Query psy3302
Match_columns 123
No_of_seqs 112 out of 1243
Neff 9.8
Searched_HMMs 29240
Date Fri Aug 16 21:33:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3302.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3302hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lnl_A C-X-C chemokine recepto 99.9 3.2E-24 1.1E-28 146.8 10.9 111 6-117 12-123 (296)
2 4grv_A Neurotensin receptor ty 99.9 5.1E-24 1.7E-28 155.9 11.3 116 6-121 33-155 (510)
3 2rh1_A Beta-2-adrenergic recep 99.9 1.8E-23 6.3E-28 152.4 10.3 116 5-120 40-157 (500)
4 4amj_A Beta-1 adrenergic recep 99.9 1.2E-23 4.1E-28 143.9 8.2 117 4-120 10-128 (315)
5 3eml_A Human adenosine A2A rec 99.9 3.6E-23 1.2E-27 149.1 10.9 117 4-120 20-136 (488)
6 3uon_A Human M2 muscarinic ace 99.9 6.3E-23 2.2E-27 147.3 11.7 116 5-120 23-140 (467)
7 3rze_A Histamine H1 receptor, 99.9 3.5E-23 1.2E-27 148.1 9.9 117 4-120 7-125 (452)
8 4eiy_A Adenosine receptor A2A/ 99.9 4E-23 1.4E-27 147.6 9.1 115 6-120 32-146 (447)
9 3vw7_A Proteinase-activated re 99.9 9.5E-23 3.3E-27 147.0 10.5 116 5-120 20-137 (484)
10 4dkl_A MU-type opioid receptor 99.9 1.1E-22 3.8E-27 145.7 10.2 115 5-120 17-133 (464)
11 3odu_A C-X-C chemokine recepto 99.9 1.1E-22 3.8E-27 147.2 9.9 115 5-120 48-163 (502)
12 3v2y_A Sphingosine 1-phosphate 99.9 2.9E-22 9.9E-27 146.8 10.3 114 6-120 64-178 (520)
13 3sn6_R Lysozyme, beta-2 adrene 99.9 2.5E-22 8.7E-27 146.7 9.6 115 6-120 183-299 (514)
14 1u19_A Rhodopsin; G protein-co 99.9 6E-22 2E-26 137.4 10.9 112 7-119 40-153 (349)
15 4ea3_A Fusion protein of nocic 99.9 7.6E-22 2.6E-26 141.5 10.6 114 6-120 126-241 (434)
16 2ks9_A Substance-P receptor; w 99.9 1.4E-21 4.7E-26 136.7 11.3 106 8-113 35-142 (364)
17 3pbl_A D(3) dopamine receptor, 99.9 4.4E-22 1.5E-26 143.5 8.6 114 6-119 39-158 (481)
18 2z73_A Rhodopsin; visual pigme 99.9 2.7E-21 9.3E-26 138.8 10.9 114 7-120 36-152 (448)
19 1hll_A Alpha-2A adrenergic rec 99.1 5.8E-11 2E-15 55.3 2.8 31 89-119 2-32 (32)
20 2lot_A Apelin receptor; membra 94.7 0.0014 4.7E-08 34.8 -2.4 29 7-35 30-58 (64)
No 1
>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}
Probab=99.91 E-value=3.2e-24 Score=146.77 Aligned_cols=111 Identities=30% Similarity=0.331 Sum_probs=98.7
Q ss_pred hhHHHHHHHHHHHHHHHhHHhhhhheeccccCCchhhHHHHHHHHHHHhhhhchHHHHH-HHhcCCCcchhHHHHHHHHH
Q psy3302 6 VPYTICEVLVALGAVIGNSLVIVAFGREKRLRRRTNYYIVSLAVADLLVGLVGIPCALL-ASVGLPRHLYACLFTISLLV 84 (123)
Q Consensus 6 ~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~La~sdl~~~~~~~~~~~~-~~~~~~~~~~~C~~~~~~~~ 84 (123)
.+..++|.++.++|++||.+++.++.+++++|+++|+++.|||++|++.++. .|.... ...+|..++..|+...+...
T Consensus 12 ~i~~i~y~ii~i~gv~gN~lvi~vi~~~~~lrt~~n~~i~nLAvaDll~~l~-~p~~~~~~~~~~~~~~~~c~~~~~~~~ 90 (296)
T 2lnl_A 12 YVVIIAYALVFLLSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFALT-LPIWAASKVNGWIFGTFLCKVVSLLKE 90 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCSTTHHHHHHHHHHHHHHHHH-HHHHHHHHHSSSCCSSHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHh-hhHHHhhccCCCccchhHHHHHhhhhh
Confidence 4667889999999999999999999999999999999999999999998754 454443 33478899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhcccccceee
Q psy3302 85 VLCTISIFCLVAVSVDRYWAILFPMGYARNVTT 117 (123)
Q Consensus 85 ~~~~~s~~~l~~ia~~R~~~v~~p~~~~~~~~~ 117 (123)
.+..+|.+++++||+|||.+|++|++|+...++
T Consensus 91 ~~~~~s~~~l~~isidRy~aI~~P~~~~~~~~~ 123 (296)
T 2lnl_A 91 VNFYSGILLLACISVDRYLAIVHATRTLTQKRH 123 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSCSSSSCCHHH
T ss_pred hhHHHHHHHHHHHHhhhhhhhhhccccchhhhh
Confidence 999999999999999999999999999886654
No 2
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}
Probab=99.91 E-value=5.1e-24 Score=155.86 Aligned_cols=116 Identities=23% Similarity=0.272 Sum_probs=101.6
Q ss_pred hhHHHHHHHHHHHHHHHhHHhhhhheeccccC---CchhhHHHHHHHHHHHhhhhchHHHHHHHh----cCCCcchhHHH
Q psy3302 6 VPYTICEVLVALGAVIGNSLVIVAFGREKRLR---RRTNYYIVSLAVADLLVGLVGIPCALLASV----GLPRHLYACLF 78 (123)
Q Consensus 6 ~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~---~~~~~~l~~La~sdl~~~~~~~~~~~~~~~----~~~~~~~~C~~ 78 (123)
++..++|.+++++|++||+++++++.+++++| +++|+++.|||++|++.+++.+|..+.... .|.+++..|++
T Consensus 33 v~~~~~~~~i~~~g~~gN~lvi~~i~~~~~~r~~~~~~n~~i~~La~aDll~~~~~~p~~~~~~~~~~~~w~~g~~~C~~ 112 (510)
T 4grv_A 33 VLVTAIYLALFVVGTVGNSVTLFTLARKKSLQSLQSTVHYHLGSLALSDLLILLLAMPVELYNFIWVHHPWAFGDAGCRG 112 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSSCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhheeeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEhhHHHHHH
Confidence 45678899999999999999999998876554 678999999999999999999998877653 47888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccceeeeeee
Q psy3302 79 TISLLVVLCTISIFCLVAVSVDRYWAILFPMGYARNVTTKIAV 121 (123)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~ia~~R~~~v~~p~~~~~~~~~~~~~ 121 (123)
..++...+..+|++++++||+|||+||++|++|++.++++++.
T Consensus 113 ~~~~~~~~~~~S~~~l~~is~dRy~ai~~P~~~~~~~t~~~~~ 155 (510)
T 4grv_A 113 YYFLRDACTYATALNVASLSVARYLAICHPFKAKTLMSRSRTK 155 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCCCCCSCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheEEEeccccccccccccccc
Confidence 9999999999999999999999999999999999999988763
No 3
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*
Probab=99.90 E-value=1.8e-23 Score=152.38 Aligned_cols=116 Identities=38% Similarity=0.491 Sum_probs=105.2
Q ss_pred chhHHHHHHHHHHHHHHHhHHhhhhheeccccCCchhhHHHHHHHHHHHhhhhchHHHHHHHh--cCCCcchhHHHHHHH
Q psy3302 5 NVPYTICEVLVALGAVIGNSLVIVAFGREKRLRRRTNYYIVSLAVADLLVGLVGIPCALLASV--GLPRHLYACLFTISL 82 (123)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~La~sdl~~~~~~~~~~~~~~~--~~~~~~~~C~~~~~~ 82 (123)
.....+++.++.++|++||+++++++.+++++|+++++++.|||++|++.++..+|..+.... .|..++..|++..++
T Consensus 40 ~~~~~~~~~~i~~~gi~gN~lvi~~i~~~~~l~~~~~~~l~nLAiaDll~~~~~~p~~~~~~~~~~w~~~~~~C~~~~~~ 119 (500)
T 2rh1_A 40 VVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSI 119 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCcchhhHHHHH
Confidence 345678899999999999999999999999999999999999999999999888888776554 688889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhcccccceeeeee
Q psy3302 83 LVVLCTISIFCLVAVSVDRYWAILFPMGYARNVTTKIA 120 (123)
Q Consensus 83 ~~~~~~~s~~~l~~ia~~R~~~v~~p~~~~~~~~~~~~ 120 (123)
...+..+|++++++||+|||+||++|++|+++++++++
T Consensus 120 ~~~~~~~Si~~l~~isidRy~aI~~Pl~~~~~~t~~~~ 157 (500)
T 2rh1_A 120 DVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKA 157 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSTTSCSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHeeccCcCCeeecccce
Confidence 99999999999999999999999999999988887654
No 4
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*
Probab=99.89 E-value=1.2e-23 Score=143.91 Aligned_cols=117 Identities=38% Similarity=0.467 Sum_probs=105.9
Q ss_pred CchhHHHHHHHHHHHHHHHhHHhhhhheeccccCCchhhHHHHHHHHHHHhhhhchHHHHHHHh--cCCCcchhHHHHHH
Q psy3302 4 LNVPYTICEVLVALGAVIGNSLVIVAFGREKRLRRRTNYYIVSLAVADLLVGLVGIPCALLASV--GLPRHLYACLFTIS 81 (123)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~La~sdl~~~~~~~~~~~~~~~--~~~~~~~~C~~~~~ 81 (123)
.+.....++.++.++|++||.+++.++.+++++|++.++++.|||++|++.++...|..+.... .|..++..|++..+
T Consensus 10 ~~~~~~~~~~~~~~~gi~gN~lvi~~i~~~~~~~~~~~~ll~~LaiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~ 89 (315)
T 4amj_A 10 WEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTS 89 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHSSCCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhhchhhcchHHHHHHHHHHHHHHHHHHhccHHHHHHhcCCeeccccHHHHHHH
Confidence 3456778899999999999999999999999999999999999999999999888888766554 68888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhcccccceeeeee
Q psy3302 82 LLVVLCTISIFCLVAVSVDRYWAILFPMGYARNVTTKIA 120 (123)
Q Consensus 82 ~~~~~~~~s~~~l~~ia~~R~~~v~~p~~~~~~~~~~~~ 120 (123)
+...+..+|.++++++|+|||++|++|++|++..+++++
T Consensus 90 ~~~~~~~~S~~~l~~isidRy~aI~~P~~~~~~~~~~~~ 128 (315)
T 4amj_A 90 LDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARA 128 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhH
Confidence 999999999999999999999999999999988877654
No 5
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=99.89 E-value=3.6e-23 Score=149.10 Aligned_cols=117 Identities=39% Similarity=0.580 Sum_probs=108.1
Q ss_pred CchhHHHHHHHHHHHHHHHhHHhhhhheeccccCCchhhHHHHHHHHHHHhhhhchHHHHHHHhcCCCcchhHHHHHHHH
Q psy3302 4 LNVPYTICEVLVALGAVIGNSLVIVAFGREKRLRRRTNYYIVSLAVADLLVGLVGIPCALLASVGLPRHLYACLFTISLL 83 (123)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~La~sdl~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~ 83 (123)
...+..+++.+++++|++||++++.++.+++++|++.++++.|||++|++.++...|..+.....|..++..|++..++.
T Consensus 20 ~~~~~~~~~~~i~~~gi~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~C~~~~~~~ 99 (488)
T 3eml_A 20 GSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITISTGFCAACHGCLFIACFV 99 (488)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSSHHHHHHHHHHHHHHHHHTHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHhhhheeeccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 34677889999999999999999999999999999999999999999999999999988877777888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhcccccceeeeee
Q psy3302 84 VVLCTISIFCLVAVSVDRYWAILFPMGYARNVTTKIA 120 (123)
Q Consensus 84 ~~~~~~s~~~l~~ia~~R~~~v~~p~~~~~~~~~~~~ 120 (123)
..+..+|++++++||+|||++|++|++|++.++++++
T Consensus 100 ~~~~~~s~~~l~~is~dRy~aI~~P~~~~~~~~~~~~ 136 (488)
T 3eml_A 100 LVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRA 136 (488)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCGGGSTTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhheeEecccccccccCHHHH
Confidence 9999999999999999999999999999998887764
No 6
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Probab=99.89 E-value=6.3e-23 Score=147.25 Aligned_cols=116 Identities=31% Similarity=0.472 Sum_probs=106.2
Q ss_pred chhHHHHHHHHHHHHHHHhHHhhhhheeccccCCchhhHHHHHHHHHHHhhhhchHHHHHHHh--cCCCcchhHHHHHHH
Q psy3302 5 NVPYTICEVLVALGAVIGNSLVIVAFGREKRLRRRTNYYIVSLAVADLLVGLVGIPCALLASV--GLPRHLYACLFTISL 82 (123)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~La~sdl~~~~~~~~~~~~~~~--~~~~~~~~C~~~~~~ 82 (123)
.....+++.+++++|++||+++++++.+++++|++.++++.|||++|++.++...|..+.... .|..++..|++..++
T Consensus 23 ~~~~~~~~~~~~~~g~~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~ 102 (467)
T 3uon_A 23 VVFIVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVCDLWLAL 102 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeeeeecCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcchHhHHHHH
Confidence 356778899999999999999999999999999999999999999999999888888776665 578889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhcccccceeeeee
Q psy3302 83 LVVLCTISIFCLVAVSVDRYWAILFPMGYARNVTTKIA 120 (123)
Q Consensus 83 ~~~~~~~s~~~l~~ia~~R~~~v~~p~~~~~~~~~~~~ 120 (123)
...+..+|.+++++||+|||++|++|++|++.++++++
T Consensus 103 ~~~~~~~s~~~l~~isidRy~ai~~P~~~~~~~~~~~~ 140 (467)
T 3uon_A 103 DYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTKMA 140 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTTSGGGCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccccccchhHH
Confidence 99999999999999999999999999999998887764
No 7
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Probab=99.89 E-value=3.5e-23 Score=148.08 Aligned_cols=117 Identities=34% Similarity=0.449 Sum_probs=106.1
Q ss_pred CchhHHHHHHHHHHHHHHHhHHhhhhheeccccCCchhhHHHHHHHHHHHhhhhchHHHHHHHh--cCCCcchhHHHHHH
Q psy3302 4 LNVPYTICEVLVALGAVIGNSLVIVAFGREKRLRRRTNYYIVSLAVADLLVGLVGIPCALLASV--GLPRHLYACLFTIS 81 (123)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~La~sdl~~~~~~~~~~~~~~~--~~~~~~~~C~~~~~ 81 (123)
......+++.+++++|++||+++++++.+++++|++.++++.|||++|++.++...|..+.... .|..++..|++..+
T Consensus 7 ~~~~~~~~~~~~~~~gi~gN~~vi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~ 86 (452)
T 3rze_A 7 QLMPLVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSKWSLGRPLCLFWLS 86 (452)
T ss_dssp --CGGGTHHHHHHHHHHHHHHHHHHHHHHCSTTCCGGGHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCchhHhHHHH
Confidence 4456778899999999999999999999999999999999999999999999888898877665 67788899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhcccccceeeeee
Q psy3302 82 LLVVLCTISIFCLVAVSVDRYWAILFPMGYARNVTTKIA 120 (123)
Q Consensus 82 ~~~~~~~~s~~~l~~ia~~R~~~v~~p~~~~~~~~~~~~ 120 (123)
+..++..+|.+++++||+|||++|++|++|+++++++++
T Consensus 87 ~~~~~~~~s~~~l~~is~dRy~aI~~P~~~~~~~~~~~~ 125 (452)
T 3rze_A 87 MDYVASTASIFSVFILCIDRYRSVQQPLRYLKYRTKTRA 125 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSCCTTTTSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheeCccccccccchhHH
Confidence 999999999999999999999999999999998887654
No 8
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Probab=99.89 E-value=4e-23 Score=147.58 Aligned_cols=115 Identities=40% Similarity=0.600 Sum_probs=106.0
Q ss_pred hhHHHHHHHHHHHHHHHhHHhhhhheeccccCCchhhHHHHHHHHHHHhhhhchHHHHHHHhcCCCcchhHHHHHHHHHH
Q psy3302 6 VPYTICEVLVALGAVIGNSLVIVAFGREKRLRRRTNYYIVSLAVADLLVGLVGIPCALLASVGLPRHLYACLFTISLLVV 85 (123)
Q Consensus 6 ~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~La~sdl~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~ 85 (123)
.+..+++.+++++|++||++++.++.+++++|+++++++.|||++|++.++...|..+.....|..++..|++..++...
T Consensus 32 ~~~~~i~~~i~~~gi~gN~~vl~~~~~~~~l~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~C~~~~~~~~~ 111 (447)
T 4eiy_A 32 SVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITISTGFCAACHGCLFIACFVLV 111 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCEEEHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999899998887777777788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhcccccceeeeee
Q psy3302 86 LCTISIFCLVAVSVDRYWAILFPMGYARNVTTKIA 120 (123)
Q Consensus 86 ~~~~s~~~l~~ia~~R~~~v~~p~~~~~~~~~~~~ 120 (123)
+..+|.+++++||+|||++|++|++|+++++++++
T Consensus 112 ~~~~S~~~l~~is~dRy~aI~~P~~~~~~~~~~~~ 146 (447)
T 4eiy_A 112 LTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRA 146 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHeEEecccccchhhhHHHH
Confidence 99999999999999999999999999988887654
No 9
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}
Probab=99.89 E-value=9.5e-23 Score=147.04 Aligned_cols=116 Identities=21% Similarity=0.159 Sum_probs=97.0
Q ss_pred chhHHHHHHHHHHHHHHHhHHhhhhheeccccCCchhhHHHHHHHHHHHhhhhchHHHHHHHh--cCCCcchhHHHHHHH
Q psy3302 5 NVPYTICEVLVALGAVIGNSLVIVAFGREKRLRRRTNYYIVSLAVADLLVGLVGIPCALLASV--GLPRHLYACLFTISL 82 (123)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~La~sdl~~~~~~~~~~~~~~~--~~~~~~~~C~~~~~~ 82 (123)
+.+..+++.+++++|++||+++++++.+++++|+++++++.|||++|++.++...+....... .|..++..|++..++
T Consensus 20 ~~~~~~~~~~i~~~~i~gN~lvi~~~~~~~~l~~~~~~~l~~La~aDll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~ 99 (484)
T 3vw7_A 20 TLFVPSVYTGVFVVSLPLNIMAIVVFILKMKVKKPAVVYMLHLATADVLFVSVLPFKISYYFSGSDWQFGSELCRFVTAA 99 (484)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHTTHHHHHHHHHTTSCCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhHHhHHHHH
Confidence 456778899999999999999999999999999999999999999999997654333333333 588889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhcccccceeeeee
Q psy3302 83 LVVLCTISIFCLVAVSVDRYWAILFPMGYARNVTTKIA 120 (123)
Q Consensus 83 ~~~~~~~s~~~l~~ia~~R~~~v~~p~~~~~~~~~~~~ 120 (123)
...+..+|++++++||+|||+||++|++|++.++++++
T Consensus 100 ~~~~~~~S~~~l~~is~dRy~aI~~P~~~~~~~t~~~~ 137 (484)
T 3vw7_A 100 FYCNMYASILLMTVISIDRFLAVVYPMQSLSWRTLGRA 137 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHheEEEcccccccccchhHH
Confidence 99999999999999999999999999999988887654
No 10
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*
Probab=99.88 E-value=1.1e-22 Score=145.72 Aligned_cols=115 Identities=29% Similarity=0.351 Sum_probs=103.4
Q ss_pred chhHHHHHHHHHHHHHHHhHHhhhhheeccccCCchhhHHHHHHHHHHHhhhhchHHHHHHHh--cCCCcchhHHHHHHH
Q psy3302 5 NVPYTICEVLVALGAVIGNSLVIVAFGREKRLRRRTNYYIVSLAVADLLVGLVGIPCALLASV--GLPRHLYACLFTISL 82 (123)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~La~sdl~~~~~~~~~~~~~~~--~~~~~~~~C~~~~~~ 82 (123)
+....+++.+++++|++||++++.++.+++++|+++++++.|||++|++.++. .|..+.... .|..++..|++..++
T Consensus 17 ~~~~~~~~~~~~~~gi~gN~lvi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~-~p~~~~~~~~~~~~~~~~~C~~~~~~ 95 (464)
T 4dkl_A 17 AITIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATST-LPFQSVNYLMGTWPFGNILCKIVISI 95 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHSSCCSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHeehhhhhccccCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCcccccchhhhHHHH
Confidence 35677889999999999999999999999999999999999999999998876 777665554 688889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhcccccceeeeee
Q psy3302 83 LVVLCTISIFCLVAVSVDRYWAILFPMGYARNVTTKIA 120 (123)
Q Consensus 83 ~~~~~~~s~~~l~~ia~~R~~~v~~p~~~~~~~~~~~~ 120 (123)
..++..+|.+++++||+|||++|++|++|+++++++++
T Consensus 96 ~~~~~~~s~~~l~~is~dRy~aI~~P~~~~~~~~~~~~ 133 (464)
T 4dkl_A 96 DYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNA 133 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccccccHh
Confidence 99999999999999999999999999999988877654
No 11
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Probab=99.88 E-value=1.1e-22 Score=147.24 Aligned_cols=115 Identities=27% Similarity=0.371 Sum_probs=103.5
Q ss_pred chhHHHHHHHHHHHHHHHhHHhhhhheeccccCCchhhHHHHHHHHHHHhhhhchHHHHHHHh-cCCCcchhHHHHHHHH
Q psy3302 5 NVPYTICEVLVALGAVIGNSLVIVAFGREKRLRRRTNYYIVSLAVADLLVGLVGIPCALLASV-GLPRHLYACLFTISLL 83 (123)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~La~sdl~~~~~~~~~~~~~~~-~~~~~~~~C~~~~~~~ 83 (123)
+.+..+++.+++++|++||+++++++.+++++|+++++++.|||++|++.+ ...|..+.... .|..++..|++..++.
T Consensus 48 ~~~~~~~~~~i~~~g~~gN~lvi~~~~~~~~l~~~~~~~l~~La~~Dll~~-~~~p~~~~~~~~~~~~~~~~C~~~~~~~ 126 (502)
T 3odu_A 48 KIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFV-ITLPFWAVDAVANWYFGNFLCKAVHVIY 126 (502)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHHH-TTHHHHHHHHHTCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCcCCchhhhhHHHHH
Confidence 356778899999999999999999999999999999999999999999995 57777665554 7888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhcccccceeeeee
Q psy3302 84 VVLCTISIFCLVAVSVDRYWAILFPMGYARNVTTKIA 120 (123)
Q Consensus 84 ~~~~~~s~~~l~~ia~~R~~~v~~p~~~~~~~~~~~~ 120 (123)
..+..+|++++++||+|||++|++|++|++.++++++
T Consensus 127 ~~~~~~s~~~l~~is~dRy~ai~~P~~~~~~~~~~~~ 163 (502)
T 3odu_A 127 TVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAE 163 (502)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhheecccccccccchhHH
Confidence 9999999999999999999999999999988887653
No 12
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*
Probab=99.88 E-value=2.9e-22 Score=146.81 Aligned_cols=114 Identities=21% Similarity=0.325 Sum_probs=97.0
Q ss_pred hhHHHHHHHHHHHHHHHhHHhhhhheeccccCCchhhHHHHHHHHHHHhhhhchHHHHHHHh-cCCCcchhHHHHHHHHH
Q psy3302 6 VPYTICEVLVALGAVIGNSLVIVAFGREKRLRRRTNYYIVSLAVADLLVGLVGIPCALLASV-GLPRHLYACLFTISLLV 84 (123)
Q Consensus 6 ~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~La~sdl~~~~~~~~~~~~~~~-~~~~~~~~C~~~~~~~~ 84 (123)
.+..+++.+++++|++||.++++++.+++++|+++++++.|||++|++.++...|..+.... .|..++..|++..++..
T Consensus 64 ~~~~~~~~~i~~~g~~gN~lvi~vi~~~~~lr~~~~~~l~nLA~aDll~~~~~~p~~~~~~~~~~~~~~~~c~~~~~~~~ 143 (520)
T 3v2y_A 64 KLTSVVFILICCFIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANLLLSGATTYKLTPAQWFLREGSMF 143 (520)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGGTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCccccChHHHHHHHHHHHHHHHHHHHHHHHHHccccceeeCccccchHHHHHH
Confidence 45678899999999999999999999999999999999999999999999888887666533 57778899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhcccccceeeeee
Q psy3302 85 VLCTISIFCLVAVSVDRYWAILFPMGYARNVTTKIA 120 (123)
Q Consensus 85 ~~~~~s~~~l~~ia~~R~~~v~~p~~~~~~~~~~~~ 120 (123)
.+..+|++++++||+|||+||+ |++|+..++++++
T Consensus 144 ~~~~~S~~~l~~isidRy~aI~-p~~~~~~~t~~~~ 178 (520)
T 3v2y_A 144 VALSASVFSLLAIAIERYITML-KMKLHNGSNNFRL 178 (520)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-C-------CCHHH
T ss_pred HHHHHHHHHHHHHHHHHhhEEe-ccccccccchhHH
Confidence 9999999999999999999999 9999998888765
No 13
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*
Probab=99.87 E-value=2.5e-22 Score=146.70 Aligned_cols=115 Identities=38% Similarity=0.509 Sum_probs=104.8
Q ss_pred hhHHHHHHHHHHHHHHHhHHhhhhheeccccCCchhhHHHHHHHHHHHhhhhchHHHHHHHh--cCCCcchhHHHHHHHH
Q psy3302 6 VPYTICEVLVALGAVIGNSLVIVAFGREKRLRRRTNYYIVSLAVADLLVGLVGIPCALLASV--GLPRHLYACLFTISLL 83 (123)
Q Consensus 6 ~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~La~sdl~~~~~~~~~~~~~~~--~~~~~~~~C~~~~~~~ 83 (123)
....+++.+++++|++||.+++.++.+++++|++.++++.|||++|++.++...|..+.... .|..++..|++..++.
T Consensus 183 ~~~~i~~~ii~~~gi~gN~lvi~vi~~~~~lr~~~~~ll~nLAiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~l~ 262 (514)
T 3sn6_R 183 VGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSID 262 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHTSCCSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHhhhheecccccccHHHHHHHHHHHHHHHHHHHhCHHHHHHHHcCCeeCCcchhhhHHHHH
Confidence 45678899999999999999999999999999999999999999999999888888776554 5788899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhcccccceeeeee
Q psy3302 84 VVLCTISIFCLVAVSVDRYWAILFPMGYARNVTTKIA 120 (123)
Q Consensus 84 ~~~~~~s~~~l~~ia~~R~~~v~~p~~~~~~~~~~~~ 120 (123)
..+..+|.+++++||+|||++|++|++|+++++++++
T Consensus 263 ~~~~~~S~~~l~~isidRy~aI~~Pl~~~~~~t~~~~ 299 (514)
T 3sn6_R 263 VLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKA 299 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccchhccchHH
Confidence 9999999999999999999999999999988877654
No 14
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...
Probab=99.87 E-value=6e-22 Score=137.44 Aligned_cols=112 Identities=23% Similarity=0.281 Sum_probs=100.3
Q ss_pred hHHHHHHHHHHHHHHHhHHhhhhheeccccCCchhhHHHHHHHHHHHhhhhchHHHHHHHh--cCCCcchhHHHHHHHHH
Q psy3302 7 PYTICEVLVALGAVIGNSLVIVAFGREKRLRRRTNYYIVSLAVADLLVGLVGIPCALLASV--GLPRHLYACLFTISLLV 84 (123)
Q Consensus 7 ~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~La~sdl~~~~~~~~~~~~~~~--~~~~~~~~C~~~~~~~~ 84 (123)
....++.++.++|++||.+++.++.+++++|++.++++.|||++|++.++...|....... .|..++..|+...++..
T Consensus 40 ~~~~~~~~i~~~gi~gN~lvi~~i~~~~~~~~~~~~ll~~Lai~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~ 119 (349)
T 1u19_A 40 MLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFAT 119 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHheEeehhhhhhhcCchhHHHHHHHHHHHHHHHhcchHHHHHHhcCeeeCChhHHHHHHHHHH
Confidence 5667889999999999999999999999999999999999999999999888887765543 57788899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhcccccceeeee
Q psy3302 85 VLCTISIFCLVAVSVDRYWAILFPMGYARNVTTKI 119 (123)
Q Consensus 85 ~~~~~s~~~l~~ia~~R~~~v~~p~~~~~~~~~~~ 119 (123)
.+..+|.+++++||+|||++|++|++|++ .++++
T Consensus 120 ~~~~~s~~~l~~isidRy~aI~~P~~~~~-~~~~~ 153 (349)
T 1u19_A 120 LGGEIALWSLVVLAIERYVVVCKPMSNFR-FGENH 153 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCSSSCC-CCHHH
T ss_pred HHHHHHHHHHHHHHHHHHheeeCCcccee-eccch
Confidence 99999999999999999999999999876 55544
No 15
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR network, structural genomics, GPCR membrane 7TM NOP ORL1 cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo sapiens}
Probab=99.87 E-value=7.6e-22 Score=141.50 Aligned_cols=114 Identities=32% Similarity=0.376 Sum_probs=95.2
Q ss_pred hhHHHHHHHHHHHHHHHhHHhhhhheeccccCCchhhHHHHHHHHHHHhhhhchHHHHHHHh--cCCCcchhHHHHHHHH
Q psy3302 6 VPYTICEVLVALGAVIGNSLVIVAFGREKRLRRRTNYYIVSLAVADLLVGLVGIPCALLASV--GLPRHLYACLFTISLL 83 (123)
Q Consensus 6 ~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~La~sdl~~~~~~~~~~~~~~~--~~~~~~~~C~~~~~~~ 83 (123)
.....++.+++++|++||.+++.++.+++++|+++++++.|||++|++. ....|....... .|..++..|+...++.
T Consensus 126 ~~~~~~~~~i~~~gi~gN~lvi~~i~~~~~l~~~~~~ll~~LAvsDll~-~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~ 204 (434)
T 4ea3_A 126 VTIVGLYLAVCVGGLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLV-LLTLPFQGTDILLGFWPFGNALCKTVIAID 204 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHH-HTTHHHHHHHHHHTSCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHeeeeeeecCccCchhHHHHHHHHHHHHHH-HHHhHHHHHHHHhcCCcCcccHHHHHHHHH
Confidence 4566789999999999999999999999999999999999999999988 456676655544 5778889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhcccccceeeeee
Q psy3302 84 VVLCTISIFCLVAVSVDRYWAILFPMGYARNVTTKIA 120 (123)
Q Consensus 84 ~~~~~~s~~~l~~ia~~R~~~v~~p~~~~~~~~~~~~ 120 (123)
..+..+|.+++++||+|||++|++|++|+++++++++
T Consensus 205 ~~~~~~S~~~l~~isidRy~aI~~Pl~~~~~~t~~~~ 241 (434)
T 4ea3_A 205 YYNMFTSTFTLTAMSVDRYVAICHPIRALDVRTSSKA 241 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhEEEcccccccccchhhh
Confidence 9999999999999999999999999999998887764
No 16
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A
Probab=99.87 E-value=1.4e-21 Score=136.69 Aligned_cols=106 Identities=26% Similarity=0.419 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHHhHHhhhhheeccccCCchhhHHHHHHHHHHHhhhhchHHHHHHHh--cCCCcchhHHHHHHHHHH
Q psy3302 8 YTICEVLVALGAVIGNSLVIVAFGREKRLRRRTNYYIVSLAVADLLVGLVGIPCALLASV--GLPRHLYACLFTISLLVV 85 (123)
Q Consensus 8 ~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~La~sdl~~~~~~~~~~~~~~~--~~~~~~~~C~~~~~~~~~ 85 (123)
...++.++.++|++||.+++.++.+++++|++.++++.|||++|++.++...|..+.... .|..++..|+...++...
T Consensus 35 ~~~~~~~i~~~gi~gN~lvi~vi~~~~~l~~~~~~~l~~LaiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~ 114 (364)
T 2ks9_A 35 WAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIA 114 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhHHHHHHH
Confidence 467889999999999999999999999999999999999999999998888887665543 577888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhccccc
Q psy3302 86 LCTISIFCLVAVSVDRYWAILFPMGYAR 113 (123)
Q Consensus 86 ~~~~s~~~l~~ia~~R~~~v~~p~~~~~ 113 (123)
+..+|.++++++|+|||++|++|++|+.
T Consensus 115 ~~~~s~~~l~~isidRy~aI~~P~~~~~ 142 (364)
T 2ks9_A 115 AVFASIYSMTAVAFDRYMAIIHPLQPRL 142 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 9999999999999999999999998863
No 17
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}
Probab=99.86 E-value=4.4e-22 Score=143.49 Aligned_cols=114 Identities=36% Similarity=0.550 Sum_probs=100.1
Q ss_pred hhHHHHHHHHHHHHHHHhHHhhhhheeccccCCchhhHHHHHHHHHHHhhhhchHHHHHHHh---cCCCcchhHHHHHHH
Q psy3302 6 VPYTICEVLVALGAVIGNSLVIVAFGREKRLRRRTNYYIVSLAVADLLVGLVGIPCALLASV---GLPRHLYACLFTISL 82 (123)
Q Consensus 6 ~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~La~sdl~~~~~~~~~~~~~~~---~~~~~~~~C~~~~~~ 82 (123)
....+++.+++++|++||+++++++.+++++|++.++++.|||++|++.++...|..+.... .|..++..|++..++
T Consensus 39 ~~~~~~~~~~~~~g~~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~~C~~~~~~ 118 (481)
T 3pbl_A 39 AYYALSYCALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVFVTL 118 (481)
T ss_dssp --CCSHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTSCCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCcchhhhHHHH
Confidence 34557789999999999999999999999999999999999999999999889988776553 477888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhccc---ccceeeee
Q psy3302 83 LVVLCTISIFCLVAVSVDRYWAILFPMGY---ARNVTTKI 119 (123)
Q Consensus 83 ~~~~~~~s~~~l~~ia~~R~~~v~~p~~~---~~~~~~~~ 119 (123)
..++..+|.+++++||+|||++|++|++| .+..++++
T Consensus 119 ~~~~~~~s~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~ 158 (481)
T 3pbl_A 119 DVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRR 158 (481)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHTTSSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccccccHHH
Confidence 99999999999999999999999999999 45555444
No 18
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=99.86 E-value=2.7e-21 Score=138.83 Aligned_cols=114 Identities=25% Similarity=0.343 Sum_probs=100.9
Q ss_pred hHHHHHHHHHHHHHHHhHHhhhhheeccccCCchhhHHHHHHHHHHHhhhhc-hHHHHHHHh--cCCCcchhHHHHHHHH
Q psy3302 7 PYTICEVLVALGAVIGNSLVIVAFGREKRLRRRTNYYIVSLAVADLLVGLVG-IPCALLASV--GLPRHLYACLFTISLL 83 (123)
Q Consensus 7 ~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~La~sdl~~~~~~-~~~~~~~~~--~~~~~~~~C~~~~~~~ 83 (123)
...+++.+++++|++||+++++++.+++++|++.++++.|||++|++.++.. .|..+.... .|..++..|++..++.
T Consensus 36 ~~~i~~~ii~i~gi~gN~lvi~vi~~~~~~~~~~~~ll~~LaiaDll~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~ 115 (448)
T 2z73_A 36 SLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIG 115 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSTTHHHHHHHHHHHHHHHHHHSTTHHHHHHHTTSCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHhhhhhhhccccCCccchHHHHHHHHHHHHHHHHhccHHHHHHhcCCccCCHHHHHHHHHHH
Confidence 4567888999999999999999999999999999999999999999998763 666555443 5777889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhcccccceeeeee
Q psy3302 84 VVLCTISIFCLVAVSVDRYWAILFPMGYARNVTTKIA 120 (123)
Q Consensus 84 ~~~~~~s~~~l~~ia~~R~~~v~~p~~~~~~~~~~~~ 120 (123)
..+..+|+++++++|+|||++|++|++|+++++++++
T Consensus 116 ~~~~~~S~~~l~~isidRy~aI~~P~~~~~~~~~~~~ 152 (448)
T 2z73_A 116 GIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRA 152 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCTTTCCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccceechhHH
Confidence 9999999999999999999999999999988887764
No 19
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A
Probab=99.09 E-value=5.8e-11 Score=55.25 Aligned_cols=31 Identities=39% Similarity=0.627 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHhHhhcccccceeeee
Q psy3302 89 ISIFCLVAVSVDRYWAILFPMGYARNVTTKI 119 (123)
Q Consensus 89 ~s~~~l~~ia~~R~~~v~~p~~~~~~~~~~~ 119 (123)
+|++++++||+|||++|++|++|+..+++++
T Consensus 2 ~Si~~L~~is~dRy~aI~~Pl~~~~~~t~~~ 32 (32)
T 1hll_A 2 SSIVHLCAISLDRYWSITQAIEYNLKRTPRR 32 (32)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHGGGSSCCCCC
T ss_pred cHHHHHHHHHHHHHHHhhhhhhcccccCCCC
Confidence 6889999999999999999999999888764
No 20
>2lot_A Apelin receptor; membrane protein; NMR {Homo sapiens} PDB: 2lou_A 2lov_A 2low_A
Probab=94.68 E-value=0.0014 Score=34.76 Aligned_cols=29 Identities=31% Similarity=0.240 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHHHHhHHhhhhheeccc
Q psy3302 7 PYTICEVLVALGAVIGNSLVIVAFGREKR 35 (123)
Q Consensus 7 ~~~~~~~~~~~~g~~~N~~vl~~i~~~~~ 35 (123)
....+|.+++++|++||.++++++.+++.
T Consensus 30 ~lp~~Y~lvFvlGl~GN~lvl~v~~~~~~ 58 (64)
T 2lot_A 30 LIPAIYMLVFLLGTTGNGLVLWTVFRKKG 58 (64)
T ss_dssp SSHHHHHHTTTTTTTSSSSHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHhhhhhheeeeeEecc
Confidence 45688999999999999999998877654
Done!