BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy3306
         (535 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4I8V|A Chain A, Human Cytochrome P450 1a1 In Complex With
           Alpha-naphthoflavone
 pdb|4I8V|B Chain B, Human Cytochrome P450 1a1 In Complex With
           Alpha-naphthoflavone
 pdb|4I8V|C Chain C, Human Cytochrome P450 1a1 In Complex With
           Alpha-naphthoflavone
 pdb|4I8V|D Chain D, Human Cytochrome P450 1a1 In Complex With
           Alpha-naphthoflavone
          Length = 491

 Score = 30.0 bits (66), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 8/91 (8%)

Query: 46  PQGGVASSTLFAIAINTITSYI---HPSLSSSLFVDDFAIFTRDKNKDLLISTMQESIDK 102
           P  G   +    +A N + S+     P+ S+S ++++       K  ++LIST+QE +  
Sbjct: 98  PDSGPVWAARRRLAQNGLKSFSIASDPASSTSCYLEEHV----SKEAEVLISTLQELMAG 153

Query: 103 LNHFSDQTGLYFSPQKTQCVL-FSRKYKQNN 132
             HF+    +  S     C + F R+Y  N+
Sbjct: 154 PGHFNPYRYVVVSVTNVICAICFGRRYDHNH 184


>pdb|4GNS|B Chain B, Crystal Structure Of The Chs5-Chs6 Exomer Cargo Adaptor
           Complex
          Length = 754

 Score = 29.6 bits (65), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 11/103 (10%)

Query: 149 QFRFLGLTFDKKMNWKIHLRNLKQSCVAR------SRILKILSKKSWASDRKMLIRMYK- 201
           ++  LGL   +  +W+  +  L+ S VAR       ++LKI  +         L+     
Sbjct: 615 EWELLGLIMLRTWHWEDAVACLRTSIVARFDPVSCQQLLKIYLQPPKNIQEVTLLDTDTI 674

Query: 202 -SLIRSKLDYGCPAYNSASANTLQILNPVQNLCLRLATGAFRS 243
            SL+  K+ Y C  YN      LQ+L   + LC  L T   R+
Sbjct: 675 ISLLIKKISYDCRYYNYCQIFNLQLL---EKLCNELGTHILRN 714


>pdb|2Z23|A Chain A, Crystal Structure Of Y.Pestis Oligo Peptide Binding
          Protein Oppa With Tri-Lysine Ligand
          Length = 517

 Score = 28.9 bits (63), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 23 ERSFKIRLNNST-LSQDFSNVCGIPQGGVASSTLFAIAINTITSYIHPSLSSSLFVDDFA 81
          E+   +R N S   S D   + G+P+  ++   L  + IN     I P  + S    DF 
Sbjct: 11 EKQVLVRNNGSEPQSLDPHKIEGVPESNISRDLLEGLVINDPNGNIVPGAAESWDNKDFK 70

Query: 82 IFTRDKNKD 90
          ++T +  KD
Sbjct: 71 VWTFNIRKD 79


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.135    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,618,801
Number of Sequences: 62578
Number of extensions: 566160
Number of successful extensions: 1214
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1214
Number of HSP's gapped (non-prelim): 4
length of query: 535
length of database: 14,973,337
effective HSP length: 103
effective length of query: 432
effective length of database: 8,527,803
effective search space: 3684010896
effective search space used: 3684010896
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)