RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3302
(123 letters)
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
This family contains, amongst other G-protein-coupled
receptors (GCPRs), members of the opsin family, which
have been considered to be typical members of the
rhodopsin superfamily. They share several motifs, mainly
the seven transmembrane helices, GCPRs of the rhodopsin
superfamily. All opsins bind a chromophore, such as
11-cis-retinal. The function of most opsins other than
the photoisomerases is split into two steps: light
absorption and G-protein activation. Photoisomerases, on
the other hand, are not coupled to G-proteins - they are
thought to generate and supply the chromophore that is
used by visual opsins.
Length = 251
Score = 72.3 bits (178), Expect = 2e-16
Identities = 38/96 (39%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 28 VAFGREKRLRRRTNYYIVSLAVADLLVGLVGIPCALLASVGLPRHL--YACLFTISLLVV 85
+ R K+LR TN ++++LAVADLL L P AL VG C L VV
Sbjct: 1 LVILRTKKLRTPTNIFLLNLAVADLLFLLTLPPWALYYLVGGDWPFGDALCKLVGFLFVV 60
Query: 86 LCTISIFCLVAVSVDRYWAILFPMGYARNVTTKIAV 121
SI L A+S+DRY AI+ P+ Y R T + A
Sbjct: 61 NGYASILLLTAISIDRYLAIVHPLRYRRIRTPRRAK 96
>gnl|CDD|192535 pfam10320, 7TM_GPCR_Srsx, Serpentine type 7TM GPCR chemoreceptor
Srsx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srsx is a solo family
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'.
Length = 257
Score = 45.7 bits (109), Expect = 7e-07
Identities = 24/92 (26%), Positives = 42/92 (45%)
Query: 20 VIGNSLVIVAFGREKRLRRRTNYYIVSLAVADLLVGLVGIPCALLASVGLPRHLYACLFT 79
+ GN ++I+ ++K+LR + +Y I +ADLL I +L G C
Sbjct: 5 IFGNVIMIILTFKKKKLRSKCSYLICVQCLADLLCLSGEIIFVVLLFTGTQLTRNECFLI 64
Query: 80 ISLLVVLCTISIFCLVAVSVDRYWAILFPMGY 111
I + T ++ + +DR A+ FP+ Y
Sbjct: 65 IIPYIFGQTAQSPLMLMIGIDRLIAVKFPIFY 96
>gnl|CDD|220695 pfam10328, 7TM_GPCR_Srx, Serpentine type 7TM GPCR chemoreceptor
Srx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srx is part of the Srg
superfamily of chemoreceptors. Chemoperception is one of
the central senses of soil nematodes like C. elegans
which are otherwise 'blind' and 'deaf'.
Length = 275
Score = 31.8 bits (73), Expect = 0.063
Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 8/117 (6%)
Query: 13 VLVALGAVIGNSLVIVAFGREKRLRRRTNYYIVSLAVADLLVGLVGI----PCALLASVG 68
L++L +I N L+ F + L+ + A+++ ++ + + P LL
Sbjct: 1 FLISLFGIILNWLIFYIFLKLPSLKNSFGILCANKAISNAIICTIFLFYVVPMTLLDLSF 60
Query: 69 LPRHLYACLFTISLLVVLCTISIFCLVAVSVDRYWAILFPMGYAR---NVTTKIAVC 122
LP L + + + LL + IS + +S++R+ A+ FP Y + TKI +
Sbjct: 61 LPELLNSHIGGLILLGLYE-ISPLTHLLISLNRFCAVFFPFKYKKIFSIKNTKIIIT 116
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like
protein; Provisional.
Length = 335
Score = 28.6 bits (64), Expect = 0.73
Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 26/117 (22%)
Query: 20 VIGNSLVIVAFGREKRLRRRTNYYIVSLAVADLLVGLVGIPCALLASVGLPRHLY----- 74
++GN +VI + +++ + Y+++LAV+DLL + LP +Y
Sbjct: 55 LVGNIIVIY-VLTKTKIKTPMDIYLLNLAVSDLLFVMT-----------LPFQIYYYILF 102
Query: 75 -------ACLFTISLLVVLCTISIFCLVAVSVDRYWAILFPMGYA--RNVTTKIAVC 122
AC L + S+ + +SVDRY AI+ P+ V V
Sbjct: 103 QWSFGEFACKIVSGLYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVS 159
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein;
Provisional.
Length = 417
Score = 28.4 bits (63), Expect = 0.92
Identities = 26/111 (23%), Positives = 59/111 (53%), Gaps = 6/111 (5%)
Query: 13 VLVALGAVIGNSLVIVAFGREKRLRRRTNYYIVSLAVADLLVGLVGIPCALLASVG--LP 70
++ LG + GN+ +I+ K+++ T+ YI +LA++DL+ ++ P + +
Sbjct: 107 IIFILG-LFGNAAIIMIL-FCKKIKTITDIYIFNLAISDLIF-VIDFPFIIYNEFDQWIF 163
Query: 71 RHLYACLFTISLLVVLCTISIFCLVAVSVDRYWAILFPMGYARNVTTKIAV 121
+ + S + + ++F + +S+DRY+AIL+P+ + + T I +
Sbjct: 164 GDFMCKVISASYYIGFFS-NMFLITLMSIDRYFAILYPISFQKYRTFNIGI 213
>gnl|CDD|165024 PHA02642, PHA02642, C-type lectin-like protein; Provisional.
Length = 216
Score = 27.8 bits (61), Expect = 1.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 70 PRHLYACLFTISLLVVLCTISIFCLVAVSVD 100
P LY C+ TI +L+ + + I L+A D
Sbjct: 47 PEKLYCCIITICILITINLVPIIILMAFKSD 77
>gnl|CDD|225451 COG2898, COG2898, Uncharacterized conserved protein [Function
unknown].
Length = 538
Score = 27.7 bits (62), Expect = 1.7
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Query: 6 VPYTICEVLVALGAVIGNSLVIVAFGREKRLRRRTNYYIVSLAVADLLVGLVGIPCALLA 65
VP + E +++G L+++A G KRL+R +A L+V ++G+ +L
Sbjct: 48 VPLPLIEASHLTASLLGALLLLLARGLRKRLKR--------AWIAALIVLILGLVLSLAK 99
Query: 66 SVGLPRHLYACLFTISLLV 84
+ L + LL
Sbjct: 100 GLAWIEAAVLFLIAVLLLA 118
>gnl|CDD|147574 pfam05462, Dicty_CAR, Slime mold cyclic AMP receptor. This family
consists of cyclic AMP receptor (CAR) proteins from
slime molds. CAR proteins are responsible for
controlling development in Dictyostelium discoideum.
Length = 305
Score = 27.4 bits (61), Expect = 1.8
Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 9/103 (8%)
Query: 1 MDALNVPYTICEVLVALGAVIGNSLVIVAFGREKRLRRRTNYYIVSLAVADLLVGLVGIP 60
++ Y++ ++ ++IG LV++ F R K LR I + LL L+
Sbjct: 4 QQEIDATYSVL-LIADFTSIIGCFLVLIGFWRLKLLRNHITKVISCFCLTSLLKDLISTI 62
Query: 61 CALL---ASVGLPRHLYACLFTI-SL---LVVLC-TISIFCLV 95
L G P +LYA + T SL L LC SI+ L+
Sbjct: 63 LTLTNSAQYNGFPCYLYAIVITYGSLACWLWTLCLAFSIYNLI 105
>gnl|CDD|184948 PRK14986, PRK14986, glycogen phosphorylase; Provisional.
Length = 815
Score = 27.1 bits (60), Expect = 2.9
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Query: 31 GREKRLRRRTNYYIVSLAVADLL 53
GRE RLR+ Y++VS V D+L
Sbjct: 278 GRELRLRQE--YFLVSATVQDIL 298
>gnl|CDD|189857 pfam01146, Caveolin, Caveolin. All three known Caveolin forms have
the FEDVIAEP caveolin 'signature motif' within their
hydrophilic N-terminal domain. Caveolin 2 (Cav-2) is
co-localised and co-expressed with Cav-1/VIP21, forms
heterodimers with it and needs Cav-1 for proper membrane
localisation. Cav-3 has greater protein sequence
similarity to Cav-1 than to Cav-2. Cellular processes
caveolins are involved in include vesicular transport,
cholesterol homeostasis, signal transduction, and tumour
suppression.
Length = 148
Score = 25.3 bits (56), Expect = 7.3
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 52 LLVGLVGIPCALLASVGLPRHLYACLFTISL-LVVLCTISIFCLVAVSVDRYWAIL 106
LL L+ IP A + + L+A L + + +VV C S + S+ R W+
Sbjct: 73 LLTALLAIPLAFVWGI-----LFALLSCLHIWIVVPCIKSCL-IELPSIQRIWSSC 122
>gnl|CDD|178101 PLN02483, PLN02483, serine palmitoyltransferase.
Length = 489
Score = 25.5 bits (56), Expect = 8.7
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 94 LVAVSVDRYWAILFPMGYARNVTT 117
LVA V + AI+F MGYA N T
Sbjct: 154 LVARFVGKPAAIVFGMGYATNSTI 177
>gnl|CDD|233506 TIGR01647, ATPase-IIIA_H, plasma-membrane proton-efflux P-type
ATPase. This model describes the plasma membrane proton
efflux P-type ATPase found in plants, fungi, protozoa,
slime molds and archaea. The best studied representative
is from yeast.
Length = 754
Score = 25.8 bits (57), Expect = 8.8
Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 5/67 (7%)
Query: 30 FGREKRLRRRT-----NYYIVSLAVADLLVGLVGIPCALLASVGLPRHLYACLFTISLLV 84
FG+ L + T + + + L+ L+G+ + V + + +
Sbjct: 182 FGKAAALVQSTETGSGHLQKILSKIGLFLIVLIGVLVLIELVVLFFGRGESFREGLQFAL 241
Query: 85 VLCTISI 91
VL I
Sbjct: 242 VLLVGGI 248
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.333 0.145 0.445
Gapped
Lambda K H
0.267 0.0752 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,329,081
Number of extensions: 583316
Number of successful extensions: 1361
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1351
Number of HSP's successfully gapped: 99
Length of query: 123
Length of database: 10,937,602
Length adjustment: 85
Effective length of query: 38
Effective length of database: 7,167,512
Effective search space: 272365456
Effective search space used: 272365456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 53 (24.1 bits)