~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~-------~~~~~S--~~~~v 539 (608)
+++.+ ..+. +.....++|+++||||+|+.+.+. .+++++.+++. +++++| ++.|+
T Consensus 93 --~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 165 (181)
T 1fzq_A 93 --SADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP-----ASEIAEGLNLHTIRDRVWQIQSCSALTGEGV 165 (181)
T ss_dssp --TTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC-----HHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred --CcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC-----HHHHHHHhCchhccCCceEEEEccCCCCCCH
Confidence 77654 2222 111236899999999999976432 23444443321 367888 89999
Q ss_pred HHHHHHHHHHHc
Q psy3301 540 REVFVKLATMAA 551 (608)
Q Consensus 540 ~e~F~~l~~~a~ 551 (608)
+++|..|++.+.
T Consensus 166 ~~l~~~l~~~~~ 177 (181)
T 1fzq_A 166 QDGMNWVCKNVN 177 (181)
T ss_dssp HHHHHHHHHTC-
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
No 325
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.51 E-value=2.8e-14 Score=132.60 Aligned_cols=142 Identities=13% Similarity=0.097 Sum_probs=95.3
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecce-----EeCCcceeEeeeeccccc------c
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINTT-----TVYGQEKYLVLKEILVRD------E 475 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~~-----~v~Gqe~~~~l~~~~~~~------v 475 (608)
...++|+|+|++|||||||+++|+++.+...+.++.+.+.....+.+++. +++|+++|..++..++.. |
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 85 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILV 85 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEEE
Confidence 45689999999999999999999999988776655554222233444443 349999998887766655 6
Q ss_pred cccCCCCcc--cccc--cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCC--------CCceEEc--cCCCHHH
Q psy3301 476 QLPVLLPVD--VDCD--KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKL--------SPAHSFS--AANNDRE 541 (608)
Q Consensus 476 ~d~~l~~~~--~~~~--~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~--------~~~~~~S--~~~~v~e 541 (608)
|| +++.. ...+ +.....++|+++|+||+|+.+... ++..+..++.+. .+++++| ++.|+++
T Consensus 86 ~d--~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 160 (178)
T 2lkc_A 86 VA--ADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEANP---DRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDH 160 (178)
T ss_dssp EE--TTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSCH---HHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHH
T ss_pred EE--CCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCCH---HHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHH
Confidence 77 55522 1111 222346899999999999975311 111222222221 2478888 8999999
Q ss_pred HHHHHHHHHcCC
Q psy3301 542 VFVKLATMAAFP 553 (608)
Q Consensus 542 ~F~~l~~~a~~p 553 (608)
+|..|++.+..-
T Consensus 161 l~~~l~~~~~~~ 172 (178)
T 2lkc_A 161 LLEMILLVSEME 172 (178)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHhhhhh
Confidence 999999877543
No 326
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal binding protein; NMR {Entamoeba histolytica} SCOP: a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Probab=99.50 E-value=1.2e-14 Score=128.04 Aligned_cols=132 Identities=25% Similarity=0.305 Sum_probs=109.7
Q ss_pred HHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHHHhcCCCcch
Q psy3301 177 LTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQRGRSHTT 256 (608)
Q Consensus 177 L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~~~~~~~e~~ 256 (608)
++++|..+|.|++|.|+.+|+..+++. +|..++.+++..+...++.+ ++|.|++++|+.++.... .
T Consensus 2 l~~~F~~~D~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~D~~------~~g~i~~~ef~~~~~~~~-~------ 67 (134)
T 1jfj_A 2 AEALFKEIDVNGDGAVSYEEVKAFVSK-KRAIKNEQLLQLIFKSIDAD------GNGEIDQNEFAKFYGSIQ-G------ 67 (134)
T ss_dssp HHHHHHHHCTTCSSEEEHHHHHHHHHT-TCCSSHHHHHHHHHHHHCSS------CCSEEEHHHHHHHTTCSS-C------
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHH-cCCCCCHHHHHHHHHHHcCC------CCCeEcHHHHHHHHHHhc-c------
Confidence 678999999999999999999999987 78889999999999999888 799999999996642100 0
Q ss_pred hHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCCCCCCCCCccc
Q psy3301 257 WTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPECPPWTDRE 336 (608)
Q Consensus 257 w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~~~~~~~~~~~ 336 (608)
.. .....+.++.+|+.+|.|++|.|+.+|++.++...| ... ...
T Consensus 68 -------------------------------~~-~~~~~~~~~~~f~~~D~d~~G~i~~~e~~~~l~~~~--~~~--~~~ 111 (134)
T 1jfj_A 68 -------------------------------QD-LSDDKIGLKVLYKLMDVDGDGKLTKEEVTSFFKKHG--IEK--VAE 111 (134)
T ss_dssp -------------------------------CS-SHHHHHHHHHHHHHHCCSSSSEEEHHHHHHHHTTTT--CHH--HHH
T ss_pred -------------------------------cc-cCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHhC--HHH--HHH
Confidence 00 111234589999999999999999999999999886 222 688
Q ss_pred cccceecCCCCccchhhHHhHh
Q psy3301 337 MRAMVATNSKGWITMQGFLCYW 358 (608)
Q Consensus 337 ~~~~~d~~~~g~i~~~ef~~~w 358 (608)
++..+|.|++|.|+|+||+..+
T Consensus 112 ~~~~~D~~~dg~i~~~ef~~~l 133 (134)
T 1jfj_A 112 QVMKADANGDGYITLEEFLEFS 133 (134)
T ss_dssp HHHHHHCSSSSEEEHHHHHHHH
T ss_pred HHHHhCCCCCCcEeHHHHHHHh
Confidence 8899999999999999999764
No 327
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.50 E-value=4.4e-14 Score=132.55 Aligned_cols=136 Identities=13% Similarity=0.052 Sum_probs=94.4
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCC---CceEecceEeCCcceeEeeeeccccc------ccc
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECD---PPYTINTTTVYGQEKYLVLKEILVRD------EQL 477 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~---~~~~i~~~~v~Gqe~~~~l~~~~~~~------v~d 477 (608)
+..+||+|+|++|||||||+++++++. ...+.+|++..... ..+.+.-++++|+++|..++..+++. |||
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 94 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD 94 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEE
Confidence 456999999999999999999999988 55565565531000 12333444559999998888777766 788
Q ss_pred cCCCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHc--------CCCCceEEc--cCCC
Q psy3301 478 PVLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETH--------KLSPAHSFS--AANN 538 (608)
Q Consensus 478 ~~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~--------~~~~~~~~S--~~~~ 538 (608)
+++.+ ..+. +.....++|+++|+||+||.+... .+++.+.+ ++ +++++| ++.|
T Consensus 95 --~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g 166 (186)
T 1ksh_A 95 --SADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS-----CNAIQEALELDSIRSHHW-RIQGCSAVTGED 166 (186)
T ss_dssp --TTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-----HHHHHHHTTGGGCCSSCE-EEEECCTTTCTT
T ss_pred --CcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCC-----HHHHHHHhChhhccCCce-EEEEeeCCCCCC
Confidence 76654 2222 112236899999999999976422 23333333 23 377888 8999
Q ss_pred HHHHHHHHHHHHc
Q psy3301 539 DREVFVKLATMAA 551 (608)
Q Consensus 539 v~e~F~~l~~~a~ 551 (608)
++++|..|++.+.
T Consensus 167 i~~l~~~l~~~i~ 179 (186)
T 1ksh_A 167 LLPGIDWLLDDIS 179 (186)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999874
No 328
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.49 E-value=5.8e-14 Score=131.15 Aligned_cols=137 Identities=13% Similarity=0.028 Sum_probs=90.4
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCC---CceEecceEeCCcceeEeeeeccccc------ccc
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECD---PPYTINTTTVYGQEKYLVLKEILVRD------EQL 477 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~---~~~~i~~~~v~Gqe~~~~l~~~~~~~------v~d 477 (608)
+..+||+|+|++|||||||+++++++.+ ..+.+|++..... ..+.+.-++++|+++|..++..+++. |||
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 94 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVD 94 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 4569999999999999999999998887 3454555541100 12333445559999988887777766 778
Q ss_pred cCCCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCC-------CceEEc--cCCCH
Q psy3301 478 PVLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLS-------PAHSFS--AANND 539 (608)
Q Consensus 478 ~~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~-------~~~~~S--~~~~v 539 (608)
+++.+ .... +.....++|+++|+||+||.+.. ..+++.+..+.. +++++| ++.|+
T Consensus 95 --~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi 167 (183)
T 1moz_A 95 --STDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL-----SASEVSKELNLVELKDRSWSIVASSAIKGEGI 167 (183)
T ss_dssp --TTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCC-----CHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTH
T ss_pred --CCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCC-----CHHHHHHHhCcccccCCceEEEEccCCCCcCH
Confidence 66553 2221 11224789999999999997532 233444443321 368888 89999
Q ss_pred HHHHHHHHHHHc
Q psy3301 540 REVFVKLATMAA 551 (608)
Q Consensus 540 ~e~F~~l~~~a~ 551 (608)
+++|..|++.+.
T Consensus 168 ~~l~~~l~~~~~ 179 (183)
T 1moz_A 168 TEGLDWLIDVIK 179 (183)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998763
No 329
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.49 E-value=6.6e-14 Score=149.58 Aligned_cols=135 Identities=18% Similarity=0.122 Sum_probs=93.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCC---c---------CCCCCc------------------ceEecC---ccCC
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPE---L---------VPSKAE------------------EITIPP---DVTP 54 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~---~---------~~~~~~------------------~~~i~~---~~~~ 54 (608)
+..+||+++|+.++|||||+++|++..... . .+++.. ..++.. .+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 446899999999999999999998764211 0 011100 011110 1233
Q ss_pred CceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCC-cEEEEEeCcCCCCCC--
Q psy3301 55 EMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCL-PIVLVGNKVDLVDYS-- 131 (608)
Q Consensus 55 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~-piilv~nK~Dl~~~~-- 131 (608)
.+..+.||||||+++|...+..++..+|++|+|+|+++....+.. .|+..+.. .++ |+|+|+||+|+....
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~--~~l~~~~~----~~~~~iIvviNK~Dl~~~~~~ 175 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTR--RHSYIASL----LGIKHIVVAINKMDLNGFDER 175 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHH--HHHHHHHH----TTCCEEEEEEECTTTTTSCHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH--HHHHHHHH----cCCCeEEEEEEcCcCCcccHH
Confidence 567899999999999998888999999999999999987543332 34444442 134 699999999997521
Q ss_pred ----------------------C--cccCcccCcCHHHHHH
Q psy3301 132 ----------------------T--VESSAKTLKNISEMFY 148 (608)
Q Consensus 132 ----------------------~--~e~SAk~~~~i~~lf~ 148 (608)
. +++||++|.|+.+++.
T Consensus 176 ~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 176 VFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp HHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred HHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence 0 6788888888877653
No 330
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.49 E-value=1.8e-14 Score=149.80 Aligned_cols=141 Identities=16% Similarity=0.238 Sum_probs=81.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHcCC-CCCcCC--------CCCcceEecCcc--CCCceeEEEEeCCCC-------CCCh
Q psy3301 10 NVRILLLGDRHVGKTSLILSLVSEE-FPELVP--------SKAEEITIPPDV--TPEMVPTHIVDYSEV-------DQTV 71 (608)
Q Consensus 10 ~~kI~lvG~~~vGKTSLi~~l~~~~-~~~~~~--------~~~~~~~i~~~~--~~~~~~~~i~Dt~G~-------~~~~ 71 (608)
.++|+|+|++|+|||||+++|.+.. +..... ++.........+ ....+.+.+|||+|+ +.+.
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~ 116 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 116 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------C
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHH
Confidence 5899999999999999999987654 322221 111111111122 233457999999998 5555
Q ss_pred HHHH-------HHHHhcCcE-----------EEEEEcCC-hhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC
Q psy3301 72 DELT-------EEIQKAHVI-----------CLVYSVVD-DASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST 132 (608)
Q Consensus 72 ~~~~-------~~~~~ad~i-----------ilV~d~~~-~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~ 132 (608)
.... .+++.++++ ++||++++ ..++..+...|+..+ ..++|+|+|+||+|+.....
T Consensus 117 ~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l-----~~~~piIlV~NK~Dl~~~~e 191 (361)
T 2qag_A 117 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-----HNKVNIVPVIAKADTLTLKE 191 (361)
T ss_dssp CTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-----CS-SCEEEEEECCSSSCHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-----ccCCCEEEEEECCCCCCHHH
Confidence 5544 777777665 48888876 566666665565544 35789999999999975321
Q ss_pred -------------------cccCcccCcCHHHHHHHHHHHHhC
Q psy3301 133 -------------------VESSAKTLKNISEMFYYAQKAVLH 156 (608)
Q Consensus 133 -------------------~e~SAk~~~~i~~lf~~l~~~i~~ 156 (608)
+++||+++.| ++.|..+.+.+..
T Consensus 192 v~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~ 233 (361)
T 2qag_A 192 RERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKA 233 (361)
T ss_dssp HHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHh
Confidence 8999999998 8888888777754
No 331
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.48 E-value=2.6e-14 Score=134.76 Aligned_cols=138 Identities=13% Similarity=0.060 Sum_probs=94.8
Q ss_pred CCceEEEEEEccCCCchHHHHHHHhcCC-CCCCCCCCCCCCcCCCc-----eEecceEeCCcceeEeeeeccccc-----
Q psy3301 406 TRNVYVCHVIGNRSTGKTALCQSILRKH-HDSSKTSITSPVECDPP-----YTINTTTVYGQEKYLVLKEILVRD----- 474 (608)
Q Consensus 406 ~r~~~k~~viG~~gvGKTsll~~f~~~~-~~~~~~~t~~~~~~~~~-----~~i~~~~v~Gqe~~~~l~~~~~~~----- 474 (608)
....+||+|+|++|||||||+++|+++. +...+.+|.+. .... +.+.-++++|+++|..++..+++.
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGF--SIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAII 95 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSE--EEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccce--eEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 3456999999999999999999999988 56666555543 1122 233444559999998888877776
Q ss_pred -ccccCCCCcc--cccc-------cccCC--CCCcEEEEEeCCCCCcchhcccccHHHHHH--H---cCCCCceEEc--c
Q psy3301 475 -EQLPVLLPVD--VDCD-------KYFST--SKIPVMLVAGKSDMPRARQDYLMQPDIFCE--T---HKLSPAHSFS--A 535 (608)
Q Consensus 475 -v~d~~l~~~~--~~~~-------~~~~~--~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~--~---~~~~~~~~~S--~ 535 (608)
||| +++.+ ..+. +.... .++|+++|+||+||.+.. ..++..++++ . .++ +++++| +
T Consensus 96 ~v~d--~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 170 (190)
T 2h57_A 96 FVID--SSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAV--TSVKVSQLLCLENIKDKPW-HICASDAIK 170 (190)
T ss_dssp EEEE--TTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCC--CHHHHHHHHTGGGCCSSCE-EEEECBTTT
T ss_pred EEEE--CCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCC--CHHHHHHHhChhhccCCce-EEEEccCCC
Confidence 788 76654 2222 11112 689999999999997532 2334444443 1 233 378888 8
Q ss_pred CCCHHHHHHHHHHHH
Q psy3301 536 ANNDREVFVKLATMA 550 (608)
Q Consensus 536 ~~~v~e~F~~l~~~a 550 (608)
+.|++++|..|++.+
T Consensus 171 ~~gi~~l~~~l~~~i 185 (190)
T 2h57_A 171 GEGLQEGVDWLQDQI 185 (190)
T ss_dssp TBTHHHHHHHHHHHC
T ss_pred CcCHHHHHHHHHHHH
Confidence 999999999999876
No 332
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.48 E-value=4.4e-14 Score=147.13 Aligned_cols=128 Identities=11% Similarity=0.110 Sum_probs=94.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEcC
Q psy3301 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSVV 91 (608)
Q Consensus 12 kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~ 91 (608)
+|+++|++++|||||+++|+.... +..... ..+...+..+.||||||+++|...+...++.+|++|+|+| +
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~~gi------Ti~~~~--~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~ 93 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGKKGT------SSDITM--YNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-P 93 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSEEEE------ESSSEE--EEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-T
T ss_pred EEEEECCCCCCHHHHHHHHHhCCE------EEEeeE--EEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-C
Confidence 899999999999999999981110 001011 1234456779999999999999888899999999999999 5
Q ss_pred ChhhHHHHHHhHHHHHhhhccCCCCcE-EEEEe-CcCCCCCCC----------------------cc--cCccc---CcC
Q psy3301 92 DDASIDRLSSHWLPFLRNCLVDTCLPI-VLVGN-KVDLVDYST----------------------VE--SSAKT---LKN 142 (608)
Q Consensus 92 ~~~s~~~~~~~~~~~i~~~~~~~~~pi-ilv~n-K~Dl~~~~~----------------------~e--~SAk~---~~~ 142 (608)
+. .+.... .|...+.. .++|. ++|+| |+|+ +... ++ +||++ +.|
T Consensus 94 ~g-~~~qt~-e~~~~~~~----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g 166 (370)
T 2elf_A 94 QG-LDAHTG-ECIIALDL----LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG 166 (370)
T ss_dssp TC-CCHHHH-HHHHHHHH----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred CC-CcHHHH-HHHHHHHH----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence 43 333333 34444442 25777 89999 9998 4210 66 99999 999
Q ss_pred HHHHHHHHHHHHh
Q psy3301 143 ISEMFYYAQKAVL 155 (608)
Q Consensus 143 i~~lf~~l~~~i~ 155 (608)
++++++.+.+.+.
T Consensus 167 i~~L~~~l~~~~~ 179 (370)
T 2elf_A 167 VDELKARINEVAE 179 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcc
Confidence 9999998877653
No 333
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.48 E-value=9.5e-15 Score=137.35 Aligned_cols=139 Identities=13% Similarity=0.104 Sum_probs=96.6
Q ss_pred eEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEec---ceEeCC-----------cceeEeeeeccccc
Q psy3301 409 VYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTIN---TTTVYG-----------QEKYLVLKEILVRD 474 (608)
Q Consensus 409 ~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~---~~~v~G-----------qe~~~~l~~~~~~~ 474 (608)
++||+|+|++|||||||+++|+++.+...+.++.+. ....+.++ -++++| +++|..+...+++.
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~--~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (190)
T 2cxx_A 1 MATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTR--KIIEIEWKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIED 78 (190)
T ss_dssp -CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTT--SCEEEEETTEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccc--eeEEEecCCEEEEECCCccccccCCHHHHHHHHHHHHHHHHh
Confidence 479999999999999999999999987766544332 11223222 344578 77777666555442
Q ss_pred -------ccccCCCCcc--ccc-c---------------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCC-
Q psy3301 475 -------EQLPVLLPVD--VDC-D---------------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLS- 528 (608)
Q Consensus 475 -------v~d~~l~~~~--~~~-~---------------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~- 528 (608)
+|+ +.+.. ..+ . +.....++|+++|+||+|+...+ .++.++++++++++
T Consensus 79 ~~~~~~~v~~--v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~ 153 (190)
T 2cxx_A 79 NAKNIDVAVL--VVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVPL 153 (190)
T ss_dssp HGGGCCEEEE--EEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCCG
T ss_pred hhccCCEEEE--EEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhhh
Confidence 444 44433 111 1 11223689999999999998654 45688999999985
Q ss_pred -----CceEEc--cCCCHHHHHHHHHHHHcCCC
Q psy3301 529 -----PAHSFS--AANNDREVFVKLATMAAFPR 554 (608)
Q Consensus 529 -----~~~~~S--~~~~v~e~F~~l~~~a~~p~ 554 (608)
+++++| ++.|++++|..|++.+...+
T Consensus 154 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 186 (190)
T 2cxx_A 154 SEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ 186 (190)
T ss_dssp GGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred hccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence 248888 89999999999999885544
No 334
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.48 E-value=4.8e-13 Score=136.75 Aligned_cols=143 Identities=17% Similarity=0.172 Sum_probs=92.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCcC----CCCCcc-eEecC---------------------------------
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELV----PSKAEE-ITIPP--------------------------------- 50 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~----~~~~~~-~~i~~--------------------------------- 50 (608)
...+|+|+|++|||||||+++|++..+.+.. +..... .+...
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEI 102 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHH
Confidence 4578999999999999999999998863221 111000 00000
Q ss_pred ------------c----------cCCCceeEEEEeCCCCCC-------------ChHHHHHHHHhcCcEEEEEEcCChh-
Q psy3301 51 ------------D----------VTPEMVPTHIVDYSEVDQ-------------TVDELTEEIQKAHVICLVYSVVDDA- 94 (608)
Q Consensus 51 ------------~----------~~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~ad~iilV~d~~~~~- 94 (608)
. ..+....+.||||||... +......+++.+|++++|+|.++..
T Consensus 103 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~ 182 (315)
T 1jwy_B 103 IRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL 182 (315)
T ss_dssp HHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS
T ss_pred HHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcch
Confidence 0 122346799999999754 3344577889999999999975432
Q ss_pred hHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC--------------------cccCccc---CcCHHHHHHHHH
Q psy3301 95 SIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST--------------------VESSAKT---LKNISEMFYYAQ 151 (608)
Q Consensus 95 s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------------------~e~SAk~---~~~i~~lf~~l~ 151 (608)
+-.... .+...+. ..+.|+++|+||+|+..... ..+||.+ +.|+.+++..+.
T Consensus 183 ~~~~~~-~i~~~~~----~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~ 257 (315)
T 1jwy_B 183 ANSDAL-QLAKEVD----PEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEI 257 (315)
T ss_dssp TTCSHH-HHHHHHC----SSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHH
T ss_pred hhhHHH-HHHHHhC----CCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHH
Confidence 101111 2333333 34789999999999864321 4456666 788999998887
Q ss_pred HHHhC
Q psy3301 152 KAVLH 156 (608)
Q Consensus 152 ~~i~~ 156 (608)
+.+..
T Consensus 258 ~~~~~ 262 (315)
T 1jwy_B 258 LYFKN 262 (315)
T ss_dssp HHHHT
T ss_pred HHHhC
Confidence 77643
No 335
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding protein, CBP40, metal binding protein; 3.00A {Physarum polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Probab=99.48 E-value=7.3e-15 Score=150.58 Aligned_cols=179 Identities=15% Similarity=0.196 Sum_probs=131.4
Q ss_pred ccChHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHH
Q psy3301 167 QELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNL 246 (608)
Q Consensus 167 ~~l~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~ 246 (608)
..+++.....|+.+|..+|.|++|.|+..|+..+++. +|..++..++..++..++.+ ++|.|+|.+|+.+...
T Consensus 114 ~~Ls~~e~~~l~~~F~~~D~d~dG~Is~~El~~~L~~-lg~~~~~~~i~~l~~~~D~d------~~G~I~f~ef~~l~~~ 186 (323)
T 1ij5_A 114 PMLSEEDTNILRQLFLSSAVSGSGKFSFQDLKQVLAK-YADTIPEGPLKKLFVMVEND------TKGRMSYITLVAVAND 186 (323)
T ss_dssp CCCCHHHHHHHHHHHTSSSSTTSSCCCHHHHHHHHHH-HHTTSCSSHHHHHHHHHHHC------CSSTHHHHHHTTSHHH
T ss_pred HhCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHH-cCCCCCHHHHHHHHHHhcCC------CCCcCcHHHHHhhhhH
Confidence 4678889999999999999999999999999999997 78899999999999999998 6788888888765421
Q ss_pred HHhcCCCcchhHHhhhccCCCCcccccccc------------------CCCCCCCCCCccccCHhHH-------HHHHHH
Q psy3301 247 FMQRGRSHTTWTVLRKFGYNEDLQISKEFL------------------HPPLNIPATCTAELSDKGQ-------QFLTTL 301 (608)
Q Consensus 247 ~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~------------------~p~~~~~~~~~~eLs~~~~-------~~l~~~ 301 (608)
. +....+++.|.-+.+-.|+.+-+ +..+ ..+....++.... ..+..+
T Consensus 187 ~------~~l~~~F~~~D~d~dG~Is~~El~~~l~g~~~~~~ei~~~l~~~~--D~d~dG~Is~~EF~~~l~~~~~l~~~ 258 (323)
T 1ij5_A 187 L------AALVADFRKIDTNSNGTLSRKEFREHFVRLGFDKKSVQDALFRYA--DEDESDDVGFSEYVHLGLCLLVLRIL 258 (323)
T ss_dssp H------HTSCCCHHHHCTTCCSEECHHHHHHHHHHTTCCCHHHHHHHHHHH--CTTCSSCEEHHHHHHHHHHHHHHHHH
T ss_pred H------HHHHHHHHHHCCCCCCcCcHHHHHHHHcCCCCCHHHHHHHHHHHh--cCCCCCEEeHHHHHHHHHHHHHHHHH
Confidence 1 11222334444333322221111 0011 1112222333221 137888
Q ss_pred HhhhcCCCCCCCCHHHHHHhh-ccCCCCCCCCCccccccceecCCCCccchhhHHhHhhh
Q psy3301 302 FYRFDKDGDGALSPEEQARLF-SLCPPECPPWTDREMRAMVATNSKGWITMQGFLCYWIL 360 (608)
Q Consensus 302 F~~fD~d~dG~ls~~El~~~~-~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~ 360 (608)
|+.||.|++|+|+.+||+.++ ..+|...++.++..++..+|.|+||.|+|++|+..+.-
T Consensus 259 F~~~D~d~dG~Is~~El~~~l~~~~g~~ls~~e~~~l~~~~D~d~dG~Is~~EF~~~~~~ 318 (323)
T 1ij5_A 259 YAFADFDKSGQLSKEEVQKVLEDAHIPESARKKFEHQFSVVDVDDSKSLSYQEFVMLVLL 318 (323)
T ss_dssp HHHTCSSSCSSEEHHHHHHHHHHTTCCGGGCSTHHHHHHHHTTTTCSEECHHHHHHHHHH
T ss_pred HHHhCCCCCCCccHHHHHHHHHHHcCCCCCHHHHHHHHHHHCCCCCCcEeHHHHHHHHHH
Confidence 999999999999999999999 88875566677899999999999999999999988653
No 336
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=99.48 E-value=2.2e-14 Score=156.19 Aligned_cols=141 Identities=24% Similarity=0.270 Sum_probs=115.7
Q ss_pred hHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhccc-------CCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHH
Q psy3301 170 TPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCF-------DAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLF 242 (608)
Q Consensus 170 ~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~-------g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~ 242 (608)
+++..+.++++|..+|.|+||.|+.+|+..+++... +..++.++++.+++.+|.+ ++|.|+|+||+.
T Consensus 341 ~~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d------~~G~I~~~EF~~ 414 (494)
T 3lij_A 341 SQEETKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFD------RNGYIDYSEFVT 414 (494)
T ss_dssp CHHHHHHHHHHHHHHCTTCSSEECHHHHHHTTHHHHSSCCCCC--CHHHHHHHHHHHHHCTT------CSSSEEHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcCCCCeEcHHHHHHHHHHhcccccccccccccHHHHHHHHHHhCCC------CCCcCcHHHHHH
Confidence 567788999999999999999999999999988632 2355688899999999988 899999999997
Q ss_pred HHHHHHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhh
Q psy3301 243 LHNLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLF 322 (608)
Q Consensus 243 l~~~~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~ 322 (608)
++...... ...+.++.+|+.||+|+||+|+.+||+.++
T Consensus 415 ~~~~~~~~------------------------------------------~~~~~~~~~F~~~D~d~~G~Is~~El~~~l 452 (494)
T 3lij_A 415 VAMDRKSL------------------------------------------LSKDKLESAFQKFDQDGNGKISVDELASVF 452 (494)
T ss_dssp HHSCHHHH------------------------------------------TCHHHHHHHHHHHCTTCSSEECHHHHHHHC
T ss_pred HHHhhhcc------------------------------------------ccHHHHHHHHHHHCCCCCCcCCHHHHHHHH
Confidence 75321100 013568899999999999999999999999
Q ss_pred ccCCCCCCCCCccccccceecCCCCccchhhHHhHhhh
Q psy3301 323 SLCPPECPPWTDREMRAMVATNSKGWITMQGFLCYWIL 360 (608)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~ 360 (608)
...+ ....+..++++.+|.|+||.|+|+||+..+.-
T Consensus 453 ~~~~--~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~~ 488 (494)
T 3lij_A 453 GLDH--LESKTWKEMISGIDSNNDGDVDFEEFCKMIQK 488 (494)
T ss_dssp -CCS--CCCHHHHHHHHTTCSSSSSSEEHHHHHHHHHH
T ss_pred HhcC--CCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 8744 55556789999999999999999999988754
No 337
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Probab=99.47 E-value=1.8e-14 Score=134.99 Aligned_cols=144 Identities=17% Similarity=0.144 Sum_probs=112.3
Q ss_pred cccccChHHHHHHHHHHHHhccC-----CC-C--CccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCC-
Q psy3301 164 SDKQELTPECIKALTRIFKVCDL-----DN-D--NLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNC- 234 (608)
Q Consensus 164 ~~~~~l~~~~~~~L~~~f~~~D~-----d~-d--g~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~- 234 (608)
.....+++..+..+.++|..+|. |+ + |.|+..|+.. ++. +|..++.+ +++..++.+ ++|.
T Consensus 9 ~~~~~ls~~~~~~l~~~F~~~D~~~~~~~~~~~~G~i~~~el~~-l~~-~g~~~~~~---~l~~~~D~d------~~G~~ 77 (183)
T 1dgu_A 9 QDLTFLTKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILS-LPE-LKANPFKE---RICRVFSTS------PAKDS 77 (183)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHSCSTTCSSCCCTTTCSCHHHHHT-STT-SSSCTTHH---HHHHHHSCS------SSSCC
T ss_pred HHHcCCCHHHHHHHHHHHHHhCccccccccccccCcCcHHHHHH-HHh-hhcCcHHH---HHHHHhCCC------CCCCE
Confidence 34456788899999999999999 67 8 9999999999 665 78777654 466667776 7899
Q ss_pred cchhhHHHHHHHHHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCC
Q psy3301 235 ITLNGFLFLHNLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALS 314 (608)
Q Consensus 235 i~~~~F~~l~~~~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls 314 (608)
|+|++|+.++...... ....+.++.+|+.||+|++|+|+
T Consensus 78 I~~~EF~~~~~~~~~~-----------------------------------------~~~~~~l~~~F~~~D~d~~G~I~ 116 (183)
T 1dgu_A 78 LSFEDFLDLLSVFSDT-----------------------------------------ATPDIKSHYAFRIFDFDDDGTLN 116 (183)
T ss_dssp CCHHHHHHHHHHHSTT-----------------------------------------CCHHHHHHHHHHHHCTTCSSEEE
T ss_pred ecHHHHHHHHHHhcCC-----------------------------------------CCHHHHHHHHHHHhCCCCCCcCC
Confidence 9999999876542111 00135789999999999999999
Q ss_pred HHHHHHhhccCCC-----CCCCCCcc----ccccceecCCCCccchhhHHhHhh
Q psy3301 315 PEEQARLFSLCPP-----ECPPWTDR----EMRAMVATNSKGWITMQGFLCYWI 359 (608)
Q Consensus 315 ~~El~~~~~~~~~-----~~~~~~~~----~~~~~~d~~~~g~i~~~ef~~~w~ 359 (608)
.+||+.++..++. ...+.+.. .++..+|.|++|.|+|+||+..+.
T Consensus 117 ~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~ 170 (183)
T 1dgu_A 117 REDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQHVIS 170 (183)
T ss_dssp HHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHHCTTSSSEEEHHHHHHHHC
T ss_pred HHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHH
Confidence 9999999988762 11122233 388889999999999999998764
No 338
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.47 E-value=1.1e-14 Score=136.89 Aligned_cols=142 Identities=9% Similarity=0.067 Sum_probs=95.2
Q ss_pred ceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceE-----ecceEeCCcceeE------eeeeccccc--
Q psy3301 408 NVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYT-----INTTTVYGQEKYL------VLKEILVRD-- 474 (608)
Q Consensus 408 ~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~-----i~~~~v~Gqe~~~------~l~~~~~~~-- 474 (608)
..+||+++|++|||||||++++++..+...+.++.+.+.....+. +.-++.+|+++|. .+...+++.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 85 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK 85 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhccC
Confidence 458999999999999999999999765433333333211112222 3334458988874 233333321
Q ss_pred ------ccccCCCCccccc--ccccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHH
Q psy3301 475 ------EQLPVLLPVDVDC--DKYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFV 544 (608)
Q Consensus 475 ------v~d~~l~~~~~~~--~~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~ 544 (608)
++| .++.+... .......++|+++|+||+|+...+.+. .+.++++++++++ ++++| ++.|++++|.
T Consensus 86 ~~~~i~v~d--~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~-~~~~Sa~~~~~v~~l~~ 161 (188)
T 2wjg_A 86 PDLVVNIVD--ATALERNLYLTLQLMEMGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVK-VVPLSAAKKMGIEELKK 161 (188)
T ss_dssp CSEEEEEEE--GGGHHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSC-EEECBGGGTBSHHHHHH
T ss_pred CCEEEEEec--chhHHHHHHHHHHHHhcCCCEEEEEEhhhccccccch-HHHHHHHHHhCCC-eEEEEecCCCCHHHHHH
Confidence 444 33322110 011224679999999999998766554 6889999999985 88999 8999999999
Q ss_pred HHHHHHcCC
Q psy3301 545 KLATMAAFP 553 (608)
Q Consensus 545 ~l~~~a~~p 553 (608)
.|++.+...
T Consensus 162 ~i~~~~~~~ 170 (188)
T 2wjg_A 162 AISIAVKDK 170 (188)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHhc
Confidence 999988543
No 339
>3a8r_A Putative uncharacterized protein; EF-hand, membrane, oxidoreductase, transmembrane, calcium BI protein; 2.40A {Oryza sativa japonica group}
Probab=99.47 E-value=2.7e-14 Score=133.54 Aligned_cols=137 Identities=14% Similarity=0.142 Sum_probs=107.3
Q ss_pred HHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHHHhcCCC
Q psy3301 174 IKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQRGRS 253 (608)
Q Consensus 174 ~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~~~~~~~ 253 (608)
...+++.|..+| +||.|+.+||..+ +|.++++..++.++..++..... ++|.|++++|+.++..... .
T Consensus 27 ~~~~~~~F~~~D--~dG~I~~~el~~~----lg~~~~~~~~~~i~~~~d~~~~~---~~~~i~~~ef~~~~~~~~~-~-- 94 (179)
T 3a8r_A 27 WAAVEKRFNQLQ--VDGVLLRSRFGKC----IGMDGSDEFAVQMFDSLARKRGI---VKQVLTKDELKDFYEQLTD-Q-- 94 (179)
T ss_dssp HHHHHHHHHHHC--BTTBEEGGGHHHH----HTCCSCHHHHHHHHHHHHHHHTC---CSSEECHHHHHHHHHHHHC-C--
T ss_pred HHHHHHHHhccC--CCCCCcHHHHHHH----HCCCCcHHHHHHHHHHHHHhccC---CCCCcCHHHHHHHHHHHcC-C--
Confidence 457888999999 7999999999884 57778888899999988864222 3678999999976543211 0
Q ss_pred cchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhc-cCCCC-C--
Q psy3301 254 HTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFS-LCPPE-C-- 329 (608)
Q Consensus 254 e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~-~~~~~-~-- 329 (608)
...+.++.+|+.||+|+||+|+.+||+.++. .+|.. .
T Consensus 95 ---------------------------------------~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~~g~~~~~~ 135 (179)
T 3a8r_A 95 ---------------------------------------GFDNRLRTFFDMVDKNADGRLTAEEVKEIIALSASANKLSK 135 (179)
T ss_dssp ---------------------------------------CHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHHHHTTHHHH
T ss_pred ---------------------------------------CHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHhccccccc
Confidence 1246799999999999999999999999998 77621 1
Q ss_pred ----CCCCccccccceecCCCCccchhhHHhHhhhh
Q psy3301 330 ----PPWTDREMRAMVATNSKGWITMQGFLCYWILT 361 (608)
Q Consensus 330 ----~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~~ 361 (608)
...++..+++.+|.|+||.|+|+||+..|.-.
T Consensus 136 ~~~~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~~~ 171 (179)
T 3a8r_A 136 IKERADEYTALIMEELDPTNLGYIEMEDLEALLLQS 171 (179)
T ss_dssp HHHHHHHHHHHHHHHHSTTCCSEECHHHHHHHHC--
T ss_pred cccchHHHHHHHHHHhCCCCCCcCcHHHHHHHHHhC
Confidence 22446788899999999999999999988653
No 340
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.47 E-value=1.3e-13 Score=137.84 Aligned_cols=119 Identities=14% Similarity=0.140 Sum_probs=81.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCc--CCCCCcceEecCccCCCceeEEEEeCCCCCCChH---HHHHHH----
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPEL--VPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVD---ELTEEI---- 78 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~---~~~~~~---- 78 (608)
...++|+++|++|+|||||+++|++..+... .+++ +.......+...+..+.||||||++.+.. .....+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSE-GPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCC-CSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCc-ceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 3579999999999999999999999886432 2222 22222223445678899999999876642 121222
Q ss_pred --HhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCC--CcEEEEEeCcCCCC
Q psy3301 79 --QKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTC--LPIVLVGNKVDLVD 129 (608)
Q Consensus 79 --~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~--~piilv~nK~Dl~~ 129 (608)
+.+|++++|+|++.. ++......|+..+... ...+ .|+++|+||+|+..
T Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~-~~~~~~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDS-FGKGIWNKAIVALTHAQFSP 168 (270)
T ss_dssp TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHH-HCGGGGGGEEEEEECCSCCC
T ss_pred hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHH-hCcccccCEEEEEECcccCC
Confidence 369999999998763 3444444677777642 1222 69999999999864
No 341
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.46 E-value=6.8e-14 Score=134.01 Aligned_cols=142 Identities=10% Similarity=0.089 Sum_probs=89.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcceEecCccCCCceeEEEEeCCCCCCC----------hHHHHH
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQT----------VDELTE 76 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~ 76 (608)
..+..+|+|+|++|||||||+++|++..+...+.++.........+...+ .+.+|||+|.... ......
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 101 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALGE 101 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHHHH
Confidence 34578999999999999999999998875433333222111111111111 5789999997532 222334
Q ss_pred HH---HhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC---------------------
Q psy3301 77 EI---QKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST--------------------- 132 (608)
Q Consensus 77 ~~---~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------------------- 132 (608)
++ +.++++++|+|++++.++... .....+. ..++|+++|+||+|+.+...
T Consensus 102 ~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~----~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~ 175 (210)
T 1pui_A 102 YLEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAV----DSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQV 175 (210)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHH----HTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEE
T ss_pred HHHhhhcccEEEEEEECCCCCchhHH--HHHHHHH----HcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCce
Confidence 44 468999999999987665431 1222222 13689999999999875310
Q ss_pred cccCcccCcCHHHHHHHHHHHHh
Q psy3301 133 VESSAKTLKNISEMFYYAQKAVL 155 (608)
Q Consensus 133 ~e~SAk~~~~i~~lf~~l~~~i~ 155 (608)
+++||+++.|++++++.+.+.+.
T Consensus 176 ~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 176 ETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHC
T ss_pred EEEeecCCCCHHHHHHHHHHHHh
Confidence 68999999999999999887763
No 342
>2zfd_A Calcineurin B-like protein 2; calcium binding protein, protein-protein complex, ATP-bindin kinase, nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP: a.39.1.5 PDB: 1uhn_A
Probab=99.46 E-value=6.5e-14 Score=136.11 Aligned_cols=145 Identities=13% Similarity=0.112 Sum_probs=112.4
Q ss_pred ccChHHHHHHHHHHHHhccCC--CCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHH
Q psy3301 167 QELTPECIKALTRIFKVCDLD--NDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLH 244 (608)
Q Consensus 167 ~~l~~~~~~~L~~~f~~~D~d--~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~ 244 (608)
..++++.+..++++|..+|.| ++|.|+.+|+..+++. .....+..++.++..++.+ ++|.|++++|+.++
T Consensus 40 ~~ls~~ei~~l~~~F~~~D~d~~~~G~I~~~El~~~l~~--~~~~~~~~~~~~f~~~D~d------~dG~I~~~Ef~~~~ 111 (226)
T 2zfd_A 40 TVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFK--TNKKESLFADRVFDLFDTK------HNGILGFEEFARAL 111 (226)
T ss_dssp SSCCHHHHHHHHHHHHHHHTSSSCSSSBCHHHHHHHHHS--CSSCCCHHHHHHHHHHCSS------CSSSBCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCcccCCCCeEcHHHHHHHHhc--cCcccHHHHHHHHHHHcCC------CCCcCcHHHHHHHH
Confidence 356788899999999999999 9999999999999875 3233344567799999888 89999999999776
Q ss_pred HHHHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhc-
Q psy3301 245 NLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFS- 323 (608)
Q Consensus 245 ~~~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~- 323 (608)
...... ....+.++.+|+.||.|++|+|+.+||+.++.
T Consensus 112 ~~~~~~-----------------------------------------~~~~~~l~~~F~~~D~d~~G~Is~~E~~~~l~~ 150 (226)
T 2zfd_A 112 SVFHPN-----------------------------------------APIDDKIHFSFQLYDLKQQGFIERQEVKQMVVA 150 (226)
T ss_dssp HHTSTT-----------------------------------------SCHHHHHHHHHHHHCTTSSSSEEHHHHHHHHHH
T ss_pred HHHccC-----------------------------------------CCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Confidence 432100 01246789999999999999999999999995
Q ss_pred ---cCCCCCCCCCcccc----ccceecCCCCccchhhHHhHhhh
Q psy3301 324 ---LCPPECPPWTDREM----RAMVATNSKGWITMQGFLCYWIL 360 (608)
Q Consensus 324 ---~~~~~~~~~~~~~~----~~~~d~~~~g~i~~~ef~~~w~~ 360 (608)
..|....+.+..++ ++.+|.|+||.|+|+||+....-
T Consensus 151 ~~~~~g~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~EF~~~~~~ 194 (226)
T 2zfd_A 151 TLAESGMNLKDTVIEDIIDKTFEEADTKHDGKIDKEEWRSLVLR 194 (226)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHHHCSSCSSEECHHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHh
Confidence 44533333333333 45889999999999999987653
No 343
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=99.46 E-value=4.4e-14 Score=153.48 Aligned_cols=140 Identities=21% Similarity=0.233 Sum_probs=112.4
Q ss_pred hHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhc---ccCCCCC-------hhhHHHHHHHHHHhcCCCccCCCCcchhh
Q psy3301 170 TPECIKALTRIFKVCDLDNDNLLSDKELNAFQRR---CFDAPLS-------RDSLEDVKIVIRKNINDGVSANNCITLNG 239 (608)
Q Consensus 170 ~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~---~~g~~~~-------~~el~~i~~~~~~~~~~~~~~~~~i~~~~ 239 (608)
+++..+.++++|..+|.|+||.|+.+|+..++.. .+|..++ +++++.+++.+|.+ ++|.|+|+|
T Consensus 330 ~~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~D~d------~~g~i~~~E 403 (484)
T 3nyv_A 330 SQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDFD------KNGYIEYSE 403 (484)
T ss_dssp HHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHHC----CGGGCSHHHHHHHHHHHHHHHTCC------TTSEEEHHH
T ss_pred cHHHHHHHHHHHHHhCcCCCceEeHHHHHHHHHHHhhhcccccccccccccHHHHHHHHHHhCCC------CCCeEeHHH
Confidence 4566778999999999999999999999554332 2577777 78899999999888 899999999
Q ss_pred HHHHHHHHHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHH
Q psy3301 240 FLFLHNLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQA 319 (608)
Q Consensus 240 F~~l~~~~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~ 319 (608)
|+.++..... ....+.++.+|+.||+|+||+|+.+||+
T Consensus 404 f~~~~~~~~~------------------------------------------~~~~~~~~~~F~~~D~d~dG~I~~~El~ 441 (484)
T 3nyv_A 404 FVTVAMDRKT------------------------------------------LLSRERLERAFRMFDSDNSGKISSTELA 441 (484)
T ss_dssp HHHHHHHHHH------------------------------------------HHHHHHHHHHHHHHCTTCCSEEEHHHHH
T ss_pred HHHHHHhccc------------------------------------------cCcHHHHHHHHHHHCCCCCCcCCHHHHH
Confidence 9977643211 1124678999999999999999999999
Q ss_pred HhhccCCCCCCCCCccccccceecCCCCccchhhHHhHhh
Q psy3301 320 RLFSLCPPECPPWTDREMRAMVATNSKGWITMQGFLCYWI 359 (608)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~ 359 (608)
.++...+ ....+.+++++.+|.|+||.|+|+||+....
T Consensus 442 ~~l~~~~--~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~~ 479 (484)
T 3nyv_A 442 TIFGVSD--VDSETWKSVLSEVDKNNDGEVDFDEFQQMLL 479 (484)
T ss_dssp HHHHHTT--CCHHHHHHHHHHHCTTCCSEEEHHHHHHHHH
T ss_pred HHHHhcC--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHH
Confidence 9998754 5555578899999999999999999998764
No 344
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand, calcium-binding protein, guanylyl cyclase regulation, lyase; NMR {Bos taurus} SCOP: a.39.1.5
Probab=99.45 E-value=8.7e-14 Score=132.72 Aligned_cols=142 Identities=18% Similarity=0.188 Sum_probs=114.9
Q ss_pred ChHHHHHHHHHHHHhccCC-CCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHH
Q psy3301 169 LTPECIKALTRIFKVCDLD-NDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLF 247 (608)
Q Consensus 169 l~~~~~~~L~~~f~~~D~d-~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~ 247 (608)
.+.-..+.++++|..+|.| ++|.|+.+|+..+++. +|.+++.++++.++..++.+ ++|.|++++|+.++...
T Consensus 16 ~t~~~~~el~~~f~~~D~~~~~G~i~~~e~~~~l~~-~~~~~~~~~~~~~f~~~D~d------~~G~i~~~Ef~~~~~~~ 88 (204)
T 1jba_A 16 VGAADAAQLQEWYKKFLEECPSGTLFMHEFKRFFKV-PDNEEATQYVEAMFRAFDTN------GDNTIDFLEYVAALNLV 88 (204)
T ss_dssp CCHHHHHHHHHHHHHHHSSSTTCCEEHHHHHHHHHC-CSSSTTHHHHHHHHHHHCCS------SSSEECHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHH-hcCCCcHHHHHHHHHHHcCC------CCCeEeHHHHHHHHHHH
Confidence 3345677889999999999 8999999999999997 67788899999999999988 89999999999776532
Q ss_pred HhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccC--
Q psy3301 248 MQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLC-- 325 (608)
Q Consensus 248 ~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~-- 325 (608)
... . ..+.++.+|+.||.|++|+|+.+||..++...
T Consensus 89 ~~~-~-----------------------------------------~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~ 126 (204)
T 1jba_A 89 LRG-T-----------------------------------------LEHKLKWTFKIYDKDRNGCIDRQELLDIVESIYK 126 (204)
T ss_dssp SSC-C-----------------------------------------CTHHHHHHHHHHCSSCSSCBCHHHHHHHHHHHHH
T ss_pred ccC-C-----------------------------------------HHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 110 0 02468889999999999999999999998765
Q ss_pred --CC---CC---------CC-CCccccccceecCCCCccchhhHHhHhh
Q psy3301 326 --PP---EC---------PP-WTDREMRAMVATNSKGWITMQGFLCYWI 359 (608)
Q Consensus 326 --~~---~~---------~~-~~~~~~~~~~d~~~~g~i~~~ef~~~w~ 359 (608)
|. .. .+ .....+++.+|.|++|.|+|+||+..+.
T Consensus 127 ~~g~~~~~~~~~~~g~~~~~~~~~~~~f~~~D~d~dG~Is~~Ef~~~~~ 175 (204)
T 1jba_A 127 LKKACSVEVEAEQQGKLLTPEEVVDRIFLLVDENGDGQLSLNEFVEGAR 175 (204)
T ss_dssp HHHHSSCCTTSSTTTCCCCHHHHHHHHHHHHCCSCCSCBCHHHHHHHHT
T ss_pred HhCCCCccccccccCchhhHHHHHHHHHHHhCCCCCCeEcHHHHHHHHH
Confidence 20 00 11 2356778889999999999999998875
No 345
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.45 E-value=1.6e-13 Score=154.24 Aligned_cols=118 Identities=15% Similarity=0.164 Sum_probs=85.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHc--CCCCCc--CCC---C--------CcceEec---CccCCCceeEEEEeCCCCC
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVS--EEFPEL--VPS---K--------AEEITIP---PDVTPEMVPTHIVDYSEVD 68 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~--~~~~~~--~~~---~--------~~~~~i~---~~~~~~~~~~~i~Dt~G~~ 68 (608)
..+..+|+|+|++|+|||||+++|+. +.+... +.. . ....++. ..+...++.++||||||+.
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 86 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHV 86 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCS
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCc
Confidence 45578999999999999999999995 222100 000 0 0011111 1133456889999999999
Q ss_pred CChHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCC
Q psy3301 69 QTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDY 130 (608)
Q Consensus 69 ~~~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 130 (608)
++...+...++.+|++|+|+|+++..+.+... .|.. +.. .++|+++|+||+|+...
T Consensus 87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~-~~~~-~~~----~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTET-VWRQ-ATT----YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHH-HHHH-HHH----TTCCEEEEEECTTSTTC
T ss_pred chHHHHHHHHHHCCEEEEEECCCCCCcHHHHH-HHHH-HHH----cCCCEEEEEECCCcccc
Confidence 99999999999999999999999988877665 5544 332 37899999999998653
No 346
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.45 E-value=2.1e-14 Score=154.54 Aligned_cols=120 Identities=18% Similarity=0.151 Sum_probs=68.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCC--CCCc---------------------CCC-----CCcceEecC---ccCCCc
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEE--FPEL---------------------VPS-----KAEEITIPP---DVTPEM 56 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~--~~~~---------------------~~~-----~~~~~~i~~---~~~~~~ 56 (608)
+..++|+++|+.++|||||+++|+... +... ... .....|+.. .+...+
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 456899999999999999999997522 2100 000 001112211 234456
Q ss_pred eeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEcCCh---hhHHHHHHhHHHHHhhhccCCCCc-EEEEEeCcCCCC
Q psy3301 57 VPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSVVDD---ASIDRLSSHWLPFLRNCLVDTCLP-IVLVGNKVDLVD 129 (608)
Q Consensus 57 ~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~~~---~s~~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~ 129 (608)
..+.||||||+++|...+...+..+|++|+|+|+++. .+|+... .|.+.+.. ....++| +|+|+||+|+..
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~-qt~e~l~~-~~~~~vp~iivviNK~Dl~~ 195 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGG-QTREHAVL-ARTQGINHLVVVINKMDEPS 195 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTC-CHHHHHHH-HHHTTCSSEEEEEECTTSTT
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCC-cHHHHHHH-HHHcCCCEEEEEEECccCCC
Confidence 7899999999999998888899999999999999986 2333211 22222221 1224677 999999999954
No 347
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR {Rattus norvegicus} PDB: 2g9b_A
Probab=99.45 E-value=5.1e-14 Score=139.57 Aligned_cols=146 Identities=14% Similarity=0.195 Sum_probs=110.7
Q ss_pred HHHHHHHHHhccCCCCCccCHHHHHHHhhccc---CCCCChhhHHH----HHHHHHHhcCCCccCCCCcchhhHHHHHHH
Q psy3301 174 IKALTRIFKVCDLDNDNLLSDKELNAFQRRCF---DAPLSRDSLED----VKIVIRKNINDGVSANNCITLNGFLFLHNL 246 (608)
Q Consensus 174 ~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~---g~~~~~~el~~----i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~ 246 (608)
...++++|..+|.|++|.|+.+|+..+++.+. |.+++.++++. ++..++.+ ++|.|+|++|+.++..
T Consensus 102 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~d~~------~dg~i~~~ef~~~~~~ 175 (263)
T 2f33_A 102 CEEFMKTWRKYDTDHSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSN------NDGKLELTEMARLLPV 175 (263)
T ss_dssp HHHHHHHHTTSSTTTCSSBCHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTCSS------SSSCBCHHHHHHHSCT
T ss_pred HHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCC------CCCeEcHHHHHHHHHH
Confidence 45689999999999999999999999988743 88899998887 66666655 7899999999866431
Q ss_pred HHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCC
Q psy3301 247 FMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCP 326 (608)
Q Consensus 247 ~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~ 326 (608)
. ... +++ .. -.....+.++.+|+.||+|++|+|+.+||+.++..++
T Consensus 176 ~----~~~----~~~---------~~-----------------~~~~~~~~~~~~F~~~D~d~~G~is~~El~~~l~~~~ 221 (263)
T 2f33_A 176 Q----ENF----LLK---------FQ-----------------GIKMCGKEFNKAFELYDQDGNGYIDENELDALLKDLC 221 (263)
T ss_dssp T----TCS----HHH---------HH-----------------HTCCCHHHHHHHHHHHCCSSSSCEEHHHHHHHHHHHH
T ss_pred H----HHH----HHH---------hc-----------------CcchHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHH
Confidence 0 000 000 00 0000135688999999999999999999999998775
Q ss_pred C----CCCCCCccccccc-eecCCCCccchhhHHhHhh
Q psy3301 327 P----ECPPWTDREMRAM-VATNSKGWITMQGFLCYWI 359 (608)
Q Consensus 327 ~----~~~~~~~~~~~~~-~d~~~~g~i~~~ef~~~w~ 359 (608)
. ..++.+...++.. +|.|+||.|+|+||+....
T Consensus 222 ~~~~~~~~~~e~~~~~~~~~D~d~dG~i~~~EF~~~~~ 259 (263)
T 2f33_A 222 EKNKQELDINNISTYKKNIMALSDGGKLYRTDLALILS 259 (263)
T ss_dssp HHCTTTCCTTTHHHHHHHHHTTSBTTEECGGGTHHHHC
T ss_pred HhcCCCCCHHHHHHHHHHhhccCCCCeEcHHHHHHHHh
Confidence 3 3555667777776 6999999999999998653
No 348
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.45 E-value=8.7e-14 Score=159.35 Aligned_cols=145 Identities=21% Similarity=0.215 Sum_probs=101.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCC-------CCC--cCCCC----CcceEe---cCccCCCceeEEEEeCCCCCCC
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEE-------FPE--LVPSK----AEEITI---PPDVTPEMVPTHIVDYSEVDQT 70 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~-------~~~--~~~~~----~~~~~i---~~~~~~~~~~~~i~Dt~G~~~~ 70 (608)
.+..++|+++|++++|||||+++|++.. +.. ..+.. ....++ ...+...+..+.||||||+++|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 3457999999999999999999998741 110 01100 011121 1123445678999999999999
Q ss_pred hHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCc-EEEEEeCcCCCCCC------------------
Q psy3301 71 VDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLP-IVLVGNKVDLVDYS------------------ 131 (608)
Q Consensus 71 ~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~------------------ 131 (608)
...+...++.+|++|+|+|+++....+.. .|+..+.. .++| +|+|+||+|+....
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~QTr--EhL~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G 446 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMPQTR--EHILLGRQ----VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYD 446 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCTTHH--HHHHHHHH----HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcHHHH--HHHHHHHH----cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcc
Confidence 88888889999999999999986443332 23344442 2678 79999999997521
Q ss_pred ------C-cccCcccC--------cCHHHHHHHHHHHHhCC
Q psy3301 132 ------T-VESSAKTL--------KNISEMFYYAQKAVLHP 157 (608)
Q Consensus 132 ------~-~e~SAk~~--------~~i~~lf~~l~~~i~~~ 157 (608)
. +++||++| .||.++++.+.+.+..|
T Consensus 447 ~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P 487 (1289)
T 3avx_A 447 FPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEP 487 (1289)
T ss_dssp SCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCC
T ss_pred ccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCCC
Confidence 0 78999999 56889999888766543
No 349
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.44 E-value=2.4e-13 Score=153.01 Aligned_cols=144 Identities=18% Similarity=0.212 Sum_probs=104.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCc-CCCCCc-c--e--------Ee---cCc-------------cCCCc---
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPEL-VPSKAE-E--I--------TI---PPD-------------VTPEM--- 56 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~-~~~~~~-~--~--------~i---~~~-------------~~~~~--- 56 (608)
+..++|+|+|++|+|||||+|+|++..+.+. ..+.+. . . ++ ... +...+
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 4678999999999999999999999876543 222220 0 0 11 000 00000
Q ss_pred ---------------------------eeEEEEeCCCCCC---ChHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHH
Q psy3301 57 ---------------------------VPTHIVDYSEVDQ---TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPF 106 (608)
Q Consensus 57 ---------------------------~~~~i~Dt~G~~~---~~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~ 106 (608)
..+.||||||... .......+++.+|++|+|+|++++.+..... .|...
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~-~l~~~ 225 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERR-YLENY 225 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHH-HHHHH
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHH-HHHHH
Confidence 3689999999654 3455678899999999999999988877765 56555
Q ss_pred HhhhccCCCCcEEEEEeCcCCCCCC---------------------------------------C-cccCcc--------
Q psy3301 107 LRNCLVDTCLPIVLVGNKVDLVDYS---------------------------------------T-VESSAK-------- 138 (608)
Q Consensus 107 i~~~~~~~~~piilv~nK~Dl~~~~---------------------------------------~-~e~SAk-------- 138 (608)
+.. .+.|+++|+||+|+.... . ++|||+
T Consensus 226 l~~----~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~ 301 (695)
T 2j69_A 226 IKG----RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLK 301 (695)
T ss_dssp TTT----SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHH
T ss_pred HHh----hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhcc
Confidence 542 367899999999985321 1 779999
Q ss_pred ------cCcCHHHHHHHHHHHHhC
Q psy3301 139 ------TLKNISEMFYYAQKAVLH 156 (608)
Q Consensus 139 ------~~~~i~~lf~~l~~~i~~ 156 (608)
++.|+++++..+.+.+..
T Consensus 302 ~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 302 NPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp CTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred CchhhhhccCHHHHHHHHHHHHHH
Confidence 999999999999887753
No 350
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.44 E-value=5.9e-14 Score=142.60 Aligned_cols=101 Identities=14% Similarity=0.146 Sum_probs=80.6
Q ss_pred CceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEcC----------ChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeC
Q psy3301 55 EMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSVV----------DDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNK 124 (608)
Q Consensus 55 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~----------~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK 124 (608)
.++.+.+|||+|+++++..+..++++++++|+|||++ +..+++... .|...+.......++|++|++||
T Consensus 165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~-~~~~~i~~~~~~~~~~iiL~~NK 243 (327)
T 3ohm_A 165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESK-ALFRTIITYPWFQNSSVILFLNK 243 (327)
T ss_dssp TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHH-HHHHHHHTSGGGTTCEEEEEEEC
T ss_pred eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHH-HHHHHHhhhhccCCceEEEEEEC
Confidence 4578899999999999999999999999999999775 567788777 45555543234468999999999
Q ss_pred cCCCCCC------------------C-------------------------cccCcccCcCHHHHHHHHHHHHhC
Q psy3301 125 VDLVDYS------------------T-------------------------VESSAKTLKNISEMFYYAQKAVLH 156 (608)
Q Consensus 125 ~Dl~~~~------------------~-------------------------~e~SAk~~~~i~~lf~~l~~~i~~ 156 (608)
+|+.... . +++||+++.||.++|..+.+.++.
T Consensus 244 ~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~ 318 (327)
T 3ohm_A 244 KDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ 318 (327)
T ss_dssp HHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHH
Confidence 9985311 0 678888888898888888888764
No 351
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.44 E-value=5.9e-13 Score=138.76 Aligned_cols=136 Identities=19% Similarity=0.231 Sum_probs=93.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcc----e-------------Eec-----------------------
Q psy3301 10 NVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEE----I-------------TIP----------------------- 49 (608)
Q Consensus 10 ~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~----~-------------~i~----------------------- 49 (608)
--+|+|+|++|||||||+++|++..+.+......++ . ...
T Consensus 34 lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (360)
T 3t34_A 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR 113 (360)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence 349999999999999999999998874321111110 0 000
Q ss_pred --------------Cc-cCCCceeEEEEeCCCCCCC-------------hHHHHHHHHhcCcEEEEEEcCChhhHHHHHH
Q psy3301 50 --------------PD-VTPEMVPTHIVDYSEVDQT-------------VDELTEEIQKAHVICLVYSVVDDASIDRLSS 101 (608)
Q Consensus 50 --------------~~-~~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~ 101 (608)
.. ..+....+.||||||..++ ......+++.+|++|+|+|..+..... .
T Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~---~ 190 (360)
T 3t34_A 114 ETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT---S 190 (360)
T ss_dssp TSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG---C
T ss_pred hcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC---H
Confidence 00 0122346899999998876 566788999999999999876543322 1
Q ss_pred hHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-----------------cccCcccCcCHHHHHHH
Q psy3301 102 HWLPFLRNCLVDTCLPIVLVGNKVDLVDYST-----------------VESSAKTLKNISEMFYY 149 (608)
Q Consensus 102 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-----------------~e~SAk~~~~i~~lf~~ 149 (608)
.|+..++. ....+.|+++|+||+|+..... +++|++++.++++.+..
T Consensus 191 ~~~~l~~~-~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 191 DAIKISRE-VDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp HHHHHHHH-SCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred HHHHHHHH-hcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCH
Confidence 34555543 3345789999999999875432 77999998888776544
No 352
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport, ionic channel, membrane, PO potassium channel, potassium transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Probab=99.44 E-value=1.9e-13 Score=133.15 Aligned_cols=141 Identities=16% Similarity=0.203 Sum_probs=112.4
Q ss_pred ChHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHHH
Q psy3301 169 LTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFM 248 (608)
Q Consensus 169 l~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~~ 248 (608)
++++.++.+.+.|.. .|++|.|+.+|+..+++..++...+...++.+.+.++.+ ++|.|+|++|+.++..+.
T Consensus 61 ~s~~ei~~l~~~F~~--~d~~G~Is~~ef~~~l~~~~~~~~~~~~~~~lf~~~D~d------~~G~I~~~Ef~~~l~~~~ 132 (229)
T 3dd4_A 61 FTKKELQILYRGFKN--ECPSGVVNEETFKEIYSQFFPQGDSTTYAHFLFNAFDTD------HNGAVSFEDFIKGLSILL 132 (229)
T ss_dssp HHHHHHHHHHHHHHT--TCCSCCCCHHHHHHHHHHHSCSSSHHHHHHHHHHTTCSS------CCSSCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh--hCCCCCcCHHHHHHHHHHHCCCCCcHHHHHHHHHHcCCC------CCCeEeHHHHHHHHHHHc
Confidence 455566667777755 677899999999999988667777888888999999888 899999999998765443
Q ss_pred hcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccC---
Q psy3301 249 QRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLC--- 325 (608)
Q Consensus 249 ~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~--- 325 (608)
.. ...+.++.+|+.||+|+||+|+.+|+..++..+
T Consensus 133 ~~------------------------------------------~~~~~l~~~F~~~D~d~dG~Is~~E~~~~l~~~~~~ 170 (229)
T 3dd4_A 133 RG------------------------------------------TVQEKLNWAFNLYDINKDGYITKEEMLDIMKAIYDM 170 (229)
T ss_dssp HS------------------------------------------CHHHHHHHHHHHHCTTCSSCCBHHHHHHHHHHHHHH
T ss_pred CC------------------------------------------ChHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHHHH
Confidence 21 013678899999999999999999999999864
Q ss_pred ---------CCCCCCCCccccccceecCCCCccchhhHHhHhh
Q psy3301 326 ---------PPECPPWTDREMRAMVATNSKGWITMQGFLCYWI 359 (608)
Q Consensus 326 ---------~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~ 359 (608)
+..........+++.+|.|+||.|+|+||+..+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~Is~~EF~~~~~ 213 (229)
T 3dd4_A 171 MGKCTYPVLKEDAPRQHVETFFQKMDKNKDGVVTIDEFIESCQ 213 (229)
T ss_dssp CC-----------CCTHHHHHHHHHCSSCSSBCCHHHHHHHHH
T ss_pred hccccCCCcchhhHHHHHHHHHHHhcCCCCCcEeHHHHHHHHH
Confidence 2223335577888999999999999999999776
No 353
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.44 E-value=1e-13 Score=142.53 Aligned_cols=139 Identities=12% Similarity=0.032 Sum_probs=93.6
Q ss_pred CCCceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCC---CceEecceEeCCcceeEeeeeccccc------c
Q psy3301 405 TTRNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECD---PPYTINTTTVYGQEKYLVLKEILVRD------E 475 (608)
Q Consensus 405 ~~r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~---~~~~i~~~~v~Gqe~~~~l~~~~~~~------v 475 (608)
..+..+||+|+|++|||||||+++|+++.+...+ +|.+..... ..+.+.-++++|+++|..++..+++. |
T Consensus 161 ~~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV 239 (329)
T 3o47_A 161 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 239 (329)
T ss_dssp --CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEE
T ss_pred cccCcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 3456689999999999999999999999886544 344441111 22334445569999999988887776 7
Q ss_pred cccCCCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCC-------ceEEc--cCC
Q psy3301 476 QLPVLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSP-------AHSFS--AAN 537 (608)
Q Consensus 476 ~d~~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~-------~~~~S--~~~ 537 (608)
|| +++.+ ..+. .....+++|++|||||+||.+.. ..+++.+.++... ++++| ++.
T Consensus 240 ~D--~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~-----~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~ 312 (329)
T 3o47_A 240 VD--SNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSLRHRNWYIQATCATSGD 312 (329)
T ss_dssp EE--TTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-----CHHHHHHHHTCTTCCSSCEEEEECBTTTTB
T ss_pred EE--CCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc-----CHHHHHHHhchhhhhcCCCEEEEEECCCCc
Confidence 88 76654 2222 12223689999999999997533 3455666655432 67888 899
Q ss_pred CHHHHHHHHHHHHc
Q psy3301 538 NDREVFVKLATMAA 551 (608)
Q Consensus 538 ~v~e~F~~l~~~a~ 551 (608)
||+++|..|++.+.
T Consensus 313 gi~el~~~l~~~l~ 326 (329)
T 3o47_A 313 GLYEGLDWLSNQLR 326 (329)
T ss_dssp THHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999999874
No 354
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=99.43 E-value=1.3e-13 Score=128.96 Aligned_cols=143 Identities=14% Similarity=0.161 Sum_probs=110.5
Q ss_pred cChHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHH
Q psy3301 168 ELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLF 247 (608)
Q Consensus 168 ~l~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~ 247 (608)
.++++.+..+.+.|... |++|.|+..|+..+++......++..++..++..++.+ ++|.|++++|+.++...
T Consensus 14 ~~s~~~i~~l~~~fd~~--d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d------~~g~i~~~Ef~~~~~~~ 85 (183)
T 1s6c_A 14 NFTKRELQVLYRGFKNE--XPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTT------QTGSVKFEDFVTALSIL 85 (183)
T ss_dssp SCCHHHHHHHHHHHHHH--CTTSEECHHHHHHHHHHHSTTSCCHHHHHHHHHHHCTT------CSSCEEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh--CCCCcCCHHHHHHHHHHHcCCCChHHHHHHHHHHhCCC------CCCcEeHHHHHHHHHHH
Confidence 34556666666666554 68999999999999997444447899999999999998 89999999999876543
Q ss_pred HhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccC--
Q psy3301 248 MQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLC-- 325 (608)
Q Consensus 248 ~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~-- 325 (608)
... ...+.++.+|+.||.|++|+|+.+|+..++..+
T Consensus 86 ~~~------------------------------------------~~~~~~~~~f~~~D~d~~G~i~~~e~~~~~~~~~~ 123 (183)
T 1s6c_A 86 LRG------------------------------------------TVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYD 123 (183)
T ss_dssp HHC------------------------------------------CHHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHH
T ss_pred cCC------------------------------------------CHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHHHH
Confidence 211 013578899999999999999999999999775
Q ss_pred --CCCCCC--------CCccccccceecCCCCccchhhHHhHhhh
Q psy3301 326 --PPECPP--------WTDREMRAMVATNSKGWITMQGFLCYWIL 360 (608)
Q Consensus 326 --~~~~~~--------~~~~~~~~~~d~~~~g~i~~~ef~~~w~~ 360 (608)
|....| .+..++++.+|.|++|.|+|+||+..+.-
T Consensus 124 ~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~i~~~Ef~~~~~~ 168 (183)
T 1s6c_A 124 MMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESXQE 168 (183)
T ss_dssp HTC-----------CHHHHHHHHHHHCTTCSSEECHHHHHHHTTS
T ss_pred HhccccCcCccHHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHhc
Confidence 521111 23567888999999999999999987653
No 355
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis thaliana} PDB: 1v1g_A 1v1f_A
Probab=99.43 E-value=8.5e-14 Score=133.09 Aligned_cols=144 Identities=17% Similarity=0.137 Sum_probs=110.9
Q ss_pred cChHHHHHHHHHHHHhccCC--CCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHH
Q psy3301 168 ELTPECIKALTRIFKVCDLD--NDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHN 245 (608)
Q Consensus 168 ~l~~~~~~~L~~~f~~~D~d--~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~ 245 (608)
.++++....+.++|..+|.| ++|.|+.+|+..+++. .....+..++.++..++.+ ++|.|++++|+.++.
T Consensus 30 ~~s~~~~~~l~~~F~~~D~d~~~~G~i~~~e~~~~l~~--~~~~~~~~~~~~f~~~D~d------~~g~i~~~Ef~~~~~ 101 (207)
T 2ehb_A 30 PFTVEEVEALYELFKKLSSSIIDDGLIHKEEFQLALFR--NRNRRNLFADRIFDVFDVK------RNGVIEFGEFVRSLG 101 (207)
T ss_dssp SCCHHHHHHHHHHHHHHTTSSSCSSCEEHHHHHHHHHS--CTTCCCHHHHHHHHHHCTT------CSSEECHHHHHHHHG
T ss_pred CCCHHHHHHHHHHHHHhccccCCCCccCHHHHHHHHhc--cccccHHHHHHHHHHhcCC------CCCeEeHHHHHHHHH
Confidence 46678889999999999999 9999999999999875 3233345577899999888 899999999997653
Q ss_pred HHHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhc--
Q psy3301 246 LFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFS-- 323 (608)
Q Consensus 246 ~~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~-- 323 (608)
.... .....+.++.+|+.||.|++|+|+.+||+.++.
T Consensus 102 ~~~~-----------------------------------------~~~~~~~l~~~F~~~D~d~~G~I~~~E~~~~l~~~ 140 (207)
T 2ehb_A 102 VFHP-----------------------------------------SAPVHEKVKFAFKLYDLRQTGFIEREELKEMVVAL 140 (207)
T ss_dssp GGST-----------------------------------------TSCHHHHHHHHHHHHCTTCCSSEEHHHHHHHHHHH
T ss_pred HHcc-----------------------------------------CCCHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 2100 001246789999999999999999999999985
Q ss_pred --cCCCCCCCCCccc----cccceecCCCCccchhhHHhHhhh
Q psy3301 324 --LCPPECPPWTDRE----MRAMVATNSKGWITMQGFLCYWIL 360 (608)
Q Consensus 324 --~~~~~~~~~~~~~----~~~~~d~~~~g~i~~~ef~~~w~~ 360 (608)
..|....+.+..+ +++.+|.|++|.|+|+||+....-
T Consensus 141 ~~~~g~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~~ 183 (207)
T 2ehb_A 141 LHESELVLSEDMIEVMVDKAFVQADRKNDGKIDIDEWKDFVSL 183 (207)
T ss_dssp HHHHTCCCCHHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHH
T ss_pred HHHcccccCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHh
Confidence 3342233333333 345889999999999999987654
No 356
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.43 E-value=6.8e-14 Score=131.93 Aligned_cols=140 Identities=12% Similarity=0.067 Sum_probs=94.9
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCce-----EecceEeCC----------cceeEeeeecc
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPY-----TINTTTVYG----------QEKYLVLKEIL 471 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~-----~i~~~~v~G----------qe~~~~l~~~~ 471 (608)
...+||+|+|++|||||||+++|+++.+.. +.++++.+ ....+ .+.-++.+| ++.|..+.+.+
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAF-VSKTPGKT-RSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDY 98 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSC-CCSSCCCC-CCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCcccc-ccCCCCCc-cCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHHH
Confidence 456899999999999999999999988543 33344431 11111 122244578 67777666655
Q ss_pred ccc---------ccccCCCCcc----cccccccCCCCCcEEEEEeCCCCCc--chhcccccHHHHHHHcCCCCceEEc--
Q psy3301 472 VRD---------EQLPVLLPVD----VDCDKYFSTSKIPVMLVAGKSDMPR--ARQDYLMQPDIFCETHKLSPAHSFS-- 534 (608)
Q Consensus 472 ~~~---------v~d~~l~~~~----~~~~~~~~~~~~p~ilVgnK~DL~~--~~~~~~~~~~~~~~~~~~~~~~~~S-- 534 (608)
++. ++| .+... ..+.++....++|+++|+||+|+.+ .+++..++..+++..++..+++++|
T Consensus 99 ~~~~~~~~~vi~v~d--~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 176 (195)
T 3pqc_A 99 FKNRWSLQMVFLLVD--GRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSV 176 (195)
T ss_dssp HHHCTTEEEEEEEEE--TTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTT
T ss_pred HhcCcCceEEEEEec--CCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecC
Confidence 543 344 33221 1111344445899999999999964 3445556778888886655689999
Q ss_pred cCCCHHHHHHHHHHHH
Q psy3301 535 AANNDREVFVKLATMA 550 (608)
Q Consensus 535 ~~~~v~e~F~~l~~~a 550 (608)
++.|++++|..|++.+
T Consensus 177 ~~~gv~~l~~~l~~~l 192 (195)
T 3pqc_A 177 TGEGISELLDLISTLL 192 (195)
T ss_dssp TCTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 8999999999999876
No 357
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.42 E-value=6.6e-13 Score=149.30 Aligned_cols=118 Identities=16% Similarity=0.131 Sum_probs=84.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCC--CCC--cCCC---C--------CcceEec---CccCCCceeEEEEeCCCCC
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEE--FPE--LVPS---K--------AEEITIP---PDVTPEMVPTHIVDYSEVD 68 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~--~~~--~~~~---~--------~~~~~i~---~~~~~~~~~~~i~Dt~G~~ 68 (608)
..+..+|+|+|++|+|||||+++|+... +.. .+.. . ....++. ..+...++.++||||||+.
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 88 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHV 88 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSST
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCcc
Confidence 3456899999999999999999998421 100 0000 0 0011111 1223456889999999999
Q ss_pred CChHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCC
Q psy3301 69 QTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDY 130 (608)
Q Consensus 69 ~~~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 130 (608)
+|...+...++.+|++|+|+|+++..+++... .|..... .++|+++|+||+|+...
T Consensus 89 df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~-~~~~~~~-----~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 89 DFTIEVERSMRVLDGAIVVFDSSQGVEPQSET-VWRQAEK-----YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp TCHHHHHHHHHHCSEEEEEEETTTCSCHHHHH-HHHHHHH-----TTCCEEEEEECTTSTTC
T ss_pred chHHHHHHHHHHCCEEEEEEECCCCcchhhHH-HHHHHHH-----cCCCEEEEEECCCcccC
Confidence 99999999999999999999999988877765 5654332 37899999999998754
No 358
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.42 E-value=4.4e-14 Score=128.87 Aligned_cols=135 Identities=15% Similarity=0.070 Sum_probs=82.6
Q ss_pred eEEEEEEccCCCchHHHHHHHhcCCCCCCC-CCCCCCCcCCCceE-----ecceEeCCcceeE-------eeeeccccc-
Q psy3301 409 VYVCHVIGNRSTGKTALCQSILRKHHDSSK-TSITSPVECDPPYT-----INTTTVYGQEKYL-------VLKEILVRD- 474 (608)
Q Consensus 409 ~~k~~viG~~gvGKTsll~~f~~~~~~~~~-~~t~~~~~~~~~~~-----i~~~~v~Gqe~~~-------~l~~~~~~~- 474 (608)
++||+|+|++|||||||+++++++.+.... .++.+.+.+...+. +.-++.+|++.+. ..+..+++.
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 80 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDA 80 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhC
Confidence 479999999999999999999998754221 11221111112222 2233447777632 111222222
Q ss_pred -----ccccCCCCcccc----cccccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHH
Q psy3301 475 -----EQLPVLLPVDVD----CDKYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVF 543 (608)
Q Consensus 475 -----v~d~~l~~~~~~----~~~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F 543 (608)
+|| .++.... ..++....++|+++|+||+|+.+.+ ++..+++ ++++.+++++| ++.|++++|
T Consensus 81 ~~~i~v~d--~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~ 153 (161)
T 2dyk_A 81 EVVLFAVD--GRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLEELL 153 (161)
T ss_dssp SEEEEEEE--SSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHHHHH
T ss_pred CEEEEEEE--CCCcccHhHHHHHHHHHhcCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChHHHH
Confidence 566 5543211 1123333679999999999997642 3455666 77886699999 899999999
Q ss_pred HHHHHHH
Q psy3301 544 VKLATMA 550 (608)
Q Consensus 544 ~~l~~~a 550 (608)
..|++.+
T Consensus 154 ~~l~~~l 160 (161)
T 2dyk_A 154 EAIWERL 160 (161)
T ss_dssp HHHHHHC
T ss_pred HHHHHhC
Confidence 9998753
No 359
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR {Homo sapiens} PDB: 2l4i_A 2lm5_A
Probab=99.42 E-value=4.4e-14 Score=136.13 Aligned_cols=140 Identities=18% Similarity=0.143 Sum_probs=109.0
Q ss_pred cChHHHHHHHHHHHHhccC-----CC-C--CccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCC-cchh
Q psy3301 168 ELTPECIKALTRIFKVCDL-----DN-D--NLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNC-ITLN 238 (608)
Q Consensus 168 ~l~~~~~~~L~~~f~~~D~-----d~-d--g~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~-i~~~ 238 (608)
.+++..++.+.+.|..+|. |+ + |.|+.+|+.. ++. +|..++. +++++.++.+ ++|. |+|+
T Consensus 44 ~~s~~ei~~l~~~F~~~D~~~~~~d~~~~dG~I~~~E~~~-l~~-lg~~~~~---~~lf~~~D~d------~dG~~I~f~ 112 (214)
T 2l4h_A 44 FLTKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILS-LPE-LKANPFK---ERICRVFSTS------PAKDSLSFE 112 (214)
T ss_dssp SCCHHHHHHHHHHHHHHSCGGGCCHHHHTTSEECHHHHTT-CHH-HHTSTTH---HHHHHHHCCS------SSCCSEEHH
T ss_pred CCCHHHHHHHHHHHHHhCcccccccccccCCcCCHHHHHH-hhc-cCCChHH---HHHHHHhCcC------CCCCEecHH
Confidence 5677888899999999998 55 6 9999999999 654 6766654 4567777777 7899 9999
Q ss_pred hHHHHHHHHHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHH
Q psy3301 239 GFLFLHNLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQ 318 (608)
Q Consensus 239 ~F~~l~~~~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El 318 (608)
+|+.++..+... ....+.++.+|+.||.|++|+|+.+||
T Consensus 113 EF~~~~~~~~~~-----------------------------------------~~~~~~l~~~F~~~D~d~dG~Is~~El 151 (214)
T 2l4h_A 113 DFLDLLSVFSDT-----------------------------------------ATPDIKSHYAFRIFDFDDDGTLNREDL 151 (214)
T ss_dssp HHHHHHHHTSSC-----------------------------------------SCHHHHHHHHHHHHCTTCSSCBCHHHH
T ss_pred HHHHHHHHHcCC-----------------------------------------CCHHHHHHHHHHHhCCCCCCcCCHHHH
Confidence 999776532110 011367899999999999999999999
Q ss_pred HHhhccCCC-----CCCCCCcc----ccccceecCCCCccchhhHHhHhh
Q psy3301 319 ARLFSLCPP-----ECPPWTDR----EMRAMVATNSKGWITMQGFLCYWI 359 (608)
Q Consensus 319 ~~~~~~~~~-----~~~~~~~~----~~~~~~d~~~~g~i~~~ef~~~w~ 359 (608)
+.++..++. ...+.+.. .++..+|.|+||.|+|+||+..+.
T Consensus 152 ~~~l~~~~~~~~~~~~s~~e~~~~~~~~~~~~D~d~dG~Is~~EF~~~~~ 201 (214)
T 2l4h_A 152 SRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQHVIS 201 (214)
T ss_dssp HHHHHHHHHSSSCTTCSCTHHHHHHHHHHHHHCCSCCSSBCSHHHHHHHH
T ss_pred HHHHHHHhccccCCCCCHHHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHH
Confidence 999987752 23333333 388899999999999999998765
No 360
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.42 E-value=7.8e-14 Score=149.73 Aligned_cols=117 Identities=11% Similarity=0.118 Sum_probs=79.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcC--CCCCc-----------------------------CCCCCcceEecCccCCCc
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSE--EFPEL-----------------------------VPSKAEEITIPPDVTPEM 56 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~--~~~~~-----------------------------~~~~~~~~~i~~~~~~~~ 56 (608)
+..++|+++|++++|||||+++|++. .+... .....+.......+...+
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 45789999999999999999999874 22110 000001111111234556
Q ss_pred eeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEcCChh---hHH---HHHHhHHHHHhhhccCCCCc-EEEEEeCcCCCC
Q psy3301 57 VPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSVVDDA---SID---RLSSHWLPFLRNCLVDTCLP-IVLVGNKVDLVD 129 (608)
Q Consensus 57 ~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~~~~---s~~---~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~ 129 (608)
..+.||||||+++|...+...+..+|++|+|+|+++.. +|+ .....| ..+.. .++| +|+|+||+|+..
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~-~~~~~----~~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHA-LLAFT----LGVRQLIVAVNKMDSVK 159 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHH-HHHHH----TTCCEEEEEEECGGGGT
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHH-HHHHH----cCCCeEEEEEEcccccc
Confidence 78999999999999988888999999999999999763 231 222122 22331 3565 999999999973
No 361
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.42 E-value=2.5e-13 Score=138.49 Aligned_cols=100 Identities=12% Similarity=0.051 Sum_probs=74.3
Q ss_pred CCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEcC----------ChhhHHHHHHhHHHHHhhhccCCCCcEEEEEe
Q psy3301 54 PEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSVV----------DDASIDRLSSHWLPFLRNCLVDTCLPIVLVGN 123 (608)
Q Consensus 54 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~----------~~~s~~~~~~~~~~~i~~~~~~~~~piilv~n 123 (608)
..++.+.+|||+|+++++..+..++++++++|+|||++ +..+++... .|...+.......++|++|++|
T Consensus 158 ~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~-~~~~~i~~~~~~~~~piiLv~N 236 (340)
T 4fid_A 158 VKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESI-AVFKDIMTNEFLKGAVKLIFLN 236 (340)
T ss_dssp SSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHH-HHHHHHHHCGGGTTSEEEEEEE
T ss_pred eeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHH-HHHHHHhhhhccCCCeEEEEEE
Confidence 34678999999999999999999999999999999999 778888887 4544444323456899999999
Q ss_pred CcCCCCCCC-------cccCcccCcCHHHHHHHHHHHH
Q psy3301 124 KVDLVDYST-------VESSAKTLKNISEMFYYAQKAV 154 (608)
Q Consensus 124 K~Dl~~~~~-------~e~SAk~~~~i~~lf~~l~~~i 154 (608)
|+|+..... +..+-..+.++++++.++.+..
T Consensus 237 K~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f 274 (340)
T 4fid_A 237 KMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLF 274 (340)
T ss_dssp CHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHH
T ss_pred CchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhc
Confidence 999864321 1111112246777777777766
No 362
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR {Rattus norvegicus} PDB: 2g9b_A
Probab=99.41 E-value=2.8e-14 Score=141.50 Aligned_cols=153 Identities=12% Similarity=0.104 Sum_probs=115.1
Q ss_pred cChHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCCh------hhHHHHHHHHHHhcCCCccCCCCcchhhHH
Q psy3301 168 ELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSR------DSLEDVKIVIRKNINDGVSANNCITLNGFL 241 (608)
Q Consensus 168 ~l~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~------~el~~i~~~~~~~~~~~~~~~~~i~~~~F~ 241 (608)
.+++...+.|+++|..+|.|++|.|+..|+..+++. +|..++. .+++.++..++.+ ++|.|+|++|+
T Consensus 9 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~-l~~~~~~~~~~~~~~~~~l~~~~D~~------~~g~i~~~Ef~ 81 (263)
T 2f33_A 9 QSSLITASQFFEIWLHFDADGSGYLEGKELQNLIQE-LLQARKKAGLELSPEMKTFVDQYGQR------DDGKIGIVELA 81 (263)
T ss_dssp TTSCCCHHHHHHHHHHHCTTCSSSBCSHHHHHHHHH-HHHHHHHHTCCCCHHHHHHHHHHTTG------GGCCBCHHHHH
T ss_pred hcCcccHHHHHHHHHHhCCCCCCCcCHHHHHHHHHH-HHhhcCCCccchHHHHHHHHHHhCCC------CCCcCcHHHHH
Confidence 455566778999999999999999999999999886 5555443 7788999999888 89999999999
Q ss_pred HHHHHHHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHh
Q psy3301 242 FLHNLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARL 321 (608)
Q Consensus 242 ~l~~~~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~ 321 (608)
.++... ......|.. .. ....+.++.+|+.||+|++|+|+.+||+.+
T Consensus 82 ~~~~~~---~~~~~~~~~----------------------------~~--~~~~~~l~~~F~~~D~d~~G~i~~~el~~~ 128 (263)
T 2f33_A 82 HVLPTE---ENFLLLFRC----------------------------QQ--LKSCEEFMKTWRKYDTDHSGFIETEELKNF 128 (263)
T ss_dssp HHTTSC---TTHHHHHGG----------------------------GT--SSCHHHHHHHHTTSSTTTCSSBCHHHHHHH
T ss_pred HHHhhh---hhHHHHHHH----------------------------hh--ccHHHHHHHHHHHHCCCCCCCcCHHHHHHH
Confidence 764210 000000100 00 011456899999999999999999999999
Q ss_pred hccC----CCCCCCCCccc----cccceecCCCCccchhhHHhHhhh
Q psy3301 322 FSLC----PPECPPWTDRE----MRAMVATNSKGWITMQGFLCYWIL 360 (608)
Q Consensus 322 ~~~~----~~~~~~~~~~~----~~~~~d~~~~g~i~~~ef~~~w~~ 360 (608)
+..+ |....+.+... ++..+|.|++|.|+|+||+..|..
T Consensus 129 l~~~~~~~g~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~ef~~~~~~ 175 (263)
T 2f33_A 129 LKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGKLELTEMARLLPV 175 (263)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHHHHHTCSSSSSCBCHHHHHHHSCT
T ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCCCCeEcHHHHHHHHHH
Confidence 9876 52233332333 888999999999999999998875
No 363
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.41 E-value=3.5e-12 Score=143.56 Aligned_cols=118 Identities=18% Similarity=0.138 Sum_probs=83.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCC--CCC--cCCCC-----------CcceEecC---ccCC-------CceeEEE
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEE--FPE--LVPSK-----------AEEITIPP---DVTP-------EMVPTHI 61 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~--~~~--~~~~~-----------~~~~~i~~---~~~~-------~~~~~~i 61 (608)
..+..+|+|+|+.|+|||||+++|+... +.. .+... ....++.. .+.. ..+.++|
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 4557899999999999999999998532 111 00000 00112211 1222 2388999
Q ss_pred EeCCCCCCChHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCC
Q psy3301 62 VDYSEVDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDY 130 (608)
Q Consensus 62 ~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 130 (608)
|||||+.+|...+...++.+|++|+|+|+++..+.+... .|.. +. ..++|+++|+||+|+...
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~-~~~~-~~----~~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSET-VWRQ-AN----KYKVPRIAFVNKMDRMGA 149 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHH-HHHH-HH----HcCCCEEEEEeCCCcccc
Confidence 999999999999999999999999999999887666554 4543 22 247899999999997643
No 364
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.41 E-value=2e-14 Score=158.61 Aligned_cols=129 Identities=18% Similarity=0.155 Sum_probs=74.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCC-------------------------------cCCCCCcceEecCccCCC
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPE-------------------------------LVPSKAEEITIPPDVTPE 55 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~-------------------------------~~~~~~~~~~i~~~~~~~ 55 (608)
.+..++|+++|++++|||||+++|+...... ...+..+.......+...
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 3456899999999999999999997431100 001111222222233445
Q ss_pred ceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEcCCh----------hhHHHHHHhHHHHHhhhccCCCCc-EEEEEeC
Q psy3301 56 MVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSVVDD----------ASIDRLSSHWLPFLRNCLVDTCLP-IVLVGNK 124 (608)
Q Consensus 56 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~~~----------~s~~~~~~~~~~~i~~~~~~~~~p-iilv~nK 124 (608)
+..+.||||||+++|...+...++.+|++|+|+|+++. ++.+.+. .+. ..++| +|+|+||
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~-----~~~----~lgip~iIvviNK 324 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAY-----LLR----ALGISEIVVSVNK 324 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHH-----HHH----HSSCCCEEEEEEC
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHH-----HHH----HcCCCeEEEEEec
Confidence 67899999999999988888888999999999999853 3333322 222 12555 9999999
Q ss_pred cCCCCCC---------------------------CcccCcccCcCHH
Q psy3301 125 VDLVDYS---------------------------TVESSAKTLKNIS 144 (608)
Q Consensus 125 ~Dl~~~~---------------------------~~e~SAk~~~~i~ 144 (608)
+|+.... .+++||++|.||.
T Consensus 325 iDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 325 LDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred cccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 9997521 0789999999997
No 365
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.40 E-value=9.2e-13 Score=136.84 Aligned_cols=140 Identities=18% Similarity=0.190 Sum_probs=89.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCC----Cc------------------------ce-----------Eec
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSK----AE------------------------EI-----------TIP 49 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~----~~------------------------~~-----------~i~ 49 (608)
...+|+|+|++|||||||+++|++..+.+..... .. .. .+.
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 3579999999999999999999998875321111 00 00 000
Q ss_pred ---Ccc----------CCCceeEEEEeCCCCCC-------------ChHHHHHHHHhcCcEEE-EEEcCChhhHHHHHHh
Q psy3301 50 ---PDV----------TPEMVPTHIVDYSEVDQ-------------TVDELTEEIQKAHVICL-VYSVVDDASIDRLSSH 102 (608)
Q Consensus 50 ---~~~----------~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~ad~iil-V~d~~~~~s~~~~~~~ 102 (608)
..+ ......+.||||||..+ +......+++.++.+++ |.|++....-.... .
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~-~ 188 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL-K 188 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHH-H
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHH-H
Confidence 000 11246799999999643 23445667777665555 55554322111111 2
Q ss_pred HHHHHhhhccCCCCcEEEEEeCcCCCCCCC--------------------cccCcccCcCHHHHHHHHHHH
Q psy3301 103 WLPFLRNCLVDTCLPIVLVGNKVDLVDYST--------------------VESSAKTLKNISEMFYYAQKA 153 (608)
Q Consensus 103 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------------------~e~SAk~~~~i~~lf~~l~~~ 153 (608)
+...+ ...+.|+++|+||+|+..... +++||+++.|+++++..+.+.
T Consensus 189 i~~~~----~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~e 255 (353)
T 2x2e_A 189 VAKEV----DPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 255 (353)
T ss_dssp HHHHH----CTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHHH
T ss_pred HHHHh----CcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHHH
Confidence 33333 345789999999999864321 779999999999999998773
No 366
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein, EF-finger, transport protein; 2.30A {Homo sapiens} SCOP: a.39.1.5
Probab=99.40 E-value=3.2e-13 Score=131.04 Aligned_cols=142 Identities=14% Similarity=0.155 Sum_probs=110.2
Q ss_pred ChHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHHH
Q psy3301 169 LTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFM 248 (608)
Q Consensus 169 l~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~~ 248 (608)
++++.++.+.+.|... |++|.|+.+|+..+++.......+..+++.+++.++.+ ++|.|++++|+.++....
T Consensus 48 ~s~~ei~~l~~~Fd~~--d~~G~I~~~E~~~~l~~l~~~~~~~~~~~~~f~~~D~d------~~G~I~~~Ef~~~l~~~~ 119 (224)
T 1s1e_A 48 FTKRELQVLYRGFKNE--CPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTT------QTGSVKFEDFVTALSILL 119 (224)
T ss_dssp CCHHHHHHHHHHHHHH--CTTSCBCHHHHHHHHHTTCTTSCCHHHHHHHHHHHCTT------CSSCBCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhh--CCCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHhcCC------CCCcEeHHHHHHHHHHHc
Confidence 4555555555555443 48999999999999997444457899999999999998 899999999998765432
Q ss_pred hcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccC---
Q psy3301 249 QRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLC--- 325 (608)
Q Consensus 249 ~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~--- 325 (608)
.. ...+.++.+|+.||.|+||+|+.+|+..++...
T Consensus 120 ~~------------------------------------------~~~~~l~~~F~~~D~d~dG~Is~~E~~~~l~~~~~~ 157 (224)
T 1s1e_A 120 RG------------------------------------------TVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDM 157 (224)
T ss_dssp HC------------------------------------------CHHHHHHHHHHHHCTTCCSEECHHHHHHHHHHHHHH
T ss_pred cC------------------------------------------CHHHHHHHHHHHHcCCCCCeECHHHHHHHHHHHHHH
Confidence 11 014678899999999999999999999999765
Q ss_pred -CCCCCC--------CCccccccceecCCCCccchhhHHhHhhh
Q psy3301 326 -PPECPP--------WTDREMRAMVATNSKGWITMQGFLCYWIL 360 (608)
Q Consensus 326 -~~~~~~--------~~~~~~~~~~d~~~~g~i~~~ef~~~w~~ 360 (608)
|....| .+..++++.+|.|+||.|+|+||+..+.-
T Consensus 158 ~g~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~Is~~EF~~~~~~ 201 (224)
T 1s1e_A 158 MGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESCQE 201 (224)
T ss_dssp HTTCCCGGGCSSSHHHHHHHHHHHHCTTCSSCEEHHHHHHHHHT
T ss_pred hcccCCCCCCHhHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHh
Confidence 421111 22567888999999999999999988764
No 367
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.39 E-value=7.5e-14 Score=131.92 Aligned_cols=141 Identities=16% Similarity=0.179 Sum_probs=84.8
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceE----ecceEeCC----------cceeEeeeeccc
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYT----INTTTVYG----------QEKYLVLKEILV 472 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~----i~~~~v~G----------qe~~~~l~~~~~ 472 (608)
...++|+|+|++|||||||+++++++.+...+.++++.+.....+. +.-++.+| +++|..+...++
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 100 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYI 100 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECCcEEEEECCCCCccccCHHHHHHHHHHHHHHH
Confidence 4579999999999999999999999987666655555411111111 22345588 777776665554
Q ss_pred cc---------ccccCCCCcc--cc--cccccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcC---CCCceEEc--
Q psy3301 473 RD---------EQLPVLLPVD--VD--CDKYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHK---LSPAHSFS-- 534 (608)
Q Consensus 473 ~~---------v~d~~l~~~~--~~--~~~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~---~~~~~~~S-- 534 (608)
+. ++| +++.. .. ..++....++|+++|+||+|+...+++.. ..+++.+.+. ..+++++|
T Consensus 101 ~~~~~~~~~i~v~d--~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~ 177 (195)
T 1svi_A 101 TTREELKAVVQIVD--LRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDK-HAKVVRQTLNIDPEDELILFSSE 177 (195)
T ss_dssp HHCTTEEEEEEEEE--TTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHH-HHHHHHHHHTCCTTSEEEECCTT
T ss_pred hhhhcCCEEEEEEE--CCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHHHH-HHHHHHHHHcccCCCceEEEEcc
Confidence 32 566 55433 11 11344447899999999999987554421 2233333232 22378888
Q ss_pred cCCCHHHHHHHHHHHH
Q psy3301 535 AANNDREVFVKLATMA 550 (608)
Q Consensus 535 ~~~~v~e~F~~l~~~a 550 (608)
++.|++++|..|++.+
T Consensus 178 ~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 178 TKKGKDEAWGAIKKMI 193 (195)
T ss_dssp TCTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 8999999999998865
No 368
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.38 E-value=3.7e-13 Score=146.45 Aligned_cols=137 Identities=12% Similarity=0.109 Sum_probs=93.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCCCCc----CC------C-CC--------cceEec---CccCCCceeEEEEeCC
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPEL----VP------S-KA--------EEITIP---PDVTPEMVPTHIVDYS 65 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~----~~------~-~~--------~~~~i~---~~~~~~~~~~~i~Dt~ 65 (608)
.+.++|+|+|++|+|||||+++|+....... +. . .. ...++. ..+...++.++|||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 4578999999999999999999996421110 00 0 00 001111 1234457889999999
Q ss_pred CCCCChHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-------------
Q psy3301 66 EVDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST------------- 132 (608)
Q Consensus 66 G~~~~~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~------------- 132 (608)
|+++|......+++.+|++|+|+|+++....... .+...+. ..++|+++|+||+|+.....
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~--~~~~~~~----~~~ipiivviNK~Dl~~~~~~~~~~~i~~~l~~ 164 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTR--KLMEVTR----LRDTPILTFMNKLDRDIRDPMELLDEVENELKI 164 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHH--HHHHHHT----TTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCC
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHHHH--HHHHHHH----HcCCCEEEEEcCcCCccccHHHHHHHHHHHhCC
Confidence 9999999899999999999999999987543322 2333332 35789999999999875432
Q ss_pred -------cccCcccCcCHHHHHHHH
Q psy3301 133 -------VESSAKTLKNISEMFYYA 150 (608)
Q Consensus 133 -------~e~SAk~~~~i~~lf~~l 150 (608)
..+|++++.|+.+++...
T Consensus 165 ~~~~~~~pi~sa~~~~Gv~dl~~~~ 189 (529)
T 2h5e_A 165 GCAPITWPIGCGKLFKGVYHLYKDE 189 (529)
T ss_dssp EEEESEEEESCGGGCCEEEETTTTE
T ss_pred CccceecceecccCcceeeehhhhh
Confidence 125777777777766543
No 369
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.38 E-value=1.3e-13 Score=151.45 Aligned_cols=145 Identities=14% Similarity=0.099 Sum_probs=98.6
Q ss_pred CCceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCC---------------CceEecceEeCCcceeEeeeec
Q psy3301 406 TRNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECD---------------PPYTINTTTVYGQEKYLVLKEI 470 (608)
Q Consensus 406 ~r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~---------------~~~~i~~~~v~Gqe~~~~l~~~ 470 (608)
..+.+||+++|.+|||||||++++++..|...+.+|++.+.+. ..+.+.-.+++|++.|..++..
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 4567999999999999999999999999987777777662221 1234455566999999888877
Q ss_pred cccc------ccccCCCCcccccc-----cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCC
Q psy3301 471 LVRD------EQLPVLLPVDVDCD-----KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AAN 537 (608)
Q Consensus 471 ~~~~------v~d~~l~~~~~~~~-----~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~ 537 (608)
+++. ||| +++.+.... ..+ .++.|+|+||||+|+.+.+++..++..+++..++++ ++++| ++.
T Consensus 118 ~l~~~d~ii~V~D--~s~~~~~~~~~~~l~~~-~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~vSA~~g~ 193 (535)
T 3dpu_A 118 FMTRSSVYMLLLD--SRTDSNKHYWLRHIEKY-GGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENR-FHRISCKNGD 193 (535)
T ss_dssp HHHSSEEEEEEEC--GGGGGGHHHHHHHHHHH-SSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTC-EEECCC----
T ss_pred HccCCcEEEEEEe--CCCchhHHHHHHHHHHh-CCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCc-eEEEecCccc
Confidence 7655 677 554331110 111 357999999999999887777777888899999886 89999 899
Q ss_pred CHHHHHHHHHHHHcCCC
Q psy3301 538 NDREVFVKLATMAAFPR 554 (608)
Q Consensus 538 ~v~e~F~~l~~~a~~p~ 554 (608)
|++++|..|++.+..+.
T Consensus 194 gi~eL~~~l~~~~~~~~ 210 (535)
T 3dpu_A 194 GVESIAKSLKSAVLHPD 210 (535)
T ss_dssp -CTTHHHHHHHHHTCTT
T ss_pred CHHHHHHHHHHHHhccc
Confidence 99999999999886654
No 370
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate cyclase activating protein, GCAP1, GCAP-1, calcium, lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Probab=99.38 E-value=1.5e-13 Score=130.51 Aligned_cols=138 Identities=15% Similarity=0.154 Sum_probs=109.1
Q ss_pred HHHHHHHHHHhccCC-CCCccCHHHHHHHhhcccCCCCCh-hhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHHHhc
Q psy3301 173 CIKALTRIFKVCDLD-NDNLLSDKELNAFQRRCFDAPLSR-DSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQR 250 (608)
Q Consensus 173 ~~~~L~~~f~~~D~d-~dg~l~~~El~~~~~~~~g~~~~~-~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~~~~ 250 (608)
..+.++++|..+|.+ ++|.|+..|+..+++. +|..++. +++..++..++.+ ++|.|++++|+.++.....
T Consensus 12 ~~~el~~~f~~fd~~~~~G~i~~~e~~~~l~~-~~~~~~~~~~~~~~f~~~D~d------~~G~I~~~Ef~~~~~~~~~- 83 (198)
T 2r2i_A 12 SATECHQWYKKFMTECPSGQLTLYEFKQFFGL-KNLSPSANKYVEQMFETFDFN------KDGYIDFMEYVAALSLVLK- 83 (198)
T ss_dssp HTSCHHHHHHHHHHHCTTSEECHHHHHHHHTC-CSCCHHHHHHHHHHHHHHCTT------CSSCEEHHHHHHHHHHHSS-
T ss_pred CHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHH-hCCCcchHHHHHHHHHHHCCC------CCCeEcHHHHHHHHHHHcc-
Confidence 344578899999998 8999999999999987 5665543 5589999999888 8999999999977653210
Q ss_pred CCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCCC---
Q psy3301 251 GRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPP--- 327 (608)
Q Consensus 251 ~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~~--- 327 (608)
. ...+.++.+|+.||.|++|+|+.+|+..++...+.
T Consensus 84 --~---------------------------------------~~~~~~~~~F~~~D~d~~G~I~~~Ef~~~~~~~~~~~~ 122 (198)
T 2r2i_A 84 --G---------------------------------------KVDQKLRWYFKLYDVDGNGCIDRGELLNIIKAIRAINR 122 (198)
T ss_dssp --C---------------------------------------CHHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHTTGGGG
T ss_pred --C---------------------------------------chHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhhcC
Confidence 0 01456889999999999999999999999987741
Q ss_pred ---CCCCCC-ccccccceecCCCCccchhhHHhHhh
Q psy3301 328 ---ECPPWT-DREMRAMVATNSKGWITMQGFLCYWI 359 (608)
Q Consensus 328 ---~~~~~~-~~~~~~~~d~~~~g~i~~~ef~~~w~ 359 (608)
...+.+ ...+++.+|.|++|.|+|+||+..+.
T Consensus 123 ~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~ 158 (198)
T 2r2i_A 123 CNEAMTAEEFTNMVFDKIDINGDGELSLEEFMEGVQ 158 (198)
T ss_dssp SSSCCCHHHHHHHHHHHHCTTCSSEECHHHHHHHHT
T ss_pred CCchhhHHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 111111 46678889999999999999999875
No 371
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence, southeast collabora structural genomics, secsg, structural genomics, PSI; HET: CTZ; 1.72A {Renilla muelleri} PDB: 2hq8_A
Probab=99.38 E-value=2.8e-14 Score=133.79 Aligned_cols=144 Identities=14% Similarity=0.120 Sum_probs=111.2
Q ss_pred cChHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcc-----cCCCCChhhHHHHH---------HHHHHhcCCCccCCC
Q psy3301 168 ELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRC-----FDAPLSRDSLEDVK---------IVIRKNINDGVSANN 233 (608)
Q Consensus 168 ~l~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~-----~g~~~~~~el~~i~---------~~~~~~~~~~~~~~~ 233 (608)
.++++..+.++++|..+|.|++|.|+.+|+..+++.. +|..++.+++..++ ..++.+ ++|
T Consensus 7 ~l~~~~~~~l~~~F~~~D~d~dG~i~~~El~~~l~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~f~~~D~d------~dg 80 (186)
T 2hps_A 7 SERAYHLRKMKTRMQRVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVADQLGLAPGVRIS------VEE 80 (186)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCSSEEEHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTCCTTCEEE------HHH
T ss_pred cccHHHHHHHHHHhhhcCCCCCCccCHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhcCCC------CCC
Confidence 4567888999999999999999999999999998752 48888888888886 455544 678
Q ss_pred CcchhhHHHHHHHHHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHH--hhhcCCCCC
Q psy3301 234 CITLNGFLFLHNLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLF--YRFDKDGDG 311 (608)
Q Consensus 234 ~i~~~~F~~l~~~~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F--~~fD~d~dG 311 (608)
.|++++ .++.. .... ....+.+..+| ..||+|++|
T Consensus 81 ~I~~~E--~~~~~---~~~~--------------------------------------~~~~~~~~~~f~~~~fD~d~~G 117 (186)
T 2hps_A 81 AAVNAT--DSLLK---MKGE--------------------------------------EKAMAVIQSLIMYDCIDTDKDG 117 (186)
T ss_dssp HHHHHH--HHHHH---CCTH--------------------------------------HHHHTTHHHHHHHHHHCTTCSS
T ss_pred cccHHH--HHHHH---hcCC--------------------------------------hHHHHHHHHHHHHHHccCCCCC
Confidence 999999 33221 1000 01123344555 778999999
Q ss_pred CCCHHHHHHhhccCCCCCCCCCccccccceecCCCCccchhhHHhHhhh
Q psy3301 312 ALSPEEQARLFSLCPPECPPWTDREMRAMVATNSKGWITMQGFLCYWIL 360 (608)
Q Consensus 312 ~ls~~El~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~ 360 (608)
+|+.+|++.++...|....+.+...+++.+|.|++|.|+|+||+..+.-
T Consensus 118 ~I~~~E~~~~l~~~g~~~~~~~~~~~~~~~D~d~dG~i~~~ef~~~~~~ 166 (186)
T 2hps_A 118 YVSLPEFKAFLQAVGPDLTDDKAITCFNTLDFNKNGQISRDEFLVTVND 166 (186)
T ss_dssp EEEHHHHHHHHHHHCTTCCHHHHHHHHHHHCTTCSSEEEHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhCCCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHH
Confidence 9999999999998874444455788899999999999999999988754
No 372
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.37 E-value=2e-13 Score=139.01 Aligned_cols=141 Identities=11% Similarity=0.069 Sum_probs=100.0
Q ss_pred ceEEEEEEccCCCchHHHHHHHhcCC--CCC-CCCCCCCCCcC----CCceEecceEeCCccee-----Eeeeeccccc-
Q psy3301 408 NVYVCHVIGNRSTGKTALCQSILRKH--HDS-SKTSITSPVEC----DPPYTINTTTVYGQEKY-----LVLKEILVRD- 474 (608)
Q Consensus 408 ~~~k~~viG~~gvGKTsll~~f~~~~--~~~-~~~~t~~~~~~----~~~~~i~~~~v~Gqe~~-----~~l~~~~~~~- 474 (608)
..+||+++|++|||||||+++|+++. +.. .+.+|.+.... ...+.+.-++++|+++| ..+++.++++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~a 81 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMV 81 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccC
Confidence 35899999999999999999999873 322 23344444111 11234445566999988 5666666555
Q ss_pred -----ccccCCCCcc--cccccc--------cCCCCCcEEEEEeCCCCCc--chh----cccccHHHHHHHcCC--CCce
Q psy3301 475 -----EQLPVLLPVD--VDCDKY--------FSTSKIPVMLVAGKSDMPR--ARQ----DYLMQPDIFCETHKL--SPAH 531 (608)
Q Consensus 475 -----v~d~~l~~~~--~~~~~~--------~~~~~~p~ilVgnK~DL~~--~~~----~~~~~~~~~~~~~~~--~~~~ 531 (608)
||| +++.+ ..+..| ...+++|+++||||+||.+ .++ +..+++.++++++|+ .+++
T Consensus 82 d~vi~V~D--~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~ 159 (307)
T 3r7w_A 82 QVLIHVFD--VESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGF 159 (307)
T ss_dssp SEEEEEEE--TTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEE
T ss_pred CEEEEEEE--CCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEE
Confidence 788 77765 322211 1146899999999999987 565 667889999999985 3478
Q ss_pred EEc-cCCCHHHHHHHHHHHH
Q psy3301 532 SFS-AANNDREVFVKLATMA 550 (608)
Q Consensus 532 ~~S-~~~~v~e~F~~l~~~a 550 (608)
++| ...++.++|..+++..
T Consensus 160 ~tSa~~~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 160 PTSIWDESLYKAWSQIVCSL 179 (307)
T ss_dssp ECCTTSSHHHHHHHHHHHTT
T ss_pred EeeecCChHHHHHHHHHHHH
Confidence 888 3489999999998855
No 373
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Probab=99.37 E-value=3.3e-13 Score=126.96 Aligned_cols=137 Identities=20% Similarity=0.198 Sum_probs=107.3
Q ss_pred HHHHHHHhccCC-CCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHHHhcCCCc
Q psy3301 176 ALTRIFKVCDLD-NDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQRGRSH 254 (608)
Q Consensus 176 ~L~~~f~~~D~d-~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~~~~~~~e 254 (608)
.++++|..+|.| ++|.|+.+|+..+++.......+.+++..++..++.+ ++|.|++++|+.++... +.
T Consensus 26 el~~~f~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d------~~G~i~~~ef~~~~~~~---~~-- 94 (190)
T 2l2e_A 26 ELQQWYKGFFKDCPSGHLNKSEFQKIYKQFFPFGDPSAFAEYVFNVFDAD------KNGYIDFKEFICALSVT---SR-- 94 (190)
T ss_dssp HHHHHHHHHHHHSCCCEECHHHHHHHHHHHCCCSCHHHHHHHHHHHHCSS------STTCEEHHHHHHHHTTS---SC--
T ss_pred HHHHHHHHHHHhCCCCcCCHHHHHHHHHHhCCCCCccHHHHHHHHHhcCC------CCCeEeHHHHHHHHHHH---cC--
Confidence 466779999999 8999999999999988545556677899999999888 89999999999664310 00
Q ss_pred chhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccC----C----
Q psy3301 255 TTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLC----P---- 326 (608)
Q Consensus 255 ~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~----~---- 326 (608)
. ...+.++.+|+.||.|++|.|+.+|+..++... |
T Consensus 95 ----------------------------------~---~~~~~~~~~f~~~D~d~~G~i~~~e~~~~~~~~~~~~g~~~~ 137 (190)
T 2l2e_A 95 ----------------------------------G---ELNDKLIWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVK 137 (190)
T ss_dssp ----------------------------------S---CSHHHHHHHHHHHCTTSCSCBCHHHHHHHHHHHHHHHHHHSC
T ss_pred ----------------------------------C---CHHHHHHHHHhHccCCCCCcCcHHHHHHHHHHHHHHhccccC
Confidence 0 014578889999999999999999999998762 2
Q ss_pred ----CCCCCCCccccccceecCCCCccchhhHHhHhhh
Q psy3301 327 ----PECPPWTDREMRAMVATNSKGWITMQGFLCYWIL 360 (608)
Q Consensus 327 ----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~ 360 (608)
......+..++++.+|.|++|.|+|+||+....-
T Consensus 138 ~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~~ 175 (190)
T 2l2e_A 138 LPEDEDTPEKRVNKIFNMMDKNKDGQLTLEEFCEGSKR 175 (190)
T ss_dssp CCSSCCCTHHHHHHHHHHHTCCSSCCBCHHHHHHHHHT
T ss_pred cccccccHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHh
Confidence 0111233567888999999999999999987643
No 374
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium binding, EF-hand superfamily, S genomics, protein structure initiative, PSI; 2.10A {Danio rerio} PDB: 2q4u_A
Probab=99.37 E-value=1.5e-13 Score=136.85 Aligned_cols=154 Identities=14% Similarity=0.225 Sum_probs=112.8
Q ss_pred hHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhc---ccCC--CCChhhHHHHH----HHHHHhcCCCccCCCCcchhhH
Q psy3301 170 TPECIKALTRIFKVCDLDNDNLLSDKELNAFQRR---CFDA--PLSRDSLEDVK----IVIRKNINDGVSANNCITLNGF 240 (608)
Q Consensus 170 ~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~---~~g~--~~~~~el~~i~----~~~~~~~~~~~~~~~~i~~~~F 240 (608)
++.....++++|..+|.|++|.|+..|+..+++. .+|. .++++++..++ ..++.+ ++|.|+|++|
T Consensus 6 ~~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~~~~lg~~~~~~~~~~~~~~~~~f~~~D~d------~~g~i~~~Ef 79 (272)
T 2be4_A 6 ANLDAAGFLQIWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSAYDAT------FDGRLQIEEL 79 (272)
T ss_dssp CCCCHHHHHHHHHHHCTTCCSEEEGGGHHHHHHHHHHHHSTTSCCCHHHHHHHHHHHSCHHHHT------CCSEEEHHHH
T ss_pred HhcCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhcCC------CCCcEeHHHH
Confidence 3344567999999999999999999999999882 2688 89999988766 567777 7999999999
Q ss_pred HHHHHHHHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHH
Q psy3301 241 LFLHNLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQAR 320 (608)
Q Consensus 241 ~~l~~~~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~ 320 (608)
+.++....++ .=..++..+. ....+.++.+|+.||+|++|.|+.+|++.
T Consensus 80 ~~~~~~~~~~-----~~~~~~~~~~--------------------------~~~~~~l~~~F~~~D~d~~G~i~~~e~~~ 128 (272)
T 2be4_A 80 ANMILPQEEN-----FLLIFRREAP--------------------------LDNSVEFMKIWRKYDADSSGYISAAELKN 128 (272)
T ss_dssp HHHHSCHHHH-----HHHHHHHHSC--------------------------CCCHHHHHHHHHHHCTTCCSEEEGGGHHH
T ss_pred HHHHhhhhHH-----HHHHHhhccC--------------------------cccHHHHHHHHHHhCCCCCCccCHHHHHH
Confidence 9774210000 0000011000 00145688999999999999999999999
Q ss_pred hhccC----CCCCCCCCc----cccccceecCCCCccchhhHHhHhhh
Q psy3301 321 LFSLC----PPECPPWTD----REMRAMVATNSKGWITMQGFLCYWIL 360 (608)
Q Consensus 321 ~~~~~----~~~~~~~~~----~~~~~~~d~~~~g~i~~~ef~~~w~~ 360 (608)
++... |....+.+. ..+++.+|.|++|.|+|+||+..+..
T Consensus 129 ~l~~~~~~~g~~~~~~~~~~~~~~~~~~~D~~~dg~i~~~ef~~~~~~ 176 (272)
T 2be4_A 129 FLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLDLNDLARILAL 176 (272)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHHHCSSCSSEEEHHHHGGGSCC
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCCCCcCcHHHHHHHHhh
Confidence 99876 522222222 23888899999999999999998864
No 375
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.36 E-value=1.9e-13 Score=136.29 Aligned_cols=139 Identities=13% Similarity=0.076 Sum_probs=93.9
Q ss_pred eEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCc----CCCceEecceEeCCcceeE------eeeeccccc----
Q psy3301 409 VYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVE----CDPPYTINTTTVYGQEKYL------VLKEILVRD---- 474 (608)
Q Consensus 409 ~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~----~~~~~~i~~~~v~Gqe~~~------~l~~~~~~~---- 474 (608)
.+||+++|++|||||||++++++..+.....+..+... +.....+.-++++|++.|. .+...++..
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d 82 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRAD 82 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTTCTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEecCCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCC
Confidence 58999999999999999999998763322212111100 0001223445669998875 333444431
Q ss_pred ----ccccCCCCcccccc--cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHHHH
Q psy3301 475 ----EQLPVLLPVDVDCD--KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFVKL 546 (608)
Q Consensus 475 ----v~d~~l~~~~~~~~--~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~~l 546 (608)
|+| .++.+.... ......++|+++|+||+|+.+.+.+. .+..++++.++++ ++++| ++.|++++|..|
T Consensus 83 ~vi~V~D--~t~~e~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~-vi~~SA~~g~gi~el~~~i 158 (272)
T 3b1v_A 83 SILNVVD--ATNLERNLYLTTQLIETGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVP-VVATSALKQTGVDQVVKKA 158 (272)
T ss_dssp EEEEEEE--GGGHHHHHHHHHHHHHTCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSC-EEECBTTTTBSHHHHHHHH
T ss_pred EEEEEec--CCchHhHHHHHHHHHhcCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCC-EEEEEccCCCCHHHHHHHH
Confidence 566 554432111 12223689999999999998666554 6789999999986 89999 899999999999
Q ss_pred HHHHc
Q psy3301 547 ATMAA 551 (608)
Q Consensus 547 ~~~a~ 551 (608)
++.+.
T Consensus 159 ~~~~~ 163 (272)
T 3b1v_A 159 AHTTT 163 (272)
T ss_dssp HHSCT
T ss_pred HHHHh
Confidence 98653
No 376
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein STR and functional analyses, riken structural genomics/proteomi initiative; 2.20A {Homo sapiens} PDB: 2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A 2het_A
Probab=99.36 E-value=4.3e-13 Score=128.11 Aligned_cols=137 Identities=13% Similarity=0.199 Sum_probs=108.4
Q ss_pred HHHHHHHHhccCC-CCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHHHhcCCC
Q psy3301 175 KALTRIFKVCDLD-NDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQRGRS 253 (608)
Q Consensus 175 ~~L~~~f~~~D~d-~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~~~~~~~ 253 (608)
..++++|..+|.+ ++|.|+.+|+..+++.......+..++..++..++.+ ++|.|++++|+.++...... .
T Consensus 33 ~~i~~~f~~~d~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~~~~f~~~D~d------~~G~i~~~Ef~~~~~~~~~~-~- 104 (207)
T 2d8n_A 33 EELCSWYQSFLKDCPTGRITQQQFQSIYAKFFPDTDPKAYAQHVFRSFDSN------LDGTLDFKEYVIALHMTTAG-K- 104 (207)
T ss_dssp HHHHHHHHHHHHHCTTSEEEHHHHHHHHHHTCTTSCCHHHHHHHHHHHCTT------CCSEEEHHHHHHHHHHHSCS-S-
T ss_pred HHHHHHHHHHHhhCCCCCCCHHHHHHHHHHhccCCCcHHHHHHHHHHhcCC------CCCeEeHHHHHHHHHHHcCC-C-
Confidence 4567778888888 7999999999999987433347788899999999988 89999999999776532110 0
Q ss_pred cchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccC----C---
Q psy3301 254 HTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLC----P--- 326 (608)
Q Consensus 254 e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~----~--- 326 (608)
+ .+.++.+|+.||.|++|.|+.+|+..++... |
T Consensus 105 -------------------------------------~---~~~~~~~f~~~D~d~~G~I~~~E~~~~l~~~~~~~g~~~ 144 (207)
T 2d8n_A 105 -------------------------------------T---NQKLEWAFSLYDVDGNGTISKNEVLEIVMAIFKMITPED 144 (207)
T ss_dssp -------------------------------------S---STTHHHHHHHHCTTCSSEECHHHHHHHHHHHHHHSCHHH
T ss_pred -------------------------------------H---HHHHHHHHHHhcCCCCCeEcHHHHHHHHHHHHHHhcccc
Confidence 0 1347788999999999999999999999874 3
Q ss_pred -CCCCC------CCccccccceecCCCCccchhhHHhHhh
Q psy3301 327 -PECPP------WTDREMRAMVATNSKGWITMQGFLCYWI 359 (608)
Q Consensus 327 -~~~~~------~~~~~~~~~~d~~~~g~i~~~ef~~~w~ 359 (608)
....+ ..+..+++.+|.|++|.|+|+||+..+.
T Consensus 145 ~~~l~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~ 184 (207)
T 2d8n_A 145 VKLLPDDENTPEKRAEKIWKYFGKNDDDKLTEKEFIEGTL 184 (207)
T ss_dssp HHTSCTTTSSHHHHHHHHHHHTTCCTTCCEEHHHHHHHHH
T ss_pred CCCcccccccHHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 22332 2267888999999999999999999876
No 377
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.36 E-value=3e-13 Score=131.49 Aligned_cols=144 Identities=10% Similarity=-0.009 Sum_probs=89.5
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCC-----CceEecceEeCCc------ce----eEeeeecc
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECD-----PPYTINTTTVYGQ------EK----YLVLKEIL 471 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~-----~~~~i~~~~v~Gq------e~----~~~l~~~~ 471 (608)
...+||+|+|++|||||||+++|+++.+.....+..+..... ....+.-++.+|+ ++ |..+...+
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 106 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALA 106 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhh
Confidence 356899999999999999999999988752221111110000 1123334455888 55 33333321
Q ss_pred cc-c----ccccCCCCccc-c-c-c----ccc--CCCCCcEEEEEeCCCCCcchhcccc---cHHHHHHHcC--CCCceE
Q psy3301 472 VR-D----EQLPVLLPVDV-D-C-D----KYF--STSKIPVMLVAGKSDMPRARQDYLM---QPDIFCETHK--LSPAHS 532 (608)
Q Consensus 472 ~~-~----v~d~~l~~~~~-~-~-~----~~~--~~~~~p~ilVgnK~DL~~~~~~~~~---~~~~~~~~~~--~~~~~~ 532 (608)
.. + ||| +++... . . . ... ..+++|+++|+||+||.+.+++... ...++++..+ ++ +++
T Consensus 107 ~~~d~~i~v~d--~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 183 (228)
T 2qu8_A 107 HINGVILFIID--ISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIK-FSS 183 (228)
T ss_dssp TSSEEEEEEEE--TTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEE-EEE
T ss_pred ccccEEEEEEe--cccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCce-EEE
Confidence 11 1 677 665431 1 0 0 111 1248999999999999876655433 4677777776 54 888
Q ss_pred Ec--cCCCHHHHHHHHHHHHcCC
Q psy3301 533 FS--AANNDREVFVKLATMAAFP 553 (608)
Q Consensus 533 ~S--~~~~v~e~F~~l~~~a~~p 553 (608)
+| ++.|++++|..|++.+...
T Consensus 184 ~SA~~g~gi~~l~~~l~~~i~~~ 206 (228)
T 2qu8_A 184 FSTLTGVGVEQAKITACELLKND 206 (228)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHHHHHH
Confidence 99 8999999999999988543
No 378
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein, EF-hand, calcium ION, metal binding protein; HET: 1PE P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Probab=99.35 E-value=3e-13 Score=127.15 Aligned_cols=138 Identities=18% Similarity=0.152 Sum_probs=108.4
Q ss_pred HHHHHHHHhccCC-CCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHHHhcCCC
Q psy3301 175 KALTRIFKVCDLD-NDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQRGRS 253 (608)
Q Consensus 175 ~~L~~~f~~~D~d-~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~~~~~~~ 253 (608)
+.++++|..+|.+ ++|.|+.+|+..+++..++...+..++..++..++.+ ++|.|++++|+.++......
T Consensus 25 ~~i~~~f~~fd~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d------~~g~i~~~ef~~~~~~~~~~--- 95 (190)
T 1g8i_A 25 KEVQQWYKGFIKDCPSGQLDAAGFQKIYKQFFPFGDPTKFATFVFNVFDEN------KDGRIEFSEFIQALSVTSRG--- 95 (190)
T ss_dssp HHHHHHHHHHHHHCTTSEEEHHHHHHHHHHHCTTSCTHHHHHHHHHHHCTT------CSSEEEHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhCCCCcCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhcC------CCCeEeHHHHHHHHHHhcCC---
Confidence 4567778888887 8999999999999987655456677899999999988 89999999999776543211
Q ss_pred cchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhcc----CCCC-
Q psy3301 254 HTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSL----CPPE- 328 (608)
Q Consensus 254 e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~----~~~~- 328 (608)
...+.++.+|+.||.|++|.|+.+|+..++.. .|..
T Consensus 96 ---------------------------------------~~~~~~~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~g~~~ 136 (190)
T 1g8i_A 96 ---------------------------------------TLDEKLRWAFKLYDLDNDGYITRNEMLDIVDAIYQMVGNTV 136 (190)
T ss_dssp ---------------------------------------CHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHHHHC----
T ss_pred ---------------------------------------CHHHHHHHHHHhhcCCCCCeECHHHHHHHHHHHHHHhCCcc
Confidence 01456888999999999999999999999887 3411
Q ss_pred -------CCCCCccccccceecCCCCccchhhHHhHhhh
Q psy3301 329 -------CPPWTDREMRAMVATNSKGWITMQGFLCYWIL 360 (608)
Q Consensus 329 -------~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~ 360 (608)
....+..++++.+|.|++|.|+++||+..+.-
T Consensus 137 ~~~~~~~~~~~~~~~~f~~~D~d~dG~i~~~ef~~~~~~ 175 (190)
T 1g8i_A 137 ELPEEENTPEKRVDRIFAMMDKNADGKLTLQEFQEGSKA 175 (190)
T ss_dssp -CCGGGSSHHHHHHHHHHHHCSSCSSEEEHHHHHHHHHH
T ss_pred CCccccccHHHHHHHHHHHhcCCCCCcEeHHHHHHHHHh
Confidence 11123567888899999999999999997653
No 379
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase activating protein, GCAP, GCAP3, GCAP-3, lyase activator; 3.00A {Homo sapiens}
Probab=99.35 E-value=1.2e-13 Score=132.62 Aligned_cols=138 Identities=17% Similarity=0.220 Sum_probs=104.5
Q ss_pred HHHHHHHHHHhccCC-CCCccCHHHHHHHhhcccCCCCC-hhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHHHhc
Q psy3301 173 CIKALTRIFKVCDLD-NDNLLSDKELNAFQRRCFDAPLS-RDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQR 250 (608)
Q Consensus 173 ~~~~L~~~f~~~D~d-~dg~l~~~El~~~~~~~~g~~~~-~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~~~~ 250 (608)
..+.++++|..+|.+ ++|.|+.+|+..+++. +|..+. .++++.++..++.+ ++|.|+|++|+.++.....
T Consensus 17 s~~ei~~~f~~fD~~~~~G~is~~El~~~l~~-~~~~~~~~~~~~~~f~~~D~d------~dG~I~~~Ef~~~~~~~~~- 88 (211)
T 2ggz_A 17 PTQETHVWYRTFMMEYPSGLQTLHEFKTLLGL-QGLNQKANKHIDQVYNTFDTN------KDGFVDFLEFIAAVNLIMQ- 88 (211)
T ss_dssp -------CCCSHHHHCTTSEEEHHHHHHHTTC-CSCCHHHHHHHHHHHHHHCTT------CSSEEEHHHHHHHHHHHSC-
T ss_pred CHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHH-hCCCcchHHHHHHHHHHHcCC------CCCeEeHHHHHHHHHHhcc-
Confidence 345578889999988 8999999999999986 565443 45689999999888 8999999999977653210
Q ss_pred CCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCCC---
Q psy3301 251 GRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPP--- 327 (608)
Q Consensus 251 ~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~~--- 327 (608)
. ...+.++.+|+.||.|++|+|+.+||+.++...+.
T Consensus 89 --~---------------------------------------~~~~~l~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~ 127 (211)
T 2ggz_A 89 --E---------------------------------------KMEQKLKWYFKLYDADGNGSIDKNELLDMFMAVQALNG 127 (211)
T ss_dssp --S---------------------------------------SHHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHTTSSC
T ss_pred --C---------------------------------------chHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhhcC
Confidence 0 01467889999999999999999999999987641
Q ss_pred --CCCC-CCccccccceecCCCCccchhhHHhHhh
Q psy3301 328 --ECPP-WTDREMRAMVATNSKGWITMQGFLCYWI 359 (608)
Q Consensus 328 --~~~~-~~~~~~~~~~d~~~~g~i~~~ef~~~w~ 359 (608)
...+ .....+++.+|.|++|.|+|+||+..+.
T Consensus 128 ~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~ 162 (211)
T 2ggz_A 128 QQTLSPEEFINLVFHKIDINNDGELTLEEFINGMA 162 (211)
T ss_dssp CCSCTHHHHHHHHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 1122 1246778889999999999999999875
No 380
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.35 E-value=3.3e-13 Score=133.70 Aligned_cols=142 Identities=13% Similarity=0.013 Sum_probs=97.2
Q ss_pred ceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCC-----ceEecceEeCCcceeEeee------ecccc--c
Q psy3301 408 NVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDP-----PYTINTTTVYGQEKYLVLK------EILVR--D 474 (608)
Q Consensus 408 ~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~-----~~~i~~~~v~Gqe~~~~l~------~~~~~--~ 474 (608)
+.++|+++|++|||||||++++++..+.....+..+...... ...+.-++++|++.+.... ..++. .
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~ 83 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGD 83 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcC
Confidence 458999999999999999999999776433222222200011 2334445558988776432 33321 1
Q ss_pred ------ccccCCCCcccccc--cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHH
Q psy3301 475 ------EQLPVLLPVDVDCD--KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFV 544 (608)
Q Consensus 475 ------v~d~~l~~~~~~~~--~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~ 544 (608)
|+| .++.+.... ......++|+++|+||+|+.+.+.+. .+..++++.++++ ++++| ++.|++++|.
T Consensus 84 ~d~ii~V~D--~t~~~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~-~~~~~l~~~lg~~-vi~~SA~~g~gi~el~~ 159 (258)
T 3a1s_A 84 ADLVILVAD--SVNPEQSLYLLLEILEMEKKVILAMTAIDEAKKTGMK-IDRYELQKHLGIP-VVFTSSVTGEGLEELKE 159 (258)
T ss_dssp CSEEEEEEE--TTSCHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCC-BCHHHHHHHHCSC-EEECCTTTCTTHHHHHH
T ss_pred CCEEEEEeC--CCchhhHHHHHHHHHhcCCCEEEEEECcCCCCccchH-HHHHHHHHHcCCC-EEEEEeeCCcCHHHHHH
Confidence 666 555442211 22234589999999999998766654 4689999999986 88999 8999999999
Q ss_pred HHHHHHcCC
Q psy3301 545 KLATMAAFP 553 (608)
Q Consensus 545 ~l~~~a~~p 553 (608)
.|++.+..+
T Consensus 160 ~i~~~~~~~ 168 (258)
T 3a1s_A 160 KIVEYAQKN 168 (258)
T ss_dssp HHHHHHHSS
T ss_pred HHHHHhhcc
Confidence 999987543
No 381
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell membrane, hydrolase, MEMB protease, thiol protease, phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A 1df0_A 1u5i_A 1kfu_L 1kfx_L
Probab=99.34 E-value=4.3e-13 Score=151.62 Aligned_cols=137 Identities=18% Similarity=0.215 Sum_probs=118.4
Q ss_pred cChHHH-HHHHHHHHHhccCCCCCccCHHHHHHHhhccc-------CCCCChhhHHHHHHHHHHhcCCCccCCCCcchhh
Q psy3301 168 ELTPEC-IKALTRIFKVCDLDNDNLLSDKELNAFQRRCF-------DAPLSRDSLEDVKIVIRKNINDGVSANNCITLNG 239 (608)
Q Consensus 168 ~l~~~~-~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~-------g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~ 239 (608)
.++++. .+.++++|..+| |+||.|+.+||..+++..+ |..++.++++.++..++.+ ++|.|+|+|
T Consensus 524 ~ls~~e~~~~l~~~F~~~D-d~dG~Is~~El~~~L~~l~~~~~~~~g~~~s~~~~~~l~~~~D~d------~~G~I~f~E 596 (714)
T 3bow_A 524 EANEEDIGDGFRRLFAQLA-GEDAEISAFELQTILRRVLAKREDIKSDGFSIETCKIMVDMLDED------GSGKLGLKE 596 (714)
T ss_dssp CCSGGGCCHHHHHHHHHHH-GGGTSBCHHHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHCCS------SCSSBCHHH
T ss_pred CCChhhHHHHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHhCCC------CCCcCcHHH
Confidence 355666 788999999999 9999999999999998853 6789999999999999988 899999999
Q ss_pred HHHHHHHHHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHH
Q psy3301 240 FLFLHNLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQA 319 (608)
Q Consensus 240 F~~l~~~~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~ 319 (608)
|+.++.. .+.++.+|+.||+|++|.|+.+||+
T Consensus 597 F~~l~~~------------------------------------------------~~~l~~~F~~~D~d~dG~Is~~El~ 628 (714)
T 3bow_A 597 FYILWTK------------------------------------------------IQKYQKIYREIDVDRSGTMNSYEMR 628 (714)
T ss_dssp HHHHHHH------------------------------------------------HHHHHHHHHHHCTTCCSSEEHHHHH
T ss_pred HHHHHHH------------------------------------------------HHHHHHHHHHhCCCCCCeECHHHHH
Confidence 9987642 2568889999999999999999999
Q ss_pred HhhccCCCCCCCCCccccccceecCCCCccchhhHHhHhhh
Q psy3301 320 RLFSLCPPECPPWTDREMRAMVATNSKGWITMQGFLCYWIL 360 (608)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~ 360 (608)
.++..+|....+.+.+.++..+| |+||.|+|+||++...-
T Consensus 629 ~~L~~~G~~ls~~~~~~l~~~~D-d~dG~Isf~EF~~~l~~ 668 (714)
T 3bow_A 629 KALEEAGFKLPCQLHQVIVARFA-DDELIIDFDNFVRCLVR 668 (714)
T ss_dssp HHHHHTTEECCHHHHHHHHHHHS-CTTCEECHHHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHHHHhC-CCCCeEcHHHHHHHHHH
Confidence 99999874444455778888899 99999999999998653
No 382
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Probab=99.33 E-value=6.5e-13 Score=112.91 Aligned_cols=103 Identities=15% Similarity=0.184 Sum_probs=84.2
Q ss_pred ccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHHHhcCCCcchhHHhhhccCCCCccccccccCCCCCCC
Q psy3301 204 CFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIP 283 (608)
Q Consensus 204 ~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~ 283 (608)
.+|. +++++++.+++.++ . +|.|+|++|+.++.. .
T Consensus 2 slG~-~~~~e~~~l~~~~d-~-------~g~i~~~eF~~~~~~---~--------------------------------- 36 (108)
T 2pvb_A 2 SFAG-LKDADVAAALAACS-A-------ADSFKHKEFFAKVGL---A--------------------------------- 36 (108)
T ss_dssp CCTT-SCHHHHHHHHHHTC-S-------TTCCCHHHHHHHHTG---G---------------------------------
T ss_pred CcCC-CCHHHHHHHHHHhC-C-------CCcCcHHHHHHHHhC---C---------------------------------
Confidence 3788 99999999999876 2 789999999977521 0
Q ss_pred CCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccC---CCCCCCCCccccccceecCCCCccchhhHHhHhh
Q psy3301 284 ATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLC---PPECPPWTDREMRAMVATNSKGWITMQGFLCYWI 359 (608)
Q Consensus 284 ~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~---~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~ 359 (608)
....+.++.+|+.||+|++|+|+.+||+.+++.+ |....+.+...+++.+|.|++|.|+|+||+..+.
T Consensus 37 --------~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~ 107 (108)
T 2pvb_A 37 --------SKSLDDVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLADGDKDGDGMIGVDEFAAMIK 107 (108)
T ss_dssp --------GSCHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTSCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred --------hhHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHh
Confidence 1114678999999999999999999999999988 5334445577888999999999999999998763
No 383
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.33 E-value=4.6e-12 Score=133.26 Aligned_cols=145 Identities=17% Similarity=0.115 Sum_probs=100.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCCC-cCCCCCcceEecCccCCC-ceeEEEEeCCCCCCC-------hHHHHHHHHhc
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFPE-LVPSKAEEITIPPDVTPE-MVPTHIVDYSEVDQT-------VDELTEEIQKA 81 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~~-~~~~~~~~~~i~~~~~~~-~~~~~i~Dt~G~~~~-------~~~~~~~~~~a 81 (608)
-.|+|+|++|||||||+++|++..... .++.++....+. .+... ...+.+||++|.... .......+..+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G-~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era 236 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLG-VVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIART 236 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEE-EEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceee-EEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence 468999999999999999999875322 133222111111 11222 367899999997432 12223345679
Q ss_pred CcEEEEEEcCChhhHHHHHHhHHHHHhhhc-cCCCCcEEEEEeCcCCCCCCC---------------cccCcccCcCHHH
Q psy3301 82 HVICLVYSVVDDASIDRLSSHWLPFLRNCL-VDTCLPIVLVGNKVDLVDYST---------------VESSAKTLKNISE 145 (608)
Q Consensus 82 d~iilV~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~~~~---------------~e~SAk~~~~i~~ 145 (608)
+.++.|+|++ ...+..+. .|...+.... ...+.|.+||+||+|+..... +.+||+++.|+++
T Consensus 237 ~~lL~vvDls-~~~~~~ls-~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g~gi~e 314 (416)
T 1udx_A 237 RVLLYVLDAA-DEPLKTLE-TLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPA 314 (416)
T ss_dssp SEEEEEEETT-SCHHHHHH-HHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred HhhhEEeCCc-cCCHHHHH-HHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhcCCeEEEEECCCccCHHH
Confidence 9999999998 66677766 5655554321 123579999999999975311 8899999999999
Q ss_pred HHHHHHHHHhCCC
Q psy3301 146 MFYYAQKAVLHPM 158 (608)
Q Consensus 146 lf~~l~~~i~~~~ 158 (608)
+++.+.+.+....
T Consensus 315 L~~~i~~~l~~~~ 327 (416)
T 1udx_A 315 LKEALHALVRSTP 327 (416)
T ss_dssp HHHHHHHHHHTSC
T ss_pred HHHHHHHHHHhcc
Confidence 9999999986543
No 384
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium binding, EF-hand superfamily, S genomics, protein structure initiative, PSI; 2.10A {Danio rerio} PDB: 2q4u_A
Probab=99.32 E-value=2.9e-13 Score=134.80 Aligned_cols=150 Identities=17% Similarity=0.239 Sum_probs=109.7
Q ss_pred HHHHHHHHHhccCCCCCccCHHHHHHHhhccc---CCCCChhhHHH----HHHHHHHhcCCCccCCCCcchhhHHHHHHH
Q psy3301 174 IKALTRIFKVCDLDNDNLLSDKELNAFQRRCF---DAPLSRDSLED----VKIVIRKNINDGVSANNCITLNGFLFLHNL 246 (608)
Q Consensus 174 ~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~---g~~~~~~el~~----i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~ 246 (608)
...++++|..+|.|++|.|+.+|+..+++... |.+++.++++. ++..++.+ ++|.|++++|+.++..
T Consensus 103 ~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~D~~------~dg~i~~~ef~~~~~~ 176 (272)
T 2be4_A 103 SVEFMKIWRKYDADSSGYISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKN------KDGRLDLNDLARILAL 176 (272)
T ss_dssp HHHHHHHHHHHCTTCCSEEEGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHCSS------CSSEEEHHHHGGGSCC
T ss_pred HHHHHHHHHHhCCCCCCccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccC------CCCcCcHHHHHHHHhh
Confidence 34688999999999999999999999988743 88888888765 66666666 7899999999855310
Q ss_pred HHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCcccc-CHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccC
Q psy3301 247 FMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAEL-SDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLC 325 (608)
Q Consensus 247 ~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eL-s~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~ 325 (608)
.+ ..+ +... ...+ .....+.++.+|+.||+|++|+|+.+||+.++..+
T Consensus 177 ------~~-------------------~~~-----~~~~-~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~E~~~~l~~~ 225 (272)
T 2be4_A 177 ------QE-------------------NFL-----LQFK-MDASSQVERKRDFEKIFAHYDVSRTGALEGPEVDGFVKDM 225 (272)
T ss_dssp ------SS-------------------CSS-----TTSC-CCHHHHHHHHHHHHHHHHHHCTTCCSEEETHHHHHHHHHH
T ss_pred ------hH-------------------HHH-----hhhh-hhhccccccHHHHHHHHHHhCCCCCCeecHHHHHHHHHHH
Confidence 00 000 0000 0000 11224678999999999999999999999999876
Q ss_pred CC----CCCCCCccc----cccceecCCCCccchhhHHhHhhh
Q psy3301 326 PP----ECPPWTDRE----MRAMVATNSKGWITMQGFLCYWIL 360 (608)
Q Consensus 326 ~~----~~~~~~~~~----~~~~~d~~~~g~i~~~ef~~~w~~ 360 (608)
+. ...+.+... ++..+|.|+||.|+|+||+....+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~l~~~~D~d~dG~is~~EF~~~~~~ 268 (272)
T 2be4_A 226 MELVRPSISGGDLDKFRECLLTHCDMNKDGKIQKSELALCLGL 268 (272)
T ss_dssp HHHHSSSCCHHHHHHHHHHHHHHHCCSTTCEEEHHHHHHHTTC
T ss_pred HHHcCCCCCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHcc
Confidence 52 233332333 889999999999999999987664
No 385
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal specific guanylate cyclase activator; 2.40A {Bos taurus} SCOP: a.39.1.5
Probab=99.32 E-value=1.7e-12 Score=122.38 Aligned_cols=136 Identities=18% Similarity=0.182 Sum_probs=105.6
Q ss_pred HHHHHHHHhccCC-CCCccCHHHHHHHhhcccCCCC-ChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHHHhcCC
Q psy3301 175 KALTRIFKVCDLD-NDNLLSDKELNAFQRRCFDAPL-SRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQRGR 252 (608)
Q Consensus 175 ~~L~~~f~~~D~d-~dg~l~~~El~~~~~~~~g~~~-~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~~~~~~ 252 (608)
+.++++|..+|.+ ++|.|+.+|+..+++.+ +... +...+..++..++.+ ++|.|++++|+.++.....
T Consensus 25 ~~i~~~f~~fd~~~~~G~i~~~e~~~~l~~~-~~~~~~~~~~~~~f~~~D~d------~~g~i~~~Ef~~~~~~~~~--- 94 (193)
T 1bjf_A 25 HEIQEWYKGFLRDCPSGHLSMEEFKKIYGNF-FPYGDASKFAEHVFRTFDAN------GDGTIDFREFIIALSVTSR--- 94 (193)
T ss_dssp HHHHHHHHHHHHHSTTSEEEHHHHHHHHTTT-SSSSCCHHHHHHHHHHHCSS------CSSEEEHHHHHHHHHHHTS---
T ss_pred HHHHHHHHHHHHHCCCCCcCHHHHHHHHHHh-cCcCChHHHHHHHHHHhCCC------CCCcCcHHHHHHHHHHHcC---
Confidence 3467778888888 89999999999999874 4433 466789999999888 8999999999977543210
Q ss_pred CcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccC----CC-
Q psy3301 253 SHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLC----PP- 327 (608)
Q Consensus 253 ~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~----~~- 327 (608)
. ...+.++.+|+.||.|++|.|+.+|+..++... |.
T Consensus 95 ~---------------------------------------~~~~~~~~~f~~~D~d~~G~I~~~E~~~~~~~~~~~~g~~ 135 (193)
T 1bjf_A 95 G---------------------------------------KLEQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSV 135 (193)
T ss_dssp S---------------------------------------CHHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHTTCCCT
T ss_pred C---------------------------------------CHHHHHHHHHhhcCCCCCCeECHHHHHHHHHHHHHHhccc
Confidence 0 014678899999999999999999999998652 31
Q ss_pred -CCCCC------CccccccceecCCCCccchhhHHhHhh
Q psy3301 328 -ECPPW------TDREMRAMVATNSKGWITMQGFLCYWI 359 (608)
Q Consensus 328 -~~~~~------~~~~~~~~~d~~~~g~i~~~ef~~~w~ 359 (608)
..+.. ....+++.+|.|++|.|+++||+..+.
T Consensus 136 ~~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~ 174 (193)
T 1bjf_A 136 MKMPEDESTPEKRTEKIFRQMDTNRDGKLSLEEFIRGAK 174 (193)
T ss_dssp TTSCGGGSSHHHHHHHHHHHSCTTCSSEECHHHHHHHHH
T ss_pred cCCCcccccHHHHHHHHHHHhCCCCCCeEeHHHHHHHHh
Confidence 11111 145788899999999999999999874
No 386
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=99.32 E-value=7.7e-13 Score=112.65 Aligned_cols=103 Identities=17% Similarity=0.181 Sum_probs=84.8
Q ss_pred cCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHHHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCC
Q psy3301 205 FDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPA 284 (608)
Q Consensus 205 ~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~ 284 (608)
+|..+++++++.+++.++ . +|.|+|++|+.++.. .
T Consensus 3 l~~~~~~~ei~~~~~~~D-~-------~g~i~~~eF~~~~~~---~---------------------------------- 37 (109)
T 3fs7_A 3 ITDILSAKDIESALSSCQ-A-------ADSFNYKSFFSTVGL---S---------------------------------- 37 (109)
T ss_dssp GGGTSCHHHHHHHHHHTC-S-------TTCCCHHHHHHHHTC---T----------------------------------
T ss_pred ccCcCCHHHHHHHHHhcC-C-------CCcCcHHHHHHHHhc---C----------------------------------
Confidence 677889999999999886 2 789999999977531 0
Q ss_pred CCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccC---CCCCCCCCccccccceecCCCCccchhhHHhHhh
Q psy3301 285 TCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLC---PPECPPWTDREMRAMVATNSKGWITMQGFLCYWI 359 (608)
Q Consensus 285 ~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~---~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~ 359 (608)
....+.++.+|+.||+|++|+|+.+||+.++..+ |....+.+...+++.+|.|++|.|+|+||+..|.
T Consensus 38 -------~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~D~~~dg~i~~~EF~~~~~ 108 (109)
T 3fs7_A 38 -------SKTPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAGDTDGDGKIGVEEFQSLVK 108 (109)
T ss_dssp -------TCCHHHHHHHHHHHSTTCSSSBCHHHHHTTGGGTCTTSCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHT
T ss_pred -------CCcHHHHHHHHHHHCCCCCCeEeHHHHHHHHHHHhcccccCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHh
Confidence 0114678999999999999999999999999998 5334445577888999999999999999998874
No 387
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.32 E-value=7.4e-12 Score=140.28 Aligned_cols=116 Identities=16% Similarity=0.112 Sum_probs=83.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCC---------------cceEe---cCccCCCceeEEEEeCCCCC
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKA---------------EEITI---PPDVTPEMVPTHIVDYSEVD 68 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~---------------~~~~i---~~~~~~~~~~~~i~Dt~G~~ 68 (608)
..+..+|+|+|+.|+|||||+++|++........... ...++ ...+....+.++||||||++
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG 85 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence 3457799999999999999999999544321110000 00011 11233456889999999999
Q ss_pred CChHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCC
Q psy3301 69 QTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLV 128 (608)
Q Consensus 69 ~~~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 128 (608)
+|...+...++.+|++++|+|+++....+.. .+...+.. .++|+++|+||+|+.
T Consensus 86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~--~~~~~~~~----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 86 DFVGEIRGALEAADAALVAVSAEAGVQVGTE--RAWTVAER----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCSCHHHH--HHHHHHHH----TTCCEEEEEECGGGC
T ss_pred chHHHHHHHHhhcCcEEEEEcCCcccchhHH--HHHHHHHH----ccCCEEEEecCCchh
Confidence 9999999999999999999999887654443 34444442 378999999999986
No 388
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.32 E-value=3e-12 Score=139.36 Aligned_cols=139 Identities=15% Similarity=0.065 Sum_probs=98.6
Q ss_pred CCceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCC---CceEecceEeCCcceeEeeeeccccc------cc
Q psy3301 406 TRNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECD---PPYTINTTTVYGQEKYLVLKEILVRD------EQ 476 (608)
Q Consensus 406 ~r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~---~~~~i~~~~v~Gqe~~~~l~~~~~~~------v~ 476 (608)
....+||+|+|++|||||||+++|+++.+.... +|++.+... ..+.+.-++++|++.|..++..+++. ||
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~-~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~ 397 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVV 397 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSSCCCCC-CCSSEEEEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEE
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCCCCCcC-CccceeEEEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 346799999999999999999999999876543 455541110 22344455669999999998888877 78
Q ss_pred ccCCCCcc--cccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCC-------CceEEc--cCCC
Q psy3301 477 LPVLLPVD--VDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLS-------PAHSFS--AANN 538 (608)
Q Consensus 477 d~~l~~~~--~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~-------~~~~~S--~~~~ 538 (608)
| +++.+ ..+. +.....++|+|||+||+||.+.. ..+++.+..+.. +++++| ++.|
T Consensus 398 D--~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g 470 (497)
T 3lvq_E 398 D--CADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM-----KPHEIQEKLGLTRIRDRNWYVQPSCATSGDG 470 (497)
T ss_dssp E--TTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCC-----CHHHHHHHTTCTTCCSSCEEEEECBTTTTBT
T ss_pred E--CcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCC-----CHHHHHHHhchhhhhcCCeEEEEEECCCCCC
Confidence 8 77764 2222 11223689999999999997532 234555555543 267888 8999
Q ss_pred HHHHHHHHHHHHcC
Q psy3301 539 DREVFVKLATMAAF 552 (608)
Q Consensus 539 v~e~F~~l~~~a~~ 552 (608)
|+++|..|++.+..
T Consensus 471 i~~l~~~l~~~~~~ 484 (497)
T 3lvq_E 471 LYEGLTWLTSNYKS 484 (497)
T ss_dssp HHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987643
No 389
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A
Probab=99.31 E-value=6.1e-13 Score=113.41 Aligned_cols=104 Identities=13% Similarity=0.170 Sum_probs=84.6
Q ss_pred ccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHHHhcCCCcchhHHhhhccCCCCccccccccCCCCCCC
Q psy3301 204 CFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIP 283 (608)
Q Consensus 204 ~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~ 283 (608)
++|..+++++++.++..++ . +|.|+|++|+.++..
T Consensus 2 alG~~~t~~e~~~~~~~~d-~-------~g~i~~~ef~~~~~~------------------------------------- 36 (110)
T 1pva_A 2 AAKDLLKADDIKKALDAVK-A-------EGSFNHKKFFALVGL------------------------------------- 36 (110)
T ss_dssp CHHHHSCHHHHHHHHHHTC-S-------TTCCCHHHHHHHHTC-------------------------------------
T ss_pred cccccCCHHHHHHHHHhcC-C-------CCcCcHHHHHHHHcc-------------------------------------
Confidence 3678899999999999876 2 789999999977421
Q ss_pred CCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccC---CCCCCCCCccccccceecCCCCccchhhHHhHhh
Q psy3301 284 ATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLC---PPECPPWTDREMRAMVATNSKGWITMQGFLCYWI 359 (608)
Q Consensus 284 ~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~---~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~ 359 (608)
+....+.++.+|+.||+|++|+|+.+||+.++..+ |....+.+...+++.+|.|++|.|+|+||+..+.
T Consensus 37 -------~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~~ 108 (110)
T 1pva_A 37 -------KAMSANDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAADKDGDGKIGIDEFETLVH 108 (110)
T ss_dssp -------TTSCHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTCCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred -------CcchHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHH
Confidence 01125678999999999999999999999999988 4333334567888999999999999999998764
No 390
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.30 E-value=2.6e-12 Score=130.22 Aligned_cols=142 Identities=15% Similarity=0.181 Sum_probs=74.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHcC-CCCCcC--------CCCCcceEec--CccCCCceeEEEEeCCCC-------CCCh
Q psy3301 10 NVRILLLGDRHVGKTSLILSLVSE-EFPELV--------PSKAEEITIP--PDVTPEMVPTHIVDYSEV-------DQTV 71 (608)
Q Consensus 10 ~~kI~lvG~~~vGKTSLi~~l~~~-~~~~~~--------~~~~~~~~i~--~~~~~~~~~~~i~Dt~G~-------~~~~ 71 (608)
.++|+|+|++|||||||+++|.+. .++... .++.....+. .........+.+|||+|. +.+.
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~ 97 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 97 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CT
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHH
Confidence 589999999999999999999876 443221 1111111111 111233467899999998 5555
Q ss_pred HHHH-------HHHHhcCcEE-----------EEEEcCC-hhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC
Q psy3301 72 DELT-------EEIQKAHVIC-----------LVYSVVD-DASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST 132 (608)
Q Consensus 72 ~~~~-------~~~~~ad~ii-----------lV~d~~~-~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~ 132 (608)
.... .+++.+.+.. ++|..+. ..+++.+...++..+ ..+.|+++|+||+|+.....
T Consensus 98 ~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l-----~~~~~iilV~~K~Dl~~~~e 172 (301)
T 2qnr_A 98 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-----HNKVNIVPVIAKADTLTLKE 172 (301)
T ss_dssp THHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHH-----TTTSCEEEEECCGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHH-----HhcCCEEEEEEeCCCCCHHH
Confidence 5554 5666554321 4444331 223444432233322 24679999999999975321
Q ss_pred -------------------cccCcccCcCHHHHHHHHHHHHhCC
Q psy3301 133 -------------------VESSAKTLKNISEMFYYAQKAVLHP 157 (608)
Q Consensus 133 -------------------~e~SAk~~~~i~~lf~~l~~~i~~~ 157 (608)
+++||+++ |++++|..+.+.+...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~ 215 (301)
T 2qnr_A 173 RERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKAS 215 (301)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcC
Confidence 89999999 9999999999888643
No 391
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.29 E-value=1.2e-12 Score=135.87 Aligned_cols=89 Identities=12% Similarity=0.050 Sum_probs=66.9
Q ss_pred CceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCC----
Q psy3301 55 EMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDY---- 130 (608)
Q Consensus 55 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~---- 130 (608)
.++.+.||||+|..+. ....+..+|++++|+|....+..+.+. ......|+++|+||+|+...
T Consensus 170 ~~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~----------~~~~~~p~ivVlNK~Dl~~~~~~~ 236 (355)
T 3p32_A 170 AGFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIK----------KGVLELADIVVVNKADGEHHKEAR 236 (355)
T ss_dssp TTCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCC----------TTSGGGCSEEEEECCCGGGHHHHH
T ss_pred CCCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHH----------HhHhhcCCEEEEECCCCcChhHHH
Confidence 4578999999996543 334468999999999988766543322 11234699999999998632
Q ss_pred --------------------C--CcccCcccCcCHHHHHHHHHHHHhC
Q psy3301 131 --------------------S--TVESSAKTLKNISEMFYYAQKAVLH 156 (608)
Q Consensus 131 --------------------~--~~e~SAk~~~~i~~lf~~l~~~i~~ 156 (608)
. .+++||++|.||++++..+.+.+..
T Consensus 237 ~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 237 LAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 1 1789999999999999999888743
No 392
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=99.29 E-value=1.7e-12 Score=128.61 Aligned_cols=142 Identities=16% Similarity=0.187 Sum_probs=108.7
Q ss_pred ChHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHHH
Q psy3301 169 LTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFM 248 (608)
Q Consensus 169 l~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~~ 248 (608)
++.+.+..+.+.|.. .+++|.|+.+|+..+++...+...+..++..++..++.+ ++|.|++++|+.++....
T Consensus 88 ~s~~ei~~l~~~fd~--~~~~G~I~~~ef~~~l~~~~~~~~~~~~~~~~f~~~D~d------~dG~I~~~Ef~~~l~~~~ 159 (256)
T 2jul_A 88 FTKKELQSLYRGFKN--ECPTGLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDAD------GNGAIHFEDFVVGLSILL 159 (256)
T ss_dssp SCHHHHHHHHHHHHH--HCTTSSEEHHHHHHHHHHHCCSSCCHHHHHHHHHHSSCS------CCSEECSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh--hCCCCcCCHHHHHHHHHHHcccCCcHHHHHHHHHHhccC------CCCcCcHHHHHHHHHHHh
Confidence 455555555555542 247999999999999998656677888899999999888 899999999997765432
Q ss_pred hcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccC---
Q psy3301 249 QRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLC--- 325 (608)
Q Consensus 249 ~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~--- 325 (608)
.. ...+.++.+|+.||.|++|+|+.+|+..++..+
T Consensus 160 ~~------------------------------------------~~~~~l~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~ 197 (256)
T 2jul_A 160 RG------------------------------------------TVHEKLKWAFNLYDINKDGCITKEEMLAIMKSIYDM 197 (256)
T ss_dssp SC------------------------------------------CHHHHHHHHHHHTCCSSSSCBCHHHHHHHHHHHHHH
T ss_pred cc------------------------------------------ChHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHH
Confidence 11 014678899999999999999999999998765
Q ss_pred -CCCC--------CCCCccccccceecCCCCccchhhHHhHhhh
Q psy3301 326 -PPEC--------PPWTDREMRAMVATNSKGWITMQGFLCYWIL 360 (608)
Q Consensus 326 -~~~~--------~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~ 360 (608)
|... ...++.++++.+|.|+||.|+|+||+..+.-
T Consensus 198 ~g~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~Is~~Ef~~~~~~ 241 (256)
T 2jul_A 198 MGRHTYPILREDAPLEHVERFFQKMDRNQDGVVTIDEFLETCQK 241 (256)
T ss_dssp CCCCCSCCSCCCCHHHHHHHHHHHSCCSTTCSBCHHHHHHHHHH
T ss_pred hCCCCCcccchhhHHHHHHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 4111 1122567888999999999999999987653
No 393
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4
Probab=99.28 E-value=8.2e-13 Score=112.48 Aligned_cols=103 Identities=12% Similarity=0.185 Sum_probs=84.7
Q ss_pred cCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHHHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCC
Q psy3301 205 FDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPA 284 (608)
Q Consensus 205 ~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~ 284 (608)
+|..+++++++.++..++ . +|.|+|++|+.++.. .
T Consensus 3 lg~~~~~~e~~~~~~~~d-~-------~g~i~~~eF~~~~~~---~---------------------------------- 37 (109)
T 1bu3_A 3 FSGILADADVAAALKACE-A-------ADSFNYKAFFAKVGL---T---------------------------------- 37 (109)
T ss_dssp CSCSSCHHHHHHHHHHTC-S-------TTCCCHHHHHHHHTG---G----------------------------------
T ss_pred ccccCCHHHHHHHHHHhC-C-------CCcCcHHHHHHHHHc---C----------------------------------
Confidence 788999999999999876 2 789999999976521 0
Q ss_pred CCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccC---CCCCCCCCccccccceecCCCCccchhhHHhHhh
Q psy3301 285 TCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLC---PPECPPWTDREMRAMVATNSKGWITMQGFLCYWI 359 (608)
Q Consensus 285 ~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~---~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~ 359 (608)
....+.++.+|+.||+|++|+|+.+||+.+++.+ |....+.+...+++.+|.|++|.|+|+||+..+.
T Consensus 38 -------~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~ 108 (109)
T 1bu3_A 38 -------AKSADDIKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAETKAFLKAGDSDGDGAIGVDEWAALVK 108 (109)
T ss_dssp -------GSCHHHHHHHHHHHCTTCSSSEEHHHHHTHHHHHSTTCCCCCHHHHHHHHHHHCTTCSSEECHHHHHHHHT
T ss_pred -------hhhHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHcccCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHh
Confidence 0114678999999999999999999999999987 5334445577888999999999999999998764
No 394
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2ju0_A
Probab=99.28 E-value=8e-13 Score=124.22 Aligned_cols=137 Identities=16% Similarity=0.197 Sum_probs=103.3
Q ss_pred HHHHHHHhccCC-CCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHHHhcCCCc
Q psy3301 176 ALTRIFKVCDLD-NDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQRGRSH 254 (608)
Q Consensus 176 ~L~~~f~~~D~d-~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~~~~~~~e 254 (608)
.++++|..+|.+ ++|.|+.+|+..+++...+...+.+++..++..++.+ ++|.|++++|..++......
T Consensus 26 ~i~~~~~~fd~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d------~~G~i~~~ef~~~~~~~~~~---- 95 (190)
T 1fpw_A 26 EIQQWHKGFLRDCPSGQLAREDFVKIYKQFFPFGSPEDFANHLFTVFDKD------NNGFIHFEEFITVLSTTSRG---- 95 (190)
T ss_dssp HHHHHHHHHHHHCTTCCEEHHHHHHHHHHHCTTSCCSHHHHHHHHTCCSS------CSSEECHHHHHHHHHHHSCC----
T ss_pred HHHHHHHHHHHHCCCCcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHCCC------CCCcEeHHHHHHHHHHHccC----
Confidence 345556666665 8999999999999987544445667788888888887 79999999999776432100
Q ss_pred chhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhcc----CCCC--
Q psy3301 255 TTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSL----CPPE-- 328 (608)
Q Consensus 255 ~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~----~~~~-- 328 (608)
.+ .+.++.+|+.||.|++|.|+.+|+..++.. .|..
T Consensus 96 -----------------------------------~~---~~~~~~~f~~~D~d~~G~i~~~ef~~~~~~~~~~~g~~~~ 137 (190)
T 1fpw_A 96 -----------------------------------TL---EEKLSWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMVT 137 (190)
T ss_dssp -----------------------------------CS---THHHHHHHHHHCSSCSSEEEHHHHHHHHHHHHTTSCSTTS
T ss_pred -----------------------------------Cc---HHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHHHhccccC
Confidence 00 256788999999999999999999999876 3411
Q ss_pred ------CCCCCccccccceecCCCCccchhhHHhHhhh
Q psy3301 329 ------CPPWTDREMRAMVATNSKGWITMQGFLCYWIL 360 (608)
Q Consensus 329 ------~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~ 360 (608)
....+...+++.+|.|++|.|+++||+..+.-
T Consensus 138 ~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~~ 175 (190)
T 1fpw_A 138 LNEDEATPEMRVKKIFKLMDKNEDGYITLDEFREGSKV 175 (190)
T ss_dssp SSCCCCCHHHHHHHHHHHHTTTCSSEEEHHHHHHHHHS
T ss_pred cccccchHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHh
Confidence 11122567788899999999999999997654
No 395
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.27 E-value=2.2e-11 Score=133.11 Aligned_cols=116 Identities=11% Similarity=0.059 Sum_probs=85.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCC-----------------cCC--CCCcceEecC---ccCCCceeEEEEeCCC
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPE-----------------LVP--SKAEEITIPP---DVTPEMVPTHIVDYSE 66 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~-----------------~~~--~~~~~~~i~~---~~~~~~~~~~i~Dt~G 66 (608)
+..+|+|+|..++|||||..+|+...-.. ... .....++|.. .+.+.++.++|+||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 109 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG 109 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence 45789999999999999999997322110 000 0001123322 2456788999999999
Q ss_pred CCCChHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCC
Q psy3301 67 VDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDY 130 (608)
Q Consensus 67 ~~~~~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 130 (608)
+.+|.......++-+|++|+|+|+...-.-+... .|....+ .++|+++++||+|....
T Consensus 110 HvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~-v~~~a~~-----~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 110 HQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRK-LMDVCRM-----RATPVMTFVNKMDREAL 167 (548)
T ss_dssp GGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHH-HHHHHHH-----TTCCEEEEEECTTSCCC
T ss_pred cHHHHHHHHHHHHhcCceEEEeecCCCcccccHH-HHHHHHH-----hCCceEEEEecccchhc
Confidence 9999999999999999999999999886666655 5655333 58999999999998654
No 396
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.26 E-value=2.9e-12 Score=118.77 Aligned_cols=133 Identities=13% Similarity=0.037 Sum_probs=79.8
Q ss_pred ceEEEEEEccCCCchHHHHHHHhcCCCCCCC-CCCCCCCcCCCceEecc-----eEeCCcceeEeeee--------cccc
Q psy3301 408 NVYVCHVIGNRSTGKTALCQSILRKHHDSSK-TSITSPVECDPPYTINT-----TTVYGQEKYLVLKE--------ILVR 473 (608)
Q Consensus 408 ~~~k~~viG~~gvGKTsll~~f~~~~~~~~~-~~t~~~~~~~~~~~i~~-----~~v~Gqe~~~~l~~--------~~~~ 473 (608)
..+||+|+|++|||||||++++++..+.... .+..+.+.+...+.+++ ++.+|++++....+ .+++
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIE 82 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHH
Confidence 3479999999999999999999987653211 11222211123333443 33488765421110 1122
Q ss_pred c------ccccCCCCcccccc-------cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCC
Q psy3301 474 D------EQLPVLLPVDVDCD-------KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANN 538 (608)
Q Consensus 474 ~------v~d~~l~~~~~~~~-------~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~ 538 (608)
. +|| +++.....+ ......++|+++|+||+||.+... ++++..+.+ ++++| ++.|
T Consensus 83 ~ad~~i~v~D--~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~-~~~~SA~~g~g 152 (172)
T 2gj8_A 83 QADRVLFMVD--GTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHA-LIRLSARTGEG 152 (172)
T ss_dssp TCSEEEEEEE--TTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEE-EEECCTTTCTT
T ss_pred hCCEEEEEEE--CCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCc-eEEEeCCCCCC
Confidence 2 677 555431111 111235799999999999854221 122233443 78899 8999
Q ss_pred HHHHHHHHHHHH
Q psy3301 539 DREVFVKLATMA 550 (608)
Q Consensus 539 v~e~F~~l~~~a 550 (608)
++++|..|++.+
T Consensus 153 v~~l~~~l~~~~ 164 (172)
T 2gj8_A 153 VDVLRNHLKQSM 164 (172)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999999999875
No 397
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.26 E-value=7.6e-12 Score=129.39 Aligned_cols=134 Identities=14% Similarity=0.046 Sum_probs=83.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCC------CC-CcCCCCC--------------------cceEe------------c
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEE------FP-ELVPSKA--------------------EEITI------------P 49 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~------~~-~~~~~~~--------------------~~~~i------------~ 49 (608)
....|+|+|.+|||||||+|+|++.. .. ....+.. +...+ .
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~t 152 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVT 152 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------C
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccch
Confidence 36789999999999999999999621 00 0011100 00000 0
Q ss_pred C-------ccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEE
Q psy3301 50 P-------DVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVG 122 (608)
Q Consensus 50 ~-------~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~ 122 (608)
. .+...+..+.++||+|..... ......+|++++|+|++++...+.+. .. ....|.++|+
T Consensus 153 r~~~~~~~~~~~~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i~----~~------il~~~~ivVl 219 (349)
T 2www_A 153 RTTNEAILLCEGAGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGIK----RG------IIEMADLVAV 219 (349)
T ss_dssp TTHHHHHHHHHHTTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC----------------------CCSCSEEEE
T ss_pred HHHHHHHHhhccCCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHhH----HH------HHhcCCEEEE
Confidence 0 012346789999999964332 33467999999999988764433222 01 1245889999
Q ss_pred eCcCCCCC------------------------CC--cccCcccCcCHHHHHHHHHHHHh
Q psy3301 123 NKVDLVDY------------------------ST--VESSAKTLKNISEMFYYAQKAVL 155 (608)
Q Consensus 123 nK~Dl~~~------------------------~~--~e~SAk~~~~i~~lf~~l~~~i~ 155 (608)
||+|+... .. +.+||++|.|++++++++.+.+.
T Consensus 220 NK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 220 TKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp CCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred eeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 99998521 11 78999999999999999988763
No 398
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus} SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Probab=99.26 E-value=1.5e-12 Score=110.69 Aligned_cols=103 Identities=15% Similarity=0.161 Sum_probs=82.4
Q ss_pred cCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHHHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCC
Q psy3301 205 FDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPA 284 (608)
Q Consensus 205 ~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~ 284 (608)
++..+++++++.++..++ . +|.|+|++|+.++..
T Consensus 2 l~~~~t~~e~~~~~~~~d-~-------~g~i~~~eF~~~~~~-------------------------------------- 35 (108)
T 1rro_A 2 ITDILSAEDIAAALQECQ-D-------PDTFEPQKFFQTSGL-------------------------------------- 35 (108)
T ss_dssp GGGTSCHHHHHHHHHHTC-S-------TTCCCHHHHHHHHSG--------------------------------------
T ss_pred ccccCCHHHHHHHHHHcc-C-------CCCcCHHHHHHHHhc--------------------------------------
Confidence 466789999999998875 2 789999999976421
Q ss_pred CCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccC---CCCCCCCCccccccceecCCCCccchhhHHhHhh
Q psy3301 285 TCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLC---PPECPPWTDREMRAMVATNSKGWITMQGFLCYWI 359 (608)
Q Consensus 285 ~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~---~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~ 359 (608)
+....+.++.+|+.||+|++|+|+.+||+.++..+ |....+.+...+++.+|.|++|.|+|+||+..+.
T Consensus 36 ------~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~ 107 (108)
T 1rro_A 36 ------SKMSASQVKDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESETKSLMDAADNDGDGKIGADEFQEMVH 107 (108)
T ss_dssp ------GGSCHHHHHHHHHHHCTTCSSEECTHHHHTGGGGTCTTSCCCCHHHHHHHHHHHCCSSSSSEEHHHHHHHHT
T ss_pred ------CcccHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHHhhccCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHc
Confidence 01114678999999999999999999999999988 3223334467888999999999999999998763
No 399
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A
Probab=99.24 E-value=8.7e-13 Score=112.25 Aligned_cols=103 Identities=15% Similarity=0.206 Sum_probs=82.7
Q ss_pred cCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHHHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCC
Q psy3301 205 FDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPA 284 (608)
Q Consensus 205 ~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~ 284 (608)
+|..+++++++.+++.++ . +|.|+|++|+.++..
T Consensus 2 lg~~~t~~e~~~~~~~~d-~-------~g~i~~~eF~~~~~~-------------------------------------- 35 (109)
T 1rwy_A 2 MTDLLSAEDIKKAIGAFT-A-------ADSFDHKKFFQMVGL-------------------------------------- 35 (109)
T ss_dssp HHHHSCHHHHHHHHHTTC-S-------TTCCCHHHHHHHHTG--------------------------------------
T ss_pred CCCcCCHHHHHHHHHHcC-C-------CCcEeHHHHHHHHhc--------------------------------------
Confidence 466788999999988875 2 789999999977521
Q ss_pred CCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccC---CCCCCCCCccccccceecCCCCccchhhHHhHhh
Q psy3301 285 TCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLC---PPECPPWTDREMRAMVATNSKGWITMQGFLCYWI 359 (608)
Q Consensus 285 ~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~---~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~ 359 (608)
+....+.++.+|+.||+|++|+|+.+||+.++..+ |....+.+...+++.+|.|++|.|+|+||+..+.
T Consensus 36 ------~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~ 107 (109)
T 1rwy_A 36 ------KKKSADDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVEEFSTLVA 107 (109)
T ss_dssp ------GGSCHHHHHHHHHHHSTTCSSEECHHHHHTHHHHHCTTCCCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHH
T ss_pred ------CcchHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 01114678999999999999999999999999987 4223334567888999999999999999998764
No 400
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.24 E-value=2e-12 Score=129.22 Aligned_cols=141 Identities=11% Similarity=0.051 Sum_probs=93.6
Q ss_pred eEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCce-----EecceEeCCcceeEe------eeecccc--c-
Q psy3301 409 VYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPY-----TINTTTVYGQEKYLV------LKEILVR--D- 474 (608)
Q Consensus 409 ~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~-----~i~~~~v~Gqe~~~~------l~~~~~~--~- 474 (608)
.++++++|++|||||||++++++..+.....++.+.+.....+ .+.-++.+|+..|.. +...++. .
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNA 82 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccCC
Confidence 5899999999999999999999987643333333331111112 233345588877654 3333331 1
Q ss_pred -----ccccCCCCcccccc---cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHHHH
Q psy3301 475 -----EQLPVLLPVDVDCD---KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREVFV 544 (608)
Q Consensus 475 -----v~d~~l~~~~~~~~---~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~ 544 (608)
++| .++.+.... +......+|+++|+||+|+.+.+.+. .+...+++.++++ ++++| ++.|++++|.
T Consensus 83 d~vi~v~D--~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~-~~~~Sa~~g~gi~~l~~ 158 (271)
T 3k53_A 83 DVIVDIVD--STCLMRNLFLTLELFEMEVKNIILVLNKFDLLKKKGAK-IDIKKMRKELGVP-VIPTNAKKGEGVEELKR 158 (271)
T ss_dssp SEEEEEEE--GGGHHHHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCC-CCHHHHHHHHSSC-EEECBGGGTBTHHHHHH
T ss_pred cEEEEEec--CCcchhhHHHHHHHHhcCCCCEEEEEEChhcCcccccH-HHHHHHHHHcCCc-EEEEEeCCCCCHHHHHH
Confidence 455 443321111 11112339999999999998766553 4589999999986 88999 8999999999
Q ss_pred HHHHHHcCC
Q psy3301 545 KLATMAAFP 553 (608)
Q Consensus 545 ~l~~~a~~p 553 (608)
.+.+.+...
T Consensus 159 ~i~~~~~~~ 167 (271)
T 3k53_A 159 MIALMAEGK 167 (271)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHhcc
Confidence 999987544
No 401
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.24 E-value=1.9e-12 Score=128.04 Aligned_cols=136 Identities=13% Similarity=0.051 Sum_probs=91.7
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceE-----ecceEeCCcceeEe----------eeeccc--
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYT-----INTTTVYGQEKYLV----------LKEILV-- 472 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~-----i~~~~v~Gqe~~~~----------l~~~~~-- 472 (608)
.+|+++|.+|||||||++++++..+.....+..+.+.....+. +.-++++|+..+.. +...+.
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 81 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID 81 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence 4799999999999999999999865433323333211112222 33445589877653 222222
Q ss_pred cc------ccccCCCCccc--ccccccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHH
Q psy3301 473 RD------EQLPVLLPVDV--DCDKYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREV 542 (608)
Q Consensus 473 ~~------v~d~~l~~~~~--~~~~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~ 542 (608)
+. |+| .++.+. ....+....++|+++|+||+|+.+.+.+ ......+++.++++ ++++| ++.|++++
T Consensus 82 ~~~d~vi~VvD--as~~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~-~~~~~~l~~~lg~~-vi~~SA~~g~gi~el 157 (256)
T 3iby_A 82 LEYDCIINVID--ACHLERHLYLTSQLFELGKPVVVALNMMDIAEHRGI-SIDTEKLESLLGCS-VIPIQAHKNIGIPAL 157 (256)
T ss_dssp SCCSEEEEEEE--GGGHHHHHHHHHHHTTSCSCEEEEEECHHHHHHTTC-EECHHHHHHHHCSC-EEECBGGGTBSHHHH
T ss_pred CCCCEEEEEee--CCCchhHHHHHHHHHHcCCCEEEEEEChhcCCcCCc-HHHHHHHHHHcCCC-EEEEECCCCCCHHHH
Confidence 11 556 444331 1123444568999999999999765544 34577899999986 88999 89999999
Q ss_pred HHHHHHH
Q psy3301 543 FVKLATM 549 (608)
Q Consensus 543 F~~l~~~ 549 (608)
|..|.+.
T Consensus 158 ~~~i~~~ 164 (256)
T 3iby_A 158 QQSLLHC 164 (256)
T ss_dssp HHHHHTC
T ss_pred HHHHHhh
Confidence 9999987
No 402
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.22 E-value=2.2e-12 Score=135.43 Aligned_cols=83 Identities=14% Similarity=0.205 Sum_probs=46.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCC-CcCCCCCcceEecC----------------------ccCC-CceeEEEEeCCC
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPP----------------------DVTP-EMVPTHIVDYSE 66 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~-~~~~~~~~~~~i~~----------------------~~~~-~~~~~~i~Dt~G 66 (608)
+||+|+|.+|||||||+|+|++.... .+++.++....... .+.. ..+++.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999998732 12332221111110 0111 147899999999
Q ss_pred CCCC----hHHHH---HHHHhcCcEEEEEEcCCh
Q psy3301 67 VDQT----VDELT---EEIQKAHVICLVYSVVDD 93 (608)
Q Consensus 67 ~~~~----~~~~~---~~~~~ad~iilV~d~~~~ 93 (608)
.... ..... ..++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 7542 12222 236899999999999875
No 403
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A
Probab=99.21 E-value=1.3e-12 Score=144.62 Aligned_cols=132 Identities=14% Similarity=0.174 Sum_probs=57.4
Q ss_pred HHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHHHhcCCC
Q psy3301 174 IKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQRGRS 253 (608)
Q Consensus 174 ~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~~~~~~~ 253 (608)
...++++|..+|.|+||.|+.+||..+++. +|..+++++++.+++.+|.+ ++|.|+|+||+.++.....
T Consensus 10 e~~l~~~F~~fD~d~dG~Is~~El~~~l~~-lg~~~s~~el~~lf~~~D~d------~~G~I~f~EF~~~~~~l~~---- 78 (624)
T 1djx_A 10 QHWIHSCLRKADKNKDNKMNFKELKDFLKE-LNIQVDDGYARKIFRECDHS------QTDSLEDEEIETFYKMLTQ---- 78 (624)
T ss_dssp -----------------------------------------------------------------CTTHHHHHHTC----
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHH-cCCCCCHHHHHHHHHHhCCC------CCCeEeHHHHHHHHHHhcc----
Confidence 346899999999999999999999999987 79999999999999999998 8999999999988754211
Q ss_pred cchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccC-CCC-CCC
Q psy3301 254 HTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLC-PPE-CPP 331 (608)
Q Consensus 254 e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~-~~~-~~~ 331 (608)
.+.++++|+.||+| +|+|+.+||+.++... |+. ...
T Consensus 79 -----------------------------------------~~el~~aF~~fD~~-~G~Is~~EL~~fL~~~qge~~ls~ 116 (624)
T 1djx_A 79 -----------------------------------------RAEIDRAFEEAAGS-AETLSVERLVTFLQHQQREEEAGP 116 (624)
T ss_dssp -----------------------------------------CHHHHHHHHHHHTT-SSSEEHHHHHHHHHHTSCCSSCSH
T ss_pred -----------------------------------------HHHHHHHHHHhcCC-CCeecHHHHHHHHHHHhCCCCCCH
Confidence 14588999999986 9999999999999865 432 333
Q ss_pred CCccccccceecC----CCCccchhhHHhHh
Q psy3301 332 WTDREMRAMVATN----SKGWITMQGFLCYW 358 (608)
Q Consensus 332 ~~~~~~~~~~d~~----~~g~i~~~ef~~~w 358 (608)
.++.++++.+|.| ++|.|+|+||+.+.
T Consensus 117 ee~~~ii~~~d~d~~~~~dG~Is~deF~~~L 147 (624)
T 1djx_A 117 ALALSLIERYEPSETAKAQRQMTKDGFLMYL 147 (624)
T ss_dssp HHHHHHHHHHCCCHHHHHTTEECHHHHHHHH
T ss_pred HHHHHHHHHhCCChhhccCCCCCHHHHHHHh
Confidence 4467888888887 79999999998764
No 404
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Probab=99.21 E-value=1.3e-12 Score=110.97 Aligned_cols=103 Identities=14% Similarity=0.167 Sum_probs=82.5
Q ss_pred cCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHHHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCC
Q psy3301 205 FDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPA 284 (608)
Q Consensus 205 ~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~ 284 (608)
++..+++++++.++..++ . +|.|+|++|+.++.. . +
T Consensus 2 l~~~~~~~e~~~l~~~~d-~-------~g~i~~~eF~~~~~~---~---~------------------------------ 37 (108)
T 2kyc_A 2 LTDILSPSDIAAALRDCQ-A-------PDSFSPKKFFQISGM---S---K------------------------------ 37 (108)
T ss_dssp TTSSSCHHHHHHHHTTSC-S-------TTTCCHHHHHHHHTC---T---T------------------------------
T ss_pred ccccCCHHHHHHHHHHcC-C-------CCcCCHHHHHHHHhh---C---c------------------------------
Confidence 567788999988888765 2 789999999977521 0 0
Q ss_pred CCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccC---CCCCCCCCccccccceecCCCCccchhhHHhHhh
Q psy3301 285 TCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLC---PPECPPWTDREMRAMVATNSKGWITMQGFLCYWI 359 (608)
Q Consensus 285 ~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~---~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~ 359 (608)
...+.++.+|+.||+|++|+|+.+||+.++... |....+.+...+++.+|.|++|.|+|+||+..+.
T Consensus 38 --------~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~ 107 (108)
T 2kyc_A 38 --------KSSSQLKEIFRILDNDQSGFIEEDELKYFLQRFESGARVLTASETKTFLAAADHDGDGKIGAEEFQEMVQ 107 (108)
T ss_dssp --------CCSSSHHHHCSSSCSCCSSCCCGGGTTTSHHHHSSSCCCCCTTTTHHHHTTTCCSSSSCCCSSHHHHHHH
T ss_pred --------ccHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHHhhccCCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHh
Confidence 002347888999999999999999999999987 5445556688999999999999999999998763
No 405
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.21 E-value=1.4e-11 Score=141.39 Aligned_cols=114 Identities=18% Similarity=0.125 Sum_probs=84.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCc--------CCC-----CCcceEec-----Cc--------------cCCCc
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPEL--------VPS-----KAEEITIP-----PD--------------VTPEM 56 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~--------~~~-----~~~~~~i~-----~~--------------~~~~~ 56 (608)
+.+||+|+|+.|+|||||+++|+....... ... .....++. .. .+..+
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 457999999999999999999987521100 000 00001111 11 23347
Q ss_pred eeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCC
Q psy3301 57 VPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLV 128 (608)
Q Consensus 57 ~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 128 (608)
+.++||||||+.+|...+..+++.+|++|+|+|+++..+++... .|..... .++|+++|+||+|+.
T Consensus 98 ~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~-~~~~~~~-----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTET-VLRQALG-----ERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHH-HHHHHHH-----TTCEEEEEEECHHHH
T ss_pred ceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHH-----cCCCeEEEEECCCcc
Confidence 88999999999999999999999999999999999998888765 5655433 378999999999975
No 406
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.21 E-value=4.8e-12 Score=122.24 Aligned_cols=146 Identities=8% Similarity=0.002 Sum_probs=85.1
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCc--------eEecceEeCC----------cceeEeee
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPP--------YTINTTTVYG----------QEKYLVLK 468 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~--------~~i~~~~v~G----------qe~~~~l~ 468 (608)
...++|+|+|.+|||||||+++++++.+......+++.+..... ..+.-++.+| ++.|..+.
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 106 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL 106 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence 35689999999999999999999998742222223333100011 2222344577 44444443
Q ss_pred eccccc---------ccccCCCCcc----cccccccCCCCCcEEEEEeCCCCCcchhcc--cccHHHHHHHc------CC
Q psy3301 469 EILVRD---------EQLPVLLPVD----VDCDKYFSTSKIPVMLVAGKSDMPRARQDY--LMQPDIFCETH------KL 527 (608)
Q Consensus 469 ~~~~~~---------v~d~~l~~~~----~~~~~~~~~~~~p~ilVgnK~DL~~~~~~~--~~~~~~~~~~~------~~ 527 (608)
..+++. ++| .++.. ....++....++|+++|+||+|+...++.. ..+..+....+ ..
T Consensus 107 ~~~~~~~~~~d~vi~v~d--~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 184 (223)
T 4dhe_A 107 SSYLQTRPQLCGMILMMD--ARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGK 184 (223)
T ss_dssp HHHHHHCTTEEEEEEEEE--TTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSC
T ss_pred HHHHhcCcCcCEEEEEEe--CCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCC
Confidence 333322 455 33321 111133334679999999999997654421 12222333332 33
Q ss_pred CCceEEc--cCCCHHHHHHHHHHHHcCCC
Q psy3301 528 SPAHSFS--AANNDREVFVKLATMAAFPR 554 (608)
Q Consensus 528 ~~~~~~S--~~~~v~e~F~~l~~~a~~p~ 554 (608)
.+++++| ++.|++++|..|.+.+..+.
T Consensus 185 ~~~~~~SA~~g~gv~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 185 LTVQLFSALKRTGLDDAHALIESWLRPAA 213 (223)
T ss_dssp EEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred CeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence 3478899 89999999999999885543
No 407
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4
Probab=99.20 E-value=3.1e-12 Score=108.81 Aligned_cols=103 Identities=17% Similarity=0.209 Sum_probs=82.9
Q ss_pred cCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHHHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCC
Q psy3301 205 FDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPA 284 (608)
Q Consensus 205 ~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~ 284 (608)
+|..+++++++++++.++. +|.|+|++|+.++.. .
T Consensus 2 l~~~~s~~ei~~~~~~~d~--------~g~i~~~eF~~~~~~---~---------------------------------- 36 (109)
T 5pal_A 2 MTKVLKADDINKAISAFKD--------PGTFDYKRFFHLVGL---K---------------------------------- 36 (109)
T ss_dssp GGGTSCHHHHHHHHHHTCS--------TTCCCHHHHHHHHTC---T----------------------------------
T ss_pred CCCcCCHHHHHHHHHHhCC--------CCcCcHHHHHHHHhh---c----------------------------------
Confidence 4667889999999888753 578999999977531 0
Q ss_pred CCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccC---CCCCCCCCccccccceecCCCCccchhhHHhHhh
Q psy3301 285 TCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLC---PPECPPWTDREMRAMVATNSKGWITMQGFLCYWI 359 (608)
Q Consensus 285 ~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~---~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~ 359 (608)
....+.++.+|+.||+|++|+|+.+||+.+++.+ |....+.+...+++.+|.|++|.|+|+||+..+.
T Consensus 37 -------~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~ 107 (109)
T 5pal_A 37 -------GKTDAQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAGDSDHDGKIGADEFAKMVA 107 (109)
T ss_dssp -------TCCHHHHHHHHHHHCTTCSSEECHHHHHTHHHHHCTTCCCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHH
T ss_pred -------cCcHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 0114678999999999999999999999999887 5334445567888999999999999999998764
No 408
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.20 E-value=8.5e-12 Score=131.30 Aligned_cols=141 Identities=14% Similarity=0.186 Sum_probs=71.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHcCCCCC-cC-------CCCCcceEecCccC--CCceeEEEEeCCCCCCCh-------H
Q psy3301 10 NVRILLLGDRHVGKTSLILSLVSEEFPE-LV-------PSKAEEITIPPDVT--PEMVPTHIVDYSEVDQTV-------D 72 (608)
Q Consensus 10 ~~kI~lvG~~~vGKTSLi~~l~~~~~~~-~~-------~~~~~~~~i~~~~~--~~~~~~~i~Dt~G~~~~~-------~ 72 (608)
.++|+|+|++|||||||+++|++..+.. .. .++.....+...+. .....+.+||++|..... .
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~ 110 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 110 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHH
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHH
Confidence 4689999999999999999999987632 11 11111112222222 223478999999986542 1
Q ss_pred HH-------HHH-----------HHhcCcEEEEEEcCCh-hhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCC-
Q psy3301 73 EL-------TEE-----------IQKAHVICLVYSVVDD-ASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST- 132 (608)
Q Consensus 73 ~~-------~~~-----------~~~ad~iilV~d~~~~-~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~- 132 (608)
.. ..+ +.++++.+++|..+.. .++......|+..+. .++|+|+|+||+|+.....
T Consensus 111 i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~-----~~v~iIlVinK~Dll~~~ev 185 (418)
T 2qag_C 111 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH-----EKVNIIPLIAKADTLTPEEC 185 (418)
T ss_dssp HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT-----TTSEEEEEEESTTSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh-----ccCcEEEEEEcccCccHHHH
Confidence 10 111 2345666666665543 455555445776664 2789999999999875321
Q ss_pred ------------------cccCcccCcCHHHHHHHHHHHHh
Q psy3301 133 ------------------VESSAKTLKNISEMFYYAQKAVL 155 (608)
Q Consensus 133 ------------------~e~SAk~~~~i~~lf~~l~~~i~ 155 (608)
+++||+++.+++++|..+...+.
T Consensus 186 ~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iP 226 (418)
T 2qag_C 186 QQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 226 (418)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCC-----------------CC
T ss_pred HHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence 88999999999998877766553
No 409
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.19 E-value=1.4e-11 Score=127.07 Aligned_cols=72 Identities=7% Similarity=0.034 Sum_probs=60.3
Q ss_pred CceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEcC----------ChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeC
Q psy3301 55 EMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSVV----------DDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNK 124 (608)
Q Consensus 55 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~----------~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK 124 (608)
..+.+.||||+|+++++..+..++++++++|+|||++ +..+++... .|...+.......++|+||||||
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~-~~~~~i~~~~~~~~~piiLvgNK 259 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETK-ELFDWVLKQPCFEKTSFMLFLNK 259 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHH-HHHHHHHTCGGGSSCEEEEEEEC
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHH-HHHHHHHhccccCCCeEEEEEEC
Confidence 5688999999999999999999999999999999998 788999988 56666653223468999999999
Q ss_pred cCC
Q psy3301 125 VDL 127 (608)
Q Consensus 125 ~Dl 127 (608)
+|+
T Consensus 260 ~DL 262 (354)
T 2xtz_A 260 FDI 262 (354)
T ss_dssp HHH
T ss_pred cch
Confidence 997
No 410
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.19 E-value=1.4e-12 Score=130.49 Aligned_cols=141 Identities=10% Similarity=0.076 Sum_probs=91.5
Q ss_pred eEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCC-----ceEecceEeCCcceeEeeeec----------cc-
Q psy3301 409 VYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDP-----PYTINTTTVYGQEKYLVLKEI----------LV- 472 (608)
Q Consensus 409 ~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~-----~~~i~~~~v~Gqe~~~~l~~~----------~~- 472 (608)
.++|+++|.+|||||||++++++..+.....+..+.+.... ...+.-++++|++.+..+... +.
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~ 82 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYIL 82 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHHh
Confidence 37999999999999999999999875433322222211111 122333556898877643221 11
Q ss_pred -cc------ccccCCCCccccc--ccccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHH
Q psy3301 473 -RD------EQLPVLLPVDVDC--DKYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDRE 541 (608)
Q Consensus 473 -~~------v~d~~l~~~~~~~--~~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e 541 (608)
+. ++| .++.+... ..+....++|+++|+||+|+.+.+.. ....+++++.++++ ++++| ++.|+++
T Consensus 83 ~~~~d~ii~VvD--~~~~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~l~~~lg~~-~i~~SA~~g~gi~e 158 (274)
T 3i8s_A 83 SGDADLLINVVD--ASNLERNLYLTLQLLELGIPCIVALNMLDIAEKQNI-RIEIDALSARLGCP-VIPLVSTRGRGIEA 158 (274)
T ss_dssp HTCCSEEEEEEE--GGGHHHHHHHHHHHHHHTCCEEEEEECHHHHHHTTE-EECHHHHHHHHTSC-EEECCCGGGHHHHH
T ss_pred hcCCCEEEEEec--CCChHHHHHHHHHHHhcCCCEEEEEECccchhhhhH-HHHHHHHHHhcCCC-EEEEEcCCCCCHHH
Confidence 11 455 44333111 12222357999999999999765544 45678999999986 89999 8999999
Q ss_pred HHHHHHHHHcCC
Q psy3301 542 VFVKLATMAAFP 553 (608)
Q Consensus 542 ~F~~l~~~a~~p 553 (608)
+|..|++.+..+
T Consensus 159 l~~~i~~~~~~~ 170 (274)
T 3i8s_A 159 LKLAIDRYKANE 170 (274)
T ss_dssp HHHHHHTCCCCC
T ss_pred HHHHHHHHHhcC
Confidence 999998866433
No 411
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=99.18 E-value=1.4e-11 Score=103.04 Aligned_cols=71 Identities=14% Similarity=0.221 Sum_probs=65.3
Q ss_pred ccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCCCCCCCCCccccccceecCCCCccchhhHHhH
Q psy3301 287 TAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPECPPWTDREMRAMVATNSKGWITMQGFLCY 357 (608)
Q Consensus 287 ~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 357 (608)
..+|++...+.|+++|+.||+|++|+|+.+||+.+++.+|......++.++++.+|.|++|.|+|+||++.
T Consensus 27 ~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~~~D~d~dG~I~~~EF~~~ 97 (100)
T 2lv7_A 27 PVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQRLDMDGDGQVDFEEFVTL 97 (100)
T ss_dssp CCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHHHHCSSCSSSBCHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHCCCCCCeEeHHHHHHH
Confidence 45789999999999999999999999999999999999986566677899999999999999999999975
No 412
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.18 E-value=1.5e-11 Score=126.92 Aligned_cols=102 Identities=15% Similarity=0.090 Sum_probs=84.2
Q ss_pred CCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEcCC----------hhhHHHHHHhHHHHHhhhccCCCCcEEEEEe
Q psy3301 54 PEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSVVD----------DASIDRLSSHWLPFLRNCLVDTCLPIVLVGN 123 (608)
Q Consensus 54 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~~----------~~s~~~~~~~~~~~i~~~~~~~~~piilv~n 123 (608)
..++.+.+|||+|++.++..+..++++++++|+|||+++ ..+++... .|+..+.......++|+|||+|
T Consensus 190 ~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~-~~~~~i~~~~~~~~~piiLv~N 268 (353)
T 1cip_A 190 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESM-KLFDSICNNKWFTDTSIILFLN 268 (353)
T ss_dssp ETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHH-HHHHHHHTCGGGTTSEEEEEEE
T ss_pred eCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHH-HHHHHHHcCccccCCcEEEEEE
Confidence 347889999999999999999999999999999999999 56788887 5666665322346899999999
Q ss_pred CcCCCCC----------------------------------------CC---cccCcccCcCHHHHHHHHHHHHhC
Q psy3301 124 KVDLVDY----------------------------------------ST---VESSAKTLKNISEMFYYAQKAVLH 156 (608)
Q Consensus 124 K~Dl~~~----------------------------------------~~---~e~SAk~~~~i~~lf~~l~~~i~~ 156 (608)
|+|+... .. ++|||+++.||.++|.++.+.+..
T Consensus 269 K~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~ 344 (353)
T 1cip_A 269 KKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK 344 (353)
T ss_dssp CHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred CcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHH
Confidence 9998410 11 689999999999999999888753
No 413
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.17 E-value=5.2e-11 Score=121.10 Aligned_cols=143 Identities=15% Similarity=0.114 Sum_probs=94.8
Q ss_pred CCceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCC-------C-ceEecceEeCCcceeE----------ee
Q psy3301 406 TRNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECD-------P-PYTINTTTVYGQEKYL----------VL 467 (608)
Q Consensus 406 ~r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~-------~-~~~i~~~~v~Gqe~~~----------~l 467 (608)
+...-.|.++|.+|||||||++++++..+..... .++.+... . .+.+.-++.+|+.++. ..
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~-~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~ 85 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISP-KAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEI 85 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCS-SSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCccccCC-CCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHH
Confidence 4456789999999999999999999998764332 22221111 1 3344445668876543 22
Q ss_pred eeccccc------ccccCCCCcc----ccc-ccccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcC-CCCceEEc-
Q psy3301 468 KEILVRD------EQLPVLLPVD----VDC-DKYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHK-LSPAHSFS- 534 (608)
Q Consensus 468 ~~~~~~~------v~d~~l~~~~----~~~-~~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~-~~~~~~~S- 534 (608)
...+++. |+| .++.. ... -+.....++|+++|+||+|+...++.......++++.++ ..+.+++|
T Consensus 86 ~~~~l~~aD~il~VvD--~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA 163 (308)
T 3iev_A 86 AKQSLEEADVILFMID--ATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISA 163 (308)
T ss_dssp HHHHHHHCSEEEEEEE--TTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBT
T ss_pred HHHHhhcCCEEEEEEe--CCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeC
Confidence 2222222 566 44432 111 122233579999999999997445555677788888884 45588999
Q ss_pred -cCCCHHHHHHHHHHHHc
Q psy3301 535 -AANNDREVFVKLATMAA 551 (608)
Q Consensus 535 -~~~~v~e~F~~l~~~a~ 551 (608)
++.|++++|..|++.+.
T Consensus 164 ~~g~gv~~L~~~l~~~l~ 181 (308)
T 3iev_A 164 LKGANLDELVKTILKYLP 181 (308)
T ss_dssp TTTBSHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHhCc
Confidence 89999999999999774
No 414
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+) requirement, hydrolase chimera; 2.80A {Rattus norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Probab=99.17 E-value=5.9e-12 Score=146.57 Aligned_cols=131 Identities=21% Similarity=0.236 Sum_probs=103.5
Q ss_pred HHHHHHHHHhccCCCCCccCHHHHHHHhhcccC-------CCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHH
Q psy3301 174 IKALTRIFKVCDLDNDNLLSDKELNAFQRRCFD-------APLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNL 246 (608)
Q Consensus 174 ~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g-------~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~ 246 (608)
.+.|+++|..+| |++|.|+.+||..+++.+.. ..++.++++.+++.++.+ ++|.|+|+||+.++..
T Consensus 533 ~~~l~~~F~~~D-~~dG~Is~~El~~~L~~~~~~~~~~~~~~~s~~~~~~l~~~~D~d------~~G~I~~~EF~~~~~~ 605 (900)
T 1qxp_A 533 DDNFKTLFSKLA-GDDMEISVKELQTILNRIISKHKDLRTNGFSLESCRSMVNLMDRD------GNGKLGLVEFNILWNR 605 (900)
T ss_dssp --------CCCC-CSSSSCCCSCTTTTTCC---------CCCCCHHHHHHHHHHHCC--------CCCCCSSSHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCcCCHHHHHHHHHHhhcccccccCCCCCHHHHHHHHHHhCCC------CCCcCCHHHHHHHHHH
Confidence 778999999999 99999999999999987432 278999999999999988 8999999999987643
Q ss_pred HHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCC
Q psy3301 247 FMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCP 326 (608)
Q Consensus 247 ~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~ 326 (608)
.+.++.+|+.||+|++|.|+.+||+.++..+|
T Consensus 606 ------------------------------------------------~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g 637 (900)
T 1qxp_A 606 ------------------------------------------------IRNYLTIFRKFDLDKSGSMSAYEMRMAIEAAG 637 (900)
T ss_dssp ------------------------------------------------HHHHHHHHGGGCTTCCSCCBHHHHHHHHHHTT
T ss_pred ------------------------------------------------HHHHHHHHHhhCCCCCCeECHHHHHHHHHHhC
Confidence 25688899999999999999999999999987
Q ss_pred CCCCCCCccccccceecCCCCccchhhHHhHhhh
Q psy3301 327 PECPPWTDREMRAMVATNSKGWITMQGFLCYWIL 360 (608)
Q Consensus 327 ~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~ 360 (608)
......+...++..+| |++|.|+|+||+..+.-
T Consensus 638 ~~l~~~~~~~l~~~~d-d~dg~I~~~eF~~~~~~ 670 (900)
T 1qxp_A 638 FKLPCQLHQVIVARFA-DDELIIDFDNFVRCLVR 670 (900)
T ss_dssp EECCHHHHHHHHHHTS-CSSSBCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC-CCCCeEcHHHHHHHHHH
Confidence 4344445678888889 99999999999998764
No 415
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana}
Probab=99.17 E-value=3.9e-12 Score=112.92 Aligned_cols=101 Identities=9% Similarity=-0.015 Sum_probs=63.8
Q ss_pred HHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHHHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHh
Q psy3301 214 LEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDK 293 (608)
Q Consensus 214 l~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~ 293 (608)
.+++++.++.+ ++|.|+|++|+.++..... ...
T Consensus 5 ~~~l~~~~D~d------~~G~I~~~EF~~~~~~~~~-----------------------------------------~~~ 37 (135)
T 3h4s_E 5 EKSMLLETTST------TKMETKYEDMLPVMAEKMD-----------------------------------------VEE 37 (135)
T ss_dssp --------------------CCCC-----------C-----------------------------------------HHH
T ss_pred HHHHHHHHcCC------CCCcEeHHHHHHHHHHHcc-----------------------------------------ccc
Confidence 45677888888 7999999999977543211 011
Q ss_pred HHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCC-CCCCCCCccccccceecCCCCccchhhHHhHhhhh
Q psy3301 294 GQQFLTTLFYRFDKDGDGALSPEEQARLFSLCP-PECPPWTDREMRAMVATNSKGWITMQGFLCYWILT 361 (608)
Q Consensus 294 ~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~~ 361 (608)
..+.++.+|+.||+|++|+|+.+||+.++..+| ......+...+++.+|.|++|.|+|+||+..+.-.
T Consensus 38 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~~~~~ 106 (135)
T 3h4s_E 38 FVSELCKGFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQGMVREGDLDGDGALNQTEFCVLMVRL 106 (135)
T ss_dssp HHHHHHHHHHHHSBTTTTBBCHHHHHHHGGGGTCCCCCHHHHHHHHHHHCSSCSSSBCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHh
Confidence 256799999999999999999999999999988 24455567889999999999999999999988654
No 416
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=99.16 E-value=1.3e-11 Score=143.61 Aligned_cols=137 Identities=11% Similarity=0.146 Sum_probs=114.5
Q ss_pred ccChHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHH
Q psy3301 167 QELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNL 246 (608)
Q Consensus 167 ~~l~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~ 246 (608)
..+++.....++++|..+|.|++|.|+..|+..+++. +|..++..+++.++..++.+ ++|.|+|++|+.++..
T Consensus 717 ~~l~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~-~g~~~~~~~~~~~~~~~D~d------~dG~I~~~EF~~~~~~ 789 (863)
T 1sjj_A 717 KGISQEQMNEFRASFNHFDRKKTGMMDCEDFRACLIS-MGYNMGEAEFARIMSIVDPN------RMGVVTFQAFIDFMSR 789 (863)
T ss_dssp CCSSHHHHHHHHHHHTTTCSSSSSEEESTTHHHHHHH-HTCCCCTHHHHHHHHHHCTT------SCSEEETTHHHHTHHH
T ss_pred cCCCHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHH-cCCCCCHHHHHHHHHHhCCC------CCCcCcHHHHHHHHHH
Confidence 3456677889999999999999999999999999987 79999999999999999988 8999999999977654
Q ss_pred HHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCC
Q psy3301 247 FMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCP 326 (608)
Q Consensus 247 ~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~ 326 (608)
....... .+.+..+|+.| .|++|+|+.+||+.+++
T Consensus 790 ~~~~~~~-----------------------------------------~~~l~~aF~~~-~d~~G~Is~~El~~~l~--- 824 (863)
T 1sjj_A 790 ETADTDT-----------------------------------------ADQVMASFKIL-AGDKNYITVDELRRELP--- 824 (863)
T ss_dssp HSTTCSS-----------------------------------------SHHHHHHHHGG-GTSSSEEEHHHHHHHSC---
T ss_pred HhcCCCC-----------------------------------------HHHHHHHHHHH-hCCCCcCcHHHHHHHCC---
Confidence 2211100 24578899999 89999999999999985
Q ss_pred CCCCCCCccccccceecC-----CCCccchhhHHhHhh
Q psy3301 327 PECPPWTDREMRAMVATN-----SKGWITMQGFLCYWI 359 (608)
Q Consensus 327 ~~~~~~~~~~~~~~~d~~-----~~g~i~~~ef~~~w~ 359 (608)
+.+.+.++..+|.+ +||.|+|++|+..+.
T Consensus 825 ----~~~~~~l~~~~d~~~~~~~~dg~I~~~eF~~~~~ 858 (863)
T 1sjj_A 825 ----PDQAEYCIARMAPYNGRDAVPGALDYMSFSTALY 858 (863)
T ss_dssp ----HHHHHHHHHHSEECCSSCCCTTEEESHHHHHHHS
T ss_pred ----HHHHHHHHHHcchhcCCCCCCCceeHHHHHHHHh
Confidence 33467888888877 699999999998764
No 417
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.16 E-value=2.5e-12 Score=130.33 Aligned_cols=119 Identities=21% Similarity=0.157 Sum_probs=94.2
Q ss_pred HHHHHHHcCCCC-CcCCCCCcceEecCccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEcCChh-hHHHHHHh
Q psy3301 25 SLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSVVDDA-SIDRLSSH 102 (608)
Q Consensus 25 SLi~~l~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~~~~-s~~~~~~~ 102 (608)
+|+.+++.+.|. ..+.++...... ..+...+ .+.+||+ ++++..+...+++++|++|+|||++++. +++.+. .
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~-~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~-~ 106 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG-SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID-K 106 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS-SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH-H
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC-eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH-H
Confidence 688999999887 666666543222 2222222 7899999 8899988899999999999999999997 787776 8
Q ss_pred HHHHHhhhccCCCCcEEEEEeCcCCCCCC----------------C-cccCcccCcCHHHHHHHHHH
Q psy3301 103 WLPFLRNCLVDTCLPIVLVGNKVDLVDYS----------------T-VESSAKTLKNISEMFYYAQK 152 (608)
Q Consensus 103 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~----------------~-~e~SAk~~~~i~~lf~~l~~ 152 (608)
|+..++. .++|++||+||+|+.+.. . ++|||++|.||+++|..+..
T Consensus 107 ~l~~~~~----~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 107 FLVLAEK----NELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHH----CCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 9887763 478999999999997531 1 78999999999999987654
No 418
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.15 E-value=2e-10 Score=128.29 Aligned_cols=140 Identities=19% Similarity=0.198 Sum_probs=92.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCcCCCCCcce----E-------------------------------------
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEI----T------------------------------------- 47 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~~~~~~~~~----~------------------------------------- 47 (608)
.-.+|+|+|++++|||||+|+|++..+-+.-....++. .
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 34699999999999999999999987632111000100 0
Q ss_pred ----------ecCcc-CCCceeEEEEeCCCCCCC-------------hHHHHHHH-HhcCcEEEEEEcCChhhHHHHHHh
Q psy3301 48 ----------IPPDV-TPEMVPTHIVDYSEVDQT-------------VDELTEEI-QKAHVICLVYSVVDDASIDRLSSH 102 (608)
Q Consensus 48 ----------i~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~-~~ad~iilV~d~~~~~s~~~~~~~ 102 (608)
+...+ .+....+.|+||||.... ...+..++ ..+|++++|.|++...+-.... .
T Consensus 130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l-~ 208 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL-K 208 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH-H
T ss_pred CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH-H
Confidence 00000 112335789999996441 12234444 4789999999998753322221 2
Q ss_pred HHHHHhhhccCCCCcEEEEEeCcCCCCCCC--------------------cccCcccCcCHHHHHHHHHHH
Q psy3301 103 WLPFLRNCLVDTCLPIVLVGNKVDLVDYST--------------------VESSAKTLKNISEMFYYAQKA 153 (608)
Q Consensus 103 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------------------~e~SAk~~~~i~~lf~~l~~~ 153 (608)
+...+. ..+.|+|+|.||+|+..... +.+||++|.|++++++.+.+.
T Consensus 209 ll~~L~----~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 209 IAKEVD----PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHHHC----TTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHHHH----hcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 333333 34789999999999874321 779999999999999998874
No 419
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.15 E-value=5.2e-12 Score=121.60 Aligned_cols=133 Identities=12% Similarity=0.108 Sum_probs=82.3
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCC---CCCCCCCCcCCCceEecceEeCCcceeEeeeeccccc---------
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSS---KTSITSPVECDPPYTINTTTVYGQEKYLVLKEILVRD--------- 474 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~---~~~t~~~~~~~~~~~i~~~~v~Gqe~~~~l~~~~~~~--------- 474 (608)
...++|+|+|++|||||||+++++++.+... +.++.+. .+ ..+.+.-++.+|+++|..++..+++.
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~-~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i 87 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-DY-DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLI 87 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEET-TG-GGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEE-Ee-eCceEEEEECCCcHHHHHHHHHHHHhccccCCEEE
Confidence 4568999999999999999999999987652 3333333 11 22344456779999987665555432
Q ss_pred -ccccCCC-Ccc--ccccccc----------CCCCCcEEEEEeCCCCCcchhcc------cccHHHHHHHcCCCCceEEc
Q psy3301 475 -EQLPVLL-PVD--VDCDKYF----------STSKIPVMLVAGKSDMPRARQDY------LMQPDIFCETHKLSPAHSFS 534 (608)
Q Consensus 475 -v~d~~l~-~~~--~~~~~~~----------~~~~~p~ilVgnK~DL~~~~~~~------~~~~~~~~~~~~~~~~~~~S 534 (608)
+|| ++ +.+ ....+++ ...++|+++|+||+|+...+++. ..+..+++...++. ++++|
T Consensus 88 ~v~D--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~S 164 (218)
T 1nrj_B 88 FMVD--STVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKS-LNEVE 164 (218)
T ss_dssp EEEE--TTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHH-HHC--
T ss_pred EEEE--CCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcc-ccccc
Confidence 677 55 333 2222110 34789999999999998765543 45678888887775 78888
Q ss_pred cCCCHHHHHH
Q psy3301 535 AANNDREVFV 544 (608)
Q Consensus 535 ~~~~v~e~F~ 544 (608)
...+.++.+.
T Consensus 165 a~~~~~~~~~ 174 (218)
T 1nrj_B 165 RKINEEDYAE 174 (218)
T ss_dssp ----------
T ss_pred cccccccchh
Confidence 4344444333
No 420
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.14 E-value=1.6e-10 Score=119.53 Aligned_cols=114 Identities=12% Similarity=0.132 Sum_probs=79.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHcCCCCCc-CCCCCcceEecCccCCCceeEEEEeCCCCCCCh-------HHHHHHHHhc
Q psy3301 10 NVRILLLGDRHVGKTSLILSLVSEEFPEL-VPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTV-------DELTEEIQKA 81 (608)
Q Consensus 10 ~~kI~lvG~~~vGKTSLi~~l~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~a 81 (608)
..+|+|+|.||||||||+|+|++...... ++. ++...+...+...+.++.++||||.-... ......++.|
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pf-tT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~a 150 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEF-TTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTC 150 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCS-SCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHC
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCC-ceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhc
Confidence 35899999999999999999999774433 444 45555555566678899999999964321 1234578999
Q ss_pred CcEEEEEEcCChhh-HHHHHHhHHHHHhhh-ccCCCCcEEEEEeCcCCC
Q psy3301 82 HVICLVYSVVDDAS-IDRLSSHWLPFLRNC-LVDTCLPIVLVGNKVDLV 128 (608)
Q Consensus 82 d~iilV~d~~~~~s-~~~~~~~~~~~i~~~-~~~~~~piilv~nK~Dl~ 128 (608)
|++++|.|++++.. ++.+. .++... ......|.+++.||+|..
T Consensus 151 d~il~vvD~~~p~~~~~~i~----~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 151 NLLFIILDVNKPLHHKQIIE----KELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp SEEEEEEETTSHHHHHHHHH----HHHHHTTEEETCCCCCEEEEECSSS
T ss_pred CccccccccCccHHHHHHHH----HHHHHhhHhhccCChhhhhhHhhhh
Confidence 99999999998743 22222 222211 223456888888999864
No 421
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+) requirement, hydrolase chimera; 2.80A {Rattus norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Probab=99.13 E-value=1.7e-10 Score=134.36 Aligned_cols=173 Identities=14% Similarity=0.178 Sum_probs=105.2
Q ss_pred HHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHHHhcCCC
Q psy3301 174 IKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQRGRS 253 (608)
Q Consensus 174 ~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~~~~~~~ 253 (608)
...++++|+.+|.|++|.|+.+|+..+++. +|..++.++++.++..++ + ++|.|+|++|+.++...
T Consensus 606 ~~~l~~~F~~~D~d~~G~Is~~El~~~l~~-~g~~l~~~~~~~l~~~~d-d------~dg~I~~~eF~~~~~~~------ 671 (900)
T 1qxp_A 606 IRNYLTIFRKFDLDKSGSMSAYEMRMAIEA-AGFKLPCQLHQVIVARFA-D------DELIIDFDNFVRCLVRL------ 671 (900)
T ss_dssp HHHHHHHHGGGCTTCCSCCBHHHHHHHHHH-TTEECCHHHHHHHHHHTS-C------SSSBCCHHHHHHHHHHH------
T ss_pred HHHHHHHHHhhCCCCCCeECHHHHHHHHHH-hCCCCCHHHHHHHHHHhC-C------CCCeEcHHHHHHHHHHH------
Confidence 467899999999999999999999999987 799999999999999987 6 68999999999776532
Q ss_pred cchhHHhhhccCCCCc----------------------------------------------------------cccccc
Q psy3301 254 HTTWTVLRKFGYNEDL----------------------------------------------------------QISKEF 275 (608)
Q Consensus 254 e~~w~~lr~f~y~~~l----------------------------------------------------------~~~~~~ 275 (608)
+..+..++.+.-+.+- .++.+-
T Consensus 672 ~~l~~~F~~~D~d~~G~It~~~~efl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~G~Is~~E 751 (900)
T 1qxp_A 672 EILFKIFKQLDPENTGTIQLDLISWLSFSVLGKLAAAIEHHHHHHMHYSNIEANESEEERQFRKLFVQLAGDDMEVSATE 751 (900)
T ss_dssp HHHHHHHHHSCSSCCSCEEEEHHHHHHHTCC--------------CCCCCC--------------CCCCTTCSSCBCHHH
T ss_pred HHHHHHHHhhCCCCCceEEecHHHHHHHhhhccccccccccccccccccCCCCCChHHHHHHHHHHHHhcCCCCccCHHH
Confidence 1222233333322221 111111
Q ss_pred cCCCCCC-------------------------CCCCccccCHhHH-------HHHHHHHhhhcCCCCCCCCHHHHHHhhc
Q psy3301 276 LHPPLNI-------------------------PATCTAELSDKGQ-------QFLTTLFYRFDKDGDGALSPEEQARLFS 323 (608)
Q Consensus 276 ~~p~~~~-------------------------~~~~~~eLs~~~~-------~~l~~~F~~fD~d~dG~ls~~El~~~~~ 323 (608)
+...+.. ..+.+..++..+. ..++.+|+.||+|+||.|+.+||+.++.
T Consensus 752 l~~~L~~~~~~~~~~~~~~~s~~~~~~l~~~~D~d~dG~Is~~EF~~l~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~ 831 (900)
T 1qxp_A 752 LMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKKWQGIYKRFETDRSGTIGSNELPGAFE 831 (900)
T ss_dssp HTTTSCC----CCSCC--CCCHHHHHHHHHHHCCSSSSSBCSHHHHHHHHHHHHHSSCC----CCSCC-------CCTTG
T ss_pred HHHHHHHhcccccccccCCCCHHHHHHHHHHHCCCCCCeECHHHHHHHHHHHHHHHHHHHHhCCCCCCccCHHHHHHHHH
Confidence 1000100 1111222332221 2334569999999999999999999999
Q ss_pred cCCCCCCCCCccccccceecCCCCccchhhHHhHhhhh
Q psy3301 324 LCPPECPPWTDREMRAMVATNSKGWITMQGFLCYWILT 361 (608)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~~ 361 (608)
.+|....+.+.+.+++.+| |++|.|+|+||++.....
T Consensus 832 ~~g~~ls~~~~~~l~~~~d-d~dg~Is~~EF~~~~~~l 868 (900)
T 1qxp_A 832 AAGFHLNQHIYSMIIRRYS-DETGNMDFDNFISCLVRL 868 (900)
T ss_dssp GGTCCCCSCCCC---------CCSCCCHHHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHhc-CCCCeECHHHHHHHHHHH
Confidence 9886566777889999999 999999999999988765
No 422
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.13 E-value=6.1e-11 Score=132.23 Aligned_cols=115 Identities=20% Similarity=0.179 Sum_probs=84.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHcCCCCCc----CCC---CC--------cceEe---cCccCCCceeEEEEeCCCCCCCh
Q psy3301 10 NVRILLLGDRHVGKTSLILSLVSEEFPEL----VPS---KA--------EEITI---PPDVTPEMVPTHIVDYSEVDQTV 71 (608)
Q Consensus 10 ~~kI~lvG~~~vGKTSLi~~l~~~~~~~~----~~~---~~--------~~~~i---~~~~~~~~~~~~i~Dt~G~~~~~ 71 (608)
-.+|+|+|+.++|||||..+|+...-... +.. .. ..+|| ...+.+.++.++|+|||||.+|.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence 35799999999999999999974321110 110 00 01222 23356678899999999999999
Q ss_pred HHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCC
Q psy3301 72 DELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDY 130 (608)
Q Consensus 72 ~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 130 (608)
......++-+|++|+|+|+...-.-+... .|..... .++|+|+++||+|....
T Consensus 82 ~Ev~raL~~~DgavlVVDa~~GV~~qT~~-v~~~a~~-----~~lp~i~~INKmDr~~a 134 (638)
T 3j25_A 82 AEVYRSLSVLDGAILLISAKDGVQAQTRI-LFHALRK-----MGIPTIFFINKIDQNGI 134 (638)
T ss_dssp HHHHHHHTTCSEEECCEESSCTTCSHHHH-HHHHHHH-----HTCSCEECCEECCSSSC
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCcHHHHH-HHHHHHH-----cCCCeEEEEeccccccC
Confidence 99999999999999999999875544443 5555433 37899999999997643
No 423
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.13 E-value=2.9e-11 Score=126.07 Aligned_cols=74 Identities=15% Similarity=0.155 Sum_probs=64.4
Q ss_pred CCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEcCC----------hhhHHHHHHhHHHHHhhhccCCCCcEEEEEe
Q psy3301 54 PEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSVVD----------DASIDRLSSHWLPFLRNCLVDTCLPIVLVGN 123 (608)
Q Consensus 54 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~~----------~~s~~~~~~~~~~~i~~~~~~~~~piilv~n 123 (608)
..++.+.||||+|++.++..+..++++++++|+|||+++ ..+|+.+. .|+..+.......++|+|||||
T Consensus 214 ~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~-~~~~~i~~~~~~~~~piiLvgN 292 (402)
T 1azs_C 214 VDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEAL-NLFKSIWNNRWLRTISVILFLN 292 (402)
T ss_dssp ETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHH-HHHHHHHTCTTCSSCCEEEEEE
T ss_pred cCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHH-HHHHHHHhcccCCCCeEEEEEE
Confidence 346889999999999999999999999999999999999 88999988 6777776422456899999999
Q ss_pred CcCCC
Q psy3301 124 KVDLV 128 (608)
Q Consensus 124 K~Dl~ 128 (608)
|+|+.
T Consensus 293 K~DL~ 297 (402)
T 1azs_C 293 KQDLL 297 (402)
T ss_dssp CHHHH
T ss_pred Chhhh
Confidence 99973
No 424
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.12 E-value=3.2e-11 Score=124.79 Aligned_cols=102 Identities=20% Similarity=0.192 Sum_probs=75.4
Q ss_pred CCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEcCC----------hhhHHHHHHhHHHHHhhhccCCCCcEEEEE
Q psy3301 53 TPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSVVD----------DASIDRLSSHWLPFLRNCLVDTCLPIVLVG 122 (608)
Q Consensus 53 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~~----------~~s~~~~~~~~~~~i~~~~~~~~~piilv~ 122 (608)
...++.+.+|||+|++.++..+..++++++++|+|||+++ ..+++... .|...+.......++|+|||+
T Consensus 197 ~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~-~~~~~i~~~~~~~~~piILv~ 275 (362)
T 1zcb_A 197 EIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESL-NIFETIVNNRVFSNVSIILFL 275 (362)
T ss_dssp EETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHH-HHHHHHHTCGGGTTSEEEEEE
T ss_pred eeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHH-HHHHHHhcchhhCCCCEEEEE
Confidence 3356889999999999999999999999999999999999 77899888 555555532234689999999
Q ss_pred eCcCCCCC----------------------------------------C-C---cccCcccCcCHHHHHHHHHHHHh
Q psy3301 123 NKVDLVDY----------------------------------------S-T---VESSAKTLKNISEMFYYAQKAVL 155 (608)
Q Consensus 123 nK~Dl~~~----------------------------------------~-~---~e~SAk~~~~i~~lf~~l~~~i~ 155 (608)
||+|+... . . ++|||+++.||.++|.++.+.+.
T Consensus 276 NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~ 352 (362)
T 1zcb_A 276 NKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTIL 352 (362)
T ss_dssp ECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred EChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHH
Confidence 99998410 0 1 57888888888888888877764
No 425
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.11 E-value=6e-11 Score=127.28 Aligned_cols=142 Identities=11% Similarity=0.056 Sum_probs=76.9
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCC-CCCCCCCcCCCceEecceE-----eCCcceeEeeeec--------cc
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSK-TSITSPVECDPPYTINTTT-----VYGQEKYLVLKEI--------LV 472 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~-~~t~~~~~~~~~~~i~~~~-----v~Gqe~~~~l~~~--------~~ 472 (608)
+..++|+|+|.+|||||||++++++....... .+..+.+.+...+.+++.+ .+|++.+..+.+. ++
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 34589999999999999999999998642221 1222222222334455543 3898776544322 22
Q ss_pred cc------ccccCCCCcccc-----ccccc-CCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCC
Q psy3301 473 RD------EQLPVLLPVDVD-----CDKYF-STSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANN 538 (608)
Q Consensus 473 ~~------v~d~~l~~~~~~-----~~~~~-~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~ 538 (608)
+. |+| .++.... ...+. ...++|+++|+||+|+....... .+++++. +..+++++| ++.|
T Consensus 311 ~~aD~vl~VvD--~s~~~s~~~~~~~~~~l~~l~~~piIvV~NK~Dl~~~~~~~---~~~l~~~-~~~~~i~vSAktg~G 384 (476)
T 3gee_A 311 AEADLILYLLD--LGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAANADAL---IRAIADG-TGTEVIGISALNGDG 384 (476)
T ss_dssp SSCSEEEEEEE--TTTCSSGGGHHHHHHHHHHCTTSEEEEEEECTTSCTTTHHH---HHHHHHH-HTSCEEECBTTTTBS
T ss_pred ccCCEEEEEEE--CCCCcchhhhHHHHHHHHhcCCCCEEEEEECcCCCCccchh---HHHHHhc-CCCceEEEEECCCCC
Confidence 22 677 5554321 11111 11379999999999998655442 2445555 234588999 8999
Q ss_pred HHHHHHHHHHHHc-CCC
Q psy3301 539 DREVFVKLATMAA-FPR 554 (608)
Q Consensus 539 v~e~F~~l~~~a~-~p~ 554 (608)
++++|..|.+.+. .+.
T Consensus 385 I~eL~~~i~~~~~~~~~ 401 (476)
T 3gee_A 385 IDTLKQHMGDLVKNLDK 401 (476)
T ss_dssp HHHHHHHHTHHHHSSCC
T ss_pred HHHHHHHHHHHHhhccC
Confidence 9999999999886 443
No 426
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Probab=99.11 E-value=4e-11 Score=135.87 Aligned_cols=136 Identities=8% Similarity=0.103 Sum_probs=93.8
Q ss_pred HHHHHHHHHH--hccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhc-CCCccCCCCcchhhHHHHHHHHHh
Q psy3301 173 CIKALTRIFK--VCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNI-NDGVSANNCITLNGFLFLHNLFMQ 249 (608)
Q Consensus 173 ~~~~L~~~f~--~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~-~~~~~~~~~i~~~~F~~l~~~~~~ 249 (608)
....|+++|. .+|.|+||.|+..||..+++. ..++++++++.++... ..+..++|.|+|++|+.++.....
T Consensus 144 ~~~~Lk~~F~~~~fD~d~dG~Is~~EL~~~l~~------~~~ev~~li~~~d~~~~~~D~d~~g~idf~EF~~~~~~l~~ 217 (799)
T 2zkm_X 144 RSTFLDKILVKLKMQLNSEGKIPVKNFFQMFPA------DRKRVEAALSACHLPKGKNDAINPEDFPEPVYKSFLMSLCP 217 (799)
T ss_dssp HHHHHHHHHHHHHHSCCTTSCEEHHHHHHHSCS------CHHHHHHHHHHTTCCCCTTCEECGGGCCHHHHHHHHHHHSC
T ss_pred HHHHHHHHhHHhccCCCCCCeECHHHHHHHHhh------hHHHHHHHHHHhCcCccccccCCCCcCCHHHHHHHHHHccC
Confidence 3567899999 899999999999999999875 3688888888887411 111225789999999988764311
Q ss_pred cCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccC-CCC
Q psy3301 250 RGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLC-PPE 328 (608)
Q Consensus 250 ~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~-~~~ 328 (608)
.+.++.+|+.||+|++|+|+.+||+..+... |+.
T Consensus 218 ---------------------------------------------r~el~~aF~~fD~d~~g~Is~~eL~~fL~~~Qge~ 252 (799)
T 2zkm_X 218 ---------------------------------------------RPEIDEIFTSYHAKAKPYMTKEHLTKFINQKQRDS 252 (799)
T ss_dssp ---------------------------------------------CHHHHTTCC--------CCCHHHHHHHHHHTCC--
T ss_pred ---------------------------------------------HHHHHHHHHHhccCCCCeEcHHHHHHHHHHhcCCc
Confidence 2457888999999999999999999999987 433
Q ss_pred ---------CCCCCccccccceecC----CCCccchhhHHhHhh
Q psy3301 329 ---------CPPWTDREMRAMVATN----SKGWITMQGFLCYWI 359 (608)
Q Consensus 329 ---------~~~~~~~~~~~~~d~~----~~g~i~~~ef~~~w~ 359 (608)
....++.++++.++.| ++|.|+|+||+.++.
T Consensus 253 ~~~~~~~~~~t~ee~~~iI~~~d~d~~~~~dg~is~eeF~~~L~ 296 (799)
T 2zkm_X 253 RLNSLLFPPARPDQVQGLIDKYEPSGINAQRGQLSPEGMVWFLC 296 (799)
T ss_dssp -------------CHHHHHHHHCCC--------CCHHHHHHHHH
T ss_pred ccccccccCCCHHHHHHHHHHhhcccccccCCccchhhhhhccc
Confidence 3345678899999988 899999999998754
No 427
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.10 E-value=3.2e-10 Score=116.58 Aligned_cols=83 Identities=16% Similarity=0.167 Sum_probs=55.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHcCCCCC-cCCCCCcceEe-cCccCCC---------------ceeEEEEeCCCCCCChH
Q psy3301 10 NVRILLLGDRHVGKTSLILSLVSEEFPE-LVPSKAEEITI-PPDVTPE---------------MVPTHIVDYSEVDQTVD 72 (608)
Q Consensus 10 ~~kI~lvG~~~vGKTSLi~~l~~~~~~~-~~~~~~~~~~i-~~~~~~~---------------~~~~~i~Dt~G~~~~~~ 72 (608)
.++|+|+|.+|||||||+++|++..+.. +++.++-.... ...+... ...+.+|||||+..+..
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 3689999999999999999999977432 23332211110 0111111 25799999999987642
Q ss_pred H-------HHHHHHhcCcEEEEEEcCC
Q psy3301 73 E-------LTEEIQKAHVICLVYSVVD 92 (608)
Q Consensus 73 ~-------~~~~~~~ad~iilV~d~~~ 92 (608)
. ....++.+|++++|+|+++
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 2 3456899999999999986
No 428
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.09 E-value=1e-09 Score=124.08 Aligned_cols=131 Identities=14% Similarity=0.075 Sum_probs=91.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHcCCC--------CCc--CCC-----CCcceEecC-----cc-----CCCceeEEEE
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVSEEF--------PEL--VPS-----KAEEITIPP-----DV-----TPEMVPTHIV 62 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~~~~--------~~~--~~~-----~~~~~~i~~-----~~-----~~~~~~~~i~ 62 (608)
.+..+|+|+|+.++|||||..+|+...- ... +.. ....+||.. .+ ...++.++|+
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 3456899999999999999999973220 000 000 001122211 11 2236889999
Q ss_pred eCCCCCCChHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCCCcccCcccCcC
Q psy3301 63 DYSEVDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYSTVESSAKTLKN 142 (608)
Q Consensus 63 Dt~G~~~~~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~e~SAk~~~~ 142 (608)
|||||.+|.......++-+|++|+|+|+...-..+... .|....+ .++|+++++||+|. .+.+
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~-v~~~a~~-----~~lp~i~~iNKiDr-----------~~a~ 153 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSET-VWRQANK-----YGVPRIVYVNKMDR-----------QGAN 153 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHH-HHHHHHH-----HTCCEEEEEECSSS-----------TTCC
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHH-HHHHHHH-----cCCCeEEEEccccc-----------cCcc
Confidence 99999999999999999999999999999876656554 5665444 37999999999994 4556
Q ss_pred HHHHHHHHHHHHh
Q psy3301 143 ISEMFYYAQKAVL 155 (608)
Q Consensus 143 i~~lf~~l~~~i~ 155 (608)
+..+.+.+...+-
T Consensus 154 ~~~~~~ei~~~l~ 166 (709)
T 4fn5_A 154 FLRVVEQIKKRLG 166 (709)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHhhhhcc
Confidence 6777777766653
No 429
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.08 E-value=1.3e-11 Score=119.06 Aligned_cols=135 Identities=16% Similarity=0.083 Sum_probs=85.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHcCCCCCc------CCCCCc------------ceEecC----cc----------CCCc
Q psy3301 9 RNVRILLLGDRHVGKTSLILSLVSEEFPEL------VPSKAE------------EITIPP----DV----------TPEM 56 (608)
Q Consensus 9 ~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~------~~~~~~------------~~~i~~----~~----------~~~~ 56 (608)
+..+|+++|.+|||||||+++|+....... ..+..+ ...+.. .+ ...+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 356899999999999999999987522110 011000 000100 00 1235
Q ss_pred eeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCCC--C--
Q psy3301 57 VPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYS--T-- 132 (608)
Q Consensus 57 ~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~--~-- 132 (608)
..+.+|||+|+-..... +...++.+++|+|+++.... .. .+... .+.|+++|+||+|+.... .
T Consensus 109 ~d~iiidt~G~~~~~~~---~~~~~~~~i~vvd~~~~~~~--~~-~~~~~-------~~~~~iiv~NK~Dl~~~~~~~~~ 175 (221)
T 2wsm_A 109 CDLLLIENVGNLICPVD---FDLGENYRVVMVSVTEGDDV--VE-KHPEI-------FRVADLIVINKVALAEAVGADVE 175 (221)
T ss_dssp CSEEEEEEEEBSSGGGG---CCCSCSEEEEEEEGGGCTTH--HH-HCHHH-------HHTCSEEEEECGGGHHHHTCCHH
T ss_pred CCEEEEeCCCCCCCCch---hccccCcEEEEEeCCCcchh--hh-hhhhh-------hhcCCEEEEecccCCcchhhHHH
Confidence 67899999985111110 01257889999998876431 11 11111 146899999999985321 1
Q ss_pred ---------------cccCcccCcCHHHHHHHHHHHHhC
Q psy3301 133 ---------------VESSAKTLKNISEMFYYAQKAVLH 156 (608)
Q Consensus 133 ---------------~e~SAk~~~~i~~lf~~l~~~i~~ 156 (608)
+++||++|.|+++++.++.+.+..
T Consensus 176 ~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 176 KMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp HHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999887754
No 430
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein STR and functional analyses, riken structural genomics/proteomi initiative; 2.20A {Homo sapiens} PDB: 2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A 2het_A
Probab=99.06 E-value=2e-10 Score=109.45 Aligned_cols=130 Identities=16% Similarity=0.130 Sum_probs=104.6
Q ss_pred hccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHHHhcCCCcchhHHhhh
Q psy3301 183 VCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQRGRSHTTWTVLRK 262 (608)
Q Consensus 183 ~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~~~~~~~e~~w~~lr~ 262 (608)
.++.+++|.|+.+|+..+++. ++ ++.+++..+...++.+. ++|.|++++|..++..... .
T Consensus 7 ~mg~~~~g~l~~~el~~~~~~-~~--~~~~~i~~~f~~~d~~~-----~~G~i~~~ef~~~l~~~~~---~--------- 66 (207)
T 2d8n_A 7 GMGNSKSGALSKEILEELQLN-TK--FSEEELCSWYQSFLKDC-----PTGRITQQQFQSIYAKFFP---D--------- 66 (207)
T ss_dssp -CTTCCTTCCCHHHHHHHHHH-SS--CCHHHHHHHHHHHHHHC-----TTSEEEHHHHHHHHHHTCT---T---------
T ss_pred hhccccCCCCCHHHHHHHHHH-cC--CCHHHHHHHHHHHHhhC-----CCCCCCHHHHHHHHHHhcc---C---------
Confidence 467899999999999999986 45 68999999999999872 2889999999977543110 0
Q ss_pred ccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCCCCCCCCCcccccccee
Q psy3301 263 FGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPECPPWTDREMRAMVA 342 (608)
Q Consensus 263 f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~~~~~~~~~~~~~~~~d 342 (608)
..+ ...+..+|+.||.|++|.|+.+|+..++...+......+...+++.+|
T Consensus 67 --------------------------~~~---~~~~~~~f~~~D~d~~G~i~~~Ef~~~~~~~~~~~~~~~~~~~f~~~D 117 (207)
T 2d8n_A 67 --------------------------TDP---KAYAQHVFRSFDSNLDGTLDFKEYVIALHMTTAGKTNQKLEWAFSLYD 117 (207)
T ss_dssp --------------------------SCC---HHHHHHHHHHHCTTCCSEEEHHHHHHHHHHHSCSSSSTTHHHHHHHHC
T ss_pred --------------------------CCc---HHHHHHHHHHhcCCCCCeEeHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 001 356889999999999999999999999987763344455788899999
Q ss_pred cCCCCccchhhHHhHhhhh
Q psy3301 343 TNSKGWITMQGFLCYWILT 361 (608)
Q Consensus 343 ~~~~g~i~~~ef~~~w~~~ 361 (608)
.|++|.|+++||...+.-.
T Consensus 118 ~d~~G~I~~~E~~~~l~~~ 136 (207)
T 2d8n_A 118 VDGNGTISKNEVLEIVMAI 136 (207)
T ss_dssp TTCSSEECHHHHHHHHHHH
T ss_pred CCCCCeEcHHHHHHHHHHH
Confidence 9999999999999887653
No 431
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.05 E-value=6.2e-11 Score=119.94 Aligned_cols=136 Identities=15% Similarity=0.124 Sum_probs=83.3
Q ss_pred eEEEEEEccCCCchHHHHHHHhcCCCCCCCC-CCCCCCcC-----CCceEecceEeCCcceeE--------eeeeccccc
Q psy3301 409 VYVCHVIGNRSTGKTALCQSILRKHHDSSKT-SITSPVEC-----DPPYTINTTTVYGQEKYL--------VLKEILVRD 474 (608)
Q Consensus 409 ~~k~~viG~~gvGKTsll~~f~~~~~~~~~~-~t~~~~~~-----~~~~~i~~~~v~Gqe~~~--------~l~~~~~~~ 474 (608)
..+++|+|.+|||||||++++++..+..... +..+.+.. .....+.-++.+|+.++. .....++++
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ 86 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALAD 86 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhc
Confidence 3579999999999999999999998864322 11111000 013344455668977632 222233333
Q ss_pred ------ccccCCCCcccccc----cccC--CCCCcEEEEEeCCCCCcchhcccccHHHHHHHc-CCCCceEEc--cCCCH
Q psy3301 475 ------EQLPVLLPVDVDCD----KYFS--TSKIPVMLVAGKSDMPRARQDYLMQPDIFCETH-KLSPAHSFS--AANND 539 (608)
Q Consensus 475 ------v~d~~l~~~~~~~~----~~~~--~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~-~~~~~~~~S--~~~~v 539 (608)
|+| .++.....+ .... .+++|+++|+||+|+...+.. ..+.++++ +..+.+++| ++.|+
T Consensus 87 ad~il~VvD--~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~----~~~~~~~~~~~~~~~~iSA~~g~gv 160 (301)
T 1wf3_A 87 VNAVVWVVD--LRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEE----AMKAYHELLPEAEPRMLSALDERQV 160 (301)
T ss_dssp CSEEEEEEE--TTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHH----HHHHHHHTSTTSEEEECCTTCHHHH
T ss_pred CCEEEEEEE--CCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHH----HHHHHHHhcCcCcEEEEeCCCCCCH
Confidence 677 544321111 1111 247999999999999754431 23344443 333468888 79999
Q ss_pred HHHHHHHHHHH
Q psy3301 540 REVFVKLATMA 550 (608)
Q Consensus 540 ~e~F~~l~~~a 550 (608)
+++|..|++.+
T Consensus 161 ~~l~~~l~~~l 171 (301)
T 1wf3_A 161 AELKADLLALM 171 (301)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHhc
Confidence 99999998865
No 432
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.04 E-value=6.8e-11 Score=121.98 Aligned_cols=88 Identities=16% Similarity=0.044 Sum_probs=61.8
Q ss_pred CceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCCC----
Q psy3301 55 EMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDY---- 130 (608)
Q Consensus 55 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~---- 130 (608)
.++.+.|+||||..+... ...+.+|++++|+|++..+.++.+. ... .+.|+++|+||+|+...
T Consensus 147 ~~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~----~~~------~~~p~ivv~NK~Dl~~~~~~~ 213 (341)
T 2p67_A 147 AGYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIK----KGL------MEVADLIVINKDDGDNHTNVA 213 (341)
T ss_dssp TTCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCC----HHH------HHHCSEEEECCCCTTCHHHHH
T ss_pred cCCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHH----Hhh------hcccCEEEEECCCCCChHHHH
Confidence 467899999999765443 2468999999999987654322111 000 14589999999998642
Q ss_pred --------------------CC--cccCcccCcCHHHHHHHHHHHHh
Q psy3301 131 --------------------ST--VESSAKTLKNISEMFYYAQKAVL 155 (608)
Q Consensus 131 --------------------~~--~e~SAk~~~~i~~lf~~l~~~i~ 155 (608)
.. +++||++|.|++++++.+.+.+.
T Consensus 214 ~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 214 IARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 11 68999999999999999988764
No 433
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal specific guanylate cyclase activator; 2.40A {Bos taurus} SCOP: a.39.1.5
Probab=99.03 E-value=4.2e-10 Score=105.68 Aligned_cols=127 Identities=17% Similarity=0.158 Sum_probs=93.6
Q ss_pred HHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHHHhc-CCC
Q psy3301 175 KALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQR-GRS 253 (608)
Q Consensus 175 ~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~~~~-~~~ 253 (608)
..+.++|..+|.|++|.|+..|+..++.. ++...+.+++..++..++.+ ++|.|++++|..++...... |.+
T Consensus 63 ~~~~~~f~~~D~d~~g~i~~~Ef~~~~~~-~~~~~~~~~~~~~f~~~D~d------~~G~I~~~E~~~~~~~~~~~~g~~ 135 (193)
T 1bjf_A 63 KFAEHVFRTFDANGDGTIDFREFIIALSV-TSRGKLEQKLKWAFSMYDLD------GNGYISKAEMLEIVQAIYKMVSSV 135 (193)
T ss_dssp HHHHHHHHHHCSSCSSEEEHHHHHHHHHH-HTSSCHHHHHHHHHHHHCTT------CSSCEEHHHHHHHHHHHHTTCCCT
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHH-HcCCCHHHHHHHHHhhcCCC------CCCeECHHHHHHHHHHHHHHhccc
Confidence 45788999999999999999999999886 56677788899999999888 89999999999877543221 110
Q ss_pred cchhHHhhhccCCCCccccccccCCCCCCCCCCccccCH---hHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCCCCCC
Q psy3301 254 HTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSD---KGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPECP 330 (608)
Q Consensus 254 e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~---~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~~~~~ 330 (608)
..++. ...+.+..+|+.+|.|+||.|+.+|+..++...+
T Consensus 136 ----------------------------------~~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~~~~---- 177 (193)
T 1bjf_A 136 ----------------------------------MKMPEDESTPEKRTEKIFRQMDTNRDGKLSLEEFIRGAKSDP---- 177 (193)
T ss_dssp ----------------------------------TTSCGGGSSHHHHHHHHHHHSCTTCSSEECHHHHHHHHHHCT----
T ss_pred ----------------------------------cCCCcccccHHHHHHHHHHHhCCCCCCeEeHHHHHHHHhcCH----
Confidence 01111 1246688999999999999999999999997543
Q ss_pred CCCccccccceecCCCCcc
Q psy3301 331 PWTDREMRAMVATNSKGWI 349 (608)
Q Consensus 331 ~~~~~~~~~~~d~~~~g~i 349 (608)
+..+++ .+|.|++|.|
T Consensus 178 --~~~~~~-~~D~~~dG~i 193 (193)
T 1bjf_A 178 --SIVRLL-QCDPSSAGQF 193 (193)
T ss_dssp --HHHHTT-CC--------
T ss_pred --HHHHHh-ccCCCCCCCC
Confidence 367788 9999999976
No 434
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.02 E-value=2.6e-11 Score=127.89 Aligned_cols=142 Identities=12% Similarity=0.107 Sum_probs=90.2
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCCC-CCCCCCcCCCce------EecceEeCCcceeEeeeec-------cc
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSKT-SITSPVECDPPY------TINTTTVYGQEKYLVLKEI-------LV 472 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~-~t~~~~~~~~~~------~i~~~~v~Gqe~~~~l~~~-------~~ 472 (608)
.+.++++|+|..|||||||+++++++.+..... +..+.+.....+ .++-++.+|++.|..+.+. ++
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l 111 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVF 111 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHH
Confidence 456899999999999999999999988743222 122221111122 3334566998887655332 22
Q ss_pred cc------ccccCCCCcc--cccccccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHH
Q psy3301 473 RD------EQLPVLLPVD--VDCDKYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREV 542 (608)
Q Consensus 473 ~~------v~d~~l~~~~--~~~~~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~ 542 (608)
+. |+| ....+ ...-.+....++|+++|+||+|+...+.. +..++++++++++ ++++| ++.|++++
T Consensus 112 ~~aD~vllVvD--~~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~-v~~vSAktg~gI~eL 186 (423)
T 3qq5_A 112 YRADCGILVTD--SAPTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAK-VLLVSALQKKGFDDI 186 (423)
T ss_dssp TSCSEEEEECS--SSCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCC-CCCCSSCCTTSTTTH
T ss_pred hcCCEEEEEEe--CCChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCC-EEEEECCCCCCHHHH
Confidence 22 667 42222 11112233458999999999999865543 5677788888875 88999 89999999
Q ss_pred HHHHHHHHcCC
Q psy3301 543 FVKLATMAAFP 553 (608)
Q Consensus 543 F~~l~~~a~~p 553 (608)
|..|++.+..+
T Consensus 187 ~~~L~~~l~~~ 197 (423)
T 3qq5_A 187 GKTISEILPGD 197 (423)
T ss_dssp HHHHHHHSCCC
T ss_pred HHHHHHhhhhh
Confidence 99999988443
No 435
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.01 E-value=3e-10 Score=112.50 Aligned_cols=98 Identities=14% Similarity=-0.034 Sum_probs=61.4
Q ss_pred ceeEEEEeCCCCCCChHHH------HHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEEEeCcCCCC
Q psy3301 56 MVPTHIVDYSEVDQTVDEL------TEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVD 129 (608)
Q Consensus 56 ~~~~~i~Dt~G~~~~~~~~------~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 129 (608)
.+.+.||||||+....... ...+.. +++++|+|+....+.......+...... ....++|+++|+||+|+..
T Consensus 108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLI-DLRLGATTIPALNKVDLLS 185 (262)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHH-HHHHTSCEEEEECCGGGCC
T ss_pred cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHH-hcccCCCeEEEEecccccc
Confidence 3579999999976543221 123344 7788888876443322222111111110 1123679999999999863
Q ss_pred C---------------------------------------------CCcccCcccCcCHHHHHHHHHHHHh
Q psy3301 130 Y---------------------------------------------STVESSAKTLKNISEMFYYAQKAVL 155 (608)
Q Consensus 130 ~---------------------------------------------~~~e~SAk~~~~i~~lf~~l~~~i~ 155 (608)
. ..+++||+++.|++++++++.+.+.
T Consensus 186 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 186 EEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 2 1178999999999999999887663
No 436
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.00 E-value=1.4e-10 Score=109.00 Aligned_cols=102 Identities=13% Similarity=0.147 Sum_probs=65.7
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCC---CCCCCCCCCcCCCceEecceEeCCcceeEeeeeccccc---------
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDS---SKTSITSPVECDPPYTINTTTVYGQEKYLVLKEILVRD--------- 474 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~---~~~~t~~~~~~~~~~~i~~~~v~Gqe~~~~l~~~~~~~--------- 474 (608)
...++|+|+|++|||||||++++++..+.. .+.++.+. .+ ..+.+.-++++|++.|...+..+++.
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~-~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i 123 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-DY-DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLI 123 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC-------------CC-CCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee-ee-cCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEE
Confidence 456899999999999999999999988754 22223322 11 23345556779999887666555432
Q ss_pred -ccccCCC-Ccc--ccccccc----------CCCCCcEEEEEeCCCCCcchh
Q psy3301 475 -EQLPVLL-PVD--VDCDKYF----------STSKIPVMLVAGKSDMPRARQ 512 (608)
Q Consensus 475 -v~d~~l~-~~~--~~~~~~~----------~~~~~p~ilVgnK~DL~~~~~ 512 (608)
||| ++ +.+ .....++ ...++|+++|+||+|+.+.++
T Consensus 124 ~v~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 173 (193)
T 2ged_A 124 FMVD--STVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 173 (193)
T ss_dssp EEEE--TTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred EEEE--CCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence 677 65 333 1111111 346899999999999986554
No 437
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=98.99 E-value=1.8e-10 Score=98.02 Aligned_cols=72 Identities=11% Similarity=0.179 Sum_probs=64.4
Q ss_pred cccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCCCCCCCCCccccccceecCCCCccchhhHHhHhhhh
Q psy3301 288 AELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPECPPWTDREMRAMVATNSKGWITMQGFLCYWILT 361 (608)
Q Consensus 288 ~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~~ 361 (608)
..|++...+.++++|+.||+|+||+|+.+||+.+|+..| ....+..++++.+|.|++|.|+|+||+..+...
T Consensus 14 ~~ls~~~~~~~~~~F~~~D~d~dG~Is~~el~~~l~~~g--l~~~el~~i~~~~D~d~dG~I~~~EF~~~m~~~ 85 (110)
T 1iq3_A 14 WRITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSK--LSIPELSYIWELSDADCDGALTLPEFCAAFHLI 85 (110)
T ss_dssp CCCSSSSHHHHHHHHHHHCCSSSSEEEHHHHHHHCCSSS--CSSCCHHHHHHHHCSSSCSEEEHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcC--CCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHH
Confidence 456777789999999999999999999999999999987 666678899999999999999999999987543
No 438
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.99 E-value=1.2e-10 Score=118.25 Aligned_cols=96 Identities=18% Similarity=0.050 Sum_probs=69.3
Q ss_pred eEeCCcceeEeeeeccccc------ccccCCCCccccc-------------c------cccCCCCCcEEEEEeCCCCCcc
Q psy3301 456 TTVYGQEKYLVLKEILVRD------EQLPVLLPVDVDC-------------D------KYFSTSKIPVMLVAGKSDMPRA 510 (608)
Q Consensus 456 ~~v~Gqe~~~~l~~~~~~~------v~d~~l~~~~~~~-------------~------~~~~~~~~p~ilVgnK~DL~~~ 510 (608)
.+++||++|+.+|..|+++ ||| ++..+..+ . ......++|++|||||+||.+.
T Consensus 172 wDtgGQe~~R~~w~~yf~~~~~iIfV~d--ls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~~~ 249 (327)
T 3ohm_A 172 VDVGGQRSERRKWIHCFENVTSIMFLVA--LSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEE 249 (327)
T ss_dssp EEECCSHHHHTTGGGGCSSCSEEEEEEE--GGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHHHH
T ss_pred EEcCCchhHHHHHHHHhCCCCEEEEEEE--CccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhhhh
Confidence 3449999999999999998 776 65433111 0 1112368999999999999865
Q ss_pred h----------------hcccccHHHHH----------HHcCCCCceEEc--cCCCHHHHHHHHHHHHcCCC
Q psy3301 511 R----------------QDYLMQPDIFC----------ETHKLSPAHSFS--AANNDREVFVKLATMAAFPR 554 (608)
Q Consensus 511 ~----------------~~~~~~~~~~~----------~~~~~~~~~~~S--~~~~v~e~F~~l~~~a~~p~ 554 (608)
+ ++..+++.+|. ++.++. ++++| ++.||+++|..+++.++..+
T Consensus 250 ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~-~~~TsA~d~~nV~~vF~~v~~~Il~~~ 320 (327)
T 3ohm_A 250 KIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIY-SHFTCATDTENIRFVFAAVKDTILQLN 320 (327)
T ss_dssp HTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEE-EEECCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcE-EEEEEeecCHHHHHHHHHHHHHHHHHh
Confidence 5 35567788884 344443 45566 79999999999999997665
No 439
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.96 E-value=2.2e-10 Score=122.36 Aligned_cols=139 Identities=10% Similarity=0.035 Sum_probs=78.4
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCCC-CCCCCCcCCCceEecceE-----eCCcceeEeeeec--------cc
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSKT-SITSPVECDPPYTINTTT-----VYGQEKYLVLKEI--------LV 472 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~-~t~~~~~~~~~~~i~~~~-----v~Gqe~~~~l~~~--------~~ 472 (608)
++.++|+|+|++|||||||++++++..+..... +..+.+.....+.+++.+ .+|+..+....+. ++
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCC
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 345899999999999999999999876532222 222221222334445443 3887655433222 11
Q ss_pred cc------ccccCCCCcccccc----cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHH
Q psy3301 473 RD------EQLPVLLPVDVDCD----KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDR 540 (608)
Q Consensus 473 ~~------v~d~~l~~~~~~~~----~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~ 540 (608)
+. |+| .++.....+ +.. ...|+++|+||+|+...+.+. ...+++ ...+++++| ++.|++
T Consensus 302 ~~aD~vl~VvD--~s~~~~~~~~~i~~~l--~~~piivV~NK~Dl~~~~~~~--~~~~~~---~~~~~i~iSAktg~Gi~ 372 (462)
T 3geh_A 302 NTADLVLLTID--AATGWTTGDQEIYEQV--KHRPLILVMNKIDLVEKQLIT--SLEYPE---NITQIVHTAAAQKQGID 372 (462)
T ss_dssp CSCSEEEEEEE--TTTCSCHHHHHHHHHH--TTSCEEEEEECTTSSCGGGST--TCCCCT---TCCCEEEEBTTTTBSHH
T ss_pred hcCCEEEEEec--cCCCCCHHHHHHHHhc--cCCcEEEEEECCCCCcchhhH--HHHHhc---cCCcEEEEECCCCCCHH
Confidence 11 566 443321111 111 347999999999998765442 111111 223488999 899999
Q ss_pred HHHHHHHHHHcCCC
Q psy3301 541 EVFVKLATMAAFPR 554 (608)
Q Consensus 541 e~F~~l~~~a~~p~ 554 (608)
++|..|.+.+..+.
T Consensus 373 eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 373 SLETAILEIVQTGK 386 (462)
T ss_dssp HHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHhccC
Confidence 99999999886553
No 440
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.96 E-value=1.3e-10 Score=112.32 Aligned_cols=40 Identities=30% Similarity=0.367 Sum_probs=33.1
Q ss_pred CcEEEEEeCcCCCCCC--C-----------------cccCcccCcCHHHHHHHHHHHHh
Q psy3301 116 LPIVLVGNKVDLVDYS--T-----------------VESSAKTLKNISEMFYYAQKAVL 155 (608)
Q Consensus 116 ~piilv~nK~Dl~~~~--~-----------------~e~SAk~~~~i~~lf~~l~~~i~ 155 (608)
.|+++|+||+|+.... . +++||++|.|++++|..+.+.+.
T Consensus 165 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 165 TADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK 223 (226)
T ss_dssp TCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 5779999999986421 0 88999999999999999987763
No 441
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.95 E-value=1.3e-09 Score=112.86 Aligned_cols=82 Identities=15% Similarity=0.208 Sum_probs=55.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHcCCCC-CcCCCCC-----cceEecCc--------cC-------CCceeEEEEeCCCCCC
Q psy3301 11 VRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKA-----EEITIPPD--------VT-------PEMVPTHIVDYSEVDQ 69 (608)
Q Consensus 11 ~kI~lvG~~~vGKTSLi~~l~~~~~~-~~~~~~~-----~~~~i~~~--------~~-------~~~~~~~i~Dt~G~~~ 69 (608)
++|+|+|.+|||||||+++|++.... .+++.++ ....++.. +. .....+.+|||||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 68999999999999999999986521 2232221 11111100 01 1235799999999866
Q ss_pred Ch-------HHHHHHHHhcCcEEEEEEcCC
Q psy3301 70 TV-------DELTEEIQKAHVICLVYSVVD 92 (608)
Q Consensus 70 ~~-------~~~~~~~~~ad~iilV~d~~~ 92 (608)
.. ......++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 42 234567899999999999985
No 442
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.94 E-value=5.1e-10 Score=113.33 Aligned_cols=138 Identities=13% Similarity=0.084 Sum_probs=85.4
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCC-------CceEecceEeCCcc-ee--------Eeeeecccc
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECD-------PPYTINTTTVYGQE-KY--------LVLKEILVR 473 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~-------~~~~i~~~~v~Gqe-~~--------~~l~~~~~~ 473 (608)
.+|+|+|++|||||||++++++..+..... .++.+... ....+.-++.+|.+ ++ ......+.+
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~~i~s~-~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~ 87 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKISITSR-KAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIG 87 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEECCC-CSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCC-CCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHh
Confidence 479999999999999999999987643221 12110101 12233334457876 21 111111112
Q ss_pred c------ccccCCCCcc---cccccccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCHHHH
Q psy3301 474 D------EQLPVLLPVD---VDCDKYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANNDREV 542 (608)
Q Consensus 474 ~------v~d~~l~~~~---~~~~~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~ 542 (608)
. ++| .++.. ..+.+.....+.|+++|+||+|+...+........++++.++...++++| ++.|++++
T Consensus 88 ~~D~vl~Vvd--~~~~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l 165 (301)
T 1ega_A 88 DVELVIFVVE--GTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTI 165 (301)
T ss_dssp CEEEEEEEEE--TTCCCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHH
T ss_pred cCCEEEEEEe--CCCCCHHHHHHHHHHHhcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHH
Confidence 1 455 33222 11112233468999999999999863444445667788878875588889 79999999
Q ss_pred HHHHHHHH
Q psy3301 543 FVKLATMA 550 (608)
Q Consensus 543 F~~l~~~a 550 (608)
+..+...+
T Consensus 166 ~~~i~~~l 173 (301)
T 1ega_A 166 AAIVRKHL 173 (301)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHhC
Confidence 99998754
No 443
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.94 E-value=1.6e-10 Score=120.07 Aligned_cols=139 Identities=14% Similarity=0.148 Sum_probs=74.6
Q ss_pred ceEEEEEEccCCCchHHHHHHHhcC-CCCCCCC--------CCCCCCcCCC-------ceEecceEeCCc-------cee
Q psy3301 408 NVYVCHVIGNRSTGKTALCQSILRK-HHDSSKT--------SITSPVECDP-------PYTINTTTVYGQ-------EKY 464 (608)
Q Consensus 408 ~~~k~~viG~~gvGKTsll~~f~~~-~~~~~~~--------~t~~~~~~~~-------~~~i~~~~v~Gq-------e~~ 464 (608)
..|+|+|+|++|||||||++++++. .+...+. +|++.+.... .+.+.-++.+|+ ++|
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 3489999999999999999996654 4433331 2222211111 112333444787 777
Q ss_pred Eeeee-------ccccc-----------------ccccCCCCcc---cccc----cccCCCCCcEEEEEeCCCCCcchhc
Q psy3301 465 LVLKE-------ILVRD-----------------EQLPVLLPVD---VDCD----KYFSTSKIPVMLVAGKSDMPRARQD 513 (608)
Q Consensus 465 ~~l~~-------~~~~~-----------------v~d~~l~~~~---~~~~----~~~~~~~~p~ilVgnK~DL~~~~~~ 513 (608)
..+.+ .+++. +|+ +++.. ...+ +.. ..++|+|+|+||+|+...+++
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~--I~~~~~~l~~~d~~~~~~l-~~~~piIlV~NK~Dl~~~~ev 192 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYF--ISPFGHGLKPLDVAFMKAI-HNKVNIVPVIAKADTLTLKER 192 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEE--ECSSSSSCCHHHHHHHHHT-CS-SCEEEEEECCSSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEE--EecCCCCcchhHHHHHHHh-ccCCCEEEEEECCCCCCHHHH
Confidence 77665 33322 344 44311 1121 223 478999999999999877766
Q ss_pred cc--ccHHHHHHHcCCCCceEEc--cCCCHHHHHHHHHHHHc
Q psy3301 514 YL--MQPDIFCETHKLSPAHSFS--AANNDREVFVKLATMAA 551 (608)
Q Consensus 514 ~~--~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~~l~~~a~ 551 (608)
.. .+..++++.++++ ++++| ++.+ ++.|..+++.+.
T Consensus 193 ~~~k~~i~~~~~~~~i~-~~~~Sa~~~~~-~e~~~~l~~~i~ 232 (361)
T 2qag_A 193 ERLKKRILDEIEEHNIK-IYHLPDAESDE-DEDFKEQTRLLK 232 (361)
T ss_dssp HHHHHHHHHHTTCC-CC-SCCCC----------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCC-EEeCCCcCCCc-chhHHHHHHHHH
Confidence 44 5788888888886 88999 6777 778877777653
No 444
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=98.93 E-value=2.2e-10 Score=94.84 Aligned_cols=69 Identities=22% Similarity=0.242 Sum_probs=61.5
Q ss_pred cCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCCCCCCCCCccccccceecCCCCccchhhHHhHhhh
Q psy3301 290 LSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPECPPWTDREMRAMVATNSKGWITMQGFLCYWIL 360 (608)
Q Consensus 290 Ls~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~ 360 (608)
+++...+.++++|+.||+|+||+|+.+|++.+++..| ....+..++++.+|.|++|.|+|+||+..+.+
T Consensus 4 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g--~~~~~~~~i~~~~D~d~dG~i~~~EF~~~~~~ 72 (95)
T 1c07_A 4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTG--LPSTLLAHIWSLCDTKDCGKLSKDQFALAFHL 72 (95)
T ss_dssp SCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTT--CCHHHHHHHHHHHCTTCSSSEETTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcC--CCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHH
Confidence 5667789999999999999999999999999999987 55555788899999999999999999998755
No 445
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding protein; 1.45A {Homo sapiens} SCOP: a.39.1.2 PDB: 3nsi_A 1kso_A 3nsk_A 3nsl_A
Probab=98.93 E-value=2.2e-10 Score=95.53 Aligned_cols=67 Identities=15% Similarity=0.184 Sum_probs=55.9
Q ss_pred HHHHHHHHHhhhc-CCCC-CCCCHHHHHHhhcc-C----CCCCCCCCccccccceecCCCCccchhhHHhHhhh
Q psy3301 294 GQQFLTTLFYRFD-KDGD-GALSPEEQARLFSL-C----PPECPPWTDREMRAMVATNSKGWITMQGFLCYWIL 360 (608)
Q Consensus 294 ~~~~l~~~F~~fD-~d~d-G~ls~~El~~~~~~-~----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~ 360 (608)
....|+++|+.|| +|+| |+|+.+||+.+++. + |....+.+++++++.+|.|+||.|+|+||+....-
T Consensus 8 ~i~~l~~aF~~fd~~dg~~G~Is~~EL~~~l~~~l~~~lg~~~~~~ev~~~i~~~D~dgDG~Idf~EF~~~~~~ 81 (101)
T 3nso_A 8 AVAAIVCTFQEYAGRCGDKYKLCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTNKDCEVDFVEYVRSLAC 81 (101)
T ss_dssp HHHHHHHHHHHHHTTSSCTTEECHHHHHHHHHHHTTTCCCCTTCHHHHHHHHHHHHHCCCSCEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCCEECHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 4678999999998 8998 99999999999986 4 32233455789999999999999999999886543
No 446
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.93 E-value=6.7e-10 Score=119.23 Aligned_cols=135 Identities=11% Similarity=-0.013 Sum_probs=83.6
Q ss_pred ceEEEEEEccCCCchHHHHHHHhcCCCC--CCCCCCCCCCcCCCceEecceE-----eCCcc-eeEeeee--------cc
Q psy3301 408 NVYVCHVIGNRSTGKTALCQSILRKHHD--SSKTSITSPVECDPPYTINTTT-----VYGQE-KYLVLKE--------IL 471 (608)
Q Consensus 408 ~~~k~~viG~~gvGKTsll~~f~~~~~~--~~~~~t~~~~~~~~~~~i~~~~-----v~Gqe-~~~~l~~--------~~ 471 (608)
..++|+|+|.+|||||||++++++..+. ..+. ..+.+.....+.+++.+ ++|++ ++....+ .+
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~-gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIP-GTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSS-CCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCC-CeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 4489999999999999999999998643 2332 22222223444455443 48887 5532111 11
Q ss_pred ccc------ccccCCCCcccccc----cccCCCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--cCCCH
Q psy3301 472 VRD------EQLPVLLPVDVDCD----KYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--AANND 539 (608)
Q Consensus 472 ~~~------v~d~~l~~~~~~~~----~~~~~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~~~~v 539 (608)
++. |+| .++.....+ +.. .+.|+++|+||+||... +..++..+++. .+. +++++| ++.|+
T Consensus 321 ~~~aD~vl~VvD--~s~~~s~~~~~il~~l--~~~piivV~NK~DL~~~--~~~~~~~~~~~-~~~-~~i~iSAktg~Gi 392 (482)
T 1xzp_A 321 IEKADIVLFVLD--ASSPLDEEDRKILERI--KNKRYLVVINKVDVVEK--INEEEIKNKLG-TDR-HMVKISALKGEGL 392 (482)
T ss_dssp HHHCSEEEEEEE--TTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCCC--CCHHHHHHHHT-CST-TEEEEEGGGTCCH
T ss_pred hhcccEEEEEec--CCCCCCHHHHHHHHHh--cCCCEEEEEECcccccc--cCHHHHHHHhc-CCC-cEEEEECCCCCCH
Confidence 222 677 554431111 222 47899999999999753 22223333322 223 378999 89999
Q ss_pred HHHHHHHHHHHc
Q psy3301 540 REVFVKLATMAA 551 (608)
Q Consensus 540 ~e~F~~l~~~a~ 551 (608)
+++|..|.+.+.
T Consensus 393 ~eL~~~l~~~~~ 404 (482)
T 1xzp_A 393 EKLEESIYRETQ 404 (482)
T ss_dssp HHHHHHHHHHTH
T ss_pred HHHHHHHHHHHh
Confidence 999999998754
No 447
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.93 E-value=1.7e-09 Score=112.32 Aligned_cols=139 Identities=11% Similarity=0.069 Sum_probs=85.3
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCC-----ceEecceEeCCcceeEe----------eeecc
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDP-----PYTINTTTVYGQEKYLV----------LKEIL 471 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~-----~~~i~~~~v~Gqe~~~~----------l~~~~ 471 (608)
...++++++|.+|||||||++++++..+.....+..+...... ...+.-++.+|+..+.. +....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 244 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence 4568999999999999999999998764321111111100001 11233344577644311 00111
Q ss_pred c-cc----ccccCCCCcc----ccccccc----C-CCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCCCCceEEc--c
Q psy3301 472 V-RD----EQLPVLLPVD----VDCDKYF----S-TSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSFS--A 535 (608)
Q Consensus 472 ~-~~----v~d~~l~~~~----~~~~~~~----~-~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~~~~~~~S--~ 535 (608)
. .+ ++| +++.. .....++ . ..+.|+++|+||+|+....++ .+..++++..+++ ++++| +
T Consensus 245 ~~ad~illV~D--~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~-~~~iSA~~ 319 (357)
T 2e87_A 245 YLGNLIIYIFD--PSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENI--KRLEKFVKEKGLN-PIKISALK 319 (357)
T ss_dssp GTCSEEEEEEC--TTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHH--HHHHHHHHHTTCC-CEECBTTT
T ss_pred hcCCEEEEEEe--CCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHH--HHHHHHHHhcCCC-eEEEeCCC
Confidence 0 11 666 54432 1111110 0 138999999999999876543 4566777778875 88999 8
Q ss_pred CCCHHHHHHHHHHHH
Q psy3301 536 ANNDREVFVKLATMA 550 (608)
Q Consensus 536 ~~~v~e~F~~l~~~a 550 (608)
+.|++++|..|++.+
T Consensus 320 g~gi~~l~~~i~~~l 334 (357)
T 2e87_A 320 GTGIDLVKEEIIKTL 334 (357)
T ss_dssp TBTHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHH
Confidence 999999999999877
No 448
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.92 E-value=5e-10 Score=108.29 Aligned_cols=142 Identities=12% Similarity=0.099 Sum_probs=79.7
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceE--------ecceEeC-C----------cceeEee
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYT--------INTTTVY-G----------QEKYLVL 467 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~--------i~~~~v~-G----------qe~~~~l 467 (608)
+..++++|+|++|||||||+++|+...+...+.++++. ++..... .+.+.+. | ++.+..+
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~-d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l 114 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAG-DVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDL 114 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEE-ETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTS
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEEC-CCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHH
Confidence 35699999999999999999999988776544334433 2220000 0111111 1 2223222
Q ss_pred e----eccccc---------ccccCCCCcccccccccCCCCC----------cEEEEEeCCCCCcchhcccccHHHHHHH
Q psy3301 468 K----EILVRD---------EQLPVLLPVDVDCDKYFSTSKI----------PVMLVAGKSDMPRARQDYLMQPDIFCET 524 (608)
Q Consensus 468 ~----~~~~~~---------v~d~~l~~~~~~~~~~~~~~~~----------p~ilVgnK~DL~~~~~~~~~~~~~~~~~ 524 (608)
. +.++.+ .|+ ....+...+......... |.++|+||+|+.+.+++..++..+++++
T Consensus 115 ~~~~~d~~~id~~g~i~~~~s~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~ 193 (226)
T 2hf9_A 115 NLDEIDLLFIENVGNLICPADFD-LGTHKRIVVISTTEGDDTIEKHPGIMKTADLIVINKIDLADAVGADIKKMENDAKR 193 (226)
T ss_dssp CGGGCSEEEEECCSCSSGGGGCC-CSCSEEEEEEEGGGCTTTTTTCHHHHTTCSEEEEECGGGHHHHTCCHHHHHHHHHH
T ss_pred hcCCCCEEEEeCCCCccCcchhh-hccCcEEEEEecCcchhhHhhhhhHhhcCCEEEEeccccCchhHHHHHHHHHHHHH
Confidence 2 111111 111 111111000011112233 4499999999976554455667777776
Q ss_pred cCC-CCceEEc--cCCCHHHHHHHHHHHH
Q psy3301 525 HKL-SPAHSFS--AANNDREVFVKLATMA 550 (608)
Q Consensus 525 ~~~-~~~~~~S--~~~~v~e~F~~l~~~a 550 (608)
++. .+++++| ++.|++++|..|++.+
T Consensus 194 ~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 194 INPDAEVVLLSLKTMEGFDKVLEFIEKSV 222 (226)
T ss_dssp HCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hCCCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence 532 2377888 8999999999998865
No 449
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=98.91 E-value=3.1e-10 Score=91.57 Aligned_cols=73 Identities=22% Similarity=0.221 Sum_probs=64.4
Q ss_pred cccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCCCCCCCCCccccccceecCCCCccchhhHHhHhhh
Q psy3301 288 AELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPECPPWTDREMRAMVATNSKGWITMQGFLCYWIL 360 (608)
Q Consensus 288 ~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~ 360 (608)
.+|++...+.++.+|+.||+|++|+|+.+||+.+++.+|....+.+...++..+|.|++|.|+|+||+..|.-
T Consensus 6 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 78 (85)
T 2ktg_A 6 KVLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDKDNSGKFDQETFLTIMLE 78 (85)
T ss_dssp CSSSHHHHHHHHHHHHHTCTTCCSEEEHHHHHHHHHTTSSCCCHHHHHHHHHHHSSSSCSEEEHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 4688888999999999999999999999999999999974344455778889999999999999999998764
No 450
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}
Probab=98.90 E-value=4.1e-09 Score=97.62 Aligned_cols=90 Identities=17% Similarity=0.220 Sum_probs=76.4
Q ss_pred HHHHHHHHhccCCCCCccCHHHHHHHhhccc----CCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHHHhc
Q psy3301 175 KALTRIFKVCDLDNDNLLSDKELNAFQRRCF----DAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQR 250 (608)
Q Consensus 175 ~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~----g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~~~~ 250 (608)
..++.+|+.+| |++|.|+.+||..+++. + |.++++++++.++..++ + ++|.|+|++|+.++..
T Consensus 76 ~~l~~aF~~fD-d~~G~I~~~El~~~l~~-l~~~~G~~~~~~~~~~l~~~~d-d------~dG~I~~~EF~~~~~~---- 142 (174)
T 2i7a_A 76 VHYQHVFQKVQ-TSPGVLLSSDLWKAIEN-TDFLRGIFISRELLHLVTLRYS-D------SVGRVSFPSLVCFLMR---- 142 (174)
T ss_dssp HHHHHHHHHHC-SBTTBEEGGGHHHHHHT-CGGGTTCCCCHHHHHHHHHHHS-C------TTSEECHHHHHHHHHH----
T ss_pred HHHHHHHHHhc-CCCCcCCHHHHHHHHHH-hHhccCCCCCHHHHHHHHHHHc-C------CCCeEcHHHHHHHHHH----
Confidence 56899999999 99999999999999987 6 88999999999999988 6 6899999999977642
Q ss_pred CCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCC-CCCHHHHHHh
Q psy3301 251 GRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDG-ALSPEEQARL 321 (608)
Q Consensus 251 ~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG-~ls~~El~~~ 321 (608)
.+.+..+|+.||+|++| .++..|+..+
T Consensus 143 --------------------------------------------~~~~~~~F~~~D~d~~GI~~~~~Ef~~~ 170 (174)
T 2i7a_A 143 --------------------------------------------LEAMAKTFRNLSKDGKGLYLTEMEWMSL 170 (174)
T ss_dssp --------------------------------------------HHHHHHHHHHHCSSSSCCCCCHHHHHHH
T ss_pred --------------------------------------------HHHHHHHHHHhCCCCCCceecHHHHHHH
Confidence 23477889999999999 3377776654
No 451
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=98.90 E-value=2.2e-09 Score=89.63 Aligned_cols=73 Identities=18% Similarity=0.293 Sum_probs=67.5
Q ss_pred ccccChHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHH
Q psy3301 165 DKQELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLH 244 (608)
Q Consensus 165 ~~~~l~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~ 244 (608)
....++++..+.|+++|+.+|.|++|.|+.+||..+++. +|..+++++++.+++.+|.+ ++|.|+|+||+.++
T Consensus 26 ~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~-lg~~~~~~ei~~l~~~~D~d------~dG~I~~~EF~~~m 98 (100)
T 2lv7_A 26 RPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRS-LGYMPNEVELEVIIQRLDMD------GDGQVDFEEFVTLL 98 (100)
T ss_dssp SCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHH-HTCCCCTTTHHHHHHHHCSS------CSSSBCHHHHHHHT
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHH-hCCCCCHHHHHHHHHHHCCC------CCCeEeHHHHHHHh
Confidence 345678888999999999999999999999999999997 79999999999999999998 89999999999875
No 452
>4drw_A Protein S100-A10/annexin A2 chimeric protein; atypical EF-hand, heteropentameric complex, membrane repair; 3.50A {Homo sapiens}
Probab=98.89 E-value=3.1e-09 Score=91.39 Aligned_cols=72 Identities=8% Similarity=0.162 Sum_probs=64.4
Q ss_pred ChHHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcc----cCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHH
Q psy3301 169 LTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRC----FDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLH 244 (608)
Q Consensus 169 l~~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~----~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~ 244 (608)
..+.+.+.|.++|..+|.| +|.|+..||..++++. +|...++++++++++.+|.+ +||.|+|+||+.++
T Consensus 9 ~lE~~ie~l~~~F~~yd~d-dG~Is~~EL~~~l~~~~~~~l~~~~~~~~v~~~i~~~D~d------~DG~IdF~EF~~lm 81 (121)
T 4drw_A 9 QMEHAMETMMFTFHKFAGD-KGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQC------RDGKVGFQSFFSLI 81 (121)
T ss_dssp SHHHHHHHHHHTTGGGSCT-TCSCCHHHHHHHTTTSCHHHHTTSSCTTHHHHHHHHHCTT------CSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC-CCEEcHHHHHHHHHHHhhhhcccCCCHHHHHHHHHHHcCC------CCCcCcHHHHHHHH
Confidence 3567789999999999998 8999999999998763 58888999999999999999 89999999999888
Q ss_pred HHH
Q psy3301 245 NLF 247 (608)
Q Consensus 245 ~~~ 247 (608)
...
T Consensus 82 ~~l 84 (121)
T 4drw_A 82 AGL 84 (121)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 453
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=98.88 E-value=2.3e-10 Score=94.07 Aligned_cols=70 Identities=16% Similarity=0.297 Sum_probs=61.8
Q ss_pred cCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCCCCCCCCCccccccceecCCCCccchhhHHhHhhhh
Q psy3301 290 LSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPECPPWTDREMRAMVATNSKGWITMQGFLCYWILT 361 (608)
Q Consensus 290 Ls~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~~ 361 (608)
|++...+.++++|+.||+|+||+|+.+|++.+++..| ....+..+++..+|.|++|.|+|+||+..+...
T Consensus 3 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g--~~~~~~~~i~~~~D~d~dG~i~~~EF~~~~~~~ 72 (92)
T 1fi6_A 3 ITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSK--LPILELSHIWELSDFDKDGALTLDEFCAAFHLV 72 (92)
T ss_dssp CCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHS--SCHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Confidence 5677789999999999999999999999999999887 555557888899999999999999999987544
No 454
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.88 E-value=6.9e-10 Score=108.47 Aligned_cols=144 Identities=12% Similarity=0.031 Sum_probs=80.5
Q ss_pred CCceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCC--CcCCCceEec-----ceEeCC-----------cceeEee
Q psy3301 406 TRNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSP--VECDPPYTIN-----TTTVYG-----------QEKYLVL 467 (608)
Q Consensus 406 ~r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~--~~~~~~~~i~-----~~~v~G-----------qe~~~~l 467 (608)
....++|+|+|.+|||||||++++++..+.....++.+. ......+.++ -++.+| ++.+...
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~ 105 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRC 105 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHH
Confidence 345799999999999999999999998886554332122 1111122233 234466 2333322
Q ss_pred eeccccc------ccccCCCCccc----ccc---ccc-CCCCCcEEEEEeCCCCCcchhcc------cccHHHHHHHcCC
Q psy3301 468 KEILVRD------EQLPVLLPVDV----DCD---KYF-STSKIPVMLVAGKSDMPRARQDY------LMQPDIFCETHKL 527 (608)
Q Consensus 468 ~~~~~~~------v~d~~l~~~~~----~~~---~~~-~~~~~p~ilVgnK~DL~~~~~~~------~~~~~~~~~~~~~ 527 (608)
...++++ |+| ++.... .+. +.+ .....|+++|+||+|+...+.+. .+...+++++++.
T Consensus 106 ~~~~~~~~~~~l~v~d--~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~ 183 (239)
T 3lxx_A 106 ILLTSPGPHALLLVVP--LGRYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGD 183 (239)
T ss_dssp HHHTTTCCSEEEEEEE--TTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHSS
T ss_pred HHhcCCCCcEEEEEee--CCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCC
Confidence 2222222 555 433221 111 111 12346999999999987554332 2357888888887
Q ss_pred CCceEEc--c-----CCCHHHHHHHHHHHHcC
Q psy3301 528 SPAHSFS--A-----ANNDREVFVKLATMAAF 552 (608)
Q Consensus 528 ~~~~~~S--~-----~~~v~e~F~~l~~~a~~ 552 (608)
. ++.++ + ..++.++|..+..+...
T Consensus 184 ~-~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 184 R-YCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp S-EEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred E-EEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 5 56565 2 26899999999887743
No 455
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=98.88 E-value=5.4e-10 Score=95.31 Aligned_cols=74 Identities=15% Similarity=0.184 Sum_probs=63.4
Q ss_pred CccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCCCCCCCCCccccccceecCCCCccchhhHHhHhhhh
Q psy3301 286 CTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPECPPWTDREMRAMVATNSKGWITMQGFLCYWILT 361 (608)
Q Consensus 286 ~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~~ 361 (608)
....|++...+.++++|+.||+|+||+|+.+||+.++...+ ....+...+++.+|.|++|.|+|+||+..+...
T Consensus 4 ~~w~ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~--~~~~~~~~i~~~~D~d~dG~I~~~EF~~~~~~~ 77 (111)
T 2kgr_A 4 AEWAVPQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQSS--LPQAQLASIWNLSDIDQDGKLTAEEFILAMHLI 77 (111)
T ss_dssp CCSSSCHHHHHHHHHHHHTTSCSSCCEEEHHHHHHHHHTTC--CCHHHHHHHHHHHCSSCCSEEEHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHhCC--CCHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHH
Confidence 34467888899999999999999999999999999998543 444557788899999999999999999987654
No 456
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Probab=98.88 E-value=4.2e-09 Score=96.99 Aligned_cols=63 Identities=17% Similarity=0.256 Sum_probs=44.1
Q ss_pred HHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHH
Q psy3301 175 KALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLH 244 (608)
Q Consensus 175 ~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~ 244 (608)
..++++|..+|.|++|.|+.+|+..++.. +|..+++++++.++..++.+ ++|.|++++|+.++
T Consensus 74 ~~~~~~F~~~D~d~~G~i~~~el~~~l~~-~g~~~~~~~~~~~~~~~d~~------~dg~i~~~eF~~~~ 136 (172)
T 2znd_A 74 TDWQNVFRTYDRDNSGMIDKNELKQALSG-FGYRLSDQFHDILIRKFDRQ------GRGQIAFDDFIQGC 136 (172)
T ss_dssp HHHHHHHHHHCTTCSSEECHHHHHHHHHH-TTCCCCHHHHHHHHHHHCTT------CSSSEEHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCccCHHHHHHHHHH-cCCCCCHHHHHHHHHHhCCC------CCCcCcHHHHHHHH
Confidence 45667777777777777777777777665 56667777777777777666 67777777777554
No 457
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=98.87 E-value=3.2e-10 Score=92.99 Aligned_cols=72 Identities=21% Similarity=0.211 Sum_probs=64.5
Q ss_pred CccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCCCCCCCCCccccccceecCCCCccchhhHHhHhh
Q psy3301 286 CTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPECPPWTDREMRAMVATNSKGWITMQGFLCYWI 359 (608)
Q Consensus 286 ~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~ 359 (608)
...+|++...+.++.+|+.||+|+||+|+.+||+.+++.+| ..+.+...++..+|.|++|.|+|+||+..|.
T Consensus 17 ~~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g--~~~~~~~~~~~~~D~d~dg~I~~~EF~~~~~ 88 (91)
T 2pmy_A 17 QGADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELR--VRPADAEAVFQRLDADRDGAITFQEFARGFL 88 (91)
T ss_dssp --CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTT--CCHHHHHHHHHHHCTTCSSEECHHHHTHHHH
T ss_pred HhccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcC--cCHHHHHHHHHHhCCCCCCCEeHHHHHHHHH
Confidence 44688999999999999999999999999999999999998 6666678899999999999999999999875
No 458
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic, ER, golgi, transport, disulfide bond, endopla reticulum, ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A 3lcp_C
Probab=98.87 E-value=2.9e-10 Score=101.80 Aligned_cols=101 Identities=15% Similarity=0.059 Sum_probs=48.0
Q ss_pred HHHHHHHHHhcCCCccCCCCcchhhHHHHHHHHHhcCCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhH
Q psy3301 215 EDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKG 294 (608)
Q Consensus 215 ~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~~~~~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~ 294 (608)
..+...+|.+ ++|.|+++||+..+...+... + .... .
T Consensus 30 ~~~f~~~D~d------~dG~I~~~Ef~~~l~~~~~~~--~---------------------------------~~~~--~ 66 (143)
T 3a4u_B 30 FSQPGSMGLD------KNTVHDQEHIMEHLEGVINKP--E---------------------------------AEMS--P 66 (143)
T ss_dssp --------------------------------------------------------------------------CCC--H
T ss_pred HHHHHHhCCC------CCCcCcHHHHHHHHHHHhccc--c---------------------------------cccC--H
Confidence 3456677777 799999999997654322110 0 0111 2
Q ss_pred HHHHHHHHhhhcCCCCCCCCHHHHHHhhccCCC--------CCCCCCccccc----cceecCCCCccchhhHHhHh
Q psy3301 295 QQFLTTLFYRFDKDGDGALSPEEQARLFSLCPP--------ECPPWTDREMR----AMVATNSKGWITMQGFLCYW 358 (608)
Q Consensus 295 ~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~~--------~~~~~~~~~~~----~~~d~~~~g~i~~~ef~~~w 358 (608)
.+.++.+|+.||+|+||+|+.+||+.++..++. ...+.+..+++ +.+|.|+||.|+|+||+..+
T Consensus 67 ~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~g~~~s~~e~~~~~~~~f~~~D~d~dG~Is~~EF~~~~ 142 (143)
T 3a4u_B 67 QELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDGVLRDDDKNNDGYIDYAEFAKSL 142 (143)
T ss_dssp HHHHHHHHHHTCTTCSSCEEHHHHHHTCC-------------CCHHHHHHHHHHHHHHHCTTCSSEECHHHHHC--
T ss_pred HHHHHHHHHHhCCCCCCccCHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHcCCCCCCcEeHHHHHHHH
Confidence 467889999999999999999999999988731 12222233333 78899999999999999765
No 459
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=98.86 E-value=6e-10 Score=90.12 Aligned_cols=73 Identities=26% Similarity=0.358 Sum_probs=63.0
Q ss_pred cccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCCCCCCCCCccccccceecCCCCccchhhHHhHhhhh
Q psy3301 288 AELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPECPPWTDREMRAMVATNSKGWITMQGFLCYWILT 361 (608)
Q Consensus 288 ~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~~ 361 (608)
.++++...+.++.+|+.||+|++|+|+.+||+.+++.+| ...+.+...++..+|.|++|.|+|+||+..+.-.
T Consensus 3 ~~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g-~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~~ 75 (86)
T 2opo_A 3 AEDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLG-SVTPDEVRRMMAEIDTDGDGFISFDEFTDFARAN 75 (86)
T ss_dssp ---CHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHTTT-TCCHHHHHHHHHHHCTTCSSEECHHHHHHHHHHC
T ss_pred ccCCHhhHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHcC-CCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHC
Confidence 467888899999999999999999999999999999987 4455567889999999999999999999987654
No 460
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=98.86 E-value=6.9e-10 Score=90.67 Aligned_cols=74 Identities=22% Similarity=0.254 Sum_probs=64.7
Q ss_pred cccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCCCCCCCCCccccccceecCCCCccchhhHHhHhhhh
Q psy3301 288 AELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPECPPWTDREMRAMVATNSKGWITMQGFLCYWILT 361 (608)
Q Consensus 288 ~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~~ 361 (608)
..|++...+.++.+|+.||+|++|+|+.+||+.++..+|....+.+...++..+|.|++|.|+|+||+..|.-.
T Consensus 12 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~~~D~~~dg~i~~~eF~~~~~~~ 85 (90)
T 1avs_A 12 AFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQ 85 (90)
T ss_dssp HHBCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTCCSSEEHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHH
Confidence 36888889999999999999999999999999999998743444557888999999999999999999988643
No 461
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase activating protein, GCAP, GCAP3, GCAP-3, lyase activator; 3.00A {Homo sapiens}
Probab=98.86 E-value=1.1e-08 Score=97.86 Aligned_cols=135 Identities=16% Similarity=0.126 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHHHhc
Q psy3301 171 PECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQR 250 (608)
Q Consensus 171 ~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~~~~ 250 (608)
+.....+.++|..+|.|++|.|+..|+..++.. ++...+.+++..++..+|.+ ++|.|++++|..++......
T Consensus 53 ~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~~-~~~~~~~~~l~~~F~~~D~d------~~G~I~~~E~~~~l~~~~~~ 125 (211)
T 2ggz_A 53 QKANKHIDQVYNTFDTNKDGFVDFLEFIAAVNL-IMQEKMEQKLKWYFKLYDAD------GNGSIDKNELLDMFMAVQAL 125 (211)
T ss_dssp HHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHH-HSCSSHHHHHHHHHHHHCTT------CSSSBCHHHHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHcCCCCCeEeHHHHHHHHHH-hccCchHHHHHHHHHHhcCC------CCCcCcHHHHHHHHHHHHhh
Confidence 344566899999999999999999999999886 46667788899999999988 89999999999776532110
Q ss_pred CCCcchhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCCCCCC
Q psy3301 251 GRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPECP 330 (608)
Q Consensus 251 ~~~e~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~~~~~ 330 (608)
+ +. ..++. .+.+..+|+.+|.|+||.|+.+|+..++...+
T Consensus 126 ~---------------------------------~~-~~~~~--~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~~~~---- 165 (211)
T 2ggz_A 126 N---------------------------------GQ-QTLSP--EEFINLVFHKIDINNDGELTLEEFINGMAKDQ---- 165 (211)
T ss_dssp S---------------------------------CC-CSCTH--HHHHHHHHHHHCTTCSSSBCHHHHHHHHHTTT----
T ss_pred c---------------------------------CC-ccccH--HHHHHHHHHHhCCCCCCCCcHHHHHHHHHhCH----
Confidence 0 00 11121 35578899999999999999999999998543
Q ss_pred CCCccccccceecCCCCccchhhHHhHhhhh
Q psy3301 331 PWTDREMRAMVATNSKGWITMQGFLCYWILT 361 (608)
Q Consensus 331 ~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~~ 361 (608)
+..+++.. .++|++|+..+.-.
T Consensus 166 --~~~~~~~~-------~~d~~~f~~~~~~~ 187 (211)
T 2ggz_A 166 --DLLEIVYK-------SFDFSNVLRVICNG 187 (211)
T ss_dssp --TTHHHHHH-------HSCTTHHHHHHHHH
T ss_pred --HHHHHHhc-------cCCHHHHHHHHhcC
Confidence 23444442 45588888887743
No 462
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=98.85 E-value=3.3e-10 Score=89.49 Aligned_cols=71 Identities=18% Similarity=0.181 Sum_probs=61.1
Q ss_pred cCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCCCCCCCCCccccccceecCCCCccchhhHHhHhhh
Q psy3301 290 LSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPECPPWTDREMRAMVATNSKGWITMQGFLCYWIL 360 (608)
Q Consensus 290 Ls~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~ 360 (608)
|++...+.++.+|+.||+|++|+|+.+|++.+++.+|....+.+...++..+|.|++|.|+|++|+..|.-
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 71 (77)
T 2joj_A 1 LSEEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREGNGYIGFDDFLDIMTE 71 (77)
T ss_dssp CCHHHHHHHHHHHHHHCCSSSSEEEHHHHHHHHHHHTCCCHHHHHHHHHHHHCCSSSSEEEHHHHHHHHTH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 46677889999999999999999999999999999873333355778889999999999999999998753
No 463
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A
Probab=98.85 E-value=4.3e-09 Score=96.18 Aligned_cols=92 Identities=17% Similarity=0.148 Sum_probs=70.8
Q ss_pred HHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHHHhcCCCc
Q psy3301 175 KALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQRGRSH 254 (608)
Q Consensus 175 ~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~~~~~~~e 254 (608)
..++.+|+.+|.|++|.|+.+|+..+++. +|.++++++++.++..+ + ++|.|+|++|+.++..
T Consensus 70 ~~~~~~F~~~D~d~~G~i~~~el~~~l~~-~g~~~~~~~~~~~~~~~--d------~dg~i~~~eF~~~~~~-------- 132 (165)
T 1k94_A 70 NAWKENFMTVDQDGSGTVEHHELRQAIGL-MGYRLSPQTLTTIVKRY--S------KNGRIFFDDYVACCVK-------- 132 (165)
T ss_dssp HHHHHHHHHHCTTCCSBCCHHHHHHHHHH-TTCCCCHHHHHHHHHHH--C------BTTBCBHHHHHHHHHH--------
T ss_pred HHHHHHHHHhCCCCCceECHHHHHHHHHH-hCCCCCHHHHHHHHHHh--C------CCCeEcHHHHHHHHHH--------
Confidence 56778888888888888888888888876 67778888888888877 4 5788888888866532
Q ss_pred chhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhcc
Q psy3301 255 TTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSL 324 (608)
Q Consensus 255 ~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~ 324 (608)
.+.+..+|+.||+|++|.|+.+ +++.+..
T Consensus 133 ----------------------------------------~~~~~~~F~~~D~d~~G~i~~~-~~~~l~~ 161 (165)
T 1k94_A 133 ----------------------------------------LRALTDFFRKRDHLQQGSANFI-YDDFLQG 161 (165)
T ss_dssp ----------------------------------------HHHHHHHHHTTCTTCCSEEEEE-HHHHHHH
T ss_pred ----------------------------------------HHHHHHHHHHhCCCCCCeEeee-HHHHHHH
Confidence 1346677888888888888877 7776643
No 464
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor supressor, CAL binding protein; 1.30A {Homo sapiens} SCOP: a.39.1.2 PDB: 2rgi_A 4duq_A
Probab=98.85 E-value=7.5e-10 Score=91.97 Aligned_cols=68 Identities=21% Similarity=0.326 Sum_probs=56.0
Q ss_pred hHHHHHHHHHhhhc-CCCCC-CCCHHHHHHhhcc-CC----CCCCCCCccccccceecCCCCccchhhHHhHhhh
Q psy3301 293 KGQQFLTTLFYRFD-KDGDG-ALSPEEQARLFSL-CP----PECPPWTDREMRAMVATNSKGWITMQGFLCYWIL 360 (608)
Q Consensus 293 ~~~~~l~~~F~~fD-~d~dG-~ls~~El~~~~~~-~~----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~ 360 (608)
.....|+++|+.|| +|+|| +|+.+||+.+++. +| ....+.+++++++.+|.|+||.|+|+||+....-
T Consensus 8 ~~i~~l~~~F~~fd~~dgdgG~Is~~EL~~~l~~~lg~~l~~~~~~~ev~~~i~~~D~d~DG~Idf~EF~~~~~~ 82 (98)
T 3n22_A 8 QALAVLVTTFHKYSSQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMGSLDENSDQQVDFQEYAVFLAL 82 (98)
T ss_dssp HHHHHHHHHHHHHHTTSSSTTSBCHHHHHHHHHHHCHHHHCSSCCHHHHHHHHHHHCTTSSSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 34788999999998 89995 9999999999986 33 2233455789999999999999999999886543
No 465
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A
Probab=98.84 E-value=1.2e-09 Score=92.90 Aligned_cols=69 Identities=14% Similarity=0.263 Sum_probs=57.9
Q ss_pred HhHHHHHHHHHhhhc-CCCCC-CCCHHHHHHhhcc-----CCCCCCCCCccccccceecCCCCccchhhHHhHhhh
Q psy3301 292 DKGQQFLTTLFYRFD-KDGDG-ALSPEEQARLFSL-----CPPECPPWTDREMRAMVATNSKGWITMQGFLCYWIL 360 (608)
Q Consensus 292 ~~~~~~l~~~F~~fD-~d~dG-~ls~~El~~~~~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~ 360 (608)
....+.|+++|+.|| +|+|| +|+.+||+.+++. +|....+.++.++++.+|.|+||.|+|+||+..+.-
T Consensus 18 ~~~~~~l~~aF~~fD~~dgdGG~Is~~EL~~~l~~~l~~~lg~~~t~~ev~~li~~~D~dgdG~Idf~EF~~~m~~ 93 (113)
T 2lnk_A 18 EKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSC 93 (113)
T ss_dssp HHHHHHHHHHHHHTTTTTSCTTCBCHHHHHHHHHHHCGGGGTTCCCTTHHHHHHHHHCSSSSSCBCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcccCCCCCEECHHHHHHHHHHHcchhcCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHH
Confidence 345788999999999 89997 9999999999975 443334456789999999999999999999987653
No 466
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S 3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Probab=98.84 E-value=3.2e-09 Score=97.92 Aligned_cols=48 Identities=10% Similarity=0.153 Sum_probs=23.5
Q ss_pred HHHHHhhhcCCCCCCCCHHHHHHhhccCCCCCCCCCccccccceecCCCCccchh
Q psy3301 298 LTTLFYRFDKDGDGALSPEEQARLFSLCPPECPPWTDREMRAMVATNSKGWITMQ 352 (608)
Q Consensus 298 l~~~F~~fD~d~dG~ls~~El~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ 352 (608)
+..+|+.+| |+||.|+.+|+..++.... ....+++.+|.|++|.||.+
T Consensus 115 ~~~~~~~~d-d~dg~i~~~eF~~~~~~~~------~~~~~F~~~D~d~~G~i~~~ 162 (173)
T 1alv_A 115 YSMIIRRYS-DEGGNMDFDNFISCLVRLD------AMFRAFKSLDKDGTGQIQVN 162 (173)
T ss_dssp HHHHHHHHT-CSSSCBCHHHHHHHHHHHH------HHHHHHHHHSSSCCSEEEEE
T ss_pred HHHHHHHhc-CCCCcCcHHHHHHHHHHHH------HHHHHHHHhCCCCCCeecHh
Confidence 444455555 5555555555555544431 13344445555555555544
No 467
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5
Probab=98.83 E-value=1.4e-10 Score=94.01 Aligned_cols=63 Identities=17% Similarity=0.167 Sum_probs=54.2
Q ss_pred HHHHHHHhhhcCCCCCCCCHHHHHHhhccCCCCCCCCCccccccceecCCCCccchhhHHhHh
Q psy3301 296 QFLTTLFYRFDKDGDGALSPEEQARLFSLCPPECPPWTDREMRAMVATNSKGWITMQGFLCYW 358 (608)
Q Consensus 296 ~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w 358 (608)
+.++.+|+.||+|++|+|+.+||+.++..+|....+.+...+++.+|.|++|.|+|++|+..+
T Consensus 23 ~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~ 85 (87)
T 1s6j_A 23 GGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEFIAAT 85 (87)
T ss_dssp TTTTTHHHHHCTTCSSCEEHHHHHHHHHTTTSSCCHHHHHHHHHHHCTTCSSEECHHHHTTCC
T ss_pred HHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 346777999999999999999999999999744444557788999999999999999998765
No 468
>4drw_A Protein S100-A10/annexin A2 chimeric protein; atypical EF-hand, heteropentameric complex, membrane repair; 3.50A {Homo sapiens}
Probab=98.83 E-value=1.6e-09 Score=93.27 Aligned_cols=70 Identities=17% Similarity=0.219 Sum_probs=59.3
Q ss_pred HhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhcc-----CCCCCCCCCccccccceecCCCCccchhhHHhHhhhhh
Q psy3301 292 DKGQQFLTTLFYRFDKDGDGALSPEEQARLFSL-----CPPECPPWTDREMRAMVATNSKGWITMQGFLCYWILTT 362 (608)
Q Consensus 292 ~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~~~ 362 (608)
+...+.|+.+|.+||.| ||+||.+||+.+++. .+....+.++.++++.+|.|+||.|+|+||+.+..-.+
T Consensus 11 E~~ie~l~~~F~~yd~d-dG~Is~~EL~~~l~~~~~~~l~~~~~~~~v~~~i~~~D~d~DG~IdF~EF~~lm~~l~ 85 (121)
T 4drw_A 11 EHAMETMMFTFHKFAGD-KGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVGFQSFFSLIAGLT 85 (121)
T ss_dssp HHHHHHHHHTTGGGSCT-TCSCCHHHHHHHTTTSCHHHHTTSSCTTHHHHHHHHHCTTCSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC-CCEEcHHHHHHHHHHHhhhhcccCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHH
Confidence 34478899999999998 899999999999987 34334556678999999999999999999999876554
No 469
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural genomics, PSI-B protein structure initiative, NEW YORK structural genomics consortium; 1.54A {Homo sapiens} PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Probab=98.83 E-value=1.1e-09 Score=90.14 Aligned_cols=68 Identities=15% Similarity=0.265 Sum_probs=55.6
Q ss_pred HHHHHHHHHhhhc-CCCC-CCCCHHHHHHhhcc-CCC----CCCCCCccccccceecCCCCccchhhHHhHhhhh
Q psy3301 294 GQQFLTTLFYRFD-KDGD-GALSPEEQARLFSL-CPP----ECPPWTDREMRAMVATNSKGWITMQGFLCYWILT 361 (608)
Q Consensus 294 ~~~~l~~~F~~fD-~d~d-G~ls~~El~~~~~~-~~~----~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~~ 361 (608)
..+.|+++|+.|| +||| |+|+.+||+.+++. +|. +..+.+++++++.+|.|+||.|+|+||+....-.
T Consensus 8 ~~~~l~~~F~~fd~~dg~~G~Is~~EL~~~l~~~lg~~l~~~~~~~ev~~~i~~~D~d~DG~Idf~EF~~~~~~~ 82 (93)
T 4eto_A 8 ALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSCI 82 (93)
T ss_dssp HHHHHHHHHHHHHTSSSSTTSBCHHHHHHHHHHHCGGGC---CCHHHHHHHHHHHCTTSSSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccCCCCCeECHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHH
Confidence 4688999999998 6885 89999999999985 541 1233457899999999999999999999876543
No 470
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=98.83 E-value=1.3e-09 Score=91.87 Aligned_cols=70 Identities=11% Similarity=0.138 Sum_probs=62.4
Q ss_pred ccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCCCCCCCCCccccccceecCCCCccchhhHHhHhhhh
Q psy3301 289 ELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPECPPWTDREMRAMVATNSKGWITMQGFLCYWILT 361 (608)
Q Consensus 289 eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~~ 361 (608)
.+++...+.++++|+.||+ +||+|+.+|++.+|...| ....+..++++.+|.|+||.|+|+||+..+.+.
T Consensus 8 ~ls~~e~~~~~~~F~~~D~-~dG~Is~~el~~~l~~~g--l~~~el~~i~~~~D~d~dG~id~~EF~~~m~~~ 77 (106)
T 1eh2_A 8 AVKPEDKAKYDAIFDSLSP-VNGFLSGDKVKPVLLNSK--LPVDILGRVWELSDIDHDGMLDRDEFAVAMFLV 77 (106)
T ss_dssp SSCHHHHHHHHHHHTTSCC-SSSCCBHHHHHHHHHTTT--CCHHHHHHHHHHHCSSCSSBCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCC-CCCeEcHHHHHHHHHHcC--CCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHH
Confidence 4678888999999999999 999999999999999987 555667889999999999999999999886543
No 471
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Probab=98.82 E-value=4e-09 Score=98.69 Aligned_cols=125 Identities=15% Similarity=0.121 Sum_probs=98.1
Q ss_pred CCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHHHhcCCCcchhHHhhhccCC
Q psy3301 187 DNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQRGRSHTTWTVLRKFGYN 266 (608)
Q Consensus 187 d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~~~~~~~e~~w~~lr~f~y~ 266 (608)
+..|.|+.+|+..+.+. + .++.++++.+...++.+. ++|.|++++|..++..... ..
T Consensus 3 ~~~~~l~~~el~~~~~~-~--~~~~~el~~~f~~~D~~~-----~~G~i~~~e~~~~l~~~~~---~~------------ 59 (190)
T 2l2e_A 3 KSQSKLSQDQLQDLVRS-T--RFDKKELQQWYKGFFKDC-----PSGHLNKSEFQKIYKQFFP---FG------------ 59 (190)
T ss_dssp CSSCCSCHHHHHHHHHH-H--CSCSHHHHHHHHHHHHHS-----CCCEECHHHHHHHHHHHCC---CS------------
T ss_pred cccccCCHHHHHHHHHh-c--CCCHHHHHHHHHHHHHhC-----CCCcCCHHHHHHHHHHhCC---CC------------
Confidence 45788999999999876 4 468999999999999871 2789999999977653210 00
Q ss_pred CCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCCCCCCCCCccccccceecCCC
Q psy3301 267 EDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPECPPWTDREMRAMVATNSK 346 (608)
Q Consensus 267 ~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 346 (608)
...+.+..+|+.+|.|++|.|+.+|+..++...+......+...+++.+|.|++
T Consensus 60 --------------------------~~~~~~~~~f~~~D~d~~G~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~d~~ 113 (190)
T 2l2e_A 60 --------------------------DPSAFAEYVFNVFDADKNGYIDFKEFICALSVTSRGELNDKLIWAFQLYDLDNN 113 (190)
T ss_dssp --------------------------CHHHHHHHHHHHHCSSSTTCEEHHHHHHHHTTSSCSCSHHHHHHHHHHHCTTSC
T ss_pred --------------------------CccHHHHHHHHHhcCCCCCeEeHHHHHHHHHHHcCCCHHHHHHHHHhHccCCCC
Confidence 013568889999999999999999999999888622222335677888999999
Q ss_pred CccchhhHHhHhhh
Q psy3301 347 GWITMQGFLCYWIL 360 (608)
Q Consensus 347 g~i~~~ef~~~w~~ 360 (608)
|.|+++||...+.-
T Consensus 114 G~i~~~e~~~~~~~ 127 (190)
T 2l2e_A 114 GLISYDEMLRIVDA 127 (190)
T ss_dssp SCBCHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHH
Confidence 99999999987754
No 472
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=98.82 E-value=1.6e-09 Score=87.63 Aligned_cols=72 Identities=8% Similarity=0.031 Sum_probs=62.1
Q ss_pred cccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCCCCCCCCC---ccccccceecCCCCccchhhHHhHhhh
Q psy3301 288 AELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPECPPWT---DREMRAMVATNSKGWITMQGFLCYWIL 360 (608)
Q Consensus 288 ~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~~~~~~~~---~~~~~~~~d~~~~g~i~~~ef~~~w~~ 360 (608)
.+|++...+.++.+|..||+|++|+|+.+||+.+++.+|....+.+ ...++..+|.|++|.|+| +|+..+.-
T Consensus 6 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~d~~~~g~i~~-eF~~~~~~ 80 (86)
T 1j7q_A 6 RALGPEEKDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQTYTKRETEAIMKEARGPKGDKKNIGPE-EWLTLCSK 80 (86)
T ss_dssp CCCSSTHHHHHHHHHHHHSTTTTSCBCHHHHHHHHHHTSCCCSHHHHHHHHHHHHCSSCSSCCBCTT-HHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCCCcCCH-HHHHHHHH
Confidence 4677788899999999999999999999999999999984334455 668888999999999999 99988753
No 473
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens}
Probab=98.82 E-value=1.3e-09 Score=91.42 Aligned_cols=68 Identities=15% Similarity=0.262 Sum_probs=55.9
Q ss_pred HHHHHHHHHhhhc-CCCC-CCCCHHHHHHhhcc-CCC----CCCCCCccccccceecCCCCccchhhHHhHhhhh
Q psy3301 294 GQQFLTTLFYRFD-KDGD-GALSPEEQARLFSL-CPP----ECPPWTDREMRAMVATNSKGWITMQGFLCYWILT 361 (608)
Q Consensus 294 ~~~~l~~~F~~fD-~d~d-G~ls~~El~~~~~~-~~~----~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~~ 361 (608)
....|+++|+.|| +|+| |+|+.+||+.+++. +|. ...+.+++++++.+|.|+||.|+|+||+....-.
T Consensus 11 ~~~~l~~aF~~fD~~dgd~G~Is~~EL~~~l~~~lg~~l~~~~~~~ev~~~i~~~D~dgDG~Idf~EF~~~m~~~ 85 (104)
T 3zwh_A 11 ALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSWLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSSI 85 (104)
T ss_dssp HHHHHHHHHHHHHTSSSSTTSBCHHHHHHHHHHHCGGGSCSSCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHcchhccCCCCHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHH
Confidence 4688999999998 7886 89999999999985 541 1233457899999999999999999999876543
No 474
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.82 E-value=6.5e-10 Score=120.32 Aligned_cols=143 Identities=13% Similarity=0.091 Sum_probs=91.7
Q ss_pred EEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCC------ceEecceEeCCcceeEeeeeccccc------ccc
Q psy3301 410 YVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDP------PYTINTTTVYGQEKYLVLKEILVRD------EQL 477 (608)
Q Consensus 410 ~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~------~~~i~~~~v~Gqe~~~~l~~~~~~~------v~d 477 (608)
.+|+|+|.+++|||||+++|.+..+...+.++++.+.... ...+.-++.+|++.|..+...++.. ++|
T Consensus 5 pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVD 84 (537)
T 3izy_P 5 PVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVILVVA 84 (537)
T ss_dssp CBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECB
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEEEEE
Confidence 6899999999999999999998776555444443311111 1234556779999998888877665 566
Q ss_pred cCCCCcc--cccc--cccCCCCCcEEEEEeCCCCCcchhcc-cccHHHH---HHHcCC-CCceEEc--cCCCHHHHHHHH
Q psy3301 478 PVLLPVD--VDCD--KYFSTSKIPVMLVAGKSDMPRARQDY-LMQPDIF---CETHKL-SPAHSFS--AANNDREVFVKL 546 (608)
Q Consensus 478 ~~l~~~~--~~~~--~~~~~~~~p~ilVgnK~DL~~~~~~~-~~~~~~~---~~~~~~-~~~~~~S--~~~~v~e~F~~l 546 (608)
.++.. .... ......++|+++|+||+|+.+..... ..+..++ +..++. .+++++| ++.|++++|..|
T Consensus 85 --a~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I 162 (537)
T 3izy_P 85 --ADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEAT 162 (537)
T ss_dssp --SSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHH
T ss_pred --CCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHH
Confidence 44322 1111 23335678999999999997533211 1111111 112221 1367788 899999999999
Q ss_pred HHHHcCCC
Q psy3301 547 ATMAAFPR 554 (608)
Q Consensus 547 ~~~a~~p~ 554 (608)
...+-.+.
T Consensus 163 ~~l~~~~~ 170 (537)
T 3izy_P 163 IALAEMLE 170 (537)
T ss_dssp HHHHTTCC
T ss_pred HHhhhccc
Confidence 99875443
No 475
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.81 E-value=1.1e-09 Score=112.29 Aligned_cols=139 Identities=20% Similarity=0.214 Sum_probs=83.5
Q ss_pred eEEEEEEccCCCchHHHHHHHhcCCCC-CCCC-CCCCCC----cCCCceEecceEeCCc----ceeEeeeeccccc----
Q psy3301 409 VYVCHVIGNRSTGKTALCQSILRKHHD-SSKT-SITSPV----ECDPPYTINTTTVYGQ----EKYLVLKEILVRD---- 474 (608)
Q Consensus 409 ~~k~~viG~~gvGKTsll~~f~~~~~~-~~~~-~t~~~~----~~~~~~~i~~~~v~Gq----e~~~~l~~~~~~~---- 474 (608)
+.+|+++|.+|||||||++++++.... ..|. .|...+ .+.....+.-++++|+ ..+..|...+.+.
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 346889999999999999999987542 1221 111110 0000011222333553 2222222222221
Q ss_pred -----ccccCCCC---cc--cccc------cccC--CCCCcEEEEEeCCCCCcchhcccccHHHHHHHcCC-CCceEEc-
Q psy3301 475 -----EQLPVLLP---VD--VDCD------KYFS--TSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKL-SPAHSFS- 534 (608)
Q Consensus 475 -----v~d~~l~~---~~--~~~~------~~~~--~~~~p~ilVgnK~DL~~~~~~~~~~~~~~~~~~~~-~~~~~~S- 534 (608)
|+| +++ .+ +..+ ..+. ..++|+++|+||+|+...+ ++.+++++.++. .+++++|
T Consensus 238 d~ll~VvD--~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA 311 (342)
T 1lnz_A 238 RVIVHVID--MSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISA 311 (342)
T ss_dssp CEEEEEEE--SSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSS
T ss_pred cEEEEEEE--CCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEEC
Confidence 677 655 22 2222 1122 2589999999999997643 345778888763 2478899
Q ss_pred -cCCCHHHHHHHHHHHHcCC
Q psy3301 535 -AANNDREVFVKLATMAAFP 553 (608)
Q Consensus 535 -~~~~v~e~F~~l~~~a~~p 553 (608)
++.|++++|..|++.+...
T Consensus 312 ~tg~gi~eL~~~l~~~l~~~ 331 (342)
T 1lnz_A 312 VTREGLRELLFEVANQLENT 331 (342)
T ss_dssp CCSSTTHHHHHHHHHHHTSC
T ss_pred CCCcCHHHHHHHHHHHHhhC
Confidence 8999999999999988543
No 476
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin crosslinking, ionized calciu binding adapter molecule 2, metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B 2vtg_A
Probab=98.81 E-value=6.1e-09 Score=93.93 Aligned_cols=68 Identities=15% Similarity=0.283 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHH
Q psy3301 171 PECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHN 245 (608)
Q Consensus 171 ~~~~~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~ 245 (608)
......++++|..+|.|++|.|+..|+..+++. +|..+++++++.++..++.+ ++|.|+|++|+.++.
T Consensus 46 ~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~-~g~~~~~~e~~~l~~~~D~d------~dg~I~~~eF~~~~~ 113 (150)
T 2jjz_A 46 PEKLTAFKEKYMEFDLNNEGEIDLMSLKRMMEK-LGVPKTHLEMKKMISEVTGG------VSDTISYRDFVNMML 113 (150)
T ss_dssp HHHHHHHHHHHTTSCCCTTSSBCHHHHHHHHHH-TTCCCCHHHHHHHHHHHHTT------SCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcCcCCHHHHHHHHHH-cCCCCCHHHHHHHHHHHCCC------CCCcEeHHHHHHHHH
Confidence 577889999999999999999999999999987 79999999999999999988 799999999997764
No 477
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8
Probab=98.81 E-value=1.4e-08 Score=95.45 Aligned_cols=63 Identities=13% Similarity=0.191 Sum_probs=38.0
Q ss_pred HHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHH
Q psy3301 175 KALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLH 244 (608)
Q Consensus 175 ~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~ 244 (608)
..++++|+.+|.|++|.|+.+|+..+++. +|..+++++++.++..++.+ ++|.|+|++|+.++
T Consensus 93 ~~~~~~F~~~D~d~~G~i~~~e~~~~l~~-~g~~~~~~~~~~~~~~~D~d------~dg~i~~~eF~~~~ 155 (191)
T 1y1x_A 93 LSMREGFRKRDSSGDGRLDSNEVRAALLS-SGYQVSEQTFQALMRKFDRQ------RRGSLGFDDYVELS 155 (191)
T ss_dssp HHHHHHHHHHCTTSSSCBCHHHHHHHHHT-TSCCCCHHHHHHHHHHHCTT------CSSSBCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCeEcHHHHHHHHHH-hCCCCCHHHHHHHHHHhCCC------CCCeEeHHHHHHHH
Confidence 34556666666666666666666666554 45556666666666666555 56666666666443
No 478
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding, phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Probab=98.81 E-value=3.9e-09 Score=96.75 Aligned_cols=91 Identities=15% Similarity=0.189 Sum_probs=69.8
Q ss_pred HHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHHHhcCCCc
Q psy3301 175 KALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQRGRSH 254 (608)
Q Consensus 175 ~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~~~~~~~e 254 (608)
..++++|..+|.|++|.|+.+|+..+++. +|.++++++++.++..+ + ++|.|+|++|+.++..
T Consensus 72 ~~~~~~F~~~D~d~~G~i~~~el~~~l~~-~g~~~~~~~~~~~~~~~--d------~dg~i~~~eF~~~~~~-------- 134 (167)
T 1gjy_A 72 NGWRQHFISFDSDRSGTVDPQELQKALTT-MGFRLNPQTVNSIAKRY--S------TSGKITFDDYIACCVK-------- 134 (167)
T ss_dssp HHHHHHHHHHCTTCCSEECHHHHHHHHHT-TTCCCCHHHHHHHHHHT--C------BTTBEEHHHHHHHHHH--------
T ss_pred HHHHHHHHHhCCCCCCcCCHHHHHHHHHH-cCCCCCHHHHHHHHHHh--C------cCCcCcHHHHHHHHHH--------
Confidence 56778888888888888888888888876 67778888888888777 4 5788888888866532
Q ss_pred chhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhc
Q psy3301 255 TTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFS 323 (608)
Q Consensus 255 ~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~ 323 (608)
.+.+..+|+.||+|++|.|+.+ +++.+.
T Consensus 135 ----------------------------------------~~~~~~~F~~~D~d~~G~i~~~-~~~~l~ 162 (167)
T 1gjy_A 135 ----------------------------------------LRALTDSFRRRDSAQQGMVNFS-YDDFIQ 162 (167)
T ss_dssp ----------------------------------------HHHHHHHHHHHCTTCCSEEEEE-HHHHHH
T ss_pred ----------------------------------------HHHHHHHHHHhCCCCCeeEEee-HHHHHH
Confidence 1346777888888888888877 666554
No 479
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand, helix-loop- helix, nervous system, metal binding protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Probab=98.80 E-value=1.6e-09 Score=86.83 Aligned_cols=63 Identities=24% Similarity=0.297 Sum_probs=56.0
Q ss_pred HHHHHHHHhhhcCCCCCCCCHHHHHHhhccCC--CCCCCCCccc----cccceecCCCCccchhhHHhH
Q psy3301 295 QQFLTTLFYRFDKDGDGALSPEEQARLFSLCP--PECPPWTDRE----MRAMVATNSKGWITMQGFLCY 357 (608)
Q Consensus 295 ~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~--~~~~~~~~~~----~~~~~d~~~~g~i~~~ef~~~ 357 (608)
.+.++.+|+.||.|++|+|+.+||+.++...| ....+.+... ++..+|.|++|.|+|+||+..
T Consensus 6 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~D~~~dg~I~~~eF~~~ 74 (83)
T 1yx7_A 6 KAELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGKISKEEFLNA 74 (83)
T ss_dssp CTHHHHHHHHHSSSCSSSCSHHHHHHHHHHHTTCTTTTTTTTHHHHHHHHTTTCSSSCSCCSHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHh
Confidence 46789999999999999999999999999887 4556667788 999999999999999999954
No 480
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=98.80 E-value=9.1e-10 Score=91.76 Aligned_cols=65 Identities=14% Similarity=0.231 Sum_probs=58.0
Q ss_pred HHHHHHHHhhhcCCCCCCCCHHHHHHhhccCCCCCCCCCccccccceecCCCCccchhhHHhHhhhh
Q psy3301 295 QQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPECPPWTDREMRAMVATNSKGWITMQGFLCYWILT 361 (608)
Q Consensus 295 ~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~~ 361 (608)
.+.++++|+.||+|+||+|+.+|++.+|+..| ....+..++++.+|.|++|.|+|+||+..+.+.
T Consensus 10 ~~~~~~~F~~~D~d~dG~Is~~el~~~l~~~~--l~~~~l~~i~~~~D~d~dG~i~~~EF~~~~~~~ 74 (99)
T 1qjt_A 10 NPVYEKYYRQVEAGNTGRVLALDAAAFLKKSG--LPDLILGKIWDLADTDGKGVLSKQEFFVALRLV 74 (99)
T ss_dssp CTHHHHHHHHHCCTTSSCCCSHHHHHHHHTSS--SCHHHHHHHHHHHCCSSSSSCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHHHHcC--CCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHH
Confidence 45789999999999999999999999999987 555557889999999999999999999987655
No 481
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.80 E-value=1.4e-09 Score=103.65 Aligned_cols=142 Identities=11% Similarity=0.033 Sum_probs=78.8
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceE----ecceEeCCcce----------eEeeeeccc
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYT----INTTTVYGQEK----------YLVLKEILV 472 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~----i~~~~v~Gqe~----------~~~l~~~~~ 472 (608)
...++++++|++|||||||++++++..+...+.++++.+.....+. +.-++.+|+.. |......++
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 103 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYL 103 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcccccCHHHHHHHHHHHHHHH
Confidence 4458999999999999999999999876544455555521111111 11233466532 211111111
Q ss_pred c---c------ccccCCCCcc----cccccccCCCCCcEEEEEeCCCCCcc--hhcccccHHHHHHHcCC-CCceEEc--
Q psy3301 473 R---D------EQLPVLLPVD----VDCDKYFSTSKIPVMLVAGKSDMPRA--RQDYLMQPDIFCETHKL-SPAHSFS-- 534 (608)
Q Consensus 473 ~---~------v~d~~l~~~~----~~~~~~~~~~~~p~ilVgnK~DL~~~--~~~~~~~~~~~~~~~~~-~~~~~~S-- 534 (608)
. . ++| ++... .....+....++|+++|+||+|+... +++....+..++.+.+. ...+++|
T Consensus 104 ~~~~~~~~~~~v~d--~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal 181 (210)
T 1pui_A 104 EKRQSLQGLVVLMD--IRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSL 181 (210)
T ss_dssp HHCTTEEEEEEEEE--TTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTT
T ss_pred HhhhcccEEEEEEE--CCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeec
Confidence 1 1 455 43322 11223333467999999999998754 33334566677776653 2256677
Q ss_pred cCCCHHHHHHHHHHHH
Q psy3301 535 AANNDREVFVKLATMA 550 (608)
Q Consensus 535 ~~~~v~e~F~~l~~~a 550 (608)
++.+++++|..|.+.+
T Consensus 182 ~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 182 KKQGVDKLRQKLDTWF 197 (210)
T ss_dssp TTBSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 8999999999998876
No 482
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.79 E-value=6.5e-09 Score=106.75 Aligned_cols=134 Identities=17% Similarity=0.124 Sum_probs=83.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHc------CCCCCc-CCCCCc--------------------ceEec-C---------
Q psy3301 8 RRNVRILLLGDRHVGKTSLILSLVS------EEFPEL-VPSKAE--------------------EITIP-P--------- 50 (608)
Q Consensus 8 ~~~~kI~lvG~~~vGKTSLi~~l~~------~~~~~~-~~~~~~--------------------~~~i~-~--------- 50 (608)
.+...++|+|++|+|||||++.+.+ ++.... ..+... ...+. .
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~ 132 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV 132 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccch
Confidence 4567899999999999999999983 221100 000000 00000 0
Q ss_pred ---------ccCCCceeEEEEeCCCCCCChHHHHHHHHhcCcEEEEEEcCChhhHHHHHHhHHHHHhhhccCCCCcEEEE
Q psy3301 51 ---------DVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLV 121 (608)
Q Consensus 51 ---------~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~iilV~d~~~~~s~~~~~~~~~~~i~~~~~~~~~piilv 121 (608)
.+...+..+.|+||+|..+... .....+|++++|+|+...+..+.+. .. + ..+|.+++
T Consensus 133 tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~-~~---i------~~~~~ivv 199 (337)
T 2qm8_A 133 AAKTRETMLLCEAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIK-KG---I------FELADMIA 199 (337)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CC-TT---H------HHHCSEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHH-HH---H------hccccEEE
Confidence 0112467899999999766533 2357899999999986543322111 00 1 12466888
Q ss_pred EeCcCCCCC-------------------------C-C-cccCcccCcCHHHHHHHHHHHH
Q psy3301 122 GNKVDLVDY-------------------------S-T-VESSAKTLKNISEMFYYAQKAV 154 (608)
Q Consensus 122 ~nK~Dl~~~-------------------------~-~-~e~SAk~~~~i~~lf~~l~~~i 154 (608)
.||+|+... . . +.+||+++.|++++++.+.+..
T Consensus 200 lNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 200 VNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp EECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred EEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 899996421 1 1 6799999999999999988765
No 483
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2ju0_A
Probab=98.79 E-value=7.3e-09 Score=96.85 Aligned_cols=125 Identities=18% Similarity=0.243 Sum_probs=97.7
Q ss_pred CCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHHHhcCCCcchhHHhhhccCC
Q psy3301 187 DNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQRGRSHTTWTVLRKFGYN 266 (608)
Q Consensus 187 d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~~~~~~~e~~w~~lr~f~y~ 266 (608)
++.+.|+.+++..+.+. ..++++++..+.+.++.+ . ++|.|++++|..++......+..
T Consensus 3 ~~~~~l~~~~l~~l~~~---~~~~~~~i~~~~~~fd~~--~---~~G~i~~~e~~~~l~~~~~~~~~------------- 61 (190)
T 1fpw_A 3 AKTSKLSKDDLTCLKQS---TYFDRREIQQWHKGFLRD--C---PSGQLAREDFVKIYKQFFPFGSP------------- 61 (190)
T ss_dssp CCSCCSTTHHHHHHTTT---CCSTHHHHHHHHHHHHHH--C---TTCCEEHHHHHHHHHHHCTTSCC-------------
T ss_pred cccCCCCHHHHHHHHHh---cCCCHHHHHHHHHHHHHH--C---CCCcCcHHHHHHHHHHHcCCCCc-------------
Confidence 45678999999999875 367999999999999886 1 48899999999776532111000
Q ss_pred CCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCCCCCCCCCccccccceecCCC
Q psy3301 267 EDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPECPPWTDREMRAMVATNSK 346 (608)
Q Consensus 267 ~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 346 (608)
...+..+|+.||.|++|.|+.+|+..++...+......+...+++.+|.|++
T Consensus 62 ----------------------------~~~~~~~f~~~D~d~~G~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~d~~ 113 (190)
T 1fpw_A 62 ----------------------------EDFANHLFTVFDKDNNGFIHFEEFITVLSTTSRGTLEEKLSWAFELYDLNHD 113 (190)
T ss_dssp ----------------------------SHHHHHHHHTCCSSCSSEECHHHHHHHHHHHSCCCSTHHHHHHHHHHCSSCS
T ss_pred ----------------------------HHHHHHHHHHHCCCCCCcEeHHHHHHHHHHHccCCcHHHHHHHHHHhcCCCC
Confidence 1357889999999999999999999999877632333346778889999999
Q ss_pred CccchhhHHhHhhh
Q psy3301 347 GWITMQGFLCYWIL 360 (608)
Q Consensus 347 g~i~~~ef~~~w~~ 360 (608)
|.|+++||...+.-
T Consensus 114 G~i~~~ef~~~~~~ 127 (190)
T 1fpw_A 114 GYITFDEMLTIVAS 127 (190)
T ss_dssp SEEEHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHH
Confidence 99999999987654
No 484
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.78 E-value=2.5e-09 Score=110.82 Aligned_cols=142 Identities=15% Similarity=0.066 Sum_probs=78.0
Q ss_pred EEEEEccCCCchHHHHHHHhcCCCCCCCCCCCCCCcCCCceEecce-----EeCCc---------ceeEeeeecc-ccc-
Q psy3301 411 VCHVIGNRSTGKTALCQSILRKHHDSSKTSITSPVECDPPYTINTT-----TVYGQ---------EKYLVLKEIL-VRD- 474 (608)
Q Consensus 411 k~~viG~~gvGKTsll~~f~~~~~~~~~~~t~~~~~~~~~~~i~~~-----~v~Gq---------e~~~~l~~~~-~~~- 474 (608)
.++|+|.+|||||||++++++..+.....+..+.+.....+.+++. +.+|. +.|....+.. ..+
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~ 260 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDA 260 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCE
Confidence 4999999999999999999998763222111221111123334333 23664 2232222211 111
Q ss_pred ---ccccCCCCcc----cccc------cccCCCCCcEEEEEeCCCCCcchhc-ccccHHHHHHHcCC--CCceEEc--cC
Q psy3301 475 ---EQLPVLLPVD----VDCD------KYFSTSKIPVMLVAGKSDMPRARQD-YLMQPDIFCETHKL--SPAHSFS--AA 536 (608)
Q Consensus 475 ---v~d~~l~~~~----~~~~------~~~~~~~~p~ilVgnK~DL~~~~~~-~~~~~~~~~~~~~~--~~~~~~S--~~ 536 (608)
++| +++.. .... +.....+.|+++|+||+|+....+. ....+..+++.++. ++++++| ++
T Consensus 261 il~VvD--~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g 338 (364)
T 2qtf_A 261 LILVID--STFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKR 338 (364)
T ss_dssp EEEEEE--TTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTT
T ss_pred EEEEEE--CCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCC
Confidence 566 54432 1111 2223467899999999998653211 11233445566521 1357788 89
Q ss_pred CCHHHHHHHHHHHHcCCC
Q psy3301 537 NNDREVFVKLATMAAFPR 554 (608)
Q Consensus 537 ~~v~e~F~~l~~~a~~p~ 554 (608)
.|++++|..|.+.+..|+
T Consensus 339 ~gi~~L~~~I~~~l~~~~ 356 (364)
T 2qtf_A 339 TNLELLRDKIYQLATQLS 356 (364)
T ss_dssp BSHHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHhcccC
Confidence 999999999999886665
No 485
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.78 E-value=1.5e-09 Score=109.88 Aligned_cols=57 Identities=14% Similarity=0.155 Sum_probs=41.4
Q ss_pred CCCcEEEEEeCCCCCcchh--cccccHHHHHHHcCCCCceEEc--cCCCHHHHHHHHHHHHcC
Q psy3301 494 SKIPVMLVAGKSDMPRARQ--DYLMQPDIFCETHKLSPAHSFS--AANNDREVFVKLATMAAF 552 (608)
Q Consensus 494 ~~~p~ilVgnK~DL~~~~~--~~~~~~~~~~~~~~~~~~~~~S--~~~~v~e~F~~l~~~a~~ 552 (608)
.++|+++|+||+|+...++ +..+++.+++++++++ ++++| ++ +++++|..+++.+..
T Consensus 154 ~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~-~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 154 NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIK-IYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp TTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCC-CCCCC----------CHHHHHHHHT
T ss_pred hcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCe-EEecCCccc-cccHHHHHHHHHhhc
Confidence 5689999999999986544 3457889999999986 89999 68 999999999998754
No 486
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A 1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X* 3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A* 3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Probab=98.78 E-value=2.1e-09 Score=88.28 Aligned_cols=68 Identities=16% Similarity=0.209 Sum_probs=57.3
Q ss_pred HHHHHHHHHhhhcCCCCC---CCCHHHHHHhhcc-----CCCCCCCCCccccccceecCCCCccchhhHHhHhhhhh
Q psy3301 294 GQQFLTTLFYRFDKDGDG---ALSPEEQARLFSL-----CPPECPPWTDREMRAMVATNSKGWITMQGFLCYWILTT 362 (608)
Q Consensus 294 ~~~~l~~~F~~fD~d~dG---~ls~~El~~~~~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~~~ 362 (608)
..+.|+++|+.|| |+|| +|+.+||+.+++. +|....+.++.++++.+|.|+||.|+|+||+..|.-.+
T Consensus 7 ~~~~l~~~F~~~D-~~dG~~g~Is~~EL~~~l~~~~~~~lg~~~~~~~v~~~~~~~D~d~dG~I~f~EF~~~~~~l~ 82 (92)
T 3rm1_A 7 AVVALIDVFHQYS-GREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSNGDGECDFQEFMAFVAMIT 82 (92)
T ss_dssp HHHHHHHHHHHHH-TSSSSTTSBCHHHHHHHHHHHCTTTSCCCCSHHHHHHHHHHHCTTSSSSBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-cCCCCcCeECHHHHHHHHHHHhhhhccCcccHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHH
Confidence 4678999999999 7777 9999999999998 66333445578899999999999999999999886544
No 487
>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein; 2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A 2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A
Probab=98.78 E-value=3.3e-09 Score=89.34 Aligned_cols=73 Identities=18% Similarity=0.188 Sum_probs=59.1
Q ss_pred ccccCHhHHHHHHHHHhhhc-CCCC-CCCCHHHHHHhhcc-CCCCC-CCCCccccccceecCCCCccchhhHHhHhhh
Q psy3301 287 TAELSDKGQQFLTTLFYRFD-KDGD-GALSPEEQARLFSL-CPPEC-PPWTDREMRAMVATNSKGWITMQGFLCYWIL 360 (608)
Q Consensus 287 ~~eLs~~~~~~l~~~F~~fD-~d~d-G~ls~~El~~~~~~-~~~~~-~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~ 360 (608)
..+|... .+.|+++|+.|| +|++ |+|+.+||+.+++. +|... .+.++.++++.+|.|+||.|+|+||+..+.-
T Consensus 14 ~~~le~~-~~~l~~aF~~fD~~dg~~G~Is~~EL~~~l~~~lg~~~~~~~ev~~li~~~D~d~dG~Idf~EF~~~~~~ 90 (106)
T 2h2k_A 14 LTELEES-IETVVTTFFTFARQEGRKDSLSVNEFKELVTQQLPHLLKDVGSLDEKMKSLDVNQDSELKFNEYWRLIGE 90 (106)
T ss_dssp CCHHHHH-HHHHHHHHHHHHTSSSSTTEECHHHHHHHHHHHCTTTTTTCCCHHHHHHHHCTTCSSSEEHHHHHHHHHH
T ss_pred CCcHHHH-HHHHHHHHHHHcccCCCCCEECHHHHHHHHHHHcCcCCCCHHHHHHHHHHHCCCCCCCCcHHHHHHHHHH
Confidence 3444443 678999999999 7997 79999999999976 55222 2456889999999999999999999987654
No 488
>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP: a.39.1.2 PDB: 1ozo_A
Probab=98.78 E-value=2.2e-09 Score=88.79 Aligned_cols=68 Identities=12% Similarity=0.192 Sum_probs=54.4
Q ss_pred HHHHHHHHHhhhc-CCC-CCCCCHHHHHHhhcc-----CCCCCCCCCccccccceecCCCCccchhhHHhHhhhh
Q psy3301 294 GQQFLTTLFYRFD-KDG-DGALSPEEQARLFSL-----CPPECPPWTDREMRAMVATNSKGWITMQGFLCYWILT 361 (608)
Q Consensus 294 ~~~~l~~~F~~fD-~d~-dG~ls~~El~~~~~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~~ 361 (608)
..+.|+++|+.|| +|+ +|+|+.+||+.+++. +|....+.++.++++.+|.|+||.|+|+||+..|.-.
T Consensus 7 ~~~~l~~~F~~fD~~dgd~G~I~~~El~~~l~~~~~~~lg~~~~~~~v~~l~~~~D~d~dG~I~f~EF~~~~~~~ 81 (95)
T 1j55_A 7 AMGMIIDVFSRYSGSEGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLKDLDANGDAQVDFSEFIVFVAAI 81 (95)
T ss_dssp HHHHHHHHHHHHTTSSSCTTEECHHHHHHHHHHHSTTCC------CHHHHHHHHHCSSSSSSEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCcCCHHHHHHHHHHHhHhhcccccCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHH
Confidence 3678999999999 798 489999999999986 3422344557889999999999999999999988643
No 489
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.77 E-value=1.2e-09 Score=110.53 Aligned_cols=29 Identities=17% Similarity=0.337 Sum_probs=26.3
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCCCC
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKHHD 435 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~~~ 435 (608)
...++|+|+|++|||||||++++++..+.
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~ 52 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFL 52 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcC
Confidence 35689999999999999999999999875
No 490
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein, solution structure, backbone dynamic, structural genomics; NMR {Homo sapiens}
Probab=98.77 E-value=1.2e-09 Score=84.59 Aligned_cols=65 Identities=22% Similarity=0.273 Sum_probs=56.8
Q ss_pred HHHHHHHHhhhcCCCCCCCCHHHHHHhhccCCCCCCCCCccccccceecCCCCccchhhHHhHhh
Q psy3301 295 QQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPECPPWTDREMRAMVATNSKGWITMQGFLCYWI 359 (608)
Q Consensus 295 ~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~ 359 (608)
.+.++.+|+.||+|++|+|+.+||+.++..+|....+.+...++..+|.|++|.|+|+||+..|.
T Consensus 5 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 69 (71)
T 2b1u_A 5 LEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNYEEFARMLA 69 (71)
T ss_dssp HHHHHHHHTTSCCSSSSEEEHHHHHHHGGGTTCSSCHHHHHHHHHHCCSSSSSEEETTHHHHHHT
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHh
Confidence 46799999999999999999999999999987434444567888999999999999999998874
No 491
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=98.76 E-value=1.9e-09 Score=88.37 Aligned_cols=72 Identities=17% Similarity=0.203 Sum_probs=61.8
Q ss_pred CHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhccCCCCCCCCCccccccceecCCCCccchhhHHhHhhhhh
Q psy3301 291 SDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPECPPWTDREMRAMVATNSKGWITMQGFLCYWILTT 362 (608)
Q Consensus 291 s~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~~~ 362 (608)
++...+.++.+|+.||+|++|+|+.+||+.++..+|....+.+...++..+|.|++|.|+|++|+..|.-..
T Consensus 4 ~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~dg~i~~~eF~~~~~~~~ 75 (92)
T 2kn2_A 4 DTDAEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYEEFVKMMMTVR 75 (92)
T ss_dssp CCHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHCSSCCSSEEHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHhcc
Confidence 445578899999999999999999999999999998444445578889999999999999999999886543
No 492
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=98.75 E-value=1.6e-09 Score=82.81 Aligned_cols=64 Identities=19% Similarity=0.191 Sum_probs=55.3
Q ss_pred HHHHHHhhhcCCCCCCCCHHHHHHhhccCCCCCCCCCccccccceecCCCCccchhhHHhHhhh
Q psy3301 297 FLTTLFYRFDKDGDGALSPEEQARLFSLCPPECPPWTDREMRAMVATNSKGWITMQGFLCYWIL 360 (608)
Q Consensus 297 ~l~~~F~~fD~d~dG~ls~~El~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~ 360 (608)
.++.+|+.||+|++|.|+.+|++.++..+|....+.+...++..+|.|++|.|+|+||+..|.-
T Consensus 2 ~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~D~~~dg~i~~~ef~~~~~~ 65 (67)
T 1tiz_A 2 SAKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFTSCIEK 65 (67)
T ss_dssp THHHHHHHHCTTSSSCEEHHHHHHHHHHTCTTSCHHHHHHHHHHHCCSSSSEECHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 3778999999999999999999999999874344455678889999999999999999998753
No 493
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.74 E-value=9.1e-09 Score=106.81 Aligned_cols=92 Identities=16% Similarity=0.267 Sum_probs=50.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHcCCCCCc-CCCCC-----cceEecCc--------cCC---CceeEEEEeCCCCCC
Q psy3301 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPEL-VPSKA-----EEITIPPD--------VTP---EMVPTHIVDYSEVDQ 69 (608)
Q Consensus 7 ~~~~~kI~lvG~~~vGKTSLi~~l~~~~~~~~-~~~~~-----~~~~i~~~--------~~~---~~~~~~i~Dt~G~~~ 69 (608)
....++|+|+|.+|||||||+++|++..+... ++.++ ....++.. +.+ ....+.+|||||...
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~ 98 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK 98 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence 34578999999999999999999999865322 22221 11111110 000 023599999999876
Q ss_pred ChH-------HHHHHHHhcCcEEEEEEcCChhhHHH
Q psy3301 70 TVD-------ELTEEIQKAHVICLVYSVVDDASIDR 98 (608)
Q Consensus 70 ~~~-------~~~~~~~~ad~iilV~d~~~~~s~~~ 98 (608)
... .+..+++.+|++++|+|+++.+++.+
T Consensus 99 ~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~~ 134 (396)
T 2ohf_A 99 GAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDITH 134 (396)
T ss_dssp --------CCHHHHHHHTSSSEEEEEEC--------
T ss_pred ccchhhHHHHHHHHHHHhcCeEEEEEecCCCcchhh
Confidence 543 45678999999999999987666544
No 494
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=98.74 E-value=2.5e-09 Score=88.26 Aligned_cols=65 Identities=18% Similarity=0.212 Sum_probs=56.9
Q ss_pred HHHHHHHHhhhcCCCCCCCCHHHHHHhhccCCCCCCCCCccccccceecCCCCccchhhHHhHhh
Q psy3301 295 QQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPECPPWTDREMRAMVATNSKGWITMQGFLCYWI 359 (608)
Q Consensus 295 ~~~l~~~F~~fD~d~dG~ls~~El~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~ 359 (608)
.+.++.+|+.||+|++|+|+.+||+.+++.+|......+..++++.+|.|++|.|+|+||+..|.
T Consensus 28 ~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~~~D~d~dG~I~~~EF~~~~~ 92 (94)
T 2kz2_A 28 EEEIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT 92 (94)
T ss_dssp HHHHHHHHHHHCTTCCSCBCHHHHHHHHHHHTCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCcCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHh
Confidence 56799999999999999999999999999987434445577889999999999999999998874
No 495
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.74 E-value=1.1e-08 Score=108.28 Aligned_cols=145 Identities=12% Similarity=0.035 Sum_probs=81.3
Q ss_pred ceEEEEEEccCCCchHHHHHHHhcCC---CCCCCCC--CCCCCc-------------C---------CC----ceEecce
Q psy3301 408 NVYVCHVIGNRSTGKTALCQSILRKH---HDSSKTS--ITSPVE-------------C---------DP----PYTINTT 456 (608)
Q Consensus 408 ~~~k~~viG~~gvGKTsll~~f~~~~---~~~~~~~--t~~~~~-------------~---------~~----~~~i~~~ 456 (608)
..++++++|..++|||||++++++.. +...+.+ |+.... | .. ...+.-+
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 45899999999999999999999543 3333322 222100 0 00 1344555
Q ss_pred EeCCcceeEeeeeccccc------ccccCCCCc----c--cccccccCCCCCcEEEEEeCCCCCcchh--cccccHHHHH
Q psy3301 457 TVYGQEKYLVLKEILVRD------EQLPVLLPV----D--VDCDKYFSTSKIPVMLVAGKSDMPRARQ--DYLMQPDIFC 522 (608)
Q Consensus 457 ~v~Gqe~~~~l~~~~~~~------v~d~~l~~~----~--~~~~~~~~~~~~p~ilVgnK~DL~~~~~--~~~~~~~~~~ 522 (608)
+.+|++.|.......... ++| .++. + +.+.........|+++|+||+|+.+..+ ...++..+++
T Consensus 87 DtPGh~~f~~~~~~~~~~~D~~ilVvd--a~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l 164 (408)
T 1s0u_A 87 DSPGHETLMATMLSGASLMDGAILVIA--ANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFV 164 (408)
T ss_dssp ECSSHHHHHHHHHTTCSCCSEEEEEEE--TTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTTTHHHHHHHHH
T ss_pred ECCCHHHHHHHHHHhHhhCCEEEEEEE--CCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence 668888875433222211 566 4421 1 1111111112358999999999975432 2234556666
Q ss_pred HHcC--CCCceEEc--cCCCHHHHHHHHHHHHcCCC
Q psy3301 523 ETHK--LSPAHSFS--AANNDREVFVKLATMAAFPR 554 (608)
Q Consensus 523 ~~~~--~~~~~~~S--~~~~v~e~F~~l~~~a~~p~ 554 (608)
++.. -.+++++| ++.|++++|..|.+.+..|.
T Consensus 165 ~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~~ 200 (408)
T 1s0u_A 165 KGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTPK 200 (408)
T ss_dssp TTSTTTTCCEEEC------CHHHHHHHHHHHSCCCC
T ss_pred hhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCc
Confidence 6532 22478889 89999999999998776654
No 496
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein, EF-hand, calcium regulation, oligomer neuronal development, spine2; 2.03A {Danio rerio}
Probab=98.73 E-value=2.3e-09 Score=89.30 Aligned_cols=68 Identities=18% Similarity=0.241 Sum_probs=56.6
Q ss_pred HHHHHHHHHhhhc-CCCCC-CCCHHHHHHhhcc-----CCCCCCCCCccccccceecCCCCccchhhHHhHhhhh
Q psy3301 294 GQQFLTTLFYRFD-KDGDG-ALSPEEQARLFSL-----CPPECPPWTDREMRAMVATNSKGWITMQGFLCYWILT 361 (608)
Q Consensus 294 ~~~~l~~~F~~fD-~d~dG-~ls~~El~~~~~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~~ 361 (608)
..+.|+.+|+.|| +|++| +|+.+||+.+++. +|....+.++.++++.+|.|+||.|+|+||+..+.-.
T Consensus 8 ~~~~l~~~F~~fDd~dg~gG~I~~~El~~~l~~~~~~~lg~~~~~~~v~~l~~~~D~d~dG~I~f~EF~~~~~~~ 82 (99)
T 2y5i_A 8 AMDALITVFHNYSGSEGDKYKLSKGELKELLNAELTDFLMSQKDPMLVEKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (99)
T ss_dssp HHHHHHHHHHHHHTSSSSTTEECHHHHHHHHHHHSGGGGTTSCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcCcCCHHHHHHHHHHHhhhhccccccHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 3678999999998 89998 9999999999986 3422333457889999999999999999999988654
No 497
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB: 2jc2_A
Probab=98.73 E-value=9.1e-09 Score=97.21 Aligned_cols=91 Identities=18% Similarity=0.206 Sum_probs=76.3
Q ss_pred HHHHHHHHhccCCCCCccCHHHHHHHhhcccCCCCChhhHHHHHHHHHHhcCCCccCCCCcchhhHHHHHHHHHhcCCCc
Q psy3301 175 KALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQRGRSH 254 (608)
Q Consensus 175 ~~L~~~f~~~D~d~dg~l~~~El~~~~~~~~g~~~~~~el~~i~~~~~~~~~~~~~~~~~i~~~~F~~l~~~~~~~~~~e 254 (608)
..++++|+.+|.|++|.|+.+|+..+++. +|..+++++++.++..+ + ++|.|+|++|+.++..
T Consensus 103 ~~~~~~F~~~D~d~~G~I~~~el~~~l~~-~g~~~~~~~~~~l~~~~--d------~dg~i~~~eF~~~~~~-------- 165 (198)
T 1juo_A 103 NGWRQHFISFDTDRSGTVDPQELQKALTT-MGFRLSPQAVNSIAKRY--S------TNGKITFDDYIACCVK-------- 165 (198)
T ss_dssp HHHHHHHHTTCTTCCSEECHHHHHHHHHH-TTCCCCHHHHHHHHHHT--C------SSSSEEHHHHHHHHHH--------
T ss_pred HHHHHHHHHhCCCCCCcCCHHHHHHHHHH-hCCCCCHHHHHHHHHHh--C------CCCeEcHHHHHHHHHH--------
Confidence 57889999999999999999999999886 68889999999998888 4 6899999999977542
Q ss_pred chhHHhhhccCCCCccccccccCCCCCCCCCCccccCHhHHHHHHHHHhhhcCCCCCCCCHHHHHHhhc
Q psy3301 255 TTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFS 323 (608)
Q Consensus 255 ~~w~~lr~f~y~~~l~~~~~~~~p~~~~~~~~~~eLs~~~~~~l~~~F~~fD~d~dG~ls~~El~~~~~ 323 (608)
.+.+..+|+.||+|++|.|+.+ +++.+.
T Consensus 166 ----------------------------------------~~~~~~~F~~~D~d~~G~is~~-~~~~l~ 193 (198)
T 1juo_A 166 ----------------------------------------LRALTDSFRRRDTAQQGVVNFP-YDDFIQ 193 (198)
T ss_dssp ----------------------------------------HHHHHHHHHHTCTTCCSEEEEE-HHHHHH
T ss_pred ----------------------------------------HHHHHHHHHHhCCCCCCeEeec-HHHHHH
Confidence 1346788999999999999986 665543
No 498
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO, EF-hand calcium binding proteins, S100 proteins, protein dynamics, binding protein; 2.10A {Homo sapiens} SCOP: a.39.1.0 PDB: 2l0u_A 2l0v_A 2l50_A 2l51_A
Probab=98.73 E-value=7.2e-09 Score=86.33 Aligned_cols=69 Identities=12% Similarity=0.092 Sum_probs=55.9
Q ss_pred HHHHHHHHHhhhcCCC---CCCCCHHHHHHhhccCC-CCCC----CCCccccccceecCCCCccchhhHHhHhhhhh
Q psy3301 294 GQQFLTTLFYRFDKDG---DGALSPEEQARLFSLCP-PECP----PWTDREMRAMVATNSKGWITMQGFLCYWILTT 362 (608)
Q Consensus 294 ~~~~l~~~F~~fD~d~---dG~ls~~El~~~~~~~~-~~~~----~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~~~ 362 (608)
..+.|+++|+.||+|+ +|+|+.+||+.+++..+ .... +.++.++++.+|.|+||.|+|+||+..+.-.+
T Consensus 9 ~i~~l~~~F~~fD~~~g~~~G~Is~~EL~~~l~~~~~~~l~~~~~~~ev~~~i~~~D~d~DG~Idf~EF~~~m~~~~ 85 (100)
T 3nxa_A 9 AVIVLVENFYKYVSKYSLVKNKISKSSFREMLQKELNHMLSDTGNRKAADKLIQNLDANHDGRISFDEYWTLIGGIT 85 (100)
T ss_dssp HHHHHHHHHHHTSCTTCSCTTCBCHHHHHHHHHHHSTTTTCSSHHHHHHHHHHHHSCCCSSCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcCCCCCCeEcHHHHHHHHHHHccccccccccHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 3788999999999964 79999999999998643 1111 23478899999999999999999999876544
No 499
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.72 E-value=8e-09 Score=109.31 Aligned_cols=146 Identities=11% Similarity=0.047 Sum_probs=86.8
Q ss_pred CceEEEEEEccCCCchHHHHHHHhcCC---CCCCCCC--CCCCCc-------------C---------CC----ceEecc
Q psy3301 407 RNVYVCHVIGNRSTGKTALCQSILRKH---HDSSKTS--ITSPVE-------------C---------DP----PYTINT 455 (608)
Q Consensus 407 r~~~k~~viG~~gvGKTsll~~f~~~~---~~~~~~~--t~~~~~-------------~---------~~----~~~i~~ 455 (608)
...++++++|..++|||||++++++.. +...+.+ |+.... | .. ...++-
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence 467999999999999999999999543 2222222 221100 0 00 134555
Q ss_pred eEeCCcceeEeeeeccccc------ccccCCCCc--c----cccccccCCCCCcEEEEEeCCCCCcchh--cccccHHHH
Q psy3301 456 TTVYGQEKYLVLKEILVRD------EQLPVLLPV--D----VDCDKYFSTSKIPVMLVAGKSDMPRARQ--DYLMQPDIF 521 (608)
Q Consensus 456 ~~v~Gqe~~~~l~~~~~~~------v~d~~l~~~--~----~~~~~~~~~~~~p~ilVgnK~DL~~~~~--~~~~~~~~~ 521 (608)
++.+|++.|.......... ++| .++. . +...........|+++|+||+|+.+..+ ...++..++
T Consensus 88 iDtPGh~~f~~~~~~~~~~~D~~ilVvd--a~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~ 165 (410)
T 1kk1_A 88 IDAPGHEALMTTMLAGASLMDGAILVIA--ANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEF 165 (410)
T ss_dssp EECSSHHHHHHHHHHCGGGCSEEEEEEE--TTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred EECCChHHHHHHHHhhhhhCCEEEEEEE--CCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHHHHHHHHHHHHH
Confidence 6668888775332222211 566 4421 1 1111111112358999999999976432 223455666
Q ss_pred HHHc--CCCCceEEc--cCCCHHHHHHHHHHHHcCCC
Q psy3301 522 CETH--KLSPAHSFS--AANNDREVFVKLATMAAFPR 554 (608)
Q Consensus 522 ~~~~--~~~~~~~~S--~~~~v~e~F~~l~~~a~~p~ 554 (608)
++.. .-.+++++| ++.|++++|..|.+.+..|.
T Consensus 166 l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p~ 202 (410)
T 1kk1_A 166 IEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTPK 202 (410)
T ss_dssp HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred HHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCc
Confidence 6552 122478889 89999999999998776664
No 500
>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP: a.39.1.1
Probab=98.72 E-value=7.4e-09 Score=81.69 Aligned_cols=67 Identities=22% Similarity=0.316 Sum_probs=58.3
Q ss_pred HHHHHHHHhhhcC-CCCC-CCCHHHHHHhhcc-CCCCC-CCCCccccccceecCCCCccchhhHHhHhhhh
Q psy3301 295 QQFLTTLFYRFDK-DGDG-ALSPEEQARLFSL-CPPEC-PPWTDREMRAMVATNSKGWITMQGFLCYWILT 361 (608)
Q Consensus 295 ~~~l~~~F~~fD~-d~dG-~ls~~El~~~~~~-~~~~~-~~~~~~~~~~~~d~~~~g~i~~~ef~~~w~~~ 361 (608)
.+.++.+|..||. |++| .|+.+||+.+++. +|... .+.++..++..+|.|++|.|+|+||+..|.-.
T Consensus 6 ~~~l~~~F~~~D~~d~~G~~i~~~el~~~l~~~~g~~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~~ 76 (78)
T 1cb1_A 6 PAELKSIFEKYAAKEGDPNQLSKEELKQLIQAEFPSLLKGPRTLDDLFQELDKNGDGEVSFEEFQVLVKKI 76 (78)
T ss_dssp HHHHHHHHHHHHTTSSSTTEECHHHHHHHHHHHCSSCCSSCCCSSHHHHHTCCCSSSSEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcCEeCHHHHHHHHHHHhhhhcccHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHh
Confidence 5679999999999 9999 9999999999985 76434 55668899999999999999999999988643
Done!