BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3302
(123 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
Query: 8 YTICEVLVALGAVIGNSLVIVAFGREKRLRRRTNYYIXXXXXXXXXXXXXXIPCALLASV 67
Y E+ +A+ A++GN LV A L+ TNY++ IP A+ S
Sbjct: 9 YITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADILVGVLAIPFAITIST 68
Query: 68 GLPRHLYACLFTISLLVVLCTISIFCLVAVSVDRYWAILFPMGYARNVTTK-----IAVC 122
G + CLF ++VL SIF L+A+++DRY AI P+ Y VT IA+C
Sbjct: 69 GFCAACHGCLFIACFVLVLAQSSIFSLLAIAIDRYIAIAIPLRYNGLVTGTRAAGIIAIC 128
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 54/109 (49%)
Query: 8 YTICEVLVALGAVIGNSLVIVAFGREKRLRRRTNYYIXXXXXXXXXXXXXXIPCALLASV 67
Y E+ +A+ A++GN LV A L+ TNY++ IP A+ S
Sbjct: 34 YITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIST 93
Query: 68 GLPRHLYACLFTISLLVVLCTISIFCLVAVSVDRYWAILFPMGYARNVT 116
G + CLF ++VL SIF L+A+++DRY AI P+ Y VT
Sbjct: 94 GFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVT 142
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
Query: 8 YTICEVLVALGAVIGNSLVIVAFGREKRLRRRTNYYIXXXXXXXXXXXXXXIPCALLASV 67
Y E+ +A+ A++GN LV A L+ TNY++ IP A+ S
Sbjct: 9 YITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIST 68
Query: 68 GLPRHLYACLFTISLLVVLCTISIFCLVAVSVDRYWAILFPMGYARNVTTK-----IAVC 122
G + CLF ++VL SIF L+A+++DRY AI P+ Y VT IA+C
Sbjct: 69 GFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAIC 128
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
Query: 8 YTICEVLVALGAVIGNSLVIVAFGREKRLRRRTNYYIXXXXXXXXXXXXXXIPCALLASV 67
Y E+ +A+ A++GN LV A L+ TNY++ IP A+ S
Sbjct: 9 YITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIPFAIAIST 68
Query: 68 GLPRHLYACLFTISLLVVLCTISIFCLVAVSVDRYWAILFPMGYARNVTTK-----IAVC 122
G + CLF ++VL SIF L+A+++DRY AI P+ Y VT IA+C
Sbjct: 69 GFCAACHGCLFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAIC 128
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
Query: 8 YTICEVLVALGAVIGNSLVIVAFGREKRLRRRTNYYIXXXXXXXXXXXXXXIPCALLASV 67
Y E+ +A+ A++GN LV A L+ TNY++ IP A+ S
Sbjct: 24 YITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIST 83
Query: 68 GLPRHLYACLFTISLLVVLCTISIFCLVAVSVDRYWAILFPMGYARNVTTK-----IAVC 122
G + CLF ++VL SIF L+A+++DRY AI P+ Y VT IA+C
Sbjct: 84 GFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAIC 143
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 49.7 bits (117), Expect = 4e-07, Method: Composition-based stats.
Identities = 35/109 (32%), Positives = 50/109 (45%), Gaps = 2/109 (1%)
Query: 14 LVALGAVIGNSLVIVAFGREKRLRRRTNYYIXXXXXXXXXXXXXXIP--CALLASVGLPR 71
L+ L V GN LVI A + +RL+ TNY+I +P A + +
Sbjct: 191 LIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTF 250
Query: 72 HLYACLFTISLLVVLCTISIFCLVAVSVDRYWAILFPMGYARNVTTKIA 120
+ C F S+ V+ T SI L ++VDRY+AI P Y +T A
Sbjct: 251 GNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKA 299
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 50/109 (45%), Gaps = 2/109 (1%)
Query: 14 LVALGAVIGNSLVIVAFGREKRLRRRTNYYIXXXXXXXXXXXXXXIP--CALLASVGLPR 71
L+ L V GN LVI A + +RL+ TNY+I +P A + +
Sbjct: 14 LIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTF 73
Query: 72 HLYACLFTISLLVVLCTISIFCLVAVSVDRYWAILFPMGYARNVTTKIA 120
+ C F S+ V+ T SI L ++VDRY+AI P Y +T A
Sbjct: 74 GNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKA 122
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 50/111 (45%), Gaps = 6/111 (5%)
Query: 14 LVALGAVIGNSLVIVAFGREKRLRRRTNYYIXXXXXXXXXXXXXXIP----CALLASVGL 69
L+ L V GN LVI A + +RL+ TNY+I +P C L+
Sbjct: 18 LIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAACILMKMWTF 77
Query: 70 PRHLYACLFTISLLVVLCTISIFCLVAVSVDRYWAILFPMGYARNVTTKIA 120
+ C F S+ V+ T SI L ++VDRY+AI P Y +T A
Sbjct: 78 GN--FWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKA 126
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 4/110 (3%)
Query: 14 LVALGAVIGNSLVIVAFGREKRLRRRTNYYIXXXXXXXXXXXXXXIP---CALLASVGLP 70
L+ L V GN LVI A + +RL+ TNY+I +P +L +
Sbjct: 50 LIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTF 109
Query: 71 RHLYACLFTISLLVVLCTISIFCLVAVSVDRYWAILFPMGYARNVTTKIA 120
+ + C F S+ V+ T SI+ L ++VDRY+AI P Y +T A
Sbjct: 110 GNFW-CEFWTSIDVLCVTASIWTLCVIAVDRYFAITSPFKYQSLLTKNKA 158
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 17 LGAVIGNSLVIVAFGREKRLRRRTNYYIXXXXXXXXXXXXXXIPCALLASVGLPRHLYA- 75
L V GN LV +A +E+ L+ TNY + +P + V ++
Sbjct: 50 LAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSR 109
Query: 76 --CLFTISLLVVLCTISIFCLVAVSVDRYWAILFPMGYAR 113
C ++L V++CT SI+ L A+S+DRY A++ P+ Y
Sbjct: 110 ICCDVFVTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQH 149
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 51/110 (46%), Gaps = 4/110 (3%)
Query: 14 LVALGAVIGNSLVIVAFGREKRLRRRTNYYIXXXXXXXXXXXXXXIP---CALLASVGLP 70
L+ L V GN LVI A + +RL+ TNY+I +P +L +
Sbjct: 19 LIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTF 78
Query: 71 RHLYACLFTISLLVVLCTISIFCLVAVSVDRYWAILFPMGYARNVTTKIA 120
+ + C F S+ V+ T SI L ++VDRY+AI P Y +T A
Sbjct: 79 GNFW-CEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKA 127
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 51/110 (46%), Gaps = 4/110 (3%)
Query: 14 LVALGAVIGNSLVIVAFGREKRLRRRTNYYIXXXXXXXXXXXXXXIP---CALLASVGLP 70
L+ L V GN LVI A + +RL+ TNY+I +P +L +
Sbjct: 42 LIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTF 101
Query: 71 RHLYACLFTISLLVVLCTISIFCLVAVSVDRYWAILFPMGYARNVTTKIA 120
+ + C F S+ V+ T SI L ++VDRY+AI P Y +T A
Sbjct: 102 GNFW-CEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKA 150
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 51/110 (46%), Gaps = 4/110 (3%)
Query: 14 LVALGAVIGNSLVIVAFGREKRLRRRTNYYIXXXXXXXXXXXXXXIP---CALLASVGLP 70
L+ L V GN LVI A + +RL+ TNY+I +P +L +
Sbjct: 43 LIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTF 102
Query: 71 RHLYACLFTISLLVVLCTISIFCLVAVSVDRYWAILFPMGYARNVTTKIA 120
+ + C F S+ V+ T SI L ++VDRY+AI P Y +T A
Sbjct: 103 GNFW-CEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKA 151
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 51/110 (46%), Gaps = 4/110 (3%)
Query: 14 LVALGAVIGNSLVIVAFGREKRLRRRTNYYIXXXXXXXXXXXXXXIP---CALLASVGLP 70
L+ L V GN LVI A + +RL+ TNY+I +P +L +
Sbjct: 49 LIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTF 108
Query: 71 RHLYACLFTISLLVVLCTISIFCLVAVSVDRYWAILFPMGYARNVTTKIA 120
+ + C F S+ V+ T SI L ++VDRY+AI P Y +T A
Sbjct: 109 GNFW-CEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKA 157
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 51/110 (46%), Gaps = 4/110 (3%)
Query: 14 LVALGAVIGNSLVIVAFGREKRLRRRTNYYIXXXXXXXXXXXXXXIP---CALLASVGLP 70
L+ L V GN LVI A + +RL+ TNY+I +P +L +
Sbjct: 50 LIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTF 109
Query: 71 RHLYACLFTISLLVVLCTISIFCLVAVSVDRYWAILFPMGYARNVTTKIA 120
+ + C F S+ V+ T SI L ++VDRY+AI P Y +T A
Sbjct: 110 GNFW-CEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKA 158
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 54/121 (44%), Gaps = 26/121 (21%)
Query: 14 LVALGAVIGNSLVIVAFGREKRLRRRTNYYIXXXXXXXXXXXXXXIPCALLASVGLPRHL 73
+AL +IGN LVIVAF K+L+ NY++ + CA L + +L
Sbjct: 21 FLALVTIIGNILVIVAFKVNKQLKTVNNYFLLS------------LACADLIIGVISMNL 68
Query: 74 Y--------------ACLFTISLLVVLCTISIFCLVAVSVDRYWAILFPMGYARNVTTKI 119
+ AC +S+ V S+ L+ +S DRY++I P+ Y TTK
Sbjct: 69 FTTYIIMNRWALGNLACDLWLSIDYVASNASVMNLLVISFDRYFSITRPLTYRAKRTTKR 128
Query: 120 A 120
A
Sbjct: 129 A 129
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 49/114 (42%), Gaps = 5/114 (4%)
Query: 14 LVALGAVIGNSLVIVAFGREKRLRRRTNYYIXXXXXXXXXXXXXXIP--CALLASVGLPR 71
LV L V GN LVI A G +RL+ TN +I +P L+
Sbjct: 20 LVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLW 79
Query: 72 HLYACLFTISLLVVLCTISIFCLVAVSVDRYWAILFPMGYARNVT---TKIAVC 122
+ C SL V+ T SI L +++DRY AI P Y +T K+ +C
Sbjct: 80 GSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIIC 133
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 49/114 (42%), Gaps = 5/114 (4%)
Query: 14 LVALGAVIGNSLVIVAFGREKRLRRRTNYYIXXXXXXXXXXXXXXIP--CALLASVGLPR 71
LV L V GN LVI A G +RL+ TN +I +P L+
Sbjct: 20 LVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLW 79
Query: 72 HLYACLFTISLLVVLCTISIFCLVAVSVDRYWAILFPMGYARNVT---TKIAVC 122
+ C SL V+ T SI L +++DRY AI P Y +T K+ +C
Sbjct: 80 GSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIIC 133
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 9 TICEVLVALGAVIGNSLVIVAFGREKRLRRRTNYYIXXXXXXXXXXXXXXIPCALL---- 64
TIC V V L N LV+ A E++L N YI +P +L
Sbjct: 17 TICLVTVGL-----NLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLM 71
Query: 65 --ASVGLPRHLYACLFTISLLVVLCTISIFCLVAVSVDRYWAILFPMGYAR 113
S+G P CLF +S+ V T SIF + + +DRY ++ P+ Y +
Sbjct: 72 SKWSLGRP----LCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLK 118
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 10/128 (7%)
Query: 3 ALNVPYTICEVL--------VALGAVIGNSLVIVAFGREKRLRRRTNYYIXXXXXXXXXX 54
AL PY EV+ ++L +IGN LV+V+ + L+ NY++
Sbjct: 13 ALTSPYKTFEVVFIVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLII 72
Query: 55 XXXXIPCALLASV--GLPRHLYACLFTISLLVVLCTISIFCLVAVSVDRYWAILFPMGYA 112
+ L +V P C ++L V+ S+ L+ +S DRY+ + P+ Y
Sbjct: 73 GVFSMNLYTLYTVIGYWPLGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYP 132
Query: 113 RNVTTKIA 120
TTK+A
Sbjct: 133 VKRTTKMA 140
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
LIGAND For Nk1r
Length = 364
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 3/93 (3%)
Query: 33 EKRLRRRTNYYIXXXXXXXXXXXXXXIPCALLASVGLPRH--LYACLFTISLLVVLCTIS 90
KR+R TNY++ +V + L+ C F + S
Sbjct: 60 HKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFAS 119
Query: 91 IFCLVAVSVDRYWAILFPMGYARNVT-TKIAVC 122
I+ + AV+ DRY AI+ P+ + T TK+ +C
Sbjct: 120 IYSMTAVAFDRYMAIIHPLQPRLSATATKVVIC 152
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 14 LVALGAVIGNSLVIVAFGREKRLRRRTNYYIXXXXXXXXXXXXXXIPCALLASVGLPRHL 73
++ L ++GN LVI+ G +K+LR T+ Y +P + +V +
Sbjct: 57 IIFLTGIVGNGLVILVMGYQKKLRSMTDKY-RLHLSVADLLFVITLPFWAVDAVA---NW 112
Query: 74 YACLFTISLLVVLCTI----SIFCLVAVSVDRYWAILFPMGYAR 113
Y F + V+ T+ S++ L +S+DRY AI+ R
Sbjct: 113 YFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQR 156
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 14 LVALGAVIGNSLVIVAFGREKRLRRRTNYYIXXXXXXXXXXXXXXIPCALLASVGLPRHL 73
++ L ++GN LVI+ G +K+LR T+ Y +P + +V +
Sbjct: 57 IIFLTGIVGNGLVILVMGYQKKLRSMTDKY-RLHLSVADLLFVITLPFWAVDAVA---NW 112
Query: 74 YACLFTISLLVVLCTI----SIFCLVAVSVDRYWAILFPMGYAR 113
Y F + V+ T+ S++ L +S+DRY AI+ R
Sbjct: 113 YFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQR 156
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 29.6 bits (65), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 14 LVALGAVIGNSLVIVAFGREKRLRRRTNYYIXXXXXXXXXXXXXXIPCALLASVGLPRHL 73
++ L ++GN LVI+ G +K+LR T+ Y +P + +V +
Sbjct: 57 IIFLTGIVGNGLVILVMGYQKKLRSMTDKY-RLHLSVADLLFVITLPFWAVDAVA---NW 112
Query: 74 YACLFTISLLVVLCTI----SIFCLVAVSVDRYWAILFPMGYAR 113
Y F + V+ T+ S++ L +S+DRY AI+ R
Sbjct: 113 YFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQR 156
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 1/96 (1%)
Query: 15 VALGAVIGNSLVIVAFGREKRLRRRTNYYIXXXXXXXXXXXXXXIPCALLASVGL-PRHL 73
V +G ++GN LV+ R +++ TN YI +G P
Sbjct: 135 VCVGGLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLVLLTLPFQGTDILLGFWPFGN 194
Query: 74 YACLFTISLLVVLCTISIFCLVAVSVDRYWAILFPM 109
C I++ S F L A+SVDRY AI P+
Sbjct: 195 ALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPI 230
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 1/91 (1%)
Query: 19 AVIGNSLVIVAFGREKRLRRRTNYYIXXXXXXXXXXXXXX-IPCALLASVGLPRHLYACL 77
++GNSLV+ R +++ TN YI + P C
Sbjct: 36 GLVGNSLVMFVIIRYTKMKTATNIYIFNLALADALVTTTMPFQSTVYLMNSWPFGDVLCK 95
Query: 78 FTISLLVVLCTISIFCLVAVSVDRYWAILFP 108
+S+ SIF L +SVDRY A+ P
Sbjct: 96 IVLSIDYYNMFTSIFTLTMMSVDRYIAVCHP 126
>pdb|1HLL|A Chain A, Nmr Structure Of T3-I2, A 32 Residue Peptide From The
Alpha- 2a Adrenergic Receptor
Length = 32
Score = 25.8 bits (55), Expect = 7.1, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 88 TISIFCLVAVSVDRYWAILFPMGY 111
T SI L A+S+DRYW+I + Y
Sbjct: 1 TSSIVHLCAISLDRYWSITQAIEY 24
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 34/91 (37%), Gaps = 1/91 (1%)
Query: 19 AVIGNSLVIVAFGREKRLRRRTNYYIXXXXXXXXXXXXXX-IPCALLASVGLPRHLYACL 77
++GN LV+ R +L+ TN YI A P C
Sbjct: 28 GLLGNVLVMFGIVRYTKLKTATNIYIFNLALADALATSTLPFQSAKYLMETWPFGELLCK 87
Query: 78 FTISLLVVLCTISIFCLVAVSVDRYWAILFP 108
+S+ SIF L +SVDRY A+ P
Sbjct: 88 AVLSIDYYNMFTSIFTLTMMSVDRYIAVCHP 118
>pdb|3S5W|A Chain A, Ornithine Hydroxylase (Pvda) From Pseudomonas Aeruginosa
pdb|3S5W|B Chain B, Ornithine Hydroxylase (Pvda) From Pseudomonas Aeruginosa
pdb|3S61|A Chain A, Reduced Form Of Ornithine Hydroxylase (Pvda) From
Pseudomonas Aeruginosa
pdb|3S61|B Chain B, Reduced Form Of Ornithine Hydroxylase (Pvda) From
Pseudomonas Aeruginosa
Length = 463
Score = 25.4 bits (54), Expect = 9.3, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 68 GLPRHLYACLFTISLLVVLCTISIFCLV-----AVSVDRYWAILFPMGYARNV 115
G+PRH + C+ T+ L +SV+ Y A++ GY R +
Sbjct: 327 GIPRHAFRCMTTVERATATAQGIELALRDAGSGELSVETYDAVILATGYERQL 379
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.334 0.145 0.454
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,712,769
Number of Sequences: 62578
Number of extensions: 68960
Number of successful extensions: 221
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 173
Number of HSP's gapped (non-prelim): 33
length of query: 123
length of database: 14,973,337
effective HSP length: 85
effective length of query: 38
effective length of database: 9,654,207
effective search space: 366859866
effective search space used: 366859866
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 45 (21.9 bits)