RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3302
         (123 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 53.8 bits (128), Expect = 4e-10
 Identities = 15/50 (30%), Positives = 24/50 (48%)

Query: 13 VLVALGAVIGNSLVIVAFGREKRLRRRTNYYIVSLAVADLLVGLVGIPCA 62
           L+ +     N L +    + K+LR   NY +++LAVADL +   G    
Sbjct: 45 FLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTT 94


>d1a59a_ a.103.1.1 (A:) Citrate synthase {Antarctic bacterium DS2-3R
           [TaxId: 56673]}
          Length = 377

 Score = 24.4 bits (52), Expect = 4.7
 Identities = 3/20 (15%), Positives = 7/20 (35%)

Query: 62  ALLASVGLPRHLYACLFTIS 81
                +G    ++  LF  +
Sbjct: 324 PTYNLMGFDTEMFTPLFIAA 343


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.333    0.145    0.445 

Gapped
Lambda     K      H
   0.267   0.0583    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 439,522
Number of extensions: 17477
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 9
Length of query: 123
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 48
Effective length of database: 1,377,846
Effective search space: 66136608
Effective search space used: 66136608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 47 (22.2 bits)