RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3301
(608 letters)
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 84.3 bits (209), Expect = 6e-19
Identities = 35/189 (18%), Positives = 67/189 (35%), Gaps = 59/189 (31%)
Query: 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEV 67
++ ++I+++GD VGKT L+L+ E P VPT ++S
Sbjct: 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPT-----------------AYVPTVFENFS-H 62
Query: 68 DQTVDELTEEIQ-------------------KAHVICLVYSVVDDASIDRLSSHWLPFLR 108
+ + V+ L ++V + S D +S+ W P ++
Sbjct: 63 VMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIK 122
Query: 109 NCLVDTCLPIVLVGNKVDLVDYST--------------------VESSAKTLKNISEMFY 148
+ + VLVG KVDL + +E+S+ ++E+F
Sbjct: 123 HYIDTA--KTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFE 180
Query: 149 YAQKAVLHP 157
+ +
Sbjct: 181 KSVDCIFSN 189
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 82.0 bits (203), Expect = 5e-18
Identities = 47/196 (23%), Positives = 78/196 (39%), Gaps = 63/196 (32%)
Query: 6 SLRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYS 65
S+ + ++ + +GD VGKT +++ S +FP + +PT ++S
Sbjct: 5 SVSKFIKCVTVGDGAVGKTCMLICYTSNKFPT-----------------DYIPTVFDNFS 47
Query: 66 ---EVDQTVDELT-------EE--------IQKAHVICLVYSVVDDASIDRLSSHWLPFL 107
VD + L E+ + A + L +S++ AS + + W+P L
Sbjct: 48 ANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPEL 107
Query: 108 RNCLVDTCLPIVLVGNKVDLVDYST--------------------------VESSAKTLK 141
R + PIVLVG K+DL D +E S+KT +
Sbjct: 108 RRFAPNV--PIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQ 165
Query: 142 NISEMFYYAQKAVLHP 157
N+ +F A K VL P
Sbjct: 166 NVKAVFDTAIKVVLQP 181
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 81.3 bits (201), Expect = 5e-18
Identities = 46/196 (23%), Positives = 75/196 (38%), Gaps = 67/196 (34%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVD 68
R ++ + +GD VGKT L++S S FP + VPT ++S +
Sbjct: 7 RFIKCVTVGDGAVGKTCLLISYTSNTFP-----------------TDYVPTVFDNFS-AN 48
Query: 69 QTVDELTEEIQ-------------------KAHVICLVYSVVDDASIDRLSSHWLPFLRN 109
V+ T + A V L +S++ AS + +S W+P L++
Sbjct: 49 VVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKH 108
Query: 110 CLVDTCLPIVLVGNKVDL---------------VDYST-------------VESSAKTLK 141
PIVLVG K+DL + +E S+K+ +
Sbjct: 109 YAPGV--PIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQE 166
Query: 142 NISEMFYYAQKAVLHP 157
N+ +F A + VL P
Sbjct: 167 NVKGVFDAAIRVVLQP 182
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 79.8 bits (197), Expect = 3e-17
Identities = 41/198 (20%), Positives = 65/198 (32%), Gaps = 67/198 (33%)
Query: 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYS-- 65
R+V+++L+GD GKTSL++ FP PT Y
Sbjct: 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFP-----------------ESYTPTVFERYMVN 74
Query: 66 -EVDQTVDELT-------EEIQK--------AHVICLVYSVVDDASIDRLSSHWLPFLRN 109
+V L ++ + A V+ L + V S D + + W P + +
Sbjct: 75 LQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNH 134
Query: 110 CLVDTCLPIVLVGNKVDL-----------------VDYST-------------VESSAKT 139
PI++VG K DL V Y +E SA+
Sbjct: 135 FCKKV--PIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARL 192
Query: 140 LKNISEMFYYAQKAVLHP 157
N+ +F A + L
Sbjct: 193 HDNVHAVFQEAAEVALSS 210
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 79.0 bits (195), Expect = 4e-17
Identities = 47/198 (23%), Positives = 69/198 (34%), Gaps = 69/198 (34%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVD 68
R V+ +L+GD VGKTSL++S + +P E +PT D
Sbjct: 19 RGVKCVLVGDGAVGKTSLVVSYTTNGYPT-----------------EYIPT-AFDNFSAV 60
Query: 69 QTVDELTEEIQ-------------------KAHVICLVYSVVDDASIDRLSSHWLPFLRN 109
+VD +Q + L +SVV +S +S W+P +R
Sbjct: 61 VSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRC 120
Query: 110 CLVDTCLPIVLVGNKVDL-----------------VDYST-------------VESSAKT 139
PI+LVG + DL V +E SA T
Sbjct: 121 HCPKA--PIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALT 178
Query: 140 LKNISEMFYYAQKAVLHP 157
KN+ E+F A A +
Sbjct: 179 QKNLKEVFDAAIVAGIQY 196
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 77.5 bits (191), Expect = 1e-16
Identities = 45/196 (22%), Positives = 71/196 (36%), Gaps = 67/196 (34%)
Query: 10 NVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYS---E 66
+++++GD GKT L++ +EFP VPT +Y E
Sbjct: 25 RKKLVVVGDGACGKTCLLIVFSKDEFP-----------------EVYVPTVFENYVADIE 67
Query: 67 VDQTVDELT-------EEI--------QKAHVICLVYSVVDDASIDRLSSHWLPFLRNCL 111
VD EL E+ VI + +SV S++ + W+P +++
Sbjct: 68 VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC 127
Query: 112 VDTCLPIVLVGNKVDL-----------------VDYST-------------VESSAKTLK 141
+ PI+LV NK DL V +E SAKT +
Sbjct: 128 PNV--PIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKE 185
Query: 142 NISEMFYYAQKAVLHP 157
+ E+F A +A L
Sbjct: 186 GVREVFETATRAALQK 201
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 75.6 bits (186), Expect = 7e-16
Identities = 41/195 (21%), Positives = 69/195 (35%), Gaps = 69/195 (35%)
Query: 11 VRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQT 70
+++++GD GKT L++ ++FP VPT + + D
Sbjct: 26 KKLVIVGDGACGKTCLLIVFSKDQFP-----------------EVYVPT-VFENYIADIE 67
Query: 71 VDELTEEIQ-------------------KAHVICLVYSVVDDASIDRLSSHWLPFLRNCL 111
VD E+ VI + +S+ S++ + W P +++
Sbjct: 68 VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC 127
Query: 112 VDTCLPIVLVGNKVDL-----------------VDYST-------------VESSAKTLK 141
+ PI+LVGNK DL V +E SAKT +
Sbjct: 128 PNV--PIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKE 185
Query: 142 NISEMFYYAQKAVLH 156
+ E+F A +A L
Sbjct: 186 GVREVFEMATRAGLQ 200
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 74.5 bits (183), Expect = 1e-15
Identities = 43/181 (23%), Positives = 73/181 (40%), Gaps = 35/181 (19%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVDYSEV 67
++ +++GD VGKT L++S ++ FP E VP+ + + V + + D +
Sbjct: 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQ 76
Query: 68 DQTVDELTE-EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVD 126
+ D L V + +SVV+ AS + W+P L+ + P +L+G ++D
Sbjct: 77 EDY-DRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNV--PFLLIGTQID 133
Query: 127 LVD------------------------------YSTVESSAKTLKNISEMFYYAQKAVLH 156
L D VE SA T K + +F A A+L
Sbjct: 134 LRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILT 193
Query: 157 P 157
P
Sbjct: 194 P 194
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 73.6 bits (181), Expect = 2e-15
Identities = 43/184 (23%), Positives = 74/184 (40%), Gaps = 41/184 (22%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVD 68
+ ++ +++GD VGKT L++S + FP + MV V+ D
Sbjct: 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY----SANVMVDGKPVNLGLWD 59
Query: 69 QTVDELTEEI-----QKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGN 123
E + + + V + +S+V AS + + + W P +R+ +T PI+LVG
Sbjct: 60 TAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNT--PIILVGT 117
Query: 124 KVDL-----------------VDYST-------------VESSAKTLKNISEMFYYAQKA 153
K+DL + Y +E SA T + + +F A +A
Sbjct: 118 KLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA 177
Query: 154 VLHP 157
VL P
Sbjct: 178 VLCP 181
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 73.6 bits (181), Expect = 3e-15
Identities = 46/196 (23%), Positives = 76/196 (38%), Gaps = 67/196 (34%)
Query: 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYS-- 65
+ ++ +++GD VGKT L++S + FP E +PT +YS
Sbjct: 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFP-----------------GEYIPTVFDNYSAN 70
Query: 66 -EVDQTVDELT-------EE--------IQKAHVICLVYSVVDDASIDRLSSHWLPFLRN 109
VD L E+ + V + +S+V AS + + + W P +R+
Sbjct: 71 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 130
Query: 110 CLVDTCLPIVLVGNKVDL-----------------VDYST-------------VESSAKT 139
+T PI+LVG K+DL + Y +E SA T
Sbjct: 131 HCPNT--PIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 188
Query: 140 LKNISEMFYYAQKAVL 155
+ + +F A +AVL
Sbjct: 189 QRGLKTVFDEAIRAVL 204
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 72.5 bits (179), Expect = 3e-15
Identities = 41/175 (23%), Positives = 61/175 (34%), Gaps = 52/175 (29%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYS--- 65
+ R+ + G VGK+SL+L V F E +PT Y
Sbjct: 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRE-----------------SYIPTVEDTYRQVI 44
Query: 66 EVDQTVDEL-------TEE--------IQKAHVICLVYSVVDDASIDRLSSHWLPFLRNC 110
D+++ L + + I K H LVYS+ S++ L +
Sbjct: 45 SCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIK 104
Query: 111 LVDTCLPIVLVGNKVDLVDYSTV-----------------ESSAKTLKNISEMFY 148
+PI+LVGNK D V E+SAK N+ E+F
Sbjct: 105 GDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQ 159
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 71.8 bits (177), Expect = 6e-15
Identities = 36/174 (20%), Positives = 57/174 (32%), Gaps = 55/174 (31%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVD-YS---EV 67
+++L+G+ VGK++L + + + D Y V
Sbjct: 4 KVMLVGESGVGKSTLAGTFGGLQGDH-----------------AHEMENSEDTYERRIMV 46
Query: 68 DQTVDEL-------TEE---------IQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCL 111
D+ L + +Q +V+SV D S ++ L LR
Sbjct: 47 DKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKV-PETLLRLRAGR 105
Query: 112 VDTCLPIVLVGNKVDLVDYSTV-----------------ESSAKTLKNISEMFY 148
LP++LVGNK DL V E+SA N E+F
Sbjct: 106 PHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFE 159
Score = 28.6 bits (65), Expect = 3.7
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 493 TSKIPVMLVAGKSDMPRARQ 512
+PV+LV KSD+ R+R+
Sbjct: 107 HHDLPVILVGNKSDLARSRE 126
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 71.8 bits (177), Expect = 8e-15
Identities = 43/164 (26%), Positives = 65/164 (39%), Gaps = 29/164 (17%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFPE-----LVPSKAEEITIPPDVTPEMVPTHIVD 63
R++LLGD VGKTSL ++ + +T+ D E +VD
Sbjct: 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTV--D--GEDTTLVVVD 58
Query: 64 YSEVDQTVDELTEE--IQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLV 121
E ++ ++E +Q +VYS+ D S + S LR +PI+LV
Sbjct: 59 TWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESAS-ELRIQLRRTHQADHVPIILV 117
Query: 122 GNKVDLVDYSTV-----------------ESSAKTLKNISEMFY 148
GNK DL V E+SA N++E+F
Sbjct: 118 GNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFE 161
Score = 28.7 bits (65), Expect = 3.6
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 493 TSKIPVMLVAGKSDMPRARQ 512
+P++LV K+D+ R R+
Sbjct: 109 ADHVPIILVGNKADLARCRE 128
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 71.8 bits (177), Expect = 9e-15
Identities = 38/178 (21%), Positives = 61/178 (34%), Gaps = 53/178 (29%)
Query: 6 SLRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYS 65
++ +I +LG R VGK+SL + V +F + PT ++
Sbjct: 2 PQSKSRKIAILGYRSVGKSSLTIQFVEGQFVD-----------------SYDPTIENTFT 44
Query: 66 ---EVDQTVDEL-------TEE--------IQKAHVICLVYSVVDDASIDRLSSHWLPFL 107
V+ L +E + LVYSV S + + L
Sbjct: 45 KLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIK-VIHGKL 103
Query: 108 RNCLVDTCLPIVLVGNKVDLVDYSTV-----------------ESSAKTLKNISEMFY 148
+ + +PI+LVGNK DL + ESSAK + ++F
Sbjct: 104 LDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFR 161
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 71.5 bits (176), Expect = 2e-14
Identities = 41/174 (23%), Positives = 66/174 (37%), Gaps = 51/174 (29%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYS--- 65
+ R+++ G VGK+SL+L V F + +PT Y
Sbjct: 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRD-----------------TYIPTIEDTYRQVI 49
Query: 66 EVDQTVDEL-------TEE--------IQKAHVICLVYSVVDDASIDRLSSHWLPFLRNC 110
D++V L + + I K H LV+SV S++ L + ++
Sbjct: 50 SCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIK 109
Query: 111 LVDTCLPIVLVGNKVDL----VDYST------------VESSAKTLKNISEMFY 148
+P++LVGNK D VD +E+SAK N+ E+F
Sbjct: 110 GSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQ 163
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 70.5 bits (173), Expect = 3e-14
Identities = 34/194 (17%), Positives = 66/194 (34%), Gaps = 68/194 (35%)
Query: 11 VRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYS---EV 67
+I+++GD GKT+L+ + FP VPT +Y+ E+
Sbjct: 8 CKIVVVGDSQCGKTALLHVFAKDCFP-----------------ENYVPTVFENYTASFEI 50
Query: 68 DQTVDELT-------EE--------IQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLV 112
D EL+ + + + + + ++D + W ++
Sbjct: 51 DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP 110
Query: 113 DTCLPIVLVGNKVDL-----------------VDYST-------------VESSAK-TLK 141
+T ++LVG K DL V Y +E SA +
Sbjct: 111 NT--KMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 168
Query: 142 NISEMFYYAQKAVL 155
++ ++F+ A A +
Sbjct: 169 SVRDIFHVATLACV 182
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 69.4 bits (171), Expect = 4e-14
Identities = 43/176 (24%), Positives = 66/176 (37%), Gaps = 54/176 (30%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYS--- 65
R ++++LG VGK++L + V F E + PT Y
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVE-----------------KYDPTIEDSYRKQV 44
Query: 66 EVDQTVDEL-------TEE--------IQKAHVICLVYSVVDDASIDRLSSHWLPFLRNC 110
EVD L TE+ ++ LVYS+ ++ + L +
Sbjct: 45 EVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQ-DLREQILRV 103
Query: 111 LVDTCLPIVLVGNKVDLVDYSTV------------------ESSAKTLKNISEMFY 148
+P++LVGNK DL D V ESSAK+ N++E+FY
Sbjct: 104 KDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFY 159
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 70.3 bits (173), Expect = 4e-14
Identities = 40/159 (25%), Positives = 61/159 (38%), Gaps = 25/159 (15%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEF-PELVPSKAEEI---TIPPDVTPEMVPTHIVDYSEV 67
+++L+G+ VGK++L + + P E+ I V E V + D E
Sbjct: 25 KVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRI--MVDKEEVTLVVYDIWEQ 82
Query: 68 DQTVDELTEE-IQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVD 126
L + +Q +V+SV D S ++ L LR LP++LVGNK D
Sbjct: 83 GDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVP-ETLLRLRAGRPHHDLPVILVGNKSD 141
Query: 127 LVDYSTV-----------------ESSAKTLKNISEMFY 148
L V E+SA N E+F
Sbjct: 142 LARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFE 180
Score = 28.7 bits (65), Expect = 3.5
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 493 TSKIPVMLVAGKSDMPRARQ 512
+PV+LV KSD+ R+R+
Sbjct: 128 HHDLPVILVGNKSDLARSRE 147
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 69.9 bits (172), Expect = 5e-14
Identities = 39/176 (22%), Positives = 60/176 (34%), Gaps = 53/176 (30%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYS--- 65
V + +LG R GK++L + +++ F E P YS
Sbjct: 20 LEVNLAILGRRGAGKSALTVKFLTKRFIS-----------------EYDPNLEDTYSSEE 62
Query: 66 EVDQTVDEL-------TEE-------IQKAHVICLVYSVVDDASIDRLSS-HWLPFLRNC 110
VD L + + AH +VYSV S D SS L L
Sbjct: 63 TVDHQPVHLRVMDTADLDTPRNCERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAK 122
Query: 111 LVDTCLPIVLVGNKVDLVDYSTV-----------------ESSAKT-LKNISEMFY 148
+P +L+GNK+D+ Y V E SA +++ +F+
Sbjct: 123 ETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFH 178
Score = 28.7 bits (65), Expect = 3.7
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 492 STSKIPVMLVAGKSDMPRARQ 512
+ IP +L+ K DM + RQ
Sbjct: 124 TQRSIPALLLGNKLDMAQYRQ 144
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 69.1 bits (170), Expect = 5e-14
Identities = 36/174 (20%), Positives = 64/174 (36%), Gaps = 52/174 (29%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYS--- 65
+++++G VGK++L + L+ F + E PT Y
Sbjct: 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVD-----------------ECDPTIEDSYRKQV 44
Query: 66 EVDQTVDEL-------TEE--------IQKAHVICLVYSVVDDASIDRLSSHWLPFLRNC 110
+D L EE ++ V+++ + S + + + R
Sbjct: 45 VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK 104
Query: 111 LVDTCLPIVLVGNKVDL----VDYST------------VESSAKTLKNISEMFY 148
D +P+VLVGNK DL V+ +E+SAKT + + + FY
Sbjct: 105 DSDD-VPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 69.6 bits (171), Expect = 7e-14
Identities = 37/175 (21%), Positives = 61/175 (34%), Gaps = 53/175 (30%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYS--- 65
V++ + G VGK++L++ +++ F E PT Y
Sbjct: 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIW-----------------EYDPTLESTYRHQA 69
Query: 66 EVDQTVDEL-------TEE-------IQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCL 111
+D V + E+ ++ LVY + D S + + L
Sbjct: 70 TIDDEVVSMEILDTAGQEDTIQREGHMRWGEGFVLVYDITDRGSFEEVL-PLKNILDEIK 128
Query: 112 VDTCLPIVLVGNKVDLVDYSTV-----------------ESSAKTLK-NISEMFY 148
+ ++LVGNK DL V E SA T + NI+E+FY
Sbjct: 129 KPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFY 183
Score = 29.1 bits (66), Expect = 3.3
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 493 TSKIPVMLVAGKSDMPRARQ 512
+ ++LV K+D+ +RQ
Sbjct: 130 PKNVTLILVGNKADLDHSRQ 149
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 68.7 bits (169), Expect = 8e-14
Identities = 38/172 (22%), Positives = 52/172 (30%), Gaps = 54/172 (31%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYS---EVD 68
++LLLG VGK++L E Y VD
Sbjct: 4 KVLLLGAPGVGKSALARIFGGVEDGPEAE------AA------------GHTYDRSIVVD 45
Query: 69 QTVDEL-------TEE--------IQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVD 113
L + + +VYSV D S ++ S LR
Sbjct: 46 GEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKAS-ELRVQLRRARQT 104
Query: 114 TCLPIVLVGNKVDLVDYSTV-----------------ESSAKTLKNISEMFY 148
+PI+LVGNK DLV V E+SA N+ +F
Sbjct: 105 DDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFE 156
Score = 27.8 bits (63), Expect = 7.6
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 493 TSKIPVMLVAGKSDMPRARQ 512
T +P++LV KSD+ R+R+
Sbjct: 104 TDDVPIILVGNKSDLVRSRE 123
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 69.2 bits (170), Expect = 8e-14
Identities = 36/174 (20%), Positives = 65/174 (37%), Gaps = 52/174 (29%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYS--- 65
+++++G VGK++L + L+ F + E PT Y
Sbjct: 3 TEYKLVVVGADGVGKSALTIQLIQNHFVD-----------------EYDPTIEDSYRKQV 45
Query: 66 EVDQTVDEL-------TEE--------IQKAHVICLVYSVVDDASIDRLSSHWLPFLRNC 110
+D L EE ++ V+++ + S + + H+ ++
Sbjct: 46 VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIH-HYREQIKRV 104
Query: 111 LVDTCLPIVLVGNKVDL----VDYST------------VESSAKTLKNISEMFY 148
+P+VLVGNK DL VD +E+SAKT + + + FY
Sbjct: 105 KDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFY 158
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 69.5 bits (170), Expect = 1e-13
Identities = 32/188 (17%), Positives = 61/188 (32%), Gaps = 42/188 (22%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVD 68
+++L+GD GKT+++ L + +PE E V+ S D
Sbjct: 26 ARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY----TACLETEEQRVELSLWD 81
Query: 69 QTVDELTEEI-----QKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGN 123
+ + + + + L + + ++D W + + T ++L+G
Sbjct: 82 TSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPST--RVLLIGC 139
Query: 124 KVDLVD------------------------------YSTVESSAKTL-KNISEMFYYAQK 152
K DL +E SA T K+I +F A
Sbjct: 140 KTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASM 199
Query: 153 AVLHPMAP 160
L+ +P
Sbjct: 200 LCLNKPSP 207
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 68.3 bits (168), Expect = 1e-13
Identities = 38/169 (22%), Positives = 65/169 (38%), Gaps = 41/169 (24%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFPEL-VP----SKAEEITIPPDVTPEMVPTHIVD 63
R ++++LG VGK++L + V+ F E P +EI + I+D
Sbjct: 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEV----DSSPSVLEILD 57
Query: 64 ------YSEVDQTVDELTEE-IQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCL 116
++ + + I+ LVYS+V+ S + + +
Sbjct: 58 TAGTEQFAS-------MRDLYIKNGQGFILVYSLVNQQSFQDIK-PMRDQIIRVKRYEKV 109
Query: 117 PIVLVGNKVDLVDYSTV-----------------ESSAKTLKNISEMFY 148
P++LVGNKVDL V E+SAK+ + E+F
Sbjct: 110 PVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFA 158
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 68.9 bits (169), Expect = 1e-13
Identities = 39/177 (22%), Positives = 57/177 (32%), Gaps = 54/177 (30%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVD-YS-- 65
R++L+G++ VGK++L D Y
Sbjct: 5 TYYRVVLIGEQGVGKSTLANIFAGVHD----------------SMDSDXEVLGEDTYERT 48
Query: 66 -EVDQTVDEL----------TEE------IQKAHVICLVYSVVDDASIDRLSSHWLPFLR 108
VD + E +Q +VYS+ D AS ++ S LR
Sbjct: 49 LMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKAS-ELRIQLR 107
Query: 109 NCLVDTCLPIVLVGNKVDLVDYSTV-----------------ESSAKTLKNISEMFY 148
+PI+LVGNK DLV V E+SA N+ E+F
Sbjct: 108 RARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFE 164
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 68.4 bits (168), Expect = 2e-13
Identities = 28/170 (16%), Positives = 58/170 (34%), Gaps = 52/170 (30%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYS---EVD 68
++ ++G+ GK++L+ ++ + + EE + VD
Sbjct: 22 KVGIVGNLSSGKSALVHRYLTGTYVQ------EESPE------------GGRFKKEIVVD 63
Query: 69 ------QTVDEL-TEEIQ---KAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPI 118
DE E+Q + V+S+ D+ S + +++L +P+
Sbjct: 64 GQSYLLLIRDEGGPPELQFAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASE-VPM 122
Query: 119 VLVGNKVDL-------VDYST-------------VESSAKTLKNISEMFY 148
VLVG + + +D S E+ A N+ +F
Sbjct: 123 VLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQ 172
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 67.9 bits (167), Expect = 2e-13
Identities = 35/172 (20%), Positives = 63/172 (36%), Gaps = 53/172 (30%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYS---EVD 68
+++++G VGK++L L + +EF E + PT Y +D
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVE-----------------DYEPTKADSYRKKVVLD 48
Query: 69 QTVDEL-------TEE--------IQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVD 113
++ E+ + V+S+ + S + + + D
Sbjct: 49 GEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATA-DFREQILRVKED 107
Query: 114 TCLPIVLVGNKVDLVDYSTV-----------------ESSAKTLKNISEMFY 148
+P +LVGNK DL D V E+SAKT N+ ++F+
Sbjct: 108 ENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFF 159
Score = 27.8 bits (63), Expect = 7.3
Identities = 22/126 (17%), Positives = 38/126 (30%), Gaps = 35/126 (27%)
Query: 414 VIGNRSTGKTAL----CQSILRKHHDS------SKTSITSPVECD-PPYTINTTTVYGQE 462
++G+ GK+AL + ++ K V D I+ GQE
Sbjct: 9 MVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKK-----VVLDGEEVQIDILDTAGQE 63
Query: 463 KYLVLKE---------ILVRD-------EQLPVLLPVDVDCDKYFSTSKIPVMLVAGKSD 506
Y +++ + V + +P +LV KSD
Sbjct: 64 DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFRE---QILRVKEDENVPFLLVGNKSD 120
Query: 507 MPRARQ 512
+ RQ
Sbjct: 121 LEDKRQ 126
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 68.6 bits (168), Expect = 2e-13
Identities = 33/203 (16%), Positives = 66/203 (32%), Gaps = 70/203 (34%)
Query: 3 MKVSLRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIV 62
M + +I+++GD GKT+L+ + FP VPT
Sbjct: 21 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFP-----------------ENYVPTVFE 63
Query: 63 DYSEVDQTVDELTEEIQ-------------------KAHVICLVYSVVDDASIDRLSSHW 103
+Y+ +D E+ + + + + + ++D + W
Sbjct: 64 NYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKW 122
Query: 104 LPFLRNCLVDTCLPIVLVGNKVDL-----------------VDYST-------------V 133
++ +T ++LVG K DL V Y +
Sbjct: 123 KGEIQEFCPNT--KMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYI 180
Query: 134 ESSAK-TLKNISEMFYYAQKAVL 155
E SA + ++ ++F+ A A +
Sbjct: 181 ECSALQSENSVRDIFHVATLACV 203
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 68.4 bits (168), Expect = 2e-13
Identities = 46/178 (25%), Positives = 59/178 (33%), Gaps = 53/178 (29%)
Query: 6 SLRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYS 65
L R ++++LG R VGKTSL V EF E PT YS
Sbjct: 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSE-----------------GYDPTVENTYS 62
Query: 66 ---EVDQTVDEL-------TEE--------IQKAHVICLVYSVVDDASIDRLSSHWLPFL 107
+ + L +E I H LVYSV S + L
Sbjct: 63 KIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIE-SLYQKL 121
Query: 108 RNCLVDTCLPIVLVGNKVDLVDYSTV-----------------ESSAKTLKNISEMFY 148
T +P+VLVGNK DL V ESSA+ + +F
Sbjct: 122 HEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFT 179
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 68.0 bits (167), Expect = 2e-13
Identities = 35/180 (19%), Positives = 65/180 (36%), Gaps = 52/180 (28%)
Query: 3 MKVSLRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIV 62
+ +++++G VGK++L + L+ F + E PT
Sbjct: 14 LYFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVD-----------------EYDPTIED 56
Query: 63 DYS---EVDQTVDEL-------TEE--------IQKAHVICLVYSVVDDASIDRLSSHWL 104
Y +D L EE ++ V+++ + S ++ +
Sbjct: 57 SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADIN-LYR 115
Query: 105 PFLRNCLVDTCLPIVLVGNKVDL----VDYST------------VESSAKTLKNISEMFY 148
++ +P+VLVGNK DL VD +E+SAKT + + + FY
Sbjct: 116 EQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFY 175
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 68.0 bits (167), Expect = 2e-13
Identities = 35/172 (20%), Positives = 63/172 (36%), Gaps = 53/172 (30%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYS---EVD 68
+++++G VGK++L L + +EF E + PT Y +D
Sbjct: 20 KVIMVGSGGVGKSALTLQFMYDEFVE-----------------DYEPTKADSYRKKVVLD 62
Query: 69 QTVDEL-------TEE--------IQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVD 113
++ E+ + V+S+ + S + + + D
Sbjct: 63 GEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATA-DFREQILRVKED 121
Query: 114 TCLPIVLVGNKVDLVDYSTV-----------------ESSAKTLKNISEMFY 148
+P +LVGNK DL D V E+SAKT N+ ++F+
Sbjct: 122 ENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFF 173
Score = 28.3 bits (64), Expect = 6.1
Identities = 22/126 (17%), Positives = 38/126 (30%), Gaps = 35/126 (27%)
Query: 414 VIGNRSTGKTAL----CQSILRKHHDS------SKTSITSPVECD-PPYTINTTTVYGQE 462
++G+ GK+AL + ++ K V D I+ GQE
Sbjct: 23 MVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKK-----VVLDGEEVQIDILDTAGQE 77
Query: 463 KYLVLKE---------ILVRD-------EQLPVLLPVDVDCDKYFSTSKIPVMLVAGKSD 506
Y +++ + V + +P +LV KSD
Sbjct: 78 DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFRE---QILRVKEDENVPFLLVGNKSD 134
Query: 507 MPRARQ 512
+ RQ
Sbjct: 135 LEDKRQ 140
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 67.6 bits (166), Expect = 3e-13
Identities = 39/182 (21%), Positives = 61/182 (33%), Gaps = 55/182 (30%)
Query: 3 MKVSLRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIV 62
M +++++G VGK++L + + F + PT I
Sbjct: 2 MDPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVS-----------------DYDPT-IE 43
Query: 63 D-YS---EVDQTVDEL-------TEE--------IQKAHVICLVYSVVDDASIDRLSSHW 103
D Y+ VD L EE ++ H LV+++ D S + +
Sbjct: 44 DSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVG-KL 102
Query: 104 LPFLRNCLVDTCLPIVLVGNKVDLVDYSTV-----------------ESSAKTLKNISEM 146
+ P+VLVGNK DL V E+SAK N+ E
Sbjct: 103 FTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEA 162
Query: 147 FY 148
F
Sbjct: 163 FE 164
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 67.6 bits (166), Expect = 3e-13
Identities = 35/172 (20%), Positives = 63/172 (36%), Gaps = 53/172 (30%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYS---EVD 68
+++++G VGK++L L + +EF E + PT Y +D
Sbjct: 16 KVIMVGSGGVGKSALTLQFMYDEFVE-----------------DYEPTKADSYRKKVVLD 58
Query: 69 QTVDEL-------TEE--------IQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVD 113
++ E+ + V+S+ + S + + + D
Sbjct: 59 GEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATA-DFREQILRVKED 117
Query: 114 TCLPIVLVGNKVDLVDYSTV-----------------ESSAKTLKNISEMFY 148
+P +LVGNK DL D V E+SAKT N+ ++F+
Sbjct: 118 ENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFF 169
Score = 27.6 bits (62), Expect = 8.9
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 493 TSKIPVMLVAGKSDMPRARQ 512
+P +LV KSD+ RQ
Sbjct: 117 DENVPFLLVGNKSDLEDKRQ 136
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 65.4 bits (160), Expect = 2e-12
Identities = 39/162 (24%), Positives = 63/162 (38%), Gaps = 30/162 (18%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEF-------PELVPSKAEEITIPPDVTPEMVPTHIVDY 64
R++L+G++ VGK++L + + + D E ++D
Sbjct: 39 RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMV--D--GESATIILLDM 94
Query: 65 SEVDQTVDELTEE-IQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGN 123
E + L + +Q +VYS+ D AS ++ S LR +PI+LVGN
Sbjct: 95 WENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKAS-ELRIQLRRARQTEDIPIILVGN 153
Query: 124 KVDLVDYSTV-----------------ESSAKTLKNISEMFY 148
K DLV V E+SA N+ E+F
Sbjct: 154 KSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFE 195
Score = 28.4 bits (64), Expect = 5.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 493 TSKIPVMLVAGKSDMPRARQ 512
T IP++LV KSD+ R R+
Sbjct: 143 TEDIPIILVGNKSDLVRCRE 162
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 63.7 bits (156), Expect = 6e-12
Identities = 38/176 (21%), Positives = 70/176 (39%), Gaps = 42/176 (23%)
Query: 3 MKVSLRRNVRILLLGDRHVGKTSLILSLVSEEFPEL-VP----SKAEEITIPPDVTPEMV 57
+ +++++GD VGK++L + + F + P S + I D +
Sbjct: 11 VPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEI--D--NQWA 66
Query: 58 PTHIVD------YSEVDQTVDELTEE-IQKAHVICLVYSVVDDASIDRLSSHWLPFLRNC 110
++D +S + E+ ++ +VYSV D AS + + LR
Sbjct: 67 ILDVLDTAGQEEFSA-------MREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVK 119
Query: 111 LVDTCLPIVLVGNKVDLVDYSTV-----------------ESSAKTLK-NISEMFY 148
++ P++LV NKVDL+ V E+SAK N+ + F+
Sbjct: 120 DRESF-PMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH 174
Score = 27.5 bits (62), Expect = 8.4
Identities = 25/126 (19%), Positives = 43/126 (34%), Gaps = 35/126 (27%)
Query: 414 VIGNRSTGKTAL----CQSILRKHHDS------SKTSITSPVECD-PPYTINTTTVYGQE 462
V+G+ GK+AL Q I +D K E D ++ GQE
Sbjct: 23 VVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKH-----TEIDNQWAILDVLDTAGQE 77
Query: 463 KYLVLKE---------ILVRD-------EQLPVLLPVDVDCDKYFSTSKIPVMLVAGKSD 506
++ ++E ++V E + + P++LVA K D
Sbjct: 78 EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQ---LILRVKDRESFPMILVANKVD 134
Query: 507 MPRARQ 512
+ R+
Sbjct: 135 LMHLRK 140
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 62.4 bits (151), Expect = 4e-10
Identities = 73/455 (16%), Positives = 127/455 (27%), Gaps = 188/455 (41%)
Query: 269 LQISKEFLHPPLNIPAT--CTAE-LSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLC 325
L +S L L +P A L + QF L + +G + +E
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIASQLQE---QFNKIL----PEPTEGFAADDEPT-----T 56
Query: 326 PPECPPWTDREMRAMVATNSKGWITMQGFLCYWILTTLFNVNKTLEY-------LAYFGY 378
P E +V FL Y +++L +K ++ L F
Sbjct: 57 PAE-----------LVGK----------FLGY--VSSLVEPSKVGQFDQVLNLCLTEF-- 91
Query: 379 PITDREN---QTSGV------LVTREKQVDLLKKQTTRNVYVCHVIGNRSTGKTALCQSI 429
EN + + + L+ + K+ +N ++ R K + S
Sbjct: 92 -----ENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKS--NSA 144
Query: 430 LRKHHDSSKTSITSPVECDPPYTINTTTVY-GQ---EKYLV-LKEI------LVRD---- 474
L + + I + GQ + Y L+++ LV D
Sbjct: 145 LFRAVGEGNAQL---------VAI-----FGGQGNTDDYFEELRDLYQTYHVLVGDLIKF 190
Query: 475 --EQLPVLLPVDVDCDKYFSTSKIPVM-LVAGKSDMPRARQDYLMQ-----PDI------ 520
E L L+ +D +K F+ + ++ + S+ P +DYL+ P I
Sbjct: 191 SAETLSELIRTTLDAEKVFTQG-LNILEWLENPSNTP--DKDYLLSIPISCPLIGVIQLA 247
Query: 521 ----FCETHKLSPAHSFS------------------AANNDREVFVKLATMA-------- 550
+ +P S A + E F A
Sbjct: 248 HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIG 307
Query: 551 -----AFPRF----------------HPAWMLFYPDLT-----SHFYMFNLH--DNKAYL 582
A+P P+ ML +LT + N H K
Sbjct: 308 VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQ-- 365
Query: 583 WKTGLSVA--------VIT-----LLGIIFAKFLR 604
+ ++ V++ L G LR
Sbjct: 366 ----VEISLVNGAKNLVVSGPPQSLYG--LNLTLR 394
Score = 61.2 bits (148), Expect = 8e-10
Identities = 97/599 (16%), Positives = 172/599 (28%), Gaps = 198/599 (33%)
Query: 25 SLILSLVSEEFPELVPSK----AEEI------TIPPDVTPEMVPTHIVDYSEVDQTVDEL 74
L LS S E LVP+ A ++ +P PT + T EL
Sbjct: 8 PLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPE-------PTEGFAADDEPTTPAEL 60
Query: 75 TEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVD--TCLPIVLVGNKVDLVDYST 132
+ V S+V+ + + + L CL + C L GN + +
Sbjct: 61 V-----GKFLGYVSSLVEPSKV----GQFDQVLNLCLTEFENC---YLEGNDIHALAAKL 108
Query: 133 VESSAKTL---KNISEMFYYAQKAVLHPMAPIYISDKQELTPECIKALTRIFKVCDL--- 186
++ + TL K + + + A+ P S L + ++ +
Sbjct: 109 LQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS---ALFRAVGEGNAQLVAIF--GGQ 163
Query: 187 -DNDNLLSDKELNAFQRRCFD--APLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFL 243
+ D+ +EL R + L D ++ + + I + A +F
Sbjct: 164 GNTDDYF--EEL----RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAE-------KVFT 210
Query: 244 HNL-FMQRGRSHTTWTVLRKFGYNEDLQISKEFL-HPPLNIPATCTAELSDKGQQFLTTL 301
L ++ W L N K++L P++ P +L+ ++ T
Sbjct: 211 QGLNILE-------W--LE----NPSNTPDKDYLLSIPISCPLIGVIQLA----HYVVTA 253
Query: 302 FYRFDKDGDGALSPEEQARLFSLCPPECPPWTDREMRAMVA----TNSKGWITMQGFLCY 357
G +P E + +V + W + F
Sbjct: 254 ----KLLG---FTPGELRSYLK--------GATGHSQGLVTAVAIAETDSW---ESFFV- 294
Query: 358 WILTTLFNVNKTLEYLAYFG------YPIT--------DRENQTSGV----LVTR----- 394
+V K + L + G YP T D GV L
Sbjct: 295 -------SVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQE 347
Query: 395 --EKQVDLLKKQ--TTRNVYVCHVIGNRS---TGKT----ALCQSILRKHH-----DSSK 438
+ V+ + V + V G ++ +G L + LRK D S+
Sbjct: 348 QVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLT-LRKAKAPSGLDQSR 406
Query: 439 TSITSPVECDPPYTINTTTVYGQEKYLVLKEILVRDEQLPVLLP------------VDVD 486
P++ + K + + LPV P ++ D
Sbjct: 407 I----------PFS--------ERK------LKFSNRFLPVASPFHSHLLVPASDLINKD 442
Query: 487 CDKY---FSTS--KIPVMLVAGKSDMPRARQDYLMQ---PDIFCE------THKLSPAH 531
K F+ +IPV SD+ R + + I T + H
Sbjct: 443 LVKNNVSFNAKDIQIPVYDTFDGSDL-RVLSGSISERIVDCIIRLPVKWETTTQFKATH 500
Score = 31.9 bits (72), Expect = 0.74
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
Query: 37 ELVPSKAEEITIPP---DVTPEMVPTHIVDY 64
+ + I P + T + THI+D+
Sbjct: 474 SISERIVDCIIRLPVKWETTTQFKATHILDF 504
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 61.2 bits (148), Expect = 5e-10
Identities = 32/182 (17%), Positives = 61/182 (33%), Gaps = 43/182 (23%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVD 68
+ +++ L+GD GKTSL+ L+ E F T +V + P ++ +
Sbjct: 40 QEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQ-----THGLNVVTKQAPNIKGLENDDE 94
Query: 69 QTVDELT-------EE--------IQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVD 113
E + ++ V L+ D++ +WL +
Sbjct: 95 LKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNKH----YWLRHIEKYGGK 150
Query: 114 TCLPIVLVGNKVDLVDYSTV-----------------ESSAKTLKNISEMFYYAQKAVLH 156
+ P+++V NK+D + S K + + + AVLH
Sbjct: 151 S--PVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLH 208
Query: 157 PM 158
P
Sbjct: 209 PD 210
Score = 32.7 bits (74), Expect = 0.35
Identities = 26/164 (15%), Positives = 51/164 (31%), Gaps = 28/164 (17%)
Query: 413 HVIGNRSTGKTALCQSILRKHHDSSKTS--------ITSPVECDPPYTINTTTVY----- 459
H+IG+ GKT+L + ++ + D ++ +P
Sbjct: 45 HLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWD 104
Query: 460 --GQEKYLVLKEILVRDEQLPVLLPVDV----DCDKYFST-----SKIPVMLVAGKSDMP 508
GQE + + + +LL +D + + K PV++V K D
Sbjct: 105 FGGQEIMHASHQFFMTRSSVYMLL-LDSRTDSNKHYWLRHIEKYGGKSPVIVVMNKIDEN 163
Query: 509 RARQDYLMQPDIFCETHKLSPAHSFSAANND--REVFVKLATMA 550
+ + + + H S N D + L +
Sbjct: 164 PSYNIEQKKINERFPAIEN-RFHRISCKNGDGVESIAKSLKSAV 206
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 58.0 bits (141), Expect = 5e-10
Identities = 34/171 (19%), Positives = 55/171 (32%), Gaps = 44/171 (25%)
Query: 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEV 67
+R+ +LGD GK+SLI ++ + L T EM+ VD
Sbjct: 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEK------TESEQYKKEML----VD---- 50
Query: 68 DQTV-----DELTEE----IQKAHVICLVYSVVDDASIDRLSS--HWLPFLRNCLVDT-C 115
QT +E A + V+S+ D+ S +S L LR
Sbjct: 51 GQTHLVLIREEAGAPDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLA 110
Query: 116 LPIVLVGNKVDLVDYSTV------------------ESSAKTLKNISEMFY 148
L +V +++ V E+ A N+ +F
Sbjct: 111 LALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQ 161
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 59.6 bits (144), Expect = 9e-10
Identities = 43/190 (22%), Positives = 76/190 (40%), Gaps = 41/190 (21%)
Query: 3 MKVSLRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIV 62
+ + + ++ +++GD VGKT L++S + FP + MV V
Sbjct: 148 IDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY----SANVMVDGKPV 203
Query: 63 DYSEVDQTVDELTEEIQ-----KAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLP 117
+ D E + ++ + V + +S+V AS + + W P +R+ +T P
Sbjct: 204 NLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNT--P 261
Query: 118 IVLVGNKVDL-----------------VDYST-------------VESSAKTLKNISEMF 147
I+LVG K+DL + Y +E SA T + + +F
Sbjct: 262 IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321
Query: 148 YYAQKAVLHP 157
A +AVL P
Sbjct: 322 DEAIRAVLCP 331
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 57.3 bits (139), Expect = 1e-09
Identities = 40/172 (23%), Positives = 63/172 (36%), Gaps = 53/172 (30%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTV 71
+IL++G+ VGK+SL+L + F PE+ T VD+ +V
Sbjct: 17 KILIIGESGVGKSSLLLRFTDDTF-----------------DPELAATIGVDFKVKTISV 59
Query: 72 DELTEEIQ-------------------KAHVICLVYSVVDDASIDRLSSHWLPFLRNCLV 112
D ++ A + LVY V + +L +WL L
Sbjct: 60 DGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLD-NWLNELETYCT 118
Query: 113 DTCLPIVLVGNKVDL----VDYST------------VESSAKTLKNISEMFY 148
+ +LVGNK+D VD + +E+SAKT + F
Sbjct: 119 RNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFE 170
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 56.9 bits (138), Expect = 2e-09
Identities = 34/193 (17%), Positives = 56/193 (29%), Gaps = 64/193 (33%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYS----EV 67
+ L LGD VGKTS++ +F + + T +D+
Sbjct: 13 KFLALGDSGVGKTSVLYQYTDGKF-----------------NSKFITTVGIDFREKRVVY 55
Query: 68 DQTVDELTEEIQK-------------------------AHVICLVYSVVDDASIDRLSSH 102
+ + A L++ + ++ S + +
Sbjct: 56 RANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVR-N 114
Query: 103 WLPFLRNCLVDTCLPIVLVGNKVDLVDYSTV-----------------ESSAKTLKNISE 145
W+ L+ IVL GNK DL D V E+SA NIS
Sbjct: 115 WISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISH 174
Query: 146 MFYYAQKAVLHPM 158
++ M
Sbjct: 175 AIEMLLDLIMKRM 187
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 55.6 bits (134), Expect = 5e-09
Identities = 34/192 (17%), Positives = 66/192 (34%), Gaps = 59/192 (30%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPEL---------------VPSKAEEITIPPDVTPEM 56
+ +LLG+ VGK+S++L L + F E + + + +
Sbjct: 9 KTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNI 68
Query: 57 VPTHIVDYSEVDQTVDELTEEIQK------------------------AHVICLVYSVVD 92
+ + + + E + A +V+ + +
Sbjct: 69 NSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISN 128
Query: 93 DASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDL----VDYST------------VESS 136
++DR + W+ L+ + I+LV NK+D VD +++S
Sbjct: 129 SNTLDRAKT-WVNQLKI---SSNYIIILVANKIDKNKFQVDILEVQKYAQDNNLLFIQTS 184
Query: 137 AKTLKNISEMFY 148
AKT NI +FY
Sbjct: 185 AKTGTNIKNIFY 196
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 54.8 bits (133), Expect = 5e-09
Identities = 39/179 (21%), Positives = 64/179 (35%), Gaps = 56/179 (31%)
Query: 13 ILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVD 72
++++G+ VGK+S+I F T + T VD+ E V+
Sbjct: 8 MVVVGNGAVGKSSMIQRYCKGIF-----------------TKDYKKTIGVDFLERQIQVN 50
Query: 73 ELTEEIQ-------------------KAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVD 113
+ + A LV+S D S + +S W + + D
Sbjct: 51 DEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAIS-SWREKVVAEVGD 109
Query: 114 TCLPIVLVGNKVDLVDYSTV-----------------ESSAKTLKNISEMFYYAQKAVL 155
+P LV NK+DL+D S + +S K N+SE+F Y + L
Sbjct: 110 --IPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHL 166
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 54.4 bits (132), Expect = 6e-09
Identities = 35/172 (20%), Positives = 59/172 (34%), Gaps = 55/172 (31%)
Query: 13 ILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVD 72
++LLG+ VGKTSL+L +F + + T + +
Sbjct: 9 VVLLGEGCVGKTSLVLRYCENKF-----------------NDKHITTLGASFLTKKLNIG 51
Query: 73 ELTEEIQ-------------------KAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVD 113
+ ++ LVY + D+ S ++ +W+ LR L +
Sbjct: 52 GKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVK-NWVKELRKMLGN 110
Query: 114 TCLPIVLVGNKVDLVDYSTV-----------------ESSAKTLKNISEMFY 148
+ +VGNK+DL V +SAK K I E+F
Sbjct: 111 EIC-LCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFL 161
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 55.0 bits (133), Expect = 8e-09
Identities = 41/183 (22%), Positives = 62/183 (33%), Gaps = 55/183 (30%)
Query: 13 ILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVD 72
+LL+GD VGK+ L+L + + T + T VD+ +D
Sbjct: 36 LLLIGDSGVGKSCLLLRFADDTY-----------------TESYISTIGVDFKIRTIELD 78
Query: 73 ELTEEIQ-------------------KAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVD 113
T ++Q AH I +VY V D S + + WL + +
Sbjct: 79 GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLQEIDRYASE 137
Query: 114 TCLPIVLVGNKVDLVDYSTV-----------------ESSAKTLKNISEMFYYAQKAVLH 156
+LVGNK DL V E+SAK N+ + F +
Sbjct: 138 NVN-KLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 196
Query: 157 PMA 159
M
Sbjct: 197 RMG 199
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 54.5 bits (132), Expect = 9e-09
Identities = 37/183 (20%), Positives = 61/183 (33%), Gaps = 55/183 (30%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTV 71
++LL+G+ VGKTS + + F TP V T +D+
Sbjct: 24 KLLLIGNSSVGKTSFLFRYADDSF-----------------TPAFVSTVGIDFKVKTVYR 66
Query: 72 DELTEEIQ-------------------KAHVICLVYSVVDDASIDRLSSHWLPFLRNCLV 112
+ ++Q A L+Y + + S + W ++
Sbjct: 67 HDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQ-DWATQIKTYSW 125
Query: 113 DTCLPIVLVGNKVDLVDYSTV-----------------ESSAKTLKNISEMFYYAQKAVL 155
D ++LVGNK DL D V E+SAK N+ ++F +
Sbjct: 126 DNAQ-VILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVIC 184
Query: 156 HPM 158
M
Sbjct: 185 EKM 187
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 54.6 bits (132), Expect = 1e-08
Identities = 35/183 (19%), Positives = 63/183 (34%), Gaps = 55/183 (30%)
Query: 13 ILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVD 72
+L++G+ VGKTS + + F TP V T +D+
Sbjct: 26 LLIIGNSSVGKTSFLFRYADDTF-----------------TPAFVSTVGIDFKVKTVYRH 68
Query: 73 ELTEEIQ-------------------KAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVD 113
E ++Q A L+Y + ++ S + + W ++ D
Sbjct: 69 EKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQ-DWATQIKTYSWD 127
Query: 114 TCLPIVLVGNKVDLVDYSTV-----------------ESSAKTLKNISEMFYYAQKAVLH 156
++LVGNK D+ + V E+SAK ++ + F A+
Sbjct: 128 NAQ-VILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICD 186
Query: 157 PMA 159
M+
Sbjct: 187 KMS 189
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 54.6 bits (132), Expect = 1e-08
Identities = 40/178 (22%), Positives = 60/178 (33%), Gaps = 61/178 (34%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTV 71
+I+L GD VGK+S ++ L EF + T VD+ V
Sbjct: 30 KIVLAGDAAVGKSSFLMRLCKNEF-----------------RENISATLGVDFQMKTLIV 72
Query: 72 DELTEEIQ-------------------KAHVICLVYSVVDDASIDRLSSHWLPFLRNCLV 112
D +Q KA + L+Y V + S + W+ + +
Sbjct: 73 DGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIR-EWVDMIED-AA 130
Query: 113 DTCLPIVLVGNKVDLVDYST-----------------------VESSAKTLKNISEMF 147
+PI+LVGNK D+ D + E+SAK NI E
Sbjct: 131 HETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAV 188
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 54.6 bits (132), Expect = 1e-08
Identities = 34/198 (17%), Positives = 55/198 (27%), Gaps = 58/198 (29%)
Query: 13 ILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTH-IVDYSEVDQTV 71
I L+GD VGKT+ I ++ F T V++
Sbjct: 14 ICLIGDGGVGKTTYINRVLDGRF-----------------EKNYNATVGAVNHPVTFLDD 56
Query: 72 DELTEEIQ-------------------KAHVICLVYSVVDDASIDRLSSHWLP-FLRNCL 111
+ A L + V + L+ W+ F
Sbjct: 57 QGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLA-RWVKEFQAVV- 114
Query: 112 VDTCLPIVLVGNKVDLVDYSTV-----------------ESSAKTLKNISEMFYYAQKAV 154
PIV+ NK+D+ + + E SAKT N F + +
Sbjct: 115 -GNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIF 173
Query: 155 LHPMAPIYISDKQELTPE 172
I++S+ E
Sbjct: 174 TGRPDLIFVSNVNLEPTE 191
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 54.2 bits (131), Expect = 1e-08
Identities = 39/192 (20%), Positives = 70/192 (36%), Gaps = 55/192 (28%)
Query: 13 ILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVD 72
+LL+G+ VGK+ L+L + + T + + T VD+ +D
Sbjct: 11 LLLIGNSGVGKSCLLLRFSDDTY-----------------TNDYISTIGVDFKIKTVELD 53
Query: 73 ELTEEIQ-------------------KAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVD 113
T ++Q +H I +VY V D S + + WL +
Sbjct: 54 GKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVK-MWLQEIDR-YAT 111
Query: 114 TCLPIVLVGNKVDLVDYSTV-----------------ESSAKTLKNISEMFYYAQKAVLH 156
+ + +LVGNK DL D V E+SA N+ + F + +
Sbjct: 112 STVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKE 171
Query: 157 PMAPIYISDKQE 168
M+ +++ +
Sbjct: 172 SMSQQNLNETTQ 183
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 53.3 bits (129), Expect = 2e-08
Identities = 38/182 (20%), Positives = 68/182 (37%), Gaps = 54/182 (29%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTV 71
+ILL+GD VGK+ L++ V ++F P + T +D+ +
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKF-----------------NPSFITTIGIDFKIKTVDI 47
Query: 72 DELTEEIQ-------------------KAHVICLVYSVVDDASIDRLSSHWLPFLRNCLV 112
+ ++Q A I LVY + D+ + + W +
Sbjct: 48 NGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIK-QWFKTVNE-HA 105
Query: 113 DTCLPIVLVGNKVDL----VDYST------------VESSAKTLKNISEMFYYAQKAVLH 156
+ ++LVGNK D+ V +ESSAK N++E+F+ K +
Sbjct: 106 NDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165
Query: 157 PM 158
+
Sbjct: 166 KI 167
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.8 bits (136), Expect = 2e-08
Identities = 39/261 (14%), Positives = 75/261 (28%), Gaps = 66/261 (25%)
Query: 6 SLRRNVRILLLGDRHVGKTSLILSLV-SEEFPELVPSKAEEITIPPDVTPEMVPTHIVD- 63
LR +L+ G GKT + L + S + + K + + +PE V +
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205
Query: 64 YSEVDQ--------------TVDELTEEI-----QKAHVICLVYSVVDDASIDRLSSHWL 104
++D + + E+ K + CL+ V+ + + + W
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL--VLLNVQ-N--AKAWN 260
Query: 105 PFLRNC--LV---DTCLPIVLVGNK---VDLVDYSTVESSAKTLK------NISEMFYYA 150
F +C L+ + L + L +S + + +
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 151 QKAVLHPMAPIYISDKQELTPECIK--------ALTRIFKVCDLDNDNLLSDKELNAFQR 202
+ +P I++ LT I + L+ L E R
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS-LNV---LEPAEY----R 372
Query: 203 RCFDA----PLSRDSLEDVKI 219
+ FD P I
Sbjct: 373 KMFDRLSVFP------PSAHI 387
Score = 44.1 bits (103), Expect = 1e-04
Identities = 88/583 (15%), Positives = 168/583 (28%), Gaps = 180/583 (30%)
Query: 60 HIVDY--SEVDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDT-CL 116
H +D+ E ++ + A V V D ++ L
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQD------------MPKSILSKEEID 52
Query: 117 PIVLVGNKVDLVDY--STVESSAKTLKNISEMFYYAQKAVLHP-----MAPIYISDKQEL 169
I++ + V T+ S + + + F + VL M+PI +Q
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQE---EMVQKFV---EEVLRINYKFLMSPIKTEQRQ-- 104
Query: 170 TPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGV 229
P + TR++ D L +D ++ F + +SR + +R+ + +
Sbjct: 105 -PSMM---TRMYIEQ---RDRLYNDNQV--FAKY----NVSR---LQPYLKLRQALLELR 148
Query: 230 SANNCITLNGFLFLHNLFMQ-RGRSHTTWTVLRKFGYNEDLQISKEFLHPP---LNIPAT 285
A N + ++G + G++ V + +Q +F LN+
Sbjct: 149 PAKN-VLIDG--------VLGSGKTWVALDVCL----SYKVQCKMDF---KIFWLNLKNC 192
Query: 286 CTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPECPPWTDREMRAMVATNS 345
+ E + Q L Y+ D + +L R + +
Sbjct: 193 NSPETVLEMLQ---KLLYQIDPNWTSRSDHSSNIKL------RIHSIQAELRRLLKSKPY 243
Query: 346 KGWITMQGFLCYWILTTLFNVNKTLEYLAYFGYPITDRENQTSGVLVTREKQVDLLKKQT 405
+ C +L NV + + F N + +L+T
Sbjct: 244 EN--------CLLVLL---NV-QNAKAWNAF--------NLSCKILLT------------ 271
Query: 406 TRNVYVCHVIGNRSTGKTALCQ-----------SILRKHHDSSKTSI------TSPVEC- 447
TR V + +T +L S+L K+ D + T+P
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331
Query: 448 -------DPPYTINTTTVYGQEK--------YLVLKEILVRD--EQLPVLLPVDVDCDKY 490
D T + +K VL+ R ++L + P
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL-SVFPPSA----- 385
Query: 491 FSTSKIP---------------VMLVA----GKSDMPRARQDYLMQ-PDIFCETHKLSPA 530
IP VM+V S + + ++ + P I+ E
Sbjct: 386 ----HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK--- 438
Query: 531 HSFSAANNDREVFVKLATMAAFPRFHPAWMLFYPDLTSHFYMF 573
N+ + + P+ + L P L +FY
Sbjct: 439 -----LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 54.3 bits (131), Expect = 2e-08
Identities = 39/181 (21%), Positives = 67/181 (37%), Gaps = 54/181 (29%)
Query: 13 ILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVD 72
ILL+GD VGK+ L++ V ++F P + T +D+ ++
Sbjct: 23 ILLIGDSGVGKSCLLVRFVEDKF-----------------NPSFITTIGIDFKIKTVDIN 65
Query: 73 ELTEEIQ-------------------KAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVD 113
++Q A I LVY V D+ + + W + +
Sbjct: 66 GKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIK-QWFKTVNE-HAN 123
Query: 114 TCLPIVLVGNKVDL----VDYST------------VESSAKTLKNISEMFYYAQKAVLHP 157
++LVGNK D+ V +ESSAK N++E+F+ K +
Sbjct: 124 DEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 183
Query: 158 M 158
+
Sbjct: 184 I 184
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 53.3 bits (129), Expect = 2e-08
Identities = 40/183 (21%), Positives = 62/183 (33%), Gaps = 56/183 (30%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTV 71
++L++GD VGK+SL+L F + + T VD+ +
Sbjct: 11 KLLIIGDSGVGKSSLLLRFADNTF-----------------SGSYITTIGVDFKIRTVEI 53
Query: 72 DELTEEIQ-------------------KAHVICLVYSVVDDASIDRLSSHWLPFLRNCLV 112
+ ++Q H + +VY V S + WL +
Sbjct: 54 NGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVK-RWLHEINQNCD 112
Query: 113 DTCLPIVLVGNKVDLVDYSTV-----------------ESSAKTLKNISEMFYYAQKAVL 155
D C +LVGNK D + V E+SAK N+ EMF + VL
Sbjct: 113 DVC--RILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVL 170
Query: 156 HPM 158
Sbjct: 171 RAK 173
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 53.8 bits (130), Expect = 2e-08
Identities = 36/184 (19%), Positives = 59/184 (32%), Gaps = 56/184 (30%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTV 71
+++++G R VGKTSL+ + F T VD+ +
Sbjct: 28 QVIIIGSRGVGKTSLMERFTDDTF-----------------CEACKSTVGVDFKIKTVEL 70
Query: 72 DELTEEIQ-------------------KAHVICLVYSVVDDASIDRLSSHWLPFLRNCLV 112
+Q A I LVY + + D L W+ +
Sbjct: 71 RGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLP-KWMKMIDKYAS 129
Query: 113 DTCLPIVLVGNKVDLVDYSTV------------------ESSAKTLKNISEMFYYAQKAV 154
+ ++LVGNK+D + E+SAK N+ E+F +
Sbjct: 130 EDAE-LLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 188
Query: 155 LHPM 158
L M
Sbjct: 189 LKKM 192
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 53.3 bits (129), Expect = 2e-08
Identities = 40/174 (22%), Positives = 59/174 (33%), Gaps = 55/174 (31%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPS------KAEEITIPPDVTPEMVPTHIVD-- 63
+I++LGD GKTSL E F + IT+P ++ V I D
Sbjct: 8 KIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLN---VTLQIWDIG 64
Query: 64 -----------YSEVDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLV 112
Y I A + LVY + + S + L W ++
Sbjct: 65 GQTIGGKMLDKY-------------IYGAQGVLLVYDITNYQSFENLED-WYTVVKKVSE 110
Query: 113 --DTCLPIVLVGNKVDLVDYSTV-----------------ESSAKTLKNISEMF 147
+T + LVGNK+DL T+ SAKT ++ F
Sbjct: 111 ESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCF 164
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 53.4 bits (129), Expect = 2e-08
Identities = 34/183 (18%), Positives = 63/183 (34%), Gaps = 55/183 (30%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTV 71
++LL+GD VGKT ++ + F + T +D+ +
Sbjct: 10 KLLLIGDSGVGKTCVLFRFSEDAF-----------------NSTFISTIGIDFKIRTIEL 52
Query: 72 DELTEEIQ-------------------KAHVICLVYSVVDDASIDRLSSHWLPFLRNCLV 112
D ++Q A I LVY + ++ S D + +W+ +
Sbjct: 53 DGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIR-NWIRNIEE-HA 110
Query: 113 DTCLPIVLVGNKVDLVDYSTV-----------------ESSAKTLKNISEMFYYAQKAVL 155
+ +++GNK D+ D V E+SAK N+ F+ + +
Sbjct: 111 SADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIK 170
Query: 156 HPM 158
M
Sbjct: 171 AKM 173
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 53.3 bits (129), Expect = 2e-08
Identities = 43/182 (23%), Positives = 66/182 (36%), Gaps = 57/182 (31%)
Query: 13 ILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVD 72
++LLGD VGK+SL+ V+ +F ++ T V++ D VD
Sbjct: 10 VILLGDGGVGKSSLMNRYVTNKF-----------------DTQLFHTIGVEFLNKDLEVD 52
Query: 73 ELTEEIQ-------------------KAHVICLVYSVVDDASIDRLSSHWLP-FLRNCLV 112
+Q + L +SV D S LS+ W F+ V
Sbjct: 53 GHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSN-WKKEFIYYADV 111
Query: 113 DTC--LPIVLVGNKVDL----VDYST-------------VESSAKTLKNISEMFYYAQKA 153
P V++GNK+D+ V E+SAK N++ F A +
Sbjct: 112 KEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRR 171
Query: 154 VL 155
VL
Sbjct: 172 VL 173
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 53.9 bits (130), Expect = 2e-08
Identities = 42/167 (25%), Positives = 69/167 (41%), Gaps = 45/167 (26%)
Query: 13 ILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTV- 71
++ LG++ VGKTSLI + + F + TI D + T ++ D+TV
Sbjct: 19 LVFLGEQSVGKTSLITRFMYDSFDNTYQA-----TIGIDF---LSKTMYLE----DRTVR 66
Query: 72 ----DELTEE---------IQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPI 118
D E I+ + V +VY + + S + + W+ +R + + I
Sbjct: 67 LQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTT-KWIDDVRT-ERGSDVII 124
Query: 119 VLVGNKVDLVDYSTV-----------------ESSAKTLKNISEMFY 148
+LVGNK DL D V E+SAK N+ ++F
Sbjct: 125 MLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFR 171
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 53.9 bits (130), Expect = 2e-08
Identities = 33/193 (17%), Positives = 58/193 (30%), Gaps = 64/193 (33%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYS----EV 67
++L LGD VGKT+ + +F P+ + T +D+
Sbjct: 27 KLLALGDSGVGKTTFLYRYTDNKF-----------------NPKFITTVGIDFREKRVVY 69
Query: 68 DQTVDELTEEIQK-------------------------AHVICLVYSVVDDASIDRLSSH 102
+ + A L++ + S + +
Sbjct: 70 NAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVR-N 128
Query: 103 WLPFLRNCLVDTCLPIVLVGNKVDLVDYSTV-----------------ESSAKTLKNISE 145
W+ L+ IVL+GNK DL D V E+SA T +N+ +
Sbjct: 129 WMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEK 188
Query: 146 MFYYAQKAVLHPM 158
++ M
Sbjct: 189 AVETLLDLIMKRM 201
Score = 28.1 bits (63), Expect = 6.6
Identities = 10/68 (14%), Positives = 21/68 (30%), Gaps = 9/68 (13%)
Query: 486 DCDKYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKLSPAHSF---SAANND--R 540
++L+ K+D+P R+ Q + + + + SAA
Sbjct: 132 QLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGI----PYFETSAATGQNVE 187
Query: 541 EVFVKLAT 548
+ L
Sbjct: 188 KAVETLLD 195
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 53.9 bits (130), Expect = 2e-08
Identities = 35/196 (17%), Positives = 67/196 (34%), Gaps = 58/196 (29%)
Query: 13 ILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVD 72
++L+GD GKT+ + ++ EF + V T V+ + +
Sbjct: 18 LVLVGDGGTGKTTFVKRHLTGEF-----------------EKKYVATLGVEVHPLVFHTN 60
Query: 73 ELTEEIQ-------------------KAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVD 113
+ +A +++ V + + + W R+ LV
Sbjct: 61 RGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WH---RD-LVR 115
Query: 114 TC--LPIVLVGNKVDLVDYSTV---------------ESSAKTLKNISEMFYYAQKAVLH 156
C +PIVL GNKVD+ D + SAK+ N + F + + ++
Sbjct: 116 VCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 175
Query: 157 PMAPIYISDKQELTPE 172
+++ PE
Sbjct: 176 DPNLEFVAMPALAPPE 191
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 53.4 bits (129), Expect = 3e-08
Identities = 33/186 (17%), Positives = 61/186 (32%), Gaps = 56/186 (30%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTV 71
+++L+GD VGKT ++ + F + T VD++ +
Sbjct: 31 KLVLVGDASVGKTCVVQRFKTGAF-----------------SERQGSTIGVDFTMKTLEI 73
Query: 72 DELTEEIQ-------------------KAHVICLVYSVVDDASIDRLSSHWLPFLRNCLV 112
++Q A+ L Y + +S + HW+ +R
Sbjct: 74 QGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVP-HWIEDVRK-YA 131
Query: 113 DTCLPIVLVGNKVDLVDYSTV------------------ESSAKTLKNISEMFYYAQKAV 154
+ + +L+GNK DL + V E+SAK N+ E F +
Sbjct: 132 GSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191
Query: 155 LHPMAP 160
+
Sbjct: 192 IMRHGG 197
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 53.1 bits (128), Expect = 3e-08
Identities = 24/172 (13%), Positives = 57/172 (33%), Gaps = 44/172 (25%)
Query: 13 ILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVD-QTV 71
++++G+ GKT+L+ L+ + +L A T+ DV + ++
Sbjct: 5 LMIVGNTGSGKTTLLQQLMKTKKSDLGMQSA---TVGIDVKDWPIQIRDKRKRDLVLNVW 61
Query: 72 DELT---EE--------IQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVL 120
D EE + + + VY + + WL ++ + P++L
Sbjct: 62 D--FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSS--PVIL 117
Query: 121 VGNKVDLVDYSTV-------------------------ESSAKTLKNISEMF 147
VG +D+ D ++ + ++++
Sbjct: 118 VGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLR 169
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 53.0 bits (128), Expect = 3e-08
Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 45/167 (26%)
Query: 13 ILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTV- 71
++ LG++ VGKTSLI + + F + TI D + T ++ D+TV
Sbjct: 17 LVFLGEQSVGKTSLITRFMYDSFDNTYQA-----TIGIDF---LSKTMYLE----DRTVR 64
Query: 72 ----DELTEE---------IQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPI 118
D +E I+ + V +VY + + S + S W+ +R + + I
Sbjct: 65 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTS-KWIDDVRT-ERGSDVII 122
Query: 119 VLVGNKVDLVDYSTV-----------------ESSAKTLKNISEMFY 148
+LVGNK DL D V E+SAK N+ ++F
Sbjct: 123 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFR 169
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 52.5 bits (127), Expect = 3e-08
Identities = 37/176 (21%), Positives = 62/176 (35%), Gaps = 55/176 (31%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVD 68
+++LLG+ VGK+SL+L V +F T +
Sbjct: 5 CQFKLVLLGESAVGKSSLVLRFVKGQF-----------------HEFQESTIGAAFLTQT 47
Query: 69 QTVDELTEEIQ-------------------KAHVICLVYSVVDDASIDRLSSHWLPFLRN 109
+D+ T + + A +VY + ++ S R +W+ L+
Sbjct: 48 VCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAK-NWVKELQR 106
Query: 110 CLVDTCLPIVLVGNKVDLVDYSTV-----------------ESSAKTLKNISEMFY 148
+ I L GNK DL + V E+SAKT N++E+F
Sbjct: 107 -QASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFM 161
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 53.0 bits (128), Expect = 3e-08
Identities = 43/193 (22%), Positives = 66/193 (34%), Gaps = 55/193 (28%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTV 71
++LL+GD VGK+ L+L + + T + T VD+ +
Sbjct: 18 KLLLIGDSGVGKSCLLLRFADDTY-----------------TESYISTIGVDFKIRTIEL 60
Query: 72 DELTEEIQ-------------------KAHVICLVYSVVDDASIDRLSSHWLPFLRNCLV 112
D T ++Q AH I +VY V D S + + WL +
Sbjct: 61 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLQEIDR-YA 118
Query: 113 DTCLPIVLVGNKVDLVDYSTV-----------------ESSAKTLKNISEMFYYAQKAVL 155
+ +LVGNK DL V E+SAK N+ + F +
Sbjct: 119 SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIK 178
Query: 156 HPMAPIYISDKQE 168
M P + E
Sbjct: 179 KRMGPGATAGGAE 191
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 53.0 bits (128), Expect = 3e-08
Identities = 36/183 (19%), Positives = 63/183 (34%), Gaps = 55/183 (30%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTV 71
+IL++G+ VGKTS + + F TP V T +D+
Sbjct: 10 KILIIGNSSVGKTSFLFRYADDSF-----------------TPAFVSTVGIDFKVKTIYR 52
Query: 72 DELTEEIQ-------------------KAHVICLVYSVVDDASIDRLSSHWLPFLRNCLV 112
++ ++Q A L+Y + ++ S + + W ++
Sbjct: 53 NDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQ-DWSTQIKTYSW 111
Query: 113 DTCLPIVLVGNKVDLVDYSTV-----------------ESSAKTLKNISEMFYYAQKAVL 155
D ++LVGNK D+ D V E+SAK N+ + F +
Sbjct: 112 DNAQ-VLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVIC 170
Query: 156 HPM 158
M
Sbjct: 171 EKM 173
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 53.0 bits (128), Expect = 3e-08
Identities = 40/197 (20%), Positives = 66/197 (33%), Gaps = 61/197 (30%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTV 71
+ L++G GK+ L+ + +F + T V++ V
Sbjct: 27 KFLVIGSAGTGKSCLLHQFIENKF-----------------KQDSNHTIGVEFGSRVVNV 69
Query: 72 DELTEEIQ-------------------KAHVICLVYSVVDDASIDRLSSHWLPFLRNCLV 112
T ++Q A LVY + + + L+ WL R L
Sbjct: 70 GGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLA-AWLTDART-LA 127
Query: 113 DTCLPIVLVGNKVDLVDYSTV-----------------ESSAKTLKNISEMFYYAQKAVL 155
+ ++L GNK DL V E+SA T +N+ E F + +L
Sbjct: 128 SPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTIL 187
Query: 156 HPMAPIYISDKQELTPE 172
+ + D EL PE
Sbjct: 188 NKI------DSGELDPE 198
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 53.0 bits (128), Expect = 3e-08
Identities = 33/184 (17%), Positives = 60/184 (32%), Gaps = 55/184 (29%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTV 71
+++L+G+ VGKT+L+ EF + + T V++S +
Sbjct: 27 KVVLIGESGVGKTNLLSRFTRNEF-----------------SHDSRTTIGVEFSTRTVML 69
Query: 72 DELTEEIQ-------------------KAHVICLVYSVVDDASIDRLSSHWLPFLRNCLV 112
+ Q A LV+ + + + WL L +
Sbjct: 70 GTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVE-RWLKELYD-HA 127
Query: 113 DTCLPIVLVGNKVDLVDYSTV-----------------ESSAKTLKNISEMFYYAQKAVL 155
+ + ++LVGNK DL V E+SA N+ F K +
Sbjct: 128 EATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIF 187
Query: 156 HPMA 159
++
Sbjct: 188 AKVS 191
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 53.0 bits (128), Expect = 3e-08
Identities = 36/173 (20%), Positives = 58/173 (33%), Gaps = 55/173 (31%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTV 71
+I+L+G+ VGKT L+ F P T VD+ +
Sbjct: 28 KIVLIGNAGVGKTCLVRRFTQGLF-----------------PPGQGATIGVDFMIKTVEI 70
Query: 72 DELTEEIQ-------------------KAHVICLVYSVVDDASIDRLSSHWLPFLRNCLV 112
+ ++Q A+ + L Y + + S L WL +
Sbjct: 71 NGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLP-EWLREIEQ-YA 128
Query: 113 DTCLPIVLVGNKVDLVDYSTV-----------------ESSAKTLKNISEMFY 148
+ VLVGNK+DL + V E+SAK N+ ++F
Sbjct: 129 SNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFL 181
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 52.6 bits (127), Expect = 4e-08
Identities = 38/176 (21%), Positives = 59/176 (33%), Gaps = 58/176 (32%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTV 71
+I+++GD +VGKT L + F T VD+ E +
Sbjct: 22 KIIVIGDSNVGKTCLTYRFCAGRF-----------------PDRTEATIGVDFRERAVDI 64
Query: 72 DELTEEIQ--------------------KAHVICLVYSVVDDASIDRLSSHWLPFLRNCL 111
D +IQ H + VY + + AS L W+ + L
Sbjct: 65 DGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLP-AWIEECKQHL 123
Query: 112 VDTCLPIVLVGNKVDLVDYSTV-----------------ESSAKTLK---NISEMF 147
+ +P +LVGNK DL V E+SAK ++ +F
Sbjct: 124 LANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIF 179
Score = 30.3 bits (69), Expect = 1.1
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 486 DCDKYFSTSKIPVMLVAGKSDMPRARQDYLMQPDIFCETHKL-----SPAHSFSAANNDR 540
+C ++ + IP +LV K D+ A Q F +TH + S A + + ++
Sbjct: 118 ECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETS-AKNPNDNDHVE 176
Query: 541 EVFVKLAT 548
+F+ LA
Sbjct: 177 AIFMTLAH 184
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 52.2 bits (126), Expect = 4e-08
Identities = 37/179 (20%), Positives = 66/179 (36%), Gaps = 64/179 (35%)
Query: 13 ILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVD 72
+++LGD VGKTSL+ V++++ + + T D+ + TVD
Sbjct: 11 VIILGDSGVGKTSLMHRYVNDKY-----------------SQQYKATIGADFLTKEVTVD 53
Query: 73 ELTEEIQK----------------------AHVICLVYSVVDDASIDRLSSHWLP-FLRN 109
+++ A LVY V + +S + + S W FL +
Sbjct: 54 G--DKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKS-WRDEFLVH 110
Query: 110 CLVDTC--LPIVLVGNKVDLVDYSTV-------------------ESSAKTLKNISEMF 147
V++ P V++GNK+D + + +SAK N+ F
Sbjct: 111 ANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAF 169
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 52.7 bits (127), Expect = 4e-08
Identities = 42/194 (21%), Positives = 67/194 (34%), Gaps = 57/194 (29%)
Query: 13 ILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVD 72
+++LGD VGKTSL+ V+++F KA TI D+ + VD
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQ--YKA---TIG------------ADFLTKEVMVD 53
Query: 73 ELTEEIQ-------------------KAHVICLVYSVVDDASIDRLSSHWLP-FLRNCLV 112
+ +Q A LV+ V + L S W FL
Sbjct: 54 DRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDS-WRDEFLIQASP 112
Query: 113 DTC--LPIVLVGNKVDLVDYSTV-----------------ESSAKTLKNISEMFYYAQKA 153
P V++GNK+DL + E+SAK N+ + F +
Sbjct: 113 RDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARN 172
Query: 154 VLHPMAPIYISDKQ 167
L + + ++
Sbjct: 173 ALKQETEVELYNEF 186
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 52.7 bits (127), Expect = 5e-08
Identities = 31/191 (16%), Positives = 53/191 (27%), Gaps = 66/191 (34%)
Query: 12 RILLLGDRHVGKTSLILSLVSE--EFPELVPSKAEEITIPPDVTPEMVPTHIVDYS---- 65
++ ++G+ VGK++LI S+ +F + T V+
Sbjct: 22 KVAVVGEATVGKSALISMFTSKGSKF-----------------LKDYAMTSGVEVVVAPV 64
Query: 66 EVDQTVDELTEEIQK-------------------AHVICLVYSVVDDASIDRLSSHWLPF 106
+ T + E+ + LV+ V S + + W
Sbjct: 65 TIPDTTVSV--ELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKA-WFEL 121
Query: 107 LRNCLVDTC--LPIVLVGNKVDLVDYSTV------------------ESSAK-TLKNISE 145
L++ D L VLV NK DL + SA K+
Sbjct: 122 LKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADA 181
Query: 146 MFYYAQKAVLH 156
F
Sbjct: 182 PFLSIATTFYR 192
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 52.2 bits (126), Expect = 5e-08
Identities = 39/197 (19%), Positives = 68/197 (34%), Gaps = 61/197 (30%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTV 71
+ L++G+ GK+ L+ + ++F + T V++ V
Sbjct: 12 KFLVIGNAGTGKSCLLHQFIEKKF-----------------KDDSNHTIGVEFGSKIINV 54
Query: 72 DELTEEIQ-------------------KAHVICLVYSVVDDASIDRLSSHWLPFLRNCLV 112
++Q A LVY + + + L++ WL R L
Sbjct: 55 GGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTN-WLTDARM-LA 112
Query: 113 DTCLPIVLVGNKVDLVDYSTV-----------------ESSAKTLKNISEMFYYAQKAVL 155
+ I+L GNK DL V E+SA T +N+ E F + +L
Sbjct: 113 SQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKIL 172
Query: 156 HPMAPIYISDKQELTPE 172
+ + + EL PE
Sbjct: 173 NKI------ESGELDPE 183
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 51.7 bits (125), Expect = 6e-08
Identities = 39/179 (21%), Positives = 64/179 (35%), Gaps = 61/179 (34%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVD 68
R +++ LLGD VGK+S++ V + F P + PT +
Sbjct: 5 RELKVCLLGDTGVGKSSIMWRFVEDSF-----------------DPNINPTIGASFMT-- 45
Query: 69 QTVDELTEEIQK----------------------AHVICLVYSVVDDASIDRLSSHWLPF 106
+TV + E+ K + +VY + + + L +W+
Sbjct: 46 KTV-QYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLK-NWVRE 103
Query: 107 LRNCLVDTCLPIVLVGNKVDLVDYSTV-----------------ESSAKTLKNISEMFY 148
LR + + + GNK DL D V E+SAK NI+E+F
Sbjct: 104 LRQ-HGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFI 161
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 51.8 bits (125), Expect = 6e-08
Identities = 38/181 (20%), Positives = 64/181 (35%), Gaps = 55/181 (30%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTV 71
+ +++GD VGK+ L+ ++F + T V++ V
Sbjct: 17 KYIIIGDMGVGKSCLLHQFTEKKF-----------------MADCPHTIGVEFGTRIIEV 59
Query: 72 DELTEEIQ-------------------KAHVICLVYSVVDDASIDRLSSHWLPFLRNCLV 112
++Q A +VY + ++ + LS WL RN L
Sbjct: 60 SGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLS-SWLTDARN-LT 117
Query: 113 DTCLPIVLVGNKVDLVDYSTV-----------------ESSAKTLKNISEMFYYAQKAVL 155
+ I+L+GNK DL V E+SAKT +N+ + F A K +
Sbjct: 118 NPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 177
Query: 156 H 156
Sbjct: 178 Q 178
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 52.3 bits (126), Expect = 6e-08
Identities = 40/183 (21%), Positives = 63/183 (34%), Gaps = 55/183 (30%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTV 71
+++L+GD VGK++L+ EF E T V+++ V
Sbjct: 7 KVVLIGDSGVGKSNLLSRFTRNEF-----------------NLESKSTIGVEFATRSIQV 49
Query: 72 DELTEEIQ-------------------KAHVICLVYSVVDDASIDRLSSHWLPFLRNCLV 112
D T + Q A LVY + + + + WL LR+
Sbjct: 50 DGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVE-RWLKELRD-HA 107
Query: 113 DTCLPIVLVGNKVDLVDYSTV-----------------ESSAKTLKNISEMFYYAQKAVL 155
D+ + I+LVGNK DL V E+SA N+ E F +
Sbjct: 108 DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIY 167
Query: 156 HPM 158
+
Sbjct: 168 RIV 170
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 51.8 bits (125), Expect = 7e-08
Identities = 39/173 (22%), Positives = 60/173 (34%), Gaps = 55/173 (31%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTV 71
+++L+GD VGK++L+ EF E T V+++ V
Sbjct: 31 KVVLIGDSGVGKSNLLSRFTRNEF-----------------NLESKSTIGVEFATRSIQV 73
Query: 72 DELTEEIQ-------------------KAHVICLVYSVVDDASIDRLSSHWLPFLRNCLV 112
D T + Q A LVY + + + + WL LR+
Sbjct: 74 DGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLKELRD-HA 131
Query: 113 DTCLPIVLVGNKVDLVDYSTV-----------------ESSAKTLKNISEMFY 148
D+ + I+LVGNK DL V E+SA N+ F
Sbjct: 132 DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQ 184
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 51.4 bits (124), Expect = 9e-08
Identities = 39/172 (22%), Positives = 63/172 (36%), Gaps = 55/172 (31%)
Query: 13 ILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVD 72
++LLGD GK+SL+L V ++F T + V+
Sbjct: 15 LVLLGDVGAGKSSLVLRFVKDQF-----------------VEFQESTIGAAFFSQTLAVN 57
Query: 73 ELTEEIQ-------------------KAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVD 113
+ T + + A +V+ V + AS +R W+ L+ +
Sbjct: 58 DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAK-KWVQELQA-QGN 115
Query: 114 TCLPIVLVGNKVDLVDYSTV-----------------ESSAKTLKNISEMFY 148
+ + L GNK DL+D V E+SAKT N+ E+FY
Sbjct: 116 PNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFY 167
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 51.5 bits (124), Expect = 1e-07
Identities = 38/171 (22%), Positives = 60/171 (35%), Gaps = 45/171 (26%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVD 68
R +++ LLGD VGK+S++ V + F TI + VP +
Sbjct: 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDH-----NISPTIGASFMTKTVP---CG----N 69
Query: 69 QTV-----DELTEE---------IQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDT 114
+ D +E + + +VY + S L W+ L+
Sbjct: 70 ELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLK-KWVKELKE-HGPE 127
Query: 115 CLPIVLVGNKVDLVDYSTV-----------------ESSAKTLKNISEMFY 148
+ + + GNK DL D V E+SAK NI E+F
Sbjct: 128 NIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQ 178
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 50.6 bits (122), Expect = 2e-07
Identities = 38/185 (20%), Positives = 63/185 (34%), Gaps = 56/185 (30%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHI-VDYSEVDQT 70
+++L+GD VGKT L++ F + + +D+
Sbjct: 12 KVMLVGDSGVGKTCLLVRFKDGAF-----------------LAGTFISTVGIDFRNKVLD 54
Query: 71 VDELTEEIQ-------------------KAHVICLVYSVVDDASIDRLSSHWLPFLRNCL 111
VD + ++Q AH + L+Y V + AS D + WL +
Sbjct: 55 VDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQ-AWLTEIHE-Y 112
Query: 112 VDTCLPIVLVGNKVDLVDYSTV-----------------ESSAKTLKNISEMFYYAQKAV 154
+ ++L+GNKVD V E+SAKT N+ F K +
Sbjct: 113 AQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172
Query: 155 LHPMA 159
Sbjct: 173 KRRSM 177
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 50.3 bits (121), Expect = 3e-07
Identities = 38/183 (20%), Positives = 62/183 (33%), Gaps = 55/183 (30%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTV 71
+ +++GD VGK+ L+L + F P T V++ +
Sbjct: 23 KYIIIGDTGVGKSCLLLQFTDKRF-----------------QPVHDLTIGVEFGARMVNI 65
Query: 72 DELTEEIQ-------------------KAHVICLVYSVVDDASIDRLSSHWLPFLRNCLV 112
D ++Q A LVY + + + L+ WL R
Sbjct: 66 DGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLT-SWLEDARQ-HS 123
Query: 113 DTCLPIVLVGNKVDLVDYSTV-----------------ESSAKTLKNISEMFYYAQKAVL 155
+ + I+L+GNK DL V E+SAKT N+ E F K +
Sbjct: 124 SSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIY 183
Query: 156 HPM 158
+
Sbjct: 184 RKI 186
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 50.1 bits (120), Expect = 5e-07
Identities = 35/184 (19%), Positives = 63/184 (34%), Gaps = 55/184 (29%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTV 71
+I+L+GD VGK++L+ EF + T V+++ +
Sbjct: 15 KIVLIGDSGVGKSNLLSRFTKNEF-----------------NMDSKSTIGVEFATRTLEI 57
Query: 72 DELTEEIQ-------------------KAHVICLVYSVVDDASIDRLSSHWLPFLRNCLV 112
+ + Q A +VY + +S + + HWL LR
Sbjct: 58 EGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCN-HWLSELRE-NA 115
Query: 113 DTCLPIVLVGNKVDLVDYSTV-----------------ESSAKTLKNISEMFYYAQKAVL 155
D + + L+GNK DL V E+SA +N+ + F +
Sbjct: 116 DDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIY 175
Query: 156 HPMA 159
++
Sbjct: 176 QKVS 179
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 46.5 bits (110), Expect = 9e-06
Identities = 14/81 (17%), Positives = 22/81 (27%), Gaps = 19/81 (23%)
Query: 86 LVYSV--VDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYSTV---------- 133
L V + + D PIV+V K D +
Sbjct: 168 LGIDVSRGMNRNFDDQLKFVSNLYNQLAKTK-KPIVVVLTKCDEGVERYIRDAHTFALSK 226
Query: 134 ------ESSAKTLKNISEMFY 148
E+SA++ N+ F
Sbjct: 227 KNLQVVETSARSNVNVDLAFS 247
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 45.2 bits (107), Expect = 1e-05
Identities = 24/158 (15%), Positives = 49/158 (31%), Gaps = 33/158 (20%)
Query: 167 QELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRR-CFDAPLSRDSLEDVKIVIRKNI 225
++L P+ + L + F DLD+D + E+ + R + + +E ++ +R
Sbjct: 28 EDLHPKMLSRLYKRFDTFDLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVRVFF 87
Query: 226 ND-GVSANNCITLNGFLFLHNLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPA 284
GV N + ++ R F E + +
Sbjct: 88 LHKGVEPVNGLLREDWV----------------EANRVFAEAERERERRGEPSLI----- 126
Query: 285 TCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLF 322
+ + D DGDG + +E +
Sbjct: 127 ----------ALLSNSYYDVLDDDGDGTVDVDELKTMM 154
Score = 32.9 bits (75), Expect = 0.17
Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
Query: 289 ELSDKGQQFLTTLFYRFDKDGDGALSPEE-QARLFSLCPPECPPWTDREMRAMVA 342
+L K L F FD D DG + +E + TD ++ M
Sbjct: 29 DLHPKMLSRLYKRFDTFDLDSDGKMEMDEVLYWPDRMRQL--VNATDEQVEKMRD 81
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 44.3 bits (105), Expect = 2e-05
Identities = 25/195 (12%), Positives = 52/195 (26%), Gaps = 43/195 (22%)
Query: 166 KQELTPECIKALTRIFKVCDLDNDNLLSDKELN-AFQRRCFDAPLSRDSLEDVKIVIRKN 224
+ ++ + + D+ D +S ++ R A LS + E+ + +
Sbjct: 5 TESERAYHLRKMKTRMQRVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRV 64
Query: 225 IND-GVSANNCITLNGFLFLHNLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIP 283
+ G++ I++ + + +
Sbjct: 65 ADQLGLAPGVRISVEEAAVNATDSLLKMKG------------------------------ 94
Query: 284 ATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPECPPWTDREMRAMVA- 342
E ++ D D DG +S E P+ TD +
Sbjct: 95 -----EEKAMAVIQSLIMYDCIDTDKDGYVSLPEFKAFLQAVGPDL---TDDKAITCFNT 146
Query: 343 --TNSKGWITMQGFL 355
N G I+ FL
Sbjct: 147 LDFNKNGQISRDEFL 161
Score = 29.7 bits (67), Expect = 2.0
Identities = 11/60 (18%), Positives = 18/60 (30%), Gaps = 1/60 (1%)
Query: 158 MAPIYISDKQELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDV 217
+ K E + ++ D D D +S E AF + L+ D
Sbjct: 85 ATDSLLKMKGEEKAMAVIQSLIMYDCIDTDKDGYVSLPEFKAFL-QAVGPDLTDDKAITC 143
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 45.1 bits (107), Expect = 5e-05
Identities = 35/205 (17%), Positives = 62/205 (30%), Gaps = 48/205 (23%)
Query: 151 QKAVLHPMAPIYISDKQELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLS 210
+A L M + + + K LT IF D + D L EL +
Sbjct: 317 AQAALLYMG------SKLTSQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQ 370
Query: 211 RDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQRGRSHTTWTVLRKFGYNEDLQ 270
S+ D + ++ VL ++++
Sbjct: 371 DASMLDAS-AVEHEVDQ-------------------------------VLDAVDFDKNGY 398
Query: 271 IS-KEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPEC 329
I EF+ + ++ L F FD D G +S E A +F + +
Sbjct: 399 IEYSEFV-------TVAMDRKTLLSRERLERAFRMFDSDNSGKISSTELATIFGVSDVDS 451
Query: 330 PPWTDREMRAMVATNSKGWITMQGF 354
W + + + V N+ G + F
Sbjct: 452 ETW--KSVLSEVDKNNDGEVDFDEF 474
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 45.1 bits (107), Expect = 6e-05
Identities = 38/205 (18%), Positives = 63/205 (30%), Gaps = 51/205 (24%)
Query: 151 QKAVLHPMAPIYISDKQELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLS 210
+A + + + T E K LT IFK D + D L KEL +
Sbjct: 337 AQAAILFIG------SKLTTLEERKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNE 390
Query: 211 RDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQRGRSHTTWTVLRKFGYNEDLQ 270
L++V+ + +L++ ++++
Sbjct: 391 LGELKNVEEEVDN-----------------------------------ILKEVDFDKNGY 415
Query: 271 IS-KEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPEC 329
I EF I ++ ++ L F FD D G ++ EE A LF L
Sbjct: 416 IEYSEF------ISVCMDKQILFS-EERLRRAFNLFDTDKSGKITKEELANLFGLTSISE 468
Query: 330 PPWTDREMRAMVATNSKGWITMQGF 354
W ++ N I F
Sbjct: 469 KTW--NDVLGEADQNKDNMIDFDEF 491
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 44.3 bits (105), Expect = 8e-05
Identities = 41/205 (20%), Positives = 72/205 (35%), Gaps = 51/205 (24%)
Query: 151 QKAVLHPMAPIYISDKQELTPECIKALTRIFKVCDLDNDNLLSDKEL-NAFQRRCFDAPL 209
+A L MA + + E K LT IF+ D + D L +EL + + + +
Sbjct: 328 AQAALLYMA------SKLTSQEETKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVA 381
Query: 210 SRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQRGRSHTTWTVLRKFGYNEDL 269
D + V I + ++ Y+
Sbjct: 382 VFDLPQIESEV--DAILGAADFDRNGYID--------------------------YS--- 410
Query: 270 QISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPEC 329
EF+ S + L + F +FD+DG+G +S +E A +F L E
Sbjct: 411 ----EFV-------TVAMDRKSLLSKDKLESAFQKFDQDGNGKISVDELASVFGLDHLES 459
Query: 330 PPWTDREMRAMVATNSKGWITMQGF 354
W +EM + + +N+ G + + F
Sbjct: 460 KTW--KEMISGIDSNNDGDVDFEEF 482
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 44.3 bits (105), Expect = 9e-05
Identities = 38/205 (18%), Positives = 63/205 (30%), Gaps = 43/205 (20%)
Query: 151 QKAVLHPMAPIYISDKQELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLS 210
+A L MA ++ E K LT IF+ D +ND +L EL
Sbjct: 313 AQAALLYMA-SKLTTLDE-----TKQLTEIFRKLDTNNDGMLDRDEL------------- 353
Query: 211 RDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQRGRSHTTWTVLRKFGYNEDLQ 270
+ + +N + N + + ++ +
Sbjct: 354 -------VRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDS---------LMPLLDMDGSGS 397
Query: 271 IS-KEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPEC 329
I EF+ A+ ++ + F FDKDG G +S +E +LFS
Sbjct: 398 IEYSEFI-------ASAIDRTILLSRERMERAFKMFDKDGSGKISTKELFKLFSQADSSI 450
Query: 330 PPWTDREMRAMVATNSKGWITMQGF 354
+ V N G + F
Sbjct: 451 QMEELESIIEQVDNNKDGEVDFNEF 475
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 43.3 bits (102), Expect = 1e-04
Identities = 22/208 (10%), Positives = 51/208 (24%), Gaps = 48/208 (23%)
Query: 157 PMAPIYISDKQELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLED 216
MA ++ +T I+ D D L KEL + A + + +
Sbjct: 2 SMAESHL-QSSLITASQFF---EIWLHFDADGSGYLEGKELQNLIQELLQAR--KKAGLE 55
Query: 217 VKIVIRKNIND-GVSANNCITLNGFLFLHNLFMQRGRSHTTWTVLRKFGYNEDLQISKEF 275
+ ++ ++ G + I + + + ++ E+
Sbjct: 56 LSPEMKTFVDQYGQRDDGKIGIVELA----HVLPTEENFLLLFRCQQLKSCEEFM----- 106
Query: 276 LHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFS-----LCPPECP 330
+ ++D D G + EE
Sbjct: 107 ------------------------KTWRKYDTDHSGFIETEELKNFLKDLLEKANKTVDD 142
Query: 331 PWTDREMRAMVA---TNSKGWITMQGFL 355
M+ +N+ G + +
Sbjct: 143 TKLAEYTDLMLKLFDSNNDGKLELTEMA 170
Score = 29.5 bits (66), Expect = 3.3
Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
Query: 165 DKQELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAP---LSRDSLEDVKIVI 221
K + C K + F++ D D + + + EL+A + + L +++ K I
Sbjct: 181 LKFQGIKMCGKEFNKAFELYDQDGNGYIDENELDALLKDLCEKNKQELDINNISTYKKNI 240
Query: 222 RKNINDG 228
+ G
Sbjct: 241 MALSDGG 247
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 41.3 bits (97), Expect = 3e-04
Identities = 42/174 (24%), Positives = 69/174 (39%), Gaps = 48/174 (27%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVD 68
+++++LLG+ VGK+S++L VS +F E TI + V ++ +
Sbjct: 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEP-----TIGAAFLTQRVT---IN----E 49
Query: 69 QTV-----D----E----LT-EEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDT 114
TV D E L + A +VY V S + HW+ L
Sbjct: 50 HTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKA-RHWVKELHE-QASK 107
Query: 115 CLPIVLVGNKVDLVDYST--------------------VESSAKTLKNISEMFY 148
+ I LVGNK+D + E+SAKT +N++++F
Sbjct: 108 DIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 41.4 bits (97), Expect = 3e-04
Identities = 24/202 (11%), Positives = 55/202 (27%), Gaps = 50/202 (24%)
Query: 169 LTPECIKALTRIFKV-CDLDNDNLLSDKELNAFQRR---CFDAPLSRDSLEDVKIVIRKN 224
L + + F D+++D + D + R LS + ++ +
Sbjct: 2 LNDFQKQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDE 61
Query: 225 IND-----GVSANNCITLNGFLFLHNLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPP 279
D ++ ++ ++ +L + + +S
Sbjct: 62 WRDLKGRADINKDDVVSWEEYLAMWEKTIATCKSV------------------------- 96
Query: 280 LNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFS---LCPPECPPWTDRE 336
A+L Q + LF D GDG + EE L +
Sbjct: 97 --------ADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQNYCKNFQLQCADV-----PA 143
Query: 337 MRAMVATNSKGWITMQGFLCYW 358
+ ++ K + + +
Sbjct: 144 VYNVITDGGKVTFDLNRYKELY 165
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 42.5 bits (100), Expect = 3e-04
Identities = 22/152 (14%), Positives = 42/152 (27%), Gaps = 20/152 (13%)
Query: 166 KQELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNI 225
K L+ E L ++F + S ++L + D +K +
Sbjct: 113 KPMLSEEDTNILRQLFLSSAVSGSGKFSFQDLKQVLAKYADTI----PEGPLKKLFVMVE 168
Query: 226 NDGVSANNCITLNGFLFLHNLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPAT 285
ND ++ + + N RK N + +S++
Sbjct: 169 NDT---KGRMSYITLVAVANDLAA------LVADFRKIDTNSNGTLSRKEFR-------E 212
Query: 286 CTAELSDKGQQFLTTLFYRFDKDGDGALSPEE 317
L + LF D+D + E
Sbjct: 213 HFVRLGFDKKSVQDALFRYADEDESDDVGFSE 244
Score = 36.3 bits (84), Expect = 0.021
Identities = 13/67 (19%), Positives = 28/67 (41%)
Query: 289 ELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPECPPWTDREMRAMVATNSKGW 348
LS++ L LF G G S ++ ++ + P +++ MV ++KG
Sbjct: 115 MLSEEDTNILRQLFLSSAVSGSGKFSFQDLKQVLAKYADTIPEGPLKKLFVMVENDTKGR 174
Query: 349 ITMQGFL 355
++ +
Sbjct: 175 MSYITLV 181
Score = 28.6 bits (64), Expect = 5.4
Identities = 6/67 (8%), Positives = 18/67 (26%), Gaps = 1/67 (1%)
Query: 288 AELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPECPPWTDREMRAMVATNSKG 347
A+++ K Q+ +D+ E+A + + +++
Sbjct: 44 AQIAQKEQEQKAK-LAEYDQKVQNEFDARERAEREREAARGDAAAEKQRLASLLKDLEDD 102
Query: 348 WITMQGF 354
Sbjct: 103 ASGYNRL 109
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 41.3 bits (97), Expect = 3e-04
Identities = 23/174 (13%), Positives = 52/174 (29%), Gaps = 14/174 (8%)
Query: 150 AQKAVLHPMAPIYISDKQELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPL 209
++ L + + ++ + F L+ E ++ F
Sbjct: 3 KSQSKLSQDQLQDLVRSTRFDKKELQQWYKGFF--KDCPSGHLNKSEFQKIYKQFFP--- 57
Query: 210 SRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQRGRSHTTWTVLRKFGYNEDL 269
D + V D N I F+ ++ + + + + + +
Sbjct: 58 FGDPSAFAEYVFNVFDADK---NGYIDFKEFICALSVTSRGELNDKLIWAFQLYDLDNNG 114
Query: 270 QISKEFLH------PPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEE 317
IS + + + E D ++ + +F DK+ DG L+ EE
Sbjct: 115 LISYDEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVNKIFNMMDKNKDGQLTLEE 168
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 41.4 bits (97), Expect = 3e-04
Identities = 27/153 (17%), Positives = 38/153 (24%), Gaps = 43/153 (28%)
Query: 167 QELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLED-VKIVIRKNI 225
+E T E + +FK D + L E+ + + D K K+
Sbjct: 40 REKTAEAKQRRIELFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSR 99
Query: 226 NDGVSANNCITLNGFLFLHNLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPAT 285
G N G D EFL
Sbjct: 100 TLGSKLEN----KGSE--------------------------DFV---EFL--------E 118
Query: 286 CTAELSDKGQQF-LTTLFYRFDKDGDGALSPEE 317
L F LT +F D G+ + EE
Sbjct: 119 FRLMLCYIYDFFELTVMFDEIDASGNMLVDEEE 151
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 41.3 bits (97), Expect = 3e-04
Identities = 26/154 (16%), Positives = 44/154 (28%), Gaps = 34/154 (22%)
Query: 167 QELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPL-SRDSLEDVKIVIRKNI 225
P IK +F D++ + ++ E+ + A L + V +
Sbjct: 12 DFDNPRWIKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAF 71
Query: 226 ND--GVSANNCITLNGFLFLHNLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIP 283
G+ I FL L+K+ NE I +
Sbjct: 72 FRGCGMEYGKEIAFPQFLDGWKQLATSE--------LKKWARNEPTLIREW--------- 114
Query: 284 ATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEE 317
+F FDKDG G ++ +E
Sbjct: 115 --------------GDAVFDIFDKDGSGTITLDE 134
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 40.9 bits (96), Expect = 4e-04
Identities = 18/154 (11%), Positives = 43/154 (27%), Gaps = 41/154 (26%)
Query: 174 IKALTRIFKVCDLDNDNLLSDKELNA-FQRRCFDAPLSRDSLEDVKIVIRKNINDGVSA- 231
++ + F D D D ++ + + +R ++ + + + + + ++ ++A
Sbjct: 5 VQKMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAV 64
Query: 232 --NNCITLNGFLFLHNLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAE 289
I + KE + P E
Sbjct: 65 AGGKGID----------------------------ETTFINSMKEMVKNP---------E 87
Query: 290 LSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFS 323
+ L F D + D +S +E F
Sbjct: 88 AKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFG 121
Score = 35.5 bits (82), Expect = 0.021
Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 298 LTTLFYRFDKDGDGALSPEE-QARLFSLCPPECPPWTDREMRAMVATNSKGWITMQG 353
+ T F R D D DGA++ + ++ + + ++ + + W
Sbjct: 8 MKTYFNRIDFDKDGAITRMDFESMAERFA--KESEMKAEHAKVLMDSLTGVWDNFLT 62
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 40.2 bits (94), Expect = 6e-04
Identities = 25/200 (12%), Positives = 59/200 (29%), Gaps = 42/200 (21%)
Query: 167 QELTPECIKALTRIFKV-CDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNI 225
+L+ + R+F D ++D ++ + ++ + +
Sbjct: 4 HQLSDFQRNKILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEA----- 58
Query: 226 NDGVSANNCITLNGFLFLHNLFMQRGRSHTTWTVL-RKFGYNEDLQIS-KEFLHPPLNIP 283
R W L + NED Q++ +E+L
Sbjct: 59 ------------------------RATLKLIWDGLRKYADENEDEQVTKEEWLKMWAECV 94
Query: 284 ATCTA--ELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFS---LCPPECPPWTDREMR 338
+ L + +++ +F D GD + E + ++ + +C
Sbjct: 95 KSVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDKHEYSTVYMSYGIPKSDC-----DAAF 149
Query: 339 AMVATNSKGWITMQGFLCYW 358
++ K +T + F W
Sbjct: 150 DTLSDGGKTMVTREIFARLW 169
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 39.8 bits (93), Expect = 8e-04
Identities = 16/156 (10%), Positives = 34/156 (21%), Gaps = 36/156 (23%)
Query: 166 KQELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQR----RCFDAPLSRDSLEDVKIVI 221
P I +F D++++ +S E+ A + +
Sbjct: 7 SDFDNPRWIGRHKHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKDAVEA 66
Query: 222 RKNINDGVSANNCITLNGFLFLHNLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLN 281
G+ ++
Sbjct: 67 FFG-GAGMKYGVETDWPAYIEGWKKLATDELEKYA------------------------- 100
Query: 282 IPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEE 317
+ + LF DKD +GA++ +E
Sbjct: 101 ------KNEPTLIRIWGDALFDIVDKDQNGAITLDE 130
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 39.4 bits (92), Expect = 0.001
Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 5/68 (7%)
Query: 287 TAELSDKGQQFLTTLFYRFDKDGDGALSPEE-QARLFSLCPPECPPWTDREMRAMVATNS 345
TA SD+ L F R+D DG+GAL + + + E++ +
Sbjct: 2 TAIASDR----LKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFG 57
Query: 346 KGWITMQG 353
+ +
Sbjct: 58 GLFDYLAK 65
Score = 38.2 bits (89), Expect = 0.003
Identities = 27/191 (14%), Positives = 56/191 (29%), Gaps = 38/191 (19%)
Query: 170 TPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGV 229
T L + F D D + L + + +A +V+
Sbjct: 2 TAIASDRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQT---------- 51
Query: 230 SANNCITLNGFLFLHNLFMQRGRSHTTWTVLRKFGYNEDLQIS-KEFLHPPLN-IPATCT 287
++ + ++ G D ++ ++F+ N I
Sbjct: 52 ------------------LKNAFGGLFDYLAKEAGVGSDGSLTEEQFIRVTENLIFEQGE 93
Query: 288 AELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFS---LCPPECPPWTDREMRAMVATN 344
A + + + DK+ DG ++ +E A + + E E V TN
Sbjct: 94 ASFNRVLGPVVKGIVGMCDKNADGQINADEFAAWLTALGMSKAEA-----AEAFNQVDTN 148
Query: 345 SKGWITMQGFL 355
G +++ L
Sbjct: 149 GNGELSLDELL 159
Score = 28.6 bits (64), Expect = 4.0
Identities = 6/40 (15%), Positives = 13/40 (32%)
Query: 164 SDKQELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRR 203
+ + I +CD + D ++ E A+
Sbjct: 91 QGEASFNRVLGPVVKGIVGMCDKNADGQINADEFAAWLTA 130
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 40.0 bits (93), Expect = 0.001
Identities = 27/172 (15%), Positives = 60/172 (34%), Gaps = 16/172 (9%)
Query: 169 LTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRR--CFDAPLSRDSLEDVKIVIRKNIN 226
+I++ D D++ + KEL+ F R P + + E V+ + + ++
Sbjct: 5 FANLDAAGFLQIWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMS 64
Query: 227 DG-VSANNCITLNGFLFL-------HNLFMQRGRSHTTWTVLRK----FGYNEDLQISKE 274
+ + + + + L +R K + + IS
Sbjct: 65 AYDATFDGRLQIEELANMILPQEENFLLIFRREAPLDNSVEFMKIWRKYDADSSGYISAA 124
Query: 275 FLHPPL-NIPATCTAELSDKG-QQFLTTLFYRFDKDGDGALSPEEQARLFSL 324
L L ++ ++ ++ + FDK+ DG L + AR+ +L
Sbjct: 125 ELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLDLNDLARILAL 176
Score = 40.0 bits (93), Expect = 0.001
Identities = 24/191 (12%), Positives = 59/191 (30%), Gaps = 21/191 (10%)
Query: 152 KAVLHPMAPIYISDKQELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRR---CFDAP 208
+L + ++E + +I++ D D+ +S EL F +
Sbjct: 81 NMILPQEENFLLIFRREAPLDNSVEFMKIWRKYDADSSGYISAAELKNFLKDLFLQHKKK 140
Query: 209 LSRDSL-EDVKIVIRKNINDGVSANNCITLNGFLFL----HNLFMQRGRSHTT------- 256
+ + L E +++ + + + LN + N +Q ++
Sbjct: 141 IPPNKLDEYTDAMMKIFDKNK---DGRLDLNDLARILALQENFLLQFKMDASSQVERKRD 197
Query: 257 -WTVLRKFGYNEDLQISKEFLHPPL-NIPATCTAELSDKG-QQFLTTLFYRFDKDGDGAL 313
+ + + + + + ++ +S +F L D + DG +
Sbjct: 198 FEKIFAHYDVSRTGALEGPEVDGFVKDMMELVRPSISGGDLDKFRECLLTHCDMNKDGKI 257
Query: 314 SPEEQARLFSL 324
E A L
Sbjct: 258 QKSELALCLGL 268
Score = 34.7 bits (79), Expect = 0.069
Identities = 9/65 (13%), Positives = 21/65 (32%), Gaps = 10/65 (15%)
Query: 301 LFYRFDKDGDGALSPEE-----QARLFSLCPPECPP-----WTDREMRAMVATNSKGWIT 350
++ FD D +G + +E + L L P + + + G +
Sbjct: 16 IWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSAYDATFDGRLQ 75
Query: 351 MQGFL 355
++
Sbjct: 76 IEELA 80
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 39.2 bits (92), Expect = 0.002
Identities = 20/87 (22%), Positives = 25/87 (28%), Gaps = 10/87 (11%)
Query: 277 HPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEE-QARL----FSLCPPECPP 331
H P + + Q L F D DG GA+S E A L
Sbjct: 8 HMPTSTGVYAPSARHMNDNQELMEWFRAVDTDGSGAISVPELNAALSSAGVPFSLATT-- 65
Query: 332 WTDREMRAMVATNSKGWITMQGFLCYW 358
++ M N G IT F
Sbjct: 66 ---EKLLHMYDKNHSGEITFDEFKDLH 89
Score = 37.7 bits (88), Expect = 0.005
Identities = 27/166 (16%), Positives = 45/166 (27%), Gaps = 47/166 (28%)
Query: 166 KQELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNI 225
+ L F+ D D +S ELNA SL + ++
Sbjct: 18 PSARHMNDNQELMEWFRAVDTDGSGAISVPELNAALSSAGVPF----SLATTEKLLHMYD 73
Query: 226 NDGVSANNCITLNGFLFLH-------NLFMQ--RGRS-----HTTWTVLRKFGYNEDLQI 271
+ + IT + F LH F + + L GY
Sbjct: 74 KNH---SGEITFDEFKDLHHFILSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQ----- 125
Query: 272 SKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEE 317
+S+ Q L +FD+ G+L ++
Sbjct: 126 ------------------VSE---QTFQALMRKFDRQRRGSLGFDD 150
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 39.0 bits (91), Expect = 0.002
Identities = 28/148 (18%), Positives = 57/148 (38%), Gaps = 20/148 (13%)
Query: 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSK---AEEITIPPDVTPEMVPTHIVDY 64
+L +G GKT L + L++ ++ + S + + + + ++D
Sbjct: 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSL---TLIDL 61
Query: 65 SEVDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDT-----CLPIV 119
+ +L + K+ +V+ VVD A+ R FL L+D+ ++
Sbjct: 62 PGHESLRFQLLDRF-KSSARAVVF-VVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLL 119
Query: 120 LVGNKVDLVDYSTVESSAKTLKNISEMF 147
+ NK D+ AK+ K I +
Sbjct: 120 IACNKQDIAM-------AKSAKLIQQQL 140
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 38.8 bits (90), Expect = 0.002
Identities = 15/160 (9%), Positives = 48/160 (30%), Gaps = 10/160 (6%)
Query: 163 ISDKQELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIR 222
+ + + E + + + F ++ ++ + + F + + V
Sbjct: 24 LQLNTKFSEEELCSWYQSFL--KDCPTGRITQQQFQSIYAKFFPDTDPKAYAQHVFRSFD 81
Query: 223 KNINDGVSANNCITLNGFLFLHNLFMQRGRSHTTWTVL-----RKFGYNEDLQISKEFLH 277
N++ + + L + + +++ NE L+I
Sbjct: 82 SNLDGTLDFKEYVI---ALHMTTAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVMAIFK 138
Query: 278 PPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEE 317
+ + ++ ++ F K+ D L+ +E
Sbjct: 139 MITPEDVKLLPDDENTPEKRAEKIWKYFGKNDDDKLTEKE 178
Score = 36.1 bits (83), Expect = 0.019
Identities = 30/153 (19%), Positives = 44/153 (28%), Gaps = 15/153 (9%)
Query: 192 LSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFL-FLHNLFMQR 250
LS + L Q S + L K+ G IT F F
Sbjct: 16 LSKEILEELQLNTK---FSEEELCSWYQSFLKDCPTGR-----ITQQQFQSIYAKFFPDT 67
Query: 251 GRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGD 310
V R F N D + F + + T + + K L F +D DG+
Sbjct: 68 DPKAYAQHVFRSFDSNLDGTLD--FKEYVIALHMTTAGKTNQK----LEWAFSLYDVDGN 121
Query: 311 GALSPEEQARLFSLCPPECPPWTDREMRAMVAT 343
G +S E + P + + T
Sbjct: 122 GTISKNEVLEIVMAIFKMITPEDVKLLPDDENT 154
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 38.7 bits (90), Expect = 0.002
Identities = 18/161 (11%), Positives = 49/161 (30%), Gaps = 14/161 (8%)
Query: 163 ISDKQELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIR 222
++ K T + ++ + F L ++ F D + V
Sbjct: 16 LTRKTYFTEKEVQQWYKGFI--KDCPSGQLDAAGFQKIYKQFF---PFGDPTKFATFVFN 70
Query: 223 KNINDGVSANNCITLNGFLFLHNLFMQRGRSHTTWTVLRKFGYNEDLQISKE----FLHP 278
+ + I + F+ ++ + + + + D I++ +
Sbjct: 71 VFDENK---DGRIEFSEFIQALSVTSRGTLDEKLRWAFKLYDLDNDGYITRNEMLDIVDA 127
Query: 279 PLNIPATCTAELSDKGQ--QFLTTLFYRFDKDGDGALSPEE 317
+ ++ + + +F DK+ DG L+ +E
Sbjct: 128 IYQMVGNTVELPEEENTPEKRVDRIFAMMDKNADGKLTLQE 168
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 38.0 bits (89), Expect = 0.003
Identities = 20/167 (11%), Positives = 47/167 (28%), Gaps = 57/167 (34%)
Query: 151 QKAVLHPMAPIYISDKQELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLS 210
+ +++ ++ + + IK + +F D +++ LS +E+
Sbjct: 20 RNIIIN-----IMAHELSVINNHIKYINELFYKLDTNHNGSLSHREIYTVLASVGIKK-- 72
Query: 211 RDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQRGRSHTTWTVLRKFGYNEDLQ 270
D+ +++ + G + +
Sbjct: 73 ----WDINRILQALDIND---------RGNI--------------------TYT------ 93
Query: 271 ISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEE 317
EF+ + FL F + DKD DG +S +
Sbjct: 94 ---EFM--------AGCYRWKNIESTFLKAAFNKIDKDEDGYISKSD 129
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 36.9 bits (86), Expect = 0.003
Identities = 13/70 (18%), Positives = 21/70 (30%), Gaps = 9/70 (12%)
Query: 273 KEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPECPPW 332
K+F + +S K L +F D D G + +E
Sbjct: 27 KKFFQ---------ISGMSKKSSSQLKEIFRILDNDQSGFIEEDELKYFLQRFESGARVL 77
Query: 333 TDREMRAMVA 342
T E + +A
Sbjct: 78 TASETKTFLA 87
Score = 26.9 bits (60), Expect = 7.4
Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 168 ELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIR 222
++ + L IF++ D D + + EL F +R F++ + + K +
Sbjct: 34 GMSKKSSSQLKEIFRILDNDQSGFIEEDELKYFLQR-FESGARVLTASETKTFLA 87
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 37.8 bits (88), Expect = 0.003
Identities = 22/183 (12%), Positives = 52/183 (28%), Gaps = 37/183 (20%)
Query: 177 LTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCIT 236
+ F D D + + + + + + +
Sbjct: 6 IAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQA----------------- 48
Query: 237 LNGFLFLHNLFMQRGRSHTTWTVLRKFGYNEDLQIS-KEFLHPPLNIPATCTAELSDKGQ 295
L+ + + + D +I+ +EF+ + ++ +
Sbjct: 49 ------LYGGAEALWQ-----GLAGIADRDGDQRITREEFVTGAVKRLRDKPDRFAEMAR 97
Query: 296 QFLTTLFYRFDKDGDGALSPEEQARLFS---LCPPECPPWTDREMRAMVATNSKGWITMQ 352
FL D DGDGA++ + AR + + R+ A + T+ G +
Sbjct: 98 PFLHAALGVADTDGDGAVTVADTARALTAFGVPEDLA-----RQAAAALDTDGDGKVGET 152
Query: 353 GFL 355
+
Sbjct: 153 EIV 155
Score = 36.6 bits (85), Expect = 0.009
Identities = 9/60 (15%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
Query: 295 QQFLTTLFYRFDKDGDGALSPEE-QARLFSLCPPECPPWTDREMRAMVATNSKGWITMQG 353
++ + F FD+DG+G + + ++ +A+ W + G
Sbjct: 3 ERRIAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAG 62
Score = 28.2 bits (63), Expect = 5.1
Identities = 5/40 (12%), Positives = 8/40 (20%)
Query: 158 MAPIYISDKQELTPECIKALTRIFKVCDLDNDNLLSDKEL 197
L V D D D ++ +
Sbjct: 81 AVKRLRDKPDRFAEMARPFLHAALGVADTDGDGAVTVADT 120
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos taurus}
SCOP: a.39.1.5
Length = 193
Score = 37.9 bits (88), Expect = 0.005
Identities = 28/174 (16%), Positives = 56/174 (32%), Gaps = 14/174 (8%)
Query: 150 AQKAVLHPMAPIYISDKQELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPL 209
Q + L P + + + T I+ + F LS +E F
Sbjct: 3 KQNSKLRPEVMQDLLESTDFTEHEIQEWYKGFL--RDCPSGHLSMEEFKKIYGNFFPYG- 59
Query: 210 SRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQRGRSHTTWTVLRKFGYNEDL 269
D+ + + V R +G + I F+ ++ + + + +
Sbjct: 60 --DASKFAEHVFRTFDANG---DGTIDFREFIIALSVTSRGKLEQKLKWAFSMYDLDGNG 114
Query: 270 QISKE----FLHPPLNIPATCTAELSDKGQ--QFLTTLFYRFDKDGDGALSPEE 317
ISK + + ++ D+ + +F + D + DG LS EE
Sbjct: 115 YISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLEE 168
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A
1rk9_A 1g33_A
Length = 109
Score = 36.1 bits (84), Expect = 0.005
Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 9/70 (12%)
Query: 273 KEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPECPPW 332
K+F L K + +F+ DKD G + +E + +
Sbjct: 27 KKFFQ---------MVGLKKKSADDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDL 77
Query: 333 TDREMRAMVA 342
+ +E + ++A
Sbjct: 78 SAKETKTLMA 87
Score = 28.4 bits (64), Expect = 2.3
Identities = 9/54 (16%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 169 LTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIR 222
L + + ++F + D D + + EL + + F + S ++ K ++
Sbjct: 35 LKKKSADDVKKVFHILDKDKSGFIEEDELGSILKG-FSSDARDLSAKETKTLMA 87
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 37.2 bits (87), Expect = 0.005
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 295 QQFLTTLFYRFDKDGDGALSPEE-QARLFSLCPPECPPWTDREMRAMVATNSKGWITMQG 353
Q FL +F R DKD G +S E Q L + P T R + +M +K +
Sbjct: 6 QSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSE 65
Query: 354 FLCYW 358
F W
Sbjct: 66 FTGVW 70
Score = 32.2 bits (74), Expect = 0.25
Identities = 28/151 (18%), Positives = 48/151 (31%), Gaps = 26/151 (17%)
Query: 171 PECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVS 230
L +F+ D D ++SD EL P + V+ +I +
Sbjct: 3 LPDQSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFN---PVTVRSIISMFDREN-- 57
Query: 231 ANNCITLNGFLFLHNLFMQRGRSHTTW-TVLRKFGYNEDLQISKEFLHPPLNIPATCTA- 288
+ + F + W V R + + I K L +
Sbjct: 58 -KAGVNFSEFTGVWKYITD-------WQNVFRTYDRDNSGMIDKNELK------QALSGF 103
Query: 289 --ELSDKGQQFLTTLFYRFDKDGDGALSPEE 317
LSD QF L +FD+ G G ++ ++
Sbjct: 104 GYRLSD---QFHDILIRKFDRQGRGQIAFDD 131
Score = 28.7 bits (65), Expect = 3.5
Identities = 13/78 (16%), Positives = 22/78 (28%), Gaps = 14/78 (17%)
Query: 298 LTTLFYRFDKDGDGALSPEE-----QARLFSLCPPECPPWTDREMRAMVATNSKGWITMQ 352
+F +D+D G + E + L + +G I
Sbjct: 76 WQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFH-----DILIRKFDRQGRGQIAFD 130
Query: 353 GF--LCYWI--LTTLFNV 366
F C + LT +F
Sbjct: 131 DFIQGCIVLQRLTDIFRR 148
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 38.1 bits (88), Expect = 0.006
Identities = 22/136 (16%), Positives = 48/136 (35%), Gaps = 25/136 (18%)
Query: 10 NVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEM--------VPTHI 61
++LL+G GK+S + S++ + + + + E + ++
Sbjct: 3 GSKLLLMGRSGSGKSS-MRSIIFSNYS-----AFDTRRLGATIDVEHSHLRFLGNMTLNL 56
Query: 62 VDYSEVDQTVDELTEEIQKAH---VICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCL-- 116
D D ++ + + V L++ V D S + L + L
Sbjct: 57 WDCGGQDVFMENYFTKQKDHIFQMVQVLIH-VFDVESTEVLKD--IEIFAKALKQLRKYS 113
Query: 117 ---PIVLVGNKVDLVD 129
I ++ +K+DLV
Sbjct: 114 PDAKIFVLLHKMDLVQ 129
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 37.4 bits (87), Expect = 0.006
Identities = 25/151 (16%), Positives = 52/151 (34%), Gaps = 9/151 (5%)
Query: 168 ELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNIND 227
EL+ + F L+ E F +P + + V+ + +
Sbjct: 10 ELSATECHQWYKKFM--TECPSGQLTLYEFKQFFGLKNLSP---SANKYVEQMFETFDFN 64
Query: 228 GVSANNCITLNGFLFLHNLFMQRGRSHTTWTVLRKFGYNEDLQISK-EFLHPPLNIPATC 286
+ I ++ +L ++ + + + + I + E L+ I A
Sbjct: 65 K---DGYIDFMEYVAALSLVLKGKVDQKLRWYFKLYDVDGNGCIDRGELLNIIKAIRAIN 121
Query: 287 TAELSDKGQQFLTTLFYRFDKDGDGALSPEE 317
+ ++F +F + D +GDG LS EE
Sbjct: 122 RCNEAMTAEEFTNMVFDKIDINGDGELSLEE 152
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 37.3 bits (87), Expect = 0.006
Identities = 34/177 (19%), Positives = 63/177 (35%), Gaps = 30/177 (16%)
Query: 151 QKAVLHPMAPIYISDKQELTPECIKALTRIFKVCDLDNDNLLSDKEL-NAFQRRCFDAPL 209
+A + M + T E K LT+IF+ D + D L KEL +++
Sbjct: 22 AQAAMLFMG------SKLTTLEETKELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGD 75
Query: 210 SRDSL------EDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQRGRSHTT---WTVL 260
+ L +V +++ D N I + F+ + M + +
Sbjct: 76 TVSDLDSSQIEAEVDHILQSVDFDR---NGYIEYSEFV---TVCMDKQLLLSRERLLAAF 129
Query: 261 RKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEE 317
++F + +I+ E L E+ D + + DK+ DG + EE
Sbjct: 130 QQFDSDGSGKITNEELG-----RLFGVTEVDD---ETWHQVLQECDKNNDGEVDFEE 178
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 35.7 bits (83), Expect = 0.006
Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 9/70 (12%)
Query: 273 KEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPECPPW 332
++F T+ LS + +F D D G L +E +
Sbjct: 27 QKFFQ---------TSGLSKMSASQVKDIFRFIDNDQSGYLDGDELKYFLQKFQSDAREL 77
Query: 333 TDREMRAMVA 342
T+ E ++++
Sbjct: 78 TESETKSLMD 87
Score = 30.7 bits (70), Expect = 0.39
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 169 LTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIR 222
L+ + IF+ D D L EL F ++ F + + + K ++
Sbjct: 35 LSKMSASQVKDIFRFIDNDQSGYLDGDELKYFLQK-FQSDARELTESETKSLMD 87
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation,
calcium, metal binding protein; 1.95A {Gallus gallus}
PDB: 2kqy_A
Length = 109
Score = 35.7 bits (83), Expect = 0.006
Identities = 16/70 (22%), Positives = 22/70 (31%), Gaps = 9/70 (12%)
Query: 273 KEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPECPPW 332
K F T LS K + +F D+D G + EE
Sbjct: 28 KSFFS---------TVGLSSKTPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVL 78
Query: 333 TDREMRAMVA 342
T E +A +A
Sbjct: 79 TSAETKAFLA 88
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 37.5 bits (87), Expect = 0.007
Identities = 13/75 (17%), Positives = 21/75 (28%), Gaps = 10/75 (13%)
Query: 289 ELSDKGQQFLTTLFYRFDKDGDGALSPEE-QARL----FSLCPPECPPWTDREMRAMVAT 343
+ + F D+D G L E L P M + T
Sbjct: 44 TIPLDQYTRIYQWFMGVDRDRSGTLEINELMMGQFPGGIRLSPQTA-----LRMMRIFDT 98
Query: 344 NSKGWITMQGFLCYW 358
+ G I+ F+ +
Sbjct: 99 DFNGHISFYEFMAMY 113
Score = 34.0 bits (78), Expect = 0.089
Identities = 20/151 (13%), Positives = 33/151 (21%), Gaps = 55/151 (36%)
Query: 167 QELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNIN 226
+ + + + F D D L EL R S + ++R
Sbjct: 43 NTIPLDQYTRIYQWFMGVDRDRSGTLEINEL----MMGQFPGGIRLSPQTALRMMRIFDT 98
Query: 227 DGVSANNCITLNGFLFLHNLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATC 286
D N I+ F+ ++ + E
Sbjct: 99 DF---NGHISFYEFMAMYK-------------------FMELAY---------------- 120
Query: 287 TAELSDKGQQFLTTLFYRFDKDGDGALSPEE 317
LF + G L P E
Sbjct: 121 -------------NLFVMNARARSGTLEPHE 138
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 38.1 bits (88), Expect = 0.007
Identities = 26/177 (14%), Positives = 53/177 (29%), Gaps = 13/177 (7%)
Query: 11 VRILLLGDRHVGKTSLILSL--VSEEFPELVPSKAEEIT--IPPDVTPEMVPTHIVDYSE 66
+ + + G+ GK+S I +L + E + E+T P P + D
Sbjct: 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPG 129
Query: 67 VDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVD 126
+ T ++K + ++ S R + + + + V KVD
Sbjct: 130 IGSTNFPPDTYLEKMKFYEYDFFIII--SATRFKKNDIDIAKA-ISMMKKEFYFVRTKVD 186
Query: 127 LV------DYSTVESSAKTLKNISEMFYYAQKAVLHPMAPIYISDKQELTPECIKAL 177
K L++I + PI++ + + L
Sbjct: 187 SDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVL 243
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 37.1 bits (86), Expect = 0.007
Identities = 23/155 (14%), Positives = 51/155 (32%), Gaps = 8/155 (5%)
Query: 163 ISDKQELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIR 222
D++ + + R F L + E L++ + + + V
Sbjct: 10 AGDQKAVPTQETHVWYRTFM--MEYPSGLQTLHEFKTLLGLQG---LNQKANKHIDQVYN 64
Query: 223 KNINDGVSANNCITLNGFLFLHNLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNI 282
+ + + F+ NL MQ + + + + I K L
Sbjct: 65 TFDTNK---DGFVDFLEFIAAVNLIMQEKMEQKLKWYFKLYDADGNGSIDKNELLDMFMA 121
Query: 283 PATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEE 317
+ + ++F+ +F++ D + DG L+ EE
Sbjct: 122 VQALNGQQTLSPEEFINLVFHKIDINNDGELTLEE 156
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 38.0 bits (88), Expect = 0.008
Identities = 29/107 (27%), Positives = 41/107 (38%), Gaps = 11/107 (10%)
Query: 59 THIVDYSEVDQTVDELTEEIQKA-HVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLP 117
H + +V T D+ + LV +VD D S WLP L + +
Sbjct: 44 KHYNEIQDVSLTDDDFLRILNGIGKSDALVVKIVD--IFDFNGS-WLPGLHRFVGNN--K 98
Query: 118 IVLVGNKVDLVDYSTVESSAKTLKNISEMFYYAQKAVLHPMAPIYIS 164
++LVGNK DL+ S K Y A++ L P IS
Sbjct: 99 VLLVGNKADLIPKSVKHDKVKHWMR-----YSAKQLGLKPEDVFLIS 140
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 36.8 bits (85), Expect = 0.011
Identities = 26/159 (16%), Positives = 50/159 (31%), Gaps = 6/159 (3%)
Query: 163 ISDKQELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIR 222
D LT + I R F + + + + + R
Sbjct: 39 YQDLTFLTKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILSLPELKANPFKERICR 98
Query: 223 KNINDGVSANNCITLNGFLFLHNLFMQRGRSHTTWTVL-RKFGYNEDLQISKEFLHPPLN 281
+ A + ++ FL L ++F R F +++D +++E L +N
Sbjct: 99 --VFSTSPAKDSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLVN 156
Query: 282 --IPATCTAELSDKG-QQFLTTLFYRFDKDGDGALSPEE 317
LS +Q + + D D DG ++ E
Sbjct: 157 CLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSE 195
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 36.5 bits (85), Expect = 0.012
Identities = 20/167 (11%), Positives = 48/167 (28%), Gaps = 58/167 (34%)
Query: 151 QKAVLHPMAPIYISDKQELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLS 210
QK + +A Q+ ++ L F V D D ++ ++L +
Sbjct: 35 QKLAMTIIA-------QQSNDYDVEKLKSTFLVLDEDGKGYITKEQLKKGLEK-----DG 82
Query: 211 RDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQRGRSHTTWTVLRKFGYNEDLQ 270
+ +++ + + ++ +G + +
Sbjct: 83 LKLPYNFDLLLDQ-----IDSDG----SGKI--------------------DYT------ 107
Query: 271 ISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEE 317
EF+ + ++ + F FD D DG ++ E
Sbjct: 108 ---EFI--------AAALDRKQLSKKLIYCAFRVFDVDNDGEITTAE 143
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 34.3 bits (79), Expect = 0.014
Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 8/71 (11%)
Query: 288 AELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPECPPWTDREMRAMVA---TN 344
A+ + L ++F D + G L EE +LC + A+ +
Sbjct: 19 ADGDGEELARLRSVFAACDANRSGRLEREE---FRALCTEL--RVRPADAEAVFQRLDAD 73
Query: 345 SKGWITMQGFL 355
G IT Q F
Sbjct: 74 RDGAITFQEFA 84
Score = 32.7 bits (75), Expect = 0.052
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 168 ELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDV 217
+ E + L +F CD + L +E + C + + E V
Sbjct: 20 DGDGEELARLRSVFAACDANRSGRLEREEF---RALCTELRVRPADAEAV 66
Score = 29.6 bits (67), Expect = 0.70
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 298 LTTLFYRFDKDGDGALSPEEQARLF 322
+F R D D DGA++ +E AR F
Sbjct: 63 AEAVFQRLDADRDGAITFQEFARGF 87
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+)
requirement, hydrolase chimera; 2.80A {Rattus
norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Length = 900
Score = 37.1 bits (85), Expect = 0.017
Identities = 39/206 (18%), Positives = 65/206 (31%), Gaps = 32/206 (15%)
Query: 174 IKALTRIFKVCDLDNDNLLSDKEL-NAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSAN 232
I+ IF+ DLD +S E+ A + F L + IV R ++
Sbjct: 606 IRNYLTIFRKFDLDKSGSMSAYEMRMAIEAAGFK--LPCQLHQ--VIVARFADDEL---- 657
Query: 233 NCITLNGFL------------FLHNLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPL 280
I + F+ F G F L + E H
Sbjct: 658 -IIDFDNFVRCLVRLEILFKIFKQLDPENTGTIQLDLISWLSFSVLGKLAAAIEHHHHHH 716
Query: 281 NIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPECPPW-------- 332
+ A S++ +QF LF + D +S E + + P
Sbjct: 717 MHYSNIEANESEEERQF-RKLFVQLA-GDDMEVSATELMNILNKVVTRHPDLKTDGFGID 774
Query: 333 TDREMRAMVATNSKGWITMQGFLCYW 358
T R M A++ +++ G + + F W
Sbjct: 775 TCRSMVAVMDSDTTGKLGFEEFKYLW 800
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 35.2 bits (81), Expect = 0.026
Identities = 20/161 (12%), Positives = 47/161 (29%), Gaps = 14/161 (8%)
Query: 163 ISDKQELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIR 222
+ I+ + F L+ ++ ++ F D + V
Sbjct: 16 LKQSTYFDRREIQQWHKGFL--RDCPSGQLAREDFVKIYKQFFPFGSPEDFANHLFTVFD 73
Query: 223 KNINDGVSANNCITLNGFLFLHNLFMQRGRSHTTWTVLRKFGYNEDLQISKE----FLHP 278
K+ N I F+ + + + + N D I+ + +
Sbjct: 74 KD------NNGFIHFEEFITVLSTTSRGTLEEKLSWAFELYDLNHDGYITFDEMLTIVAS 127
Query: 279 PLNIPATCTAELSDKGQ--QFLTTLFYRFDKDGDGALSPEE 317
+ + D+ + +F DK+ DG ++ +E
Sbjct: 128 VYKMMGSMVTLNEDEATPEMRVKKIFKLMDKNEDGYITLDE 168
Score = 32.5 bits (74), Expect = 0.22
Identities = 20/144 (13%), Positives = 43/144 (29%), Gaps = 15/144 (10%)
Query: 192 LSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFL-FLHNLFMQR 250
LS +L ++ + R ++ ++ G + F+ F
Sbjct: 8 LSKDDLTCLKQSTY---FDRREIQQWHKGFLRDCPSGQ-----LAREDFVKIYKQFFPFG 59
Query: 251 GRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGD 310
+ F + + I E L+ T L +K L+ F +D + D
Sbjct: 60 SPEDFANHLFTVFDKDNNGFIHFEEFITVLST--TSRGTLEEK----LSWAFELYDLNHD 113
Query: 311 GALSPEEQARLFSLCPPECPPWTD 334
G ++ +E + +
Sbjct: 114 GYITFDEMLTIVASVYKMMGSMVT 137
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 35.6 bits (82), Expect = 0.029
Identities = 26/161 (16%), Positives = 61/161 (37%), Gaps = 14/161 (8%)
Query: 163 ISDKQELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIR 222
+ + + T + ++ L R FK + +++++ + F DS +
Sbjct: 55 LEAQSKFTKKELQILYRGFK--NECPSGVVNEETFKEIYSQFFP---QGDSTTYAHFLFN 109
Query: 223 KNINDGVSANNCITLNGFLFLHNLFMQRGRSHTTWTVLRKFGYNEDLQISKE----FLHP 278
D N ++ F+ ++ ++ + N+D I+KE +
Sbjct: 110 AFDTDH---NGAVSFEDFIKGLSILLRGTVQEKLNWAFNLYDINKDGYITKEEMLDIMKA 166
Query: 279 PLNIPATCTAELSDKGQ--QFLTTLFYRFDKDGDGALSPEE 317
++ CT + + Q + T F + DK+ DG ++ +E
Sbjct: 167 IYDMMGKCTYPVLKEDAPRQHVETFFQKMDKNKDGVVTIDE 207
Score = 33.3 bits (76), Expect = 0.17
Identities = 19/149 (12%), Positives = 46/149 (30%), Gaps = 17/149 (11%)
Query: 192 LSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFL-FLHNLFMQR 250
+ L + + ++ L+ + + GV + F F Q
Sbjct: 47 HRPEALELLEAQSK---FTKKELQILYRGFKNECPSGV-----VNEETFKEIYSQFFPQG 98
Query: 251 GRSHTTWTVLRKFGYNEDLQIS-KEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDG 309
+ + F + + +S ++F+ + + +K L F +D +
Sbjct: 99 DSTTYAHFLFNAFDTDHNGAVSFEDFIK---GLSILLRGTVQEK----LNWAFNLYDINK 151
Query: 310 DGALSPEEQARLFSLCPPECPPWTDREMR 338
DG ++ EE + T ++
Sbjct: 152 DGYITKEEMLDIMKAIYDMMGKCTYPVLK 180
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 35.3 bits (81), Expect = 0.031
Identities = 26/126 (20%), Positives = 41/126 (32%), Gaps = 14/126 (11%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTP----EMVPTHIVDYSEV 67
RILL+G R GK+S+ + + P E T V I D+
Sbjct: 22 RILLMGLRRSGKSSIQKVVFHKMSPNETLF--LESTNKIYKDDISNSSFVNFQIWDFPGQ 79
Query: 68 DQTVDELTEE---IQKAHVICLVYSVVDDA--SIDRLSSHWLPFLRNCLVDTCLPIVLVG 122
D + + + V DD ++ RL + D V +
Sbjct: 80 MDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHI-TVSKAYKVNPDMNF-EVFI- 136
Query: 123 NKVDLV 128
+KVD +
Sbjct: 137 HKVDGL 142
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 35.7 bits (82), Expect = 0.034
Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 12/123 (9%)
Query: 59 THIVDYSEVDQTVDELTEEIQK-AHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLP 117
H + +V D+ + + LV ++VD D S ++P L D P
Sbjct: 46 KHYNEVQDVPLDDDDFLSMLHRIGESKALVVNIVD--IFDFNGS-FIPGLPRFAADN--P 100
Query: 118 IVLVGNKVDLVDYSTVESSAKTLKNISEMFYYAQKAVLHPMAPIYIS-DKQELTPECIKA 176
I+LVGNK DL+ S K K + M A++ L P+ +S K + ++A
Sbjct: 101 ILLVGNKADLLP-----RSVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEA 155
Query: 177 LTR 179
+ R
Sbjct: 156 INR 158
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 33.0 bits (76), Expect = 0.036
Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 6/72 (8%)
Query: 290 LSDKGQQFLTTLFYRFDKDGDGALSPEE-QARLFSLCPPECPP--WTDREMRAMVA---T 343
++ K + L F + D +GDG ++ E Q + +L + ++
Sbjct: 1 MACKVKAELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADK 60
Query: 344 NSKGWITMQGFL 355
NS G I+ + FL
Sbjct: 61 NSDGKISKEEFL 72
Score = 27.2 bits (61), Expect = 4.0
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 169 LTPECIKALTRIFKVCDLDNDNLLSDKEL-NAFQRRCFDAPLSRDSL-EDVKIVIR 222
+ + L FK D + D ++ EL LS+D + E +I+
Sbjct: 1 MACKVKAELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIK 56
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 33.8 bits (78), Expect = 0.037
Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 9/70 (12%)
Query: 273 KEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPECPPW 332
K F L+ K + F+ D+D G + +E +
Sbjct: 28 KAFFA---------KVGLTAKSADDIKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARAL 78
Query: 333 TDREMRAMVA 342
TD E +A +
Sbjct: 79 TDAETKAFLK 88
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping,
EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB:
1h4b_A
Length = 86
Score = 32.6 bits (75), Expect = 0.052
Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 12/89 (13%)
Query: 167 QELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNIN 226
E TP+ I RIFK D + D +S EL + L + ++V+ ++ +
Sbjct: 3 AEDTPQDIADRERIFKRFDTNGDGKISSSELGDALKT-----LGSVTPDEVRRMMAEIDT 57
Query: 227 DGVSANNCITLNGFLFLHNLFMQRGRSHT 255
DG + I+ + F + R
Sbjct: 58 DG---DGFISFDEFTDF----ARANRGLV 79
Score = 32.2 bits (74), Expect = 0.069
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Query: 287 TAELSDKGQQFLTTLFYRFDKDGDGALSPEE-QARLFSLCPPECPPWTDREMRAMVA--- 342
AE + + +F RFD +GDG +S E L +L T E+R M+A
Sbjct: 2 AAEDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLGSV-----TPDEVRRMMAEID 56
Query: 343 TNSKGWITMQGFL 355
T+ G+I+ F
Sbjct: 57 TDGDGFISFDEFT 69
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A;
EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 33.2 bits (76), Expect = 0.055
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 6/61 (9%)
Query: 298 LTTLFYRFDKDGDGALSPEEQARLFSLCPPECPPWTDREMRAMVA---TNSKGWITMQGF 354
+T F FD +S EE ++C TD + + N+KG + F
Sbjct: 26 ITQEFENFDTMKTNTISREE---FRAICNRRVQILTDEQFDRLWNEMPVNAKGRLKYPDF 82
Query: 355 L 355
L
Sbjct: 83 L 83
Score = 27.8 bits (62), Expect = 4.1
Identities = 8/39 (20%), Positives = 11/39 (28%)
Query: 301 LFYRFDKDGDGALSPEEQARLFSLCPPECPPWTDREMRA 339
L+ + G L + FS P T A
Sbjct: 65 LWNEMPVNAKGRLKYPDFLSRFSSETAATPMATGDSAVA 103
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15,
EPS15; EH domain, EF-hand, solution structure, S100
protein; NMR {Mus musculus} SCOP: a.39.1.6
Length = 99
Score = 32.9 bits (75), Expect = 0.063
Identities = 9/65 (13%), Positives = 20/65 (30%), Gaps = 2/65 (3%)
Query: 290 LSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPECPPWTDREMRAMVATNSKGWI 349
G + + + G + + A P ++ + T+ KG +
Sbjct: 5 QLSSGNPVYEKYYRQVEAGNTGRVLALDAAAFLKKS--GLPDLILGKIWDLADTDGKGVL 62
Query: 350 TMQGF 354
+ Q F
Sbjct: 63 SKQEF 67
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 34.6 bits (79), Expect = 0.066
Identities = 24/161 (14%), Positives = 58/161 (36%), Gaps = 14/161 (8%)
Query: 163 ISDKQELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIR 222
+ + + T + +++L R FK + L+ + + F D+ +
Sbjct: 82 LQAQTKFTKKELQSLYRGFK--NECPTGLVDEDTFKLIYSQFFP---QGDATTYAHFLFN 136
Query: 223 KNINDGVSANNCITLNGFLFLHNLFMQRGRSHTTWTVLRKFGYNEDLQISKE----FLHP 278
DG N I F+ ++ ++ + N+D I+KE +
Sbjct: 137 AFDADG---NGAIHFEDFVVGLSILLRGTVHEKLKWAFNLYDINKDGCITKEEMLAIMKS 193
Query: 279 PLNIPATCTAELSDKGQ--QFLTTLFYRFDKDGDGALSPEE 317
++ T + + + + F + D++ DG ++ +E
Sbjct: 194 IYDMMGRHTYPILREDAPLEHVERFFQKMDRNQDGVVTIDE 234
Score = 33.9 bits (77), Expect = 0.11
Identities = 21/149 (14%), Positives = 47/149 (31%), Gaps = 17/149 (11%)
Query: 192 LSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGF-LFLHNLFMQR 250
+ L+ Q + ++ L+ + + G + + F L F Q
Sbjct: 74 HQPEGLDQLQAQTK---FTKKELQSLYRGFKNECPTG-----LVDEDTFKLIYSQFFPQG 125
Query: 251 GRSHTTWTVLRKFGYNEDLQIS-KEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDG 309
+ + F + + I ++F+ + + +K L F +D +
Sbjct: 126 DATTYAHFLFNAFDADGNGAIHFEDFVV---GLSILLRGTVHEK----LKWAFNLYDINK 178
Query: 310 DGALSPEEQARLFSLCPPECPPWTDREMR 338
DG ++ EE + T +R
Sbjct: 179 DGCITKEEMLAIMKSIYDMMGRHTYPILR 207
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 34.2 bits (79), Expect = 0.073
Identities = 29/156 (18%), Positives = 50/156 (32%), Gaps = 17/156 (10%)
Query: 168 ELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNIND 227
I+ L R F+ D D L E + L + + + V RK +
Sbjct: 30 SRGASGIQGLARFFRQLDRDGSRSLDADEFRQGLAK-LGLVLDQ---AEAEGVCRKWDRN 85
Query: 228 GVSANNCITLNGFLFLHNLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNIPATCT 287
G + + L FL M + R K + D ++ + L + A
Sbjct: 86 G---SGTLDLEEFLRALRPPMSQAREAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPK 142
Query: 288 AELSDKG-----QQFLTTLFYRFDK-DGDGALSPEE 317
+ ++FL FD + DG ++ E
Sbjct: 143 VRSGEWTEDEVLRRFLDN----FDSSEKDGQVTLAE 174
Score = 30.8 bits (70), Expect = 0.92
Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 12/61 (19%)
Query: 301 LFYRFDKDGDGALSPEE--QA-RLFSLCPPECPPWTDREMRAMVA---TNSKGWITMQGF 354
F + D+DG +L +E Q L E + N G + ++ F
Sbjct: 42 FFRQLDRDGSRSLDADEFRQGLAKLGLVL------DQAEAEGVCRKWDRNGSGTLDLEEF 95
Query: 355 L 355
L
Sbjct: 96 L 96
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP:
a.39.1.10
Length = 78
Score = 31.8 bits (73), Expect = 0.082
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 9/58 (15%)
Query: 302 FYRFDKDGDGALSPEE-QARLFSLCPPECPPWTDREMRAMVA---TNSKGWITMQGFL 355
F RFD +GDG +S E L +L + E++ M+A T+ G+I F+
Sbjct: 9 FKRFDTNGDGKISLSELTDALRTLGST-----SADEVQRMMAEIDTDGDGFIDFNEFI 61
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 33.6 bits (77), Expect = 0.099
Identities = 26/169 (15%), Positives = 54/169 (31%), Gaps = 15/169 (8%)
Query: 155 LHPMAPIYISDKQELTPECIKALTRIFK--VCDLDNDNLLSDKELNAFQRRCFDAPLSRD 212
P ++ T E ++AL +FK + +D L+ +E R +R
Sbjct: 17 PGYEDPELLASVTPFTVEEVEALYELFKKLSSSIIDDGLIHKEEFQLALFR----NRNRR 72
Query: 213 SLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQRG--RSHTTWTVLRKFGYNEDLQ 270
+L + N I F+ +F + + + +
Sbjct: 73 NLF-ADRIFDVFDVKR---NGVIEFGEFVRSLGVFHPSAPVHEKVKFA-FKLYDLRQTGF 127
Query: 271 ISK-EFLHPPLNIPATCTAELSDKG-QQFLTTLFYRFDKDGDGALSPEE 317
I + E + + LS+ + + F + D+ DG + +E
Sbjct: 128 IEREELKEMVVALLHESELVLSEDMIEVMVDKAFVQADRKNDGKIDIDE 176
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 33.6 bits (77), Expect = 0.099
Identities = 8/56 (14%), Positives = 18/56 (32%), Gaps = 4/56 (7%)
Query: 301 LFYRFDKDGDGALSPEEQARLFSLCPPECPPWTDREMRAMVATNSKGWITMQGFLC 356
F D++ G LS + ++ +L + + + GF+
Sbjct: 34 RFRALDRNKKGYLSRMDLQQIGALAVNP----LGDRIIESFFPDGSQRVDFPGFVR 85
Score = 31.6 bits (72), Expect = 0.46
Identities = 29/155 (18%), Positives = 44/155 (28%), Gaps = 36/155 (23%)
Query: 163 ISDKQELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIR 222
I + + + L F+ D + LS +L PL +E
Sbjct: 17 IRRETGFSQASLLRLHHRFRALDRNKKGYLSRMDLQQI-GALAVNPLGDRIIESFFP--- 72
Query: 223 KNINDGVSANNCITLNGFLFLHNLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLNI 282
DG + + GF+ VL F ED + P
Sbjct: 73 ----DG---SQRVDFPGFV----------------RVLAHFRPVEDEDTETQDPKKP--- 106
Query: 283 PATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEE 317
E + + L F +D D DG +S E
Sbjct: 107 ------EPLNSRRNKLHYAFQLYDLDRDGKISRHE 135
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 33.6 bits (77), Expect = 0.10
Identities = 29/159 (18%), Positives = 50/159 (31%), Gaps = 48/159 (30%)
Query: 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEV 67
N +I+ G GKT+ + + S+ K E +++ E T D+ +
Sbjct: 12 EINFKIVYYGPGLSGKTTNLKWIYSKVPEGR---KGEMVSLA----TEDERTLFFDFLPL 64
Query: 68 DQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNC-----LVDTC------- 115
D E++ +Y+V ++ LR + D+
Sbjct: 65 D------IGEVKGFKTRFHLYTV---PGQVFYNASRKLILRGVDGIVFVADSAPNRLRAN 115
Query: 116 --------------------LPIVLVGNKVDLVDYSTVE 134
+PIV+ NK DL D VE
Sbjct: 116 AESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVE 154
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 33.3 bits (77), Expect = 0.11
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 17/82 (20%)
Query: 76 EEIQKAHVICLVYSVVDDAS--IDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLV----- 128
+EI++A + + D + + P L LPI +V NK D+
Sbjct: 79 QEIEQADRVLFMV----DGTTTDAVDPAEIWPEFIARLPAK-LPITVVRNKADITGETLG 133
Query: 129 -----DYSTVESSAKTLKNISE 145
++ + SA+T + +
Sbjct: 134 MSEVNGHALIRLSARTGEGVDV 155
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 34.5 bits (78), Expect = 0.11
Identities = 6/60 (10%), Positives = 20/60 (33%)
Query: 295 QQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPECPPWTDREMRAMVATNSKGWITMQGF 354
Q ++ + + DK+ D ++ +E + R++ + + +
Sbjct: 10 QHWIHSCLRKADKNKDNKMNFKELKDFLKELNIQVDDGYARKIFRECDHSQTDSLEDEEI 69
>2fna_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus}
SCOP: a.4.5.11 c.37.1.20
Length = 357
Score = 34.3 bits (78), Expect = 0.12
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 378 YPITDRENQTSGVLVTREKQVDLLKKQTTRNVYVCHVIGNRSTGKTALCQSILRK 432
P +R++ REK+++ LK V +G R TGK+++ + + +
Sbjct: 7 SPKDNRKD-----FFDREKEIEKLKGLRAPITLV---LGLRRTGKSSIIKIGINE 53
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 33.0 bits (75), Expect = 0.12
Identities = 8/52 (15%), Positives = 16/52 (30%), Gaps = 1/52 (1%)
Query: 165 DKQELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLED 216
E P ++A + DL+ + + L P + L+
Sbjct: 38 SNDEDLPSKLEAFKVKYMEFDLNGNGDIDIMSLKRM-LEKLGVPKTHLELKR 88
Score = 31.4 bits (71), Expect = 0.42
Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 11/75 (14%)
Query: 270 QISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEE-QARLFSL-CPP 327
I+K+FL + P E + + FD +G+G + + L L P
Sbjct: 26 GINKQFL----DDPKYSNDEDLPSKLEAFKVKYMEFDLNGNGDIDIMSLKRMLEKLGVPK 81
Query: 328 ECPPWTDREMRAMVA 342
T E++ ++
Sbjct: 82 -----THLELKRLIR 91
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 33.2 bits (76), Expect = 0.14
Identities = 29/180 (16%), Positives = 51/180 (28%), Gaps = 46/180 (25%)
Query: 163 ISDKQELTPECIKALTRIFKVCDLDNDNLLSDKEL--------NAFQRRCFDAPLSRDSL 214
I + + I L F D + LS ++ N R +A +
Sbjct: 17 IKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDRIINA-FFSEG- 74
Query: 215 EDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQRGRSHTTWTVL-------------- 260
+ + GF+ F + + V
Sbjct: 75 -----------------EDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHF 117
Query: 261 --RKFGYNEDLQISKEFLHPPLNIPATCTAELSDK-GQQFLTTLFYRFDKDGDGALSPEE 317
R + ++D +IS++ L L +SD+ D+DGD A+S E
Sbjct: 118 AFRLYDLDKDDKISRDELLQVLR--MMVGVNISDEQLGSIADRTIQEADQDGDSAISFTE 175
Score = 31.3 bits (71), Expect = 0.66
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 301 LFYRFDKDGDGALSPEEQARLFSLCPPECPPWTDREMRAMVATNSKGWITMQGFLC 356
F DK +G LS E+ R+ L P DR + + + + +GF+
Sbjct: 34 RFTSLDKGENGTLSREDFQRIPELAI---NPLGDRIIN-AFFSEGEDQVNFRGFMR 85
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 33.2 bits (76), Expect = 0.14
Identities = 25/167 (14%), Positives = 57/167 (34%), Gaps = 19/167 (11%)
Query: 163 ISDKQELTPECIKALTRIFKV-CDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVI 221
+ + L +K + L E +R F P + ++ + V+ +
Sbjct: 10 AEENGAVGAADAAQLQEWYKKFLEECPSGTLFMHEF----KRFFKVPDNEEATQYVEAMF 65
Query: 222 RKNINDGVSANNCITLNGFLFLHNLFMQRGRSHTTWTVLRKFGYNEDLQISKE------- 274
R +G +N I ++ NL ++ H + + + + I ++
Sbjct: 66 RAFDTNG---DNTIDFLEYVAALNLVLRGTLEHKLKWTFKIYDKDRNGCIDRQELLDIVE 122
Query: 275 ---FLHPPLNIPATCTAELSDKG-QQFLTTLFYRFDKDGDGALSPEE 317
L ++ + ++ + +F D++GDG LS E
Sbjct: 123 SIYKLKKACSVEVEAEQQGKLLTPEEVVDRIFLLVDENGDGQLSLNE 169
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 33.9 bits (77), Expect = 0.14
Identities = 20/122 (16%), Positives = 40/122 (32%), Gaps = 10/122 (8%)
Query: 13 ILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVD 72
+LL+G R GK+S+ + P + ++ +++ +
Sbjct: 2 VLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFSTLIDLAVMELPGQLNYFE 61
Query: 73 E-LTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTC-----LPIVLVGNKVD 126
E V LVY V+D + L + + I ++ +KVD
Sbjct: 62 PSYDSERLFKSVGALVY-VIDSQDEYINAITN---LAMIIEYAYKVNPSINIEVLIHKVD 117
Query: 127 LV 128
+
Sbjct: 118 GL 119
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 30.6 bits (70), Expect = 0.16
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 298 LTTLFYRFDKDGDGALSPEE 317
LF D +GDGA+S EE
Sbjct: 2 AEALFKEIDVNGDGAVSYEE 21
Score = 27.5 bits (62), Expect = 2.1
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 298 LTTLFYRFDKDGDGALSPEEQARLFS 323
L +F D DG+G + E A+ +
Sbjct: 38 LQLIFKSIDADGNGEIDQNEFAKFYG 63
>2l5y_A Stromal interaction molecule 2; EF-hand, SAM domain, store OPE
calcium entry, signaling protein; NMR {Homo sapiens}
Length = 150
Score = 32.7 bits (74), Expect = 0.17
Identities = 23/112 (20%), Positives = 38/112 (33%), Gaps = 10/112 (8%)
Query: 284 ATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPECPPWTDREMRAMVAT 343
+ E + L T+ + D D DG + EE E + D +
Sbjct: 3 HMASTEEDRFSLEALQTIHKQMDDDKDGGIEVEESDEFIR----EDMKYKDATNKHSHLH 58
Query: 344 NSKGWITMQGFLCYWILTTLFN--VNKTLEYLAYF----GYPITDRENQTSG 389
IT++ W + + N + TL++L F Y R+N G
Sbjct: 59 REDKHITIEDLWKRWKTSEVHNWTLEDTLQWLIEFVELPQYEKNFRDNNVKG 110
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 32.6 bits (75), Expect = 0.21
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 7/47 (14%)
Query: 151 QKAVLHPMAPIYISDKQELTPECIKALTRIFKVCDLDNDNLLSDKEL 197
+K L +A + L I L IF D+DN LS +E+
Sbjct: 40 KKIALTIIA-------KHLCDVEINNLRNIFIALDVDNSGTLSSQEI 79
Score = 31.8 bits (73), Expect = 0.38
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 289 ELSDKGQQFLTTLFYRFDKDGDGALSPEE 317
L D L +F D D G LS +E
Sbjct: 50 HLCDVEINNLRNIFIALDVDNSGTLSSQE 78
Score = 28.7 bits (65), Expect = 4.4
Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 24/77 (31%)
Query: 258 TVLRKFGYN---EDLQ-------------IS-KEFLHPPLNIPATCTAELSDKGQQFLTT 300
L+K GY D+ I +FL A + + ++
Sbjct: 81 DGLKKIGYQKIPPDIHQVLRDIDSNASGQIHYTDFL-------AATIDKQTYLKKEVCLI 133
Query: 301 LFYRFDKDGDGALSPEE 317
F FD DG+G +S EE
Sbjct: 134 PFKFFDIDGNGKISVEE 150
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 32.2 bits (74), Expect = 0.22
Identities = 33/167 (19%), Positives = 50/167 (29%), Gaps = 57/167 (34%)
Query: 157 PMAPIYISDKQELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSL-- 214
M + L+ E I F + D D +S KEL R L
Sbjct: 2 SMTDQQAEARAFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMR----------MLGQ 51
Query: 215 ----EDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQRGRSHTTWTVLRKFGYNEDLQ 270
E++ +I + DG + I FL + M+ +
Sbjct: 52 NPTKEELDAIIEEVDEDG---SGTIDFEEFLVMMVRQMK----------------EDAKG 92
Query: 271 ISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEE 317
S+E EL++ F FDK+ DG + EE
Sbjct: 93 KSEE--------------ELAN--------CFRIFDKNADGFIDIEE 117
Score = 29.9 bits (68), Expect = 1.3
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 12/74 (16%)
Query: 288 AELSDKGQQFLTTLFYRFDKDGDGALSPEEQA---RLFSLCPPECPPWTDREMRAMVA-- 342
A LS++ F FD DG G +S +E R+ P T E+ A++
Sbjct: 12 AFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNP------TKEELDAIIEEV 65
Query: 343 -TNSKGWITMQGFL 355
+ G I + FL
Sbjct: 66 DEDGSGTIDFEEFL 79
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein;
1.90A {Homo sapiens}
Length = 107
Score = 31.2 bits (71), Expect = 0.23
Identities = 13/88 (14%), Positives = 27/88 (30%), Gaps = 11/88 (12%)
Query: 166 KQELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNI 225
E P ++ + DL+ + + L + P + L+ +I +
Sbjct: 23 SDEDLPSKLEGFKEKYMEFDLNGNGDIDIMSLKRMLEK-LGVPKTHLELKK---LIGEVS 78
Query: 226 NDGVSANNCITLNGFLFLHNLFMQRGRS 253
+ + FL + M RS
Sbjct: 79 SGS---GETFSYPDFLRM----MLGKRS 99
Score = 30.8 bits (70), Expect = 0.35
Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 11/75 (14%)
Query: 270 QISKEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLF-SL-CPP 327
+I+K+FL + P + E + + FD +G+G + R+ L P
Sbjct: 10 EINKQFL----DDPKYSSDEDLPSKLEGFKEKYMEFDLNGNGDIDIMSLKRMLEKLGVPK 65
Query: 328 ECPPWTDREMRAMVA 342
T E++ ++
Sbjct: 66 -----THLELKKLIG 75
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 31.7 bits (73), Expect = 0.24
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 301 LFYRFDKDGDGALSPEE 317
LF D +GDGA+S EE
Sbjct: 5 LFKEIDVNGDGAVSYEE 21
Score = 29.8 bits (68), Expect = 1.2
Identities = 16/77 (20%), Positives = 23/77 (29%), Gaps = 21/77 (27%)
Query: 258 TVLRKFGYN---EDLQ-------------IS-KEFLHPPLNIPATCTAELSDKGQQFLTT 300
+ K + LQ I EF + + + L
Sbjct: 24 AFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFA----KFYGSIQGQDLSDDKIGLKV 79
Query: 301 LFYRFDKDGDGALSPEE 317
L+ D DGDG L+ EE
Sbjct: 80 LYKLMDVDGDGKLTKEE 96
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 32.4 bits (74), Expect = 0.25
Identities = 24/152 (15%), Positives = 50/152 (32%), Gaps = 32/152 (21%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVD 68
I++ G ++ GKTSL+ L ++ V S+ + +VD+
Sbjct: 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA----ADYDGSGVTLVDFPGHV 102
Query: 69 QTVDELTEEIQKAHVIC--LVYSVVDDASIDR------------LSSHWLPFLRNCLVDT 114
+ +L++ ++ L++ +VD + LS
Sbjct: 103 KLRYKLSDYLKTRAKFVKGLIF-MVDSTVDPKKLTTTAEFLVDILSITESSCENGI---- 157
Query: 115 CLPIVLVGNKVDLVDYSTVESSAKTLKNISEM 146
I++ NK +L A+ I +
Sbjct: 158 --DILIACNKSELFT-------ARPPSKIKDA 180
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 32.6 bits (74), Expect = 0.28
Identities = 21/161 (13%), Positives = 54/161 (33%), Gaps = 14/161 (8%)
Query: 163 ISDKQELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIR 222
+ + T ++ L R FK + +++++ + F D+ +
Sbjct: 42 LEAQTNFTKRELQVLYRGFK--NECPSGVVNEETFKQIYAQFFP---HGDASTYAHYLFN 96
Query: 223 KNINDGVSANNCITLNGFLFLHNLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLN- 281
+ F+ ++ ++ + N+D I+KE + +
Sbjct: 97 AFDTTQ---TGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKA 153
Query: 282 ----IPATCTAELSDKG-QQFLTTLFYRFDKDGDGALSPEE 317
+ L + +Q + F + DK+ DG ++ +E
Sbjct: 154 IYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDE 194
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding
protein; NMR {Homo sapiens} SCOP: a.39.1.7
Length = 103
Score = 31.1 bits (70), Expect = 0.29
Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 17/80 (21%)
Query: 293 KGQQF-LTTLFYRFDKDGDGALSPEEQARLFSLC---------PPECPPWTDREMRAMVA 342
+F T F D + DG L +E LF+ + + E M
Sbjct: 16 DPNRFNPKTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMRE 75
Query: 343 -------TNSKGWITMQGFL 355
TN +T++ FL
Sbjct: 76 HVMKNVDTNQDRLVTLEEFL 95
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural
genomics, protein structure initiative; NMR {Arabidopsis
thaliana} SCOP: a.39.1.5
Length = 67
Score = 29.8 bits (68), Expect = 0.32
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 302 FYRFDKDGDGALSPEE 317
F +FDK+ DG LS +E
Sbjct: 7 FEKFDKNKDGKLSLDE 22
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of
cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB:
1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S
3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Length = 173
Score = 32.0 bits (73), Expect = 0.33
Identities = 26/173 (15%), Positives = 50/173 (28%), Gaps = 47/173 (27%)
Query: 174 IKALTRIFKVCDLDNDNLLSDKEL----NAFQRRCFDAPLSRDSLEDVKIVIRKNINDGV 229
++ R+F +D +S EL N R D ++ + ++ +D
Sbjct: 3 VRQFRRLFAQLA-GDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDT- 60
Query: 230 SANNCITLNGFLFLH-------NLFMQ--RGRSHTTWT-----VLRKFGYNEDLQISKEF 275
+ F +L ++ Q RS T + G++ +++
Sbjct: 61 --TGKLGFEEFKYLWNNIKKWQAIYKQFDVDRSGTIGSSELPGAFEAAGFH----LNEHL 114
Query: 276 LHPPLNIPATCTAELSDKGQQF--------------LTTLFYRFDKDGDGALS 314
SD+G + F DKDG G +
Sbjct: 115 YS-------MIIRRYSDEGGNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQ 160
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin
crosslinking, ionized calciu binding adapter molecule 2,
metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B
2vtg_A
Length = 150
Score = 31.7 bits (72), Expect = 0.34
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 168 ELTPECIKALTRIFKVCDLDNDNLLSDKEL 197
E PE + A + DL+N+ + L
Sbjct: 43 ENLPEKLTAFKEKYMEFDLNNEGEIDLMSL 72
Score = 29.4 bits (66), Expect = 1.8
Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 10/72 (13%)
Query: 289 ELSDKGQQFLTTLFYRFDKDGDGALSPEE-QARLFSL-CPPECPPWTDREMRAMVA---T 343
E + + FD + +G + + + L P T EM+ M++
Sbjct: 43 ENLPEKLTAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPK-----THLEMKKMISEVTG 97
Query: 344 NSKGWITMQGFL 355
I+ + F+
Sbjct: 98 GVSDTISYRDFV 109
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 32.0 bits (73), Expect = 0.34
Identities = 25/162 (15%), Positives = 49/162 (30%), Gaps = 12/162 (7%)
Query: 163 ISDKQELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIR 222
D LT + I R F + + + + + R
Sbjct: 8 YQDLTFLTKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILSLPELKANPFKERICR 67
Query: 223 KNINDGVSANNCITLNGFLFLHNLFMQRGRSHTTWTVLRK----FGYNEDLQISKEFLHP 278
+ A + ++ FL L ++F F +++D +++E L
Sbjct: 68 --VFSTSPAKDSLSFEDFLDLLSVFSDTATPDIK---SHYAFRIFDFDDDGTLNREDLSR 122
Query: 279 PLN--IPATCTAELSDKG-QQFLTTLFYRFDKDGDGALSPEE 317
+N LS +Q + + D D DG ++ E
Sbjct: 123 LVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSE 164
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 32.0 bits (73), Expect = 0.37
Identities = 27/192 (14%), Positives = 49/192 (25%), Gaps = 43/192 (22%)
Query: 148 YYAQKAVLHPMAPIYISDKQELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDA 207
+ +P + L F D + EL + A
Sbjct: 6 HPGAGGGYYPGGYGGAPGGPAFPGQTQDPLYGYFAA-VAGQDGQIDADELQRCLTQSGIA 64
Query: 208 PLSRD-SLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQ---------RGRSHTTW 257
+ +LE ++++ D + + N F L + RS T
Sbjct: 65 GGYKPFNLETCRLMVSMLDRDM---SGTMGFNEFKELWAVLNGWRQHFISFDTDRSGTVD 121
Query: 258 T-----VLRKFGYNEDLQISKEFLHPPLNIPATCTAELSDKGQ-------------QFLT 299
L G+ +S + ++ + S G+ + LT
Sbjct: 122 PQELQKALTTMGFR----LSPQAVN-------SIAKRYSTNGKITFDDYIACCVKLRALT 170
Query: 300 TLFYRFDKDGDG 311
F R D G
Sbjct: 171 DSFRRRDTAQQG 182
Score = 29.7 bits (67), Expect = 1.7
Identities = 15/87 (17%), Positives = 24/87 (27%), Gaps = 6/87 (6%)
Query: 277 HPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEE-----QARLFSLCPPECPP 331
+P A + Q L F DG + +E +
Sbjct: 14 YPGGYGGAPGGPAFPGQTQDPLYGYFAA-VAGQDGQIDADELQRCLTQSGIAGGYKPFNL 72
Query: 332 WTDREMRAMVATNSKGWITMQGFLCYW 358
T R M +M+ + G + F W
Sbjct: 73 ETCRLMVSMLDRDMSGTMGFNEFKELW 99
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 30.2 bits (69), Expect = 0.38
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 289 ELSDKGQQFLTTLFYRFDKDGDGALSPEE 317
LS++ L LF D D G ++ +E
Sbjct: 16 RLSEEEIGGLKELFKMIDTDNSGTITFDE 44
Score = 28.6 bits (65), Expect = 1.3
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 166 KQELTPECIKALTRIFKVCDLDNDNLLSDKEL 197
+ L+ E I L +FK+ D DN ++ EL
Sbjct: 14 AERLSEEEIGGLKELFKMIDTDNSGTITFDEL 45
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 32.0 bits (73), Expect = 0.38
Identities = 24/147 (16%), Positives = 53/147 (36%), Gaps = 23/147 (15%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDY---- 64
I++ G ++ GKTSL+ L ++ V S+ + +VD+
Sbjct: 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA----ADYDGSGVTLVDFPGHV 66
Query: 65 ---SEVDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDT------C 115
++ + + ++ L++ +VD + + FL + L T
Sbjct: 67 KLRYKLSDYLKTRAKFVK-----GLIF-MVDSTVDPKKLTTTAEFLVDILSITESSCENG 120
Query: 116 LPIVLVGNKVDLVDYSTVESSAKTLKN 142
+ I++ NK +L L++
Sbjct: 121 IDILIACNKSELFTARPPSKIKDALES 147
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 32.6 bits (73), Expect = 0.42
Identities = 34/209 (16%), Positives = 71/209 (33%), Gaps = 29/209 (13%)
Query: 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEV 67
+ R+L+LGD GK++ + +L+ E L+PS T V T + E
Sbjct: 67 QGVFRLLVLGDMKRGKSTFLNALIGE---NLLPSDVNPCT--------AVLTVLRYGPEK 115
Query: 68 DQTV---DELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNK 124
T+ D + + Y++ + F P+ L+
Sbjct: 116 KVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAKKLEQEKKQAFPDVDYAVVEYPLTLLQKG 175
Query: 125 VDLVDYSTV-------ESSAKTLKNISEMFYYAQKAVLHPMAPIYISDKQELTPECIKAL 177
+++VD + E S + N + + V+ P + +++ L
Sbjct: 176 IEIVDSPGLNDTEARNELSLGYVNNCHAILF-----VMRASQPCTLGERRYLENYIKGRG 230
Query: 178 TRIFKVC---DLDNDNLLSDKELNAFQRR 203
+F + D ++L+ ++ Q
Sbjct: 231 LTVFFLVNAWDQVRESLIDPDDVEELQAS 259
Score = 28.8 bits (63), Expect = 5.7
Identities = 22/150 (14%), Positives = 45/150 (30%), Gaps = 16/150 (10%)
Query: 61 IVDYSEVDQTV--DELTEE-IQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLP 117
IVD ++ T +EL+ + H I V ++ +L N + L
Sbjct: 178 IVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERR-----YLENYIKGRGLT 232
Query: 118 IVLVGNKVDLVDYSTVESSAKTLKNISEMFYYAQKAVLHPMAPIYISDKQELTPECIKAL 177
+ + N D V S ++ + ++ +A + Q + E
Sbjct: 233 VFFLVNAWDQVRES--LIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDE----- 285
Query: 178 TRIFKVCDLDNDNLLSDKELNAFQRRCFDA 207
R+F++ + F
Sbjct: 286 -RVFELSSIQALRRRLKNPQADLDGTGFPK 314
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 31.7 bits (72), Expect = 0.42
Identities = 21/161 (13%), Positives = 54/161 (33%), Gaps = 14/161 (8%)
Query: 163 ISDKQELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIR 222
+ + T ++ L R FK + +++++ + F D+ +
Sbjct: 9 LEAQTNFTKRELQVLYRGFK--NEXPSGVVNEETFKQIYAQFFP---HGDASTYAHYLFN 63
Query: 223 KNINDGVSANNCITLNGFLFLHNLFMQRGRSHTTWTVLRKFGYNEDLQISKEFLHPPLN- 281
+ F+ ++ ++ + N+D I+KE + +
Sbjct: 64 AFDTTQ---TGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKA 120
Query: 282 ----IPATCTAELSDKG-QQFLTTLFYRFDKDGDGALSPEE 317
+ L + +Q + F + DK+ DG ++ +E
Sbjct: 121 IYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDE 161
Score = 27.9 bits (62), Expect = 7.9
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 296 QFLTTLFYRFDKDGDGALSPEEQARLFSLC 325
+ LF FD G++ E+ S+
Sbjct: 56 TYAHYLFNAFDTTQTGSVKFEDFVTALSIL 85
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 31.6 bits (71), Expect = 0.46
Identities = 15/87 (17%), Positives = 33/87 (37%), Gaps = 2/87 (2%)
Query: 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTP--EMVPTHIVDYS 65
+ + IL+ G GKTS+ + +E + + T + THI++
Sbjct: 8 PKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHIIEEK 67
Query: 66 EVDQTVDELTEEIQKAHVICLVYSVVD 92
+ D+ +D + + + Y +
Sbjct: 68 DEDRLLDFMEPIMVSRGNHVVDYHSSE 94
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 31.0 bits (71), Expect = 0.52
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 6/56 (10%)
Query: 301 LFYRFDKDGDGALSPEEQARLFSLCP-PECPPWTDREMRAMVATNSKGWITMQGFL 355
F + D D G+LS EE L L P + + + T+ G + + F+
Sbjct: 11 RFKKLDLDNSGSLSVEEFMSLPELQQNPLV-----QRVIDIFDTDGNGEVDFKEFI 61
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 30.2 bits (69), Expect = 0.59
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 302 FYRFDKDGDGALSPEEQARLFSLCPPECPPWTDREMRAMVA 342
FY D+D G + +E P TD E +A +A
Sbjct: 47 FYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLA 87
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Length = 81
Score = 29.4 bits (67), Expect = 0.62
Identities = 10/48 (20%), Positives = 23/48 (47%)
Query: 169 LTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLED 216
+ + + + R FKV D + D ++ E ++ + PL+ +E+
Sbjct: 2 VRQDDEEEILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEE 49
Score = 27.5 bits (62), Expect = 3.4
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 302 FYRFDKDGDGALSPEEQARLFSLCPPECPPWTDREMRAMVA 342
F FD +GDG + +E + E P TD E+ +
Sbjct: 14 FKVFDANGDGVIDFDEFKFIMQKVGEE--PLTDAEVEEAMK 52
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 30.8 bits (70), Expect = 0.63
Identities = 27/153 (17%), Positives = 41/153 (26%), Gaps = 42/153 (27%)
Query: 187 DNDNLLSDKEL-NAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHN 245
D + +EL + + S SLE +I+I D + N F L
Sbjct: 11 GQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDH---TGKMGFNAFKELWA 67
Query: 246 LFMQ---------RGRSHTTWT-----VLRKFGYNEDLQISKEFLHPPLNIPATCTAELS 291
+ S T + GY +S + L T S
Sbjct: 68 ALNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYR----LSPQTLT-------TIVKRYS 116
Query: 292 DKGQ-------------QFLTTLFYRFDKDGDG 311
G+ + LT F + D G
Sbjct: 117 KNGRIFFDDYVACCVKLRALTDFFRKRDHLQQG 149
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus
abyssi}
Length = 350
Score = 31.6 bits (71), Expect = 0.66
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 378 YPITDRENQTSGVLVTREKQVDLLKKQTTRNVYVCHVIGNRSTGKTALCQSILRKH 433
P T RE+ + RE++ L++ ++G R GK++L ++ L +
Sbjct: 6 RPKTRRED-----IFDREEESRKLEESLENYPLTL-LLGIRRVGKSSLLRAFLNER 55
Score = 31.2 bits (70), Expect = 0.89
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 6 SLRRNVRILLLGDRHVGKTSLILSLVSE 33
SL LLLG R VGK+SL+ + ++E
Sbjct: 27 SLENYPLTLLLGIRRVGKSSLLRAFLNE 54
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 30.6 bits (70), Expect = 0.77
Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 12/73 (16%)
Query: 289 ELSDKGQQFLTTLFYRFDKDGDGALSPEE--QA-RLFSLCPPECPPWTDREMRAMVA--- 342
LS++ L +F D D G ++ EE + + E+ ++
Sbjct: 20 SLSEEEIAGLKEMFNMIDADKSGQITFEELKAGLKRVGANL------KESEILDLMQAAD 73
Query: 343 TNSKGWITMQGFL 355
++ G I + F+
Sbjct: 74 VDNSGTIDYKEFI 86
Score = 30.2 bits (69), Expect = 1.0
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 7/47 (14%)
Query: 151 QKAVLHPMAPIYISDKQELTPECIKALTRIFKVCDLDNDNLLSDKEL 197
+K L +A + L+ E I L +F + D D ++ +EL
Sbjct: 10 KKMALRVIA-------ESLSEEEIAGLKEMFNMIDADKSGQITFEEL 49
Score = 27.5 bits (62), Expect = 8.9
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 302 FYRFDKDGDGALSPEE 317
F FDKDG G ++P+E
Sbjct: 105 FTYFDKDGSGYITPDE 120
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase,
ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET:
ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Length = 773
Score = 31.9 bits (73), Expect = 0.78
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 311 GALSPEEQARLFSLCPPECPPWTDREMRAMVATN 344
G+L P +Q R+F P R + +++TN
Sbjct: 346 GSLPPHQQQRIFEPAPESHNGRPGR--KVVISTN 377
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control factor;
HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11
c.37.1.20
Length = 389
Score = 31.7 bits (71), Expect = 0.79
Identities = 11/58 (18%), Positives = 18/58 (31%), Gaps = 13/58 (22%)
Query: 391 LVTREKQVDLLKK----------QTTRNVYVCHVIGNRSTGKTALCQSILRKHHDSSK 438
L RE+Q+ L + G TGKT + + + D +
Sbjct: 19 LPHREQQLQQLDILLGNWLRNPGHHYPRATLL---GRPGTGKTVTLRKLWELYKDKTT 73
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 30.7 bits (70), Expect = 0.81
Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 12/73 (16%)
Query: 289 ELSDKGQQFLTTLFYRFDKDGDGALSPEEQA---RLFSLCPPECPPWTDREMRAMVA--- 342
LS++ L LF D D G ++ +E + + E++ ++
Sbjct: 3 RLSEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSEL------MESEIKDLMDAAD 56
Query: 343 TNSKGWITMQGFL 355
+ G I F+
Sbjct: 57 IDKSGTIDYGEFI 69
Score = 29.5 bits (67), Expect = 2.4
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 167 QELTPECIKALTRIFKVCDLDNDNLLSDKEL 197
+ L+ E I L +FK+ D DN ++ EL
Sbjct: 2 ERLSEEEIGGLKELFKMIDTDNSGTITFDEL 32
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 30.2 bits (69), Expect = 0.95
Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 12/60 (20%)
Query: 302 FYRFDKDGDGALSPEEQA---RLFSLCPPECPPWTDREMRAMVA---TNSKGWITMQGFL 355
F FDKD DG ++ + R P T+ E+ + N G + F+
Sbjct: 17 FREFDKDKDGYINCRDLGNCMRTMGYMP------TEMELIELSQQINMNLGGHVDFDDFV 70
Score = 28.7 bits (65), Expect = 2.9
Identities = 30/163 (18%), Positives = 57/163 (34%), Gaps = 31/163 (19%)
Query: 167 QELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSL------EDVKIV 220
+ L PE I+ L F+ D D D ++ ++L R ++ ++ +
Sbjct: 3 RSLRPEEIEELREAFREFDKDKDGYINCRDLGNCMR----------TMGYMPTEMELIEL 52
Query: 221 IRKNINDGVSANNCITLNGFLFLHNLFMQRGRSHTTWTV-LRK----FGYNEDLQISKEF 275
++ + + + F+ L + + LR F N D +IS
Sbjct: 53 SQQINMNL---GGHVDFDDFVELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSE 109
Query: 276 LHPPLNIPATCTAELSDK-GQQFLTTLFYRFDKDGDGALSPEE 317
L A L + G + + + D +GDG + EE
Sbjct: 110 LR------EAMRALLGHQVGHRDIEEIIRDVDLNGDGRVDFEE 146
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 31.2 bits (70), Expect = 1.00
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 11/50 (22%)
Query: 391 LVTREKQVDLLKK--------QTTRNVYVCHVIGNRSTGKTALCQSILRK 432
L RE Q+ + + N+++ G TGKTA+ + +L K
Sbjct: 22 LPHREDQIRKIASILAPLYREEKPNNIFIY---GLTGTGKTAVVKFVLSK 68
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle,
myosin subfragment 2, heavy meromyosin, essential light
chain; 20.00A {Avicularia avicularia}
Length = 196
Score = 30.4 bits (69), Expect = 1.0
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 10/57 (17%)
Query: 302 FYRFDKDGDGALSPEEQARLF-SL--CPPECPPWTDREMRAMVATNSKGWITMQGFL 355
F D+D DG +S + F SL T++E+ +MVA + G I FL
Sbjct: 63 FQLIDQDKDGFISKNDIRATFDSLGRLC------TEQELDSMVA-EAPGPINFTMFL 112
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 30.0 bits (68), Expect = 1.1
Identities = 6/40 (15%), Positives = 12/40 (30%), Gaps = 2/40 (5%)
Query: 302 FYRFDKDGDGALSPEEQARLFSLCPPECPPWTDREMRAMV 341
F ++ E R + E + + + MV
Sbjct: 46 FSLLADPERHLITAESLRRNSGILGIE--GMSKEDAQGMV 83
>2kld_A Polycystin-2; PC2, PKD2, calcium binding domain, EF hand,
cytosolic, calcium, coiled coil, disease mutation,
glycoprotein, ION transport; NMR {Homo sapiens} PDB:
2kle_A 2kq6_A 2y4q_A
Length = 123
Score = 29.6 bits (66), Expect = 1.2
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 298 LTTLFYRFDKDGDGALSPEEQARL 321
+ +F ++D+DGD L+ E ++
Sbjct: 82 IEAIFTKYDQDGDQELTEHEHQQM 105
>2k60_A Protein (stromal interaction molecule 1); EF-hand, SAM domain,
EF-SAM, STIM1, store operated calcium entry regulator,
SOCE; NMR {Homo sapiens}
Length = 150
Score = 30.0 bits (67), Expect = 1.2
Identities = 19/113 (16%), Positives = 42/113 (37%), Gaps = 10/113 (8%)
Query: 283 PATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPECPPWTDREMRAMVA 342
++E + + + D D +G + EE E + D ++
Sbjct: 2 SHMASSEDEKLSFEAVRNIHKLMDDDANGDVDVEESDEFLR----EDLNYHDPTVKHSTF 57
Query: 343 TNSKGWITMQGFLCYWILTTLFN--VNKTLEYLAYFG----YPITDRENQTSG 389
I+++ W + ++N V++ +++L + Y T R+ Q SG
Sbjct: 58 HGEDKLISVEDLWKAWKSSEVYNWTVDEVVQWLITYVELPQYEETFRKLQLSG 110
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 31.0 bits (71), Expect = 1.2
Identities = 43/178 (24%), Positives = 73/178 (41%), Gaps = 62/178 (34%)
Query: 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKA--------------EEITIPPDV 52
L R +R++++G +VGK++L+ L++E+ +A EEI I
Sbjct: 240 LNRGLRMVIVGKPNVGKSTLLNRLLNED-------RAIVTDIPGTTRDVISEEIVI---- 288
Query: 53 TPEMVPTHIVD----YSEVDQTVDEL-----TEEIQKAHVICLVYSVVDDAS--IDRLSS 101
+ IVD SE + V+ L +EI+KA ++ V DAS +D
Sbjct: 289 --RGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVL----DASSPLDEEDR 342
Query: 102 HWLPFLRNCLVDTCLPIVLVGNKVDLV--------------DYSTVESSAKTLKNISE 145
L ++N ++V NKVD+V D V+ SA + + +
Sbjct: 343 KILERIKN------KRYLVVINKVDVVEKINEEEIKNKLGTDRHMVKISALKGEGLEK 394
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 29.7 bits (68), Expect = 1.3
Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 12/60 (20%)
Query: 302 FYRFDKDGDGALSPEEQARLF-SL--CPPECPPWTDREMRAMVA---TNSKGWITMQGFL 355
F FD DG G + +E +L P E++ M++ G + FL
Sbjct: 12 FDLFDADGTGTIDVKELKVAMRALGFEP------KKEEIKKMISEIDKEGTGKMNFGDFL 65
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium,
RAS signal transduction, endocytosis/exocytosis complex;
NMR {Mus musculus} SCOP: a.39.1.6
Length = 92
Score = 28.9 bits (65), Expect = 1.4
Identities = 10/65 (15%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Query: 290 LSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPECPPWTDREMRAMVATNSKGWI 349
++D+ +Q+ F D +G + F+ + P + + + G +
Sbjct: 3 ITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKS--KLPILELSHIWELSDFDKDGAL 60
Query: 350 TMQGF 354
T+ F
Sbjct: 61 TLDEF 65
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 29.1 bits (66), Expect = 1.4
Identities = 10/41 (24%), Positives = 15/41 (36%)
Query: 302 FYRFDKDGDGALSPEEQARLFSLCPPECPPWTDREMRAMVA 342
F D D G + EE + + TD E +A +
Sbjct: 48 FKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLK 88
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata}
SCOP: a.39.1.4
Length = 109
Score = 29.1 bits (66), Expect = 1.4
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 302 FYRFDKDGDGALSPEEQARLFSLCPPECPPWTDREMRAMVA 342
F DKD G + EE + D E +A++A
Sbjct: 47 FEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLA 87
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator,
complex, LXXLL motif, transcriptional regulation; 2.2A
{Mus musculus} SCOP: d.110.3.8
Length = 132
Score = 29.5 bits (66), Expect = 1.5
Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 12/75 (16%)
Query: 274 EFLHP---PLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPECP 330
F P + E+ +G ++ YRF + LS + +L P
Sbjct: 45 AFFQPQGREPSYARQLFQEVMTRGT--ASSPSYRFILNDGTMLSAHTRCKLC------YP 96
Query: 331 PWTDREMRAMVATNS 345
D ++ +
Sbjct: 97 QSPD-MQPFIMGIHI 110
>1nub_A Basement membrane protein BM-40; extracellular module,
glycoprotein, anti-adhesive protein, C binding,
site-directed mutagenesis; HET: NAG; 2.80A {Homo
sapiens} SCOP: a.39.1.3 g.3.11.3 g.68.1.1 PDB: 2v53_A*
1bmo_A*
Length = 229
Score = 30.3 bits (67), Expect = 1.5
Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 18/61 (29%)
Query: 165 DKQELTP---------ECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLE 215
EL P C F+ CDLDND ++ E CF + + ++
Sbjct: 174 SHTELAPLRAPLIPMEHCTTRF---FETCDLDNDKYIALDEWA----GCFG--IKQKDID 224
Query: 216 D 216
Sbjct: 225 K 225
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 29.4 bits (67), Expect = 1.5
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 10/57 (17%)
Query: 302 FYRFDKDGDGALSPEEQARLF-SL--CPPECPPWTDREMRAMVATNSKGWITMQGFL 355
F D++ DG + E+ + S+ P TD + M++ + G I FL
Sbjct: 13 FNMIDQNRDGFIDKEDLHDMLASMGKNP------TDEYLEGMMS-EAPGPINFTMFL 62
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 29.6 bits (66), Expect = 1.5
Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 10/74 (13%)
Query: 273 KEFLHPPLNIPATCTAELSDKGQQFLTTLFYRFDKDGDGALSPEE-----QARLFSLCPP 327
E L +N P AE+S Q+ F D DG+ L E
Sbjct: 50 MEHLEGVINKP---EAEMSP--QELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSE 104
Query: 328 ECPPWTDREMRAMV 341
+ P ++ E+ ++
Sbjct: 105 QAPLMSEDELINII 118
Score = 27.2 bits (60), Expect = 8.8
Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 12/71 (16%)
Query: 168 ELTPECIKALTRIFKVCDLDNDNLLSDKEL----NAFQRRCFDAPLSRDSLEDVKIVIRK 223
E++P+ + FK+ D D +NLL EL + S +++ +I
Sbjct: 63 EMSPQ--ELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDG 120
Query: 224 NI------NDG 228
+ NDG
Sbjct: 121 VLRDDDKNNDG 131
>2joj_A Centrin protein; N-terminal domain, centrin solution structure,
EF-hand calcium binding protein, cell cycle; NMR
{Euplotes octocarinatus}
Length = 77
Score = 28.2 bits (64), Expect = 1.6
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 302 FYRFDKDGDGALSPEE 317
F FD + G++ E
Sbjct: 13 FDLFDTNKTGSIDYHE 28
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR
complex, HMR, HML, TELO AAA+ domain, structural,
nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Length = 318
Score = 30.3 bits (67), Expect = 1.8
Identities = 7/58 (12%), Positives = 17/58 (29%), Gaps = 11/58 (18%)
Query: 383 RENQTSGVLVTREKQV--------DLLKKQTTRNVYVCHVIGNRSTGKTALCQSILRK 432
Q +L ++ + D L + Y+ + K L ++ +
Sbjct: 14 ESLQKRELLKSQVEDFTRIFLPIYDSLMSSQNKLFYIT---NADDSTKFQLVNDVMDE 68
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 30.5 bits (68), Expect = 1.9
Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 11/50 (22%)
Query: 391 LVTREKQVD--------LLKKQTTRNVYVCHVIGNRSTGKTALCQSILRK 432
+ RE + +K + + G TGKT + + I +
Sbjct: 22 IPFREDILRDAAIAIRYFVKNEVKFSNLFL---GLTGTGKTFVSKYIFNE 68
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 29.5 bits (67), Expect = 2.1
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 10/59 (16%)
Query: 302 FYRFDKDGDGALSPEEQARLF-SL-CPPECPPWTDREMRAMVA---TNSKGWITMQGFL 355
F FD DG G + +E +L P E++ M++ + G I + FL
Sbjct: 34 FDLFDTDGSGTIDAKELKVAMRALGFEP-----KKEEIKKMISEIDKDGSGTIDFEEFL 87
Score = 29.5 bits (67), Expect = 2.2
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 166 KQELTPECIKALTRIFKVCDLDNDNLLSDKEL 197
+ LT E + + F + D D + KEL
Sbjct: 19 RVGLTEEQKQEIREAFDLFDTDGSGTIDAKEL 50
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 28.1 bits (63), Expect = 2.1
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Query: 290 LSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPECPPWTDREMRAMVATNSKGWI 349
+S + +F + DKD DG +S E +F P + ++ T G +
Sbjct: 4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKT--GLPSTLLAHIWSLCDTKDCGKL 61
Query: 350 TMQGF 354
+ F
Sbjct: 62 SKDQF 66
Score = 27.0 bits (60), Expect = 6.0
Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 3/49 (6%)
Query: 169 LTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDV 217
++P IF D D D +S E+ + L L +
Sbjct: 4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLK---TGLPSTLLAHI 49
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand
calcium-binding protein; 1.75A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A
1npq_A 1trf_A
Length = 90
Score = 28.0 bits (63), Expect = 2.2
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 289 ELSDKGQQFLTTLFYRFDKDGDGALSPEE 317
LS++ F FD DG G +S +E
Sbjct: 13 FLSEEMIAEFKAAFDMFDADGGGDISTKE 41
Score = 27.6 bits (62), Expect = 3.0
Identities = 11/40 (27%), Positives = 15/40 (37%)
Query: 158 MAPIYISDKQELTPECIKALTRIFKVCDLDNDNLLSDKEL 197
M + L+ E I F + D D +S KEL
Sbjct: 3 MTDQQAEARAFLSEEMIAEFKAAFDMFDADGGGDISTKEL 42
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 29.1 bits (66), Expect = 2.3
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 9/57 (15%)
Query: 302 FYRFDKDGDGALSPEEQARLF-SL--CPPECPPWTDREMRAMVATNSKGWITMQGFL 355
F D++ DG + ++ F ++ + E+ AM+ S G I FL
Sbjct: 31 FTVIDQNADGIIDKDDLRETFAAMGRLNV-----KNEELDAMIKEAS-GPINFTVFL 81
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially
structured protein, CAM-like; NMR {Entamoeba
histolytica} PDB: 2lc5_A
Length = 85
Score = 28.0 bits (63), Expect = 2.3
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 12/60 (20%)
Query: 302 FYRFDKDGDGALSPEEQA---RLFSLCPPECPPWTDREMRAMVA---TNSKGWITMQGFL 355
F FDKD D L+ EE R P T +++ +V ++ G + FL
Sbjct: 20 FQLFDKDNDNKLTAEELGTVMRALGANP------TKQKISEIVKDYDKDNSGKFDQETFL 73
Score = 27.2 bits (61), Expect = 4.0
Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 13/86 (15%)
Query: 166 KQELTPECIKALTRIFKVCDLDNDNLLSDKEL-NAFQRRCFDAPLSRDSLEDVKIVIRKN 224
K+ LT E + F++ D DNDN L+ +EL R A ++ + + +++
Sbjct: 5 KKVLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVM--RALGANPTK---QKISEIVKDY 59
Query: 225 INDGVSANNCITLNGFLFLHNLFMQR 250
D + FL + M
Sbjct: 60 DKDN---SGKFDQETFLTI----MLE 78
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 29.1 bits (66), Expect = 2.3
Identities = 11/60 (18%), Positives = 19/60 (31%), Gaps = 12/60 (20%)
Query: 302 FYRFDKDGDGALSPEEQARLF-SL--CPPECPPWTDREMRAMVA---TNSKGWITMQGFL 355
F FD + DG L E +L RE+ ++ + + + F
Sbjct: 29 FSLFDMNNDGFLDYHELKVAMKALGFEL------PKREILDLIDEYDSEGRHLMKYDDFY 82
Score = 28.7 bits (65), Expect = 3.5
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 166 KQELTPECIKALTRIFKVCDLDNDNLLSDKEL 197
EL E + + F + D++ND L EL
Sbjct: 14 NSELLEEQKQEIYEAFSLFDMNNDGFLDYHEL 45
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 29.9 bits (67), Expect = 2.4
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 13/90 (14%)
Query: 273 KEFLHPPLNIPATCTAE-LSDKGQQFLTTLFYRFDKDGDGALSPEEQA---RLFSLCPPE 328
KE + + T + L+++ F FDKDGDG ++ +E R P
Sbjct: 288 KEDGNILGHKLEYNTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNP-- 345
Query: 329 CPPWTDREMRAMVA---TNSKGWITMQGFL 355
T+ E++ M+ + G I FL
Sbjct: 346 ----TEAELQDMINEVDADGNGTIDFPEFL 371
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 29.8 bits (68), Expect = 2.5
Identities = 13/86 (15%), Positives = 24/86 (27%), Gaps = 22/86 (25%)
Query: 76 EEIQKAHVICLVYSVVDDASIDRLS--SHWLPFLRNCLVDTCLPIVLVGNKVDLV----- 128
++ +A +I + D +RL + L+ + V NK+D
Sbjct: 308 MKMAEADLILYLL----DLGTERLDDELTEIRELKAAHPAA--KFLTVANKLDRAANADA 361
Query: 129 ---------DYSTVESSAKTLKNISE 145
+ SA I
Sbjct: 362 LIRAIADGTGTEVIGISALNGDGIDT 387
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y
1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y
3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y
2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Length = 156
Score = 29.0 bits (66), Expect = 2.7
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 8/56 (14%)
Query: 302 FYRFDKDGDGALSPEEQARLF-SL-CPPECPPWTDREMRAMVATNSKGWITMQGFL 355
F D D DG +S E+ + L P D+E+ AM+ G + FL
Sbjct: 24 FSMIDVDRDGFVSKEDIKAISEQLGRAP-----DDKELTAMLKEAP-GPLNFTMFL 73
>2epg_A Hypothetical protein TTHA1785; alpha-beta fold, structural
genomics, NPPSFA, national proje protein structural and
functional analyses; 2.10A {Thermus thermophilus}
Length = 487
Score = 30.0 bits (67), Expect = 2.9
Identities = 17/99 (17%), Positives = 34/99 (34%)
Query: 203 RCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLHNLFMQRGRSHTTWTVLRK 262
R + L+ + L + + + V + F + + W V R
Sbjct: 112 RLLASHLTLEDLLPRQKELADALYRLVPSGVGSERRDVRFSKRELKEILKEGAGWLVKRG 171
Query: 263 FGYNEDLQISKEFLHPPLNIPATCTAELSDKGQQFLTTL 301
+GY ED++ + P P + ++G + TL
Sbjct: 172 YGYPEDVRFIESQGRLPWANPDKVSERAFERGAPQIGTL 210
>1sra_A Sparc; extracellular matrix protein, calcium-binding protein; 2.00A
{Homo sapiens} SCOP: a.39.1.3
Length = 151
Score = 28.7 bits (63), Expect = 3.2
Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 18/61 (29%)
Query: 165 DKQELTP---------ECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLE 215
EL P C F+ CDLDND ++ E CF + + ++
Sbjct: 96 SHTELAPLRAPLIPMEHCTTRF---FETCDLDNDKYIALDEWA----GCF--GIKQKDID 146
Query: 216 D 216
Sbjct: 147 K 147
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 145
Score = 28.6 bits (65), Expect = 3.2
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 9/57 (15%)
Query: 302 FYRFDKDGDGALSPEEQARLF-SL--CPPECPPWTDREMRAMVATNSKGWITMQGFL 355
F FDKD DG +S EE SL P T+ E+ + + + F
Sbjct: 11 FQIFDKDNDGKVSIEELGSALRSLGKNP------TNAELNTIKGQLNAKEFDLATFK 61
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 29.4 bits (67), Expect = 3.6
Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 25/85 (29%)
Query: 76 EEIQKAHVICLVYSVVDDAS--IDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLV----- 128
+ A ++ L DA+ +++ P++LV NK+DLV
Sbjct: 299 QAANTADLVLLTI----DAATGWTTGDQEIYEQVKH------RPLILVMNKIDLVEKQLI 348
Query: 129 --------DYSTVESSAKTLKNISE 145
V ++A + I
Sbjct: 349 TSLEYPENITQIVHTAAAQKQGIDS 373
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET:
GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Length = 270
Score = 29.1 bits (65), Expect = 3.6
Identities = 18/99 (18%), Positives = 36/99 (36%), Gaps = 18/99 (18%)
Query: 3 MKVSLRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPS-----KAEEITIPPDVTPEMV 57
+K ++ IL++G VGK+S + S++ E + P + ++ +
Sbjct: 32 LKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSR----SRAGF 87
Query: 58 PTHIVD---YSEVDQTVDELTEEIQK------AHVICLV 87
+I+D E D I+ V+ V
Sbjct: 88 TLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYV 126
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 29.4 bits (65), Expect = 3.7
Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 10 NVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSE 66
++++G+ +GK++LI SL +L P + + V+ E
Sbjct: 18 EFTLMVVGESGLGKSTLINSLFLT---DLYPERVISGAAEKIERTVQIEASTVEIEE 71
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 29.0 bits (65), Expect = 3.8
Identities = 22/161 (13%), Positives = 50/161 (31%), Gaps = 15/161 (9%)
Query: 163 ISDKQELTPECIKALTRIFK--VCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIV 220
++ + I+AL +FK + +D L++ +E + ++ V
Sbjct: 36 LARDTVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFK-----TNKKESLFADRV 90
Query: 221 IRKNINDGVSANNCITLNGFLFLHNLFMQRG--RSHTTWTVLRKFGYNEDLQISKEFLHP 278
N + F ++F ++ + + + I ++ +
Sbjct: 91 FDLFDTKH---NGILGFEEFARALSVFHPNAPIDDKIHFS-FQLYDLKQQGFIERQEVKQ 146
Query: 279 PLN-IPATCTAELSDKG-QQFLTTLFYRFDKDGDGALSPEE 317
+ A L D + + F D DG + EE
Sbjct: 147 MVVATLAESGMNLKDTVIEDIIDKTFEEADTKHDGKIDKEE 187
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 28.5 bits (64), Expect = 3.8
Identities = 24/153 (15%), Positives = 38/153 (24%), Gaps = 42/153 (27%)
Query: 187 DNDNLLSDKEL-NAFQRRCFDAPLSRDSLEDVKIVIRKNINDGVSANNCITLNGFLFLH- 244
D + EL + +LE ++++ D + + N F L
Sbjct: 13 GQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDM---SGTMGFNEFKELWA 69
Query: 245 ------NLFMQ--RGRSHTTWT-----VLRKFGYNEDLQISKEFLHPPLNIPATCTAELS 291
F+ RS T L G+ + Q S
Sbjct: 70 VLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAK-----------RYS 118
Query: 292 DKGQ-------------QFLTTLFYRFDKDGDG 311
G+ + LT F R D G
Sbjct: 119 TSGKITFDDYIACCVKLRALTDSFRRRDSAQQG 151
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 28.2 bits (64), Expect = 3.9
Identities = 10/60 (16%), Positives = 14/60 (23%), Gaps = 12/60 (20%)
Query: 302 FYRFDKDGDGALSPEEQARLF-SL--CPPECPPWTDREMRAMVA---TNSKGWITMQGFL 355
F FD + G ++ E + M G I FL
Sbjct: 12 FELFDSERTGFITKEGLQTVLKQFGVRV------EPAAFNEMFNEADATGNGKIQFPEFL 65
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP
ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A*
1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A*
2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Length = 510
Score = 29.2 bits (66), Expect = 4.0
Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 414 VIGNRSTGKTALC-QSILRKHHDSSKTSITSPVEC 447
+IG+R TGKT++ +I+ + + T + C
Sbjct: 167 IIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYC 201
>2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein;
heterodimer, beta-alpha-barrels, oxidoreductase; HET:
B12; 1.90A {Carboxydothermus hydrogenoformans} PDB:
2ycl_B*
Length = 310
Score = 29.2 bits (65), Expect = 4.1
Identities = 22/161 (13%), Positives = 52/161 (32%), Gaps = 12/161 (7%)
Query: 43 AEEITIPPDVTPEMVPTHIVD-YSEVDQTVDELTEEIQK--AHVICLVYSVVDDASIDRL 99
A E+ D P P +V+ + +V ++ + A ++ L +R
Sbjct: 50 ALEVF---DTPPTDWPDILVEPFKDVINDPVAWAKKCVEYGADIVALRLVSAHPDGQNRS 106
Query: 100 SSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYSTVESSAKTLKNISEMFYYAQKAVLHPMA 159
+ + +P++++G V+ D + L + + A K P+
Sbjct: 107 GAELAEVCKAVADAIDVPLMIIGCGVEEKDAEIFPVIGEALSGRNCLLSSATKDNYKPIV 166
Query: 160 PIYISDKQELT------PECIKALTRIFKVCDLDNDNLLSD 194
+ + K L + +L + ++ D
Sbjct: 167 ATCMVHGHSVVASAPLDINLSKQLNIMIMEMNLAPNRIIMD 207
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 28.3 bits (64), Expect = 4.2
Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 13/61 (21%)
Query: 302 FYRFDKDGDGALSPEEQA---RLFSLCPPECPPWTDREMRAM----VATNSKGWITMQGF 354
F FDK G GA++ + R P T++ ++ + + +T+
Sbjct: 10 FTLFDKKGQGAIAKDSLGDYLRAIGYNP------TNQLVQDIINADSSLRDASSLTLDQI 63
Query: 355 L 355
Sbjct: 64 T 64
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR
{Schizosaccharomyces pombe} SCOP: a.39.1.5
Length = 140
Score = 28.2 bits (64), Expect = 4.2
Identities = 5/16 (31%), Positives = 7/16 (43%)
Query: 302 FYRFDKDGDGALSPEE 317
F FD+ G G +
Sbjct: 11 FSLFDRHGTGRIPKTS 26
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 27.2 bits (61), Expect = 4.3
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 302 FYRFDKDGDGALSPEEQAR-LFSLCPPECPPWTDREMRAMVA 342
F DKDG+G +S E + +L TD E+ M+
Sbjct: 35 FRVEDKDGNGYISAAELRHVMTNL----GEKLTDEEVDEMIR 72
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation;
HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB:
1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A*
1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T*
2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Length = 842
Score = 29.2 bits (65), Expect = 4.3
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 390 VLVTREKQVDLLKK-QTTRNVYVCHVIGNRSTGKTALCQSILRKHHDSSK 438
V T ++ L+ K RN+ VI + GK+ L S++++ S
Sbjct: 2 VAFTVDQMRSLMDKVTNVRNM---SVIAHVDHGKSTLTDSLVQRAGIISA 48
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion,
structural genomics, PSI, protein structur initiative,
structural genomics of pathogenic protozoa CONS SGPP;
1.70A {Plasmodium falciparum} PDB: 2auc_A
Length = 146
Score = 28.3 bits (64), Expect = 4.4
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 302 FYRFDKDGDGALSPEE 317
Y +K G +S +
Sbjct: 21 IYFNEKSSGGKISIDN 36
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 28.3 bits (64), Expect = 5.0
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVP 40
R +RIL+LG GKT+++ L E +P
Sbjct: 5 TREMRILILGLDGAGKTTILYRLQVGEVVTTIP 37
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding,
protein biosynthesis I aminoacyl-tRNA synthetase,
ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A
4ari_A* 4as1_A*
Length = 880
Score = 29.1 bits (66), Expect = 5.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 472 VRDEQLPVLLPVDVDCDK 489
D+QLPV+LP DV D
Sbjct: 465 TPDDQLPVILPEDVVMDG 482
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A
{Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A
Length = 147
Score = 27.8 bits (63), Expect = 5.8
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 302 FYRFDKDGDGALSPEE 317
F FDKD G++S E
Sbjct: 17 FALFDKDNSGSISASE 32
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 28.3 bits (64), Expect = 6.1
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 302 FYRFDKDGDGALSPEE 317
F FDKDGDG ++ +E
Sbjct: 17 FSLFDKDGDGTITTKE 32
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D*
2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A
1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 27.8 bits (63), Expect = 6.3
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 302 FYRFDKDGDGALSPEE 317
F FDKDGDG ++ +E
Sbjct: 16 FALFDKDGDGTITTKE 31
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 28.7 bits (64), Expect = 6.3
Identities = 14/83 (16%), Positives = 23/83 (27%), Gaps = 14/83 (16%)
Query: 13 ILLLGDRHVGKTSLILSLVS--------------EEFPELVPSKAEEITIPPDVTPEMVP 58
IL G GKT L+ V EE + A + +
Sbjct: 284 ILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNL 343
Query: 59 THIVDYSEVDQTVDELTEEIQKA 81
IV +++ + I+
Sbjct: 344 LKIVCAYPESAGLEDHLQIIKSE 366
>3lac_A Pyrrolidone-carboxylate peptidase; alpha beta class, three layer
sandwich, hydrolase, protease, thiol protease,
structural genomics; 2.00A {Bacillus anthracis}
Length = 215
Score = 28.3 bits (62), Expect = 6.5
Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 37 ELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICL 86
E+ S E+ + + VP + + + E EE+ +IC+
Sbjct: 22 EVAKSLHEKTIGEYKIISKQVP---TVFHKSISVLKEYIEELAPEFIICI 68
>3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism,
detoxification, magnesium, metal-binding, peroxisome;
HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P*
1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A*
1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A*
Length = 555
Score = 28.7 bits (64), Expect = 6.6
Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 3/59 (5%)
Query: 288 AELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLF--SLCPPECPPW-TDREMRAMVAT 343
AEL + +LF D+ E LF S P T+ E++ V
Sbjct: 395 AELEQNLSRTFKSLFRASDESVLSMHKVCEAGGLFVNSPEEPSLSRMVTEEEIQFYVQQ 453
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2
function project, S2F, unknown function; HET: ADP; 1.70A
{Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Length = 158
Score = 27.6 bits (62), Expect = 7.0
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 13/66 (19%)
Query: 400 LLKKQTTRNVYVCHVIGNRSTGKTALCQSILR--KHHDSSKTSITSP----VECDPPYTI 453
+L K T + ++ G+ GKT L + +L+ H ++ SP VE Y I
Sbjct: 24 ILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQG----NVKSPTYTLVE---EYNI 76
Query: 454 NTTTVY 459
+Y
Sbjct: 77 AGKMIY 82
>3smt_A Histone-lysine N-methyltransferase SETD3; histone
methyltransferase, histone modification, LYSI
translational modification, structural genomics; HET:
SAM; 2.04A {Homo sapiens}
Length = 497
Score = 28.7 bits (63), Expect = 7.0
Identities = 47/318 (14%), Positives = 92/318 (28%), Gaps = 34/318 (10%)
Query: 46 ITIPPD--VTPEMVPTHIVDYSEVDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHW 103
+ +P +T E ++ + + I A + + +S W
Sbjct: 120 LWVPRKLLMTVESAKNSVLGPLYSQDRILQAMGNIALAFHLLCERA--------SPNSFW 171
Query: 104 LPFLRNCLVDTCLPIVLVGNKVDLVDYSTVESSA-KTLKNISEMFYYAQKAVLHPMAPIY 162
P+++ + P+ ++V + + KN + + Y K +
Sbjct: 172 QPYIQTLPSEYDTPLYFEEDEVRYLQSTQAIHDVFSQYKNTARQYAYFYKVIQTHPHANK 231
Query: 163 ISDKQELTPECIK-----ALTRIFKVCDLDNDNL------LSDKELNAFQRRCFDAPLSR 211
+ K T E + +TR ++ D + L D + L
Sbjct: 232 LPLKDSFTYEDYRWAVSSVMTRQNQIPTEDGSRVTLALIPLWDMCNHTNGLITTGYNLED 291
Query: 212 DSLEDVKIVIRKNINDGVSANNC--ITLNGFLFLHNLFMQRGRSHTTWTVLRKFGYNEDL 269
D E V ++ G N +H+ F SH + ++ L
Sbjct: 292 DRCE---CVALQDFRAGEQIYIFYGTRSNAEFVIHSGFFFDNNSHDRVKIKLGVSKSDRL 348
Query: 270 QISKEFLHPPLNIPATCTAELSDKG-------QQFLTTLFYRFDKDGDGALSPEEQARLF 322
K + IP + L FL ++ + L R+F
Sbjct: 349 YAMKAEVLARAGIPTSSVFALHFTEPPISAQLLAFLRVFCMTEEELKEHLLGDSAIDRIF 408
Query: 323 SLCPPECPPWTDREMRAM 340
+L E P D E++
Sbjct: 409 TLGNSEFPVSWDNEVKLW 426
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 28.5 bits (64), Expect = 7.3
Identities = 28/162 (17%), Positives = 56/162 (34%), Gaps = 42/162 (25%)
Query: 13 ILLLGDRHVGKTSLILSLVSEEFPELVPSKA--------EEITIPPDV------TPEMVP 58
I++ G R+VGK+S + +LV + +V A + + + P TP +
Sbjct: 37 IVVAGRRNVGKSSFMNALVGQNV-SIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDD 95
Query: 59 THIVDYSEVDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPI 118
+ V++ +A LV D++ + + ++ P
Sbjct: 96 VGELGRLRVEKA----RRVFYRADCGILVT----DSAPTPYEDDVVNLFKE--MEI--PF 143
Query: 119 VLVGNKVDLVD---------------YSTVESSAKTLKNISE 145
V+V NK+D++ + SA K +
Sbjct: 144 VVVVNKIDVLGEKAEELKGLYESRYEAKVLLVSALQKKGFDD 185
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex
without magnesium, ARF family, RAS superfamily,
G-domain, signaling protein; HET: MES GDP; 1.70A {Mus
musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 27.9 bits (63), Expect = 7.6
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 3 MKVSLRRNVRILLLGDRHVGKTSLILSLVSEEFPELVP 40
+K + + VRILLLG + GKT+L+ L SE+ + P
Sbjct: 9 LKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITP 46
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 27.7 bits (61), Expect = 7.6
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 11 VRILLLGDRHVGKTSLILSLVSE 33
++I++ G+ VGKT+L+ +V
Sbjct: 1 MKIIITGEPGVGKTTLVKKIVER 23
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin
V, chicken, molecular motor, ATPase, ELC, IQ motif,
muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens}
SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B*
1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 27.6 bits (62), Expect = 7.7
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Query: 302 FYRFDKDGDGALSPEEQAR-LFSLCPPECPPWTDREMRAMV--ATNSKGWITMQGFL 355
F FDK+G+G + E L +L T+ E+ ++ +S G I + FL
Sbjct: 93 FRVFDKEGNGKVMGAELRHVLTTL----GEKMTEEEVETVLAGHEDSNGCINYEAFL 145
Score = 27.6 bits (62), Expect = 8.7
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 288 AELSDKGQQFLTTLFYRFDKDGDGALSPEE 317
E + + F FD+ GDG + +
Sbjct: 2 IEFNKDQLEEFKEAFELFDRVGDGKILYSQ 31
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell
junction, cell projection, coiled coil, endocytosis,
membrane, phosphoprotein; NMR {Homo sapiens}
Length = 111
Score = 27.0 bits (60), Expect = 7.7
Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 2/54 (3%)
Query: 301 LFYRFDKDGDGALSPEEQARLFSLCPPECPPWTDREMRAMVATNSKGWITMQGF 354
LF DK G L+ + + P + + + G +T + F
Sbjct: 19 LFNSHDKTMSGHLTGPQARTILMQS--SLPQAQLASIWNLSDIDQDGKLTAEEF 70
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding,
protein binding; HET: GDP; 3.17A {Saccharomyces
cerevisiae} SCOP: c.37.1.8
Length = 183
Score = 27.6 bits (62), Expect = 8.4
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVP 40
+ +RIL+LG GKT+++ L E P
Sbjct: 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKP 48
>1nul_A XPRT, xanthine-guanine phosphoribosyltransferase; purine salvage
enzym; 1.80A {Escherichia coli} SCOP: c.61.1.1 PDB:
1a96_A* 1a95_A 1a98_A 1a97_A*
Length = 152
Score = 27.3 bits (61), Expect = 8.6
Identities = 12/118 (10%), Positives = 31/118 (26%), Gaps = 22/118 (18%)
Query: 56 MVPTHIVDYSEVDQTVDELTEEIQK-----------------AHVICLVYSVVDDASIDR 98
M +IV + + +L + ++ + ++
Sbjct: 1 MSEKYIVTWDMLQIHARKLASRLMPSEQWKGIIAVSRGGLVPGALLARELGIRHVDTVC- 59
Query: 99 LSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYSTVESSAKTLKNISEMFYYAQKAVLH 156
S + + + G ++D + + T I EM+ A +
Sbjct: 60 -ISSYDHDNQR-ELKVLKRAEGDGEGFIVID--DLVDTGGTAVAIREMYPKAHFVTIF 113
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 27.6 bits (62), Expect = 8.7
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVP 40
R +R+L+LG + GKT+++ E+ + P
Sbjct: 16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISP 48
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase;
beta barrel, switch domain, heterodimer, pyrophosphate,
G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV}
SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Length = 434
Score = 28.0 bits (63), Expect = 9.0
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 118 IVLVGNKVDLVDYS 131
IV+ NK+DL +
Sbjct: 160 IVVAINKMDLNGFD 173
>2gri_A NSP3; SARS-COV, non-structural protein, structural genomics, PSI,
protein structure initiative, joint center for
structural genomics, JCSG; NMR {Sars coronavirus} SCOP:
d.15.14.1 PDB: 2idy_A
Length = 112
Score = 27.0 bits (59), Expect = 9.1
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
Query: 295 QQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPE 328
++ FY FD G+ S S PP+
Sbjct: 81 DEWSVATFYLFDDAGEENFSSR---MYCSFYPPD 111
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 27.5 bits (62), Expect = 9.3
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 11 VRILLLGDRHVGKTSLILSLVSEEFPELVP 40
+RIL++G GKT+++ L E +P
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIP 30
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 27.6 bits (62), Expect = 9.5
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVP 40
++ +RIL++G GKT+++ L E +P
Sbjct: 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIP 59
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 27.6 bits (62), Expect = 9.5
Identities = 6/33 (18%), Positives = 16/33 (48%)
Query: 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVP 40
+ +++++G + GKT+++ E P
Sbjct: 19 SQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSP 51
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 27.8 bits (61), Expect = 9.8
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 6 SLRR--NVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVD 63
L ++++G+ +GK++LI SL + I V E I +
Sbjct: 2 PLGSGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSH-RIKKTVQVEQSKVLIKE 60
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like,
squid, contractIle protein; 2.60A {Todarodes pacificus}
PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 27.1 bits (61), Expect = 9.8
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 10/57 (17%)
Query: 302 FYRFDKDGDGALSPEEQARLF-SL--CPPECPPWTDREMRAMVATNSKGWITMQGFL 355
F D+D DG + E+ +F SL P D E+ AM+ G + FL
Sbjct: 22 FTMIDQDRDGFIGMEDLKDMFSSLGRVP------PDDELNAMLKECP-GQLNFTAFL 71
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.416
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,286,121
Number of extensions: 555802
Number of successful extensions: 2358
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2118
Number of HSP's successfully gapped: 456
Length of query: 608
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 509
Effective length of database: 3,937,614
Effective search space: 2004245526
Effective search space used: 2004245526
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.8 bits)