RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3306
         (535 letters)



>d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of
           imidazoleglycerolphosphate synthase HisF {Baker's yeast
           (Saccharomyces cerevisiae), His7 [TaxId: 4932]}
          Length = 323

 Score = 34.0 bits (77), Expect = 0.035
 Identities = 22/192 (11%), Positives = 52/192 (27%), Gaps = 15/192 (7%)

Query: 347 SMPAQFFQNEFKNKIEENFKDHVKIFTDGSKNDLGVGCALTIPERNISKRFALNKNASIF 406
           S+         K     N  D        SK        +++  + +      +    +F
Sbjct: 133 SIGTDAVYAAEKYYELGNRGDGTSPIETISKAYGAQAVVISVDPKRVYVNSQADTKNKVF 192

Query: 407 HAELLALLQSLITIKELGVNKALIITDSLMYPWKSSCQKSRLDEVCLMRMRLGHSKITHS 466
             E            +  +       D  ++    +C+     E+ L  +       ++S
Sbjct: 193 ETEYPGPNGEKYCWYQCTIKGGRESRDLGVWELTRACEALGAGEILLNCIDKD---GSNS 249

Query: 467 HLFRREDRPMCQQCQVPM-------TIEHILIACRNMRFRPPSFSSTSISDILKNDEGTL 519
                    +    ++P+         EH   A     F      +   + +    E T+
Sbjct: 250 GYDLELIEHVKDAVKIPVIASSGAGVPEHFEEA-----FLKTRADACLGAGMFHRGEFTV 304

Query: 520 KEVLQFLKRNNF 531
            +V ++L  +  
Sbjct: 305 NDVKEYLLEHGL 316


>d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus
           [TaxId: 274]}
          Length = 147

 Score = 29.1 bits (64), Expect = 0.72
 Identities = 21/123 (17%), Positives = 37/123 (30%), Gaps = 7/123 (5%)

Query: 366 KDHVKIFTDGS-KNDLGVG--CALTIPERNISKRFALNKNASIFHAELLALLQSLITIKE 422
           +  V +FTDG+   + G G   AL     +           +    EL A ++ L  +KE
Sbjct: 1   RKRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGLKALKE 60

Query: 423 LGVNKALIITDSLMYPWKSSCQKSRLDEVCLMRMRLGHSKITHSHLFRREDRPMCQQCQV 482
                 + +     Y  K +  +  L+       R    K   +              +V
Sbjct: 61  ---PCEVDLYTDSHYLKK-AFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPHRV 116

Query: 483 PMT 485
              
Sbjct: 117 RFH 119


>d1a8ra_ d.96.1.1 (A:) GTP cyclohydrolase I {Escherichia coli
           [TaxId: 562]}
          Length = 221

 Score = 27.7 bits (61), Expect = 3.0
 Identities = 11/51 (21%), Positives = 25/51 (49%)

Query: 480 CQVPMTIEHILIACRNMRFRPPSFSSTSISDILKNDEGTLKEVLQFLKRNN 530
             V +   H  +  R +R    + ++TS+  + K+ + T  E L+ ++ +N
Sbjct: 171 VAVSIDAVHYCVKARGIRDATSATTTTSLGGLFKSSQNTRHEFLRAVRHHN 221


>d1ik7a_ a.77.1.2 (A:) Pelle death domain {Drosophila melanogaster
           [TaxId: 7227]}
          Length = 52

 Score = 25.1 bits (55), Expect = 4.2
 Identities = 4/22 (18%), Positives = 7/22 (31%)

Query: 273 VLSIENHPNAMRILNPLYKPKY 294
           +       NAMR++        
Sbjct: 27  LFKKLKLHNAMRLIKDYVSEDL 48


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0643    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,907,865
Number of extensions: 88345
Number of successful extensions: 211
Number of sequences better than 10.0: 1
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 11
Length of query: 535
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 445
Effective length of database: 1,171,896
Effective search space: 521493720
Effective search space used: 521493720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.1 bits)