Query psy3302
Match_columns 123
No_of_seqs 112 out of 1243
Neff 9.8
Searched_HMMs 46136
Date Fri Aug 16 21:33:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3302.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3302hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA03234 DNA packaging protein 99.9 1.5E-22 3.3E-27 143.0 8.2 109 5-113 32-142 (338)
2 KOG4219|consensus 99.9 1.2E-22 2.6E-27 142.6 6.7 107 6-112 36-144 (423)
3 PHA02834 chemokine receptor-li 99.8 5.2E-20 1.1E-24 129.4 10.8 108 5-114 28-136 (323)
4 PHA02638 CC chemokine receptor 99.8 1.3E-19 2.8E-24 131.2 11.1 114 4-119 97-211 (417)
5 PHA03087 G protein-coupled che 99.8 2.6E-19 5.7E-24 126.1 10.7 115 4-120 39-155 (335)
6 KOG4220|consensus 99.8 1E-20 2.2E-25 133.5 0.4 114 8-121 33-148 (503)
7 PF00001 7tm_1: 7 transmembran 99.8 7E-19 1.5E-23 117.8 7.2 99 22-120 1-101 (257)
8 PHA03235 DNA packaging protein 99.8 3.3E-18 7.1E-23 123.6 9.6 108 5-113 32-142 (409)
9 PF10320 7TM_GPCR_Srsx: Serpen 99.7 2.3E-17 5.1E-22 112.8 3.8 104 17-120 2-105 (257)
10 KOG2087|consensus 99.4 1.1E-12 2.4E-17 91.8 5.8 110 8-118 27-146 (363)
11 PF10328 7TM_GPCR_Srx: Serpent 99.2 1.7E-10 3.7E-15 79.6 8.2 107 15-121 3-112 (274)
12 PF10324 7TM_GPCR_Srw: Serpent 99.0 9.8E-09 2.1E-13 72.1 9.9 98 14-112 5-114 (318)
13 PF10316 7TM_GPCR_Srbc: Serpen 98.4 2.7E-06 5.8E-11 58.9 7.9 118 1-118 1-123 (273)
14 PF11710 Git3: G protein-coupl 98.2 4.3E-05 9.3E-10 50.7 9.6 74 35-108 31-106 (201)
15 PF05462 Dicty_CAR: Slime mold 98.1 2.1E-05 4.6E-10 55.2 8.1 100 7-108 8-107 (303)
16 PF10323 7TM_GPCR_Srv: Serpent 98.1 1.1E-05 2.4E-10 56.1 6.1 103 17-119 6-119 (283)
17 PF10321 7TM_GPCR_Srt: Serpent 97.9 0.00032 6.9E-09 49.6 10.0 118 3-120 30-150 (313)
18 PF05296 TAS2R: Mammalian tast 97.8 0.00038 8.3E-09 49.0 9.9 104 4-107 5-113 (303)
19 PF10292 7TM_GPCR_Srab: Serpen 97.4 0.0063 1.4E-07 43.2 11.2 105 10-114 21-134 (324)
20 PF10317 7TM_GPCR_Srd: Serpent 97.3 0.0031 6.8E-08 44.0 8.4 101 10-110 3-116 (292)
21 PF02118 Srg: Srg family chemo 97.2 0.0062 1.3E-07 41.9 9.4 107 13-119 5-124 (275)
22 PF03402 V1R: Vomeronasal orga 97.1 0.0006 1.3E-08 47.1 3.5 70 35-106 6-76 (265)
23 PF00002 7tm_2: 7 transmembran 96.0 0.0041 8.9E-08 42.0 1.8 99 10-108 5-104 (242)
24 PF02117 7TM_GPCR_Sra: Serpent 95.1 0.4 8.6E-06 34.3 9.3 105 9-113 24-138 (328)
25 PF10326 7TM_GPCR_Str: Serpent 93.2 0.098 2.1E-06 36.7 2.9 101 12-112 5-118 (307)
26 PF02175 7TM_GPCR_Srb: Serpent 91.7 3.1 6.7E-05 28.5 11.0 45 72-116 81-125 (236)
27 PF10327 7TM_GPCR_Sri: Serpent 90.7 4.1 9E-05 28.8 8.8 109 5-113 8-127 (303)
28 PF02101 Ocular_alb: Ocular al 84.9 13 0.00029 27.4 9.7 67 41-107 68-147 (405)
29 PF10319 7TM_GPCR_Srj: Serpent 84.6 9.1 0.0002 27.4 7.3 108 8-115 7-127 (310)
30 PF03383 Serpentine_r_xa: Caen 82.1 0.49 1.1E-05 30.2 0.3 40 81-120 49-88 (153)
31 KOG4193|consensus 75.1 39 0.00085 26.7 9.0 88 16-109 330-419 (610)
32 PF06681 DUF1182: Protein of u 74.5 3.3 7.1E-05 27.9 2.4 98 9-112 44-153 (226)
33 PF04789 DUF621: Protein of un 72.8 31 0.00068 24.5 8.5 96 10-105 17-119 (305)
34 PF09882 DUF2109: Predicted me 61.6 23 0.00049 19.9 3.7 48 16-63 4-51 (78)
35 COG1230 CzcD Co/Zn/Cd efflux s 59.3 63 0.0014 23.1 9.0 72 10-83 125-198 (296)
36 PF10318 7TM_GPCR_Srh: Serpent 58.0 61 0.0013 22.6 9.8 103 8-110 6-119 (302)
37 PF03125 Sre: C. elegans Sre G 48.6 1E+02 0.0022 22.4 9.7 37 78-114 125-161 (365)
38 PF11446 DUF2897: Protein of u 32.4 75 0.0016 16.6 2.6 18 10-27 6-23 (55)
39 PF01534 Frizzled: Frizzled/Sm 32.3 2E+02 0.0043 20.9 8.8 36 73-108 91-126 (328)
40 PF14654 Epiglycanin_C: Mucin, 29.6 1.2E+02 0.0026 17.9 3.4 23 2-24 16-38 (106)
41 PF10852 DUF2651: Protein of u 27.7 91 0.002 17.7 2.6 23 1-23 1-23 (82)
42 KOG1172|consensus 22.1 2.7E+02 0.0059 23.3 5.1 41 23-63 649-691 (876)
43 PRK13716 leader peptide RepL; 22.0 54 0.0012 13.9 0.8 17 38-54 4-20 (26)
44 TIGR01477 RIFIN variant surfac 20.6 1.1E+02 0.0025 22.4 2.7 29 8-36 310-338 (353)
No 1
>PHA03234 DNA packaging protein UL33; Provisional
Probab=99.88 E-value=1.5e-22 Score=142.97 Aligned_cols=109 Identities=15% Similarity=0.133 Sum_probs=92.2
Q ss_pred chhHHHHHHHHHHHHHHHhHHhhhhh--eeccccCCchhhHHHHHHHHHHHhhhhchHHHHHHHhcCCCcchhHHHHHHH
Q psy3302 5 NVPYTICEVLVALGAVIGNSLVIVAF--GREKRLRRRTNYYIVSLAVADLLVGLVGIPCALLASVGLPRHLYACLFTISL 82 (123)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~N~~vl~~i--~~~~~l~~~~~~~l~~La~sdl~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~ 82 (123)
+.....+|.++.++|++||.++++++ .+++++|+++|+++.|||+||++.++...|.......+|++++..|++..++
T Consensus 32 ~~~~~~~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l~lp~~~~~~~~~w~fG~~lCk~~~~~ 111 (338)
T PHA03234 32 QILESAINGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHMLCVFFLTLNREALFNFNQAFCQCVLFI 111 (338)
T ss_pred HHHhhHHHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCchhHHHHHHHH
Confidence 35577899999999999999999854 4556678999999999999999997644443333333688999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhccccc
Q psy3302 83 LVVLCTISIFCLVAVSVDRYWAILFPMGYAR 113 (123)
Q Consensus 83 ~~~~~~~s~~~l~~ia~~R~~~v~~p~~~~~ 113 (123)
.....++|++++++||+|||+||++|.+++.
T Consensus 112 ~~~~~~~Si~~L~~ISiDRY~aIv~p~~~~~ 142 (338)
T PHA03234 112 YHASCSYSICMLAIIATIRYKTLHRRKKNDK 142 (338)
T ss_pred HHHHHHHHHHHHHHHHHHhHeeeechhhhhh
Confidence 9999999999999999999999999987653
No 2
>KOG4219|consensus
Probab=99.87 E-value=1.2e-22 Score=142.65 Aligned_cols=107 Identities=29% Similarity=0.459 Sum_probs=99.3
Q ss_pred hhHHHHHHHHHHHHHHHhHHhhhhheeccccCCchhhHHHHHHHHHHHhhhhchHHHHHHHh--cCCCcchhHHHHHHHH
Q psy3302 6 VPYTICEVLVALGAVIGNSLVIVAFGREKRLRRRTNYYIVSLAVADLLVGLVGIPCALLASV--GLPRHLYACLFTISLL 83 (123)
Q Consensus 6 ~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~La~sdl~~~~~~~~~~~~~~~--~~~~~~~~C~~~~~~~ 83 (123)
....+++.++.++++.||.++++++..+|++|+.+|+++.|||.||+.++++..+..+.... .|.+|.+.|++..++.
T Consensus 36 ~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~~W~~G~f~C~f~nf~~ 115 (423)
T KOG4219|consen 36 ALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQEWYFGSFYCRFVNFFP 115 (423)
T ss_pred HHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccccceeeeccccc
Confidence 45678899999999999999999999999999999999999999999999998887665554 6999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhcccc
Q psy3302 84 VVLCTISIFCLVAVSVDRYWAILFPMGYA 112 (123)
Q Consensus 84 ~~~~~~s~~~l~~ia~~R~~~v~~p~~~~ 112 (123)
.....+|+++++++|+|||+||.+|++-+
T Consensus 116 itav~vSVfTlvAiA~DRy~AIi~Pl~~r 144 (423)
T KOG4219|consen 116 ITAVFVSVFTLVAIAIDRYMAIIHPLQPR 144 (423)
T ss_pred hhhhhHhHHHHHHHHHHHHHHHhhhcccC
Confidence 99999999999999999999999999776
No 3
>PHA02834 chemokine receptor-like protein; Provisional
Probab=99.83 E-value=5.2e-20 Score=129.38 Aligned_cols=108 Identities=19% Similarity=0.312 Sum_probs=92.1
Q ss_pred chhHHHHHHHHHHHHHHHhHHhhhhheeccccCCchhhHHHHHHHHHHHhhhhchHHHHHHHh-cCCCcchhHHHHHHHH
Q psy3302 5 NVPYTICEVLVALGAVIGNSLVIVAFGREKRLRRRTNYYIVSLAVADLLVGLVGIPCALLASV-GLPRHLYACLFTISLL 83 (123)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~La~sdl~~~~~~~~~~~~~~~-~~~~~~~~C~~~~~~~ 83 (123)
+.....++.++.++|++||.+++.++.++++ +++.|+++.|||++|++. ....|..+.... +|.+++..|++..+..
T Consensus 28 ~~~~~~~~~li~v~~~~gN~lVi~vi~~~~~-~~~~n~~i~nLAiaDll~-~~~lP~~i~~~~~~w~~g~~~C~~~~~~~ 105 (323)
T PHA02834 28 NYFVIVFYILLFIFGLIGNVLVIAVLIVKRF-MFVVDVYLFNIAMSDLML-VFSFPFIIHNDLNEWIFGEFMCKLVLGVY 105 (323)
T ss_pred hhhHHHHHHHHHHHHHhhHHHHHHHHHhccc-cchhhhhhHHHHHHHHHH-HHHHHHHHHHHcCCcCCcchHHHhHHHHH
Confidence 3567789999999999999999998877665 457899999999999976 557787655443 5788899999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhcccccc
Q psy3302 84 VVLCTISIFCLVAVSVDRYWAILFPMGYARN 114 (123)
Q Consensus 84 ~~~~~~s~~~l~~ia~~R~~~v~~p~~~~~~ 114 (123)
..+..+|++++++||+|||.+|++|.++++.
T Consensus 106 ~~~~~~Si~tL~~IsidRY~aI~~P~~~~~~ 136 (323)
T PHA02834 106 FVGFFSNMFFVTLISIDRYILVVNATKIKNK 136 (323)
T ss_pred HHHHHHHHHHHHHHHHHHhhheeCchhccCC
Confidence 8899999999999999999999999887553
No 4
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=99.82 E-value=1.3e-19 Score=131.24 Aligned_cols=114 Identities=22% Similarity=0.414 Sum_probs=97.2
Q ss_pred CchhHHHHHHHHHHHHHHHhHHhhhhheeccccCCchhhHHHHHHHHHHHhhhhchHHHHHHHh-cCCCcchhHHHHHHH
Q psy3302 4 LNVPYTICEVLVALGAVIGNSLVIVAFGREKRLRRRTNYYIVSLAVADLLVGLVGIPCALLASV-GLPRHLYACLFTISL 82 (123)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~La~sdl~~~~~~~~~~~~~~~-~~~~~~~~C~~~~~~ 82 (123)
+......++.++.++|++||.+++.++.+ +++|+++++++.|||++|++.. ...|..+.... +|.+++..|++..++
T Consensus 97 ~~~~l~~~y~lvfvlgliGN~LVl~il~~-k~lrt~t~i~llnLAisDLl~~-l~lPf~i~~~~~~W~fg~~~Ck~~~~l 174 (417)
T PHA02638 97 ISEYIKIFYIIIFILGLFGNAAIIMILFC-KKIKTITDIYIFNLAISDLIFV-IDFPFIIYNEFDQWIFGDFMCKVISAS 174 (417)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCHhHHHHHHHHHHHHHHH-HHHHHHHHHHhccccccccchhhHHHH
Confidence 44567788999999999999999977654 7788999999999999999875 46776665443 688899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhcccccceeeee
Q psy3302 83 LVVLCTISIFCLVAVSVDRYWAILFPMGYARNVTTKI 119 (123)
Q Consensus 83 ~~~~~~~s~~~l~~ia~~R~~~v~~p~~~~~~~~~~~ 119 (123)
...+..++.+.++++++|||+||++|.++++..++++
T Consensus 175 ~~~~~~~Si~~L~~isiDRYlaIv~p~~~~~~~~~~~ 211 (417)
T PHA02638 175 YYIGFFSNMFLITLMSIDRYFAILYPISFQKYRTFNI 211 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccceecHhh
Confidence 9999999999999999999999999998877666554
No 5
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=99.81 E-value=2.6e-19 Score=126.08 Aligned_cols=115 Identities=23% Similarity=0.341 Sum_probs=99.1
Q ss_pred CchhHHHHHHHHHHHHHHHhHHhhhhheeccccCCchhhHHHHHHHHHHHhhhhchHHHHHHH--hcCCCcchhHHHHHH
Q psy3302 4 LNVPYTICEVLVALGAVIGNSLVIVAFGREKRLRRRTNYYIVSLAVADLLVGLVGIPCALLAS--VGLPRHLYACLFTIS 81 (123)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~La~sdl~~~~~~~~~~~~~~--~~~~~~~~~C~~~~~ 81 (123)
.+.....++.+++++|++||.+++.++.++ ++|++.+.++.|||++|++.++. .|...... .+|..++..|+...+
T Consensus 39 ~~~~~~~~~~~i~~~gl~gN~lvl~~~~~~-~~~~~~~~ll~~laisDll~~~~-~~~~~~~~~~~~~~~~~~~C~~~~~ 116 (335)
T PHA03087 39 NSTILIVVYSTIFFFGLVGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLFVMT-LPFQIYYYILFQWSFGEFACKIVSG 116 (335)
T ss_pred hhhHHHHHHHHHHHHHHHhhHhEEeeehhc-cccCchHHHHHHHHHHHHHHHHh-HHHHHHHHhCCCCCCCcHHHHHHHH
Confidence 456778899999999999999999998888 88999999999999999987654 45444332 257778899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhcccccceeeeee
Q psy3302 82 LLVVLCTISIFCLVAVSVDRYWAILFPMGYARNVTTKIA 120 (123)
Q Consensus 82 ~~~~~~~~s~~~l~~ia~~R~~~v~~p~~~~~~~~~~~~ 120 (123)
+......+|.++++++|+|||+++++|++|++..+++++
T Consensus 117 ~~~~~~~~S~~~l~~iaidRy~aI~~p~~~~~~~~~~~~ 155 (335)
T PHA03087 117 LYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYG 155 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhh
Confidence 999999999999999999999999999999888877664
No 6
>KOG4220|consensus
Probab=99.79 E-value=1e-20 Score=133.51 Aligned_cols=114 Identities=29% Similarity=0.451 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHHHhHHhhhhheeccccCCchhhHHHHHHHHHHHhhhhchHHHHHHHh--cCCCcchhHHHHHHHHHH
Q psy3302 8 YTICEVLVALGAVIGNSLVIVAFGREKRLRRRTNYYIVSLAVADLLVGLVGIPCALLASV--GLPRHLYACLFTISLLVV 85 (123)
Q Consensus 8 ~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~La~sdl~~~~~~~~~~~~~~~--~~~~~~~~C~~~~~~~~~ 85 (123)
..++-.++.++.++||+++++.+.-++++++..|+|+.+||.+|++.+.+++|.+..+.. .|+.+...|.++..+.+.
T Consensus 33 i~~v~~~lsLVTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t~Y~lmg~W~LG~~~CdlWLalDYv 112 (503)
T KOG4220|consen 33 IVVVTGSLSLVTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTTYTLMGYWPLGPLVCDLWLALDYV 112 (503)
T ss_pred eehhhhHHHHHhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechHHHHHHHHcccccchHHHHHHHHHHHH
Confidence 557788999999999999999999999999999999999999999999999999887765 799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhcccccceeeeeee
Q psy3302 86 LCTISIFCLVAVSVDRYWAILFPMGYARNVTTKIAV 121 (123)
Q Consensus 86 ~~~~s~~~l~~ia~~R~~~v~~p~~~~~~~~~~~~~ 121 (123)
...+|++++..|++|||..|.+|+.|+.++|.+|+.
T Consensus 113 aSNASVmNLLiISFDRYFsVTrPLtYrakRTtkrA~ 148 (503)
T KOG4220|consen 113 ASNASVMNLLIISFDRYFSVTRPLTYRAKRTTKRAG 148 (503)
T ss_pred hhhhhhhhhheeeeecceeecccccccccccchHHH
Confidence 999999999999999999999999999999998863
No 7
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=99.78 E-value=7e-19 Score=117.81 Aligned_cols=99 Identities=42% Similarity=0.564 Sum_probs=89.6
Q ss_pred HhHHhhhhheeccccCCchhhHHHHHHHHHHHhhhhchHHHHHHHh--cCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3302 22 GNSLVIVAFGREKRLRRRTNYYIVSLAVADLLVGLVGIPCALLASV--GLPRHLYACLFTISLLVVLCTISIFCLVAVSV 99 (123)
Q Consensus 22 ~N~~vl~~i~~~~~l~~~~~~~l~~La~sdl~~~~~~~~~~~~~~~--~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~ 99 (123)
||.+++.++.+++++|++.++++.|||++|++.++...|....... .|..++..|++..++...+...+.++++++++
T Consensus 1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~is~ 80 (257)
T PF00001_consen 1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLLFDDWIFSSFLCRIFGFLFYFSSFSSIFSLVAISI 80 (257)
T ss_dssp HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHSSCTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhehhhhhhhccCCChhHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8999999999999999999999999999999999888887776665 47778899999999999999999999999999
Q ss_pred HHHHHhHhhcccccceeeeee
Q psy3302 100 DRYWAILFPMGYARNVTTKIA 120 (123)
Q Consensus 100 ~R~~~v~~p~~~~~~~~~~~~ 120 (123)
|||+++++|.+|++..+++++
T Consensus 81 dRy~~i~~p~~~~~~~~~~~~ 101 (257)
T PF00001_consen 81 DRYLAICHPLRYRRIRTRRRA 101 (257)
T ss_dssp HHHHHHHSHHTHHHHSCHHHH
T ss_pred ccccccccccccccccccccc
Confidence 999999999999999886543
No 8
>PHA03235 DNA packaging protein UL33; Provisional
Probab=99.77 E-value=3.3e-18 Score=123.64 Aligned_cols=108 Identities=20% Similarity=0.253 Sum_probs=86.2
Q ss_pred chhHHHHHHHHHHHHHHHhHHhhhhhee-cccc-CCchhhHHHHHHHHHHHhhhhchHHHHHHHh-cCCCcchhHHHHHH
Q psy3302 5 NVPYTICEVLVALGAVIGNSLVIVAFGR-EKRL-RRRTNYYIVSLAVADLLVGLVGIPCALLASV-GLPRHLYACLFTIS 81 (123)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~N~~vl~~i~~-~~~l-~~~~~~~l~~La~sdl~~~~~~~~~~~~~~~-~~~~~~~~C~~~~~ 81 (123)
.....+++.++.++|++||.++++++.+ +++. +++.+.++.|||++|++. ....|..+.... .+..++..|++..+
T Consensus 32 ~~~~~~~~~li~vvGiigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~-l~~lP~~i~~~~~~~~~g~~~Ck~~~~ 110 (409)
T PHA03235 32 RTTETFINLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLT-VFVLPFIMLSNQGLLSGSVAGCKFASL 110 (409)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHH-HHHHHHHHHhcCccccCCCCeehhHHH
Confidence 4567889999999999999999987543 3332 356789999999999987 456776654332 23334689999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhccccc
Q psy3302 82 LLVVLCTISIFCLVAVSVDRYWAILFPMGYAR 113 (123)
Q Consensus 82 ~~~~~~~~s~~~l~~ia~~R~~~v~~p~~~~~ 113 (123)
+...+..+|.+++++||+|||.+|++|.+++.
T Consensus 111 l~~~~~~~Si~tL~~ISiDRY~aI~~p~~~~~ 142 (409)
T PHA03235 111 LYYASCTVGFATVALIAADRYRVIHQRTRARS 142 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHeechhhccC
Confidence 99999999999999999999999999976544
No 9
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=99.68 E-value=2.3e-17 Score=112.77 Aligned_cols=104 Identities=26% Similarity=0.371 Sum_probs=94.1
Q ss_pred HHHHHHhHHhhhhheeccccCCchhhHHHHHHHHHHHhhhhchHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q psy3302 17 LGAVIGNSLVIVAFGREKRLRRRTNYYIVSLAVADLLVGLVGIPCALLASVGLPRHLYACLFTISLLVVLCTISIFCLVA 96 (123)
Q Consensus 17 ~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~La~sdl~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ 96 (123)
++|++||..++.++.++|++|+|.+++++.+|++|++.+....|.......+.......|....+...++...+...+..
T Consensus 2 ~ig~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~~~~~~~~i~~~~Cf~~~~~~~f~~~~qs~~~l~ 81 (257)
T PF10320_consen 2 IIGLFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPFMLFLFRDHQITRSECFWQIFFYIFFQCAQSVIMLA 81 (257)
T ss_pred EEEEEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHHHHHHHhheeccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999888888877666555667789999999999999999999999
Q ss_pred HHHHHHHHhHhhcccccceeeeee
Q psy3302 97 VSVDRYWAILFPMGYARNVTTKIA 120 (123)
Q Consensus 97 ia~~R~~~v~~p~~~~~~~~~~~~ 120 (123)
|++||++||+.|++|++..+++..
T Consensus 82 i~iDr~iaV~~P~~Y~~~~~~~y~ 105 (257)
T PF10320_consen 82 IAIDRLIAVCFPLRYRTISTRKYL 105 (257)
T ss_pred HHhhheeeEeehhhhhhcccccch
Confidence 999999999999999999988743
No 10
>KOG2087|consensus
Probab=99.37 E-value=1.1e-12 Score=91.82 Aligned_cols=110 Identities=25% Similarity=0.347 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHHhHHhhhhheeccccCCchhhHHHHHHHHHHHhhhhchHHHHHHHh----------cCCCcchhHH
Q psy3302 8 YTICEVLVALGAVIGNSLVIVAFGREKRLRRRTNYYIVSLAVADLLVGLVGIPCALLASV----------GLPRHLYACL 77 (123)
Q Consensus 8 ~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~La~sdl~~~~~~~~~~~~~~~----------~~~~~~~~C~ 77 (123)
+...-+++..+.+.||..++......+...++...+++|+|.+|+++++........... .|. ....|+
T Consensus 27 lRi~vW~i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiYl~~ia~vD~~~~gey~~~ai~W~-tg~gC~ 105 (363)
T KOG2087|consen 27 LRISVWVIALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIYLGLIASVDAKTRGEYYKHAIDWQ-TGLGCP 105 (363)
T ss_pred eeehhhhhhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchHHHHHHHhhHHHHHHHHHHHHhhh-hcCCCc
Confidence 345678999999999999999888887777799999999999999998765544443322 122 226899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccceeee
Q psy3302 78 FTISLLVVLCTISIFCLVAVSVDRYWAILFPMGYARNVTTK 118 (123)
Q Consensus 78 ~~~~~~~~~~~~s~~~l~~ia~~R~~~v~~p~~~~~~~~~~ 118 (123)
..+|+..+....|++.++.+++||++.|++|++.++.-+.+
T Consensus 106 ~aGflavFASElSv~~LT~itlEr~l~i~~p~~~~~~~~lr 146 (363)
T KOG2087|consen 106 VAGFLAVFASELSVFLLTLITLERWLSITYPFRLDRKAKLR 146 (363)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhheeccccCCCccccc
Confidence 99999999999999999999999999999999987766655
No 11
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=99.17 E-value=1.7e-10 Score=79.60 Aligned_cols=107 Identities=18% Similarity=0.244 Sum_probs=83.9
Q ss_pred HHHHHHHHhHHhhhhheeccccCCchhhHHHHHHHHHHHhhhhchHHHHHHHh-cCCC-cchhH-HHHHHHHHHHHHHHH
Q psy3302 15 VALGAVIGNSLVIVAFGREKRLRRRTNYYIVSLAVADLLVGLVGIPCALLASV-GLPR-HLYAC-LFTISLLVVLCTISI 91 (123)
Q Consensus 15 ~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~La~sdl~~~~~~~~~~~~~~~-~~~~-~~~~C-~~~~~~~~~~~~~s~ 91 (123)
+.++|++.|..++..+.+.+++|++.+.+..+.|++|.+.++.......-... +.+. ++... ...+.....+...+.
T Consensus 3 ~s~~G~~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n~i~~~~~l~~~~P~~~~~~~~~~~~~~s~~~g~~~~~~y~~~~ 82 (274)
T PF10328_consen 3 ISIIGIILNWLVFIIIFKLKSLRNSFGILCASQAIANIIICLIFLFWVVPMTLLDISFLPSSLNSIIFGFIGMFCYFIGP 82 (274)
T ss_pred eeHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCchHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999987654322221111 2222 33333 444778888888999
Q ss_pred HHHHHHHHHHHHHhHhhcccccceeeeeee
Q psy3302 92 FCLVAVSVDRYWAILFPMGYARNVTTKIAV 121 (123)
Q Consensus 92 ~~l~~ia~~R~~~v~~p~~~~~~~~~~~~~ 121 (123)
.+..+||++|+.|+..|.+|+++.+.+.+.
T Consensus 83 ~~~~liaiNRf~ai~fP~~y~~~fs~~~T~ 112 (274)
T PF10328_consen 83 LSHLLIAINRFCAIFFPFKYKKIFSFKNTI 112 (274)
T ss_pred HHHHHHHHHHHheeeeHHHHHhHcCcccee
Confidence 999999999999999999999988876653
No 12
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=98.96 E-value=9.8e-09 Score=72.09 Aligned_cols=98 Identities=26% Similarity=0.339 Sum_probs=75.5
Q ss_pred HHHHHHHHHhHHhhhhheeccccCC-chhhHHHHHHHHHHHhhhhchHHHHHHHh-cC------CCcc----hhHHHHHH
Q psy3302 14 LVALGAVIGNSLVIVAFGREKRLRR-RTNYYIVSLAVADLLVGLVGIPCALLASV-GL------PRHL----YACLFTIS 81 (123)
Q Consensus 14 ~~~~~g~~~N~~vl~~i~~~~~l~~-~~~~~l~~La~sdl~~~~~~~~~~~~~~~-~~------~~~~----~~C~~~~~ 81 (123)
++..+|+++|...+.++.+++ +|+ +.|.++..+|++|+...+...+....... .+ +... ........
T Consensus 5 ~~~~~g~~~N~~h~~VLtrk~-mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~~~~~~~C~~~~sy~~~~~~~~~~~ 83 (318)
T PF10324_consen 5 ILSIFGLFINIFHLIVLTRKS-MRSSSINILLIGIAICDLLYMLSILIWELFFFIIFYEDDECIPPYSYFWAYFKLIMES 83 (318)
T ss_pred EEeHHHHHHHHHHhhhcCChh-hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHH
Confidence 346789999999998886655 566 89999999999999998887777664443 21 0111 22345557
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhcccc
Q psy3302 82 LLVVLCTISIFCLVAVSVDRYWAILFPMGYA 112 (123)
Q Consensus 82 ~~~~~~~~s~~~l~~ia~~R~~~v~~p~~~~ 112 (123)
+...+...|.|..+.||+.|++++++|...+
T Consensus 84 l~~~~~~~S~WL~V~mA~iR~l~i~~p~~~~ 114 (318)
T PF10324_consen 84 LSDIFRRISIWLGVLMALIRYLSIKFPMSSR 114 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 8888899999999999999999999998654
No 13
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.
Probab=98.38 E-value=2.7e-06 Score=58.90 Aligned_cols=118 Identities=12% Similarity=0.101 Sum_probs=82.8
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhHHhhhhheeccccCCchhhHHHHHHHHHHHhhhhchHHHHHHHhcCCCcch-----h
Q psy3302 1 MDALNVPYTICEVLVALGAVIGNSLVIVAFGREKRLRRRTNYYIVSLAVADLLVGLVGIPCALLASVGLPRHLY-----A 75 (123)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~La~sdl~~~~~~~~~~~~~~~~~~~~~~-----~ 75 (123)
|.....+...+-.+...+....|...+..+..+|+.|++...+.-.....|.+.+....+...........++. .
T Consensus 1 M~~~~~iv~~i~i~~s~~~~~iN~~lL~~if~~Kk~kk~~l~LfY~Rf~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (273)
T PF10316_consen 1 MNVSAIIVSIIGIIFSIITCLINFYLLYSIFYSKKKKKPDLSLFYFRFAIDVFYGFSVFIYLIYYILFSLFPEFLDYKNL 80 (273)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCEEeeHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhccccE
Confidence 44445566677788888999999999988887766455666666668899999988876665544432111221 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccceeee
Q psy3302 76 CLFTISLLVVLCTISIFCLVAVSVDRYWAILFPMGYARNVTTK 118 (123)
Q Consensus 76 C~~~~~~~~~~~~~s~~~l~~ia~~R~~~v~~p~~~~~~~~~~ 118 (123)
=...+......+.........||+||..|+..|..||+.+++-
T Consensus 81 if~~~~p~~~~~~iR~~l~~~Ia~dR~~A~~fPI~y~~~r~k~ 123 (273)
T PF10316_consen 81 IFYIGWPSSNLGSIRSILALIIALDRVFAVYFPIFYHNYRKKI 123 (273)
T ss_pred EeehhhhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCccc
Confidence 2223334445567778888899999999999999998877653
No 14
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=98.16 E-value=4.3e-05 Score=50.74 Aligned_cols=74 Identities=19% Similarity=0.200 Sum_probs=60.1
Q ss_pred ccCCchhhHHHHHHHHHHHhhhhchHHHHHHHh--cCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy3302 35 RLRRRTNYYIVSLAVADLLVGLVGIPCALLASV--GLPRHLYACLFTISLLVVLCTISIFCLVAVSVDRYWAILFP 108 (123)
Q Consensus 35 ~l~~~~~~~l~~La~sdl~~~~~~~~~~~~~~~--~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~R~~~v~~p 108 (123)
++|.-.+-++.||.++|+..++........... +...++..|...+++...+-..+.+...+||++-|+.+.+|
T Consensus 31 r~~~fR~~LIl~L~~aD~~qal~~~i~~~~~l~~~~i~~~s~~C~aqGf~~q~g~~~sd~~ilaIAihT~l~v~~~ 106 (201)
T PF11710_consen 31 RRRSFRHQLILNLLLADFIQALAFLISPIRWLARGGIIAPSPFCQAQGFFLQVGDEASDLWILAIAIHTFLIVFRP 106 (201)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345556679999999999998776553333333 33446789999999999999999999999999999999999
No 15
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=98.13 E-value=2.1e-05 Score=55.24 Aligned_cols=100 Identities=20% Similarity=0.341 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHHHHHHhHHhhhhheeccccCCchhhHHHHHHHHHHHhhhhchHHHHHHHhcCCCcchhHHHHHHHHHHH
Q psy3302 7 PYTICEVLVALGAVIGNSLVIVAFGREKRLRRRTNYYIVSLAVADLLVGLVGIPCALLASVGLPRHLYACLFTISLLVVL 86 (123)
Q Consensus 7 ~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~La~sdl~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~ 86 (123)
....+..+...++++|-..++......+++|++.+-++..++++|++..+........ .....++..|....++..++
T Consensus 8 ~~~~i~~~~s~lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~~~~~~~--~~~~~~s~lC~~Qafliq~f 85 (303)
T PF05462_consen 8 TLYAIELVASVLSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVASMIMTLS--PSAGENSFLCQFQAFLIQFF 85 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHhc--ccCCCCCcchhhHhHHHHHh
Confidence 3456677778999999999999999999999999999999999999876543322111 23445678899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHhh
Q psy3302 87 CTISIFCLVAVSVDRYWAILFP 108 (123)
Q Consensus 87 ~~~s~~~l~~ia~~R~~~v~~p 108 (123)
..++.+-.++||++=|..+.+.
T Consensus 86 ~~as~lWt~~iA~nly~~~~~~ 107 (303)
T PF05462_consen 86 MLASFLWTLCIAFNLYLTFVKR 107 (303)
T ss_pred hHHHHHHHHHHHHHhhheeEEc
Confidence 9999999999999999988764
No 16
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=98.09 E-value=1.1e-05 Score=56.13 Aligned_cols=103 Identities=15% Similarity=0.200 Sum_probs=71.2
Q ss_pred HHHHHHhHHhhhhheeccc----cCCchhhHHHHHHHHHHHhhhhchHHHHHHHhcC------CCcchhHHHHHHHHHHH
Q psy3302 17 LGAVIGNSLVIVAFGREKR----LRRRTNYYIVSLAVADLLVGLVGIPCALLASVGL------PRHLYACLFTISLLVVL 86 (123)
Q Consensus 17 ~~g~~~N~~vl~~i~~~~~----l~~~~~~~l~~La~sdl~~~~~~~~~~~~~~~~~------~~~~~~C~~~~~~~~~~ 86 (123)
.+.++-...++..+.+.|+ ++++.+.++.+-+++|++..+...........++ ..++..-++........
T Consensus 6 ~~tlply~~il~~l~~~r~~~~~~~~~Fy~l~~~~~iaDi~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~y~~ 85 (283)
T PF10323_consen 6 IVTLPLYIFILYCLLKLRKRSKTFKSTFYTLLIQHCIADILSMLFYFLLQRFRAYGFFNDFYFSYQTYYAAIYYNIAYYF 85 (283)
T ss_pred eehHHHHHHHHHHHHHcccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHHH
Confidence 4455666677766665543 4578999999999999998766543333222211 12223356666677777
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhc-ccccceeeee
Q psy3302 87 CTISIFCLVAVSVDRYWAILFPM-GYARNVTTKI 119 (123)
Q Consensus 87 ~~~s~~~l~~ia~~R~~~v~~p~-~~~~~~~~~~ 119 (123)
........+.+|++|+.+|++|. ++++..++.+
T Consensus 86 ~~~~~~gi~lls~nR~~ai~~P~~~~~~~~~~~~ 119 (283)
T PF10323_consen 86 LYIQCIGIVLLSLNRYLAICFPTSRHTKFWQPAK 119 (283)
T ss_pred HHHHHHhHHHHHHhhhheEEeecHHHhhhccccc
Confidence 88888999999999999999999 6766666543
No 17
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=97.85 E-value=0.00032 Score=49.61 Aligned_cols=118 Identities=14% Similarity=0.074 Sum_probs=84.6
Q ss_pred CCchhHHHHHHHHHHHHHHHhHHhhhhheeccccCCchhhHHHHHHHHHHHhhhhc-hHHHHHHHhcCCC--cchhHHHH
Q psy3302 3 ALNVPYTICEVLVALGAVIGNSLVIVAFGREKRLRRRTNYYIVSLAVADLLVGLVG-IPCALLASVGLPR--HLYACLFT 79 (123)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~La~sdl~~~~~~-~~~~~~~~~~~~~--~~~~C~~~ 79 (123)
..+......+.+.+++-.+.+...+.++.+++..|.|.+-.+.-|++.|+...... +...+....+... .+..=.+.
T Consensus 30 ~~~p~~G~~~~~~g~~~~~lY~p~~~~i~~~~~~k~~~ykiM~~L~i~Di~~l~~~si~tG~l~i~G~vfC~~P~~~~i~ 109 (313)
T PF10321_consen 30 VKRPILGIYFLIFGIIIIILYIPCLIAIFKKKLFKMSCYKIMFFLAIFDIIQLFINSIITGILAIFGAVFCSYPRFIYIM 109 (313)
T ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHhhhhhhhHHHhcCccccCCchHhhhh
Confidence 34567788888889998999999999988877777899999999999999986543 2222222222111 22333455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccceeeeee
Q psy3302 80 ISLLVVLCTISIFCLVAVSVDRYWAILFPMGYARNVTTKIA 120 (123)
Q Consensus 80 ~~~~~~~~~~s~~~l~~ia~~R~~~v~~p~~~~~~~~~~~~ 120 (123)
+.+...+-..+......+|++|..-+..|.........++.
T Consensus 110 G~~~~~~W~~~c~~~i~LainR~~~l~~~~~~~~~F~g~~~ 150 (313)
T PF10321_consen 110 GCIALGSWCGSCIICILLAINRCCELNFPFKLKFLFEGKRT 150 (313)
T ss_pred hccchhhHHHHHHHHHHHHHHHHHHHhcchhhHHhhcCceE
Confidence 55666667778888899999999999998766666555543
No 18
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=97.82 E-value=0.00038 Score=48.99 Aligned_cols=104 Identities=16% Similarity=0.143 Sum_probs=76.9
Q ss_pred CchhHHHHHHHHHHHHHHHhHHhhhhheec---cccCCchhhHHHHHHHHHHHhhhhchHHHHHHHh--cCCCcchhHHH
Q psy3302 4 LNVPYTICEVLVALGAVIGNSLVIVAFGRE---KRLRRRTNYYIVSLAVADLLVGLVGIPCALLASV--GLPRHLYACLF 78 (123)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~N~~vl~~i~~~---~~l~~~~~~~l~~La~sdl~~~~~~~~~~~~~~~--~~~~~~~~C~~ 78 (123)
.+.+..++.....++|++||+.+..+-..+ ++.-+|.+..+.+||+++++.............. .....+..++.
T Consensus 5 ~~~i~~~i~~~~~~~Gi~~N~FI~~vn~~~w~k~~~l~~~d~IL~~La~sr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (303)
T PF05296_consen 5 LEIIFLIILVVEFIIGILGNGFIVLVNCSDWVKSRKLSPSDQILTSLAISRILLQWVILLNSFLSFFFPNIYFSENVYKI 84 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhhHHHH
Confidence 456677888999999999999988775543 2223589999999999999887655444443333 23345567888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy3302 79 TISLLVVLCTISIFCLVAVSVDRYWAILF 107 (123)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~ia~~R~~~v~~ 107 (123)
..+...+....|.|..+.+++-=+.-|..
T Consensus 85 ~~~~~~f~~~~s~W~tt~LsvfYcvKI~~ 113 (303)
T PF05296_consen 85 IDFLWMFSNSSSLWFTTWLSVFYCVKIAN 113 (303)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHheeeec
Confidence 88889999999999999988855554444
No 19
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=97.39 E-value=0.0063 Score=43.21 Aligned_cols=105 Identities=14% Similarity=0.120 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHhHHhhhhheeccccCCchhhHHHHHHHHHHHhhhhchHHHHHHHhc---------CCCcchhHHHHH
Q psy3302 10 ICEVLVALGAVIGNSLVIVAFGREKRLRRRTNYYIVSLAVADLLVGLVGIPCALLASVG---------LPRHLYACLFTI 80 (123)
Q Consensus 10 ~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~La~sdl~~~~~~~~~~~~~~~~---------~~~~~~~C~~~~ 80 (123)
.+..++++.|++.++..+.....++..|.-..+++....++.++.++.-.........+ ...+...|...-
T Consensus 21 ~~~~~~s~~~~~~~~~~~~~~~~~~~~H~N~ril~~~~~~~~l~~~~~r~~~h~~~l~~~~~~~~~Cd~~~~~~~C~~lR 100 (324)
T PF10292_consen 21 IFNLLLSIIAFPVIIYALWKIRNSKLFHFNTRILFIVHCFSFLIHCTGRIILHTYDLYNYFFPDDPCDMIPSTYRCFILR 100 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccccchhHHHHHH
Confidence 45667777788888887777777777888888888888989988865433222211211 122346687777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccc
Q psy3302 81 SLLVVLCTISIFCLVAVSVDRYWAILFPMGYARN 114 (123)
Q Consensus 81 ~~~~~~~~~s~~~l~~ia~~R~~~v~~p~~~~~~ 114 (123)
....++......+..++++||++|-.++-+|-+.
T Consensus 101 ~~~~~~~~~~~~t~v~l~IER~iAT~~~~~YE~~ 134 (324)
T PF10292_consen 101 IPYNFGLFLVSFTTVSLVIERTIATFFSKSYEKS 134 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCC
Confidence 7888889999999999999999999998777654
No 20
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=97.25 E-value=0.0031 Score=44.04 Aligned_cols=101 Identities=14% Similarity=0.143 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHhHHhhhhheec-cccCCchhhHHHHHHHHHHHhhhhchHHHHHHHhc------------CCCcchhH
Q psy3302 10 ICEVLVALGAVIGNSLVIVAFGRE-KRLRRRTNYYIVSLAVADLLVGLVGIPCALLASVG------------LPRHLYAC 76 (123)
Q Consensus 10 ~~~~~~~~~g~~~N~~vl~~i~~~-~~l~~~~~~~l~~La~sdl~~~~~~~~~~~~~~~~------------~~~~~~~C 76 (123)
..+.+.+.+|+..|.+.++.+.++ ++.-++..+++.|-|++|+..++.....+.-...+ ...++..|
T Consensus 3 i~~~~~~~~~~~~n~~Ll~~i~~~tp~~l~~~~~~l~~~~~~~~~~~~~~~~~q~R~i~~~~~~~~~~~GpC~~~~~~~C 82 (292)
T PF10317_consen 3 IYHPIFFILGIILNILLLYLIIFKTPKSLRTYSILLLNTAIFDLISIISAFLTQPRIIPNGTSIAVISYGPCRYFGPWFC 82 (292)
T ss_pred EeHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcEEEEeeecceecCcHHH
Confidence 356788999999999999777654 33334688999999999999876554333221111 12356789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcc
Q psy3302 77 LFTISLLVVLCTISIFCLVAVSVDRYWAILFPMG 110 (123)
Q Consensus 77 ~~~~~~~~~~~~~s~~~l~~ia~~R~~~v~~p~~ 110 (123)
.....+...+...+.+.+..--..||..+.++-.
T Consensus 83 ~~~y~~~~~~~~~s~~~i~~sf~yRy~iL~~~~~ 116 (292)
T PF10317_consen 83 FFCYHIMLHFSIHSGWSIILSFYYRYYILRNPSP 116 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 9888888889999999999999999999988743
No 21
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=97.22 E-value=0.0062 Score=41.90 Aligned_cols=107 Identities=11% Similarity=0.168 Sum_probs=74.7
Q ss_pred HHHHHHHHHHhHHhhhhheeccc--c-CCchhhHHHHHHHHHHHhhhhchHH-HHHHH--------hc-CCCcchhHHHH
Q psy3302 13 VLVALGAVIGNSLVIVAFGREKR--L-RRRTNYYIVSLAVADLLVGLVGIPC-ALLAS--------VG-LPRHLYACLFT 79 (123)
Q Consensus 13 ~~~~~~g~~~N~~vl~~i~~~~~--l-~~~~~~~l~~La~sdl~~~~~~~~~-~~~~~--------~~-~~~~~~~C~~~ 79 (123)
.+-++.+++.+..++..+.++++ . +++.+.+...=++.|++.-+...+. .+... .. ....+....+.
T Consensus 5 ~~Ygi~s~~l~~~~~~~i~~~~~~~~~~~sFy~l~~~d~~~ni~~~ln~~~~~Rl~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (275)
T PF02118_consen 5 LIYGIPSLILYIFILYVIWKSKKKSYFKSSFYRLYIMDLIMNILTYLNTWITLRLPSYTPPFCPFFLPFFENPPFFLNIF 84 (275)
T ss_pred hhHHHHHHHHHHHHHHHHHHhccccccCCccHHHHHHHhHHHHHHHHHHHHHHHhccccCccchhHHHHHcCCcHHHHHH
Confidence 34466777788888888877766 4 6677777777777777664333221 11111 00 12234566777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccceeeee
Q psy3302 80 ISLLVVLCTISIFCLVAVSVDRYWAILFPMGYARNVTTKI 119 (123)
Q Consensus 80 ~~~~~~~~~~s~~~l~~ia~~R~~~v~~p~~~~~~~~~~~ 119 (123)
.++...+..+...+...++++|+-++..|.++.+.+++..
T Consensus 85 ~~l~~~~~~~Q~~~~~~is~nR~t~v~~p~~~~~~W~~~~ 124 (275)
T PF02118_consen 85 YFLQYYFAYVQYLSTILISLNRFTSVLFPIRYEKFWKRYY 124 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHhhh
Confidence 7888889999999999999999999999999998888654
No 22
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=97.11 E-value=0.0006 Score=47.12 Aligned_cols=70 Identities=24% Similarity=0.231 Sum_probs=56.3
Q ss_pred ccCCchhhHHHHHHHHHHHhhhh-chHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy3302 35 RLRRRTNYYIVSLAVADLLVGLV-GIPCALLASVGLPRHLYACLFTISLLVVLCTISIFCLVAVSVDRYWAIL 106 (123)
Q Consensus 35 ~l~~~~~~~l~~La~sdl~~~~~-~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~R~~~v~ 106 (123)
+..+|.|..+.+||++|.+..+. ++|..........++|..||+..++...+...|+.+.+.++. |.||+
T Consensus 6 ~r~kp~dlIl~hLa~aN~lvLl~rGip~~~~~~~~~~~~d~gCK~v~Y~~RV~RglSictTCLLSv--fQAIt 76 (265)
T PF03402_consen 6 HRLKPIDLILIHLALANILVLLSRGIPQTMAFFGWKFFDDIGCKIVFYIYRVARGLSICTTCLLSV--FQAIT 76 (265)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcccCCCceeeeeeeehHHhchhhHHhhhHHHH--HhhEE
Confidence 44679999999999999998766 666543333333468899999999999999999999999998 66666
No 23
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=96.02 E-value=0.0041 Score=42.02 Aligned_cols=99 Identities=17% Similarity=0.098 Sum_probs=3.8
Q ss_pred HHHHHHHHHHHHHhHHhhhhheeccccCCchhhHHHHHHHHHHHhhhhchHHHHHHHhc-CCCcchhHHHHHHHHHHHHH
Q psy3302 10 ICEVLVALGAVIGNSLVIVAFGREKRLRRRTNYYIVSLAVADLLVGLVGIPCALLASVG-LPRHLYACLFTISLLVVLCT 88 (123)
Q Consensus 10 ~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~La~sdl~~~~~~~~~~~~~~~~-~~~~~~~C~~~~~~~~~~~~ 88 (123)
.+..+-+.+++++-...+......|++|+..+....|+++++++..+...........+ ....+..|.....+..++..
T Consensus 5 ~i~~vg~~~Si~~ll~~i~~~~~~r~lr~~~~~i~~~l~~sll~~~~~~l~~~~~~~~~~~~~~~~~C~~~a~~~hy~~l 84 (242)
T PF00002_consen 5 IISYVGCSLSIICLLLTIITYLLFRKLRSFRNKIHLNLCLSLLLANLSFLIGISQTFSPISTTNHCLCRAIAILLHYFFL 84 (242)
T ss_dssp HHHHHHHH------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHheehhhccccccccccccchhhhhHhHHHHH
Confidence 34444555566665555555555577788778888999999988765433221111111 11123359999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHhh
Q psy3302 89 ISIFCLVAVSVDRYWAILFP 108 (123)
Q Consensus 89 ~s~~~l~~ia~~R~~~v~~p 108 (123)
++..-+.+.++|-|..+..+
T Consensus 85 a~f~Wm~~~~~~l~~~~~~~ 104 (242)
T PF00002_consen 85 ASFFWMLVEAFYLYRLLVKV 104 (242)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHhheeEEEe
Confidence 99999999999999988776
No 24
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=95.11 E-value=0.4 Score=34.33 Aligned_cols=105 Identities=19% Similarity=0.204 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHhHHhhhhheeccccCCch-hhHHHHHHHHHHHhhhhchH--HHHHHHh-------cCCCcchhHHH
Q psy3302 9 TICEVLVALGAVIGNSLVIVAFGREKRLRRRT-NYYIVSLAVADLLVGLVGIP--CALLASV-------GLPRHLYACLF 78 (123)
Q Consensus 9 ~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~-~~~l~~La~sdl~~~~~~~~--~~~~~~~-------~~~~~~~~C~~ 78 (123)
..+..++.+++.++....+..+.++.-.++++ .++..+|..+++=....... ..+.... +..+.+..|..
T Consensus 24 ~~~~~~~~~~t~~~s~~Ai~~l~~ksif~~sTr~LL~~~l~~a~~Hq~~y~~~~~~~lyrsf~~~~dpC~i~f~~~eC~~ 103 (328)
T PF02117_consen 24 QIFILIIIIITFIFSVFAIKKLWKKSIFSNSTRILLISNLLFANIHQISYAIIQIWSLYRSFFYSDDPCSILFTSSECFP 103 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeEeecCceee
Confidence 35566677778888888888888877777754 55555666665533222111 1111111 12334577988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccccc
Q psy3302 79 TISLLVVLCTISIFCLVAVSVDRYWAILFPMGYAR 113 (123)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~ia~~R~~~v~~p~~~~~ 113 (123)
......++.....+.-.++.+||.+|-..|-.+++
T Consensus 104 ~~~~~~~~~~~~~~~q~aL~idRl~at~~~~~~~~ 138 (328)
T PF02117_consen 104 YYYFYYFTNSGMIFIQFALTIDRLLATFFPKYYSK 138 (328)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhh
Confidence 88888888888889999999999999988855543
No 25
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=93.18 E-value=0.098 Score=36.68 Aligned_cols=101 Identities=12% Similarity=0.124 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHhHHhhhhheeccccCC-chhhHHHHHHHHHHHhhhhchHH---HHHHHh---------cCCCcchhHHH
Q psy3302 12 EVLVALGAVIGNSLVIVAFGREKRLRR-RTNYYIVSLAVADLLVGLVGIPC---ALLASV---------GLPRHLYACLF 78 (123)
Q Consensus 12 ~~~~~~~g~~~N~~vl~~i~~~~~l~~-~~~~~l~~La~sdl~~~~~~~~~---~~~~~~---------~~~~~~~~C~~ 78 (123)
.-+...++++.|.+.++.+.++.+.+. .-..++...|+.|+..+...... ...... +...+....+.
T Consensus 5 ~~~~~~~s~~~N~~Li~Li~~~s~k~~G~Yk~Lm~~fs~~~i~fs~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (307)
T PF10326_consen 5 QYIGFVLSLFLNSLLIYLILTKSPKSLGSYKYLMIYFSIFEIIFSILDFLVQPIIHSYGSSFVVFSDSGPFFLSKSIGQI 84 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEehhHHHHHHHHHHHHHHHhceeecCCeeEEEeecccccccchheee
Confidence 345678899999999988776544333 44666777888898887654322 111100 01112223344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccc
Q psy3302 79 TISLLVVLCTISIFCLVAVSVDRYWAILFPMGYA 112 (123)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~ia~~R~~~v~~p~~~~ 112 (123)
.......+...+...+..-=+.||.++++|-+.+
T Consensus 85 l~~~y~~~f~~~~~llaihFiYRY~av~~~~~l~ 118 (307)
T PF10326_consen 85 LLAIYCGCFGMSFSLLAIHFIYRYWAVCRPKKLR 118 (307)
T ss_pred hhhhhhhhHHHHHHHHHhHhhhheeeeccchhhc
Confidence 4444555566666677777789999999997543
No 26
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=91.69 E-value=3.1 Score=28.49 Aligned_cols=45 Identities=16% Similarity=0.220 Sum_probs=38.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccccccee
Q psy3302 72 HLYACLFTISLLVVLCTISIFCLVAVSVDRYWAILFPMGYARNVT 116 (123)
Q Consensus 72 ~~~~C~~~~~~~~~~~~~s~~~l~~ia~~R~~~v~~p~~~~~~~~ 116 (123)
+...++.......+.++.+...-..+++||+.|...+-+|.+.++
T Consensus 81 ~~~~~K~~h~~~~flmT~~ml~PigftIERfiAl~~A~~YE~~r~ 125 (236)
T PF02175_consen 81 DPTLFKYGHLTGLFLMTIPMLFPIGFTIERFIALKMAEKYENTRT 125 (236)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccCce
Confidence 446678888888899999999999999999999999877776554
No 27
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=90.71 E-value=4.1 Score=28.79 Aligned_cols=109 Identities=16% Similarity=0.081 Sum_probs=67.3
Q ss_pred chhHHHHHHHHHHHHHHHhHHhhhhheec-cccCCchhhHH---HHHHHHHHHhhhhchHHHHHHHhcCCC-c------c
Q psy3302 5 NVPYTICEVLVALGAVIGNSLVIVAFGRE-KRLRRRTNYYI---VSLAVADLLVGLVGIPCALLASVGLPR-H------L 73 (123)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~N~~vl~~i~~~-~~l~~~~~~~l---~~La~sdl~~~~~~~~~~~~~~~~~~~-~------~ 73 (123)
..++...+-+++.++++.|...++.+..+ +++.+=.++++ ....++|+-.++..-|..+....+... | +
T Consensus 8 P~~li~~~~~ig~iS~~~n~~~iyLi~fks~k~~~fry~ll~~Qi~~~l~di~~t~L~qpipLfP~~agy~~G~l~~~f~ 87 (303)
T PF10327_consen 8 PQWLINYYHIIGVISFILNSLGIYLIIFKSPKLDNFRYYLLYFQISCTLTDIHLTFLMQPIPLFPIPAGYCVGFLARYFG 87 (303)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHheeEEEecCCccchhhHHHHHHHHHHHhhhhhhhhccchhhcceeEEEEEeehhhcCC
Confidence 34677788899999999999999876655 44444333333 335668888777766666654432111 1 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccccc
Q psy3302 74 YACLFTISLLVVLCTISIFCLVAVSVDRYWAILFPMGYAR 113 (123)
Q Consensus 74 ~~C~~~~~~~~~~~~~s~~~l~~ia~~R~~~v~~p~~~~~ 113 (123)
..++....+.........-.+..--+.|+.++.+..+.++
T Consensus 88 i~~h~~~~i~~~l~~~q~~~L~~CF~~KHQaIa~i~~~~~ 127 (303)
T PF10327_consen 88 ISSHYLMTIWIFLFIFQIESLVICFLRKHQAIARILSKHV 127 (303)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Confidence 2233333444444555555566667788999988765544
No 28
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=84.94 E-value=13 Score=27.42 Aligned_cols=67 Identities=21% Similarity=0.102 Sum_probs=49.1
Q ss_pred hhHHHHHHHHHHHhhhhchHHHHHHHhcCC-------------CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy3302 41 NYYIVSLAVADLLVGLVGIPCALLASVGLP-------------RHLYACLFTISLLVVLCTISIFCLVAVSVDRYWAILF 107 (123)
Q Consensus 41 ~~~l~~La~sdl~~~~~~~~~~~~~~~~~~-------------~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~R~~~v~~ 107 (123)
.-.+..+++||++.++..+.-...+..... ++...|........++..++.+-..+-|+|=|+.+.+
T Consensus 68 ~rIl~~la~aDlLaclGVivRS~vWl~~p~~~~s~s~~~~~d~wp~afCv~ss~WIq~fYsAtfwWtfcYAVDv~Lv~~~ 147 (405)
T PF02101_consen 68 RRILFWLAVADLLACLGVIVRSSVWLGFPNFIDSISDVNGTDIWPAAFCVGSSMWIQLFYSATFWWTFCYAVDVYLVIRR 147 (405)
T ss_pred chhHHHHHHHHHHhhhhHHHHhhhhhcCCcccccccCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeec
Confidence 457888999999987655444433332111 1236799888888889999999999999999998755
No 29
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=84.56 E-value=9.1 Score=27.40 Aligned_cols=108 Identities=16% Similarity=0.095 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHhHHhhhhheeccccCC-chhhHHHHHHHHHHHhhhh--chHHHHHHHh--------cCCCcc--h
Q psy3302 8 YTICEVLVALGAVIGNSLVIVAFGREKRLRR-RTNYYIVSLAVADLLVGLV--GIPCALLASV--------GLPRHL--Y 74 (123)
Q Consensus 8 ~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~-~~~~~l~~La~sdl~~~~~--~~~~~~~~~~--------~~~~~~--~ 74 (123)
...+--+.+.++.+.|.+-++.+..+++.+- .-.+++..-|+-|++.++. ..|..+.... +.++.+ .
T Consensus 7 h~~~Pk~~~~lsf~~Np~fiyli~~~~~~~~G~Yr~LL~~Fa~fn~~~S~~~~~vp~~vh~yry~F~~fi~dG~F~~~s~ 86 (310)
T PF10319_consen 7 HHYIPKIFGILSFIVNPIFIYLIFTEKKSQFGNYRYLLLFFAIFNLIYSVVDLLVPICVHGYRYAFVVFISDGPFFEKSE 86 (310)
T ss_pred HHHHHHHHHHHHHHHhhhhheeEEcccccccccHHHHHHHHHHHHHHHHHHHHHhhheeeccceEEEEEEcCCcCcCcch
Confidence 3344556788899999999999988887655 5577888899999998776 3444433322 111111 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccce
Q psy3302 75 ACLFTISLLVVLCTISIFCLVAVSVDRYWAILFPMGYARNV 115 (123)
Q Consensus 75 ~C~~~~~~~~~~~~~s~~~l~~ia~~R~~~v~~p~~~~~~~ 115 (123)
.-.........+...|-..+..==+.||+++++|-..++..
T Consensus 87 l~~~~ls~RCsfIs~sYaIL~~HFvYRYl~l~~~~~~~~~F 127 (310)
T PF10319_consen 87 LGQHLLSIRCSFISGSYAILHIHFVYRYLVLFNSKFINKYF 127 (310)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCcHHHHHhh
Confidence 22222223333333444445555689999999985544443
No 30
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class xa (Srxa), from the Str superfamily [].
Probab=82.10 E-value=0.49 Score=30.16 Aligned_cols=40 Identities=20% Similarity=0.321 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccceeeeee
Q psy3302 81 SLLVVLCTISIFCLVAVSVDRYWAILFPMGYARNVTTKIA 120 (123)
Q Consensus 81 ~~~~~~~~~s~~~l~~ia~~R~~~v~~p~~~~~~~~~~~~ 120 (123)
...+++.....+.-+.|++||-..|.+|.+...+.+.+|.
T Consensus 49 L~~tf~Yl~plfltvLMti~Ri~iV~~P~~~~~~Fs~~kl 88 (153)
T PF03383_consen 49 LFGTFSYLHPLFLTVLMTINRIYIVLFPFGSEIWFSDKKL 88 (153)
T ss_pred eeehHHHHHHHHHHHHHHHhheEEEEecCCCccccccchh
Confidence 4666778888889999999999999999988777777664
No 31
>KOG4193|consensus
Probab=75.15 E-value=39 Score=26.69 Aligned_cols=88 Identities=13% Similarity=0.122 Sum_probs=53.1
Q ss_pred HHHHHHHhHHhhhhheeccccCCchhhHHHHHHHHHHHhhhhchHHHHHHHhcCCCcc-h-hHHHHHHHHHHHHHHHHHH
Q psy3302 16 ALGAVIGNSLVIVAFGREKRLRRRTNYYIVSLAVADLLVGLVGIPCALLASVGLPRHL-Y-ACLFTISLLVVLCTISIFC 93 (123)
Q Consensus 16 ~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~La~sdl~~~~~~~~~~~~~~~~~~~~~-~-~C~~~~~~~~~~~~~s~~~ 93 (123)
+.+++++=.+.+.+...-+++++-.+....||++|=++. ....-...+..+. . .|+...++..++..++.+-
T Consensus 330 ~~iSlvcL~lti~ty~~~~~l~~~~~~i~~~l~~~L~l~------~l~fL~~~~~~~~~~~~C~~~a~llhff~LaaF~W 403 (610)
T KOG4193|consen 330 CIISLVCLLLTIATYLLFRKLQNDRTKIHINLCLCLFLA------ELLFLLGIDRTSTSVVLCIAAAILLHFFFLAAFFW 403 (610)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH------HHHHhcccccccCcccccHHHHHHHHHHHHHHHHH
Confidence 333333333334343344445554477777888772221 1111111122222 2 7999999999999999999
Q ss_pred HHHHHHHHHHHhHhhc
Q psy3302 94 LVAVSVDRYWAILFPM 109 (123)
Q Consensus 94 l~~ia~~R~~~v~~p~ 109 (123)
+..++++=|..++.-.
T Consensus 404 m~leg~hl~~~~v~vf 419 (610)
T KOG4193|consen 404 MLLEGFHLYLLLVEVF 419 (610)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999998666544
No 32
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans. The function of this family is unknown.
Probab=74.45 E-value=3.3 Score=27.89 Aligned_cols=98 Identities=16% Similarity=0.184 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHhHHhhhhheeccccC---CchhhHHHHHHHHHHHhhhhchHHHHHHHh----cC--CC---cchhH
Q psy3302 9 TICEVLVALGAVIGNSLVIVAFGREKRLR---RRTNYYIVSLAVADLLVGLVGIPCALLASV----GL--PR---HLYAC 76 (123)
Q Consensus 9 ~~~~~~~~~~g~~~N~~vl~~i~~~~~l~---~~~~~~l~~La~sdl~~~~~~~~~~~~~~~----~~--~~---~~~~C 76 (123)
...-+++-..+.+.+......+.+++++- +++-. .+.+..-+...|..+...+ -| +. ....|
T Consensus 44 i~~e~~v~~~s~~~s~~L~ifi~~rk~l~~~~ksTIv------FaT~g~fvLtlP~~lf~~wl~~~l~~~~ep~ytI~vC 117 (226)
T PF06681_consen 44 ITVEFIVNTVSWLFSYFLCIFIWRRKNLIRSYKSTIV------FATFGQFVLTLPLYLFQTWLVFFLWFGHEPQYTIFVC 117 (226)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhHHHHHhhcCeEE------EeeHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEee
Confidence 45556677778888877776666665531 12211 1223333345666555443 12 22 22568
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccc
Q psy3302 77 LFTISLLVVLCTISIFCLVAVSVDRYWAILFPMGYA 112 (123)
Q Consensus 77 ~~~~~~~~~~~~~s~~~l~~ia~~R~~~v~~p~~~~ 112 (123)
.+.--+...........-+++|++||..|+...|-.
T Consensus 118 Sflk~f~S~t~s~~~vip~aVAIyRy~~VV~k~rl~ 153 (226)
T PF06681_consen 118 SFLKNFTSSTTSCAQVIPVAVAIYRYLIVVLKKRLS 153 (226)
T ss_pred hHHHhHHHHHhhhhccchhhhhhhhhheeeecccCC
Confidence 766554444445555566689999999988765543
No 33
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity.
Probab=72.76 E-value=31 Score=24.50 Aligned_cols=96 Identities=9% Similarity=0.223 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHhHHhh-hhheeccccCC-chhhHHHHHHHHHHHhhhh----chHHHHHHHh-cCCCcchhHHHHHHH
Q psy3302 10 ICEVLVALGAVIGNSLVI-VAFGREKRLRR-RTNYYIVSLAVADLLVGLV----GIPCALLASV-GLPRHLYACLFTISL 82 (123)
Q Consensus 10 ~~~~~~~~~g~~~N~~vl-~~i~~~~~l~~-~~~~~l~~La~sdl~~~~~----~~~~~~~~~~-~~~~~~~~C~~~~~~ 82 (123)
..+.+..+.+.+.++..+ ..+...++.|+ +..+++..|-+|-...+.. ..|-.+.... .....+..=.+....
T Consensus 17 ~~Fv~st~~stlLt~~Flv~~i~lW~~Fk~m~ffwFl~qlt~s~fi~S~lNl~inVPatlfsl~t~~~~~s~~f~~~Sy~ 96 (305)
T PF04789_consen 17 SLFVLSTIASTLLTGAFLVLSIILWSHFKPMKFFWFLTQLTISVFIISSLNLLINVPATLFSLITKEFVQSELFIFMSYL 96 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhheEeCcHHHHHhhhHHHhccchhhHHHHH
Confidence 334444445555554433 22334455555 7899999999888776543 3555553333 222233344555667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy3302 83 LVVLCTISIFCLVAVSVDRYWAI 105 (123)
Q Consensus 83 ~~~~~~~s~~~l~~ia~~R~~~v 105 (123)
..++.++-.++-..+|++|....
T Consensus 97 idf~h~siLfsNlviaIqR~fVF 119 (305)
T PF04789_consen 97 IDFCHYSILFSNLVIAIQRFFVF 119 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhheee
Confidence 77888888999999999996433
No 34
>PF09882 DUF2109: Predicted membrane protein (DUF2109); InterPro: IPR019214 This entry is found in various hypothetical archaeal proteins and has no known function.
Probab=61.65 E-value=23 Score=19.89 Aligned_cols=48 Identities=19% Similarity=0.269 Sum_probs=33.8
Q ss_pred HHHHHHHhHHhhhhheeccccCCchhhHHHHHHHHHHHhhhhchHHHH
Q psy3302 16 ALGAVIGNSLVIVAFGREKRLRRRTNYYIVSLAVADLLVGLVGIPCAL 63 (123)
Q Consensus 16 ~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~La~sdl~~~~~~~~~~~ 63 (123)
...|.++=...+-++..+++.++-.++-..|-|++.+.....--|+..
T Consensus 4 ~i~g~Iai~~~iR~~~~~~r~~KL~yLnv~~F~iaalIaL~i~~P~g~ 51 (78)
T PF09882_consen 4 IIIGIIAILMAIRIFLTKSRARKLLYLNVINFAIAALIALYIKSPMGA 51 (78)
T ss_pred HHHHHHHHHHHHHHHHhHhHHHhhhHHHHHHHHHHHHHHHHhCCcHHH
Confidence 345556655566666666677888899999999998887666555543
No 35
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=59.31 E-value=63 Score=23.10 Aligned_cols=72 Identities=18% Similarity=0.110 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHhHHhhhhheeccccCCchhhHHHHHH-HHHHHhhhhchHHHHHHH-hcCCCcchhHHHHHHHH
Q psy3302 10 ICEVLVALGAVIGNSLVIVAFGREKRLRRRTNYYIVSLA-VADLLVGLVGIPCALLAS-VGLPRHLYACLFTISLL 83 (123)
Q Consensus 10 ~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~La-~sdl~~~~~~~~~~~~~~-~~~~~~~~~C~~~~~~~ 83 (123)
..++.+.++|++.|....+.+.+.++ +..|.=-..|- ++|.+..+..+.-.+... .+|.+.|....+...+.
T Consensus 125 ~~ml~va~~GL~vN~~~a~ll~~~~~--~~lN~r~a~LHvl~D~Lgsv~vIia~i~i~~~~w~~~Dpi~si~i~~l 198 (296)
T COG1230 125 SGMLVVAIIGLVVNLVSALLLHKGHE--ENLNMRGAYLHVLGDALGSVGVIIAAIVIRFTGWSWLDPILSIVIALL 198 (296)
T ss_pred cchHHHHHHHHHHHHHHHHHhhCCCc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccchHHHHHHHHH
Confidence 45778899999999999888877622 12232223333 369988766555444433 47777777665544433
No 36
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].
Probab=57.95 E-value=61 Score=22.55 Aligned_cols=103 Identities=14% Similarity=0.179 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHhHHhhhhheec-cccCCchhhHHHHH----HHHHHHhhhhchHHHHHHHh-----cCCC-cchhH
Q psy3302 8 YTICEVLVALGAVIGNSLVIVAFGRE-KRLRRRTNYYIVSL----AVADLLVGLVGIPCALLASV-----GLPR-HLYAC 76 (123)
Q Consensus 8 ~~~~~~~~~~~g~~~N~~vl~~i~~~-~~l~~~~~~~l~~L----a~sdl~~~~~~~~~~~~~~~-----~~~~-~~~~C 76 (123)
+....=++..++++-|....+++.++ ++.-++....+.++ .+.|+..+....|....-.. +... ..-..
T Consensus 6 ~~~~~h~~~~i~~Pi~~~~~y~Il~ktp~~m~~~k~~ll~~~~~~~~~d~~~~~l~~P~~~~P~~~~~~~G~l~~~gv~~ 85 (302)
T PF10318_consen 6 YSIVLHIITIISIPIYIFGFYCILFKTPKSMKSVKWYLLNHHFWNFLLDLYLSFLIIPYFFFPSPAGYPLGILSYFGVPT 85 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeEeChhhhHHHHHHHHHHHHHHHHHHHHhhhEEeeeeccchHHhhCCcchhhcccCh
Confidence 44556677888999999999877665 32223344444443 34677777776665443322 1100 11234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcc
Q psy3302 77 LFTISLLVVLCTISIFCLVAVSVDRYWAILFPMG 110 (123)
Q Consensus 77 ~~~~~~~~~~~~~s~~~l~~ia~~R~~~v~~p~~ 110 (123)
.....+..........+...+--+|+.++..+-+
T Consensus 86 ~~q~~i~~~~~~~~~~S~~~lFe~R~~~i~~~~~ 119 (302)
T PF10318_consen 86 PIQFYIGVTLLAFVGVSILSLFENRYQIIIRNRS 119 (302)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccc
Confidence 4555566666666777778888999999986533
No 37
>PF03125 Sre: C. elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=48.61 E-value=1e+02 Score=22.39 Aligned_cols=37 Identities=27% Similarity=0.439 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccc
Q psy3302 78 FTISLLVVLCTISIFCLVAVSVDRYWAILFPMGYARN 114 (123)
Q Consensus 78 ~~~~~~~~~~~~s~~~l~~ia~~R~~~v~~p~~~~~~ 114 (123)
+.+++....+......+.++++||..|-...-.|-++
T Consensus 125 ~~~~l~~~y~~~~~~~~~~~~iER~~AT~~i~dYEk~ 161 (365)
T PF03125_consen 125 IGGFLRWHYMFSAIFCLLAIVIERCFATYFIKDYEKK 161 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344555556667889999999999999887666654
No 38
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=32.37 E-value=75 Score=16.57 Aligned_cols=18 Identities=28% Similarity=0.560 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHhHHhh
Q psy3302 10 ICEVLVALGAVIGNSLVI 27 (123)
Q Consensus 10 ~~~~~~~~~g~~~N~~vl 27 (123)
.+..++.+..++||+.++
T Consensus 6 wlIIviVlgvIigNia~L 23 (55)
T PF11446_consen 6 WLIIVIVLGVIIGNIAAL 23 (55)
T ss_pred hHHHHHHHHHHHhHHHHH
Confidence 344455566678897766
No 39
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=32.34 E-value=2e+02 Score=20.91 Aligned_cols=36 Identities=11% Similarity=0.161 Sum_probs=31.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy3302 73 LYACLFTISLLVVLCTISIFCLVAVSVDRYWAILFP 108 (123)
Q Consensus 73 ~~~C~~~~~~~~~~~~~s~~~l~~ia~~R~~~v~~p 108 (123)
+..|.+...+.++++.++..-.+.+++.-|++....
T Consensus 91 ~~~C~~~F~l~Yyf~mAa~~WWviLt~~W~lsa~~k 126 (328)
T PF01534_consen 91 NSSCTVVFLLLYYFGMAASLWWVILTLTWFLSAGLK 126 (328)
T ss_pred CCchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc
Confidence 477999999999999999999999999998887653
No 40
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=29.64 E-value=1.2e+02 Score=17.93 Aligned_cols=23 Identities=4% Similarity=-0.005 Sum_probs=16.4
Q ss_pred CCCchhHHHHHHHHHHHHHHHhH
Q psy3302 2 DALNVPYTICEVLVALGAVIGNS 24 (123)
Q Consensus 2 ~~~~~~~~~~~~~~~~~g~~~N~ 24 (123)
+.|+++++.+..++..+|++.-+
T Consensus 16 ~PWeIfLItLasVvvavGl~aGL 38 (106)
T PF14654_consen 16 KPWEIFLITLASVVVAVGLFAGL 38 (106)
T ss_pred cchHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777776653
No 41
>PF10852 DUF2651: Protein of unknown function (DUF2651) ; InterPro: IPR020258 This entry contains transmembrane proteins with no known function.
Probab=27.65 E-value=91 Score=17.74 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=17.6
Q ss_pred CCCCchhHHHHHHHHHHHHHHHh
Q psy3302 1 MDALNVPYTICEVLVALGAVIGN 23 (123)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~g~~~N 23 (123)
||+....+..+-..+.+.|++|-
T Consensus 1 m~el~fvlfi~Plli~i~sI~Gt 23 (82)
T PF10852_consen 1 MDELIFVLFILPLLIIIISIIGT 23 (82)
T ss_pred CccchhHHHHhhHHHHHHHHHHh
Confidence 67777777777777888888874
No 42
>KOG1172|consensus
Probab=22.12 E-value=2.7e+02 Score=23.29 Aligned_cols=41 Identities=17% Similarity=0.440 Sum_probs=31.1
Q ss_pred hHHhhhhheeccccCCch--hhHHHHHHHHHHHhhhhchHHHH
Q psy3302 23 NSLVIVAFGREKRLRRRT--NYYIVSLAVADLLVGLVGIPCAL 63 (123)
Q Consensus 23 N~~vl~~i~~~~~l~~~~--~~~l~~La~sdl~~~~~~~~~~~ 63 (123)
|+....+-.+.+++|+++ ++=+.-+++...+.+++++|..-
T Consensus 649 qIts~iv~rke~kLKKgsgyH~DLlllgil~~icsllGLPw~~ 691 (876)
T KOG1172|consen 649 QITAVIVNRKENKLKKGSGYHLDLLLLGILTLICSLLGLPWSN 691 (876)
T ss_pred hHHHHHhhcccccCCCCcchhHHHHHHHHHHHHHHhcCCCccc
Confidence 777777777888898865 55566677888888888888753
No 43
>PRK13716 leader peptide RepL; Provisional
Probab=22.02 E-value=54 Score=13.89 Aligned_cols=17 Identities=12% Similarity=0.356 Sum_probs=10.7
Q ss_pred CchhhHHHHHHHHHHHh
Q psy3302 38 RRTNYYIVSLAVADLLV 54 (123)
Q Consensus 38 ~~~~~~l~~La~sdl~~ 54 (123)
+..++|+++|-.+++..
T Consensus 4 kvqd~flcsll~~~isa 20 (26)
T PRK13716 4 KVQDFFLCSLLLRIVSA 20 (26)
T ss_pred chhhhhhhhhhhhhccc
Confidence 45677777776666443
No 44
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=20.57 E-value=1.1e+02 Score=22.42 Aligned_cols=29 Identities=17% Similarity=0.164 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHhHHhhhhheecccc
Q psy3302 8 YTICEVLVALGAVIGNSLVIVAFGREKRL 36 (123)
Q Consensus 8 ~~~~~~~~~~~g~~~N~~vl~~i~~~~~l 36 (123)
..+..+++.++.++.-.++++.+.|-||.
T Consensus 310 t~IiaSiIAIvvIVLIMvIIYLILRYRRK 338 (353)
T TIGR01477 310 TPIIASIIAILIIVLIMVIIYLILRYRRK 338 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 45677888888888888888887766543
Done!