Query psy3306
Match_columns 535
No_of_seqs 345 out of 2273
Neff 9.3
Searched_HMMs 29240
Date Fri Aug 16 21:37:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3306.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3306hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kyl_A Telomerase reverse tran 99.4 9.7E-14 3.3E-18 138.0 7.1 103 2-121 266-375 (596)
2 2zd1_A Reverse transcriptase/r 99.2 3.3E-11 1.1E-15 128.3 11.7 74 42-120 148-224 (557)
3 1mu2_A HIV-2 RT; HIV-2 reverse 99.2 2.6E-10 9E-15 121.3 15.3 74 42-120 146-222 (555)
4 2kq2_A Ribonuclease H-related 98.8 9E-09 3.1E-13 89.2 6.4 74 366-440 4-86 (147)
5 2qkb_A Ribonuclease H1, HS-RNA 98.7 2.5E-08 8.4E-13 87.3 6.7 71 366-436 5-81 (154)
6 3fsi_A RT, reverse transcripta 98.5 1.2E-07 4.1E-12 90.3 7.0 88 43-160 163-253 (255)
7 3p1g_A Xenotropic murine leuke 98.5 1.5E-07 5.2E-12 82.7 6.3 66 368-436 23-91 (165)
8 4htu_A Ribonuclease H, RNAse H 98.5 6.9E-08 2.4E-12 80.7 3.4 70 366-436 3-75 (134)
9 3hst_B Protein RV2228C/MT2287; 98.5 1.5E-07 5.3E-12 80.9 5.6 68 368-436 3-77 (141)
10 2ehg_A Ribonuclease HI; RNAse 98.4 3.3E-07 1.1E-11 79.6 7.1 68 369-436 2-79 (149)
11 1zbf_A Ribonuclease H-related 98.4 1.4E-07 4.9E-12 80.5 4.2 70 366-436 9-81 (142)
12 3h08_A RNH (ribonuclease H); R 98.4 1.2E-07 4.1E-12 82.1 3.4 68 367-436 3-73 (146)
13 3u3g_D Ribonuclease H, RNAse H 98.4 1.7E-07 6E-12 80.4 4.4 68 368-436 3-80 (140)
14 3qio_A GAG-POL polyprotein; RN 98.3 8.3E-07 2.8E-11 76.9 6.5 65 366-436 10-76 (150)
15 2e4l_A Ribonuclease HI, RNAse 98.3 2.9E-07 1E-11 80.6 3.2 67 367-436 5-75 (158)
16 1jl1_A Ribonuclease HI; RNAse 98.3 3E-07 1E-11 80.3 3.2 66 368-436 4-73 (155)
17 1ril_A Ribonuclease H; hydrola 98.2 5.2E-07 1.8E-11 79.7 2.6 68 367-436 7-77 (166)
18 1rw3_A POL polyprotein; RNA an 98.1 2.4E-06 8.1E-11 88.5 5.3 88 43-160 167-257 (455)
19 2lsn_A Reverse transcriptase; 98.1 5E-06 1.7E-10 72.9 6.5 69 367-436 6-86 (165)
20 2zd1_B P51 RT; P51/P66, hetero 97.9 7.4E-06 2.5E-10 83.8 5.9 89 42-160 146-237 (428)
21 1xr5_A Genome polyprotein; RNA 93.9 0.079 2.7E-06 54.4 6.6 99 4-121 253-361 (466)
22 1ra6_A P3D, genome polyprotein 93.6 0.14 4.9E-06 52.4 7.8 102 3-122 252-363 (461)
23 3uqs_A RNA-dependent RNA polym 88.3 0.67 2.3E-05 48.0 6.5 102 4-121 262-377 (515)
24 3n6m_A RNA-dependent RNA polym 74.8 4.6 0.00016 41.0 6.5 101 3-120 252-362 (462)
25 1u09_A Polyprotein; protein-DN 61.0 14 0.00047 37.7 6.8 98 6-120 264-371 (476)
26 2ijd_1 Picornain 3C, RNA-direc 60.1 14 0.00047 39.3 6.7 100 4-121 436-545 (644)
27 2ckw_A RNA-directed RNA polyme 59.2 18 0.0006 37.3 7.3 98 10-121 268-383 (515)
28 1xr7_A Genome polyprotein; RNA 54.7 22 0.00075 36.0 7.0 98 4-121 254-361 (460)
29 1rw3_A POL polyprotein; RNA an 46.2 12 0.00041 37.9 3.4 67 367-436 345-421 (455)
30 3bso_A RNA dependent RNA polym 44.0 33 0.0011 35.2 6.4 79 28-121 285-377 (510)
31 1khv_A RNA-directed RNA polyme 43.7 52 0.0018 33.8 7.8 98 10-121 276-390 (516)
32 1go4_E MAD1 (mitotic arrest de 40.3 42 0.0014 25.8 4.7 35 93-127 28-64 (100)
33 1y63_A LMAJ004144AAA protein; 36.4 30 0.001 29.7 4.0 38 75-112 147-184 (184)
No 1
>3kyl_A Telomerase reverse transcriptase; reverse transcriptase; 2.70A {Tribolium castaneum} PDB: 3du5_A 3du6_A
Probab=99.43 E-value=9.7e-14 Score=138.05 Aligned_cols=103 Identities=14% Similarity=0.179 Sum_probs=78.6
Q ss_pred hhhhhCCC---CChHHHHHHHhcCCceEEEEECCeecccccccccCCCCCCchhHHHHHHHhhchhhhc----CCCceeE
Q psy3306 2 RQLHKWNL---RGHLPNFLFKYMDERSFKIRLNNSTLSQDFSNVCGIPQGGVASSTLFAIAINTITSYI----HPSLSSS 74 (535)
Q Consensus 2 ~~L~~~g~---~~~~~~~I~~~l~~r~~~v~~~~~~s~~~~~~~~GvpQGs~LSP~Lf~l~~~~l~~~~----~~~~~~~ 74 (535)
+.|+..+. ++.+.+||+.++..-- |+++|.. ...+.|+|||+||||+|.|+|++++.+.+ ..+..++
T Consensus 266 k~L~~~i~~IlDk~Il~LIkk~Lka~L--V~igGk~----y~qekGTPQGGVISPLLANIYLheLDkel~~~l~kd~~LV 339 (596)
T 3kyl_A 266 KLIQSIPTHLLDSEKKNFIVDHISNQF--VAFRRKI----YKWNHGLLQGDPLSGCLCELYMAFMDRLYFSNLDKDAFIH 339 (596)
T ss_dssp HHHTTSCTTTSCHHHHHHHHHHHHCEE--EESSSSE----EEECSSSCBTCTTHHHHHHHHHHHHHHHHSTTSCTTSEEE
T ss_pred HHHHhhccccccHHHHHHHHHHHhhCe--EEECCEE----EecCCcccCCcchhHHHHHHHHHHHHHHHHHhhccCceEE
Confidence 34555554 5677889998886532 6677744 46789999999999999999999998775 3467899
Q ss_pred EeecceEEEEecCChHHHHHHHHHHHHHHHHHHhhcCccccCCceeE
Q psy3306 75 LFVDDFAIFTRDKNKDLLISTMQESIDKLNHFSDQTGLYFSPQKTQC 121 (535)
Q Consensus 75 ~yADD~~i~~~~~~~~~~~~~l~~~l~~l~~w~~~~gl~ln~~Kt~~ 121 (535)
.||||+++++.+... +++.++.+..| +++|++||.+
T Consensus 340 RYADDFVIi~~Ske~------Aerfl~~Lkg~-----leLNpEKTrI 375 (596)
T 3kyl_A 340 RTVDDYFFCSPHPHK------VYDFELLIKGV-----YQVNPTKTRT 375 (596)
T ss_dssp ECSSEEEEEESCHHH------HHHHHHHHHHH-----SCEEEEEEEE
T ss_pred EEcCcEEEEECCHHH------HHHHHHHhhCc-----ceECchhcee
Confidence 999999999976543 55555555555 3999999986
No 2
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.22 E-value=3.3e-11 Score=128.32 Aligned_cols=74 Identities=20% Similarity=0.251 Sum_probs=59.8
Q ss_pred ccCCCCCCchhHHHHHHHhhchhhhcC---CCceeEEeecceEEEEecCChHHHHHHHHHHHHHHHHHHhhcCccccCCc
Q psy3306 42 VCGIPQGGVASSTLFAIAINTITSYIH---PSLSSSLFVDDFAIFTRDKNKDLLISTMQESIDKLNHFSDQTGLYFSPQK 118 (535)
Q Consensus 42 ~~GvpQGs~LSP~Lf~l~~~~l~~~~~---~~~~~~~yADD~~i~~~~~~~~~~~~~l~~~l~~l~~w~~~~gl~ln~~K 118 (535)
-..+|||-.-||.+|.-+|+.++..+. +++.+..|.||+.|.+... .++ ....++.+.+.++++||.+|++|
T Consensus 148 ~~~mPfGl~nap~~fq~~m~~il~~~~~~~~~~~v~~Y~DDIli~s~~~-~~e----h~~~l~~v~~~l~~~gl~l~~~K 222 (557)
T 2zd1_A 148 YNVLPQGWKGSPAIFQSSMTKILEPFAAQNPDIVIYQYMDDLYVGSDLE-IGQ----HRTKIEELRQHLLRWGLTTPDKK 222 (557)
T ss_dssp ESBCCTTCTTHHHHHHHHHHHHHHHHHHTCTTEEEEEETTEEEEEECSC-HHH----HHHHHHHHHHHHHTTTCCCCCSC
T ss_pred EEeeCCCCCCHHHHHHHHHHHHHHHhhhcCCCceEEEEecCEEEecCch-HHH----HHHHHHHHHHHHHHcCCccChhh
Confidence 456899999999999999999987654 4567899999999987532 222 44567777788889999999999
Q ss_pred ee
Q psy3306 119 TQ 120 (535)
Q Consensus 119 t~ 120 (535)
|+
T Consensus 223 c~ 224 (557)
T 2zd1_A 223 HQ 224 (557)
T ss_dssp CS
T ss_pred cC
Confidence 87
No 3
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.16 E-value=2.6e-10 Score=121.25 Aligned_cols=74 Identities=16% Similarity=0.197 Sum_probs=59.1
Q ss_pred ccCCCCCCchhHHHHHHHhhchhhhcC---CCceeEEeecceEEEEecCChHHHHHHHHHHHHHHHHHHhhcCccccCCc
Q psy3306 42 VCGIPQGGVASSTLFAIAINTITSYIH---PSLSSSLFVDDFAIFTRDKNKDLLISTMQESIDKLNHFSDQTGLYFSPQK 118 (535)
Q Consensus 42 ~~GvpQGs~LSP~Lf~l~~~~l~~~~~---~~~~~~~yADD~~i~~~~~~~~~~~~~l~~~l~~l~~w~~~~gl~ln~~K 118 (535)
-..+|||-.-||.+|.-+|+.++..+. +++.+..|.||+.|.+.. +.++ ....++.+.+.++++||.+|++|
T Consensus 146 ~~~mPfGl~napa~fq~~m~~il~~~~~~~~~~~v~~Y~DDIli~s~~-~~~e----h~~~l~~v~~~l~~~gl~l~~~K 220 (555)
T 1mu2_A 146 YKVLPQGWKGSPAIFQHTMRQVLEPFRKANKDVIIIQYMDDILIASDR-TDLE----HDRVVLQLKELLNGLGFSTPDEK 220 (555)
T ss_dssp ESBCCTTCTTHHHHHHHHHHHHHHHHHHHCTTSEEEEETTEEEEEECS-CHHH----HHHHHHHHHHHHHHTTCBCCSTT
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHHHHHhhCCCcEEEEEecceEEecCC-CHHH----HHHHHHHHHHHHHHcCCccCHHH
Confidence 456899999999999999999987654 467789999999998752 2222 44556677777888999999999
Q ss_pred ee
Q psy3306 119 TQ 120 (535)
Q Consensus 119 t~ 120 (535)
|.
T Consensus 221 ~~ 222 (555)
T 1mu2_A 221 FQ 222 (555)
T ss_dssp EE
T ss_pred hc
Confidence 84
No 4
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=98.76 E-value=9e-09 Score=89.18 Aligned_cols=74 Identities=19% Similarity=0.151 Sum_probs=57.9
Q ss_pred CCceEEEecCCCCCCCeeEEEEEcCCCeee--ee-cC--CC--CCCchHHHHHHHHHHHHHHHHcCCCcEEEecCCCC--
Q psy3306 366 KDHVKIFTDGSKNDLGVGCALTIPERNISK--RF-AL--NK--NASIFHAELLALLQSLITIKELGVNKALIITDSLM-- 436 (535)
Q Consensus 366 ~~~~~i~tDgS~~~~~~g~a~~~~~~~~~~--~~-~l--~~--~~s~~~aE~~ai~~al~~~~~~~~~~~~I~tDs~s-- 436 (535)
++.+.||||||+..+..|+|+++...+... +. .. +. .++++.||+.|++.||+.+.+.+. ++.|+|||+.
T Consensus 4 ~~~i~iytDGs~~~g~~G~G~vi~~~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~~~-~v~I~tDS~~i~ 82 (147)
T 2kq2_A 4 RTEYDVYTDGSYVNGQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQLGV-KIRILHDYAGIA 82 (147)
T ss_dssp TSCCEEECCCCCBTTBCEEEEEEEETTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHHTC-CCCBSSCCSTHH
T ss_pred CCeEEEEECCCCCCCCcEEEEEEEECCEEEEEEeccccccccccccHHHHHHHHHHHHHHHHHHCCC-eEEEEECcHHHH
Confidence 567899999999888899999887655432 22 22 22 369999999999999999877666 9999999987
Q ss_pred CCCC
Q psy3306 437 YPWK 440 (535)
Q Consensus 437 ~w~~ 440 (535)
.|..
T Consensus 83 ~w~~ 86 (147)
T 2kq2_A 83 FWAT 86 (147)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 4543
No 5
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=98.67 E-value=2.5e-08 Score=87.29 Aligned_cols=71 Identities=23% Similarity=0.288 Sum_probs=57.3
Q ss_pred CCceEEEecCCCCCCC-----eeEEEEEcCCCe-eeeecCCCCCCchHHHHHHHHHHHHHHHHcCCCcEEEecCCCC
Q psy3306 366 KDHVKIFTDGSKNDLG-----VGCALTIPERNI-SKRFALNKNASIFHAELLALLQSLITIKELGVNKALIITDSLM 436 (535)
Q Consensus 366 ~~~~~i~tDgS~~~~~-----~g~a~~~~~~~~-~~~~~l~~~~s~~~aE~~ai~~al~~~~~~~~~~~~I~tDs~s 436 (535)
.+.+.||||||+..++ +|+|+++.+... ..+..++..+|++.||+.|++.||+.+...+..++.|+|||+.
T Consensus 5 ~~~~~iytDGs~~~n~~~~~~aG~Gvv~~~~~~~~~~~~l~~~~tn~~aEl~A~~~aL~~~~~~~~~~v~i~tDS~~ 81 (154)
T 2qkb_A 5 GDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTNSMF 81 (154)
T ss_dssp TTEEEEEEEEEEETTTSSSCEEEEEEECSTTCTTCEEEECCSSCCHHHHHHHHHHHHHHHHHHTTCCEEEEEESCHH
T ss_pred CCeEEEEEccCcCCCCCCCCcEEEEEEEECCCceeEEeecCCCCchHHHHHHHHHHHHHHHHhCCCceEEEEECcHH
Confidence 4678999999986432 788888765432 3445565578999999999999999999877889999999986
No 6
>3fsi_A RT, reverse transcriptase domain; transferase/DNA MMLV RT, protein-DNA complex, drug-DNA complex; HET: OWL; 1.75A {Moloney murine leukemia virus} SCOP: e.8.1.2 PDB: 1d1u_A 1n4l_A* 1ztt_A 2fjv_A* 2fjw_A 2fjx_A* 2fvp_A 2fvq_A 2fvr_A 2fvs_A 2r2r_A* 2r2s_A* 2r2t_A* 2r2u_A* 1ztw_A* 1i6j_A 1qaj_A* 1d0e_A* 1nnd_A 1mml_A ...
Probab=98.51 E-value=1.2e-07 Score=90.31 Aligned_cols=88 Identities=25% Similarity=0.311 Sum_probs=72.9
Q ss_pred cCCCCCCchhHHHHHHHhhchhhhcC---CCceeEEeecceEEEEecCChHHHHHHHHHHHHHHHHHHhhcCccccCCce
Q psy3306 43 CGIPQGGVASSTLFAIAINTITSYIH---PSLSSSLFVDDFAIFTRDKNKDLLISTMQESIDKLNHFSDQTGLYFSPQKT 119 (535)
Q Consensus 43 ~GvpQGs~LSP~Lf~l~~~~l~~~~~---~~~~~~~yADD~~i~~~~~~~~~~~~~l~~~l~~l~~w~~~~gl~ln~~Kt 119 (535)
.-+|||-.-||.+|.-+|+.++..+. +++.+..|+||+.|.+.+... ..+.++.+.++++++||.+|++||
T Consensus 163 ~~mPfGl~~sP~~fq~~m~~il~~~~~~~~~~~v~~Y~DDili~s~~~ee------h~~~l~~v~~~L~~~gl~l~~~Kc 236 (255)
T 3fsi_A 163 TRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELD------CQQGTRALLQTLGNLGYRASAKKA 236 (255)
T ss_dssp SBCCTTCTTHHHHHHHHHHHHTHHHHHHCTTCEEEEETTEEEEEESSHHH------HHHHHHHHHHHHHHHTCCBCTTTC
T ss_pred EEeCCCCCCcHHHHHHHHHHHHHHHHHhCcCcEEEEEcCCeEEEeCCHHH------HHHHHHHHHHHHHHCCeEECHHHh
Confidence 34699999999999999999987653 566789999999998766433 566788888899999999999999
Q ss_pred eEEEecccCcCCCCCceeeecCeeeeeeccccceeeEeccc
Q psy3306 120 QCVLFSRKYKQNNIAVNLTMYDSRIEVVDQFRFLGLTFDKK 160 (535)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~g~~I~~~~~~kyLGv~i~~~ 160 (535)
+.. +.+++|||..++.+
T Consensus 237 ~f~------------------------~~~~~fLG~~i~~~ 253 (255)
T 3fsi_A 237 QIC------------------------QKQVKYLGYLLKEG 253 (255)
T ss_dssp EEE------------------------ESEEEETTEEEETT
T ss_pred ccc------------------------CCceEEEEEEEeCC
Confidence 864 24679999999765
No 7
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=98.48 E-value=1.5e-07 Score=82.73 Aligned_cols=66 Identities=27% Similarity=0.192 Sum_probs=52.6
Q ss_pred ceEEEecCCCC--CCCeeEEEEEcCCCeee-eecCCCCCCchHHHHHHHHHHHHHHHHcCCCcEEEecCCCC
Q psy3306 368 HVKIFTDGSKN--DLGVGCALTIPERNISK-RFALNKNASIFHAELLALLQSLITIKELGVNKALIITDSLM 436 (535)
Q Consensus 368 ~~~i~tDgS~~--~~~~g~a~~~~~~~~~~-~~~l~~~~s~~~aE~~ai~~al~~~~~~~~~~~~I~tDs~s 436 (535)
.+.||||||+. +|..|+|+++...+... ...++..+|++.||+.|++.||+.+ ...++.|+|||+.
T Consensus 23 ~i~iytDGs~~~npG~~g~G~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~---~~~~v~I~tDS~~ 91 (165)
T 3p1g_A 23 DYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMA---EGKKLNVYTDSRY 91 (165)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEECTTCCHHHHHHHHHHHHHHHT---BTSEEEEEECCHH
T ss_pred CEEEEEEcccCCCCCceEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHc---cCceEEEEEchHH
Confidence 58999999985 56688888776654432 2245667899999999999999998 3689999999975
No 8
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=98.46 E-value=6.9e-08 Score=80.72 Aligned_cols=70 Identities=14% Similarity=-0.072 Sum_probs=52.0
Q ss_pred CCceEEEecCCCCC--CCeeEEEEEcCCCeeeeecCC-CCCCchHHHHHHHHHHHHHHHHcCCCcEEEecCCCC
Q psy3306 366 KDHVKIFTDGSKND--LGVGCALTIPERNISKRFALN-KNASIFHAELLALLQSLITIKELGVNKALIITDSLM 436 (535)
Q Consensus 366 ~~~~~i~tDgS~~~--~~~g~a~~~~~~~~~~~~~l~-~~~s~~~aE~~ai~~al~~~~~~~~~~~~I~tDs~s 436 (535)
+....||||||+.. |..|.|+|+...+.......+ ..+||+.||+.|++.||+.+.+.+.. +.|+|||+-
T Consensus 3 p~~~~iytDGac~GNPGp~G~ggV~~~~g~~~~~~g~~~~tTNN~aEl~A~i~aL~~l~~~~~~-v~i~tDSqy 75 (134)
T 4htu_A 3 IIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSR-KPIYSNSQT 75 (134)
T ss_dssp CCSSSEEEEEEEETTTEEEEEEEEETTTCCEEEEEEEEEEECHHHHHHHHHHHHHHHHHHTTCC-CCEEESCHH
T ss_pred ccceEEEEeeccCCCCCCeEEEEEEEECCEEEEEecCCCCCchHHHHHHHHHHHHHHHHhCCCC-EEEEcchHH
Confidence 45678999999854 458886666555433222221 26899999999999999999886544 899999998
No 9
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=98.46 E-value=1.5e-07 Score=80.86 Aligned_cols=68 Identities=24% Similarity=0.241 Sum_probs=54.3
Q ss_pred ceEEEecCCCCC--CCeeEEEEEcCCC--e-e--eeecCCCCCCchHHHHHHHHHHHHHHHHcCCCcEEEecCCCC
Q psy3306 368 HVKIFTDGSKND--LGVGCALTIPERN--I-S--KRFALNKNASIFHAELLALLQSLITIKELGVNKALIITDSLM 436 (535)
Q Consensus 368 ~~~i~tDgS~~~--~~~g~a~~~~~~~--~-~--~~~~l~~~~s~~~aE~~ai~~al~~~~~~~~~~~~I~tDs~s 436 (535)
.+.||||||... +..|+|+++.+.+ . . ....+ ..+|++.||+.|++.||+.+.+.+..++.|+|||+.
T Consensus 3 ~~~iy~DGs~~~~~g~~g~G~v~~~~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~a~~~~~~~v~i~tDS~~ 77 (141)
T 3hst_B 3 KVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAI-GRATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKL 77 (141)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEETTSCSEEEEEEEEE-EEECHHHHHHHHHHHHHHHHHHHTCSEEEEEESCHH
T ss_pred EEEEEEecCCCCCCCCcEEEEEEEeCCCCcEEEeeeccC-CCCchHHHHHHHHHHHHHHHHHCCCceEEEEeChHH
Confidence 478999999864 4588998886542 2 1 12222 368999999999999999999988899999999988
No 10
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=98.43 E-value=3.3e-07 Score=79.57 Aligned_cols=68 Identities=24% Similarity=0.225 Sum_probs=54.3
Q ss_pred eEEEecCCCC---CCCeeE-EEEEcCCCeee---eecCC---CCCCchHHHHHHHHHHHHHHHHcCCCcEEEecCCCC
Q psy3306 369 VKIFTDGSKN---DLGVGC-ALTIPERNISK---RFALN---KNASIFHAELLALLQSLITIKELGVNKALIITDSLM 436 (535)
Q Consensus 369 ~~i~tDgS~~---~~~~g~-a~~~~~~~~~~---~~~l~---~~~s~~~aE~~ai~~al~~~~~~~~~~~~I~tDs~s 436 (535)
+.+|||||.. ++..|+ |+++.+.+... ...++ ...|++.||+.|++.||+.+...+..++.|+|||+.
T Consensus 2 ~~iy~DGs~~~~n~g~~G~~G~vi~~~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~g~~~v~i~tDS~~ 79 (149)
T 2ehg_A 2 IIGYFDGLCEPKNPGGIATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRLGISSPIIKGDSQL 79 (149)
T ss_dssp CEEEEEEEEESSSSSSEEEEEEEEECSSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHHTCCSCEEEESCHH
T ss_pred EEEEEeeccCCCCCChheEEEEEEEECCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEEEeChHH
Confidence 5799999986 356886 88887654432 22233 378999999999999999999888889999999998
No 11
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=98.41 E-value=1.4e-07 Score=80.46 Aligned_cols=70 Identities=14% Similarity=-0.061 Sum_probs=54.8
Q ss_pred CCceEEEecCCCCC--CCeeEEEEEcCCCeeeeecCC-CCCCchHHHHHHHHHHHHHHHHcCCCcEEEecCCCC
Q psy3306 366 KDHVKIFTDGSKND--LGVGCALTIPERNISKRFALN-KNASIFHAELLALLQSLITIKELGVNKALIITDSLM 436 (535)
Q Consensus 366 ~~~~~i~tDgS~~~--~~~g~a~~~~~~~~~~~~~l~-~~~s~~~aE~~ai~~al~~~~~~~~~~~~I~tDs~s 436 (535)
+..+.||||||+.. |..|+|+++...+.......+ ..+|++.||+.|++.||+.+.+... ++.|+|||+-
T Consensus 9 ~~~~~iy~DGa~~gNpG~~G~G~vl~~~g~~~~~~~~~~~~TNN~aEl~A~i~aL~~~~~~~~-~v~i~tDS~~ 81 (142)
T 1zbf_A 9 IIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNS-RKPIYSNSQT 81 (142)
T ss_dssp CCSSSEEEEEEECSSSEEEEEEEEETTTCCEEEECCCEEEECHHHHHHHHHHHHHHHHHHTTC-CCCEEESCHH
T ss_pred CCeEEEEEeeccCCCCCCeEEEEEEEeCCEEEEEecccCCcCcHHHHHHHHHHHHHHHHhCCC-eEEEEEehHH
Confidence 45678999999854 458899988754443322222 2579999999999999999998766 9999999998
No 12
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=98.40 E-value=1.2e-07 Score=82.13 Aligned_cols=68 Identities=21% Similarity=0.262 Sum_probs=52.5
Q ss_pred CceEEEecCCCCC--CCeeEEEEEcCCCeeeeecC-CCCCCchHHHHHHHHHHHHHHHHcCCCcEEEecCCCC
Q psy3306 367 DHVKIFTDGSKND--LGVGCALTIPERNISKRFAL-NKNASIFHAELLALLQSLITIKELGVNKALIITDSLM 436 (535)
Q Consensus 367 ~~~~i~tDgS~~~--~~~g~a~~~~~~~~~~~~~l-~~~~s~~~aE~~ai~~al~~~~~~~~~~~~I~tDs~s 436 (535)
+.+.||||||+.. +..|+|+++...+....... ...+|++.||+.|++.||+.+.+ ..++.|+|||+.
T Consensus 3 ~~i~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~~~~~~~Tnn~aEl~A~~~AL~~~~~--~~~v~I~tDS~~ 73 (146)
T 3h08_A 3 KTITIYTDGAASGNPGKGGWGALLMYGSSRKEISGYDPATTNNRMELMAAIKGLEALKE--PARVQLYSDSAY 73 (146)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHTCSS--CCEEEEEESCHH
T ss_pred ceEEEEEecCCCCCCCceEEEEEEEECCeeEEeecCCCCCcHHHHHHHHHHHHHHhcCc--cCcEEEEeChHH
Confidence 4689999999865 34888988876553322211 23589999999999999999875 578999999995
No 13
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=98.39 E-value=1.7e-07 Score=80.36 Aligned_cols=68 Identities=21% Similarity=0.276 Sum_probs=53.2
Q ss_pred ceEEEecCCCCC--CCeeEEEEEcCC-Cee---eeecCCCCCCchHHHHHHHHHHHHHHHHcCCC----cEEEecCCCC
Q psy3306 368 HVKIFTDGSKND--LGVGCALTIPER-NIS---KRFALNKNASIFHAELLALLQSLITIKELGVN----KALIITDSLM 436 (535)
Q Consensus 368 ~~~i~tDgS~~~--~~~g~a~~~~~~-~~~---~~~~l~~~~s~~~aE~~ai~~al~~~~~~~~~----~~~I~tDs~s 436 (535)
.+.||||||... +..|+|+++.+. +.. ....+ ..+|++.||+.|++.||+.+.+.+.. ++.|+|||+.
T Consensus 3 ~~~iy~DGs~~~n~g~~G~G~v~~~~~g~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~a~~~~~~~~~~~v~i~tDS~~ 80 (140)
T 3u3g_D 3 KIIIYTDGGARGNPGPAGIGVVITDEKGNTLHESSAYI-GETTNNVAEYEALIRALEDLQMFGDKLVDMEVEVRMDSEL 80 (140)
T ss_dssp EEEEEEEEEESSTTEEEEEEEEEECTTSCEEEEEEEEE-EEECHHHHHHHHHHHHHHHHGGGGGGGTTCEEEEEESCHH
T ss_pred eEEEEEecCCCCCCCCcEEEEEEEeCCCCEEEEEEeeC-CCCchHHHHHHHHHHHHHHHHHcCCCCCCceEEEEeChHH
Confidence 579999999864 458999988663 221 22222 34799999999999999999886666 9999999998
No 14
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=98.30 E-value=8.3e-07 Score=76.85 Aligned_cols=65 Identities=20% Similarity=0.144 Sum_probs=51.3
Q ss_pred CCceEEEecCCCCC--CCeeEEEEEcCCCeeeeecCCCCCCchHHHHHHHHHHHHHHHHcCCCcEEEecCCCC
Q psy3306 366 KDHVKIFTDGSKND--LGVGCALTIPERNISKRFALNKNASIFHAELLALLQSLITIKELGVNKALIITDSLM 436 (535)
Q Consensus 366 ~~~~~i~tDgS~~~--~~~g~a~~~~~~~~~~~~~l~~~~s~~~aE~~ai~~al~~~~~~~~~~~~I~tDs~s 436 (535)
++.+.||||||+.. +..|+|+++..+.. ....+ ..+|++.||+.|++.||+.+ ..++.|+|||+.
T Consensus 10 ~~~~~iytDGs~~~n~g~~g~G~v~~~~~~-~~~~~-~~~Tnn~aEl~A~i~AL~~~----~~~v~i~tDS~~ 76 (150)
T 3qio_A 10 VGAETFYVDGAANRETKLGKAGYVTNRGRQ-KVVTL-TDTTNQKTELQAIYLALQDS----GLEVNIVTDSQY 76 (150)
T ss_dssp TTCEEEEEEEEECTTTCCEEEEEEETTSCE-EEEEE-SSCCHHHHHHHHHHHHHHHS----CSEEEEEESCHH
T ss_pred CCCEEEEEccCCCCCCCCeEEEEEEEcCCE-EEEeC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeCcHH
Confidence 56799999999754 44788888876543 22333 47899999999999999985 488999999997
No 15
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=98.28 E-value=2.9e-07 Score=80.64 Aligned_cols=67 Identities=27% Similarity=0.279 Sum_probs=51.2
Q ss_pred CceEEEecCCCCC--CCeeEEEEEcCCCeeee--ecCCCCCCchHHHHHHHHHHHHHHHHcCCCcEEEecCCCC
Q psy3306 367 DHVKIFTDGSKND--LGVGCALTIPERNISKR--FALNKNASIFHAELLALLQSLITIKELGVNKALIITDSLM 436 (535)
Q Consensus 367 ~~~~i~tDgS~~~--~~~g~a~~~~~~~~~~~--~~l~~~~s~~~aE~~ai~~al~~~~~~~~~~~~I~tDs~s 436 (535)
..+.||||||+.. +..|+|+++...+.... ..+ ...|++.||+.|++.||+.+.. ..++.|+|||+.
T Consensus 5 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~AL~~~~~--~~~v~I~tDS~~ 75 (158)
T 2e4l_A 5 KLIHIFTDGSCLGNPGPGGYGIVMNYKGHTKEMSDGF-SLTTNNRMELLAPIVALEALKE--PCKIILTSDSQY 75 (158)
T ss_dssp CEEEEEEEEEESSSSEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCSS--CCEEEEEECCHH
T ss_pred CeEEEEEcccccCCCCcEEEEEEEEECCEEEEEecCc-CCCccHHHHHHHHHHHHHHhcc--CCeEEEEeCHHH
Confidence 4689999999864 45888988865543222 222 3579999999999999999854 378999999976
No 16
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=98.28 E-value=3e-07 Score=80.34 Aligned_cols=66 Identities=27% Similarity=0.283 Sum_probs=51.3
Q ss_pred ceEEEecCCCCC--CCeeEEEEEcCCCeee--eecCCCCCCchHHHHHHHHHHHHHHHHcCCCcEEEecCCCC
Q psy3306 368 HVKIFTDGSKND--LGVGCALTIPERNISK--RFALNKNASIFHAELLALLQSLITIKELGVNKALIITDSLM 436 (535)
Q Consensus 368 ~~~i~tDgS~~~--~~~g~a~~~~~~~~~~--~~~l~~~~s~~~aE~~ai~~al~~~~~~~~~~~~I~tDs~s 436 (535)
.+.||||||+.. +..|+|+++...+... +..+ ...|++.||+.|++.||+.+.. ..++.|+|||+.
T Consensus 4 ~~~iytDGs~~~n~~~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~~~~--~~~v~I~tDS~~ 73 (155)
T 1jl1_A 4 QVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGY-TRTTNNRMELMAAIVALEALKE--HAEVILSTDSQY 73 (155)
T ss_dssp CEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCCS--CCEEEEEECCHH
T ss_pred eEEEEEccccCCCCCceEEEEEEEECCeEEEEecCC-CCCcHHHHHHHHHHHHHHHhCc--CCcEEEEeCHHH
Confidence 578999999864 3488898886554322 2222 3578999999999999999875 378999999998
No 17
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=98.18 E-value=5.2e-07 Score=79.67 Aligned_cols=68 Identities=25% Similarity=0.180 Sum_probs=51.1
Q ss_pred CceEEEecCCCCC--CCeeEEEEEcCCCeeeeecC-CCCCCchHHHHHHHHHHHHHHHHcCCCcEEEecCCCC
Q psy3306 367 DHVKIFTDGSKND--LGVGCALTIPERNISKRFAL-NKNASIFHAELLALLQSLITIKELGVNKALIITDSLM 436 (535)
Q Consensus 367 ~~~~i~tDgS~~~--~~~g~a~~~~~~~~~~~~~l-~~~~s~~~aE~~ai~~al~~~~~~~~~~~~I~tDs~s 436 (535)
..+.||||||+.. +..|+|+++...+....... ...+|++.||+.|++.||+.+... .++.|+|||+.
T Consensus 7 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~~--~~v~I~tDS~~ 77 (166)
T 1ril_A 7 KRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGLKALKEP--CEVDLYTDSHY 77 (166)
T ss_dssp CCCCEEEEEEESSTTEEEEEEEEECBTTBCCEECCEEEEECHHHHHHHHHHHHHHSCCSC--CEEEEECCCHH
T ss_pred ccEEEEECccccCCCCCEEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHhccC--CeEEEEeChHH
Confidence 4689999999864 34888988865433222221 135799999999999999987653 58999999986
No 18
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=98.07 E-value=2.4e-06 Score=88.54 Aligned_cols=88 Identities=25% Similarity=0.311 Sum_probs=70.7
Q ss_pred cCCCCCCchhHHHHHHHhhchhhhcC---CCceeEEeecceEEEEecCChHHHHHHHHHHHHHHHHHHhhcCccccCCce
Q psy3306 43 CGIPQGGVASSTLFAIAINTITSYIH---PSLSSSLFVDDFAIFTRDKNKDLLISTMQESIDKLNHFSDQTGLYFSPQKT 119 (535)
Q Consensus 43 ~GvpQGs~LSP~Lf~l~~~~l~~~~~---~~~~~~~yADD~~i~~~~~~~~~~~~~l~~~l~~l~~w~~~~gl~ln~~Kt 119 (535)
.-+|||-.-||.+|.-+|+.++..+. .+..+..|+||++|.+.+... ..+.++.+.+-+++.||.+|++||
T Consensus 167 ~~mpfGl~naP~~fq~~m~~~l~~~~~~~~~~~v~~YvDDili~s~~~~e------~~~~l~~v~~~l~~~gl~l~~~K~ 240 (455)
T 1rw3_A 167 TRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELD------CQQGTRALLQTLGNLGYRASAKKA 240 (455)
T ss_dssp SBCCSSCTTHHHHHHHHHHHHHHHHHHTCTTCEEEEETTEEEEEESSHHH------HHHHHHHHHHHHHHHTCCBCGGGC
T ss_pred EecCCCCCCcHHHHHHHHHHHHHHhhhhCCCceEEEEcCCEEEecCCHHH------HHHHHHHHHHHHHHcCCccCccch
Confidence 45899999999999999999887653 467789999999998776433 455667777778888999999999
Q ss_pred eEEEecccCcCCCCCceeeecCeeeeeeccccceeeEeccc
Q psy3306 120 QCVLFSRKYKQNNIAVNLTMYDSRIEVVDQFRFLGLTFDKK 160 (535)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~g~~I~~~~~~kyLGv~i~~~ 160 (535)
+.. ..+++|||..++..
T Consensus 241 ~f~------------------------~~~~~fLG~~i~~~ 257 (455)
T 1rw3_A 241 QIC------------------------QKQVKYLGYLLKEG 257 (455)
T ss_dssp CCS------------------------BSSCEETTEEESSS
T ss_pred hhh------------------------ccceeEeeeeccCC
Confidence 852 25679999999865
No 19
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=98.07 E-value=5e-06 Score=72.88 Aligned_cols=69 Identities=20% Similarity=0.190 Sum_probs=49.7
Q ss_pred CceEEEecCCCCC--CC-----eeEEEEEcCCCe----eeeecC-CCCCCchHHHHHHHHHHHHHHHHcCCCcEEEecCC
Q psy3306 367 DHVKIFTDGSKND--LG-----VGCALTIPERNI----SKRFAL-NKNASIFHAELLALLQSLITIKELGVNKALIITDS 434 (535)
Q Consensus 367 ~~~~i~tDgS~~~--~~-----~g~a~~~~~~~~----~~~~~l-~~~~s~~~aE~~ai~~al~~~~~~~~~~~~I~tDs 434 (535)
..+.||||||+.. |+ .|+|+++...+. ...+.. ....++..||+.|+..|++.+...+ .++.|+|||
T Consensus 6 ~evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~Aei~Al~~al~~al~~~-~~v~I~TDS 84 (165)
T 2lsn_A 6 YEGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALKIP-GPVLVITDS 84 (165)
T ss_dssp CSEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHSS-SCEEEEESC
T ss_pred ceEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccCCchHHHHHHHHHHHHHHHHHHHhcCC-CeEEEEeCh
Confidence 4578999999853 33 788988754322 223333 3467888899999999998876643 579999999
Q ss_pred CC
Q psy3306 435 LM 436 (535)
Q Consensus 435 ~s 436 (535)
+-
T Consensus 85 ~Y 86 (165)
T 2lsn_A 85 FY 86 (165)
T ss_dssp HH
T ss_pred HH
Confidence 87
No 20
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=97.94 E-value=7.4e-06 Score=83.83 Aligned_cols=89 Identities=19% Similarity=0.268 Sum_probs=60.7
Q ss_pred ccCCCCCCchhHHHHHHHhhchhhhcC---CCceeEEeecceEEEEecCChHHHHHHHHHHHHHHHHHHhhcCccccCCc
Q psy3306 42 VCGIPQGGVASSTLFAIAINTITSYIH---PSLSSSLFVDDFAIFTRDKNKDLLISTMQESIDKLNHFSDQTGLYFSPQK 118 (535)
Q Consensus 42 ~~GvpQGs~LSP~Lf~l~~~~l~~~~~---~~~~~~~yADD~~i~~~~~~~~~~~~~l~~~l~~l~~w~~~~gl~ln~~K 118 (535)
-..+|||-..||.+|.-+|+.++..+. +++.+..|+||+.|.+.+. .++ ....++.+.+-+++.||.+|++|
T Consensus 146 ~~vmPfGl~nsPa~fq~~m~~il~~~~~~~~~~~v~vY~DDIlI~s~~~-~~e----h~~~l~~v~~~l~~~gL~l~~~K 220 (428)
T 2zd1_B 146 YNVLPQGWKGSPAIFQSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLE-IGQ----HRTKIEELRQHLLRWGLTTPDKK 220 (428)
T ss_dssp ESBCCTTCTHHHHHHHHHHHHHHHHHHHHCTTCEEEEETTEEEEEECSC-HHH----HHHHHHHHHHHHHHHHC------
T ss_pred EEeeCCCCcchHHHHHHHHHHHHHHHhhcCCCceEEEEecceEEecCCc-HHH----HHHHHHHHHHHHHHhCCccChhH
Confidence 356899999999999999999987653 4667899999999988643 222 45566667777788999999999
Q ss_pred eeEEEecccCcCCCCCceeeecCeeeeeeccccceeeEeccc
Q psy3306 119 TQCVLFSRKYKQNNIAVNLTMYDSRIEVVDQFRFLGLTFDKK 160 (535)
Q Consensus 119 t~~~~~~~~~~~~~~~~~~~~~g~~I~~~~~~kyLGv~i~~~ 160 (535)
|+.. .+++|||..++++
T Consensus 221 c~~~-------------------------~~~~fLG~~i~~~ 237 (428)
T 2zd1_B 221 HQKE-------------------------PPFLWMGYELHPD 237 (428)
T ss_dssp -------------------------------CTTCCEEECGG
T ss_pred cccc-------------------------ceEEEeccEecCC
Confidence 8731 2368999999765
No 21
>1xr5_A Genome polyprotein; RNA-dependent RNA polymerase, transferase; 2.80A {Human rhinovirus 14} SCOP: e.8.1.4
Probab=93.87 E-value=0.079 Score=54.44 Aligned_cols=99 Identities=18% Similarity=0.269 Sum_probs=65.8
Q ss_pred hhhCCCCChHHHHHHHhcCCceEEEEECCeecccccccccCCCCC----CchhHHHHHHHhhchhhhc----C-CCceeE
Q psy3306 4 LHKWNLRGHLPNFLFKYMDERSFKIRLNNSTLSQDFSNVCGIPQG----GVASSTLFAIAINTITSYI----H-PSLSSS 74 (535)
Q Consensus 4 L~~~g~~~~~~~~I~~~l~~r~~~v~~~~~~s~~~~~~~~GvpQG----s~LSP~Lf~l~~~~l~~~~----~-~~~~~~ 74 (535)
|+..++++. +++..+.. + .+..+| ..+.+..|+|+| +++..++-++++....... . ..+.++
T Consensus 253 l~~~~~~~~--~l~~~l~~-~--~~~~~g----~v~~~~~G~PSG~p~Tsi~NSi~n~i~i~~a~~~~~~~~~~~~~~~~ 323 (466)
T 1xr5_A 253 LTKLGFAGS--SLIQSICN-T--HHIFRD----EIYVVEGGMPSGCSGTSIFNSMINNIIIRTLILDAYKGIDLDKLKIL 323 (466)
T ss_dssp HHHHTCTTT--THHHHHHS-E--EEECSS----SEEEEESCCCTTSSSHHHHHHHHHHHHHHHHHHHHCSSCCGGGCEEE
T ss_pred HHHcCCChH--HHHHHhhC-c--EEEECC----EEEEEeCcCCCCCCchhchhhHHHHHHHHHHHHHHhcCCCccceEEE
Confidence 455677764 45555553 2 345566 445889999999 5556666666665543321 1 246789
Q ss_pred EeecceEEEEecCChHHHHHHHHHHHHHHHHHHhhcCccccC-CceeE
Q psy3306 75 LFVDDFAIFTRDKNKDLLISTMQESIDKLNHFSDQTGLYFSP-QKTQC 121 (535)
Q Consensus 75 ~yADD~~i~~~~~~~~~~~~~l~~~l~~l~~w~~~~gl~ln~-~Kt~~ 121 (535)
.|.||.++-....-. .+.+.+.+.+.||.+++ +||+.
T Consensus 324 ~yGDD~iis~~~~~~----------~~~l~~~~~~~Gl~~t~~dKt~~ 361 (466)
T 1xr5_A 324 AYGDDLIVSYPYELD----------PQVLATLGKNYGLTITPPDKSET 361 (466)
T ss_dssp EETTEEEEECSSCCC----------HHHHHHHHTTTTCCEECCSSCSS
T ss_pred EECCCCCceeCCCCC----------HHHHHHHHHHcCCccChhhhcCC
Confidence 999999998765421 34555667789999999 89984
No 22
>1ra6_A P3D, genome polyprotein; nucleotidyltransferase, RNA-dependent, polym terminus, transferase; 2.00A {Human poliovirus 1} SCOP: e.8.1.4 PDB: 1ra7_A* 2ily_A* 2ilz_A* 2im0_A* 2im1_A* 2im2_A* 2im3_A* 2ijf_A 3ol9_A* 3ol7_A 3ol8_A 3ol6_A* 3ola_A* 3olb_A* 1tql_A 1rdr_A 1raj_A 3ddk_A 3cdu_A 3cdw_A
Probab=93.55 E-value=0.14 Score=52.40 Aligned_cols=102 Identities=17% Similarity=0.210 Sum_probs=67.4
Q ss_pred hhhhCCCCChHHHHHHHhcCCceEEEEECCeecccccccccCCCCCCch----hHHHHHHHhhchhhhc----C-CCcee
Q psy3306 3 QLHKWNLRGHLPNFLFKYMDERSFKIRLNNSTLSQDFSNVCGIPQGGVA----SSTLFAIAINTITSYI----H-PSLSS 73 (535)
Q Consensus 3 ~L~~~g~~~~~~~~I~~~l~~r~~~v~~~~~~s~~~~~~~~GvpQGs~L----SP~Lf~l~~~~l~~~~----~-~~~~~ 73 (535)
.|.+.++++. ..++..+.. + .+..+|. .+.+..|.|+|+|. ..++-++++.-..... . ..+.+
T Consensus 252 il~~~~~~~~-~~l~~~l~~-~--~~~~~g~----v~~~~~G~PSG~p~Tsv~NSl~n~i~~~~~~~~~~~~~~~~~~~~ 323 (461)
T 1ra6_A 252 VLEKIGFGDR-VDYIDYLNH-S--HHLYKNK----TYXVKGGMPSGXSGTSIFNSMINNLIIRTLLLKTYKGIDLDHLKM 323 (461)
T ss_dssp HHHHTTTGGG-THHHHHHHE-E--EEEETTE----EEEEESCCCTBSTTHHHHHHHHHHHHHHHHHHHHSTTCCGGGCEE
T ss_pred HHHHhCCCcH-HHHHHhhcC-e--EEEECCE----EEEEEeecCCCCCeeeeehHHHHHHHHHHHHHHcCCCCCCceEEE
Confidence 3566777776 667777654 2 3556774 45889999999554 5555555555433221 1 24678
Q ss_pred EEeecceEEEEecCChHHHHHHHHHHHHHHHHHHhhcCccccC-CceeEE
Q psy3306 74 SLFVDDFAIFTRDKNKDLLISTMQESIDKLNHFSDQTGLYFSP-QKTQCV 122 (535)
Q Consensus 74 ~~yADD~~i~~~~~~~~~~~~~l~~~l~~l~~w~~~~gl~ln~-~Kt~~~ 122 (535)
+.|.||.++-....-. .+.+.+.+.+.||++++ +||..+
T Consensus 324 ~~yGDD~i~~~~~~~~----------~~~l~~~~~~~Gl~~t~~dKt~~~ 363 (461)
T 1ra6_A 324 IAYGDDVIASYPHEVD----------ASLLAQSGKDYGLTMTPADKSATF 363 (461)
T ss_dssp EEETTEEEEEESSCCC----------HHHHHHHHHHTTCCEESTTTCSSC
T ss_pred EecCCceEEEeccccC----------HHHHHHHHHHcCceecccccCCCC
Confidence 8999999998765432 34566667789999996 798753
No 23
>3uqs_A RNA-dependent RNA polymerase; transferase; 2.00A {Murine norovirus} PDB: 3ur0_A* 3upf_A* 3sfg_A* 3nah_A 3nai_A 3qid_A* 3sfu_A*
Probab=88.33 E-value=0.67 Score=47.97 Aligned_cols=102 Identities=13% Similarity=0.130 Sum_probs=63.2
Q ss_pred hhhCCCCChHHHHHH-HhcCCceEEEEECCeecccccccccCCCCCCchhHHHHHH----Hhhchhhh---cC-----CC
Q psy3306 4 LHKWNLRGHLPNFLF-KYMDERSFKIRLNNSTLSQDFSNVCGIPQGGVASSTLFAI----AINTITSY---IH-----PS 70 (535)
Q Consensus 4 L~~~g~~~~~~~~I~-~~l~~r~~~v~~~~~~s~~~~~~~~GvpQGs~LSP~Lf~l----~~~~l~~~---~~-----~~ 70 (535)
|.++..++.+.+++. +++.. ..+..+| ..+.+..|.|.|+|.--++=++ ++...... +. ..
T Consensus 262 l~~~~~~~~~~~~~~~~Ll~~--s~~~~~g----~v~~v~gG~PSG~p~Tsi~NSi~n~i~~~~a~~~~~g~~~~~f~~~ 335 (515)
T 3uqs_A 262 MVRLSPEPDLARVVMDDLLAP--SLLDVGD----YKIVVEEGLPSGCPCTTQLNSLAHWILTLCAMVEVTRVDPDIVMQE 335 (515)
T ss_dssp HHHTSSSHHHHHHHHHHHHSC--EEEECSS----EEEEECSSCCCCSTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHT
T ss_pred HHHhccCCHHHHHHHHHhhcC--ceEEECC----EEEEEcCCccCCCcceeeEchHHHHHHHHHHHHHhcCCCHHHhhhh
Confidence 455556666655544 55533 2345676 3458899999997764443333 33322221 11 23
Q ss_pred ceeEEeecceEEEEecCChHHHHHHHHHHHHHHHHHHhhcCccccC-CceeE
Q psy3306 71 LSSSLFVDDFAIFTRDKNKDLLISTMQESIDKLNHFSDQTGLYFSP-QKTQC 121 (535)
Q Consensus 71 ~~~~~yADD~~i~~~~~~~~~~~~~l~~~l~~l~~w~~~~gl~ln~-~Kt~~ 121 (535)
+.++.|-||.++-....- ..+.+.+.+.+.||++++ +||..
T Consensus 336 ~~~~~yGDD~i~sv~~~~----------~~~~l~~~~~~~Gl~~t~~dKt~~ 377 (515)
T 3uqs_A 336 SEFSFYGDDEVVSTNLEL----------DMVKYTMALRRYGLLPTRADKEEG 377 (515)
T ss_dssp EEEEEETTEEEEEESSCC----------CHHHHHHHHHHTTCCCCCTTCCSS
T ss_pred eEEEEeCCceEEEecccc----------CHHHHHHHHHHhCcEeccccccCC
Confidence 557899999998776432 234566677789999999 88863
No 24
>3n6m_A RNA-dependent RNA polymerase; EV71, RDRP, GTP, transferase; HET: GTP; 2.50A {Human enterovirus 71} SCOP: e.8.1.4 PDB: 3n6l_A* 3n6n_A*
Probab=74.76 E-value=4.6 Score=41.03 Aligned_cols=101 Identities=17% Similarity=0.169 Sum_probs=65.8
Q ss_pred hhhhCCCCChHHHHHHHhcCCceEEEEECCeecccccccccCCCCCCchhHHHHHHHhhchhh----h----cC-CCcee
Q psy3306 3 QLHKWNLRGHLPNFLFKYMDERSFKIRLNNSTLSQDFSNVCGIPQGGVASSTLFAIAINTITS----Y----IH-PSLSS 73 (535)
Q Consensus 3 ~L~~~g~~~~~~~~I~~~l~~r~~~v~~~~~~s~~~~~~~~GvpQGs~LSP~Lf~l~~~~l~~----~----~~-~~~~~ 73 (535)
.|.++|+++....++..+.. + .+..+|. .+.+..|.|-|+|.--++=+++..-+.. . +. ..+.+
T Consensus 252 il~~~~~~~~~~~l~~~l~~-~--~~~~~g~----v~~~~~G~PSG~p~Tsv~NSl~n~i~~~~a~~~~~~~~~~~~~~~ 324 (462)
T 3n6m_A 252 VLREIGYSEGAISLIEGINH-T--HHVYRNK----TYCVLGGMPSGCSGTSIFNSMINNIIIRALLIKTFKGIDLDELNM 324 (462)
T ss_dssp HHHHTTCCHHHHGGGHHHHE-E--EEEETTE----EEEEESSCCCSCSTTHHHHHHHHHHHHHHHHHHHSTTCCGGGCEE
T ss_pred HHHHhCCCcHHHHHHHHhhC-c--EEEeCCc----EEEEeCCcCCCCCccccchHHHHHHHHHHHHHHHcCCCCcceEEE
Confidence 35667887776556666653 2 3445774 4588999999999877655553332221 1 11 24678
Q ss_pred EEeecceEEEEecCChHHHHHHHHHHHHHHHHHHhhcCccccC-Ccee
Q psy3306 74 SLFVDDFAIFTRDKNKDLLISTMQESIDKLNHFSDQTGLYFSP-QKTQ 120 (535)
Q Consensus 74 ~~yADD~~i~~~~~~~~~~~~~l~~~l~~l~~w~~~~gl~ln~-~Kt~ 120 (535)
+.|=||.++-....- ..+.+.+.+.+.||.+++ +||.
T Consensus 325 ~~yGDD~i~s~~~~~----------~~~~l~~~~~~~Gl~~t~~dKt~ 362 (462)
T 3n6m_A 325 VAYGDDVLASYPFPI----------DCLELAKTGKEYGLTMTPADKSP 362 (462)
T ss_dssp EEETTEEEEEESSCC----------CHHHHHHHHHHTTCEEEESSSSS
T ss_pred EeecCceEEEeCccc----------CHHHHHHHHHHcCceechhhccC
Confidence 899999999876532 234556667788999987 4876
No 25
>1u09_A Polyprotein; protein-DNA complex, RNA-dependent RNA polymerase, foot and disease virus, transferase; 1.91A {Foot-and-mouth disease virus} SCOP: e.8.1.4 PDB: 1wne_A 2e9r_X* 2e9t_A* 2e9z_A* 2ec0_A 3kmq_A 3kms_A 3koa_A 3kna_A 3klv_A 3nky_A 3nma_A 2f8e_X* 2d7s_A* 3nl0_A
Probab=61.00 E-value=14 Score=37.71 Aligned_cols=98 Identities=14% Similarity=0.199 Sum_probs=60.0
Q ss_pred hCCCCChHHHHHHHhcCCceEEEEECCeecccccccccCCCCCCchhHHHHHHH----hhchhhhc----C-CCceeEEe
Q psy3306 6 KWNLRGHLPNFLFKYMDERSFKIRLNNSTLSQDFSNVCGIPQGGVASSTLFAIA----INTITSYI----H-PSLSSSLF 76 (535)
Q Consensus 6 ~~g~~~~~~~~I~~~l~~r~~~v~~~~~~s~~~~~~~~GvpQGs~LSP~Lf~l~----~~~l~~~~----~-~~~~~~~y 76 (535)
..|+++....++++++ ++ .+..+| ..+.+..|+|-|++.--++=+++ +......+ . ..+.+..|
T Consensus 264 ~~~~~~~~~~~l~~L~-~s--~~~~~g----~v~~~~~G~pSG~p~T~~~Nsl~n~~~~~~a~~~~~~~~~~~~~~~~~~ 336 (476)
T 1u09_A 264 EFGFHPNAEWILKTLV-NT--EHAYEN----KRITVEGGMPSGCSATSIINTILNNIYVLYALRRHYEGVELDTYTMISY 336 (476)
T ss_dssp GGTCCHHHHHHHHTTT-EE--EEEEEE----EEEEEESSCCTTCTTHHHHHHHHHHHHHHHHHHHHSSSCCGGGCEEEEE
T ss_pred ccCCCHHHHHHHHHhh-Cc--EEEECC----EEEEEeCcCCCCCcceecchHHHHHHHHHHHHHHHcCCCCccceeEEEE
Confidence 3466665555666554 32 233465 34568999999999865444432 22222111 1 13667899
Q ss_pred ecceEEEEecCChHHHHHHHHHHHHHHHHHHhhcCccccC-Ccee
Q psy3306 77 VDDFAIFTRDKNKDLLISTMQESIDKLNHFSDQTGLYFSP-QKTQ 120 (535)
Q Consensus 77 ADD~~i~~~~~~~~~~~~~l~~~l~~l~~w~~~~gl~ln~-~Kt~ 120 (535)
=||.++.....-. ++.+.+.+.+.|+.+++ +||.
T Consensus 337 GDD~i~~~~~~~~----------~~~~~~~~~~~Gl~~t~~dKt~ 371 (476)
T 1u09_A 337 GDDIVVASDYDLD----------FEALKPHFKSLGQTITPADKSD 371 (476)
T ss_dssp TTEEEEEESSCCC----------HHHHHHHHHTTTCCEEESCCSS
T ss_pred cCCeeeecCcccC----------HHHHHHHHHHcCcEeccccccc
Confidence 9999998754321 34566667789999884 6764
No 26
>2ijd_1 Picornain 3C, RNA-directed RNA polymerase; RNA-dependent RNA polymerase, picornavirus, protease, hydrolase, transferase; 3.40A {Human poliovirus 1} SCOP: b.47.1.4 e.8.1.4
Probab=60.11 E-value=14 Score=39.34 Aligned_cols=100 Identities=18% Similarity=0.225 Sum_probs=62.1
Q ss_pred hhhCCCCChHHHHHHHhcCCceEEEEECCeecccccccccCCCCCCchhHHHHHHHhhchhhh--------cC-CCceeE
Q psy3306 4 LHKWNLRGHLPNFLFKYMDERSFKIRLNNSTLSQDFSNVCGIPQGGVASSTLFAIAINTITSY--------IH-PSLSSS 74 (535)
Q Consensus 4 L~~~g~~~~~~~~I~~~l~~r~~~v~~~~~~s~~~~~~~~GvpQGs~LSP~Lf~l~~~~l~~~--------~~-~~~~~~ 74 (535)
|.++++++. ..++..+. .+ .+..+| ..+.+..|.|-|+|.--++=++...-+... +. ..+.++
T Consensus 436 l~~~~~~~~-~~l~~~l~-~~--~~~~~g----~v~~~~~G~PSG~p~Tsi~NSlvn~i~~~~a~~~~~~~~~~~~~~~~ 507 (644)
T 2ijd_1 436 LEKIGFGDR-VDYIDYLN-HS--HHLYKN----KTYCVKGGMPSGCSGTSIFNSMINNLIIRTLLLKTYKGIDLDHLKMI 507 (644)
T ss_dssp HHHTTTGGG-THHHHHHH-EE--EEECSS----EEEEEESSCCSBSTTHHHHHHHHHHHHHHHHHHHHSSSCCGGGCEEE
T ss_pred HHHhCCCCH-HHHHHhhh-Cc--EEEECC----EEEEEeeecCCCCCceecchHHHHHHHHHHHHHhhccCCCCceeEEE
Confidence 456677665 44555544 22 344566 345789999999997654443332222211 11 246788
Q ss_pred EeecceEEEEecCChHHHHHHHHHHHHHHHHHHhhcCccccC-CceeE
Q psy3306 75 LFVDDFAIFTRDKNKDLLISTMQESIDKLNHFSDQTGLYFSP-QKTQC 121 (535)
Q Consensus 75 ~yADD~~i~~~~~~~~~~~~~l~~~l~~l~~w~~~~gl~ln~-~Kt~~ 121 (535)
.|=||.++-....- .++.+.+.+.+.||.+++ +||..
T Consensus 508 ~yGDD~i~s~~~~~----------~~~~~~~~~~~~Gl~~t~~dKt~~ 545 (644)
T 2ijd_1 508 AYGDDVIASYPHEV----------DASLLAQSGKDYGLTMTPADKSAT 545 (644)
T ss_dssp EETTEEEEEESSCC----------CHHHHHHHHHHTTCCEEETTTCSS
T ss_pred EeCCcEEEeccccc----------CHHHHHHHHHHcCCEechhhccCC
Confidence 99999999875532 234556667789999987 68874
No 27
>2ckw_A RNA-directed RNA polymerase; hydrolase, nucleotide-binding, nucleotidyltransferase, covalent protein-RNA linkage, RNA elongation; 2.3A {Sapporo virus} PDB: 2uuw_A 2wk4_A 2uut_A
Probab=59.24 E-value=18 Score=37.34 Aligned_cols=98 Identities=12% Similarity=0.046 Sum_probs=53.5
Q ss_pred CChHHH-HHHHhcCCceEEEEECCeecccccccccCCCCCCchhHHHHHHHhhchhhh--------cC--------CCce
Q psy3306 10 RGHLPN-FLFKYMDERSFKIRLNNSTLSQDFSNVCGIPQGGVASSTLFAIAINTITSY--------IH--------PSLS 72 (535)
Q Consensus 10 ~~~~~~-~I~~~l~~r~~~v~~~~~~s~~~~~~~~GvpQGs~LSP~Lf~l~~~~l~~~--------~~--------~~~~ 72 (535)
+..+.. ++++++ .+. ....+|. .+.+..|.|-|++.--++=+++..-+... +. ..+.
T Consensus 268 ~~~~~~~~~~~L~-~~~-i~~~~g~----v~~~~~G~PSG~p~Tsi~NSi~N~i~~~~a~~~~~~~~~~~~~~~~~~~~~ 341 (515)
T 2ckw_A 268 PHPIVSCAIEALS-SPA-EGYVNDI----KFVTRGGLPSGMPFTSVVNSINHMIYVAAAILQAYESHNVPYTGNVFQVET 341 (515)
T ss_dssp CCTHHHHHHHHHH-SCC-EEEETTE----EEECSSSCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCHHHHSE
T ss_pred CChHHHHHHHHHh-CCc-eEEECCE----EEEEeCcccCCCCeeecchHHHHHHHHHHHHHHHHhhcCCCcccccccceE
Confidence 333433 444444 332 2356774 45789999999998655444432222210 11 1356
Q ss_pred eEEeecceEEEEecCChHHHHHHHHHHHHHHHHHHhhcCccccCC-ceeE
Q psy3306 73 SSLFVDDFAIFTRDKNKDLLISTMQESIDKLNHFSDQTGLYFSPQ-KTQC 121 (535)
Q Consensus 73 ~~~yADD~~i~~~~~~~~~~~~~l~~~l~~l~~w~~~~gl~ln~~-Kt~~ 121 (535)
++.|=||.++-.... ....++.+.+.+.+.||.+++. ||..
T Consensus 342 ~~~yGDD~i~s~~~~--------~~~~~~~~~~~~~~~Gl~~t~~dKt~~ 383 (515)
T 2ckw_A 342 IHTYGDDCMYSVCPA--------TASIFHTVLANLTSYGLKPTAADKSDA 383 (515)
T ss_dssp EEEETTEEEEEECHH--------HHHTHHHHHHHHHHHTCCC--------
T ss_pred EEEECCceEEEecch--------hHHHHHHHHHHHHHcCcEEeccccCCC
Confidence 889999999976432 2233456666778899999884 8774
No 28
>1xr7_A Genome polyprotein; RNA-dependent RNA polymerase, transferase; 2.30A {Human rhinovirus 16} SCOP: e.8.1.4 PDB: 1tp7_A* 1xr6_A
Probab=54.65 E-value=22 Score=36.00 Aligned_cols=98 Identities=20% Similarity=0.255 Sum_probs=61.7
Q ss_pred hhhCCCCChHHHHHHHhcCCceEEEEECCeecccccccccCCCCCCchhHHHHHHHhhchhh----h----cC-CCceeE
Q psy3306 4 LHKWNLRGHLPNFLFKYMDERSFKIRLNNSTLSQDFSNVCGIPQGGVASSTLFAIAINTITS----Y----IH-PSLSSS 74 (535)
Q Consensus 4 L~~~g~~~~~~~~I~~~l~~r~~~v~~~~~~s~~~~~~~~GvpQGs~LSP~Lf~l~~~~l~~----~----~~-~~~~~~ 74 (535)
|.+.|++++++.-| . .+ .+..+| ..+.+..|.|-|++.--++=+++..-+.. . +. ..+.++
T Consensus 254 l~~~~~~~~l~~~l---~-~~--~~~~~g----~v~~~~~G~PSG~p~Tsi~NSl~n~i~~~~a~~~~~~~~~~~~~~~~ 323 (460)
T 1xr7_A 254 LDNLSFNPTLINRL---C-NS--KHIFKS----TYYEVEGGVPSGCSGTSIFNSMINNIIIRTLVLDAYKHIDLDKLKII 323 (460)
T ss_dssp HHHTTSCSSTTHHH---H-EE--EEEETT----EEEEEESSCCTTSTTHHHHHHHHHHHHHHHHHHHHCSSCCGGGCEEE
T ss_pred HHhcCCCHHHHHHH---h-Cc--EEEECC----EEEEEeCCccCCCCccccchhHHHHHHHHHHHHHHhcCCCccceeEE
Confidence 45667776544333 2 22 345577 34588999999999765544443222211 1 11 146788
Q ss_pred EeecceEEEEecCChHHHHHHHHHHHHHHHHHHhhcCccccC-CceeE
Q psy3306 75 LFVDDFAIFTRDKNKDLLISTMQESIDKLNHFSDQTGLYFSP-QKTQC 121 (535)
Q Consensus 75 ~yADD~~i~~~~~~~~~~~~~l~~~l~~l~~w~~~~gl~ln~-~Kt~~ 121 (535)
.|=||.++-....- .++.+.+.+.+.||.+++ +||+.
T Consensus 324 ~yGDD~i~s~~~~~----------~~~~l~~~~~~~Gl~~t~~dKt~~ 361 (460)
T 1xr7_A 324 AYGDDVIFSYKYKL----------DMEAIAKEGQKYGLTITPADKSSE 361 (460)
T ss_dssp EETTEEEEEESSCC----------CHHHHHHTTGGGTCCEEESTTCSS
T ss_pred EecCceEEEeCCcC----------CHHHHHHHHHHcCcEechhhhcCC
Confidence 99999999875432 245667778899999985 78873
No 29
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=46.20 E-value=12 Score=37.86 Aligned_cols=67 Identities=7% Similarity=-0.092 Sum_probs=42.7
Q ss_pred CceEEEecCCCCCCCeeEEEEE-cCCCe-----eeeecCC---CCCCchHHHHHHHHHHHHHHHH-cCCCcEEEecCCCC
Q psy3306 367 DHVKIFTDGSKNDLGVGCALTI-PERNI-----SKRFALN---KNASIFHAELLALLQSLITIKE-LGVNKALIITDSLM 436 (535)
Q Consensus 367 ~~~~i~tDgS~~~~~~g~a~~~-~~~~~-----~~~~~l~---~~~s~~~aE~~ai~~al~~~~~-~~~~~~~I~tDs~s 436 (535)
....+|||+|.. +.|+ +.. ..++. ..+.++. ...+.++.|+.|+..|++.... .....+.|+||+..
T Consensus 345 ~~~~l~~DAS~~--~~ga-vL~q~~~~~~~~i~y~Sk~l~~~e~~ys~~ekEllAi~~a~~~~~~yl~g~~~~v~tDh~~ 421 (455)
T 1rw3_A 345 KPFELFVDEKQG--YAKG-VLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVIKAPHAV 421 (455)
T ss_dssp CTTSCEEEEEEC--SSSB-EECCBCTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHHHHHHHHHHGGGCSSCEEEECSSCT
T ss_pred CcEEEEEeccCC--ccee-EEEEecCCcEEEEEEEcccCCccccccchHHHHHHHHHHHHHHHHHHcCCCcEEEEecChH
Confidence 456889999843 2332 222 11111 1122332 2457889999999999998865 35678999999975
No 30
>3bso_A RNA dependent RNA polymerase; RNA-dependent RNA polymerase, viral replication, antiviral E inhibitor, helicase, hydrolase; HET: CTP; 1.74A {Norwalk virus} PDB: 3bsn_A* 3h5x_A* 3h5y_A* 1sh0_A 1sh2_A 1sh3_A 2b43_A
Probab=43.99 E-value=33 Score=35.18 Aligned_cols=79 Identities=22% Similarity=0.177 Sum_probs=50.8
Q ss_pred EEECCeecccccccccCCCCCCchhHHHHHHHhhchhh-----h---cC-----CCceeEEeecceEEEEecCChHHHHH
Q psy3306 28 IRLNNSTLSQDFSNVCGIPQGGVASSTLFAIAINTITS-----Y---IH-----PSLSSSLFVDDFAIFTRDKNKDLLIS 94 (535)
Q Consensus 28 v~~~~~~s~~~~~~~~GvpQGs~LSP~Lf~l~~~~l~~-----~---~~-----~~~~~~~yADD~~i~~~~~~~~~~~~ 94 (535)
...+|. -+.+..|.|-|++.--++=++ +|.+.- . +. ..+.++.|=||.++-....-.
T Consensus 285 ~~~~g~----v~~~~~G~PSG~p~Tsi~NSi-~N~i~~~~a~~~~~~~~~~~~~~~~~~~~yGDD~i~s~~~~~~----- 354 (510)
T 3bso_A 285 VDVGDF----TISINEGLPSGVPCTSQWNSI-AHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLD----- 354 (510)
T ss_dssp EECSSE----EEEECSSCCTTSTTHHHHHHH-HHHHHHHHHHHHHHTCCHHHHHHTEEEEEETTEEEEEESSCCC-----
T ss_pred eecCCE----EEEEeCcccCCCCeeeccchH-HHHHHHHHHHHHhcCCCHHHhhheEEEEEecCceeeccCcccc-----
Confidence 345553 357899999999976554444 333321 1 11 234568999999987665422
Q ss_pred HHHHHHHHHHHHHhhcCccccC-CceeE
Q psy3306 95 TMQESIDKLNHFSDQTGLYFSP-QKTQC 121 (535)
Q Consensus 95 ~l~~~l~~l~~w~~~~gl~ln~-~Kt~~ 121 (535)
.+.+.+.+.+.||.+++ +||..
T Consensus 355 -----~~~~~~~~~~~Gl~~t~~dKt~~ 377 (510)
T 3bso_A 355 -----PEKLTAKLKEYGLKPTRPDKTEG 377 (510)
T ss_dssp -----HHHHHHHHHHTTCCEECTTCCSS
T ss_pred -----HHHHHHHHHHcCcCccccccccC
Confidence 24555566778999999 59874
No 31
>1khv_A RNA-directed RNA polymerase; RNA-dependent RNA polymerase, transferase; 2.50A {Rabbit hemorrhagic disease virus} SCOP: e.8.1.4 PDB: 1khw_A
Probab=43.75 E-value=52 Score=33.77 Aligned_cols=98 Identities=15% Similarity=0.099 Sum_probs=57.9
Q ss_pred CChHHH-HHHHhcCCceEEEEECCeecccccccccCCCCCCchhHHHHHHHhhch--------hhhcC-------CCcee
Q psy3306 10 RGHLPN-FLFKYMDERSFKIRLNNSTLSQDFSNVCGIPQGGVASSTLFAIAINTI--------TSYIH-------PSLSS 73 (535)
Q Consensus 10 ~~~~~~-~I~~~l~~r~~~v~~~~~~s~~~~~~~~GvpQGs~LSP~Lf~l~~~~l--------~~~~~-------~~~~~ 73 (535)
+..+.. .++++++ +. ....+|. .+.+..|.|-|++.--++=+++..-+ ..... ..+.+
T Consensus 276 ~~~~~~~~~~~L~~-~~-~~~~~g~----v~~~~~G~PSG~p~Tsi~NSi~N~i~i~~a~~~~~~~~g~~~~~~~~~~~~ 349 (516)
T 1khv_A 276 QTELTKSVVLTLKS-HP-MTILDAM----IVQTKRGLPSGMPFTSVINSICHWLLWSAAVYKSCAEIGLHCSNLYEDAPF 349 (516)
T ss_dssp CSHHHHHHHHHHHS-CC-EEECSSE----EECCSSCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHSCE
T ss_pred CccHHHHHHHHHhc-Cc-eEEECCE----EEEEeCCcCCCCCeecchhHHHHHHHHHHHHHHHHHhcCCCHHHHhhceeE
Confidence 344433 4444443 22 3455664 34779999999998654444332111 11111 13578
Q ss_pred EEeecceEEEEecCChHHHHHHHHHHHHHHHHHHhhcCccccC-CceeE
Q psy3306 74 SLFVDDFAIFTRDKNKDLLISTMQESIDKLNHFSDQTGLYFSP-QKTQC 121 (535)
Q Consensus 74 ~~yADD~~i~~~~~~~~~~~~~l~~~l~~l~~w~~~~gl~ln~-~Kt~~ 121 (535)
+.|=||.++-.... ....++.+.+.+.+.||.+++ +||..
T Consensus 350 ~~yGDD~i~s~~~~--------~~~~~~~~~~~~~~~Gl~~t~~dKt~~ 390 (516)
T 1khv_A 350 YTYGDDGVYAMTPM--------MVSLLPAIIENLRDYGLSPTAADKTEF 390 (516)
T ss_dssp EEETTEEEEEECHH--------HHHTHHHHHHHHHHTTCCEEESSTTSC
T ss_pred EEecCceEEEecch--------hhhHHHHHHHHHHHcCcEeccccccCC
Confidence 89999999976522 123345666777889999986 68764
No 32
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=40.29 E-value=42 Score=25.84 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHhhcCc--cccCCceeEEEeccc
Q psy3306 93 ISTMQESIDKLNHFSDQTGL--YFSPQKTQCVLFSRK 127 (535)
Q Consensus 93 ~~~l~~~l~~l~~w~~~~gl--~ln~~Kt~~~~~~~~ 127 (535)
...|.+-.+.++.+.....| .+|+.||+++||+..
T Consensus 28 ~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~N 64 (100)
T 1go4_E 28 RSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLN 64 (100)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSC
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCC
Confidence 34566667777777777555 899999999999875
No 33
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=36.38 E-value=30 Score=29.72 Aligned_cols=38 Identities=16% Similarity=0.383 Sum_probs=27.7
Q ss_pred EeecceEEEEecCChHHHHHHHHHHHHHHHHHHhhcCc
Q psy3306 75 LFVDDFAIFTRDKNKDLLISTMQESIDKLNHFSDQTGL 112 (535)
Q Consensus 75 ~yADD~~i~~~~~~~~~~~~~l~~~l~~l~~w~~~~gl 112 (535)
.|++|++|-+.+.+.++...++++.++.+..|...+||
T Consensus 147 ~y~~~~vi~~n~~~~~~~~~~v~~i~~~l~~~~~~~~~ 184 (184)
T 1y63_A 147 AYEDDIVLVRENDTLEQMAATVEEIRERVEVLKVERGL 184 (184)
T ss_dssp HSCGGGEEEEECSSHHHHHHHHHHHHHHHHHHC-----
T ss_pred HhccCcEEECCCCCHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 47788888777778888888888889999988887764
Done!