BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3306
(535 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q03270|PO12_NASVI Retrovirus-related Pol polyprotein from type-1 retrotransposable
element R1 2 (Fragment) OS=Nasonia vitripennis PE=4 SV=1
Length = 410
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 97/214 (45%), Gaps = 16/214 (7%)
Query: 44 GIPQGGVASSTLFAIAINTITSYIHPS-LSSSLFVDDFAIFTRDKNKDLLISTMQESIDK 102
G PQG + L+ +++N + + S +S F DD AI + + + E ++
Sbjct: 1 GCPQGSIGGPILWNLSMNGMLIELAGSGVSVCAFADDVAILAEGNTRKEVERVINEKMEI 60
Query: 103 LNHFSDQTGLYFSPQKTQCVLFSRKYKQNNIAVNLT----MYDSRIEVVDQFRFLGLTFD 158
+ + ++ G+ S +KT C+L KY +N AV ++ +Y RI+ V FR+LG+
Sbjct: 61 VYKWGEKMGVSVSEEKTVCMLLKGKYVTSNRAVRVSKTINVY-KRIKYVSCFRYLGVNVT 119
Query: 159 KKMNWKIHLRNLKQSCVARSRILKILSKKSWASDRKMLIRMYKSLIRSKLDYGCPAY--- 215
+ M + H+R +K + LK + ++ W R + + ++ Y A+
Sbjct: 120 EGMGFGEHVRGMKVKVAKGVQKLKRVLRRDWGLRRAASHLVLRGTFLPQVSYCASAWYEV 179
Query: 216 -------NSASANTLQILNPVQNLCLRLATGAFR 242
N+ SA ++ N+C ++T A +
Sbjct: 180 LKYEYGRNALSAAVRYVMYACLNVCRTVSTEAMQ 213
>sp|P21328|RTJK_DROME RNA-directed DNA polymerase from mobile element jockey
OS=Drosophila melanogaster GN=pol PE=1 SV=1
Length = 916
Score = 69.3 bits (168), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 59/276 (21%), Positives = 127/276 (46%), Gaps = 25/276 (9%)
Query: 20 YMDERSFKIRLNNSTLSQDFSNVCGIPQGGVASSTLFAIAIN------TITSYIHPSLSS 73
+++ER+F + ++ S G+PQG V TL+++ + +T +
Sbjct: 618 FLEERTFHVSVDGYKSSIK-PIAAGVPQGSVLGPTLYSVFASDMPTHTPVTEVDEEDVLI 676
Query: 74 SLFVDDFAIFTRDKNKDLLISTMQESIDKLNHFSDQTGLYFSPQKTQCVLFSRKYKQNNI 133
+ + DD A+ T+ K+ S +QE +D +++ + + +K V F+ +
Sbjct: 677 ATYADDTAVLTKSKSILAATSGLQEYLDAFQQWAENWNVRINAEKCANVTFANR---TGS 733
Query: 134 AVNLTMYDSRIEVVDQFRFLGLTFDKKMNWKIHLRNLKQSCVARSRILKILSKKSW-ASD 192
+++ I +++LG+T D+K+ + H+ N++Q+ R+++ ++ SW +
Sbjct: 734 CPGVSLNGRLIRHHQAYKYLGITLDRKLTFSRHITNIQQAF--RTKVARM----SWLIAP 787
Query: 193 RKML-----IRMYKSLIRSKLDYGCPAYNSASANTLQILNPVQNLCLRLATGAFRSSPVV 247
R L + +YKS++ L YG Y A+ + L + +Q LR +GA
Sbjct: 788 RNKLSLGCKVNIYKSILAPCLFYGLQVYGIAAKSHLNKIRILQAKTLRRISGAPWYMRTR 847
Query: 248 SLEAETGEPNLDIRRKMLTCNYITKVLSIENHPNAM 283
+E + P L + + + Y+ + + HPN++
Sbjct: 848 DIERDLKVPKLGDKLQNIAQKYMER---LNVHPNSL 880
>sp|P21329|RTJK_DROFU RNA-directed DNA polymerase from mobile element jockey
OS=Drosophila funebris GN=jockey\pol PE=1 SV=1
Length = 916
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/274 (20%), Positives = 119/274 (43%), Gaps = 21/274 (7%)
Query: 20 YMDERSFKIRLNNSTLSQDFSNVCGIPQGGVASSTLFAIAI------NTITSYIHPSLSS 73
+ + R F + + S F G+PQG V TL++I N +T +
Sbjct: 618 FWEGRKFSVTADGCRSSVKFIE-AGVPQGSVLGPTLYSIFTADMPNQNAVTGLAEGEVLI 676
Query: 74 SLFVDDFAIFTRDKNKDLLISTMQESIDKLNHFSDQTGLYFSPQKTQCVLFSRKYKQNNI 133
+ + DD A+ T+ +QE +D ++ + + + K V F+ +
Sbjct: 677 ATYADDIAVLTKSTCIVEATDALQEYLDAFQEWAVKWNVSINAGKCANVTFTNAIRD--- 733
Query: 134 AVNLTMYDSRIEVVDQFRFLGLTFDKKMNWKIHLRNLKQSCVARSRILK----ILSKKSW 189
+T+ S + ++++LG+ D+ + ++ H+ +L+ S R+RI K + ++
Sbjct: 734 CPGVTINGSLLSHTHEYKYLGVILDRSLTFRRHITSLQHSF--RTRITKMNWLLAARNKL 791
Query: 190 ASDRKMLIRMYKSLIRSKLDYGCPAYNSASANTLQILNPVQNLCLRLATGAFRSSPVVSL 249
+ D K +++YK ++ L Y Y A+ L + +Q LR +GA +
Sbjct: 792 SLDNK--VKIYKCIVAPGLFYAIQVYGIAARTHLNKIRVLQAKMLRKISGAPWYMRTRDI 849
Query: 250 EAETGEPNLDIRRKMLTCNYITKVLSIENHPNAM 283
E + P + + + + Y + +++HPN++
Sbjct: 850 ECDLKVPKIGDKIREVAKKYHER---LDSHPNSL 880
>sp|P16425|Y2R2_DROME Putative 115 kDa protein in type-1 retrotransposable element R1DM
OS=Drosophila melanogaster PE=4 SV=1
Length = 1021
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/252 (20%), Positives = 101/252 (40%), Gaps = 7/252 (2%)
Query: 20 YMDERSFKIRLNNSTLSQDFSNVCGIPQGGVASSTLFAIAINTITSYIHPSLSSSLFVDD 79
+ R IR ++ T+ + C PQG ++ ++ I ++ + + P S + DD
Sbjct: 609 FFSGRRAVIRSSSGTVEVPVTRGC--PQGSISGPFIWDILMDVLLQRLQPYCQLSAYADD 666
Query: 80 FAIFTRDKNKDLLISTMQESIDKLNHFSDQTGLYFSPQKTQCVLFSRKYKQNNIAVNLTM 139
+ ++ +L + + + + + G S KT +L ++ A +
Sbjct: 667 LLLLVEGNSRAVLEEKGAQLMSIVETWGAEVGDCLSTSKTVIMLLKGALRR---APTVRF 723
Query: 140 YDSRIEVVDQFRFLGLTFDKKMNWKIHLRNLKQSCVARSRILKILSKKSWASDRKMLIRM 199
+ V R+LG+T + M + H+ +L+Q L + + W + +
Sbjct: 724 AGRNLPYVRSCRYLGITVSEGMKFLTHIASLRQRMTGVVGALARVLRADWGFSPRARRTI 783
Query: 200 YKSLIRSKLDYGCPA-YNSASANTLQ-ILNPVQNLCLRLATGAFRSSPVVSLEAETGEPN 257
Y L+ + +G P Y++A Q L Q L L R+ V+L+ G P
Sbjct: 784 YDGLMAPCVLFGAPVWYDTAEQVAAQRRLASCQRLILLGCLSVCRTVSTVALQVLGGAPP 843
Query: 258 LDIRRKMLTCNY 269
LD+ K+L Y
Sbjct: 844 LDLAAKLLAIKY 855
>sp|Q03271|PO13_NASVI Retrovirus-related Pol polyprotein from type-1 retrotransposable
element R1 3 (Fragment) OS=Nasonia vitripennis PE=4 SV=1
Length = 383
Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 65/143 (45%), Gaps = 3/143 (2%)
Query: 76 FVDDFAIFTRDKNKDLLISTMQESIDKLNHFSDQTGLYFSPQKTQCVLFSRKYKQNNIAV 135
F DD + + ++ L + E++ + + G+ S KT C++ N V
Sbjct: 4 FADDLLLLVQGNRRNELEQSASEALSVVYRYGTNIGVEVSDSKTVCMMLKGSLNMLNRVV 63
Query: 136 NLT---MYDSRIEVVDQFRFLGLTFDKKMNWKIHLRNLKQSCVARSRILKILSKKSWASD 192
+++ M D RI VD+ R+LG+ M++ +H+ +K+ L+ + +KSW
Sbjct: 64 HVSTNGMDDKRIRCVDRVRYLGVNVGIGMDFSVHIDGMKRRLTTAIMRLRGVLRKSWGLK 123
Query: 193 RKMLIRMYKSLIRSKLDYGCPAY 215
R ++ + K L + YG +
Sbjct: 124 RGVVSMVVKGLFLPAVMYGASVW 146
>sp|Q9NBX4|RTXE_DROME Probable RNA-directed DNA polymerase from transposon X-element
OS=Drosophila melanogaster GN=X-element\ORF2 PE=3 SV=1
Length = 908
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/241 (19%), Positives = 102/241 (42%), Gaps = 33/241 (13%)
Query: 15 NFLFKYMDERSFKIRLNNSTLSQDFSNVCGIPQGGVASSTLFAIAINTITSYIHPSLSSS 74
L Y++ R F +R + S +S + + G+PQG V L+ + S+ P S
Sbjct: 611 GLLKSYLEGRRFAVRFH-SAISTEHNVAAGVPQGSVLGPLLYCL-----YSHDMPQPDVS 664
Query: 75 L--------FVDDFAIFTRDKNKDLLISTMQESIDKLNHFSDQTGLYFSPQKTQCVLFSR 126
L F DD + R + + +Q+ + + ++ + + + K+ V F+
Sbjct: 665 LYGKSMLATFADDVCVTYRSRCEHDAADGIQDFAYRFSEWARRWNIGINSSKSNNVCFTL 724
Query: 127 KYKQNNIAVNLTMYDSRIEVV--DQFRFLGLTFDKKMNWKIHLRNLKQSCVARSRILKIL 184
K + +Y + V + ++LG+ D+++ + H+ ++ R+R+ +
Sbjct: 725 KRRTPP-----PVYIEEVPVPQPNAAKYLGVLLDRRLTFSKHVTDI------RTRLRAKV 773
Query: 185 SKKSWASDRKML------IRMYKSLIRSKLDYGCPAYNSASANTLQILNPVQNLCLRLAT 238
+K W + + +YK ++ YGC + A + ++ + +QN RL T
Sbjct: 774 AKHYWLLSSRSKLSLSNKLTIYKQILAPNWKYGCQIWGLACDSHIKRIQAIQNKVARLIT 833
Query: 239 G 239
G
Sbjct: 834 G 834
>sp|Q95SX7|RTBS_DROME Probable RNA-directed DNA polymerase from transposon BS
OS=Drosophila melanogaster GN=RTase PE=2 SV=1
Length = 906
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/231 (22%), Positives = 101/231 (43%), Gaps = 10/231 (4%)
Query: 15 NFLFKYMDERSFKIRLNNSTLSQDFSNVCGIPQGGVASSTLFAIAINTI---TSYIHPSL 71
L Y+++R F +R+ NS S G+PQG V L+++ + +Y
Sbjct: 612 GVLKSYLEDRRFMVRVRNS-YSIPRVMRAGVPQGSVLGPLLYSVFTADLPCPNAYHMADP 670
Query: 72 SSSL---FVDDFAIFTRDKNKDLLISTMQESIDKLNHFSDQTGLYFSPQKTQCVLFSRKY 128
+L + DD A+ + +QE + L + + L +PQKT F+ K
Sbjct: 671 RKALLATYADDIALLYSSNCCNEAARGLQEYLTTLAAWCKRWILKVNPQKTINPCFTLK- 729
Query: 129 KQNNIAVNLTMYDSRIEVVDQFRFLGLTFDKKMNWKIHLRNLKQSCVARSRILK-ILSKK 187
+ + + + ++ Q ++LG+T DK++ + HL+ + C R + L+ +L++K
Sbjct: 730 TLSPVTAPIELEGVILDQPSQAKYLGITLDKRLTFGPHLKATTRRCYQRMQQLRWLLNRK 789
Query: 188 SWASDRKMLIRMYKSLIRSKLDYGCPAYNSASANTLQILNPVQNLCLRLAT 238
S + R +Y + YG + A+ + + +QN +R T
Sbjct: 790 STMTLRAKRA-VYVHCVAPIWLYGIQIWGIAAKSNYNRIQVLQNRAMRAIT 839
>sp|Q03277|PO11_SCICO Retrovirus-related Pol polyprotein from type-1 retrotransposable
element R1 (Fragment) OS=Sciara coprophila PE=4 SV=1
Length = 1004
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/249 (20%), Positives = 98/249 (39%), Gaps = 20/249 (8%)
Query: 44 GIPQGGVASSTLFAIAINTIT-SYIHPSLSSSLFVDDFAIFTRDKNKDLLISTMQESIDK 102
G PQG + ++ + +N + + + F DD I ++ L +
Sbjct: 604 GCPQGSKSGPAMWKLVMNELLLALVAAGFFIVAFADDGTIVIGANSRSALEELGTRCLQL 663
Query: 103 LNHFSDQTGLYFSPQKTQCVLFSRKYKQNN---IAVNLTMYDSRIEVVDQFRFLGLTFDK 159
+ + + + S KT C+L N I +N T + EV + LG+ +
Sbjct: 664 CHEWGKRVCVPVSAGKTTCILMKGHLSANRPPCIRLNGTSISYKSEV----KHLGIFVAE 719
Query: 160 KMNWKIHLRNLKQSCVARSRILKILSKKSWASDRKMLIRMYKSLIRSKLDYGCPAYNSAS 219
+MN++ H L+ + L+ + +KSW R+ +YK L + + YG +
Sbjct: 720 RMNFRPHFVYLRGKILGLVGCLRRVMRKSWGLGRRATCILYKGLFVACMSYGASVW---- 775
Query: 220 ANTLQ------ILNPVQNLCLRLATGAFRSSPVVSLEAETGE--PNLDIRRKMLTCNYIT 271
TL+ +LN Q L L + R+ ++ GE +L+ R+ L +
Sbjct: 776 FRTLRFSYASILLNRCQRLVLYASLNVCRTVSTERMQVLHGELPWDLEATRRGLLSEFRK 835
Query: 272 KVLSIENHP 280
+ ++ P
Sbjct: 836 GITPVDGDP 844
>sp|Q03269|PO11_NASVI Retrovirus-related Pol polyprotein from type-1 retrotransposable
element R1 (Fragment) OS=Nasonia vitripennis PE=4 SV=1
Length = 337
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/205 (19%), Positives = 88/205 (42%), Gaps = 12/205 (5%)
Query: 44 GIPQGGVASSTLFAIAINTITSYIHPSLSSSL--FVDDFAIFTRDKNKDLLISTMQESID 101
G PQG ++ ++ + +N + + +++ + + DD I ++ + E +
Sbjct: 1 GCPQGSISGPYMWNLCMNGLLDRL-SAMNERIVAYADDLMIVANGNSRMEMERMADECMR 59
Query: 102 KLNHFSDQTGLYFSPQKTQCVLFSRKYKQNNIAVNLTMYD---SRIEVVDQFRFLGLTFD 158
+ + + G+ S +KT C++ K + + + + + S I V R+LG+
Sbjct: 60 IVYEWGREVGVSISEKKTVCIMLKGKLNVDGRRMRVAVAEGTISSIGYVKSARYLGVCMG 119
Query: 159 KKMNWKIHLRNLKQSCVARSRILKILSKKSWASDRKMLIRMYKSLIRSKLDYGCPA-YNS 217
++M++ +R L + L+ + +K W +K K L+ + + YG Y
Sbjct: 120 ERMSFADDIRGLITKVMGAIGGLRRVMRKEWGVKKKTAYTWAKGLLLAGVMYGSSVWYEG 179
Query: 218 ASANTL-QILNPVQNL----CLRLA 237
T+ + +N +Q CLR+
Sbjct: 180 MKYKTMRESMNSIQRCAMYACLRVC 204
>sp|Q03272|PO14_NASVI Retrovirus-related Pol polyprotein from type-1 retrotransposable
element R1 4 (Fragment) OS=Nasonia vitripennis PE=4 SV=1
Length = 392
Score = 42.0 bits (97), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/184 (20%), Positives = 66/184 (35%), Gaps = 15/184 (8%)
Query: 76 FVDDFAIFTRDKNKDLLISTMQESIDKLNHFSDQTGLYFSPQKTQCVLFSRKYKQNNIAV 135
F DD A+ ++ + + + + L S KT + + + AV
Sbjct: 2 FADDLAVLVEGDSRAEIEKVGKAVVKHIVERCSAIKLEVSESKTVGIFVKKPKVVGSKAV 61
Query: 136 NLTMYDSR---------------IEVVDQFRFLGLTFDKKMNWKIHLRNLKQSCVARSRI 180
+ D R I R+LG+ FD + H + L++ V
Sbjct: 62 KINRKDCRKGGARNLKIELGGKSISFEQSVRYLGVHFDANLGISAHCKYLREKLVPLFSD 121
Query: 181 LKILSKKSWASDRKMLIRMYKSLIRSKLDYGCPAYNSASANTLQILNPVQNLCLRLATGA 240
L+ L++ W K L +YK + + Y + A+T +IL + L T
Sbjct: 122 LRKLAQCQWGLGHKALETIYKGVFVPTVCYASARWYKEGAHTDRILEDLHRQILIAITRC 181
Query: 241 FRSS 244
+RS+
Sbjct: 182 YRST 185
>sp|Q9US53|JMJ2_SCHPO Jumonji/ARID domain-containing protein 2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=jmj2 PE=4 SV=1
Length = 715
Score = 33.9 bits (76), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 47/119 (39%), Gaps = 6/119 (5%)
Query: 413 LLQSLITIKELGVNKALIITDSLMYPWKSSCQKSRLDEVCLMRMRLGHSKITHSHLFRRE 472
+L + + L N A I+ S + PW K L ++R R +I + L
Sbjct: 597 VLSHDMLVYNLATNPASEISVSELRPWVHEAVKRELGIRIMIRGRYDLKEILYRELMEDA 656
Query: 473 DRPMCQQCQVPMTIEHILIACRNMRFRPPSFSSTSISDI------LKNDEGTLKEVLQF 525
+ CQ C+ + +C+++ P D+ LK D+ L+++L +
Sbjct: 657 ENWQCQHCKAFSYFSQVACSCKSITVCPLHIEYLCKCDLSNKTLRLKVDDNELQKLLSY 715
>sp|Q5RAU0|ACOX3_PONAB Peroxisomal acyl-coenzyme A oxidase 3 OS=Pongo abelii GN=ACOX3 PE=2
SV=1
Length = 700
Score = 33.9 bits (76), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 311 EDTIPFNSIMLKALPKEPWLLKSPKYDLSLSTYKKESM--PAQFFQNEFKNKIEENFKDH 368
ED + F + AL +P +SP DLSL Y++ + + F+ +F + +E+ FK
Sbjct: 42 EDMLRFKKTIFSALENDPLFARSPGADLSLEKYRELNFLRCRRIFEYDFLS-VEDMFKSP 100
Query: 369 VKIFT 373
+K+ T
Sbjct: 101 LKVLT 105
>sp|C3MX60|THIC_SULIM Phosphomethylpyrimidine synthase OS=Sulfolobus islandicus (strain
M.14.25 / Kamchatka #1) GN=thiC PE=3 SV=1
Length = 433
Score = 33.9 bits (76), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 334 PKYDLSLSTYKKESMPAQFFQNEFKNKIEENFKDHVKIFT 373
P Y + + ++KK+S A F ++E N +E++ KD V T
Sbjct: 121 PVYQIFIESFKKKSGGAYFTEDELLNTVEKHLKDGVAFMT 160
>sp|C3MMC3|THIC_SULIL Phosphomethylpyrimidine synthase OS=Sulfolobus islandicus (strain
L.S.2.15 / Lassen #1) GN=thiC PE=3 SV=1
Length = 433
Score = 33.9 bits (76), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 334 PKYDLSLSTYKKESMPAQFFQNEFKNKIEENFKDHVKIFT 373
P Y + + ++KK+S A F ++E N +E++ KD V T
Sbjct: 121 PVYQIFIESFKKKSGGAYFTEDELLNTVEKHLKDGVAFMT 160
>sp|C4KG47|THIC_SULIK Phosphomethylpyrimidine synthase OS=Sulfolobus islandicus (strain
M.16.4 / Kamchatka #3) GN=thiC PE=3 SV=1
Length = 433
Score = 33.9 bits (76), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 334 PKYDLSLSTYKKESMPAQFFQNEFKNKIEENFKDHVKIFT 373
P Y + + ++KK+S A F ++E N +E++ KD V T
Sbjct: 121 PVYQIFIESFKKKSGGAYFTEDELLNTVEKHLKDGVAFMT 160
>sp|C3N4K5|THIC_SULIA Phosphomethylpyrimidine synthase OS=Sulfolobus islandicus (strain
M.16.27) GN=thiC PE=3 SV=1
Length = 433
Score = 33.9 bits (76), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 334 PKYDLSLSTYKKESMPAQFFQNEFKNKIEENFKDHVKIFT 373
P Y + + ++KK+S A F ++E N +E++ KD V T
Sbjct: 121 PVYQIFIESFKKKSGGAYFTEDELLNTVEKHLKDGVAFMT 160
>sp|Q97X14|THIC2_SULSO Phosphomethylpyrimidine synthase 2 OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=thiC2
PE=3 SV=1
Length = 433
Score = 33.9 bits (76), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 334 PKYDLSLSTYKKESMPAQFFQNEFKNKIEENFKDHVKIFT 373
P Y + + ++KK+S A F ++E N +E++ KD V T
Sbjct: 121 PVYQIFIESFKKKSGGAYFTEDELLNTVEKHLKDGVAFMT 160
>sp|Q92247|BLI4_NEUCR Putative oxidoreductase bli-4, mitochondrial OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=bli-4 PE=1 SV=1
Length = 412
Score = 33.1 bits (74), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 364 NFKDHVKIFTDGSKNDLGVGCALTIPERNISKRFALNKNASIFHAELLALLQSLITIKEL 423
+ V + T GS+ +G G A T+ + N+SK F L++ +F L ++ EL
Sbjct: 93 DLSGKVAVITGGSEG-IGYGVAYTLIKHNLSKLFILSRKREVFDGALASIAS------EL 145
Query: 424 GVNKA 428
G +KA
Sbjct: 146 GQDKA 150
>sp|Q58242|Y832_METJA Uncharacterized protein MJ0832 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0832 PE=4 SV=1
Length = 1750
Score = 33.1 bits (74), Expect = 6.3, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 60/142 (42%), Gaps = 21/142 (14%)
Query: 252 ETGEPNLDIRRKMLTCNYITKVLSIENHPNAMRILNPLYKPKYENSNIKPTVGIQKKNLE 311
E GE ++I+R + NY K+ IE N L P PKY+ IKP
Sbjct: 643 EEGE-KIEIKRNEIVRNY--KLYVIEIAKNCTEDLKPYVIPKYKKERIKPAN-------Y 692
Query: 312 DTIPFNSIMLK--------ALPKEPWLLKSPKYDLSLSTYKK-ESMPAQFFQ--NEFKNK 360
D +P++ ++K P + KS L L+T +K E + + N+FK
Sbjct: 693 DQLPYDYRIIKEHLRKITDKKPYNDYAWKSNNRKLKLNTLEKIEQLNPHLREEINKFKLN 752
Query: 361 IEENFKDHVKIFTDGSKNDLGV 382
I K+ +I +G DL V
Sbjct: 753 IPFEIKEIKEIDYNGYVYDLSV 774
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 184,432,364
Number of Sequences: 539616
Number of extensions: 7337373
Number of successful extensions: 17597
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 17575
Number of HSP's gapped (non-prelim): 31
length of query: 535
length of database: 191,569,459
effective HSP length: 122
effective length of query: 413
effective length of database: 125,736,307
effective search space: 51929094791
effective search space used: 51929094791
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)