Query psy3307
Match_columns 130
No_of_seqs 142 out of 1039
Neff 9.2
Searched_HMMs 29240
Date Fri Aug 16 21:38:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3307.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3307hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fe2_A Probable ATP-dependent 99.9 7.1E-27 2.4E-31 164.6 14.8 118 2-130 20-137 (242)
2 2db3_A ATP-dependent RNA helic 99.9 1.9E-26 6.3E-31 174.6 14.6 117 3-130 48-164 (434)
3 3fmo_B ATP-dependent RNA helic 99.9 1.2E-25 4E-30 163.4 13.1 105 9-129 90-197 (300)
4 2oxc_A Probable ATP-dependent 99.9 1.5E-25 5E-30 156.8 12.8 111 3-129 16-127 (230)
5 3dkp_A Probable ATP-dependent 99.9 1E-25 3.5E-30 158.6 11.7 113 2-129 16-132 (245)
6 1t6n_A Probable ATP-dependent 99.9 2.2E-25 7.4E-30 154.6 13.2 113 1-129 4-117 (220)
7 3bor_A Human initiation factor 99.9 1.2E-25 4E-30 158.0 12.0 111 3-129 22-132 (237)
8 3ber_A Probable ATP-dependent 99.9 2.7E-25 9.2E-30 157.5 13.6 107 7-129 39-145 (249)
9 3iuy_A Probable ATP-dependent 99.9 1.3E-25 4.6E-30 156.5 11.9 116 3-129 11-127 (228)
10 2pl3_A Probable ATP-dependent 99.9 5.3E-25 1.8E-29 154.1 14.6 113 5-129 19-131 (236)
11 1qde_A EIF4A, translation init 99.9 3.6E-25 1.2E-29 153.7 12.9 111 3-129 6-116 (224)
12 1q0u_A Bstdead; DEAD protein, 99.9 4.2E-25 1.4E-29 153.3 12.8 105 9-129 2-110 (219)
13 2i4i_A ATP-dependent RNA helic 99.9 6.9E-25 2.4E-29 163.7 13.6 128 2-129 6-135 (417)
14 1vec_A ATP-dependent RNA helic 99.9 1E-24 3.5E-29 149.6 12.7 103 11-129 3-106 (206)
15 1wrb_A DJVLGB; RNA helicase, D 99.9 2.6E-25 8.9E-30 157.3 9.6 114 9-129 21-134 (253)
16 3ly5_A ATP-dependent RNA helic 99.9 7.5E-24 2.6E-28 151.0 13.0 108 10-129 51-160 (262)
17 2gxq_A Heat resistant RNA depe 99.9 3.9E-23 1.3E-27 141.6 12.7 97 12-121 2-98 (207)
18 2j0s_A ATP-dependent RNA helic 99.9 3.5E-23 1.2E-27 154.5 12.5 106 8-129 34-139 (410)
19 1s2m_A Putative ATP-dependent 99.9 9.6E-23 3.3E-27 151.5 12.7 110 4-129 14-123 (400)
20 3pey_A ATP-dependent RNA helic 99.9 1.6E-22 5.6E-27 149.3 13.4 106 8-129 2-109 (395)
21 1fuu_A Yeast initiation factor 99.9 1.1E-22 3.9E-27 150.4 11.9 109 5-129 15-123 (394)
22 3fht_A ATP-dependent RNA helic 99.9 4.3E-22 1.5E-26 148.1 13.3 104 8-127 22-128 (412)
23 3eiq_A Eukaryotic initiation f 99.9 4.8E-22 1.7E-26 148.1 13.0 109 5-129 34-142 (414)
24 1xti_A Probable ATP-dependent 99.9 4.4E-22 1.5E-26 147.3 12.0 105 9-129 6-111 (391)
25 3fmp_B ATP-dependent RNA helic 99.9 4.4E-22 1.5E-26 151.8 11.8 103 9-127 90-195 (479)
26 1hv8_A Putative ATP-dependent 99.9 2.9E-21 1E-25 141.4 12.1 104 9-129 4-108 (367)
27 3sqw_A ATP-dependent RNA helic 99.9 6.9E-21 2.4E-25 148.5 12.6 101 8-120 14-120 (579)
28 3i5x_A ATP-dependent RNA helic 99.8 1.2E-20 4E-25 146.3 12.3 99 10-120 67-171 (563)
29 2z0m_A 337AA long hypothetical 99.8 1.6E-19 5.5E-24 130.9 13.2 90 18-129 1-90 (337)
30 2va8_A SSO2462, SKI2-type heli 99.8 1.1E-18 3.8E-23 138.8 12.3 101 9-128 6-107 (715)
31 2zj8_A DNA helicase, putative 99.8 5.8E-19 2E-23 140.7 10.2 99 12-129 2-101 (720)
32 1oyw_A RECQ helicase, ATP-depe 99.8 1E-18 3.4E-23 135.3 9.2 87 10-118 1-88 (523)
33 3oiy_A Reverse gyrase helicase 99.8 1.4E-18 4.9E-23 130.1 9.6 88 21-129 9-97 (414)
34 3fho_A ATP-dependent RNA helic 99.8 2.5E-19 8.4E-24 138.0 5.1 102 10-127 118-221 (508)
35 2v1x_A ATP-dependent DNA helic 99.8 3.4E-18 1.2E-22 134.0 10.8 84 13-118 23-107 (591)
36 2p6r_A Afuhel308 helicase; pro 99.7 8.8E-19 3E-23 139.3 5.1 97 12-128 2-100 (702)
37 2ykg_A Probable ATP-dependent 99.7 3.2E-17 1.1E-21 129.7 11.8 93 23-129 3-95 (696)
38 1tf5_A Preprotein translocase 99.7 2.9E-17 1E-21 131.8 10.4 81 28-130 79-159 (844)
39 3tbk_A RIG-I helicase domain; 99.7 7.6E-17 2.6E-21 123.7 11.7 83 33-129 4-86 (555)
40 4a2p_A RIG-I, retinoic acid in 99.7 8.3E-17 2.8E-21 123.7 11.1 85 31-129 5-89 (556)
41 1gku_B Reverse gyrase, TOP-RG; 99.7 1.3E-16 4.3E-21 131.9 11.6 97 12-129 31-137 (1054)
42 4a2q_A RIG-I, retinoic acid in 99.7 2.5E-16 8.4E-21 126.9 11.5 89 28-130 243-331 (797)
43 1gm5_A RECG; helicase, replica 99.7 5.2E-16 1.8E-20 124.8 11.9 90 20-129 356-451 (780)
44 4ddu_A Reverse gyrase; topoiso 99.7 4.5E-16 1.5E-20 129.0 10.6 82 28-130 74-155 (1104)
45 4f92_B U5 small nuclear ribonu 99.6 1.1E-15 3.7E-20 130.9 12.3 95 18-129 911-1007(1724)
46 4f92_B U5 small nuclear ribonu 99.6 1.1E-15 3.7E-20 130.8 12.2 92 30-129 76-168 (1724)
47 3b6e_A Interferon-induced heli 99.6 9.5E-16 3.3E-20 105.0 9.7 85 29-127 29-114 (216)
48 3l9o_A ATP-dependent RNA helic 99.6 1.6E-16 5.4E-21 131.7 6.4 92 10-120 161-252 (1108)
49 2fsf_A Preprotein translocase 99.6 6.7E-16 2.3E-20 123.9 9.5 80 29-130 71-150 (853)
50 4a2w_A RIG-I, retinoic acid in 99.6 8.7E-16 3E-20 125.6 9.8 89 28-130 243-331 (936)
51 1nkt_A Preprotein translocase 99.6 3.1E-15 1.1E-19 120.5 10.1 81 28-130 107-187 (922)
52 2ipc_A Preprotein translocase 99.6 7.4E-15 2.5E-19 118.5 10.5 81 28-130 75-155 (997)
53 2oca_A DAR protein, ATP-depend 99.6 1.1E-14 3.7E-19 111.7 9.1 78 33-128 113-190 (510)
54 1rif_A DAR protein, DNA helica 99.6 1.4E-14 4.9E-19 103.7 9.2 78 33-128 113-190 (282)
55 2whx_A Serine protease/ntpase/ 99.5 2.8E-16 9.5E-21 123.7 -0.7 82 16-116 155-236 (618)
56 4a15_A XPD helicase, ATP-depen 99.5 2.4E-14 8.2E-19 112.8 10.3 80 33-130 3-86 (620)
57 4gl2_A Interferon-induced heli 99.5 1.3E-14 4.5E-19 114.8 6.9 82 33-128 7-89 (699)
58 3crv_A XPD/RAD3 related DNA he 99.5 2.7E-14 9.1E-19 111.1 7.8 75 33-129 3-81 (551)
59 2jlq_A Serine protease subunit 99.5 3.7E-15 1.3E-19 113.4 2.7 68 30-116 1-69 (451)
60 2eyq_A TRCF, transcription-rep 99.5 1.8E-13 6E-18 114.0 12.8 95 15-129 585-686 (1151)
61 2xgj_A ATP-dependent RNA helic 99.5 1.2E-13 4.2E-18 113.7 10.8 75 26-120 80-154 (1010)
62 2wv9_A Flavivirin protease NS2 99.5 6.4E-16 2.2E-20 122.7 -3.5 76 25-118 202-293 (673)
63 4a4z_A Antiviral helicase SKI2 99.5 9.8E-14 3.4E-18 114.2 8.7 73 28-120 35-107 (997)
64 1wp9_A ATP-dependent RNA helic 99.5 4.4E-13 1.5E-17 100.5 10.5 76 33-127 9-84 (494)
65 2fwr_A DNA repair protein RAD2 99.4 7.3E-13 2.5E-17 100.6 10.5 64 33-118 93-156 (472)
66 3llm_A ATP-dependent RNA helic 99.4 8E-13 2.7E-17 92.4 8.8 72 33-118 61-132 (235)
67 2vl7_A XPD; helicase, unknown 99.4 8.7E-13 3E-17 102.4 7.6 67 29-118 4-74 (540)
68 2fz4_A DNA repair protein RAD2 99.4 5.9E-12 2E-16 88.4 10.5 64 33-118 93-156 (237)
69 2xau_A PRE-mRNA-splicing facto 99.3 4.3E-12 1.5E-16 102.2 9.4 93 7-116 68-161 (773)
70 1yks_A Genome polyprotein [con 99.3 6.9E-13 2.4E-17 100.6 4.0 57 44-118 4-60 (440)
71 2z83_A Helicase/nucleoside tri 99.3 1.1E-12 3.7E-17 100.0 4.1 57 42-116 15-71 (459)
72 2v6i_A RNA helicase; membrane, 99.2 7.7E-12 2.6E-16 94.6 5.1 52 47-116 1-52 (431)
73 3h1t_A Type I site-specific re 99.1 2.5E-11 8.7E-16 94.6 4.6 77 33-119 178-260 (590)
74 3o8b_A HCV NS3 protease/helica 99.1 1.7E-11 5.7E-16 97.1 1.0 63 34-118 218-280 (666)
75 2w00_A HSDR, R.ECOR124I; ATP-b 99.0 2E-10 6.7E-15 95.0 5.7 71 33-120 271-355 (1038)
76 3rc3_A ATP-dependent RNA helic 99.0 5.5E-10 1.9E-14 88.8 7.9 53 43-118 150-202 (677)
77 3jux_A Protein translocase sub 98.9 5.8E-09 2E-13 83.3 10.5 81 28-130 71-151 (822)
78 1z63_A Helicase of the SNF2/RA 98.8 1.1E-08 3.9E-13 78.0 7.7 71 33-121 37-111 (500)
79 1w36_D RECD, exodeoxyribonucle 98.8 1.5E-08 5.2E-13 79.7 7.3 72 35-123 151-224 (608)
80 3dmq_A RNA polymerase-associat 98.7 5.4E-08 1.9E-12 80.1 8.5 68 33-118 153-222 (968)
81 1z3i_X Similar to RAD54-like; 98.4 2.2E-06 7.6E-11 67.8 10.4 76 33-121 55-139 (644)
82 3mwy_W Chromo domain-containin 98.4 8.1E-07 2.8E-11 71.8 7.1 72 33-121 236-311 (800)
83 4b3f_X DNA-binding protein smu 98.2 7.7E-06 2.6E-10 64.7 9.0 67 33-118 189-256 (646)
84 2gk6_A Regulator of nonsense t 98.1 1.5E-05 5.1E-10 62.9 8.6 69 32-118 179-247 (624)
85 2xzl_A ATP-dependent helicase 98.1 2.1E-05 7.2E-10 63.8 9.5 69 32-118 359-427 (802)
86 3lfu_A DNA helicase II; SF1 he 97.9 7.6E-05 2.6E-09 58.5 10.0 71 32-119 8-78 (647)
87 2wjy_A Regulator of nonsense t 97.9 4.4E-05 1.5E-09 61.9 8.7 69 32-118 355-423 (800)
88 3upu_A ATP-dependent DNA helic 97.8 0.00012 4.1E-09 55.6 8.7 71 27-115 19-94 (459)
89 3e1s_A Exodeoxyribonuclease V, 97.8 0.00014 4.7E-09 57.0 8.8 63 33-114 189-251 (574)
90 1c4o_A DNA nucleotide excision 97.7 9.8E-05 3.3E-09 58.7 7.0 68 30-120 6-78 (664)
91 1uaa_A REP helicase, protein ( 97.6 0.00025 8.4E-09 56.2 8.5 71 33-120 2-72 (673)
92 1pjr_A PCRA; DNA repair, DNA r 97.5 0.00071 2.4E-08 54.2 9.5 71 32-119 10-80 (724)
93 3u4q_A ATP-dependent helicase/ 97.5 0.00035 1.2E-08 59.0 7.9 70 33-117 10-79 (1232)
94 3cpe_A Terminase, DNA packagin 97.2 0.003 1E-07 49.4 10.0 74 33-123 163-236 (592)
95 2o0j_A Terminase, DNA packagin 97.1 0.0041 1.4E-07 46.5 9.6 74 33-123 163-236 (385)
96 2d7d_A Uvrabc system protein B 96.9 0.0025 8.5E-08 50.6 7.1 66 33-120 12-82 (661)
97 4b4t_M 26S protease regulatory 96.3 0.0018 6.2E-08 49.1 2.5 56 6-64 173-231 (434)
98 3cf0_A Transitional endoplasmi 96.3 0.0013 4.4E-08 47.1 1.5 62 1-65 2-66 (301)
99 3ec2_A DNA replication protein 96.2 0.016 5.6E-07 37.9 6.7 18 47-64 37-54 (180)
100 4b4t_J 26S protease regulatory 96.1 0.0029 9.9E-08 47.5 2.6 58 5-65 139-199 (405)
101 3h4m_A Proteasome-activating n 95.5 0.0055 1.9E-07 43.0 1.9 57 6-65 9-68 (285)
102 3co5_A Putative two-component 95.4 0.017 5.8E-07 36.6 3.8 20 45-64 24-43 (143)
103 4b4t_H 26S protease regulatory 95.3 0.0064 2.2E-07 46.5 1.9 56 7-65 202-260 (467)
104 4b4t_L 26S protease subunit RP 95.2 0.0054 1.8E-07 46.5 1.1 58 5-65 172-232 (437)
105 4b4t_I 26S protease regulatory 95.2 0.0095 3.3E-07 45.1 2.4 57 6-65 174-233 (437)
106 3n70_A Transport activator; si 95.1 0.023 7.9E-07 36.0 3.8 20 46-65 22-41 (145)
107 1xwi_A SKD1 protein; VPS4B, AA 95.1 0.039 1.3E-06 39.8 5.4 54 6-65 4-62 (322)
108 3vkw_A Replicase large subunit 95.0 0.024 8.3E-07 43.1 4.2 45 49-117 162-206 (446)
109 4b4t_K 26S protease regulatory 94.9 0.0078 2.7E-07 45.5 1.3 57 6-65 164-223 (428)
110 2eyu_A Twitching motility prot 94.8 0.039 1.3E-06 38.8 4.6 20 45-64 22-41 (261)
111 3eie_A Vacuolar protein sortin 94.5 0.009 3.1E-07 43.0 0.8 57 3-65 7-68 (322)
112 2x8a_A Nuclear valosin-contain 94.3 0.008 2.7E-07 42.6 0.1 55 7-64 3-60 (274)
113 2qz4_A Paraplegin; AAA+, SPG7, 94.3 0.061 2.1E-06 37.0 4.6 53 10-65 2-56 (262)
114 3b9p_A CG5977-PA, isoform A; A 94.2 0.014 4.8E-07 41.2 1.2 58 5-65 12-71 (297)
115 2kjq_A DNAA-related protein; s 94.1 0.051 1.8E-06 34.8 3.7 18 47-64 35-52 (149)
116 1e9r_A Conjugal transfer prote 94.1 0.064 2.2E-06 40.1 4.7 45 46-109 51-95 (437)
117 1lv7_A FTSH; alpha/beta domain 94.0 0.072 2.5E-06 36.7 4.6 54 8-64 6-61 (257)
118 2oap_1 GSPE-2, type II secreti 94.0 0.098 3.3E-06 40.4 5.6 40 23-64 236-276 (511)
119 1u0j_A DNA replication protein 93.9 0.1 3.4E-06 37.1 5.2 45 19-66 72-122 (267)
120 2w58_A DNAI, primosome compone 93.7 0.25 8.5E-06 32.6 6.7 16 49-64 55-70 (202)
121 1ixz_A ATP-dependent metallopr 93.7 0.022 7.6E-07 39.3 1.4 56 6-64 8-65 (254)
122 3hws_A ATP-dependent CLP prote 93.5 0.15 5.2E-06 37.1 5.6 19 47-65 50-68 (363)
123 3jvv_A Twitching mobility prot 93.4 0.14 4.9E-06 37.6 5.4 18 47-64 122-139 (356)
124 3b85_A Phosphate starvation-in 93.4 0.088 3E-06 35.7 4.0 31 35-65 9-39 (208)
125 3cf2_A TER ATPase, transitiona 93.3 0.046 1.6E-06 44.5 2.8 60 3-65 466-528 (806)
126 3nbx_X ATPase RAVA; AAA+ ATPas 93.2 0.17 5.9E-06 38.9 5.8 30 35-64 28-57 (500)
127 1tue_A Replication protein E1; 93.2 0.14 4.9E-06 35.0 4.7 51 20-73 28-82 (212)
128 2r44_A Uncharacterized protein 93.2 0.066 2.3E-06 38.3 3.3 25 40-64 38-62 (331)
129 3te6_A Regulatory protein SIR3 93.1 0.079 2.7E-06 38.5 3.6 28 47-75 44-71 (318)
130 1iy2_A ATP-dependent metallopr 93.1 0.036 1.2E-06 38.9 1.7 55 7-64 33-89 (278)
131 1jbk_A CLPB protein; beta barr 93.0 0.051 1.7E-06 35.0 2.3 17 48-64 43-59 (195)
132 3uk6_A RUVB-like 2; hexameric 93.0 0.096 3.3E-06 37.9 3.9 18 48-65 70-87 (368)
133 3hjh_A Transcription-repair-co 92.9 0.29 1E-05 37.5 6.6 52 47-120 13-64 (483)
134 3bos_A Putative DNA replicatio 92.8 0.056 1.9E-06 36.4 2.3 19 47-65 51-69 (242)
135 2dr3_A UPF0273 protein PH0284; 92.8 0.11 3.8E-06 35.2 3.8 19 47-65 22-40 (247)
136 3d8b_A Fidgetin-like protein 1 92.7 0.16 5.6E-06 37.0 4.9 19 47-65 116-134 (357)
137 2qgz_A Helicase loader, putati 92.7 0.33 1.1E-05 34.8 6.3 18 48-65 152-169 (308)
138 1ofh_A ATP-dependent HSL prote 92.5 0.42 1.4E-05 33.4 6.6 18 48-65 50-67 (310)
139 1kgd_A CASK, peripheral plasma 92.5 0.063 2.2E-06 35.2 2.2 19 46-64 3-21 (180)
140 1lvg_A Guanylate kinase, GMP k 92.4 0.13 4.3E-06 34.3 3.6 26 47-74 3-28 (198)
141 2gza_A Type IV secretion syste 92.3 0.084 2.9E-06 38.8 2.9 21 44-64 171-191 (361)
142 2zan_A Vacuolar protein sortin 92.3 0.046 1.6E-06 41.2 1.5 57 6-65 126-184 (444)
143 2p65_A Hypothetical protein PF 92.3 0.055 1.9E-06 34.8 1.7 17 48-64 43-59 (187)
144 2bjv_A PSP operon transcriptio 92.3 0.13 4.6E-06 35.5 3.8 19 46-64 27-45 (265)
145 3syl_A Protein CBBX; photosynt 92.2 0.07 2.4E-06 37.7 2.3 17 49-65 68-84 (309)
146 2r62_A Cell division protease 92.1 0.085 2.9E-06 36.5 2.6 55 8-65 5-61 (268)
147 2pt7_A CAG-ALFA; ATPase, prote 91.8 0.099 3.4E-06 38.0 2.7 19 45-63 168-186 (330)
148 3vfd_A Spastin; ATPase, microt 91.7 0.053 1.8E-06 40.0 1.2 18 48-65 148-165 (389)
149 1l8q_A Chromosomal replication 91.6 0.43 1.5E-05 33.9 5.9 17 48-64 37-53 (324)
150 4gp7_A Metallophosphoesterase; 91.6 0.076 2.6E-06 34.6 1.8 20 47-66 8-27 (171)
151 2orw_A Thymidine kinase; TMTK, 91.6 0.33 1.1E-05 32.1 4.9 26 48-74 3-28 (184)
152 2zts_A Putative uncharacterize 91.5 0.2 7E-06 33.9 3.9 19 47-65 29-47 (251)
153 3tau_A Guanylate kinase, GMP k 91.5 0.1 3.5E-06 35.0 2.3 18 47-64 7-24 (208)
154 3vaa_A Shikimate kinase, SK; s 91.4 0.11 3.6E-06 34.6 2.3 20 46-65 23-42 (199)
155 3iij_A Coilin-interacting nucl 91.4 0.088 3E-06 34.2 1.9 20 46-65 9-28 (180)
156 2ewv_A Twitching motility prot 91.3 0.14 4.8E-06 37.8 3.1 20 45-64 133-152 (372)
157 1zp6_A Hypothetical protein AT 91.2 0.086 2.9E-06 34.5 1.7 20 45-64 6-25 (191)
158 1w36_B RECB, exodeoxyribonucle 91.2 0.57 1.9E-05 39.6 6.9 64 46-117 15-78 (1180)
159 3tr0_A Guanylate kinase, GMP k 91.2 0.12 4E-06 34.2 2.3 18 47-64 6-23 (205)
160 2w0m_A SSO2452; RECA, SSPF, un 91.1 0.31 1.1E-05 32.5 4.5 20 46-65 21-40 (235)
161 2j41_A Guanylate kinase; GMP, 91.1 0.11 3.7E-06 34.4 2.1 20 45-64 3-22 (207)
162 2b8t_A Thymidine kinase; deoxy 90.7 0.32 1.1E-05 33.4 4.3 27 47-74 11-37 (223)
163 2chg_A Replication factor C sm 90.6 0.16 5.3E-06 33.4 2.6 16 49-64 39-54 (226)
164 1qhx_A CPT, protein (chloramph 90.6 0.13 4.5E-06 33.2 2.2 18 48-65 3-20 (178)
165 1p9r_A General secretion pathw 90.6 0.22 7.4E-06 37.5 3.6 27 38-64 155-183 (418)
166 1kag_A SKI, shikimate kinase I 90.6 0.16 5.4E-06 32.6 2.5 17 48-64 4-20 (173)
167 1z6g_A Guanylate kinase; struc 90.6 0.16 5.4E-06 34.4 2.6 20 45-64 20-39 (218)
168 3a00_A Guanylate kinase, GMP k 90.6 0.16 5.4E-06 33.4 2.5 17 48-64 1-17 (186)
169 1znw_A Guanylate kinase, GMP k 90.5 0.14 4.9E-06 34.2 2.4 21 44-64 16-36 (207)
170 3t15_A Ribulose bisphosphate c 90.4 0.12 4.2E-06 36.7 2.0 16 49-64 37-52 (293)
171 3trf_A Shikimate kinase, SK; a 90.4 0.14 4.8E-06 33.3 2.2 18 48-65 5-22 (185)
172 3lw7_A Adenylate kinase relate 90.4 0.13 4.4E-06 32.7 2.0 15 50-64 3-17 (179)
173 1d2n_A N-ethylmaleimide-sensit 90.4 0.12 4.3E-06 35.9 2.0 17 49-65 65-81 (272)
174 1xx6_A Thymidine kinase; NESG, 90.4 0.37 1.3E-05 32.2 4.3 28 47-75 7-34 (191)
175 2qor_A Guanylate kinase; phosp 90.4 0.17 5.7E-06 33.7 2.6 20 45-64 9-28 (204)
176 1ojl_A Transcriptional regulat 90.3 0.23 7.9E-06 35.5 3.4 18 47-64 24-41 (304)
177 1njg_A DNA polymerase III subu 90.2 0.3 1E-05 32.3 3.8 15 50-64 47-61 (250)
178 4eun_A Thermoresistant glucoki 90.1 0.16 5.6E-06 33.6 2.3 18 47-64 28-45 (200)
179 4akg_A Glutathione S-transfera 90.1 0.42 1.4E-05 43.8 5.4 47 18-65 890-940 (2695)
180 2c9o_A RUVB-like 1; hexameric 90.0 0.15 5.1E-06 38.5 2.3 19 47-65 62-80 (456)
181 1s96_A Guanylate kinase, GMP k 90.0 0.17 5.7E-06 34.6 2.3 21 44-64 12-32 (219)
182 3vkg_A Dynein heavy chain, cyt 90.0 0.39 1.3E-05 44.6 5.1 47 18-65 873-923 (3245)
183 1ex7_A Guanylate kinase; subst 89.9 0.18 6.2E-06 33.6 2.4 16 49-64 2-17 (186)
184 2v1u_A Cell division control p 89.9 0.16 5.3E-06 36.7 2.2 18 47-64 43-60 (387)
185 4ag6_A VIRB4 ATPase, type IV s 89.8 0.48 1.6E-05 34.8 4.8 19 47-65 34-52 (392)
186 2qp9_X Vacuolar protein sortin 89.7 0.19 6.3E-06 36.7 2.5 52 8-65 45-101 (355)
187 1y63_A LMAJ004144AAA protein; 89.6 0.18 6E-06 33.1 2.2 18 47-64 9-26 (184)
188 3c8u_A Fructokinase; YP_612366 89.6 0.25 8.5E-06 33.0 2.9 18 47-64 21-38 (208)
189 1ly1_A Polynucleotide kinase; 89.5 0.18 6.1E-06 32.4 2.1 16 50-65 4-19 (181)
190 2ehv_A Hypothetical protein PH 89.5 0.22 7.6E-06 33.7 2.7 21 45-65 27-47 (251)
191 1knq_A Gluconate kinase; ALFA/ 89.5 0.15 5.2E-06 32.8 1.8 19 47-65 7-25 (175)
192 3pfi_A Holliday junction ATP-d 89.4 0.19 6.5E-06 35.9 2.4 17 49-65 56-72 (338)
193 3ney_A 55 kDa erythrocyte memb 89.3 0.21 7.1E-06 33.7 2.4 19 46-64 17-35 (197)
194 1um8_A ATP-dependent CLP prote 89.3 0.21 7.2E-06 36.4 2.6 18 48-65 72-89 (376)
195 2ze6_A Isopentenyl transferase 89.3 0.18 6.2E-06 35.0 2.1 16 50-65 3-18 (253)
196 1ypw_A Transitional endoplasmi 89.2 0.065 2.2E-06 43.5 -0.2 60 4-64 467-527 (806)
197 1kht_A Adenylate kinase; phosp 89.2 0.2 6.7E-06 32.5 2.1 17 48-64 3-19 (192)
198 2v9p_A Replication protein E1; 89.2 0.3 1E-05 35.2 3.2 27 46-74 124-150 (305)
199 1sxj_D Activator 1 41 kDa subu 89.0 0.32 1.1E-05 34.7 3.3 17 49-65 59-75 (353)
200 4fcw_A Chaperone protein CLPB; 88.8 0.19 6.5E-06 35.4 2.0 17 49-65 48-64 (311)
201 3hu3_A Transitional endoplasmi 88.8 0.18 6.2E-06 38.6 2.0 19 47-65 237-255 (489)
202 3kb2_A SPBC2 prophage-derived 88.7 0.21 7.1E-06 31.8 2.0 15 50-64 3-17 (173)
203 1sxj_E Activator 1 40 kDa subu 88.7 0.84 2.9E-05 32.6 5.4 43 11-65 11-53 (354)
204 1rj9_A FTSY, signal recognitio 88.7 0.69 2.4E-05 33.1 4.9 27 47-75 101-127 (304)
205 2qmh_A HPR kinase/phosphorylas 88.6 0.2 6.9E-06 34.1 1.9 18 47-64 33-50 (205)
206 3u4q_B ATP-dependent helicase/ 88.5 0.61 2.1E-05 39.3 5.1 38 52-105 5-42 (1166)
207 1hqc_A RUVB; extended AAA-ATPa 88.5 0.18 6.3E-06 35.7 1.7 18 48-65 38-55 (324)
208 3f9v_A Minichromosome maintena 88.5 0.37 1.3E-05 37.8 3.6 15 50-64 329-343 (595)
209 3cm0_A Adenylate kinase; ATP-b 88.3 0.16 5.6E-06 32.9 1.3 18 47-64 3-20 (186)
210 2i3b_A HCR-ntpase, human cance 88.3 0.52 1.8E-05 31.3 3.8 18 48-65 1-18 (189)
211 3foz_A TRNA delta(2)-isopenten 88.2 0.25 8.6E-06 35.9 2.3 16 50-65 12-27 (316)
212 3a8t_A Adenylate isopentenyltr 88.2 0.23 7.7E-06 36.4 2.0 18 48-65 40-57 (339)
213 1g8p_A Magnesium-chelatase 38 88.1 0.16 5.4E-06 36.4 1.1 18 47-64 44-61 (350)
214 3exa_A TRNA delta(2)-isopenten 88.0 0.26 8.9E-06 35.9 2.3 17 49-65 4-20 (322)
215 2bdt_A BH3686; alpha-beta prot 88.0 0.18 6.1E-06 33.0 1.3 17 49-65 3-19 (189)
216 3bgw_A DNAB-like replicative h 87.8 0.87 3E-05 34.4 5.1 27 47-74 196-222 (444)
217 3tif_A Uncharacterized ABC tra 87.7 0.3 1E-05 33.6 2.3 18 46-63 29-46 (235)
218 3bh0_A DNAB-like replicative h 87.6 0.94 3.2E-05 32.4 5.0 19 47-65 67-85 (315)
219 1ye8_A Protein THEP1, hypothet 87.5 0.3 1E-05 32.1 2.2 15 50-64 2-16 (178)
220 1fnn_A CDC6P, cell division co 87.5 0.43 1.5E-05 34.4 3.2 16 50-65 46-61 (389)
221 2cvh_A DNA repair and recombin 87.4 0.37 1.3E-05 31.9 2.6 19 47-65 19-37 (220)
222 2qby_A CDC6 homolog 1, cell di 87.3 0.33 1.1E-05 34.8 2.5 18 48-65 45-62 (386)
223 2dhr_A FTSH; AAA+ protein, hex 87.3 1.5 5.2E-05 33.7 6.3 52 9-65 26-81 (499)
224 3uie_A Adenylyl-sulfate kinase 87.3 0.27 9.1E-06 32.6 1.9 19 46-64 23-41 (200)
225 2rhm_A Putative kinase; P-loop 87.2 0.26 9E-06 32.0 1.8 17 48-64 5-21 (193)
226 2ius_A DNA translocase FTSK; n 87.2 0.65 2.2E-05 35.9 4.2 28 47-74 166-193 (512)
227 2px0_A Flagellar biosynthesis 87.1 0.95 3.2E-05 32.2 4.8 19 47-65 104-122 (296)
228 3nwn_A Kinesin-like protein KI 87.1 0.48 1.6E-05 34.9 3.3 23 43-65 98-122 (359)
229 3nwj_A ATSK2; P loop, shikimat 87.0 0.45 1.5E-05 33.2 3.0 19 47-65 47-65 (250)
230 2chq_A Replication factor C sm 87.0 1.2 4.2E-05 31.0 5.3 42 11-65 14-55 (319)
231 3t61_A Gluconokinase; PSI-biol 87.0 0.32 1.1E-05 32.1 2.1 16 49-64 19-34 (202)
232 1in4_A RUVB, holliday junction 86.9 0.34 1.2E-05 34.9 2.4 16 49-64 52-67 (334)
233 4a74_A DNA repair and recombin 86.9 0.32 1.1E-05 32.5 2.1 19 47-65 24-42 (231)
234 1gvn_B Zeta; postsegregational 86.9 0.25 8.5E-06 35.0 1.6 17 48-64 33-49 (287)
235 3lnc_A Guanylate kinase, GMP k 86.8 0.25 8.6E-06 33.5 1.6 19 46-64 25-43 (231)
236 2r2a_A Uncharacterized protein 86.8 0.54 1.8E-05 31.6 3.2 16 50-65 7-22 (199)
237 1bg2_A Kinesin; motor protein, 86.8 0.53 1.8E-05 34.2 3.3 23 43-65 71-95 (325)
238 3asz_A Uridine kinase; cytidin 86.7 0.29 9.9E-06 32.5 1.8 18 47-64 5-22 (211)
239 1n0w_A DNA repair protein RAD5 86.7 0.42 1.4E-05 32.2 2.6 19 47-65 23-41 (243)
240 1u94_A RECA protein, recombina 86.7 5.9 0.0002 28.9 8.9 19 47-65 62-80 (356)
241 1ry6_A Internal kinesin; kines 86.6 0.57 2E-05 34.5 3.5 19 47-65 82-102 (360)
242 1m7g_A Adenylylsulfate kinase; 86.4 0.41 1.4E-05 31.9 2.5 31 34-65 12-42 (211)
243 2qby_B CDC6 homolog 3, cell di 86.4 0.36 1.2E-05 34.9 2.3 18 48-65 45-62 (384)
244 3dc4_A Kinesin-like protein NO 86.3 0.53 1.8E-05 34.5 3.1 23 43-65 88-112 (344)
245 2v54_A DTMP kinase, thymidylat 86.3 0.39 1.3E-05 31.5 2.2 18 47-64 3-20 (204)
246 1iqp_A RFCS; clamp loader, ext 86.3 0.58 2E-05 32.9 3.3 16 50-65 48-63 (327)
247 1tev_A UMP-CMP kinase; ploop, 86.3 0.32 1.1E-05 31.5 1.8 18 48-65 3-20 (196)
248 1zd8_A GTP:AMP phosphotransfer 86.2 0.39 1.3E-05 32.4 2.3 18 47-64 6-23 (227)
249 2c95_A Adenylate kinase 1; tra 86.2 0.38 1.3E-05 31.3 2.1 19 46-64 7-25 (196)
250 2bwj_A Adenylate kinase 5; pho 86.2 0.47 1.6E-05 30.9 2.6 19 46-64 10-28 (199)
251 1aky_A Adenylate kinase; ATP:A 86.1 0.36 1.2E-05 32.3 2.1 18 47-64 3-20 (220)
252 3b9q_A Chloroplast SRP recepto 86.1 0.57 1.9E-05 33.5 3.1 26 47-74 99-124 (302)
253 1sgw_A Putative ABC transporte 86.1 0.46 1.6E-05 32.3 2.6 19 46-64 33-51 (214)
254 2cbz_A Multidrug resistance-as 86.1 0.41 1.4E-05 32.9 2.3 19 46-64 29-47 (237)
255 3k1j_A LON protease, ATP-depen 85.7 0.69 2.3E-05 36.2 3.7 23 43-65 55-77 (604)
256 3crm_A TRNA delta(2)-isopenten 85.7 0.38 1.3E-05 34.9 2.1 16 50-65 7-22 (323)
257 4a14_A Kinesin, kinesin-like p 85.7 0.65 2.2E-05 34.0 3.3 23 43-65 77-101 (344)
258 1goj_A Kinesin, kinesin heavy 85.7 0.61 2.1E-05 34.3 3.2 22 44-65 75-98 (355)
259 3b6u_A Kinesin-like protein KI 85.6 0.64 2.2E-05 34.5 3.3 22 44-65 96-119 (372)
260 3dm5_A SRP54, signal recogniti 85.6 2.3 7.8E-05 32.2 6.4 17 49-65 101-117 (443)
261 2y65_A Kinesin, kinesin heavy 85.6 0.66 2.3E-05 34.3 3.3 22 44-65 79-102 (365)
262 1nlf_A Regulatory protein REPA 85.6 0.49 1.7E-05 33.0 2.6 22 44-65 26-47 (279)
263 1sxj_C Activator 1 40 kDa subu 85.5 0.57 1.9E-05 33.6 3.0 20 46-65 42-63 (340)
264 2pez_A Bifunctional 3'-phospho 85.5 0.38 1.3E-05 31.1 1.9 18 47-64 4-21 (179)
265 2vvg_A Kinesin-2; motor protei 85.5 0.67 2.3E-05 34.0 3.3 22 44-65 84-107 (350)
266 2pze_A Cystic fibrosis transme 85.5 0.46 1.6E-05 32.5 2.3 19 46-64 32-50 (229)
267 4etp_A Kinesin-like protein KA 85.5 0.66 2.3E-05 34.7 3.3 25 41-65 132-158 (403)
268 2pcj_A ABC transporter, lipopr 85.4 0.45 1.5E-05 32.4 2.2 19 46-64 28-46 (224)
269 2bbw_A Adenylate kinase 4, AK4 85.4 0.47 1.6E-05 32.4 2.4 18 47-64 26-43 (246)
270 3gfo_A Cobalt import ATP-bindi 85.4 0.45 1.5E-05 33.6 2.3 19 46-64 32-50 (275)
271 2h58_A Kinesin-like protein KI 85.3 0.7 2.4E-05 33.6 3.3 25 41-65 72-98 (330)
272 1xp8_A RECA protein, recombina 85.3 1.3 4.5E-05 32.6 4.8 26 48-74 74-99 (366)
273 2zfi_A Kinesin-like protein KI 85.3 0.69 2.4E-05 34.2 3.3 23 43-65 83-107 (366)
274 1zak_A Adenylate kinase; ATP:A 85.3 0.44 1.5E-05 31.9 2.2 17 48-64 5-21 (222)
275 1t5c_A CENP-E protein, centrom 85.3 0.68 2.3E-05 34.0 3.3 23 43-65 71-95 (349)
276 3m6a_A ATP-dependent protease 85.3 0.43 1.5E-05 37.0 2.3 19 47-65 107-125 (543)
277 3hr8_A Protein RECA; alpha and 85.3 1.2 3.9E-05 32.8 4.5 33 41-74 48-86 (356)
278 1cr0_A DNA primase/helicase; R 85.3 0.43 1.5E-05 33.6 2.1 21 45-65 32-52 (296)
279 3t0q_A AGR253WP; kinesin, alph 85.3 0.75 2.6E-05 33.7 3.5 25 41-65 77-103 (349)
280 3d3q_A TRNA delta(2)-isopenten 85.3 0.42 1.4E-05 35.0 2.1 16 50-65 9-24 (340)
281 1g6h_A High-affinity branched- 85.2 0.47 1.6E-05 33.0 2.3 19 46-64 31-49 (257)
282 1a5t_A Delta prime, HOLB; zinc 85.2 0.65 2.2E-05 33.4 3.1 31 35-65 4-41 (334)
283 3cob_A Kinesin heavy chain-lik 85.2 0.6 2.1E-05 34.6 3.0 25 41-65 71-97 (369)
284 1nks_A Adenylate kinase; therm 85.2 0.38 1.3E-05 31.1 1.7 15 50-64 3-17 (194)
285 1via_A Shikimate kinase; struc 85.1 0.52 1.8E-05 30.3 2.4 15 50-64 6-20 (175)
286 3pvs_A Replication-associated 85.1 0.42 1.4E-05 36.1 2.2 17 49-65 51-67 (447)
287 2ce7_A Cell division protein F 85.1 0.41 1.4E-05 36.6 2.1 55 8-65 10-66 (476)
288 1x88_A Kinesin-like protein KI 85.1 0.7 2.4E-05 34.0 3.3 23 43-65 82-106 (359)
289 3gbj_A KIF13B protein; kinesin 85.1 0.71 2.4E-05 34.0 3.3 24 42-65 85-110 (354)
290 4g1u_C Hemin import ATP-bindin 85.1 0.48 1.6E-05 33.3 2.3 19 46-64 35-53 (266)
291 1ji0_A ABC transporter; ATP bi 85.0 0.49 1.7E-05 32.6 2.3 19 46-64 30-48 (240)
292 1f9v_A Kinesin-like protein KA 85.0 0.69 2.4E-05 33.9 3.2 25 41-65 76-102 (347)
293 2nr8_A Kinesin-like protein KI 85.0 0.71 2.4E-05 34.0 3.3 23 43-65 97-121 (358)
294 3cmu_A Protein RECA, recombina 85.0 4.7 0.00016 36.3 8.7 25 42-66 1415-1445(2050)
295 3kta_A Chromosome segregation 84.9 0.47 1.6E-05 30.7 2.1 22 50-73 28-49 (182)
296 3e70_C DPA, signal recognition 84.9 1.1 3.8E-05 32.5 4.2 27 47-75 128-154 (328)
297 2f1r_A Molybdopterin-guanine d 84.9 0.56 1.9E-05 30.7 2.4 24 50-75 4-27 (171)
298 2yvu_A Probable adenylyl-sulfa 84.9 0.42 1.4E-05 31.1 1.9 19 47-65 12-30 (186)
299 2z43_A DNA repair and recombin 84.9 0.9 3.1E-05 32.6 3.8 18 48-65 107-124 (324)
300 1v8k_A Kinesin-like protein KI 84.9 0.82 2.8E-05 34.4 3.6 23 43-65 148-172 (410)
301 3u06_A Protein claret segregat 84.9 0.64 2.2E-05 34.9 3.0 25 41-65 130-156 (412)
302 2ff7_A Alpha-hemolysin translo 84.8 0.51 1.7E-05 32.7 2.3 19 46-64 33-51 (247)
303 3qf7_A RAD50; ABC-ATPase, ATPa 84.8 0.45 1.5E-05 34.9 2.1 16 50-65 25-40 (365)
304 3fb4_A Adenylate kinase; psych 84.8 0.48 1.6E-05 31.5 2.1 15 50-64 2-16 (216)
305 3lre_A Kinesin-like protein KI 84.8 0.7 2.4E-05 34.0 3.2 22 44-65 100-123 (355)
306 3pxg_A Negative regulator of g 84.8 0.45 1.5E-05 36.1 2.2 19 47-65 200-218 (468)
307 2iyv_A Shikimate kinase, SK; t 84.8 0.59 2E-05 30.2 2.5 16 49-64 3-18 (184)
308 2z4s_A Chromosomal replication 84.7 0.52 1.8E-05 35.4 2.5 17 48-64 130-146 (440)
309 1sxj_A Activator 1 95 kDa subu 84.7 0.47 1.6E-05 36.4 2.3 17 49-65 78-94 (516)
310 2zpa_A Uncharacterized protein 84.7 0.9 3.1E-05 36.3 3.9 60 33-114 175-236 (671)
311 1jr3_A DNA polymerase III subu 84.7 1.8 6E-05 31.0 5.3 16 50-65 40-55 (373)
312 2ghi_A Transport protein; mult 84.7 0.52 1.8E-05 32.9 2.3 19 46-64 44-62 (260)
313 1b0u_A Histidine permease; ABC 84.6 0.52 1.8E-05 32.9 2.3 19 46-64 30-48 (262)
314 2plr_A DTMP kinase, probable t 84.6 0.41 1.4E-05 31.5 1.7 18 47-64 3-20 (213)
315 1f2t_A RAD50 ABC-ATPase; DNA d 84.6 0.46 1.6E-05 30.2 1.9 23 50-74 25-47 (149)
316 2og2_A Putative signal recogni 84.5 1.1 3.9E-05 32.9 4.2 26 48-75 157-182 (359)
317 2wwf_A Thymidilate kinase, put 84.5 0.5 1.7E-05 31.2 2.1 18 47-64 9-26 (212)
318 2wbe_C Bipolar kinesin KRP-130 84.4 0.73 2.5E-05 34.1 3.1 22 44-65 95-118 (373)
319 2qt1_A Nicotinamide riboside k 84.4 0.29 9.8E-06 32.5 0.9 21 44-64 17-37 (207)
320 2cdn_A Adenylate kinase; phosp 84.4 0.57 2E-05 30.8 2.4 17 48-64 20-36 (201)
321 1htw_A HI0065; nucleotide-bind 84.4 0.46 1.6E-05 30.7 1.9 27 46-74 31-57 (158)
322 1g41_A Heat shock protein HSLU 84.4 0.58 2E-05 35.5 2.6 18 48-65 50-67 (444)
323 2qi9_C Vitamin B12 import ATP- 84.3 0.55 1.9E-05 32.6 2.3 19 46-64 24-42 (249)
324 1nn5_A Similar to deoxythymidy 84.2 0.53 1.8E-05 31.1 2.2 18 47-64 8-25 (215)
325 3dl0_A Adenylate kinase; phosp 84.2 0.53 1.8E-05 31.3 2.1 16 50-65 2-17 (216)
326 2d2e_A SUFC protein; ABC-ATPas 84.2 0.57 1.9E-05 32.5 2.3 19 46-64 27-45 (250)
327 2yz2_A Putative ABC transporte 84.2 0.56 1.9E-05 32.8 2.3 19 46-64 31-49 (266)
328 4akg_A Glutathione S-transfera 84.2 0.51 1.8E-05 43.2 2.5 20 45-64 1264-1283(2695)
329 2heh_A KIF2C protein; kinesin, 84.1 0.83 2.8E-05 34.0 3.3 23 43-65 128-152 (387)
330 2nq2_C Hypothetical ABC transp 84.1 0.57 2E-05 32.6 2.3 19 46-64 29-47 (253)
331 2zu0_C Probable ATP-dependent 84.0 0.58 2E-05 32.8 2.3 19 46-64 44-62 (267)
332 1vpl_A ABC transporter, ATP-bi 83.9 0.59 2E-05 32.6 2.3 19 46-64 39-57 (256)
333 1e6c_A Shikimate kinase; phosp 83.9 0.6 2E-05 29.7 2.2 16 49-64 3-18 (173)
334 2iut_A DNA translocase FTSK; n 83.9 2.1 7.1E-05 33.6 5.6 27 48-74 214-240 (574)
335 3be4_A Adenylate kinase; malar 83.9 0.53 1.8E-05 31.6 2.0 17 48-64 5-21 (217)
336 3eph_A TRNA isopentenyltransfe 83.9 0.55 1.9E-05 35.3 2.2 15 50-64 4-18 (409)
337 1mv5_A LMRA, multidrug resista 83.8 0.47 1.6E-05 32.7 1.8 19 46-64 26-44 (243)
338 3aez_A Pantothenate kinase; tr 83.8 0.83 2.8E-05 32.8 3.2 27 47-75 89-115 (312)
339 1qf9_A UMP/CMP kinase, protein 83.8 0.53 1.8E-05 30.4 1.9 16 49-64 7-22 (194)
340 2if2_A Dephospho-COA kinase; a 83.7 0.56 1.9E-05 30.9 2.1 16 50-65 3-18 (204)
341 2olj_A Amino acid ABC transpor 83.6 0.61 2.1E-05 32.7 2.3 18 47-64 49-66 (263)
342 1xjc_A MOBB protein homolog; s 83.5 2.1 7.1E-05 28.0 4.8 15 50-64 6-20 (169)
343 3bfn_A Kinesin-like protein KI 83.5 0.7 2.4E-05 34.5 2.7 21 45-65 94-116 (388)
344 2r6a_A DNAB helicase, replicat 83.5 1.8 6.2E-05 32.5 5.1 27 47-74 202-228 (454)
345 2ixe_A Antigen peptide transpo 83.5 0.62 2.1E-05 32.7 2.3 19 46-64 43-61 (271)
346 3u61_B DNA polymerase accessor 83.5 1.6 5.3E-05 30.9 4.5 16 50-65 50-65 (324)
347 2zr9_A Protein RECA, recombina 83.5 1.9 6.7E-05 31.4 5.1 18 48-65 61-78 (349)
348 2ihy_A ABC transporter, ATP-bi 83.4 0.63 2.1E-05 32.9 2.3 19 46-64 45-63 (279)
349 1cke_A CK, MSSA, protein (cyti 83.4 0.59 2E-05 31.2 2.1 16 49-64 6-21 (227)
350 1ak2_A Adenylate kinase isoenz 83.4 0.57 1.9E-05 31.8 2.1 18 47-64 15-32 (233)
351 2yhs_A FTSY, cell division pro 83.3 1.3 4.6E-05 34.1 4.2 26 48-75 293-318 (503)
352 2q6t_A DNAB replication FORK h 83.2 1.8 6.2E-05 32.4 4.9 27 47-74 199-225 (444)
353 3a4m_A L-seryl-tRNA(SEC) kinas 83.2 0.6 2E-05 32.4 2.1 18 48-65 4-21 (260)
354 2j9r_A Thymidine kinase; TK1, 83.1 2 6.7E-05 29.4 4.6 40 48-106 28-67 (214)
355 2vli_A Antibiotic resistance p 83.1 0.46 1.6E-05 30.6 1.5 19 47-65 4-22 (183)
356 2owm_A Nckin3-434, related to 83.0 0.96 3.3E-05 34.3 3.3 22 44-65 131-154 (443)
357 1jjv_A Dephospho-COA kinase; P 82.9 0.63 2.2E-05 30.7 2.1 15 50-64 4-18 (206)
358 2p5t_B PEZT; postsegregational 82.7 0.41 1.4E-05 33.0 1.2 17 48-64 32-48 (253)
359 1ukz_A Uridylate kinase; trans 82.7 0.62 2.1E-05 30.6 2.0 17 49-65 16-32 (203)
360 2rep_A Kinesin-like protein KI 82.7 0.87 3E-05 33.8 2.9 24 42-65 108-133 (376)
361 3pxi_A Negative regulator of g 82.7 0.59 2E-05 37.5 2.2 19 47-65 200-218 (758)
362 2jaq_A Deoxyguanosine kinase; 82.6 0.58 2E-05 30.5 1.8 15 50-64 2-16 (205)
363 1vma_A Cell division protein F 82.3 1.7 5.8E-05 31.2 4.3 17 49-65 105-121 (306)
364 4e22_A Cytidylate kinase; P-lo 82.3 0.74 2.5E-05 31.8 2.3 19 47-65 26-44 (252)
365 1ypw_A Transitional endoplasmi 82.3 0.57 1.9E-05 38.1 1.9 18 47-64 237-254 (806)
366 1zuh_A Shikimate kinase; alpha 82.3 0.68 2.3E-05 29.5 2.0 16 49-64 8-23 (168)
367 3qks_A DNA double-strand break 82.0 1.3 4.4E-05 29.6 3.4 23 50-74 25-47 (203)
368 3tlx_A Adenylate kinase 2; str 81.9 0.77 2.6E-05 31.5 2.3 18 47-64 28-45 (243)
369 3auy_A DNA double-strand break 81.8 1.3 4.5E-05 32.3 3.6 21 50-72 27-47 (371)
370 3nh6_A ATP-binding cassette SU 81.8 0.83 2.8E-05 32.8 2.5 26 47-74 79-104 (306)
371 3sr0_A Adenylate kinase; phosp 81.7 0.66 2.2E-05 31.3 1.8 15 50-64 2-16 (206)
372 2r8r_A Sensor protein; KDPD, P 81.5 2.6 9E-05 29.0 4.8 17 50-66 8-24 (228)
373 3kl4_A SRP54, signal recogniti 81.5 4.1 0.00014 30.7 6.3 17 49-65 98-114 (433)
374 2pbr_A DTMP kinase, thymidylat 81.5 0.73 2.5E-05 29.8 2.0 15 50-64 2-16 (195)
375 2bbs_A Cystic fibrosis transme 81.4 0.8 2.7E-05 32.6 2.3 18 47-64 63-80 (290)
376 3tqc_A Pantothenate kinase; bi 81.4 2.3 7.8E-05 30.8 4.7 24 50-75 94-117 (321)
377 2pt5_A Shikimate kinase, SK; a 81.4 0.75 2.6E-05 29.1 2.0 15 50-64 2-16 (168)
378 1rz3_A Hypothetical protein rb 81.1 0.68 2.3E-05 30.6 1.7 18 47-64 21-38 (201)
379 2pjz_A Hypothetical protein ST 81.1 0.82 2.8E-05 32.0 2.2 17 48-64 30-46 (263)
380 3cf2_A TER ATPase, transitiona 81.0 0.73 2.5E-05 37.6 2.1 17 49-65 239-255 (806)
381 1e4v_A Adenylate kinase; trans 80.7 0.78 2.7E-05 30.6 1.9 15 50-64 2-16 (214)
382 2z0h_A DTMP kinase, thymidylat 80.6 0.82 2.8E-05 29.7 2.0 14 51-64 3-16 (197)
383 4h1g_A Maltose binding protein 80.5 1.2 4.2E-05 35.6 3.2 25 41-65 454-480 (715)
384 2jeo_A Uridine-cytidine kinase 80.5 0.75 2.6E-05 31.5 1.8 19 47-65 24-42 (245)
385 1lw7_A Transcriptional regulat 80.5 1.1 3.8E-05 32.6 2.8 25 48-74 170-194 (365)
386 4a1f_A DNAB helicase, replicat 80.5 3.3 0.00011 30.2 5.3 27 47-74 45-71 (338)
387 3vkg_A Dynein heavy chain, cyt 80.0 0.85 2.9E-05 42.5 2.4 19 45-63 1301-1319(3245)
388 1odf_A YGR205W, hypothetical 3 80.0 1.6 5.5E-05 30.9 3.5 16 49-64 32-47 (290)
389 1ltq_A Polynucleotide kinase; 79.9 0.9 3.1E-05 31.8 2.1 16 50-65 4-19 (301)
390 1r6b_X CLPA protein; AAA+, N-t 79.9 0.89 3.1E-05 36.3 2.3 19 47-65 206-224 (758)
391 2xb4_A Adenylate kinase; ATP-b 79.9 0.92 3.2E-05 30.6 2.1 15 50-64 2-16 (223)
392 3umf_A Adenylate kinase; rossm 79.8 0.81 2.8E-05 31.2 1.8 18 47-64 28-45 (217)
393 1tf7_A KAIC; homohexamer, hexa 79.8 1.8 6.1E-05 33.2 3.9 29 46-74 37-65 (525)
394 2onk_A Molybdate/tungstate ABC 79.7 0.95 3.3E-05 31.2 2.1 16 49-64 25-40 (240)
395 1zu4_A FTSY; GTPase, signal re 79.7 2.3 8E-05 30.6 4.3 17 49-65 106-122 (320)
396 3pxi_A Negative regulator of g 79.6 1.5 5.2E-05 35.1 3.5 16 50-65 523-538 (758)
397 1svm_A Large T antigen; AAA+ f 79.2 1.1 3.6E-05 33.3 2.4 18 47-64 168-185 (377)
398 1gtv_A TMK, thymidylate kinase 79.1 0.49 1.7E-05 31.3 0.5 14 51-64 3-16 (214)
399 2vp4_A Deoxynucleoside kinase; 79.1 0.89 3.1E-05 30.8 1.8 17 47-63 19-35 (230)
400 3qkt_A DNA double-strand break 79.0 0.9 3.1E-05 32.8 1.9 15 50-64 25-39 (339)
401 2qen_A Walker-type ATPase; unk 78.8 1.4 4.9E-05 31.0 2.9 18 47-64 30-47 (350)
402 1sxj_B Activator 1 37 kDa subu 78.6 1.3 4.4E-05 31.0 2.6 16 50-65 44-59 (323)
403 1uf9_A TT1252 protein; P-loop, 78.6 1 3.4E-05 29.4 1.9 16 50-65 10-25 (203)
404 3sop_A Neuronal-specific septi 78.5 0.99 3.4E-05 31.7 2.0 15 50-64 4-18 (270)
405 4eaq_A DTMP kinase, thymidylat 78.2 0.86 2.9E-05 31.1 1.5 18 47-64 25-42 (229)
406 3fvq_A Fe(3+) IONS import ATP- 78.2 1.2 4E-05 32.9 2.3 19 46-64 28-46 (359)
407 1vht_A Dephospho-COA kinase; s 78.1 1.1 3.9E-05 29.7 2.1 16 49-64 5-20 (218)
408 1r6b_X CLPA protein; AAA+, N-t 77.8 1 3.5E-05 36.0 2.0 16 50-65 490-505 (758)
409 1z47_A CYSA, putative ABC-tran 77.8 1.2 4.2E-05 32.6 2.3 19 46-64 39-57 (355)
410 1sq5_A Pantothenate kinase; P- 77.6 1 3.4E-05 32.1 1.8 26 47-74 79-104 (308)
411 3e2i_A Thymidine kinase; Zn-bi 77.6 3.2 0.00011 28.4 4.2 29 47-76 27-55 (219)
412 2yyz_A Sugar ABC transporter, 77.4 1.3 4.4E-05 32.6 2.3 19 46-64 27-45 (359)
413 2vhj_A Ntpase P4, P4; non- hyd 77.3 1.1 3.7E-05 32.7 1.9 19 47-65 122-140 (331)
414 3d31_A Sulfate/molybdate ABC t 77.2 1.2 4E-05 32.6 2.1 19 46-64 24-42 (348)
415 2it1_A 362AA long hypothetical 77.1 1.3 4.5E-05 32.6 2.3 19 46-64 27-45 (362)
416 1w4r_A Thymidine kinase; type 77.1 4.1 0.00014 27.3 4.6 28 47-75 19-46 (195)
417 1ko7_A HPR kinase/phosphatase; 77.0 7.7 0.00026 28.0 6.3 47 18-64 92-160 (314)
418 3gd7_A Fusion complex of cysti 76.9 1.3 4.5E-05 32.9 2.3 19 46-64 45-63 (390)
419 1qvr_A CLPB protein; coiled co 76.9 1.2 4.2E-05 36.2 2.3 16 50-65 590-605 (854)
420 3tqf_A HPR(Ser) kinase; transf 76.8 1.3 4.3E-05 29.6 1.9 19 47-65 15-33 (181)
421 1g29_1 MALK, maltose transport 76.5 1.4 4.8E-05 32.5 2.3 19 46-64 27-45 (372)
422 1q3t_A Cytidylate kinase; nucl 76.1 1.6 5.4E-05 29.6 2.4 19 47-65 15-33 (236)
423 3rlf_A Maltose/maltodextrin im 76.1 1.5 5E-05 32.6 2.3 26 46-73 27-52 (381)
424 2npi_A Protein CLP1; CLP1-PCF1 76.0 1.6 5.3E-05 33.2 2.5 19 46-64 136-154 (460)
425 1v43_A Sugar-binding transport 76.0 1.5 5.1E-05 32.4 2.3 19 46-64 35-53 (372)
426 1np6_A Molybdopterin-guanine d 75.5 1.5 5.2E-05 28.7 2.1 16 49-64 7-22 (174)
427 1q57_A DNA primase/helicase; d 75.4 3.3 0.00011 31.4 4.3 26 47-73 241-266 (503)
428 2fna_A Conserved hypothetical 75.1 2.5 8.4E-05 29.8 3.3 16 49-64 31-46 (357)
429 1pui_A ENGB, probable GTP-bind 74.8 1.4 4.6E-05 28.9 1.7 19 46-64 24-42 (210)
430 1w5s_A Origin recognition comp 74.6 1.7 5.9E-05 31.5 2.4 17 48-64 50-68 (412)
431 2i1q_A DNA repair and recombin 74.6 2.1 7.2E-05 30.4 2.8 18 48-65 98-115 (322)
432 1uj2_A Uridine-cytidine kinase 74.6 1.5 5.2E-05 30.0 2.0 16 50-65 24-39 (252)
433 1oxx_K GLCV, glucose, ABC tran 74.6 1.1 3.8E-05 32.8 1.4 19 46-64 29-47 (353)
434 3tui_C Methionine import ATP-b 74.5 1.7 5.8E-05 32.1 2.3 26 46-73 52-77 (366)
435 3zvl_A Bifunctional polynucleo 74.5 1.5 5.3E-05 32.6 2.1 17 49-65 259-275 (416)
436 1qvr_A CLPB protein; coiled co 74.4 1.4 4.9E-05 35.8 2.1 17 48-64 191-207 (854)
437 1v5w_A DMC1, meiotic recombina 74.2 2.3 7.7E-05 30.8 2.9 17 49-65 123-139 (343)
438 4a82_A Cystic fibrosis transme 74.1 1.7 5.7E-05 33.8 2.3 19 46-64 365-383 (578)
439 2grj_A Dephospho-COA kinase; T 74.0 1.7 5.7E-05 28.9 2.0 17 49-65 13-29 (192)
440 3ake_A Cytidylate kinase; CMP 73.8 1.8 6.1E-05 28.3 2.1 15 50-64 4-18 (208)
441 1pzn_A RAD51, DNA repair and r 73.7 2.2 7.6E-05 31.0 2.8 18 48-65 131-148 (349)
442 4tmk_A Protein (thymidylate ki 73.7 1.7 5.6E-05 29.5 2.0 18 47-64 2-19 (213)
443 3b5x_A Lipid A export ATP-bind 73.6 1.5 5.1E-05 34.1 1.9 27 46-74 367-393 (582)
444 1w1w_A Structural maintenance 73.3 2.9 9.9E-05 31.1 3.4 18 47-64 25-42 (430)
445 2f6r_A COA synthase, bifunctio 73.3 1.7 5.9E-05 30.5 2.0 16 50-65 77-92 (281)
446 3tmk_A Thymidylate kinase; pho 73.1 1.8 6E-05 29.5 2.0 18 47-64 4-21 (216)
447 2o5v_A DNA replication and rep 72.8 3.5 0.00012 30.2 3.7 15 50-64 28-42 (359)
448 3ice_A Transcription terminati 72.7 14 0.00048 27.9 6.8 32 34-65 157-191 (422)
449 1ls1_A Signal recognition part 72.4 4.9 0.00017 28.4 4.3 19 47-65 97-115 (295)
450 4edh_A DTMP kinase, thymidylat 72.1 1.6 5.3E-05 29.5 1.5 19 46-64 4-22 (213)
451 3r20_A Cytidylate kinase; stru 71.9 2.1 7.1E-05 29.5 2.1 18 48-65 9-26 (233)
452 2yv5_A YJEQ protein; hydrolase 71.3 3.2 0.00011 29.4 3.1 23 42-64 159-181 (302)
453 3b60_A Lipid A export ATP-bind 71.1 2.5 8.4E-05 32.9 2.6 27 46-74 367-393 (582)
454 1nij_A Hypothetical protein YJ 71.0 1.8 6E-05 31.0 1.7 14 51-64 7-20 (318)
455 2eyq_A TRCF, transcription-rep 71.0 2.7 9.2E-05 35.6 3.0 53 45-119 14-66 (1151)
456 2f9l_A RAB11B, member RAS onco 71.0 2.3 7.8E-05 27.7 2.1 14 50-63 7-20 (199)
457 3lda_A DNA repair protein RAD5 70.9 3.4 0.00012 30.8 3.3 26 7-32 80-105 (400)
458 3bs4_A Uncharacterized protein 70.8 4.4 0.00015 28.4 3.6 28 47-75 20-47 (260)
459 3qf4_A ABC transporter, ATP-bi 70.5 2.3 7.8E-05 33.2 2.3 19 46-64 367-385 (587)
460 2ocp_A DGK, deoxyguanosine kin 70.5 1.7 5.9E-05 29.4 1.5 17 48-64 2-18 (241)
461 2rcn_A Probable GTPase ENGC; Y 70.5 3.1 0.00011 30.6 2.9 22 42-63 209-230 (358)
462 1g5t_A COB(I)alamin adenosyltr 70.5 8.3 0.00028 25.8 4.8 26 49-74 29-54 (196)
463 3v9p_A DTMP kinase, thymidylat 70.3 1.7 6E-05 29.7 1.5 19 46-64 23-41 (227)
464 1yqt_A RNAse L inhibitor; ATP- 70.2 1.9 6.5E-05 33.3 1.8 20 45-64 44-63 (538)
465 1oix_A RAS-related protein RAB 70.1 2.4 8.2E-05 27.5 2.1 15 50-64 31-45 (191)
466 3lv8_A DTMP kinase, thymidylat 70.0 2.2 7.6E-05 29.3 2.0 19 46-64 25-43 (236)
467 3cr8_A Sulfate adenylyltranfer 70.0 4.6 0.00016 31.4 3.9 49 16-64 328-385 (552)
468 2h92_A Cytidylate kinase; ross 69.9 2.8 9.5E-05 27.7 2.4 18 48-65 3-20 (219)
469 2dyk_A GTP-binding protein; GT 69.7 2.1 7.1E-05 26.4 1.7 14 50-63 3-16 (161)
470 1p5z_B DCK, deoxycytidine kina 69.6 1.9 6.4E-05 29.7 1.5 18 47-64 23-40 (263)
471 2obl_A ESCN; ATPase, hydrolase 69.6 4 0.00014 29.7 3.3 26 46-73 69-94 (347)
472 3cmw_A Protein RECA, recombina 69.4 9.5 0.00032 33.9 6.0 26 48-73 34-59 (1706)
473 3ozx_A RNAse L inhibitor; ATP 68.4 1.3 4.6E-05 34.3 0.6 22 43-64 20-41 (538)
474 2ffh_A Protein (FFH); SRP54, s 68.4 6.7 0.00023 29.5 4.4 17 49-65 99-115 (425)
475 1qhl_A Protein (cell division 68.2 1.5 5.3E-05 30.0 0.8 21 52-74 31-51 (227)
476 3qf4_B Uncharacterized ABC tra 68.1 2.5 8.7E-05 33.0 2.1 19 46-64 379-397 (598)
477 3io5_A Recombination and repai 68.1 10 0.00036 27.6 5.2 23 50-73 30-52 (333)
478 1e69_A Chromosome segregation 68.1 1.9 6.7E-05 30.7 1.4 21 50-72 26-46 (322)
479 3j16_B RLI1P; ribosome recycli 68.0 2.7 9.3E-05 33.1 2.3 20 45-64 100-119 (608)
480 2dpy_A FLII, flagellum-specifi 67.9 4.4 0.00015 30.5 3.3 28 45-74 154-181 (438)
481 1g8x_A Myosin II heavy chain f 67.8 8.5 0.00029 32.3 5.2 54 12-65 128-189 (1010)
482 1z2a_A RAS-related protein RAB 67.7 2.4 8.3E-05 26.2 1.7 14 50-63 7-20 (168)
483 1knx_A Probable HPR(Ser) kinas 67.3 2.6 9E-05 30.4 1.9 19 47-65 146-164 (312)
484 3bk7_A ABC transporter ATP-bin 67.2 2.9 9.9E-05 32.9 2.3 20 45-64 114-133 (607)
485 2ged_A SR-beta, signal recogni 67.1 3.1 0.00011 26.6 2.1 15 49-63 49-63 (193)
486 1nrj_B SR-beta, signal recogni 66.9 3.1 0.00011 27.3 2.1 16 49-64 13-28 (218)
487 1j8m_F SRP54, signal recogniti 66.9 5.8 0.0002 28.1 3.7 17 49-65 99-115 (297)
488 2yl4_A ATP-binding cassette SU 66.9 2.6 8.9E-05 32.8 2.0 26 46-73 368-393 (595)
489 1ek0_A Protein (GTP-binding pr 66.6 2.5 8.4E-05 26.2 1.5 14 50-63 5-18 (170)
490 3cmu_A Protein RECA, recombina 66.5 7.5 0.00026 35.1 4.8 27 47-73 1080-1106(2050)
491 1z0j_A RAB-22, RAS-related pro 66.4 2.5 8.5E-05 26.2 1.5 14 50-63 8-21 (170)
492 3euj_A Chromosome partition pr 66.3 5 0.00017 30.8 3.4 25 49-75 30-54 (483)
493 3ux8_A Excinuclease ABC, A sub 66.2 3.1 0.0001 32.9 2.3 19 47-65 347-365 (670)
494 2ce2_X GTPase HRAS; signaling 65.7 3.4 0.00012 25.3 2.1 15 50-64 5-19 (166)
495 1u0l_A Probable GTPase ENGC; p 65.7 5.2 0.00018 28.3 3.2 20 44-63 165-184 (301)
496 3ux8_A Excinuclease ABC, A sub 65.6 2.8 9.7E-05 33.1 2.0 19 46-64 42-60 (670)
497 1kao_A RAP2A; GTP-binding prot 65.6 2.7 9.1E-05 25.9 1.5 14 50-63 5-18 (167)
498 1g16_A RAS-related protein SEC 65.5 2.8 9.4E-05 26.0 1.6 14 50-63 5-18 (170)
499 4anj_A Unconventional myosin-V 65.2 8.6 0.00029 32.4 4.8 54 12-65 99-161 (1052)
500 2qm8_A GTPase/ATPase; G protei 64.9 2.9 9.8E-05 30.2 1.8 18 47-64 54-71 (337)
No 1
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.95 E-value=7.1e-27 Score=164.57 Aligned_cols=118 Identities=31% Similarity=0.459 Sum_probs=104.6
Q ss_pred cccccccccCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCC
Q psy3307 2 QECLVSLKKQGFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPT 81 (130)
Q Consensus 2 ~~~~~~~~~~~f~~l~l~~~i~~~l~~~~~~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~ 81 (130)
++...|.+..+|+++++++.+++++.+.||..|+++|.++|+.+++|+|+++++|||||||++|++|++..+......
T Consensus 20 ~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~-- 97 (242)
T 3fe2_A 20 RGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFL-- 97 (242)
T ss_dssp ESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCC--
T ss_pred eCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhcccc--
Confidence 456788999999999999999999999999999999999999999999999999999999999999999998754321
Q ss_pred CCCCCCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhcCCCceEEeC
Q psy3307 82 PPAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVL 130 (130)
Q Consensus 82 ~~~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~~~~~~ 130 (130)
....++++||++||++|+.|+.+.++++....++++.+++
T Consensus 98 ---------~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~ 137 (242)
T 3fe2_A 98 ---------ERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIY 137 (242)
T ss_dssp ---------CTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred ---------ccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEE
Confidence 1122378999999999999999999999999888877653
No 2
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.94 E-value=1.9e-26 Score=174.64 Aligned_cols=117 Identities=48% Similarity=0.718 Sum_probs=103.9
Q ss_pred ccccccccCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCC
Q psy3307 3 ECLVSLKKQGFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTP 82 (130)
Q Consensus 3 ~~~~~~~~~~f~~l~l~~~i~~~l~~~~~~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~ 82 (130)
+...|.+..+|++++|++.+++++++.||..|||+|.++|+.+++|+|++++||||||||++|++|+++++......
T Consensus 48 ~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~--- 124 (434)
T 2db3_A 48 GSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHE--- 124 (434)
T ss_dssp SSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCC---
T ss_pred CCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccc---
Confidence 45567889999999999999999999999999999999999999999999999999999999999999998875421
Q ss_pred CCCCCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhcCCCceEEeC
Q psy3307 83 PAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVL 130 (130)
Q Consensus 83 ~~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~~~~~~ 130 (130)
....++++||++|||+|+.|+++++++++...++++.+++
T Consensus 125 --------~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~ 164 (434)
T 2db3_A 125 --------LELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVY 164 (434)
T ss_dssp --------CCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEEC
T ss_pred --------cccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEE
Confidence 1122478999999999999999999999998888876653
No 3
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.93 E-value=1.2e-25 Score=163.38 Aligned_cols=105 Identities=25% Similarity=0.489 Sum_probs=93.0
Q ss_pred ccCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHhHHhcC--CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCC
Q psy3307 9 KKQGFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISG--RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGR 86 (130)
Q Consensus 9 ~~~~f~~l~l~~~i~~~l~~~~~~~~t~~Q~~~i~~~~~g--~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 86 (130)
...+|++++|++.+++++.++||..||++|.++|+.+++| +|++++||||||||++|++|+++++.....
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~-------- 161 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANK-------- 161 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSC--------
T ss_pred CcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCC--------
Confidence 4578999999999999999999999999999999999988 999999999999999999999998754322
Q ss_pred CCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhcC-CCceEEe
Q psy3307 87 GYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRS-QLRPCVV 129 (130)
Q Consensus 87 ~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~-~~~~~~~ 129 (130)
++++||++|||+||.|+++.+++++... ++++..+
T Consensus 162 --------~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~ 197 (300)
T 3fmo_B 162 --------YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYA 197 (300)
T ss_dssp --------SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEE
T ss_pred --------CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEE
Confidence 2789999999999999999999998864 5555543
No 4
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.93 E-value=1.5e-25 Score=156.77 Aligned_cols=111 Identities=27% Similarity=0.396 Sum_probs=92.7
Q ss_pred ccccccccCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCC
Q psy3307 3 ECLVSLKKQGFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTP 82 (130)
Q Consensus 3 ~~~~~~~~~~f~~l~l~~~i~~~l~~~~~~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~ 82 (130)
++..+.+..+|+++++++.+.+++++.||..|+++|.++++.+++|+|+++++|||||||++|++|++..+.....
T Consensus 16 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~---- 91 (230)
T 2oxc_A 16 GDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENL---- 91 (230)
T ss_dssp --------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSC----
T ss_pred CCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCC----
Confidence 4567778899999999999999999999999999999999999999999999999999999999999988754321
Q ss_pred CCCCCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhcC-CCceEEe
Q psy3307 83 PAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRS-QLRPCVV 129 (130)
Q Consensus 83 ~~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~-~~~~~~~ 129 (130)
++++||++||++|+.|+.+.+++++... ++++.++
T Consensus 92 ------------~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~ 127 (230)
T 2oxc_A 92 ------------STQILILAPTREIAVQIHSVITAIGIKMEGLECHVF 127 (230)
T ss_dssp ------------SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEE
T ss_pred ------------CceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEE
Confidence 2689999999999999999999998765 6666554
No 5
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.93 E-value=1e-25 Score=158.62 Aligned_cols=113 Identities=36% Similarity=0.512 Sum_probs=100.6
Q ss_pred cccccccccCCCcCC----CCCHHHHHHHHHCCCCCCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcC
Q psy3307 2 QECLVSLKKQGFDDI----QMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERG 77 (130)
Q Consensus 2 ~~~~~~~~~~~f~~l----~l~~~i~~~l~~~~~~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~ 77 (130)
++...|.|..+|+++ ++++.+++++.+.||..|+++|.++|+.+++|+|+++++|||||||++|++|++..+....
T Consensus 16 ~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~ 95 (245)
T 3dkp_A 16 QGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPA 95 (245)
T ss_dssp ESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCC
T ss_pred cCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcc
Confidence 356688999999988 8999999999999999999999999999999999999999999999999999999885422
Q ss_pred CCCCCCCCCCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhcCCCceEEe
Q psy3307 78 PLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVV 129 (130)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~~~~~ 129 (130)
..++++||++||++|+.|+.+.++++....++++..+
T Consensus 96 ---------------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~ 132 (245)
T 3dkp_A 96 ---------------NKGFRALIISPTRELASQIHRELIKISEGTGFRIHMI 132 (245)
T ss_dssp ---------------SSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECC
T ss_pred ---------------cCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEE
Confidence 1136899999999999999999999998888776543
No 6
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.93 E-value=2.2e-25 Score=154.57 Aligned_cols=113 Identities=32% Similarity=0.444 Sum_probs=92.3
Q ss_pred CcccccccccCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCC
Q psy3307 1 MQECLVSLKKQGFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLP 80 (130)
Q Consensus 1 ~~~~~~~~~~~~f~~l~l~~~i~~~l~~~~~~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~ 80 (130)
|++.+.+.+..+|+++++++.+++++.+.||..|+++|.++++.+++|+|+++++|||+|||++|++|++..+.....
T Consensus 4 ~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~-- 81 (220)
T 1t6n_A 4 VKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTG-- 81 (220)
T ss_dssp ----------CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTT--
T ss_pred CCCCcccccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCC--
Confidence 356677788889999999999999999999999999999999999999999999999999999999999987643221
Q ss_pred CCCCCCCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhcC-CCceEEe
Q psy3307 81 TPPAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRS-QLRPCVV 129 (130)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~-~~~~~~~ 129 (130)
++++||++||++|+.|+.+.++++.+.. ++++..+
T Consensus 82 --------------~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~ 117 (220)
T 1t6n_A 82 --------------QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVF 117 (220)
T ss_dssp --------------CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEE
T ss_pred --------------CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEE
Confidence 2579999999999999999999998776 6766654
No 7
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.93 E-value=1.2e-25 Score=157.98 Aligned_cols=111 Identities=35% Similarity=0.393 Sum_probs=95.8
Q ss_pred ccccccccCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCC
Q psy3307 3 ECLVSLKKQGFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTP 82 (130)
Q Consensus 3 ~~~~~~~~~~f~~l~l~~~i~~~l~~~~~~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~ 82 (130)
+...+.+..+|+++++++.+++++.+.||..|+++|.++++.+++|+|+++++|||||||++|++|+++.+.....
T Consensus 22 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~---- 97 (237)
T 3bor_A 22 ESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFK---- 97 (237)
T ss_dssp -----CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSC----
T ss_pred cCCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCC----
Confidence 4456778889999999999999999999999999999999999999999999999999999999999988653221
Q ss_pred CCCCCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhcCCCceEEe
Q psy3307 83 PAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVV 129 (130)
Q Consensus 83 ~~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~~~~~ 129 (130)
++++||++||++|+.|+.+.+++++...++++..+
T Consensus 98 ------------~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~ 132 (237)
T 3bor_A 98 ------------ETQALVLAPTRELAQQIQKVILALGDYMGATCHAC 132 (237)
T ss_dssp ------------SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEE
T ss_pred ------------CceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEE
Confidence 26799999999999999999999998877776554
No 8
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.93 E-value=2.7e-25 Score=157.48 Aligned_cols=107 Identities=36% Similarity=0.582 Sum_probs=97.8
Q ss_pred ccccCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCC
Q psy3307 7 SLKKQGFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGR 86 (130)
Q Consensus 7 ~~~~~~f~~l~l~~~i~~~l~~~~~~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 86 (130)
+.+..+|+++++++.+.++++++||..|+++|.++++.+++|+|+++++|||||||++|++|++..+.....
T Consensus 39 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~-------- 110 (249)
T 3ber_A 39 EEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQ-------- 110 (249)
T ss_dssp HHHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCC--------
T ss_pred ccccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCC--------
Confidence 455778999999999999999999999999999999999999999999999999999999999998876542
Q ss_pred CCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhcCCCceEEe
Q psy3307 87 GYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVV 129 (130)
Q Consensus 87 ~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~~~~~ 129 (130)
++++||++||++|+.|+.+.+++++...++++..+
T Consensus 111 --------~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~ 145 (249)
T 3ber_A 111 --------RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVI 145 (249)
T ss_dssp --------SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred --------CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEE
Confidence 26799999999999999999999999888887665
No 9
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.93 E-value=1.3e-25 Score=156.47 Aligned_cols=116 Identities=32% Similarity=0.446 Sum_probs=97.0
Q ss_pred ccccccccCCCcC-CCCCHHHHHHHHHCCCCCCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCC
Q psy3307 3 ECLVSLKKQGFDD-IQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPT 81 (130)
Q Consensus 3 ~~~~~~~~~~f~~-l~l~~~i~~~l~~~~~~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~ 81 (130)
+...|.|..+|++ +++++.+++++.+.||..|+++|.++|+.+++|+|+++++|||||||++|++|++..+.......
T Consensus 11 ~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~- 89 (228)
T 3iuy_A 11 KRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISR- 89 (228)
T ss_dssp CCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC-------
T ss_pred cCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchh-
Confidence 5678999999999 89999999999999999999999999999999999999999999999999999999876432110
Q ss_pred CCCCCCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhcCCCceEEe
Q psy3307 82 PPAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVV 129 (130)
Q Consensus 82 ~~~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~~~~~ 129 (130)
....++++||++||++|+.|+.+.++++. ..++++..+
T Consensus 90 ---------~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~ 127 (228)
T 3iuy_A 90 ---------EQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICI 127 (228)
T ss_dssp ------------CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEE
T ss_pred ---------hccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEE
Confidence 01123789999999999999999999986 445665544
No 10
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.93 E-value=5.3e-25 Score=154.15 Aligned_cols=113 Identities=30% Similarity=0.439 Sum_probs=99.5
Q ss_pred ccccccCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCC
Q psy3307 5 LVSLKKQGFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPA 84 (130)
Q Consensus 5 ~~~~~~~~f~~l~l~~~i~~~l~~~~~~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~ 84 (130)
..+.+..+|+++++++.+++.+.+.|+..|+++|.++++.+++|+|+++++|||||||++|++|+++.+......
T Consensus 19 ~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~----- 93 (236)
T 2pl3_A 19 INVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWT----- 93 (236)
T ss_dssp CCGGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCC-----
T ss_pred CCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhccc-----
Confidence 345677889999999999999999999999999999999999999999999999999999999999998764311
Q ss_pred CCCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhcCCCceEEe
Q psy3307 85 GRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVV 129 (130)
Q Consensus 85 ~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~~~~~ 129 (130)
...++++||++||++|+.|+.+.++++....++++.++
T Consensus 94 -------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~ 131 (236)
T 2pl3_A 94 -------STDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLI 131 (236)
T ss_dssp -------GGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEE
T ss_pred -------ccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEE
Confidence 11236899999999999999999999998888877654
No 11
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.93 E-value=3.6e-25 Score=153.68 Aligned_cols=111 Identities=32% Similarity=0.458 Sum_probs=99.5
Q ss_pred ccccccccCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCC
Q psy3307 3 ECLVSLKKQGFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTP 82 (130)
Q Consensus 3 ~~~~~~~~~~f~~l~l~~~i~~~l~~~~~~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~ 82 (130)
+...+++..+|+++++++.+++.+.+.||..|+++|.++++.+++|+|+++.+|||+|||++|++|+++.+.....
T Consensus 6 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~---- 81 (224)
T 1qde_A 6 QTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVK---- 81 (224)
T ss_dssp CBSCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCC----
T ss_pred ccccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCC----
Confidence 4556778889999999999999999999999999999999999999999999999999999999999988754321
Q ss_pred CCCCCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhcCCCceEEe
Q psy3307 83 PAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVV 129 (130)
Q Consensus 83 ~~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~~~~~ 129 (130)
++++||++|+++|+.|+.+.++++....++++..+
T Consensus 82 ------------~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~ 116 (224)
T 1qde_A 82 ------------APQALMLAPTRELALQIQKVVMALAFHMDIKVHAC 116 (224)
T ss_dssp ------------SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEE
T ss_pred ------------CceEEEEECCHHHHHHHHHHHHHHhcccCceEEEE
Confidence 26899999999999999999999998888876654
No 12
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.93 E-value=4.2e-25 Score=153.26 Aligned_cols=105 Identities=32% Similarity=0.496 Sum_probs=92.1
Q ss_pred ccCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q psy3307 9 KKQGFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGY 88 (130)
Q Consensus 9 ~~~~f~~l~l~~~i~~~l~~~~~~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~ 88 (130)
+..+|+++++++.+++++++.|+..|+++|.++++.+++|+|+++++|||||||++|++|++..+.....
T Consensus 2 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~---------- 71 (219)
T 1q0u_A 2 AETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERA---------- 71 (219)
T ss_dssp --CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSC----------
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcC----------
Confidence 4467999999999999999999999999999999999999999999999999999999999988754321
Q ss_pred CCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhcC----CCceEEe
Q psy3307 89 PSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRS----QLRPCVV 129 (130)
Q Consensus 89 ~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~----~~~~~~~ 129 (130)
++++||++||++|+.|+.+.++++.... ++++..+
T Consensus 72 ------~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~ 110 (219)
T 1q0u_A 72 ------EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCL 110 (219)
T ss_dssp ------SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEE
T ss_pred ------CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEE
Confidence 2689999999999999999999998876 5555543
No 13
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.92 E-value=6.9e-25 Score=163.73 Aligned_cols=128 Identities=58% Similarity=0.931 Sum_probs=104.2
Q ss_pred cccccccccCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCC
Q psy3307 2 QECLVSLKKQGFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPT 81 (130)
Q Consensus 2 ~~~~~~~~~~~f~~l~l~~~i~~~l~~~~~~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~ 81 (130)
.+...|.++.+|+++++++.+.+++.+.||..|+|+|.++|+.+++|+|++++||||||||++|++|+++.+........
T Consensus 6 ~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~ 85 (417)
T 2i4i_A 6 TGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEA 85 (417)
T ss_dssp ESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHH
T ss_pred CCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccch
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999876432100
Q ss_pred CC--CCCCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhcCCCceEEe
Q psy3307 82 PP--AGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVV 129 (130)
Q Consensus 82 ~~--~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~~~~~ 129 (130)
.. ...........++++||++||++|+.|+++.++++....++++..+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~ 135 (417)
T 2i4i_A 86 LRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 135 (417)
T ss_dssp HHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEE
T ss_pred hhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEE
Confidence 00 0000001122347899999999999999999999998888877654
No 14
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.92 E-value=1e-24 Score=149.57 Aligned_cols=103 Identities=29% Similarity=0.517 Sum_probs=92.0
Q ss_pred CCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy3307 11 QGFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPS 90 (130)
Q Consensus 11 ~~f~~l~l~~~i~~~l~~~~~~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 90 (130)
.+|+++++++.+++++.+.||..|+++|.++++.+++|+|+++.+|||||||++|++|++..+.....
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~------------ 70 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKD------------ 70 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSC------------
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCC------------
Confidence 57999999999999999999999999999999999999999999999999999999999987643221
Q ss_pred CCCCCceEEEEcCcHHHHHHHHHHHHHHHhcC-CCceEEe
Q psy3307 91 RKKVFPLGLVLAPTRELATQIYDEAKKFAYRS-QLRPCVV 129 (130)
Q Consensus 91 ~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~-~~~~~~~ 129 (130)
++++||++||++|+.|+.+.++++.+.. ++++..+
T Consensus 71 ----~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~ 106 (206)
T 1vec_A 71 ----NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMAT 106 (206)
T ss_dssp ----SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEE
T ss_pred ----CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEE
Confidence 2689999999999999999999998876 6666543
No 15
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.92 E-value=2.6e-25 Score=157.29 Aligned_cols=114 Identities=52% Similarity=0.843 Sum_probs=97.7
Q ss_pred ccCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q psy3307 9 KKQGFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGY 88 (130)
Q Consensus 9 ~~~~f~~l~l~~~i~~~l~~~~~~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~ 88 (130)
+..+|+++++++.+++++.+.||..|+++|.++|+.+++|+|+++++|||||||++|++|++..+.........
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~------ 94 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQR------ 94 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC----------
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhcccccc------
Confidence 77889999999999999999999999999999999999999999999999999999999999998754321000
Q ss_pred CCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhcCCCceEEe
Q psy3307 89 PSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVV 129 (130)
Q Consensus 89 ~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~~~~~ 129 (130)
.....++++||++||++|+.|+.+.++++....++++..+
T Consensus 95 -~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~ 134 (253)
T 1wrb_A 95 -YSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVV 134 (253)
T ss_dssp ---CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEE
T ss_pred -ccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEE
Confidence 0112237899999999999999999999998888877654
No 16
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.91 E-value=7.5e-24 Score=151.04 Aligned_cols=108 Identities=29% Similarity=0.396 Sum_probs=91.6
Q ss_pred cCCCcCCC--CCHHHHHHHHHCCCCCCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q psy3307 10 KQGFDDIQ--MTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRG 87 (130)
Q Consensus 10 ~~~f~~l~--l~~~i~~~l~~~~~~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~ 87 (130)
..+|++++ +++.+++++++.||..|+++|.++++.++.|+|++++||||||||++|++|+++.+......
T Consensus 51 ~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~-------- 122 (262)
T 3ly5_A 51 DTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM-------- 122 (262)
T ss_dssp GGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCC--------
T ss_pred cCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcccc--------
Confidence 34577777 99999999999999999999999999999999999999999999999999999998864321
Q ss_pred CCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhcCCCceEEe
Q psy3307 88 YPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVV 129 (130)
Q Consensus 88 ~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~~~~~ 129 (130)
...+.++||++||++|+.|+.+.++++....++++..+
T Consensus 123 ----~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~ 160 (262)
T 3ly5_A 123 ----PRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLI 160 (262)
T ss_dssp ----GGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEE
T ss_pred ----ccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEE
Confidence 11236799999999999999999999999888877654
No 17
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.90 E-value=3.9e-23 Score=141.60 Aligned_cols=97 Identities=35% Similarity=0.537 Sum_probs=86.9
Q ss_pred CCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCC
Q psy3307 12 GFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSR 91 (130)
Q Consensus 12 ~f~~l~l~~~i~~~l~~~~~~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 91 (130)
+|+++++++.+.+.+++.|+..|+++|.++++.+++|+|+++.+|||||||++|++|++..+.....
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~------------- 68 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQE------------- 68 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCC-------------
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccc-------------
Confidence 6999999999999999999999999999999999999999999999999999999999988754221
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHHHHHHhc
Q psy3307 92 KKVFPLGLVLAPTRELATQIYDEAKKFAYR 121 (130)
Q Consensus 92 ~~~~~~~lil~Pt~~La~q~~~~~~~l~~~ 121 (130)
...+++++|++|+++|+.|+.+.++++...
T Consensus 69 ~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 98 (207)
T 2gxq_A 69 RGRKPRALVLTPTRELALQVASELTAVAPH 98 (207)
T ss_dssp TTCCCSEEEECSSHHHHHHHHHHHHHHCTT
T ss_pred cCCCCcEEEEECCHHHHHHHHHHHHHHhhc
Confidence 112378999999999999999999998765
No 18
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.90 E-value=3.5e-23 Score=154.47 Aligned_cols=106 Identities=33% Similarity=0.429 Sum_probs=94.9
Q ss_pred cccCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q psy3307 8 LKKQGFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRG 87 (130)
Q Consensus 8 ~~~~~f~~l~l~~~i~~~l~~~~~~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~ 87 (130)
.+..+|+++++++.+++++.+.||..|+++|.++++.+++|+|+++++|||||||++|++|+++.+.....
T Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~--------- 104 (410)
T 2j0s_A 34 DVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVR--------- 104 (410)
T ss_dssp CCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSC---------
T ss_pred cCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccC---------
Confidence 45678999999999999999999999999999999999999999999999999999999999987643211
Q ss_pred CCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhcCCCceEEe
Q psy3307 88 YPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVV 129 (130)
Q Consensus 88 ~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~~~~~ 129 (130)
+.++||++||++|+.|+.+.+++++...++++..+
T Consensus 105 -------~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~ 139 (410)
T 2j0s_A 105 -------ETQALILAPTRELAVQIQKGLLALGDYMNVQCHAC 139 (410)
T ss_dssp -------SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEE
T ss_pred -------CceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEE
Confidence 26799999999999999999999999888877654
No 19
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.89 E-value=9.6e-23 Score=151.55 Aligned_cols=110 Identities=34% Similarity=0.529 Sum_probs=93.4
Q ss_pred cccccccCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCC
Q psy3307 4 CLVSLKKQGFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPP 83 (130)
Q Consensus 4 ~~~~~~~~~f~~l~l~~~i~~~l~~~~~~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~ 83 (130)
...+....+|+++++++.+++++.+.||..|+++|.++++.+++|+|+++.+|||+|||++|++|++..+.....
T Consensus 14 ~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~----- 88 (400)
T 1s2m_A 14 DVLNTKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLN----- 88 (400)
T ss_dssp -------CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSC-----
T ss_pred cccccccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccC-----
Confidence 345556678999999999999999999999999999999999999999999999999999999999987643221
Q ss_pred CCCCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhcCCCceEEe
Q psy3307 84 AGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVV 129 (130)
Q Consensus 84 ~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~~~~~ 129 (130)
+.+++|++|+++|+.|+.+.++++....++++..+
T Consensus 89 -----------~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~ 123 (400)
T 1s2m_A 89 -----------KIQALIMVPTRELALQTSQVVRTLGKHCGISCMVT 123 (400)
T ss_dssp -----------SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEE
T ss_pred -----------CccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEE
Confidence 26799999999999999999999998888876654
No 20
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.89 E-value=1.6e-22 Score=149.34 Aligned_cols=106 Identities=26% Similarity=0.531 Sum_probs=93.4
Q ss_pred cccCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHhHHhcC--CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCC
Q psy3307 8 LKKQGFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISG--RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAG 85 (130)
Q Consensus 8 ~~~~~f~~l~l~~~i~~~l~~~~~~~~t~~Q~~~i~~~~~g--~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~ 85 (130)
....+|+++++++.+++++.+.|+..|+|+|.++++.+++| +++++++|||+|||++|++|++..+.....
T Consensus 2 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~------- 74 (395)
T 3pey_A 2 AMAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDA------- 74 (395)
T ss_dssp --CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCC-------
T ss_pred ccccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCC-------
Confidence 34689999999999999999999999999999999999988 999999999999999999999987653321
Q ss_pred CCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhcCCCceEEe
Q psy3307 86 RGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVV 129 (130)
Q Consensus 86 ~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~~~~~ 129 (130)
++++||++|+++|+.|+.+.+++++...++.+..+
T Consensus 75 ---------~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~ 109 (395)
T 3pey_A 75 ---------SPQAICLAPSRELARQTLEVVQEMGKFTKITSQLI 109 (395)
T ss_dssp ---------SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEE
T ss_pred ---------CccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEE
Confidence 26799999999999999999999998877766543
No 21
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.89 E-value=1.1e-22 Score=150.43 Aligned_cols=109 Identities=32% Similarity=0.463 Sum_probs=97.4
Q ss_pred ccccccCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCC
Q psy3307 5 LVSLKKQGFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPA 84 (130)
Q Consensus 5 ~~~~~~~~f~~l~l~~~i~~~l~~~~~~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~ 84 (130)
....+..+|+++++++.+++++.+.|+..|+++|.++++.+++|+|+++.+|||+|||++|++|++..+.....
T Consensus 15 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~------ 88 (394)
T 1fuu_A 15 NYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVK------ 88 (394)
T ss_dssp SSCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCC------
T ss_pred hcccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCC------
Confidence 45566788999999999999999999999999999999999999999999999999999999999987654321
Q ss_pred CCCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhcCCCceEEe
Q psy3307 85 GRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVV 129 (130)
Q Consensus 85 ~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~~~~~ 129 (130)
++++||++|+++|+.|+.+.++++....++++..+
T Consensus 89 ----------~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~ 123 (394)
T 1fuu_A 89 ----------APQALMLAPTRELALQIQKVVMALAFHMDIKVHAC 123 (394)
T ss_dssp ----------SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEE
T ss_pred ----------CCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEE
Confidence 26899999999999999999999998888877654
No 22
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.88 E-value=4.3e-22 Score=148.09 Aligned_cols=104 Identities=25% Similarity=0.497 Sum_probs=91.5
Q ss_pred cccCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHhHHhcC--CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCC
Q psy3307 8 LKKQGFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISG--RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAG 85 (130)
Q Consensus 8 ~~~~~f~~l~l~~~i~~~l~~~~~~~~t~~Q~~~i~~~~~g--~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~ 85 (130)
.+..+|+++++++.+++++.+.||..|+++|.++++.+++| +|+++++|||+|||++|++|++..+.....
T Consensus 22 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~------- 94 (412)
T 3fht_A 22 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANK------- 94 (412)
T ss_dssp CCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSC-------
T ss_pred cccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCC-------
Confidence 45678999999999999999999999999999999999987 999999999999999999999987754322
Q ss_pred CCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhcC-CCceE
Q psy3307 86 RGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRS-QLRPC 127 (130)
Q Consensus 86 ~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~-~~~~~ 127 (130)
++++||++|+++|+.|+.+.++++.... ++++.
T Consensus 95 ---------~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 128 (412)
T 3fht_A 95 ---------YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLA 128 (412)
T ss_dssp ---------SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEE
T ss_pred ---------CCCEEEECCCHHHHHHHHHHHHHHHhhcccceEE
Confidence 2689999999999999999999998764 44443
No 23
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.88 E-value=4.8e-22 Score=148.06 Aligned_cols=109 Identities=35% Similarity=0.403 Sum_probs=96.7
Q ss_pred ccccccCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCC
Q psy3307 5 LVSLKKQGFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPA 84 (130)
Q Consensus 5 ~~~~~~~~f~~l~l~~~i~~~l~~~~~~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~ 84 (130)
..+....+|+++++++.+++.+.+.|+..|+++|.++|+.+++|+|+++.+|||||||++|++|+++.+.....
T Consensus 34 ~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~------ 107 (414)
T 3eiq_A 34 NWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLK------ 107 (414)
T ss_dssp CCCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSC------
T ss_pred CccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCC------
Confidence 34556678999999999999999999999999999999999999999999999999999999999987654321
Q ss_pred CCCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhcCCCceEEe
Q psy3307 85 GRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVV 129 (130)
Q Consensus 85 ~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~~~~~ 129 (130)
+.+++|++|+++|+.|+.+.+++++...++.+..+
T Consensus 108 ----------~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~ 142 (414)
T 3eiq_A 108 ----------ATQALVLAPTRELAQQIQKVVMALGDYMGASCHAC 142 (414)
T ss_dssp ----------SCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEC
T ss_pred ----------ceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEE
Confidence 26799999999999999999999998888776654
No 24
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.88 E-value=4.4e-22 Score=147.32 Aligned_cols=105 Identities=32% Similarity=0.437 Sum_probs=91.0
Q ss_pred ccCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q psy3307 9 KKQGFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGY 88 (130)
Q Consensus 9 ~~~~f~~l~l~~~i~~~l~~~~~~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~ 88 (130)
...+|+++++++.++++|.+.||..|+|+|.++++.+++|+|+++.+|||+|||++|++|++..+.....
T Consensus 6 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~---------- 75 (391)
T 1xti_A 6 MSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTG---------- 75 (391)
T ss_dssp ---CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTT----------
T ss_pred CCCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCC----------
Confidence 3467999999999999999999999999999999999999999999999999999999999987643221
Q ss_pred CCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhcC-CCceEEe
Q psy3307 89 PSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRS-QLRPCVV 129 (130)
Q Consensus 89 ~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~-~~~~~~~ 129 (130)
+.++||++|+++|+.|+.+.++++.... ++++..+
T Consensus 76 ------~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~ 111 (391)
T 1xti_A 76 ------QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVF 111 (391)
T ss_dssp ------CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEE
T ss_pred ------CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEE
Confidence 2679999999999999999999998775 6666544
No 25
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.88 E-value=4.4e-22 Score=151.81 Aligned_cols=103 Identities=25% Similarity=0.502 Sum_probs=90.0
Q ss_pred ccCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHhHHhcC--CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCC
Q psy3307 9 KKQGFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISG--RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGR 86 (130)
Q Consensus 9 ~~~~f~~l~l~~~i~~~l~~~~~~~~t~~Q~~~i~~~~~g--~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 86 (130)
+..+|++++|++.+++++.++||..|+++|.++|+.++.| +|++++||||||||++|++|++..+.....
T Consensus 90 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~-------- 161 (479)
T 3fmp_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANK-------- 161 (479)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSC--------
T ss_pred CcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCC--------
Confidence 3568999999999999999999999999999999999987 999999999999999999999986643321
Q ss_pred CCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhcC-CCceE
Q psy3307 87 GYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRS-QLRPC 127 (130)
Q Consensus 87 ~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~-~~~~~ 127 (130)
++++||++||++|+.|+.+.++++.+.. ++.+.
T Consensus 162 --------~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~ 195 (479)
T 3fmp_B 162 --------YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLA 195 (479)
T ss_dssp --------SCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEE
T ss_pred --------CCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEE
Confidence 2689999999999999999999998753 34433
No 26
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.86 E-value=2.9e-21 Score=141.39 Aligned_cols=104 Identities=32% Similarity=0.539 Sum_probs=92.1
Q ss_pred ccCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHhHHhcC-CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q psy3307 9 KKQGFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISG-RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRG 87 (130)
Q Consensus 9 ~~~~f~~l~l~~~i~~~l~~~~~~~~t~~Q~~~i~~~~~g-~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~ 87 (130)
...+|+++++++.+.+++++.|+..|+|+|.++++.+++| +++++.+|||+|||++|++|++..+....
T Consensus 4 ~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~---------- 73 (367)
T 1hv8_A 4 EYMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENN---------- 73 (367)
T ss_dssp CCCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSS----------
T ss_pred ccCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccC----------
Confidence 4567999999999999999999999999999999999988 79999999999999999999988764321
Q ss_pred CCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhcCCCceEEe
Q psy3307 88 YPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVV 129 (130)
Q Consensus 88 ~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~~~~~ 129 (130)
+.+++|++|+++|+.|+.+.++++....++++..+
T Consensus 74 -------~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~ 108 (367)
T 1hv8_A 74 -------GIEAIILTPTRELAIQVADEIESLKGNKNLKIAKI 108 (367)
T ss_dssp -------SCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEE
T ss_pred -------CCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEE
Confidence 26799999999999999999999988777776543
No 27
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.85 E-value=6.9e-21 Score=148.48 Aligned_cols=101 Identities=35% Similarity=0.479 Sum_probs=87.7
Q ss_pred cccCCCcCCC----CCHHHHHHHHHCCCCCCcHHHHHHHhHHh--cCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCC
Q psy3307 8 LKKQGFDDIQ----MTEIITNNIALARYDKPTPVQKYAIPVII--SGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPT 81 (130)
Q Consensus 8 ~~~~~f~~l~----l~~~i~~~l~~~~~~~~t~~Q~~~i~~~~--~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~ 81 (130)
....+|+++. |++++++++.++||..|+|+|.++|+.++ .|+|++++||||||||++|++|+++.+......
T Consensus 14 ~~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~-- 91 (579)
T 3sqw_A 14 SKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD-- 91 (579)
T ss_dssp CCCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS--
T ss_pred CCCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcccc--
Confidence 3445677665 99999999999999999999999999999 789999999999999999999999998875421
Q ss_pred CCCCCCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHh
Q psy3307 82 PPAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAY 120 (130)
Q Consensus 82 ~~~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~ 120 (130)
...++++||++||++|+.|+.+.++++..
T Consensus 92 ----------~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~ 120 (579)
T 3sqw_A 92 ----------SQYMVKAVIVAPTRDLALQIEAEVKKIHD 120 (579)
T ss_dssp ----------STTSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred ----------ccCCCeEEEEcchHHHHHHHHHHHHHHHh
Confidence 11236899999999999999999999864
No 28
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.84 E-value=1.2e-20 Score=146.27 Aligned_cols=99 Identities=34% Similarity=0.485 Sum_probs=85.9
Q ss_pred cCCCcCCC----CCHHHHHHHHHCCCCCCcHHHHHHHhHHh--cCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCC
Q psy3307 10 KQGFDDIQ----MTEIITNNIALARYDKPTPVQKYAIPVII--SGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPP 83 (130)
Q Consensus 10 ~~~f~~l~----l~~~i~~~l~~~~~~~~t~~Q~~~i~~~~--~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~ 83 (130)
..+|+++. |++++++++.+.||..|+|+|.++|+.++ .|+|++++||||||||++|++|+++.+......
T Consensus 67 ~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~---- 142 (563)
T 3i5x_A 67 EVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD---- 142 (563)
T ss_dssp CCCHHHHHHTTSSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS----
T ss_pred CcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc----
Confidence 34566664 99999999999999999999999999999 678999999999999999999999999875421
Q ss_pred CCCCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHh
Q psy3307 84 AGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAY 120 (130)
Q Consensus 84 ~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~ 120 (130)
...++++||++||++|+.|+.+.++++..
T Consensus 143 --------~~~~~~~lil~Ptr~La~Q~~~~~~~~~~ 171 (563)
T 3i5x_A 143 --------SQYMVKAVIVAPTRDLALQIEAEVKKIHD 171 (563)
T ss_dssp --------STTSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred --------ccCCeeEEEEcCcHHHHHHHHHHHHHHHh
Confidence 11236899999999999999999998755
No 29
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.82 E-value=1.6e-19 Score=130.88 Aligned_cols=90 Identities=37% Similarity=0.546 Sum_probs=82.6
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCce
Q psy3307 18 MTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPL 97 (130)
Q Consensus 18 l~~~i~~~l~~~~~~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (130)
|++++.++++++|+..|+|+|.++++.+++|+++++.+|||+|||++|++|++.. . .+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~----~------------------~~ 58 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL----G------------------MK 58 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH----T------------------CC
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh----c------------------CC
Confidence 5789999999999999999999999999999999999999999999999998763 1 56
Q ss_pred EEEEcCcHHHHHHHHHHHHHHHhcCCCceEEe
Q psy3307 98 GLVLAPTRELATQIYDEAKKFAYRSQLRPCVV 129 (130)
Q Consensus 98 ~lil~Pt~~La~q~~~~~~~l~~~~~~~~~~~ 129 (130)
++|++|+++|+.|+.+.++++....++++..+
T Consensus 59 ~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~ 90 (337)
T 2z0m_A 59 SLVVTPTRELTRQVASHIRDIGRYMDTKVAEV 90 (337)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSCCCEEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEE
Confidence 99999999999999999999998888877654
No 30
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.79 E-value=1.1e-18 Score=138.84 Aligned_cols=101 Identities=20% Similarity=0.315 Sum_probs=88.6
Q ss_pred ccCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHhH-HhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q psy3307 9 KKQGFDDIQMTEIITNNIALARYDKPTPVQKYAIPV-IISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRG 87 (130)
Q Consensus 9 ~~~~f~~l~l~~~i~~~l~~~~~~~~t~~Q~~~i~~-~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~ 87 (130)
...+|++++|++.+.+.+++.||..++++|.++++. +.+|++++++||||||||++|.+++++.+....
T Consensus 6 ~~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~---------- 75 (715)
T 2va8_A 6 EWMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNG---------- 75 (715)
T ss_dssp CCCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC----------
T ss_pred ccCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCC----------
Confidence 345799999999999999999999999999999999 789999999999999999999999998876432
Q ss_pred CCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhcCCCceEE
Q psy3307 88 YPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCV 128 (130)
Q Consensus 88 ~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~~~~ 128 (130)
.+++|++|+++|+.|+.+.++++.. .|+++..
T Consensus 76 --------~~il~i~P~r~La~q~~~~~~~~~~-~g~~v~~ 107 (715)
T 2va8_A 76 --------GKAIYVTPLRALTNEKYLTFKDWEL-IGFKVAM 107 (715)
T ss_dssp --------SEEEEECSCHHHHHHHHHHHGGGGG-GTCCEEE
T ss_pred --------CeEEEEeCcHHHHHHHHHHHHHhhc-CCCEEEE
Confidence 5799999999999999999965543 4666543
No 31
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.78 E-value=5.8e-19 Score=140.68 Aligned_cols=99 Identities=20% Similarity=0.358 Sum_probs=88.4
Q ss_pred CCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHhH-HhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy3307 12 GFDDIQMTEIITNNIALARYDKPTPVQKYAIPV-IISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPS 90 (130)
Q Consensus 12 ~f~~l~l~~~i~~~l~~~~~~~~t~~Q~~~i~~-~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 90 (130)
+|++++|++.+.+.+++.||..++++|.++++. +.+|+++++++|||||||++|.+++++.+....
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~------------- 68 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQG------------- 68 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHC-------------
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCC-------------
Confidence 599999999999999999999999999999998 889999999999999999999999998887543
Q ss_pred CCCCCceEEEEcCcHHHHHHHHHHHHHHHhcCCCceEEe
Q psy3307 91 RKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVV 129 (130)
Q Consensus 91 ~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~~~~~ 129 (130)
.+++|++|+++|+.|+.+.++++.+ .|+++..+
T Consensus 69 -----~~~l~i~P~raLa~q~~~~~~~l~~-~g~~v~~~ 101 (720)
T 2zj8_A 69 -----GKAVYIVPLKALAEEKFQEFQDWEK-IGLRVAMA 101 (720)
T ss_dssp -----SEEEEECSSGGGHHHHHHHTGGGGG-GTCCEEEE
T ss_pred -----CEEEEEcCcHHHHHHHHHHHHHHHh-cCCEEEEe
Confidence 5799999999999999999976654 36666543
No 32
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.77 E-value=1e-18 Score=135.25 Aligned_cols=87 Identities=22% Similarity=0.318 Sum_probs=80.0
Q ss_pred cCCCcCCCCCHHHHHHHHH-CCCCCCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q psy3307 10 KQGFDDIQMTEIITNNIAL-ARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGY 88 (130)
Q Consensus 10 ~~~f~~l~l~~~i~~~l~~-~~~~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~ 88 (130)
+..|++++|++.+.+.+++ +||..++|+|.++|+.+++|+|+++.+|||+|||++|++|++.. .
T Consensus 1 ~~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~----~----------- 65 (523)
T 1oyw_A 1 MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL----N----------- 65 (523)
T ss_dssp CCCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS----S-----------
T ss_pred CCChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh----C-----------
Confidence 4689999999999999998 89999999999999999999999999999999999999999742 1
Q ss_pred CCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q psy3307 89 PSRKKVFPLGLVLAPTRELATQIYDEAKKF 118 (130)
Q Consensus 89 ~~~~~~~~~~lil~Pt~~La~q~~~~~~~l 118 (130)
.++||++|+++|+.|+.+.++++
T Consensus 66 -------g~~lvi~P~~aL~~q~~~~l~~~ 88 (523)
T 1oyw_A 66 -------GLTVVVSPLISLMKDQVDQLQAN 88 (523)
T ss_dssp -------SEEEEECSCHHHHHHHHHHHHHT
T ss_pred -------CCEEEECChHHHHHHHHHHHHHc
Confidence 46999999999999999998875
No 33
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.77 E-value=1.4e-18 Score=130.07 Aligned_cols=88 Identities=19% Similarity=0.123 Sum_probs=75.0
Q ss_pred HHHHHHHH-CCCCCCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEE
Q psy3307 21 IITNNIAL-ARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGL 99 (130)
Q Consensus 21 ~i~~~l~~-~~~~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 99 (130)
++.+.+++ .++ .|+|+|.++++.+++|+|+++++|||||||++|++|++..... ++++|
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~-------------------~~~~l 68 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK-------------------GKKSA 68 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTT-------------------TCCEE
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcC-------------------CCEEE
Confidence 44555555 466 7999999999999999999999999999999999998876621 16799
Q ss_pred EEcCcHHHHHHHHHHHHHHHhcCCCceEEe
Q psy3307 100 VLAPTRELATQIYDEAKKFAYRSQLRPCVV 129 (130)
Q Consensus 100 il~Pt~~La~q~~~~~~~l~~~~~~~~~~~ 129 (130)
|++||++|+.|+.+.+++++. .++++..+
T Consensus 69 il~Pt~~L~~q~~~~~~~~~~-~~~~v~~~ 97 (414)
T 3oiy_A 69 LVFPTVTLVKQTLERLQKLAD-EKVKIFGF 97 (414)
T ss_dssp EEESSHHHHHHHHHHHHHHCC-SSCCEEEC
T ss_pred EEECCHHHHHHHHHHHHHHcc-CCceEEEE
Confidence 999999999999999999988 77777654
No 34
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.76 E-value=2.5e-19 Score=138.02 Aligned_cols=102 Identities=25% Similarity=0.394 Sum_probs=71.7
Q ss_pred cCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHhHHhcC--CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q psy3307 10 KQGFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISG--RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRG 87 (130)
Q Consensus 10 ~~~f~~l~l~~~i~~~l~~~~~~~~t~~Q~~~i~~~~~g--~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~ 87 (130)
...|...++++.+++.+.+.|+..|+++|.++|+.+++| +++++++|||||||++|+++++..+.....
T Consensus 118 l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~--------- 188 (508)
T 3fho_A 118 XXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVP--------- 188 (508)
T ss_dssp ---------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCC---------
T ss_pred cccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCC---------
Confidence 444666778899999999999999999999999999998 999999999999999999999988754322
Q ss_pred CCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhcCCCceE
Q psy3307 88 YPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPC 127 (130)
Q Consensus 88 ~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~~~ 127 (130)
++++||++|+++|+.|+.+.++++....++.+.
T Consensus 189 -------~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~ 221 (508)
T 3fho_A 189 -------KPQAICLAPSRELARQIMDVVTEMGKYTEVKTA 221 (508)
T ss_dssp -------SCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEE
T ss_pred -------CceEEEEECcHHHHHHHHHHHHHhCCccCeeEE
Confidence 267999999999999999999999877766544
No 35
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.76 E-value=3.4e-18 Score=134.02 Aligned_cols=84 Identities=23% Similarity=0.362 Sum_probs=76.9
Q ss_pred CcCCCCCHHHHHHHHH-CCCCCCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCC
Q psy3307 13 FDDIQMTEIITNNIAL-ARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSR 91 (130)
Q Consensus 13 f~~l~l~~~i~~~l~~-~~~~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 91 (130)
+.++++++.+.+.|++ +||..|+|+|.++|+.+++|+|+++.+|||+|||++|.+|++.. .
T Consensus 23 ~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~----~-------------- 84 (591)
T 2v1x_A 23 KEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS----D-------------- 84 (591)
T ss_dssp CSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS----S--------------
T ss_pred cccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc----C--------------
Confidence 3468899999999998 69999999999999999999999999999999999999999751 1
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHHHHH
Q psy3307 92 KKVFPLGLVLAPTRELATQIYDEAKKF 118 (130)
Q Consensus 92 ~~~~~~~lil~Pt~~La~q~~~~~~~l 118 (130)
.++||++|+++|+.|+.+.++++
T Consensus 85 ----g~~lVisP~~~L~~q~~~~l~~~ 107 (591)
T 2v1x_A 85 ----GFTLVICPLISLMEDQLMVLKQL 107 (591)
T ss_dssp ----SEEEEECSCHHHHHHHHHHHHHH
T ss_pred ----CcEEEEeCHHHHHHHHHHHHHhc
Confidence 47999999999999999999887
No 36
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.74 E-value=8.8e-19 Score=139.28 Aligned_cols=97 Identities=20% Similarity=0.321 Sum_probs=83.4
Q ss_pred CCcCCC--CCHHHHHHHHHCCCCCCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCC
Q psy3307 12 GFDDIQ--MTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYP 89 (130)
Q Consensus 12 ~f~~l~--l~~~i~~~l~~~~~~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~ 89 (130)
+|++++ |++.+.+.+++.||+.++++|.++++.+.+|+++++++|||||||++|.++++..+...
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~------------- 68 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKG------------- 68 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTT-------------
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-------------
Confidence 688999 99999999999999999999999999999999999999999999999999999887631
Q ss_pred CCCCCCceEEEEcCcHHHHHHHHHHHHHHHhcCCCceEE
Q psy3307 90 SRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCV 128 (130)
Q Consensus 90 ~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~~~~ 128 (130)
.+++|++|+++|+.|+.+.++++. ..|+++..
T Consensus 69 ------~~~l~i~P~r~La~q~~~~~~~~~-~~g~~v~~ 100 (702)
T 2p6r_A 69 ------GKSLYVVPLRALAGEKYESFKKWE-KIGLRIGI 100 (702)
T ss_dssp ------CCEEEEESSHHHHHHHHHHHTTTT-TTTCCEEE
T ss_pred ------CcEEEEeCcHHHHHHHHHHHHHHH-hcCCEEEE
Confidence 479999999999999999996554 34666654
No 37
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.73 E-value=3.2e-17 Score=129.69 Aligned_cols=93 Identities=19% Similarity=0.108 Sum_probs=76.9
Q ss_pred HHHHHHCCCCCCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEc
Q psy3307 23 TNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLA 102 (130)
Q Consensus 23 ~~~l~~~~~~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 102 (130)
.+++..+|+..|+++|.++++.+++|+|+++++|||+|||++|++|+++.+...... .+.++||++
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~--------------~~~~~lvl~ 68 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG--------------QKGKVVFFA 68 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTT--------------CCCCEEEEC
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccC--------------CCCeEEEEE
Confidence 456788999999999999999999999999999999999999999999988764311 115799999
Q ss_pred CcHHHHHHHHHHHHHHHhcCCCceEEe
Q psy3307 103 PTRELATQIYDEAKKFAYRSQLRPCVV 129 (130)
Q Consensus 103 Pt~~La~q~~~~~~~l~~~~~~~~~~~ 129 (130)
||++|+.|+.+.+++++...++++..+
T Consensus 69 Pt~~L~~Q~~~~~~~~~~~~~~~v~~~ 95 (696)
T 2ykg_A 69 NQIPVYEQNKSVFSKYFERHGYRVTGI 95 (696)
T ss_dssp SSHHHHHHHHHHHHHHTTTTTCCEEEE
T ss_pred CCHHHHHHHHHHHHHHhccCCceEEEE
Confidence 999999999999999998888887655
No 38
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.72 E-value=2.9e-17 Score=131.77 Aligned_cols=81 Identities=21% Similarity=0.114 Sum_probs=73.1
Q ss_pred HCCCCCCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEcCcHHH
Q psy3307 28 LARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTREL 107 (130)
Q Consensus 28 ~~~~~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 107 (130)
.+|+ .||++|..++|.++.|+ ++.++||+|||++|.+|++..... ++.++|++||++|
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~-------------------g~~vlVltptreL 136 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT-------------------GKGVHVVTVNEYL 136 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT-------------------SSCEEEEESSHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc-------------------CCCEEEEeCCHHH
Confidence 5799 99999999999999999 899999999999999999854322 1469999999999
Q ss_pred HHHHHHHHHHHHhcCCCceEEeC
Q psy3307 108 ATQIYDEAKKFAYRSQLRPCVVL 130 (130)
Q Consensus 108 a~q~~~~~~~l~~~~~~~~~~~~ 130 (130)
|.|..+++..+.+.+|+++.+++
T Consensus 137 A~qd~e~~~~l~~~lgl~v~~i~ 159 (844)
T 1tf5_A 137 ASRDAEQMGKIFEFLGLTVGLNL 159 (844)
T ss_dssp HHHHHHHHHHHHHHTTCCEEECC
T ss_pred HHHHHHHHHHHHhhcCCeEEEEe
Confidence 99999999999999999998875
No 39
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.71 E-value=7.6e-17 Score=123.66 Aligned_cols=83 Identities=18% Similarity=0.103 Sum_probs=73.9
Q ss_pred CCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEcCcHHHHHHHH
Q psy3307 33 KPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIY 112 (130)
Q Consensus 33 ~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~q~~ 112 (130)
.|+|+|.++++.+++|+|+++.+|||+|||++|++|+++.+..... ..+.++||++||++|+.|+.
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~--------------~~~~~~lil~P~~~L~~q~~ 69 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPC--------------GQKGKVVFFANQIPVYEQQA 69 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS--------------SCCCCEEEECSSHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhccc--------------CCCCEEEEEeCCHHHHHHHH
Confidence 6999999999999999999999999999999999999998876431 11267999999999999999
Q ss_pred HHHHHHHhcCCCceEEe
Q psy3307 113 DEAKKFAYRSQLRPCVV 129 (130)
Q Consensus 113 ~~~~~l~~~~~~~~~~~ 129 (130)
+.++++....++++..+
T Consensus 70 ~~~~~~~~~~~~~~~~~ 86 (555)
T 3tbk_A 70 TVFSRYFERLGYNIASI 86 (555)
T ss_dssp HHHHHHHHTTTCCEEEE
T ss_pred HHHHHHhccCCcEEEEE
Confidence 99999999888887765
No 40
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.70 E-value=8.3e-17 Score=123.72 Aligned_cols=85 Identities=20% Similarity=0.128 Sum_probs=72.7
Q ss_pred CCCCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEcCcHHHHHH
Q psy3307 31 YDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQ 110 (130)
Q Consensus 31 ~~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~q 110 (130)
...|+|+|.++++.+++|+|+++.+|||+|||++|++|+++.+..... ..++++||++||++|+.|
T Consensus 5 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~--------------~~~~~~lil~P~~~L~~q 70 (556)
T 4a2p_A 5 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA--------------GRKAKVVFLATKVPVYEQ 70 (556)
T ss_dssp ---CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS--------------SCCCCEEEECSSHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcc--------------cCCCeEEEEeCCHHHHHH
Confidence 347999999999999999999999999999999999999998876431 112679999999999999
Q ss_pred HHHHHHHHHhcCCCceEEe
Q psy3307 111 IYDEAKKFAYRSQLRPCVV 129 (130)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~ 129 (130)
+.+.++++....++++..+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~ 89 (556)
T 4a2p_A 71 QKNVFKHHFERQGYSVQGI 89 (556)
T ss_dssp HHHHHHHHHGGGTCCEEEC
T ss_pred HHHHHHHHhcccCceEEEE
Confidence 9999999998888887664
No 41
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.69 E-value=1.3e-16 Score=131.86 Aligned_cols=97 Identities=21% Similarity=0.153 Sum_probs=79.8
Q ss_pred CCcCCCCCHHH-----HHHH-HHCCCCCCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCC
Q psy3307 12 GFDDIQMTEII-----TNNI-ALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAG 85 (130)
Q Consensus 12 ~f~~l~l~~~i-----~~~l-~~~~~~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~ 85 (130)
.+...++++.. .+.+ +.+||. | ++|.++|+.+++|+|++++||||||||+ |.+|++..+....
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~~-------- 99 (1054)
T 1gku_B 31 AASLCLFPEDFLLKEFVEFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALKG-------- 99 (1054)
T ss_dssp CCCCSCCTTHHHHHHHHHHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTTS--------
T ss_pred cccccccccccchHHHHHHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhcC--------
Confidence 34455554433 2333 348998 9 9999999999999999999999999998 9999998876532
Q ss_pred CCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhcCCC----ceEEe
Q psy3307 86 RGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQL----RPCVV 129 (130)
Q Consensus 86 ~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~----~~~~~ 129 (130)
+++||++||++|+.|+.+.+++++..+++ ++.++
T Consensus 100 ----------~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~ 137 (1054)
T 1gku_B 100 ----------KRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYY 137 (1054)
T ss_dssp ----------CCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEEC
T ss_pred ----------CeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEE
Confidence 67999999999999999999999998888 66554
No 42
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.68 E-value=2.5e-16 Score=126.85 Aligned_cols=89 Identities=19% Similarity=0.115 Sum_probs=74.3
Q ss_pred HCCCCCCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEcCcHHH
Q psy3307 28 LARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTREL 107 (130)
Q Consensus 28 ~~~~~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 107 (130)
..|+..|+|+|.++++.+++|+|+++++|||+|||++|++|++..+..... ..+.++||++||++|
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~--------------~~~~~~Lvl~Pt~~L 308 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA--------------GRKAKVVFLATKVPV 308 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS--------------SCCCCEEEECSSHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccc--------------cCCCeEEEEeCCHHH
Confidence 356789999999999999999999999999999999999999998876431 112679999999999
Q ss_pred HHHHHHHHHHHHhcCCCceEEeC
Q psy3307 108 ATQIYDEAKKFAYRSQLRPCVVL 130 (130)
Q Consensus 108 a~q~~~~~~~l~~~~~~~~~~~~ 130 (130)
+.|+.+.++++....++++..++
T Consensus 309 ~~Q~~~~~~~~~~~~~~~v~~~~ 331 (797)
T 4a2q_A 309 YEQQKNVFKHHFERQGYSVQGIS 331 (797)
T ss_dssp HHHHHHHHHHHHGGGTCCEEEEC
T ss_pred HHHHHHHHHHhcccCCceEEEEe
Confidence 99999999999988888877653
No 43
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.67 E-value=5.2e-16 Score=124.77 Aligned_cols=90 Identities=22% Similarity=0.204 Sum_probs=79.0
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHhHHhcC------CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q psy3307 20 EIITNNIALARYDKPTPVQKYAIPVIISG------RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKK 93 (130)
Q Consensus 20 ~~i~~~l~~~~~~~~t~~Q~~~i~~~~~g------~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 93 (130)
+.+.+.++.++| .+|++|.++|+.++++ +|+++++|||||||++|++|++..+...
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g----------------- 417 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG----------------- 417 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT-----------------
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcC-----------------
Confidence 444555688999 8999999999999866 6999999999999999999999987643
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHHHhcCCCceEEe
Q psy3307 94 VFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVV 129 (130)
Q Consensus 94 ~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~~~~~ 129 (130)
.+++|++||++|+.|+++.++++...+++++..+
T Consensus 418 --~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l 451 (780)
T 1gm5_A 418 --FQTAFMVPTSILAIQHYRRTVESFSKFNIHVALL 451 (780)
T ss_dssp --SCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEEC
T ss_pred --CeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEE
Confidence 5799999999999999999999999888888765
No 44
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.66 E-value=4.5e-16 Score=128.99 Aligned_cols=82 Identities=21% Similarity=0.160 Sum_probs=71.8
Q ss_pred HCCCCCCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEcCcHHH
Q psy3307 28 LARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTREL 107 (130)
Q Consensus 28 ~~~~~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 107 (130)
..|| .||++|.++++.+++|+|++++||||||||++|+++++..+.. ++++||++||++|
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~-------------------~~~~Lil~PtreL 133 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK-------------------GKKSALVFPTVTL 133 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTT-------------------TCCEEEEESSHHH
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhc-------------------CCeEEEEechHHH
Confidence 3688 6999999999999999999999999999999988888876621 1679999999999
Q ss_pred HHHHHHHHHHHHhcCCCceEEeC
Q psy3307 108 ATQIYDEAKKFAYRSQLRPCVVL 130 (130)
Q Consensus 108 a~q~~~~~~~l~~~~~~~~~~~~ 130 (130)
+.|+++.+++++ ..++++..++
T Consensus 134 a~Q~~~~l~~l~-~~~i~v~~l~ 155 (1104)
T 4ddu_A 134 VKQTLERLQKLA-DEKVKIFGFY 155 (1104)
T ss_dssp HHHHHHHHHTTS-CTTSCEEEEC
T ss_pred HHHHHHHHHHhh-CCCCeEEEEe
Confidence 999999999987 7778877653
No 45
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.65 E-value=1.1e-15 Score=130.86 Aligned_cols=95 Identities=21% Similarity=0.300 Sum_probs=82.3
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHhHHhcC-CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCc
Q psy3307 18 MTEIITNNIALARYDKPTPVQKYAIPVIISG-RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFP 96 (130)
Q Consensus 18 l~~~i~~~l~~~~~~~~t~~Q~~~i~~~~~g-~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (130)
|.+...+++...+|+.++|+|.++++.++++ +|++++||||||||++|.+|+++.+.+... .
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~-----------------~ 973 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSE-----------------G 973 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTT-----------------C
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCC-----------------C
Confidence 5567788888889999999999999999754 689999999999999999999999876532 4
Q ss_pred eEEEEcCcHHHHHHHHHHHH-HHHhcCCCceEEe
Q psy3307 97 LGLVLAPTRELATQIYDEAK-KFAYRSQLRPCVV 129 (130)
Q Consensus 97 ~~lil~Pt~~La~q~~~~~~-~l~~~~~~~~~~~ 129 (130)
++||++|+|+||.|.++.++ ++++.+|+++..+
T Consensus 974 kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~l 1007 (1724)
T 4f92_B 974 RCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLL 1007 (1724)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEEC
T ss_pred EEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEE
Confidence 79999999999999999986 5777788887654
No 46
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.65 E-value=1.1e-15 Score=130.83 Aligned_cols=92 Identities=16% Similarity=0.183 Sum_probs=77.7
Q ss_pred CCCCCcHHHHHHHhHHh-cCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEcCcHHHH
Q psy3307 30 RYDKPTPVQKYAIPVII-SGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELA 108 (130)
Q Consensus 30 ~~~~~t~~Q~~~i~~~~-~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La 108 (130)
||+.++++|.++++.++ .++|++++||||||||+++.+++++.+.+....... ....+.++||++|+++|+
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~--------~~~~~~k~lyiaP~kALa 147 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGT--------INVDDFKIIYIAPMRSLV 147 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSS--------CCTTSCEEEEECSSHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhcccccc--------ccCCCCEEEEECCHHHHH
Confidence 79999999999999887 578999999999999999999999999875432111 122347899999999999
Q ss_pred HHHHHHHHHHHhcCCCceEEe
Q psy3307 109 TQIYDEAKKFAYRSQLRPCVV 129 (130)
Q Consensus 109 ~q~~~~~~~l~~~~~~~~~~~ 129 (130)
.|+++.+.+....+|++|..+
T Consensus 148 ~e~~~~l~~~~~~~gi~V~~~ 168 (1724)
T 4f92_B 148 QEMVGSFGKRLATYGITVAEL 168 (1724)
T ss_dssp HHHHHHHHHHHTTTTCCEEEC
T ss_pred HHHHHHHHHHHhhCCCEEEEE
Confidence 999999999888899888654
No 47
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.65 E-value=9.5e-16 Score=104.97 Aligned_cols=85 Identities=20% Similarity=0.194 Sum_probs=68.6
Q ss_pred CCCCCCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEcCcHHHH
Q psy3307 29 ARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELA 108 (130)
Q Consensus 29 ~~~~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La 108 (130)
.....|+++|.++++.+++|+++++.+|||+|||++|+++++..+...... ..+.++||++|+++|+
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~-------------~~~~~~lil~p~~~L~ 95 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKA-------------SEPGKVIVLVNKVLLV 95 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHT-------------TCCCCEEEEESSHHHH
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccc-------------cCCCcEEEEECHHHHH
Confidence 344589999999999999999999999999999999999999877653210 0125799999999999
Q ss_pred HH-HHHHHHHHHhcCCCceE
Q psy3307 109 TQ-IYDEAKKFAYRSQLRPC 127 (130)
Q Consensus 109 ~q-~~~~~~~l~~~~~~~~~ 127 (130)
.| +.+.++++... ++++.
T Consensus 96 ~q~~~~~~~~~~~~-~~~v~ 114 (216)
T 3b6e_A 96 EQLFRKEFQPFLKK-WYRVI 114 (216)
T ss_dssp HHHHHHTHHHHHTT-TSCEE
T ss_pred HHHHHHHHHHHhcc-CceEE
Confidence 99 78888888664 44443
No 48
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.64 E-value=1.6e-16 Score=131.74 Aligned_cols=92 Identities=24% Similarity=0.208 Sum_probs=81.0
Q ss_pred cCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCC
Q psy3307 10 KQGFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYP 89 (130)
Q Consensus 10 ~~~f~~l~l~~~i~~~l~~~~~~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~ 89 (130)
...|..+++++.+...+...+...|+++|.++|+.+.+|+|++++||||||||++|.+|++..+...
T Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g------------- 227 (1108)
T 3l9o_A 161 PPNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNK------------- 227 (1108)
T ss_dssp SSCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTT-------------
T ss_pred CCCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcC-------------
Confidence 4478888888888777767667789999999999999999999999999999999999999887432
Q ss_pred CCCCCCceEEEEcCcHHHHHHHHHHHHHHHh
Q psy3307 90 SRKKVFPLGLVLAPTRELATQIYDEAKKFAY 120 (130)
Q Consensus 90 ~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~ 120 (130)
.+++|++||++|+.|+++.++++..
T Consensus 228 ------~rvlvl~PtraLa~Q~~~~l~~~~~ 252 (1108)
T 3l9o_A 228 ------QRVIYTSPIKALSNQKYRELLAEFG 252 (1108)
T ss_dssp ------CEEEEEESSHHHHHHHHHHHHHHTS
T ss_pred ------CeEEEEcCcHHHHHHHHHHHHHHhC
Confidence 5799999999999999999988765
No 49
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.64 E-value=6.7e-16 Score=123.87 Aligned_cols=80 Identities=19% Similarity=0.052 Sum_probs=71.9
Q ss_pred CCCCCCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEcCcHHHH
Q psy3307 29 ARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELA 108 (130)
Q Consensus 29 ~~~~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La 108 (130)
+|. .|+++|..+++.++.|+ ++.++||||||++|++|++...... ++++|++||++||
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~g-------------------~~vlVltPTreLA 128 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALTG-------------------KGVHVVTVNDYLA 128 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTTS-------------------SCCEEEESSHHHH
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHcC-------------------CcEEEEcCCHHHH
Confidence 565 89999999999999998 8999999999999999998654321 4699999999999
Q ss_pred HHHHHHHHHHHhcCCCceEEeC
Q psy3307 109 TQIYDEAKKFAYRSQLRPCVVL 130 (130)
Q Consensus 109 ~q~~~~~~~l~~~~~~~~~~~~ 130 (130)
.|+++++..+.+.+|+++.+++
T Consensus 129 ~Q~~e~~~~l~~~lgl~v~~i~ 150 (853)
T 2fsf_A 129 QRDAENNRPLFEFLGLTVGINL 150 (853)
T ss_dssp HHHHHHHHHHHHHTTCCEEECC
T ss_pred HHHHHHHHHHHHhcCCeEEEEe
Confidence 9999999999999999998875
No 50
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.63 E-value=8.7e-16 Score=125.63 Aligned_cols=89 Identities=19% Similarity=0.115 Sum_probs=73.2
Q ss_pred HCCCCCCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEcCcHHH
Q psy3307 28 LARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTREL 107 (130)
Q Consensus 28 ~~~~~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 107 (130)
-.++..|+++|.++++.+++|+|+++.+|||+|||++|++|++..+..... ..+.++||++||++|
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~--------------~~~~~vLvl~Pt~~L 308 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA--------------GRKAKVVFLATKVPV 308 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCS--------------SCCCCEEEECSSHHH
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccc--------------cCCCeEEEEeCCHHH
Confidence 345779999999999999999999999999999999999999887654321 112679999999999
Q ss_pred HHHHHHHHHHHHhcCCCceEEeC
Q psy3307 108 ATQIYDEAKKFAYRSQLRPCVVL 130 (130)
Q Consensus 108 a~q~~~~~~~l~~~~~~~~~~~~ 130 (130)
+.|+.+.++++....++++..++
T Consensus 309 ~~Q~~~~~~~~~~~~~~~v~~~~ 331 (936)
T 4a2w_A 309 YEQQKNVFKHHFERQGYSVQGIS 331 (936)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEEC
T ss_pred HHHHHHHHHHHhcccCceEEEEE
Confidence 99999999999998888877653
No 51
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.60 E-value=3.1e-15 Score=120.48 Aligned_cols=81 Identities=20% Similarity=0.166 Sum_probs=72.8
Q ss_pred HCCCCCCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEcCcHHH
Q psy3307 28 LARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTREL 107 (130)
Q Consensus 28 ~~~~~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 107 (130)
.+|+ .|+++|..+++.++.|+ +++++||+|||++|.+|++...... ..++|++||++|
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~g-------------------~~v~VvTpTreL 164 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALAG-------------------NGVHIVTVNDYL 164 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTTT-------------------SCEEEEESSHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHhC-------------------CCeEEEeCCHHH
Confidence 4788 89999999999999998 9999999999999999997554321 359999999999
Q ss_pred HHHHHHHHHHHHhcCCCceEEeC
Q psy3307 108 ATQIYDEAKKFAYRSQLRPCVVL 130 (130)
Q Consensus 108 a~q~~~~~~~l~~~~~~~~~~~~ 130 (130)
|.|..+++..+.+.+|+++.+++
T Consensus 165 A~Qdae~m~~l~~~lGLsv~~i~ 187 (922)
T 1nkt_A 165 AKRDSEWMGRVHRFLGLQVGVIL 187 (922)
T ss_dssp HHHHHHHHHHHHHHTTCCEEECC
T ss_pred HHHHHHHHHHHHhhcCCeEEEEe
Confidence 99999999999999999998875
No 52
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.59 E-value=7.4e-15 Score=118.45 Aligned_cols=81 Identities=19% Similarity=0.063 Sum_probs=72.5
Q ss_pred HCCCCCCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEcCcHHH
Q psy3307 28 LARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTREL 107 (130)
Q Consensus 28 ~~~~~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 107 (130)
.+|+ .|+++|..+++.++.|+ +++++||+|||++|.+|++...... .+++|++||++|
T Consensus 75 ~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G-------------------~qv~VvTPTreL 132 (997)
T 2ipc_A 75 YLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALTG-------------------KGVHVVTVNDYL 132 (997)
T ss_dssp HTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTTC-------------------SCCEEEESSHHH
T ss_pred HhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHhC-------------------CCEEEEeCCHHH
Confidence 3798 89999999999999998 8999999999999999996544321 359999999999
Q ss_pred HHHHHHHHHHHHhcCCCceEEeC
Q psy3307 108 ATQIYDEAKKFAYRSQLRPCVVL 130 (130)
Q Consensus 108 a~q~~~~~~~l~~~~~~~~~~~~ 130 (130)
|.|.++++..+.+.+|+++.+++
T Consensus 133 A~Qdae~m~~l~~~lGLsv~~i~ 155 (997)
T 2ipc_A 133 ARRDAEWMGPVYRGLGLSVGVIQ 155 (997)
T ss_dssp HHHHHHHHHHHHHTTTCCEEECC
T ss_pred HHHHHHHHHHHHHhcCCeEEEEe
Confidence 99999999999999999998764
No 53
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.56 E-value=1.1e-14 Score=111.66 Aligned_cols=78 Identities=19% Similarity=0.108 Sum_probs=68.3
Q ss_pred CCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEcCcHHHHHHHH
Q psy3307 33 KPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIY 112 (130)
Q Consensus 33 ~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~q~~ 112 (130)
.|++.|.++++.+++++|+++++|||+|||++|+.++...+.... .++||++|+++|+.|+.
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~------------------~~vlvl~P~~~L~~Q~~ 174 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYE------------------GKILIIVPTTALTTQMA 174 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCS------------------SEEEEEESSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCC------------------CeEEEEECcHHHHHHHH
Confidence 799999999999999999999999999999999999888776432 47999999999999999
Q ss_pred HHHHHHHhcCCCceEE
Q psy3307 113 DEAKKFAYRSQLRPCV 128 (130)
Q Consensus 113 ~~~~~l~~~~~~~~~~ 128 (130)
+.++++....++++..
T Consensus 175 ~~~~~~~~~~~~~v~~ 190 (510)
T 2oca_A 175 DDFVDYRLFSHAMIKK 190 (510)
T ss_dssp HHHHHTTSSCGGGEEE
T ss_pred HHHHHhhcCCccceEE
Confidence 9999986665555544
No 54
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.56 E-value=1.4e-14 Score=103.70 Aligned_cols=78 Identities=19% Similarity=0.108 Sum_probs=66.1
Q ss_pred CCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEcCcHHHHHHHH
Q psy3307 33 KPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIY 112 (130)
Q Consensus 33 ~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~q~~ 112 (130)
.++++|.++++.++++++.++++|||+|||++++.++...+.... .++||++|+++|+.|+.
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~------------------~~~lil~Pt~~L~~q~~ 174 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYE------------------GKILIIVPTTALTTQMA 174 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCS------------------SEEEEECSSHHHHHHHH
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCC------------------CeEEEEECCHHHHHHHH
Confidence 799999999999998888999999999999999888777665332 47999999999999999
Q ss_pred HHHHHHHhcCCCceEE
Q psy3307 113 DEAKKFAYRSQLRPCV 128 (130)
Q Consensus 113 ~~~~~l~~~~~~~~~~ 128 (130)
+.++++....+..+..
T Consensus 175 ~~l~~~~~~~~~~~~~ 190 (282)
T 1rif_A 175 DDFVDYRLFSHAMIKK 190 (282)
T ss_dssp HHHHHHTSCCGGGEEE
T ss_pred HHHHHhcccccceEEE
Confidence 9999987655444443
No 55
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.55 E-value=2.8e-16 Score=123.74 Aligned_cols=82 Identities=22% Similarity=0.256 Sum_probs=65.9
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCC
Q psy3307 16 IQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVF 95 (130)
Q Consensus 16 l~l~~~i~~~l~~~~~~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (130)
+++++..++++... ...++|+|..+++.+++|+|++++||||||||++|++|+++.+....
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~------------------ 215 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRR------------------ 215 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTT------------------
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCC------------------
Confidence 56777776666554 36889998889999999999999999999999999999999987632
Q ss_pred ceEEEEcCcHHHHHHHHHHHH
Q psy3307 96 PLGLVLAPTRELATQIYDEAK 116 (130)
Q Consensus 96 ~~~lil~Pt~~La~q~~~~~~ 116 (130)
+++||++|||+||.|+.+.++
T Consensus 216 ~~vLvl~PtreLa~Qi~~~l~ 236 (618)
T 2whx_A 216 LRTLILAPTRVVAAEMEEALR 236 (618)
T ss_dssp CCEEEEESSHHHHHHHHHHTT
T ss_pred CeEEEEcChHHHHHHHHHHhc
Confidence 679999999999999998875
No 56
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.55 E-value=2.4e-14 Score=112.81 Aligned_cols=80 Identities=25% Similarity=0.198 Sum_probs=69.1
Q ss_pred CCcHHHHHHHhH----HhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEcCcHHHH
Q psy3307 33 KPTPVQKYAIPV----IISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELA 108 (130)
Q Consensus 33 ~~t~~Q~~~i~~----~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La 108 (130)
.|++.|.+.+.. +.+|++++++||||+|||++|++|++..+.... .+++|++||++++
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~------------------~kvli~t~T~~l~ 64 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERK------------------LKVLYLVRTNSQE 64 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHHT------------------CEEEEEESSHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhcC------------------CeEEEECCCHHHH
Confidence 578999888854 458999999999999999999999999987543 5799999999999
Q ss_pred HHHHHHHHHHHhcCCCceEEeC
Q psy3307 109 TQIYDEAKKFAYRSQLRPCVVL 130 (130)
Q Consensus 109 ~q~~~~~~~l~~~~~~~~~~~~ 130 (130)
.|+.+.++++.+..++++++++
T Consensus 65 ~Qi~~el~~l~~~~~~~~~~l~ 86 (620)
T 4a15_A 65 EQVIKELRSLSSTMKIRAIPMQ 86 (620)
T ss_dssp HHHHHHHHHHHHHSCCCEEECC
T ss_pred HHHHHHHHHHhhccCeEEEEEE
Confidence 9999999999998888887653
No 57
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.52 E-value=1.3e-14 Score=114.77 Aligned_cols=82 Identities=20% Similarity=0.217 Sum_probs=68.8
Q ss_pred CCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEcCcHHHHHHH-
Q psy3307 33 KPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQI- 111 (130)
Q Consensus 33 ~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~q~- 111 (130)
.|+++|.++++.+++|+|+++.+|||+|||++|++|++..+...... ..+.++||++|+++|+.|+
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~-------------~~~~~vlvl~P~~~L~~Q~~ 73 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKA-------------SEPGKVIVLVNKVLLVEQLF 73 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHH-------------TCCCCBCCEESCSHHHHHHH
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccc-------------CCCCeEEEEECCHHHHHHHH
Confidence 79999999999999999999999999999999999999987764210 0014699999999999999
Q ss_pred HHHHHHHHhcCCCceEE
Q psy3307 112 YDEAKKFAYRSQLRPCV 128 (130)
Q Consensus 112 ~~~~~~l~~~~~~~~~~ 128 (130)
.+.++++... ++++..
T Consensus 74 ~~~l~~~~~~-~~~v~~ 89 (699)
T 4gl2_A 74 RKEFQPFLKK-WYRVIG 89 (699)
T ss_dssp HHTHHHHHTT-TSCEEE
T ss_pred HHHHHHHcCc-CceEEE
Confidence 9999998875 345444
No 58
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.51 E-value=2.7e-14 Score=111.06 Aligned_cols=75 Identities=24% Similarity=0.150 Sum_probs=66.0
Q ss_pred CCcHHHHHHHhH----HhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEcCcHHHH
Q psy3307 33 KPTPVQKYAIPV----IISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELA 108 (130)
Q Consensus 33 ~~t~~Q~~~i~~----~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La 108 (130)
.++|.|.+++.. +.+|+|++++||||+|||++|++|++. .. ++++|++||++|+
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~----~~------------------~~v~i~~pt~~l~ 60 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE----VK------------------PKVLFVVRTHNEF 60 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH----HC------------------SEEEEEESSGGGH
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh----CC------------------CeEEEEcCCHHHH
Confidence 689999997764 458999999999999999999999997 11 6899999999999
Q ss_pred HHHHHHHHHHHhcCCCceEEe
Q psy3307 109 TQIYDEAKKFAYRSQLRPCVV 129 (130)
Q Consensus 109 ~q~~~~~~~l~~~~~~~~~~~ 129 (130)
.|+.+.++++.+..+++++++
T Consensus 61 ~q~~~~~~~l~~~~~~~~~~l 81 (551)
T 3crv_A 61 YPIYRDLTKIREKRNITFSFL 81 (551)
T ss_dssp HHHHHHHTTCCCSSCCCEEEC
T ss_pred HHHHHHHHHHhhhcCccEEEE
Confidence 999999999988888887765
No 59
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.51 E-value=3.7e-15 Score=113.37 Aligned_cols=68 Identities=24% Similarity=0.292 Sum_probs=60.3
Q ss_pred CCCCCcHHHHHHHhHHhcCCcE-EEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEcCcHHHH
Q psy3307 30 RYDKPTPVQKYAIPVIISGRDV-MACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELA 108 (130)
Q Consensus 30 ~~~~~t~~Q~~~i~~~~~g~~~-l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La 108 (130)
|+..++|+|. +||.+++|+|+ ++++|||||||++|++|++....... ++++|++||++|+
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~------------------~~~lvl~Ptr~La 61 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRR------------------LRTLILAPTRVVA 61 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTT------------------CCEEEEESSHHHH
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcC------------------CcEEEECCCHHHH
Confidence 6778999985 79999999888 99999999999999999998876533 5799999999999
Q ss_pred HHHHHHHH
Q psy3307 109 TQIYDEAK 116 (130)
Q Consensus 109 ~q~~~~~~ 116 (130)
.|+.+.+.
T Consensus 62 ~Q~~~~l~ 69 (451)
T 2jlq_A 62 AEMEEALR 69 (451)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhc
Confidence 99999885
No 60
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.51 E-value=1.8e-13 Score=114.04 Aligned_cols=95 Identities=23% Similarity=0.239 Sum_probs=78.2
Q ss_pred CCCCCHHHHHHH-HHCCCCCCcHHHHHHHhHHhc----CC--cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q psy3307 15 DIQMTEIITNNI-ALARYDKPTPVQKYAIPVIIS----GR--DVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRG 87 (130)
Q Consensus 15 ~l~l~~~i~~~l-~~~~~~~~t~~Q~~~i~~~~~----g~--~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~ 87 (130)
.++.+....+.+ ..++| .+||+|.++++.+++ |+ |+++++|||+|||++|+++++..+...
T Consensus 585 ~~~~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g----------- 652 (1151)
T 2eyq_A 585 AFKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH----------- 652 (1151)
T ss_dssp CCCCCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTT-----------
T ss_pred CCCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhC-----------
Confidence 455677777776 45687 579999999999986 66 999999999999999998888765321
Q ss_pred CCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhcCCCceEEe
Q psy3307 88 YPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVV 129 (130)
Q Consensus 88 ~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~~~~~ 129 (130)
.+++|++||++|+.|+++.+++.....++++..+
T Consensus 653 --------~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l 686 (1151)
T 2eyq_A 653 --------KQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMI 686 (1151)
T ss_dssp --------CEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEE
T ss_pred --------CeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEE
Confidence 5799999999999999999998877777776654
No 61
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.50 E-value=1.2e-13 Score=113.74 Aligned_cols=75 Identities=24% Similarity=0.259 Sum_probs=66.3
Q ss_pred HHHCCCCCCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEcCcH
Q psy3307 26 IALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTR 105 (130)
Q Consensus 26 l~~~~~~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~ 105 (130)
...++| .++++|.++++.+.+|+++++++|||||||++|.++++..+... .+++|++|++
T Consensus 80 ~~~~~f-~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~g-------------------~rvL~l~Ptk 139 (1010)
T 2xgj_A 80 ARTYPF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNK-------------------QRVIYTSPIK 139 (1010)
T ss_dssp SCCCSS-CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHTT-------------------CEEEEEESSH
T ss_pred HHhCCC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhccC-------------------CeEEEECChH
Confidence 345677 59999999999999999999999999999999999998877432 5799999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy3307 106 ELATQIYDEAKKFAY 120 (130)
Q Consensus 106 ~La~q~~~~~~~l~~ 120 (130)
+|+.|+++.++++..
T Consensus 140 aLa~Q~~~~l~~~~~ 154 (1010)
T 2xgj_A 140 ALSNQKYRELLAEFG 154 (1010)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999988765
No 62
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.48 E-value=6.4e-16 Score=122.68 Aligned_cols=76 Identities=18% Similarity=0.222 Sum_probs=63.3
Q ss_pred HHHHCCCC-----CCcHHHH-----HHHhHHh------cCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q psy3307 25 NIALARYD-----KPTPVQK-----YAIPVII------SGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGY 88 (130)
Q Consensus 25 ~l~~~~~~-----~~t~~Q~-----~~i~~~~------~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~ 88 (130)
++...||. .||++|. ++|+.++ +|+|+++++|||||||++|++|+++.+....
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~----------- 270 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKR----------- 270 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTT-----------
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCC-----------
Confidence 44555666 8999999 9999888 8999999999999999999999999876533
Q ss_pred CCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q psy3307 89 PSRKKVFPLGLVLAPTRELATQIYDEAKKF 118 (130)
Q Consensus 89 ~~~~~~~~~~lil~Pt~~La~q~~~~~~~l 118 (130)
++++|++||++||.|+++.++.+
T Consensus 271 -------~~~lilaPTr~La~Q~~~~l~~~ 293 (673)
T 2wv9_A 271 -------LRTAVLAPTRVVAAEMAEALRGL 293 (673)
T ss_dssp -------CCEEEEESSHHHHHHHHHHTTTS
T ss_pred -------CcEEEEccHHHHHHHHHHHHhcC
Confidence 67999999999999999988754
No 63
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.47 E-value=9.8e-14 Score=114.18 Aligned_cols=73 Identities=21% Similarity=0.190 Sum_probs=63.4
Q ss_pred HCCCCCCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEcCcHHH
Q psy3307 28 LARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTREL 107 (130)
Q Consensus 28 ~~~~~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 107 (130)
.++| .++++|.++|+.+++|+|+++.+|||||||++|.+++....... .+++|++|+++|
T Consensus 35 ~~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g-------------------~~vlvl~PtraL 94 (997)
T 4a4z_A 35 SWPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNM-------------------TKTIYTSPIKAL 94 (997)
T ss_dssp CCSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTT-------------------CEEEEEESCGGG
T ss_pred hCCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhcC-------------------CeEEEEeCCHHH
Confidence 3566 58999999999999999999999999999999999888765421 579999999999
Q ss_pred HHHHHHHHHHHHh
Q psy3307 108 ATQIYDEAKKFAY 120 (130)
Q Consensus 108 a~q~~~~~~~l~~ 120 (130)
+.|+++.++++..
T Consensus 95 a~Q~~~~l~~~~~ 107 (997)
T 4a4z_A 95 SNQKFRDFKETFD 107 (997)
T ss_dssp HHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHcC
Confidence 9999999987643
No 64
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.46 E-value=4.4e-13 Score=100.46 Aligned_cols=76 Identities=20% Similarity=0.186 Sum_probs=64.7
Q ss_pred CCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEcCcHHHHHHHH
Q psy3307 33 KPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIY 112 (130)
Q Consensus 33 ~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~q~~ 112 (130)
.|+|+|.++++.++++ ++++.+|||+|||++++++++..+.... .++||++|+++|+.|+.
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~------------------~~~liv~P~~~L~~q~~ 69 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYG------------------GKVLMLAPTKPLVLQHA 69 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHSC------------------SCEEEECSSHHHHHHHH
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcCC------------------CeEEEEECCHHHHHHHH
Confidence 6899999999999999 9999999999999999999988876322 57999999999999999
Q ss_pred HHHHHHHhcCCCceE
Q psy3307 113 DEAKKFAYRSQLRPC 127 (130)
Q Consensus 113 ~~~~~l~~~~~~~~~ 127 (130)
+.++++....+.++.
T Consensus 70 ~~~~~~~~~~~~~v~ 84 (494)
T 1wp9_A 70 ESFRRLFNLPPEKIV 84 (494)
T ss_dssp HHHHHHBCSCGGGEE
T ss_pred HHHHHHhCcchhheE
Confidence 999988643333443
No 65
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.44 E-value=7.3e-13 Score=100.61 Aligned_cols=64 Identities=25% Similarity=0.238 Sum_probs=58.0
Q ss_pred CCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEcCcHHHHHHHH
Q psy3307 33 KPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIY 112 (130)
Q Consensus 33 ~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~q~~ 112 (130)
.|+++|.++++.+++++++++++|||+|||++|+.++... . .++||++|+++|+.|+.
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~----~------------------~~~Lvl~P~~~L~~Q~~ 150 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----S------------------TPTLIVVPTLALAEQWK 150 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH----C------------------SCEEEEESSHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc----C------------------CCEEEEECCHHHHHHHH
Confidence 6899999999999999999999999999999998888753 1 46999999999999999
Q ss_pred HHHHHH
Q psy3307 113 DEAKKF 118 (130)
Q Consensus 113 ~~~~~l 118 (130)
+.++++
T Consensus 151 ~~~~~~ 156 (472)
T 2fwr_A 151 ERLGIF 156 (472)
T ss_dssp HHGGGG
T ss_pred HHHHhC
Confidence 998884
No 66
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.42 E-value=8e-13 Score=92.38 Aligned_cols=72 Identities=18% Similarity=0.112 Sum_probs=61.0
Q ss_pred CCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEcCcHHHHHHHH
Q psy3307 33 KPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIY 112 (130)
Q Consensus 33 ~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~q~~ 112 (130)
.++++|.++++.+.+|+++++.||||||||.++.++++........ ....+++++.|+++++.|+.
T Consensus 61 p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~--------------~~~~~~l~~~p~~~la~q~~ 126 (235)
T 3llm_A 61 PVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR--------------AAECNIVVTQPRRISAVSVA 126 (235)
T ss_dssp GGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC--------------GGGCEEEEEESSHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC--------------CCceEEEEeccchHHHHHHH
Confidence 5689999999999999999999999999999999999887765432 11258999999999999998
Q ss_pred HHHHHH
Q psy3307 113 DEAKKF 118 (130)
Q Consensus 113 ~~~~~l 118 (130)
+.+...
T Consensus 127 ~~~~~~ 132 (235)
T 3llm_A 127 ERVAFE 132 (235)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 877543
No 67
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.38 E-value=8.7e-13 Score=102.38 Aligned_cols=67 Identities=21% Similarity=0.216 Sum_probs=54.1
Q ss_pred CCCCCCcHHHHHHHhH----HhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEcCc
Q psy3307 29 ARYDKPTPVQKYAIPV----IISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPT 104 (130)
Q Consensus 29 ~~~~~~t~~Q~~~i~~----~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 104 (130)
.|| .++|.|.+++.. +.+|++++++||||+|||++|++|++.. . .+++|++||
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~----~------------------~~~~~~~~t 60 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL----K------------------KKVLIFTRT 60 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH----T------------------CEEEEEESC
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC----C------------------CcEEEEcCC
Confidence 466 799999998754 4588999999999999999999998753 1 579999999
Q ss_pred HHHHHHHHHHHHHH
Q psy3307 105 RELATQIYDEAKKF 118 (130)
Q Consensus 105 ~~La~q~~~~~~~l 118 (130)
++|+.|+.+.++++
T Consensus 61 ~~l~~q~~~~~~~l 74 (540)
T 2vl7_A 61 HSQLDSIYKNAKLL 74 (540)
T ss_dssp HHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999888764
No 68
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.36 E-value=5.9e-12 Score=88.36 Aligned_cols=64 Identities=25% Similarity=0.238 Sum_probs=56.4
Q ss_pred CCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEcCcHHHHHHHH
Q psy3307 33 KPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIY 112 (130)
Q Consensus 33 ~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~q~~ 112 (130)
.++++|.+++..+++++++++++|||+|||++++.++... . .+++|++|+++|+.|+.
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~----~------------------~~~liv~P~~~L~~q~~ 150 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----S------------------TPTLIVVPTLALAEQWK 150 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS----C------------------SCEEEEESSHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc----C------------------CCEEEEeCCHHHHHHHH
Confidence 7899999999999999999999999999999987776542 1 46999999999999999
Q ss_pred HHHHHH
Q psy3307 113 DEAKKF 118 (130)
Q Consensus 113 ~~~~~l 118 (130)
+.++++
T Consensus 151 ~~~~~~ 156 (237)
T 2fz4_A 151 ERLGIF 156 (237)
T ss_dssp HHHGGG
T ss_pred HHHHhC
Confidence 998874
No 69
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.33 E-value=4.3e-12 Score=102.15 Aligned_cols=93 Identities=18% Similarity=0.178 Sum_probs=73.4
Q ss_pred ccccCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHhHHh-cCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCC
Q psy3307 7 SLKKQGFDDIQMTEIITNNIALARYDKPTPVQKYAIPVII-SGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAG 85 (130)
Q Consensus 7 ~~~~~~f~~l~l~~~i~~~l~~~~~~~~t~~Q~~~i~~~~-~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~ 85 (130)
+.+...|+++++++.+.+.+++.+ ..|++.|..+|+.++ .|++++++||||||||+ ++|++........
T Consensus 68 ~~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~~------- 137 (773)
T 2xau_A 68 DGKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMPH------- 137 (773)
T ss_dssp HSSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCGG-------
T ss_pred cCCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhcccc-------
Confidence 345778999999999999999888 689999999998877 55789999999999999 5676633222110
Q ss_pred CCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q psy3307 86 RGYPSRKKVFPLGLVLAPTRELATQIYDEAK 116 (130)
Q Consensus 86 ~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~ 116 (130)
..+.++++++|+++|+.|+.+.+.
T Consensus 138 -------~~g~~ilvl~P~r~La~q~~~~l~ 161 (773)
T 2xau_A 138 -------LENTQVACTQPRRVAAMSVAQRVA 161 (773)
T ss_dssp -------GGTCEEEEEESCHHHHHHHHHHHH
T ss_pred -------CCCceEEecCchHHHHHHHHHHHH
Confidence 012579999999999999987653
No 70
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.32 E-value=6.9e-13 Score=100.64 Aligned_cols=57 Identities=30% Similarity=0.404 Sum_probs=50.5
Q ss_pred HHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q psy3307 44 VIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKF 118 (130)
Q Consensus 44 ~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l 118 (130)
.+++|+|+++++|||||||++|++|+++.+.... ++++|++||++||.|+++.++.+
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~------------------~~~lil~Ptr~La~Q~~~~l~~~ 60 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRR------------------LRTLVLAPTRVVLSEMKEAFHGL 60 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTT------------------CCEEEEESSHHHHHHHHHHTTTS
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcC------------------CeEEEEcchHHHHHHHHHHHhcC
Confidence 4678999999999999999999999999877543 67999999999999999988744
No 71
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.30 E-value=1.1e-12 Score=100.03 Aligned_cols=57 Identities=25% Similarity=0.310 Sum_probs=49.9
Q ss_pred HhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q psy3307 42 IPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAK 116 (130)
Q Consensus 42 i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~ 116 (130)
...+.+|+++++++|||||||++|++|+++.+.... +++||++|||+|+.|+.+.++
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~------------------~~~lvl~Ptr~La~Q~~~~l~ 71 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQR------------------LRTAVLAPTRVVAAEMAEALR 71 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTT------------------CCEEEEECSHHHHHHHHHHTT
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCC------------------CcEEEECchHHHHHHHHHHhc
Confidence 345667899999999999999999999999887533 579999999999999999886
No 72
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.23 E-value=7.7e-12 Score=94.61 Aligned_cols=52 Identities=23% Similarity=0.398 Sum_probs=45.4
Q ss_pred cCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAK 116 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~ 116 (130)
+|+|+++++|||||||++|++|+++.+.... .+++|++||++|+.|+++.++
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~g------------------~~~lvl~Pt~~La~Q~~~~~~ 52 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKR------------------LRTVILAPTRVVASEMYEALR 52 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHTT------------------CCEEEEESSHHHHHHHHHHTT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhCC------------------CCEEEECcHHHHHHHHHHHhC
Confidence 4789999999999999999999997776543 579999999999999998775
No 73
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.15 E-value=2.5e-11 Score=94.65 Aligned_cols=77 Identities=22% Similarity=0.203 Sum_probs=46.4
Q ss_pred CCcHHHHHHHhHHhc----C-CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEcCcHHH
Q psy3307 33 KPTPVQKYAIPVIIS----G-RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTREL 107 (130)
Q Consensus 33 ~~t~~Q~~~i~~~~~----g-~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 107 (130)
.++++|.++++.++. | ++++++++||||||+++ ++++..+....... .....+.++||++|+++|
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~-~~~~~~l~~~~~~~---------~~~~~~~~vlil~P~~~L 247 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVA-FQISWKLWSARWNR---------TGDYRKPRILFLADRNVL 247 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHH-HHHHHHHHHTTCCS---------SCSSSCCCEEEEEC----
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHH-HHHHHHHHhccccc---------ccccCCCeEEEEeCCHHH
Confidence 699999999998875 4 67899999999999996 44555554432100 001123689999999999
Q ss_pred HHHHH-HHHHHHH
Q psy3307 108 ATQIY-DEAKKFA 119 (130)
Q Consensus 108 a~q~~-~~~~~l~ 119 (130)
+.|+. +.++.++
T Consensus 248 ~~Q~~~~~~~~~~ 260 (590)
T 3h1t_A 248 VDDPKDKTFTPFG 260 (590)
T ss_dssp -------CCTTTC
T ss_pred HHHHHHHHHHhcc
Confidence 99999 7777654
No 74
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.08 E-value=1.7e-11 Score=97.13 Aligned_cols=63 Identities=24% Similarity=0.067 Sum_probs=50.6
Q ss_pred CcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEcCcHHHHHHHHH
Q psy3307 34 PTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIYD 113 (130)
Q Consensus 34 ~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~q~~~ 113 (130)
+.+.|..+++.+.+++|++++||||||||++|.+++++. . .+++|++|||+||.|+.+
T Consensus 218 ~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~----g------------------~~vLVl~PTReLA~Qia~ 275 (666)
T 3o8b_A 218 VFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ----G------------------YKVLVLNPSVAATLGFGA 275 (666)
T ss_dssp SCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT----T------------------CCEEEEESCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC----C------------------CeEEEEcchHHHHHHHHH
Confidence 345555556666688999999999999999999988751 1 479999999999999988
Q ss_pred HHHHH
Q psy3307 114 EAKKF 118 (130)
Q Consensus 114 ~~~~l 118 (130)
.+.+.
T Consensus 276 ~l~~~ 280 (666)
T 3o8b_A 276 YMSKA 280 (666)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 75
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.04 E-value=2e-10 Score=94.96 Aligned_cols=71 Identities=21% Similarity=0.125 Sum_probs=57.8
Q ss_pred CCcHHHHHHHhHHhc--------------CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceE
Q psy3307 33 KPTPVQKYAIPVIIS--------------GRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLG 98 (130)
Q Consensus 33 ~~t~~Q~~~i~~~~~--------------g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (130)
.|+++|..+++.++. +++.++.++||||||+++ ++++..+..... ..++
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~~----------------~~rv 333 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELDF----------------IDKV 333 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCTT----------------CCEE
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcCC----------------CceE
Confidence 599999999998875 378999999999999997 666654432111 1589
Q ss_pred EEEcCcHHHHHHHHHHHHHHHh
Q psy3307 99 LVLAPTRELATQIYDEAKKFAY 120 (130)
Q Consensus 99 lil~Pt~~La~q~~~~~~~l~~ 120 (130)
|||+|+++|+.|+.+.++.+..
T Consensus 334 Lvlvpr~eL~~Q~~~~f~~f~~ 355 (1038)
T 2w00_A 334 FFVVDRKDLDYQTMKEYQRFSP 355 (1038)
T ss_dssp EEEECGGGCCHHHHHHHHTTST
T ss_pred EEEeCcHHHHHHHHHHHHHhcc
Confidence 9999999999999999988764
No 76
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.04 E-value=5.5e-10 Score=88.84 Aligned_cols=53 Identities=19% Similarity=0.344 Sum_probs=43.3
Q ss_pred hHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q psy3307 43 PVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKF 118 (130)
Q Consensus 43 ~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l 118 (130)
...++|++++++||||||||+ +++..+.... +++|++|||+||.|+++.+++.
T Consensus 150 ar~l~rk~vlv~apTGSGKT~----~al~~l~~~~-------------------~gl~l~PtR~LA~Qi~~~l~~~ 202 (677)
T 3rc3_A 150 ARAMQRKIIFHSGPTNSGKTY----HAIQKYFSAK-------------------SGVYCGPLKLLAHEIFEKSNAA 202 (677)
T ss_dssp HHTSCCEEEEEECCTTSSHHH----HHHHHHHHSS-------------------SEEEEESSHHHHHHHHHHHHHT
T ss_pred HHhcCCCEEEEEcCCCCCHHH----HHHHHHHhcC-------------------CeEEEeCHHHHHHHHHHHHHhc
Confidence 455789999999999999998 4555555432 3699999999999999998875
No 77
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=98.95 E-value=5.8e-09 Score=83.32 Aligned_cols=81 Identities=22% Similarity=0.083 Sum_probs=70.6
Q ss_pred HCCCCCCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEcCcHHH
Q psy3307 28 LARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTREL 107 (130)
Q Consensus 28 ~~~~~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 107 (130)
.+|. .|+++|....-.+..|+ ++...||+|||+++.+|++-..... ..+.|++|++.|
T Consensus 71 ~lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~G-------------------~~vhVvT~ndyL 128 (822)
T 3jux_A 71 TLGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALIG-------------------KGVHLVTVNDYL 128 (822)
T ss_dssp HTSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTTS-------------------SCEEEEESSHHH
T ss_pred HhCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhcC-------------------CceEEEeccHHH
Confidence 3676 78999999998888887 8899999999999999997655432 359999999999
Q ss_pred HHHHHHHHHHHHhcCCCceEEeC
Q psy3307 108 ATQIYDEAKKFAYRSQLRPCVVL 130 (130)
Q Consensus 108 a~q~~~~~~~l~~~~~~~~~~~~ 130 (130)
|.|-..++..+.+.+|++|.+++
T Consensus 129 A~rdae~m~~l~~~Lglsvg~i~ 151 (822)
T 3jux_A 129 ARRDALWMGPVYLFLGLRVGVIN 151 (822)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHhHHHHHHHHHHHhCCEEEEEc
Confidence 99999999999999999998863
No 78
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=98.81 E-value=1.1e-08 Score=77.98 Aligned_cols=71 Identities=21% Similarity=0.280 Sum_probs=55.2
Q ss_pred CCcHHHHHHHhHH----hcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEcCcHHHH
Q psy3307 33 KPTPVQKYAIPVI----ISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELA 108 (130)
Q Consensus 33 ~~t~~Q~~~i~~~----~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La 108 (130)
.++|+|.+++..+ ..|++.++..+||+|||+..+ +++..+...... .++||++|+ +|+
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai-~~i~~~~~~~~~----------------~~~LIv~P~-~l~ 98 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTI-AVFSDAKKENEL----------------TPSLVICPL-SVL 98 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHH-HHHHHHHHTTCC----------------SSEEEEECS-TTH
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHH-HHHHHHHhcCCC----------------CCEEEEccH-HHH
Confidence 6899999999766 367899999999999999864 444444433211 469999995 699
Q ss_pred HHHHHHHHHHHhc
Q psy3307 109 TQIYDEAKKFAYR 121 (130)
Q Consensus 109 ~q~~~~~~~l~~~ 121 (130)
.|+.++++++...
T Consensus 99 ~qw~~e~~~~~~~ 111 (500)
T 1z63_A 99 KNWEEELSKFAPH 111 (500)
T ss_dssp HHHHHHHHHHCTT
T ss_pred HHHHHHHHHHCCC
Confidence 9999999988654
No 79
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.77 E-value=1.5e-08 Score=79.68 Aligned_cols=72 Identities=26% Similarity=0.190 Sum_probs=58.3
Q ss_pred cHHHHHHHhHHhcCCcEEEEccCCchHH--HHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEcCcHHHHHHHH
Q psy3307 35 TPVQKYAIPVIISGRDVMACAQTGSGKT--AAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIY 112 (130)
Q Consensus 35 t~~Q~~~i~~~~~g~~~l~~aptGsGKT--~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~q~~ 112 (130)
++.|..+++.++.++++++.|++||||| ++++++.+....... +.++++++||..+|.++.
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~-----------------~~~vll~APTg~AA~~L~ 213 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGE-----------------RCRIRLAAPTGKAAARLT 213 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSC-----------------CCCEEEEBSSHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcC-----------------CCeEEEEeCChhHHHHHH
Confidence 7899999999999999999999999999 566777766542111 157999999999999999
Q ss_pred HHHHHHHhcCC
Q psy3307 113 DEAKKFAYRSQ 123 (130)
Q Consensus 113 ~~~~~l~~~~~ 123 (130)
+.+......++
T Consensus 214 e~~~~~~~~l~ 224 (608)
T 1w36_D 214 ESLGKALRQLP 224 (608)
T ss_dssp HHHTHHHHHSS
T ss_pred HHHHHHHhcCC
Confidence 88877665544
No 80
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=98.69 E-value=5.4e-08 Score=80.13 Aligned_cols=68 Identities=19% Similarity=0.147 Sum_probs=54.9
Q ss_pred CCcHHHHHHHhHHhc--CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEcCcHHHHHH
Q psy3307 33 KPTPVQKYAIPVIIS--GRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQ 110 (130)
Q Consensus 33 ~~t~~Q~~~i~~~~~--g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~q 110 (130)
.++|+|.+++..++. +.+++++++||+|||+.++..+...+..... .++|||||+ +|+.|
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~-----------------~rvLIVvP~-sLl~Q 214 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAA-----------------ERVLIIVPE-TLQHQ 214 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSC-----------------CCEEEECCT-TTHHH
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCC-----------------CeEEEEeCH-HHHHH
Confidence 789999999988875 4589999999999999987766665543321 369999999 99999
Q ss_pred HHHHHHHH
Q psy3307 111 IYDEAKKF 118 (130)
Q Consensus 111 ~~~~~~~l 118 (130)
..+.+.+.
T Consensus 215 w~~E~~~~ 222 (968)
T 3dmq_A 215 WLVEMLRR 222 (968)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888543
No 81
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=98.41 E-value=2.2e-06 Score=67.76 Aligned_cols=76 Identities=18% Similarity=0.250 Sum_probs=55.2
Q ss_pred CCcHHHHHHHhHHh---------cCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEcC
Q psy3307 33 KPTPVQKYAIPVII---------SGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAP 103 (130)
Q Consensus 33 ~~t~~Q~~~i~~~~---------~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 103 (130)
.+.|+|.+++..+. .+...++..++|+|||+..+..+...+...... .....++||++|
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~------------~p~~~~~LiV~P 122 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDC------------KPEIDKVIVVSP 122 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTS------------SCSCSCEEEEEC
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccc------------cCCCCcEEEEec
Confidence 68999999998763 456889999999999998755554443322110 001135899999
Q ss_pred cHHHHHHHHHHHHHHHhc
Q psy3307 104 TRELATQIYDEAKKFAYR 121 (130)
Q Consensus 104 t~~La~q~~~~~~~l~~~ 121 (130)
+ +|+.|..++++++...
T Consensus 123 ~-sll~qW~~E~~~~~~~ 139 (644)
T 1z3i_X 123 S-SLVRNWYNEVGKWLGG 139 (644)
T ss_dssp H-HHHHHHHHHHHHHHGG
T ss_pred H-HHHHHHHHHHHHHcCC
Confidence 7 8999999999988654
No 82
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=98.36 E-value=8.1e-07 Score=71.81 Aligned_cols=72 Identities=18% Similarity=0.179 Sum_probs=55.3
Q ss_pred CCcHHHHHHHhHHh----cCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEcCcHHHH
Q psy3307 33 KPTPVQKYAIPVII----SGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELA 108 (130)
Q Consensus 33 ~~t~~Q~~~i~~~~----~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La 108 (130)
.++|+|.+++..+. .+++.++..++|.|||+..+..+...+...... ..+||||| .+++
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~----------------~~~LIV~P-~sll 298 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQN----------------GPHIIVVP-LSTM 298 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCC----------------SCEEEECC-TTTH
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCC----------------CCEEEEEC-chHH
Confidence 68899999997655 889999999999999998655544433332211 35899999 6889
Q ss_pred HHHHHHHHHHHhc
Q psy3307 109 TQIYDEAKKFAYR 121 (130)
Q Consensus 109 ~q~~~~~~~l~~~ 121 (130)
.|..++++++...
T Consensus 299 ~qW~~E~~~~~p~ 311 (800)
T 3mwy_W 299 PAWLDTFEKWAPD 311 (800)
T ss_dssp HHHHHHHHHHSTT
T ss_pred HHHHHHHHHHCCC
Confidence 9999999888644
No 83
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.19 E-value=7.7e-06 Score=64.66 Aligned_cols=67 Identities=21% Similarity=0.254 Sum_probs=52.0
Q ss_pred CCcHHHHHHHhHHhcCCc-EEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEcCcHHHHHHH
Q psy3307 33 KPTPVQKYAIPVIISGRD-VMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQI 111 (130)
Q Consensus 33 ~~t~~Q~~~i~~~~~g~~-~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~q~ 111 (130)
.+++-|.+|+..++..++ .+++||+|||||.+.. .++..+.... .++|+.+||..-++++
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~-~~I~~l~~~~------------------~~ILv~a~TN~AvD~i 249 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVV-EIILQAVKQG------------------LKVLCCAPSNIAVDNL 249 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHH-HHHHHHHHTT------------------CCEEEEESSHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHH-HHHHHHHhCC------------------CeEEEEcCchHHHHHH
Confidence 578999999999887764 6899999999998754 3444444332 4699999999999998
Q ss_pred HHHHHHH
Q psy3307 112 YDEAKKF 118 (130)
Q Consensus 112 ~~~~~~l 118 (130)
...+...
T Consensus 250 ~erL~~~ 256 (646)
T 4b3f_X 250 VERLALC 256 (646)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 8777543
No 84
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.08 E-value=1.5e-05 Score=62.87 Aligned_cols=69 Identities=20% Similarity=0.254 Sum_probs=54.0
Q ss_pred CCCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEcCcHHHHHHH
Q psy3307 32 DKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQI 111 (130)
Q Consensus 32 ~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~q~ 111 (130)
..+++.|..++..++.+.-.++.||+|||||... ..++..+.... +.++++++||...+.++
T Consensus 179 ~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~-~~~i~~l~~~~-----------------~~~ilv~a~tn~A~~~l 240 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLARQG-----------------NGPVLVCAPSNIAVDQL 240 (624)
T ss_dssp CCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHH-HHHHHHHHTSS-----------------SCCEEEEESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHH-HHHHHHHHHcC-----------------CCeEEEEeCcHHHHHHH
Confidence 4679999999999888888999999999999864 34444444321 14699999999999999
Q ss_pred HHHHHHH
Q psy3307 112 YDEAKKF 118 (130)
Q Consensus 112 ~~~~~~l 118 (130)
...+.+.
T Consensus 241 ~~~l~~~ 247 (624)
T 2gk6_A 241 TEKIHQT 247 (624)
T ss_dssp HHHHHTT
T ss_pred HHHHHhc
Confidence 8877654
No 85
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.07 E-value=2.1e-05 Score=63.76 Aligned_cols=69 Identities=16% Similarity=0.191 Sum_probs=54.1
Q ss_pred CCCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEcCcHHHHHHH
Q psy3307 32 DKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQI 111 (130)
Q Consensus 32 ~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~q~ 111 (130)
..+++.|.+|+..++.+.-.++.||+|||||... ..++..+..... .++++++||...+.++
T Consensus 359 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i-~~~i~~l~~~~~-----------------~~ILv~a~tn~A~d~l 420 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTS-ATIVYHLSKIHK-----------------DRILVCAPSNVAVDHL 420 (802)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHH-HHHHHHHHHHHC-----------------CCEEEEESSHHHHHHH
T ss_pred ccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHH-HHHHHHHHhCCC-----------------CeEEEEcCcHHHHHHH
Confidence 4578999999999988888899999999999764 334444433111 4699999999999999
Q ss_pred HHHHHHH
Q psy3307 112 YDEAKKF 118 (130)
Q Consensus 112 ~~~~~~l 118 (130)
.+.+.+.
T Consensus 421 ~~rL~~~ 427 (802)
T 2xzl_A 421 AAKLRDL 427 (802)
T ss_dssp HHHHHHT
T ss_pred HHHHHhh
Confidence 9888764
No 86
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.92 E-value=7.6e-05 Score=58.51 Aligned_cols=71 Identities=18% Similarity=0.143 Sum_probs=52.7
Q ss_pred CCCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEcCcHHHHHHH
Q psy3307 32 DKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQI 111 (130)
Q Consensus 32 ~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~q~ 111 (130)
..+++-|.+++.. .+..+++.|+.|||||.+.+-=+...+..... ..-+++++++|+..+.++
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~---------------~~~~iL~ltft~~aa~e~ 70 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENC---------------SPYSIMAVTFTNKAAAEM 70 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCC---------------CGGGEEEEESSHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCC---------------ChhhEEEEeccHHHHHHH
Confidence 4689999999963 35689999999999998754444333332211 114699999999999999
Q ss_pred HHHHHHHH
Q psy3307 112 YDEAKKFA 119 (130)
Q Consensus 112 ~~~~~~l~ 119 (130)
.+.+.++.
T Consensus 71 ~~rl~~~~ 78 (647)
T 3lfu_A 71 RHRIGQLM 78 (647)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99988764
No 87
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.92 E-value=4.4e-05 Score=61.88 Aligned_cols=69 Identities=20% Similarity=0.254 Sum_probs=53.9
Q ss_pred CCCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEcCcHHHHHHH
Q psy3307 32 DKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQI 111 (130)
Q Consensus 32 ~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~q~ 111 (130)
..+++.|.+++..++.+.-.++.||+|||||... ..++..+.... +.++++++||...+.++
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti-~~~i~~l~~~~-----------------~~~ilv~a~tn~A~~~l 416 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLARQG-----------------NGPVLVCAPSNIAVDQL 416 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHH-HHHHHHHHTTC-----------------SSCEEEEESSHHHHHHH
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHH-HHHHHHHHHcC-----------------CCcEEEEcCcHHHHHHH
Confidence 3578999999999988888999999999999864 34444444321 14699999999999999
Q ss_pred HHHHHHH
Q psy3307 112 YDEAKKF 118 (130)
Q Consensus 112 ~~~~~~l 118 (130)
.+.+.+.
T Consensus 417 ~~~l~~~ 423 (800)
T 2wjy_A 417 TEKIHQT 423 (800)
T ss_dssp HHHHHTT
T ss_pred HHHHHHh
Confidence 8877653
No 88
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.78 E-value=0.00012 Score=55.55 Aligned_cols=71 Identities=20% Similarity=0.244 Sum_probs=51.4
Q ss_pred HHCCCCCCcHHHHHHHhHHhcC-----CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEE
Q psy3307 27 ALARYDKPTPVQKYAIPVIISG-----RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVL 101 (130)
Q Consensus 27 ~~~~~~~~t~~Q~~~i~~~~~g-----~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil 101 (130)
.-..|..+++-|.+++..++.. ..+++.|+.|||||... ..++..+..... ..++++
T Consensus 19 ~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~~~-----------------~~il~~ 80 (459)
T 3upu_A 19 SHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALISTGE-----------------TGIILA 80 (459)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHTTC-----------------CCEEEE
T ss_pred CCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhcCC-----------------ceEEEe
Confidence 4467788999999999877532 39999999999999643 455555544331 258999
Q ss_pred cCcHHHHHHHHHHH
Q psy3307 102 APTRELATQIYDEA 115 (130)
Q Consensus 102 ~Pt~~La~q~~~~~ 115 (130)
+||...+..+...+
T Consensus 81 a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 81 APTHAAKKILSKLS 94 (459)
T ss_dssp ESSHHHHHHHHHHH
T ss_pred cCcHHHHHHHHhhh
Confidence 99998888776543
No 89
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.76 E-value=0.00014 Score=56.98 Aligned_cols=63 Identities=17% Similarity=0.131 Sum_probs=49.8
Q ss_pred CCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEcCcHHHHHHHH
Q psy3307 33 KPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIY 112 (130)
Q Consensus 33 ~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~q~~ 112 (130)
.+++.|..++..++.++.+++.|++|||||... ..++..+.... .++++++||...+..+.
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~~g------------------~~Vl~~ApT~~Aa~~L~ 249 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAESLG------------------LEVGLCAPTGKAARRLG 249 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHHTT------------------CCEEEEESSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHhcC------------------CeEEEecCcHHHHHHhH
Confidence 579999999999999999999999999999753 34444443322 46899999999998876
Q ss_pred HH
Q psy3307 113 DE 114 (130)
Q Consensus 113 ~~ 114 (130)
+.
T Consensus 250 e~ 251 (574)
T 3e1s_A 250 EV 251 (574)
T ss_dssp HH
T ss_pred hh
Confidence 53
No 90
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=97.67 E-value=9.8e-05 Score=58.68 Aligned_cols=68 Identities=31% Similarity=0.405 Sum_probs=51.7
Q ss_pred CCCCCcHHHHHHHhHHh----cCC-cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEcCc
Q psy3307 30 RYDKPTPVQKYAIPVII----SGR-DVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPT 104 (130)
Q Consensus 30 ~~~~~t~~Q~~~i~~~~----~g~-~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 104 (130)
+| .|++.|..++..+. .|. ..++.+.||||||+.+. .++... . ..+|||+|+
T Consensus 6 ~~-~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a-~~~~~~---~------------------~~~lvv~~~ 62 (664)
T 1c4o_A 6 GP-SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMA-KVIEAL---G------------------RPALVLAPN 62 (664)
T ss_dssp SC-CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHH-HHHHHH---T------------------CCEEEEESS
T ss_pred CC-CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHH-HHHHHh---C------------------CCEEEEecC
Confidence 55 89999999987665 333 56788999999998653 233332 1 238999999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy3307 105 RELATQIYDEAKKFAY 120 (130)
Q Consensus 105 ~~La~q~~~~~~~l~~ 120 (130)
..+|.|+++.++.+..
T Consensus 63 ~~~A~ql~~el~~~~~ 78 (664)
T 1c4o_A 63 KILAAQLAAEFRELFP 78 (664)
T ss_dssp HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHCC
Confidence 9999999999999853
No 91
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=97.62 E-value=0.00025 Score=56.20 Aligned_cols=71 Identities=18% Similarity=0.111 Sum_probs=52.8
Q ss_pred CCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEcCcHHHHHHHH
Q psy3307 33 KPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIY 112 (130)
Q Consensus 33 ~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~q~~ 112 (130)
.+++-|.+++.. .+..+++.|+.|||||.+..-=+...+...... ..++++++.|+..+.++.
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~---------------~~~IL~lTfT~~Aa~em~ 64 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQ---------------ARHIAAVTFTNKAAREMK 64 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCC---------------GGGEEEEESSHHHHHHHH
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCC---------------HHHeEEEeccHHHHHHHH
Confidence 478999998864 367899999999999987644444444432211 146999999999999999
Q ss_pred HHHHHHHh
Q psy3307 113 DEAKKFAY 120 (130)
Q Consensus 113 ~~~~~l~~ 120 (130)
+.+.+...
T Consensus 65 ~Rl~~~l~ 72 (673)
T 1uaa_A 65 ERVGQTLG 72 (673)
T ss_dssp HHHHHHSC
T ss_pred HHHHHHcC
Confidence 99877643
No 92
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=97.48 E-value=0.00071 Score=54.19 Aligned_cols=71 Identities=20% Similarity=0.142 Sum_probs=52.4
Q ss_pred CCCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEcCcHHHHHHH
Q psy3307 32 DKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQI 111 (130)
Q Consensus 32 ~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~q~ 111 (130)
..+++-|.+++.. .+..+++.|+.|||||.+..-=+...+..... ...++|+++.|+..|.++
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~---------------~p~~IL~vTFTnkAA~Em 72 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHV---------------APWNILAITFTNKAAREM 72 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCC---------------CGGGEEEEESSHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCC---------------CHHHeEEEeccHHHHHHH
Confidence 4689999998865 35689999999999998754444443432211 114699999999999999
Q ss_pred HHHHHHHH
Q psy3307 112 YDEAKKFA 119 (130)
Q Consensus 112 ~~~~~~l~ 119 (130)
.+.+.++.
T Consensus 73 ~~Rl~~~l 80 (724)
T 1pjr_A 73 RERVQSLL 80 (724)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 98887764
No 93
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=97.46 E-value=0.00035 Score=59.01 Aligned_cols=70 Identities=24% Similarity=0.229 Sum_probs=52.4
Q ss_pred CCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEcCcHHHHHHHH
Q psy3307 33 KPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIY 112 (130)
Q Consensus 33 ~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~q~~ 112 (130)
.+|+-|.++|..- +.++++.|..|||||.+.+-=++..+..... ....-++++++.|+..+..+.
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~-------------~~~~~~il~~Tft~~aa~e~~ 74 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEEN-------------PIDVDRLLVVTFTNASAAEMK 74 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSS-------------CCCGGGEEEECSSHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCC-------------CCCccceEEEeccHHHHHHHH
Confidence 5799999998643 8899999999999998765445554443211 011146999999999999998
Q ss_pred HHHHH
Q psy3307 113 DEAKK 117 (130)
Q Consensus 113 ~~~~~ 117 (130)
+.+..
T Consensus 75 ~ri~~ 79 (1232)
T 3u4q_A 75 HRIAE 79 (1232)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88765
No 94
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.21 E-value=0.003 Score=49.45 Aligned_cols=74 Identities=14% Similarity=0.069 Sum_probs=57.9
Q ss_pred CCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEcCcHHHHHHHH
Q psy3307 33 KPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIY 112 (130)
Q Consensus 33 ~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~q~~ 112 (130)
.++|.|...+..+...+.+++..+.++|||.....-++-.+.... +..++++.++++.|..+.
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~-----------------~~~i~~va~t~~qA~~~~ 225 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-----------------DKAVGILAHKGSMSAEVL 225 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSS-----------------SCEEEEEESSHHHHHHHH
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCC-----------------CCeEEEEECCHHHHHHHH
Confidence 579999999987766788999999999999876544444443221 146999999999999999
Q ss_pred HHHHHHHhcCC
Q psy3307 113 DEAKKFAYRSQ 123 (130)
Q Consensus 113 ~~~~~l~~~~~ 123 (130)
+.++.+.+..+
T Consensus 226 ~~i~~~i~~~p 236 (592)
T 3cpe_A 226 DRTKQAIELLP 236 (592)
T ss_dssp HHHHHHHTTSC
T ss_pred HHHHHHHHhCh
Confidence 98988877654
No 95
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.13 E-value=0.0041 Score=46.45 Aligned_cols=74 Identities=14% Similarity=0.069 Sum_probs=57.0
Q ss_pred CCcHHHHHHHhHHhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEcCcHHHHHHHH
Q psy3307 33 KPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIY 112 (130)
Q Consensus 33 ~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~q~~ 112 (130)
.++|.|...+..+...+.+++..+-+.|||.....-++..+.... +..+++++|+++.|..+.
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~-----------------g~~v~~vA~t~~qA~~vf 225 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-----------------DKAVGILAHKGSMSAEVL 225 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSS-----------------SCEEEEEESSHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCC-----------------CCeEEEEeCCHHHHHHHH
Confidence 689999999987666677899999999999876555544333211 146999999999999999
Q ss_pred HHHHHHHhcCC
Q psy3307 113 DEAKKFAYRSQ 123 (130)
Q Consensus 113 ~~~~~l~~~~~ 123 (130)
+.++.+.+..+
T Consensus 226 ~~i~~mi~~~P 236 (385)
T 2o0j_A 226 DRTKQAIELLP 236 (385)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHhCh
Confidence 88888776543
No 96
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=96.91 E-value=0.0025 Score=50.63 Aligned_cols=66 Identities=30% Similarity=0.433 Sum_probs=49.6
Q ss_pred CCcHHHHHHHhHHh----cCC-cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEcCcHHH
Q psy3307 33 KPTPVQKYAIPVII----SGR-DVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTREL 107 (130)
Q Consensus 33 ~~t~~Q~~~i~~~~----~g~-~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 107 (130)
.|+..|..++..+. .|. ...+.+.||||||+... .++... . ..+|||+|+..+
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a-~~~~~~---~------------------~~~lvv~~~~~~ 69 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVS-NLIKEV---N------------------KPTLVIAHNKTL 69 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHH-HHHHHH---C------------------CCEEEECSSHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHH-HHHHHh---C------------------CCEEEEECCHHH
Confidence 78999998887654 343 46788999999997542 233322 1 138999999999
Q ss_pred HHHHHHHHHHHHh
Q psy3307 108 ATQIYDEAKKFAY 120 (130)
Q Consensus 108 a~q~~~~~~~l~~ 120 (130)
|.|+++.++.+..
T Consensus 70 A~~l~~el~~~~~ 82 (661)
T 2d7d_A 70 AGQLYSEFKEFFP 82 (661)
T ss_dssp HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHcC
Confidence 9999999999853
No 97
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.32 E-value=0.0018 Score=49.06 Aligned_cols=56 Identities=13% Similarity=0.201 Sum_probs=38.4
Q ss_pred cccccCCCcCCCCCHHHHHHHHHC---CCCCCcHHHHHHHhHHhcCCcEEEEccCCchHHHH
Q psy3307 6 VSLKKQGFDDIQMTEIITNNIALA---RYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 6 ~~~~~~~f~~l~l~~~i~~~l~~~---~~~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~ 64 (130)
...|..+|+|.+--+...+.|.+. .+..|.-++...+ .-.+.+++.||+|+|||+.
T Consensus 173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~---~~prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI---RAPKGALMYGPPGTGKTLL 231 (434)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC---CCCCEEEEESCTTSSHHHH
T ss_pred CCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeeEEECcCCCCHHHH
Confidence 456888999999888888888652 1223333322211 1247899999999999975
No 98
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.29 E-value=0.0013 Score=47.13 Aligned_cols=62 Identities=19% Similarity=0.262 Sum_probs=40.6
Q ss_pred CcccccccccCCCcCCCCCHHHHHHHHHCCCCCCcHHHH-HHHh--HHhcCCcEEEEccCCchHHHHH
Q psy3307 1 MQECLVSLKKQGFDDIQMTEIITNNIALARYDKPTPVQK-YAIP--VIISGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 1 ~~~~~~~~~~~~f~~l~l~~~i~~~l~~~~~~~~t~~Q~-~~i~--~~~~g~~~l~~aptGsGKT~~~ 65 (130)
+.|.+...|..+|+++.-.+...+.+.+.-. .+... +.+. .+..++.+++.||+|+|||...
T Consensus 2 ~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~---~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 2 LRETVVEVPQVTWEDIGGLEDVKRELQELVQ---YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCCCEECCCCCGGGSCSCHHHHHHHHHHHH---HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CccccccCCCCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 3567778888999999888888777765310 11110 0011 1234678999999999999753
No 99
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.25 E-value=0.016 Score=37.86 Aligned_cols=18 Identities=28% Similarity=0.468 Sum_probs=16.2
Q ss_pred cCCcEEEEccCCchHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~ 64 (130)
.|+.+++.+|+|+|||..
T Consensus 37 ~g~~~~l~G~~G~GKTtL 54 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHL 54 (180)
T ss_dssp GCCEEEECCSSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 578999999999999974
No 100
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.09 E-value=0.0029 Score=47.54 Aligned_cols=58 Identities=16% Similarity=0.191 Sum_probs=37.9
Q ss_pred ccccccCCCcCCCCCHHHHHHHHHCC---CCCCcHHHHHHHhHHhcCCcEEEEccCCchHHHHH
Q psy3307 5 LVSLKKQGFDDIQMTEIITNNIALAR---YDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 5 ~~~~~~~~f~~l~l~~~i~~~l~~~~---~~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~ 65 (130)
....|..+|+|.+=-+...+.|++.= +..|.-++... +.-.+.+++.||+|+|||+..
T Consensus 139 ~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~g---i~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 139 VEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLG---IAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp EECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCCCEEEESCSSSSHHHHH
T ss_pred ccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCceEEeCCCCCCHHHHH
Confidence 44567899999997788877776531 11222222211 112478999999999999753
No 101
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.46 E-value=0.0055 Score=43.01 Aligned_cols=57 Identities=18% Similarity=0.161 Sum_probs=36.5
Q ss_pred cccccCCCcCCCCCHHHHHHHHHCCCCCCcHHH-HHHHhH--HhcCCcEEEEccCCchHHHHH
Q psy3307 6 VSLKKQGFDDIQMTEIITNNIALARYDKPTPVQ-KYAIPV--IISGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 6 ~~~~~~~f~~l~l~~~i~~~l~~~~~~~~t~~Q-~~~i~~--~~~g~~~l~~aptGsGKT~~~ 65 (130)
...+..+|+++.-.+...+.+.+.=. .+.+ ...+.. +..++.+++.||+|+|||...
T Consensus 9 ~~~~~~~~~~i~G~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 9 DERPNVRYEDIGGLEKQMQEIREVVE---LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp ESSCCCCGGGSCSCHHHHHHHHHHTH---HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred cCCCCCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 34566789999888888888765311 1111 111111 235678999999999999743
No 102
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.36 E-value=0.017 Score=36.61 Aligned_cols=20 Identities=15% Similarity=0.094 Sum_probs=17.1
Q ss_pred HhcCCcEEEEccCCchHHHH
Q psy3307 45 IISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 45 ~~~g~~~l~~aptGsGKT~~ 64 (130)
...+.++++.+|+|+|||..
T Consensus 24 ~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHH
T ss_pred hCCCCcEEEECCCCccHHHH
Confidence 34678999999999999974
No 103
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.32 E-value=0.0064 Score=46.47 Aligned_cols=56 Identities=13% Similarity=0.150 Sum_probs=37.3
Q ss_pred ccccCCCcCCCCCHHHHHHHHHCC---CCCCcHHHHHHHhHHhcCCcEEEEccCCchHHHHH
Q psy3307 7 SLKKQGFDDIQMTEIITNNIALAR---YDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 7 ~~~~~~f~~l~l~~~i~~~l~~~~---~~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~ 65 (130)
..|..+|+|.+--+++.+.|++.= +..|--++..- +.--+.+++.||+|+|||+..
T Consensus 202 e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 202 EKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp SSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHHH
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHHH
Confidence 467899999998888888887631 11221111111 123479999999999999743
No 104
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.19 E-value=0.0054 Score=46.54 Aligned_cols=58 Identities=19% Similarity=0.194 Sum_probs=37.2
Q ss_pred ccccccCCCcCCCCCHHHHHHHHHC---CCCCCcHHHHHHHhHHhcCCcEEEEccCCchHHHHH
Q psy3307 5 LVSLKKQGFDDIQMTEIITNNIALA---RYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 5 ~~~~~~~~f~~l~l~~~i~~~l~~~---~~~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~ 65 (130)
....|..+|+|.+--++..+.+.+. .+..|.-++... +.--+.+++.||+|+|||+..
T Consensus 172 ~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 172 SFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp EEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTSSHHHHH
T ss_pred eccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCCCcHHHHH
Confidence 4457888999999777777777652 111222111111 112379999999999999753
No 105
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.17 E-value=0.0095 Score=45.14 Aligned_cols=57 Identities=19% Similarity=0.229 Sum_probs=37.4
Q ss_pred cccccCCCcCCCCCHHHHHHHHHC---CCCCCcHHHHHHHhHHhcCCcEEEEccCCchHHHHH
Q psy3307 6 VSLKKQGFDDIQMTEIITNNIALA---RYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 6 ~~~~~~~f~~l~l~~~i~~~l~~~---~~~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~ 65 (130)
...|..+|+|.+=-++..+.|++. .+..|.-++..-+ --.+.+++.+|+|+|||+..
T Consensus 174 ~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 174 DKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp ESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHHH
T ss_pred ccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHHH
Confidence 456788999999777777777652 2223333322211 12478999999999999753
No 106
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.11 E-value=0.023 Score=36.04 Aligned_cols=20 Identities=15% Similarity=0.217 Sum_probs=17.1
Q ss_pred hcCCcEEEEccCCchHHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~~ 65 (130)
..+.++++.+|+|+|||...
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 46789999999999999753
No 107
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.10 E-value=0.039 Score=39.83 Aligned_cols=54 Identities=17% Similarity=0.238 Sum_probs=35.8
Q ss_pred cccccCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHhHHh-----cCCcEEEEccCCchHHHHH
Q psy3307 6 VSLKKQGFDDIQMTEIITNNIALARYDKPTPVQKYAIPVII-----SGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 6 ~~~~~~~f~~l~l~~~i~~~l~~~~~~~~t~~Q~~~i~~~~-----~g~~~l~~aptGsGKT~~~ 65 (130)
...|..+|+|++-.+...+.+.+.= -.|... +.++ ..+.+++.||+|+|||...
T Consensus 4 ~~~~~~~~~di~G~~~~k~~l~~~v---~~p~~~---~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 4 IERPNVKWSDVAGLEGAKEALKEAV---ILPIKF---PHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHH---HHHHHC---GGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred ecCCCCCHHHhcCHHHHHHHHHHHH---HHHHhC---HHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 4567789999998888887776521 011111 2222 2368999999999999743
No 108
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.01 E-value=0.024 Score=43.06 Aligned_cols=45 Identities=29% Similarity=0.397 Sum_probs=32.8
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy3307 49 RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKK 117 (130)
Q Consensus 49 ~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~ 117 (130)
+-.++.|+.|+|||... .+.+ .. .+.+|++||++++.++.+.+.+
T Consensus 162 ~v~~I~G~aGsGKTt~I----~~~~-~~-------------------~~~lVlTpT~~aa~~l~~kl~~ 206 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEI----LSRV-NF-------------------EEDLILVPGRQAAEMIRRRANA 206 (446)
T ss_dssp EEEEEEECTTSCHHHHH----HHHC-CT-------------------TTCEEEESCHHHHHHHHHHHTT
T ss_pred cEEEEEcCCCCCHHHHH----HHHh-cc-------------------CCeEEEeCCHHHHHHHHHHhhh
Confidence 35688999999999854 1111 11 1369999999999998887754
No 109
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.90 E-value=0.0078 Score=45.51 Aligned_cols=57 Identities=18% Similarity=0.194 Sum_probs=36.0
Q ss_pred cccccCCCcCCCCCHHHHHHHHHC---CCCCCcHHHHHHHhHHhcCCcEEEEccCCchHHHHH
Q psy3307 6 VSLKKQGFDDIQMTEIITNNIALA---RYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 6 ~~~~~~~f~~l~l~~~i~~~l~~~---~~~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~ 65 (130)
...|..+|+|.+--+...+.+.+. .+..|--++... +.-.+.+++.||+|+|||+..
T Consensus 164 ~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 164 NEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTTTHHHHH
T ss_pred CCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCCCHHHHH
Confidence 346778999999777777777552 111222121111 123468999999999999753
No 110
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.77 E-value=0.039 Score=38.76 Aligned_cols=20 Identities=25% Similarity=0.278 Sum_probs=17.2
Q ss_pred HhcCCcEEEEccCCchHHHH
Q psy3307 45 IISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 45 ~~~g~~~l~~aptGsGKT~~ 64 (130)
+..|.-+.+.+|||||||..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH
T ss_pred hCCCCEEEEECCCCccHHHH
Confidence 45678899999999999974
No 111
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.55 E-value=0.009 Score=43.03 Aligned_cols=57 Identities=18% Similarity=0.260 Sum_probs=38.1
Q ss_pred ccccccccCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHhHHh-----cCCcEEEEccCCchHHHHH
Q psy3307 3 ECLVSLKKQGFDDIQMTEIITNNIALARYDKPTPVQKYAIPVII-----SGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 3 ~~~~~~~~~~f~~l~l~~~i~~~l~~~~~~~~t~~Q~~~i~~~~-----~g~~~l~~aptGsGKT~~~ 65 (130)
+.....|..+|+++.-.+...+.+.+.=. .|.. .+... ..+.+++.||+|+|||...
T Consensus 7 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~---~~~~---~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 7 AILSEKPNVKWEDVAGLEGAKEALKEAVI---LPVK---FPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CSEEECCCCCGGGSCSCHHHHHHHHHHTH---HHHH---CGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred ceeecCCCCCHHHhcChHHHHHHHHHHHH---HHHh---CHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 34556777889999988888888865311 1211 12221 2357999999999999753
No 112
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=94.32 E-value=0.008 Score=42.56 Aligned_cols=55 Identities=22% Similarity=0.355 Sum_probs=27.5
Q ss_pred ccccCCCcCCCCCHHHHHHHHHCCCCCCcHHHH-HHHhHH--hcCCcEEEEccCCchHHHH
Q psy3307 7 SLKKQGFDDIQMTEIITNNIALARYDKPTPVQK-YAIPVI--ISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 7 ~~~~~~f~~l~l~~~i~~~l~~~~~~~~t~~Q~-~~i~~~--~~g~~~l~~aptGsGKT~~ 64 (130)
..|..+|+|++-.+++.+.+.+.= ..|+.. .++..+ .-.+.+++.+|+|+|||..
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i---~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAI---LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLL 60 (274)
T ss_dssp ---------CCHHHHHHHHHHHHH---THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHH
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHH
Confidence 346788999998888888776521 122211 122211 1123499999999999974
No 113
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.28 E-value=0.061 Score=36.95 Aligned_cols=53 Identities=13% Similarity=0.098 Sum_probs=31.3
Q ss_pred cCCCcCCCCCHHHHHHHHHCC--CCCCcHHHHHHHhHHhcCCcEEEEccCCchHHHHH
Q psy3307 10 KQGFDDIQMTEIITNNIALAR--YDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 10 ~~~f~~l~l~~~i~~~l~~~~--~~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~ 65 (130)
..+|+++.-.+...+.+.+.- +..+..+... .+...+.+++.||+|+|||...
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~---g~~~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQL---GAKVPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCCC---------CCCCCEEEEESCTTSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHc---CCCCCceEEEECCCCCCHHHHH
Confidence 467888887777777775421 1111111110 1123468999999999999743
No 114
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.19 E-value=0.014 Score=41.18 Aligned_cols=58 Identities=14% Similarity=0.181 Sum_probs=35.7
Q ss_pred ccccccCCCcCCCCCHHHHHHHHHCCCCCCcHHHH-HHHhHH-hcCCcEEEEccCCchHHHHH
Q psy3307 5 LVSLKKQGFDDIQMTEIITNNIALARYDKPTPVQK-YAIPVI-ISGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 5 ~~~~~~~~f~~l~l~~~i~~~l~~~~~~~~t~~Q~-~~i~~~-~~g~~~l~~aptGsGKT~~~ 65 (130)
....+..+|+++.-.+...+.+.+.=. .+... +.+..+ ..++.+++.||+|+|||...
T Consensus 12 ~~~~~~~~~~~i~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 12 VEGGAKVEWTDIAGQDVAKQALQEMVI---LPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp BCCSSCCCGGGSCCCHHHHHHHHHHTH---HHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred ccCCCCCCHHHhCChHHHHHHHHHHHH---hhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 344567789998878888777765310 11110 000011 13579999999999999753
No 115
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.15 E-value=0.051 Score=34.81 Aligned_cols=18 Identities=22% Similarity=0.455 Sum_probs=16.3
Q ss_pred cCCcEEEEccCCchHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~ 64 (130)
.|+.+++.+|+|+|||..
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 688999999999999964
No 116
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=94.09 E-value=0.064 Score=40.07 Aligned_cols=45 Identities=18% Similarity=0.331 Sum_probs=30.3
Q ss_pred hcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEcCcHHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELAT 109 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~ 109 (130)
....++++.|+||||||... -.++..+.... ..++|+=|..++..
T Consensus 51 ~~~~h~~i~G~tGsGKs~~~-~~li~~~~~~g------------------~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 51 AEPRHLLVNGATGTGKSVLL-RELAYTGLLRG------------------DRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGGCEEEEECTTSSHHHHH-HHHHHHHHHTT------------------CEEEEEEETTHHHH
T ss_pred cCcceEEEECCCCCCHHHHH-HHHHHHHHHCC------------------CcEEEEeCCCchhH
Confidence 34579999999999999874 44555544432 34666667666653
No 117
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=94.01 E-value=0.072 Score=36.73 Aligned_cols=54 Identities=22% Similarity=0.235 Sum_probs=31.6
Q ss_pred cccCCCcCCCCCHHHHHHHHHCC--CCCCcHHHHHHHhHHhcCCcEEEEccCCchHHHH
Q psy3307 8 LKKQGFDDIQMTEIITNNIALAR--YDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 8 ~~~~~f~~l~l~~~i~~~l~~~~--~~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~ 64 (130)
.+..+|+++.-.+...+.+.+.- +..+..++.. .....+.+++.+|+|+|||..
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~vll~G~~GtGKT~l 61 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKL---GGKIPKGVLMVGPPGTGKTLL 61 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHH
T ss_pred CCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHc---CCCCCCeEEEECcCCCCHHHH
Confidence 35578999988888777765420 0011000000 011235799999999999974
No 118
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.00 E-value=0.098 Score=40.36 Aligned_cols=40 Identities=15% Similarity=0.016 Sum_probs=26.2
Q ss_pred HHHHHHCCCCCCcHHHHHHHh-HHhcCCcEEEEccCCchHHHH
Q psy3307 23 TNNIALARYDKPTPVQKYAIP-VIISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 23 ~~~l~~~~~~~~t~~Q~~~i~-~~~~g~~~l~~aptGsGKT~~ 64 (130)
+..+.+.|. +++.+...+. .+..|..+++.||||||||..
T Consensus 236 ~~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 236 PIDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hhhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 344555553 3443333333 355888999999999999974
No 119
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=93.94 E-value=0.1 Score=37.05 Aligned_cols=45 Identities=18% Similarity=0.183 Sum_probs=31.9
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHH-HhHHhcCC-----cEEEEccCCchHHHHHH
Q psy3307 19 TEIITNNIALARYDKPTPVQKYA-IPVIISGR-----DVMACAQTGSGKTAAFL 66 (130)
Q Consensus 19 ~~~i~~~l~~~~~~~~t~~Q~~~-i~~~~~g~-----~~l~~aptGsGKT~~~~ 66 (130)
...+.+-|+..|+. +++-.. +..+++|+ .+++.||+|+|||+.+.
T Consensus 72 ~n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 72 SNRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp GCHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred hHHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 34788888888873 555333 45556553 59999999999998653
No 120
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.74 E-value=0.25 Score=32.57 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=14.7
Q ss_pred CcEEEEccCCchHHHH
Q psy3307 49 RDVMACAQTGSGKTAA 64 (130)
Q Consensus 49 ~~~l~~aptGsGKT~~ 64 (130)
+.+++.+|+|+|||..
T Consensus 55 ~~~~l~G~~GtGKT~l 70 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYL 70 (202)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 7899999999999974
No 121
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.71 E-value=0.022 Score=39.30 Aligned_cols=56 Identities=16% Similarity=0.093 Sum_probs=33.9
Q ss_pred cccccCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHhHHh--cCCcEEEEccCCchHHHH
Q psy3307 6 VSLKKQGFDDIQMTEIITNNIALARYDKPTPVQKYAIPVII--SGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 6 ~~~~~~~f~~l~l~~~i~~~l~~~~~~~~t~~Q~~~i~~~~--~g~~~l~~aptGsGKT~~ 64 (130)
...|..+|+++.-.+.....+++.-.. .. ....+..+- -.+.+++.+|+|+|||..
T Consensus 8 ~~~~~~~~~~i~g~~~~~~~l~~l~~~--~~-~~~~~~~~~~~~~~g~ll~G~~G~GKTtl 65 (254)
T 1ixz_A 8 TEAPKVTFKDVAGAEEAKEELKEIVEF--LK-NPSRFHEMGARIPKGVLLVGPPGVGKTHL 65 (254)
T ss_dssp CCCCSCCGGGCCSCHHHHHHHHHHHHH--HH-CHHHHHHTTCCCCSEEEEECCTTSSHHHH
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHH--HH-CHHHHHHcCCCCCCeEEEECCCCCCHHHH
Confidence 445678899998877777776553211 00 011222211 123499999999999964
No 122
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.45 E-value=0.15 Score=37.07 Aligned_cols=19 Identities=32% Similarity=0.424 Sum_probs=16.1
Q ss_pred cCCcEEEEccCCchHHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~~ 65 (130)
.+..+++.+|+|+|||...
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4578999999999999753
No 123
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.40 E-value=0.14 Score=37.61 Aligned_cols=18 Identities=33% Similarity=0.451 Sum_probs=15.3
Q ss_pred cCCcEEEEccCCchHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~ 64 (130)
.|.-+++.+|||||||..
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 455889999999999974
No 124
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.39 E-value=0.088 Score=35.70 Aligned_cols=31 Identities=32% Similarity=0.209 Sum_probs=25.8
Q ss_pred cHHHHHHHhHHhcCCcEEEEccCCchHHHHH
Q psy3307 35 TPVQKYAIPVIISGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 35 t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~ 65 (130)
+--|..++..+..|.-+.+.+|+|+|||...
T Consensus 9 ~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 9 TLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp SHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred CHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 4456778888889999999999999999753
No 125
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.33 E-value=0.046 Score=44.49 Aligned_cols=60 Identities=22% Similarity=0.356 Sum_probs=38.5
Q ss_pred ccccccccCCCcCCCCCHHHHHHHHHCC-C--CCCcHHHHHHHhHHhcCCcEEEEccCCchHHHHH
Q psy3307 3 ECLVSLKKQGFDDIQMTEIITNNIALAR-Y--DKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 3 ~~~~~~~~~~f~~l~l~~~i~~~l~~~~-~--~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~ 65 (130)
+..+..|..+|++.+.-++..+.|.+.= + ..|..++.. -+...+.+++.+|+|+|||+..
T Consensus 466 ~~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~---g~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 466 ETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF---GMTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSS---CCCCCSCCEEESSTTSSHHHHH
T ss_pred cccccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhc---CCCCCceEEEecCCCCCchHHH
Confidence 3445667789999998888888887642 1 111111000 0112368999999999999743
No 126
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=93.22 E-value=0.17 Score=38.92 Aligned_cols=30 Identities=17% Similarity=0.277 Sum_probs=23.2
Q ss_pred cHHHHHHHhHHhcCCcEEEEccCCchHHHH
Q psy3307 35 TPVQKYAIPVIISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 35 t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~ 64 (130)
...=..+.-.+..|.++++.||+|+|||..
T Consensus 28 ~~~i~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 28 SHAIRLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp HHHHHHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHHHHHHhcCCeeEeecCchHHHHHH
Confidence 334345555667889999999999999974
No 127
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.17 E-value=0.14 Score=35.01 Aligned_cols=51 Identities=12% Similarity=0.186 Sum_probs=31.9
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHhHHhcC----CcEEEEccCCchHHHHHHHHHHHHH
Q psy3307 20 EIITNNIALARYDKPTPVQKYAIPVIISG----RDVMACAQTGSGKTAAFLVPILNQM 73 (130)
Q Consensus 20 ~~i~~~l~~~~~~~~t~~Q~~~i~~~~~g----~~~l~~aptGsGKT~~~~l~~l~~~ 73 (130)
..|.+-|+-.++ .+... ...+..++++ +.+++.+|+|+|||... ..+...+
T Consensus 28 ~~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a-~ala~~l 82 (212)
T 1tue_A 28 RPIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG-MSFIHFI 82 (212)
T ss_dssp HHHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH-HHHHHHH
T ss_pred HHHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH-HHHHHHh
Confidence 456666665554 34444 4445555555 35999999999999754 4555544
No 128
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=93.17 E-value=0.066 Score=38.35 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=19.9
Q ss_pred HHHhHHhcCCcEEEEccCCchHHHH
Q psy3307 40 YAIPVIISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 40 ~~i~~~~~g~~~l~~aptGsGKT~~ 64 (130)
.+...+..|.++++.||+|+|||..
T Consensus 38 ~l~~~l~~~~~vll~G~pGtGKT~l 62 (331)
T 2r44_A 38 RLLIGICTGGHILLEGVPGLAKTLS 62 (331)
T ss_dssp HHHHHHHHTCCEEEESCCCHHHHHH
T ss_pred HHHHHHHcCCeEEEECCCCCcHHHH
Confidence 3334556789999999999999964
No 129
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=93.14 E-value=0.079 Score=38.47 Aligned_cols=28 Identities=7% Similarity=0.088 Sum_probs=20.2
Q ss_pred cCCcEEEEccCCchHHHHHHHHHHHHHHh
Q psy3307 47 SGRDVMACAQTGSGKTAAFLVPILNQMYE 75 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~~~l~~l~~~~~ 75 (130)
.+.++++.||+|+|||... -.++..+..
T Consensus 44 ~~~~lli~GpPGTGKT~~v-~~v~~~L~~ 71 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLV-NDVMDELIT 71 (318)
T ss_dssp CCCEEEEECCCSHHHHHHH-HHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH-HHHHHHHHH
Confidence 4468999999999999764 444455543
No 130
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.12 E-value=0.036 Score=38.89 Aligned_cols=55 Identities=16% Similarity=0.088 Sum_probs=33.5
Q ss_pred ccccCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHhHHh--cCCcEEEEccCCchHHHH
Q psy3307 7 SLKKQGFDDIQMTEIITNNIALARYDKPTPVQKYAIPVII--SGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 7 ~~~~~~f~~l~l~~~i~~~l~~~~~~~~t~~Q~~~i~~~~--~g~~~l~~aptGsGKT~~ 64 (130)
..+..+|+++.-.+...+.+++.-...-. ...+..+- -.+.+++.+|+|+|||..
T Consensus 33 ~~~~~~~~~i~g~~~~~~~l~~l~~~~~~---~~~l~~~~~~~~~gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 33 EAPKVTFKDVAGAEEAKEELKEIVEFLKN---PSRFHEMGARIPKGVLLVGPPGVGKTHL 89 (278)
T ss_dssp CCCCCCGGGSSSCHHHHHHHHHHHHHHHC---HHHHHHTTCCCCCEEEEECCTTSSHHHH
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHHHHC---HHHHHHcCCCCCCeEEEECCCcChHHHH
Confidence 34678899998888887777653211000 11222111 123499999999999974
No 131
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.01 E-value=0.051 Score=34.97 Aligned_cols=17 Identities=29% Similarity=0.407 Sum_probs=15.0
Q ss_pred CCcEEEEccCCchHHHH
Q psy3307 48 GRDVMACAQTGSGKTAA 64 (130)
Q Consensus 48 g~~~l~~aptGsGKT~~ 64 (130)
+..+++.||+|+|||..
T Consensus 43 ~~~~ll~G~~G~GKT~l 59 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAI 59 (195)
T ss_dssp SCEEEEECCTTSCHHHH
T ss_pred CCceEEECCCCCCHHHH
Confidence 46899999999999975
No 132
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=92.98 E-value=0.096 Score=37.89 Aligned_cols=18 Identities=50% Similarity=0.739 Sum_probs=15.3
Q ss_pred CCcEEEEccCCchHHHHH
Q psy3307 48 GRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 48 g~~~l~~aptGsGKT~~~ 65 (130)
++.+++.||+|+|||...
T Consensus 70 ~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp TCEEEEEESTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 358999999999999753
No 133
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=92.87 E-value=0.29 Score=37.47 Aligned_cols=52 Identities=17% Similarity=0.256 Sum_probs=38.8
Q ss_pred cCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHh
Q psy3307 47 SGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAY 120 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~ 120 (130)
.|....+.+-+||||++.. +.+.. ... ...|||+|+...|.|+++.++.+..
T Consensus 13 ~~~~~~l~g~~gs~ka~~~--a~l~~--~~~------------------~p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLV--AEIAE--RHA------------------GPVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp TTCEEEEECCCTTHHHHHH--HHHHH--HSS------------------SCEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CCCeEEEeCCCchHHHHHH--HHHHH--HhC------------------CCEEEEeCCHHHHHHHHHHHHhhCC
Confidence 4667889999999998742 32221 111 2389999999999999999998753
No 134
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=92.81 E-value=0.056 Score=36.35 Aligned_cols=19 Identities=16% Similarity=0.198 Sum_probs=16.3
Q ss_pred cCCcEEEEccCCchHHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~~ 65 (130)
.++.+++.||+|+|||...
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4689999999999999743
No 135
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.79 E-value=0.11 Score=35.17 Aligned_cols=19 Identities=26% Similarity=0.279 Sum_probs=16.4
Q ss_pred cCCcEEEEccCCchHHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~~ 65 (130)
.|.-+++.+|+|+|||...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~ 40 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFS 40 (247)
T ss_dssp TTCEEEEEECTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 5678899999999999754
No 136
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=92.74 E-value=0.16 Score=36.99 Aligned_cols=19 Identities=21% Similarity=0.336 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCchHHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~~ 65 (130)
..+.+++.+|+|+|||...
T Consensus 116 ~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCSEEEEESSTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3578999999999999753
No 137
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.66 E-value=0.33 Score=34.76 Aligned_cols=18 Identities=17% Similarity=0.320 Sum_probs=15.8
Q ss_pred CCcEEEEccCCchHHHHH
Q psy3307 48 GRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 48 g~~~l~~aptGsGKT~~~ 65 (130)
++++++.||+|+|||...
T Consensus 152 ~~~lll~G~~GtGKT~La 169 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLL 169 (308)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 689999999999999743
No 138
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=92.50 E-value=0.42 Score=33.41 Aligned_cols=18 Identities=28% Similarity=0.464 Sum_probs=15.6
Q ss_pred CCcEEEEccCCchHHHHH
Q psy3307 48 GRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 48 g~~~l~~aptGsGKT~~~ 65 (130)
+..+++.||+|+|||...
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 578999999999999743
No 139
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.47 E-value=0.063 Score=35.19 Aligned_cols=19 Identities=11% Similarity=0.211 Sum_probs=16.1
Q ss_pred hcCCcEEEEccCCchHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~ 64 (130)
+.|+-+++.+|+|+|||..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCCEEEEECCTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3577889999999999974
No 140
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.38 E-value=0.13 Score=34.33 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=17.8
Q ss_pred cCCcEEEEccCCchHHHHHHHHHHHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAAFLVPILNQMY 74 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~~~l~~l~~~~ 74 (130)
.|+-+.+.||+|+|||.. +-+|...+
T Consensus 3 ~g~~i~lvGpsGaGKSTL--l~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTL--LKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHH--HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHH--HHHHHhhC
Confidence 477899999999999974 34444443
No 141
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.34 E-value=0.084 Score=38.78 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=18.0
Q ss_pred HHhcCCcEEEEccCCchHHHH
Q psy3307 44 VIISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 44 ~~~~g~~~l~~aptGsGKT~~ 64 (130)
.+..|..+++.+|||||||..
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHH
T ss_pred HHhcCCEEEEECCCCCCHHHH
Confidence 345889999999999999973
No 142
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=92.32 E-value=0.046 Score=41.24 Aligned_cols=57 Identities=14% Similarity=0.135 Sum_probs=34.1
Q ss_pred cccccCCCcCCCCCHHHHHHHHHCCCCCCcHHHHH-HHh-HHhcCCcEEEEccCCchHHHHH
Q psy3307 6 VSLKKQGFDDIQMTEIITNNIALARYDKPTPVQKY-AIP-VIISGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 6 ~~~~~~~f~~l~l~~~i~~~l~~~~~~~~t~~Q~~-~i~-~~~~g~~~l~~aptGsGKT~~~ 65 (130)
...+..+|+++.-.+...+.+.+.-. .|.... .+. .....+.+++.||+|+|||...
T Consensus 126 ~~~~~~~~~di~G~~~~k~~l~~~v~---~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 126 IERPNVKWSDVAGLEGAKEALKEAVI---LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCCCCCGGGSCSCHHHHHHHHHHHT---HHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred ccCCCCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 34566788888877777777754211 111110 000 1123478999999999999753
No 143
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=92.31 E-value=0.055 Score=34.80 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=14.9
Q ss_pred CCcEEEEccCCchHHHH
Q psy3307 48 GRDVMACAQTGSGKTAA 64 (130)
Q Consensus 48 g~~~l~~aptGsGKT~~ 64 (130)
...+++.+|+|+|||..
T Consensus 43 ~~~vll~G~~G~GKT~l 59 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAI 59 (187)
T ss_dssp SCEEEEESCGGGCHHHH
T ss_pred CCceEEECCCCCCHHHH
Confidence 46899999999999964
No 144
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=92.28 E-value=0.13 Score=35.50 Aligned_cols=19 Identities=21% Similarity=0.344 Sum_probs=16.3
Q ss_pred hcCCcEEEEccCCchHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~ 64 (130)
..+..+++.|++|+|||..
T Consensus 27 ~~~~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELI 45 (265)
T ss_dssp TSCSCEEEECCTTSCHHHH
T ss_pred CCCCCEEEECCCCCcHHHH
Confidence 3568999999999999974
No 145
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.22 E-value=0.07 Score=37.67 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=14.8
Q ss_pred CcEEEEccCCchHHHHH
Q psy3307 49 RDVMACAQTGSGKTAAF 65 (130)
Q Consensus 49 ~~~l~~aptGsGKT~~~ 65 (130)
.++++.||+|+|||...
T Consensus 68 ~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 47999999999999754
No 146
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=92.10 E-value=0.085 Score=36.51 Aligned_cols=55 Identities=16% Similarity=0.109 Sum_probs=30.3
Q ss_pred cccCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHhHH--hcCCcEEEEccCCchHHHHH
Q psy3307 8 LKKQGFDDIQMTEIITNNIALARYDKPTPVQKYAIPVI--ISGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 8 ~~~~~f~~l~l~~~i~~~l~~~~~~~~t~~Q~~~i~~~--~~g~~~l~~aptGsGKT~~~ 65 (130)
.+...|+++.-.+...+.+.+.--.-..+ ..+..+ ...+.+++.||+|+|||...
T Consensus 5 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 5 KPNVRFKDMAGNEEAKEEVVEIVDFLKYP---ERYANLGAKIPKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CCCCCSTTSSSCTTTHHHHHHHHHHHHCH---HHHHHHSCCCCSCCCCBCSSCSSHHHHH
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHHCh---HHHHHCCCCCCceEEEECCCCCcHHHHH
Confidence 44567888876666655554320000000 111111 12457999999999999753
No 147
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.79 E-value=0.099 Score=37.96 Aligned_cols=19 Identities=53% Similarity=0.948 Sum_probs=17.2
Q ss_pred HhcCCcEEEEccCCchHHH
Q psy3307 45 IISGRDVMACAQTGSGKTA 63 (130)
Q Consensus 45 ~~~g~~~l~~aptGsGKT~ 63 (130)
+..|..+.+.+|||||||.
T Consensus 168 i~~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HHHTCCEEEEESTTSCHHH
T ss_pred ccCCCEEEEECCCCCCHHH
Confidence 4588999999999999997
No 148
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=91.74 E-value=0.053 Score=40.00 Aligned_cols=18 Identities=28% Similarity=0.444 Sum_probs=15.7
Q ss_pred CCcEEEEccCCchHHHHH
Q psy3307 48 GRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 48 g~~~l~~aptGsGKT~~~ 65 (130)
.+.+++.||+|+|||...
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 579999999999999753
No 149
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=91.63 E-value=0.43 Score=33.95 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=15.1
Q ss_pred CCcEEEEccCCchHHHH
Q psy3307 48 GRDVMACAQTGSGKTAA 64 (130)
Q Consensus 48 g~~~l~~aptGsGKT~~ 64 (130)
+..+++.||+|+|||..
T Consensus 37 ~~~lll~G~~GtGKT~l 53 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHL 53 (324)
T ss_dssp CSSEEEECSSSSSHHHH
T ss_pred CCeEEEECCCCCcHHHH
Confidence 46899999999999974
No 150
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=91.63 E-value=0.076 Score=34.57 Aligned_cols=20 Identities=25% Similarity=0.177 Sum_probs=16.6
Q ss_pred cCCcEEEEccCCchHHHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAAFL 66 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~~~ 66 (130)
.|.-+.+.+|+|||||..+-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 56778999999999997653
No 151
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=91.63 E-value=0.33 Score=32.06 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=18.3
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHH
Q psy3307 48 GRDVMACAQTGSGKTAAFLVPILNQMY 74 (130)
Q Consensus 48 g~~~l~~aptGsGKT~~~~l~~l~~~~ 74 (130)
|+-.++.+|.|+|||... +-++.++.
T Consensus 3 g~i~vi~G~~gsGKTT~l-l~~~~~~~ 28 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTEL-LSFVEIYK 28 (184)
T ss_dssp CCEEEEEESTTSSHHHHH-HHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHH-HHHHHHHH
Confidence 566789999999999865 33444443
No 152
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.51 E-value=0.2 Score=33.86 Aligned_cols=19 Identities=37% Similarity=0.518 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCchHHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~~ 65 (130)
.|.-+++.|++|+|||...
T Consensus 29 ~G~l~~i~G~pG~GKT~l~ 47 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFA 47 (251)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHH
Confidence 3578899999999999644
No 153
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=91.50 E-value=0.1 Score=35.03 Aligned_cols=18 Identities=22% Similarity=0.383 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCchHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~ 64 (130)
.|+-+++.||+|+|||..
T Consensus 7 ~g~~i~l~GpsGsGKsTl 24 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTV 24 (208)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 577889999999999974
No 154
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=91.41 E-value=0.11 Score=34.57 Aligned_cols=20 Identities=20% Similarity=0.134 Sum_probs=16.5
Q ss_pred hcCCcEEEEccCCchHHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~~ 65 (130)
..++.+++.|++|||||...
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHH
Confidence 36789999999999999753
No 155
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=91.35 E-value=0.088 Score=34.20 Aligned_cols=20 Identities=20% Similarity=0.238 Sum_probs=16.8
Q ss_pred hcCCcEEEEccCCchHHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~~ 65 (130)
..++.+++.+++|||||...
T Consensus 9 ~~~~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHH
Confidence 45678999999999999753
No 156
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.33 E-value=0.14 Score=37.77 Aligned_cols=20 Identities=25% Similarity=0.278 Sum_probs=16.8
Q ss_pred HhcCCcEEEEccCCchHHHH
Q psy3307 45 IISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 45 ~~~g~~~l~~aptGsGKT~~ 64 (130)
+..|..+++.+|||||||..
T Consensus 133 ~~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHH
T ss_pred hcCCCEEEEECCCCCCHHHH
Confidence 34677899999999999974
No 157
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=91.23 E-value=0.086 Score=34.46 Aligned_cols=20 Identities=25% Similarity=0.463 Sum_probs=16.8
Q ss_pred HhcCCcEEEEccCCchHHHH
Q psy3307 45 IISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 45 ~~~g~~~l~~aptGsGKT~~ 64 (130)
+..|.-+++.+|+|||||..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHH
T ss_pred CCCCeEEEEECCCCCCHHHH
Confidence 44677899999999999974
No 158
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=91.17 E-value=0.57 Score=39.61 Aligned_cols=64 Identities=19% Similarity=0.190 Sum_probs=41.7
Q ss_pred hcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKK 117 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~ 117 (130)
++|.. ++.|.-|||||.+..-=++..+....... .........++|+|+=|+.-|.++...+.+
T Consensus 15 l~g~~-lV~AsAGSGKT~~L~~r~lrLll~~g~~~-------~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~ 78 (1180)
T 1w36_B 15 LQGER-LIEASAGTGKTFTIAALYLRLLLGLGGSA-------AFPRPLTVEELLVVTFTEAATAELRGRIRS 78 (1180)
T ss_dssp CSSCE-EEECCTTSCHHHHHHHHHHHHHTTCSSSS-------SCSSCCCGGGEEEEESCHHHHHHHHHHHHH
T ss_pred CCCCE-EEEECCCCCHHHHHHHHHHHHHhcCCccc-------ccCCCCCHHHEEEEeccHHHHHHHHHHHHH
Confidence 35555 89999999999987666666665322000 000111225799999999888888777754
No 159
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=91.15 E-value=0.12 Score=34.17 Aligned_cols=18 Identities=28% Similarity=0.416 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCchHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~ 64 (130)
.|.-+.+.||+|||||..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl 23 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSL 23 (205)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 577889999999999974
No 160
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=91.13 E-value=0.31 Score=32.46 Aligned_cols=20 Identities=25% Similarity=0.235 Sum_probs=16.3
Q ss_pred hcCCcEEEEccCCchHHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~~ 65 (130)
..|.-+++.+|+|+|||...
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHH
Confidence 35678899999999999643
No 161
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.10 E-value=0.11 Score=34.35 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=16.3
Q ss_pred HhcCCcEEEEccCCchHHHH
Q psy3307 45 IISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 45 ~~~g~~~l~~aptGsGKT~~ 64 (130)
+..|.-+.+.||+|||||..
T Consensus 3 i~~g~~i~l~G~~GsGKSTl 22 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTV 22 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHH
T ss_pred CCCCCEEEEECCCCCCHHHH
Confidence 34678899999999999974
No 162
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=90.70 E-value=0.32 Score=33.39 Aligned_cols=27 Identities=22% Similarity=0.208 Sum_probs=19.3
Q ss_pred cCCcEEEEccCCchHHHHHHHHHHHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAAFLVPILNQMY 74 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~~~l~~l~~~~ 74 (130)
.|.-+++.+++|+|||... +-.+.++.
T Consensus 11 ~G~i~litG~mGsGKTT~l-l~~~~r~~ 37 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAEL-IRRLHRLE 37 (223)
T ss_dssp CCEEEEEECSTTSCHHHHH-HHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHH-HHHHHHHH
Confidence 4667788999999999765 44444444
No 163
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=90.65 E-value=0.16 Score=33.42 Aligned_cols=16 Identities=31% Similarity=0.536 Sum_probs=14.1
Q ss_pred CcEEEEccCCchHHHH
Q psy3307 49 RDVMACAQTGSGKTAA 64 (130)
Q Consensus 49 ~~~l~~aptGsGKT~~ 64 (130)
..+++.||+|+|||..
T Consensus 39 ~~~ll~G~~G~GKT~l 54 (226)
T 2chg_A 39 PHLLFSGPPGTGKTAT 54 (226)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4699999999999964
No 164
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=90.64 E-value=0.13 Score=33.16 Aligned_cols=18 Identities=17% Similarity=0.313 Sum_probs=15.1
Q ss_pred CCcEEEEccCCchHHHHH
Q psy3307 48 GRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 48 g~~~l~~aptGsGKT~~~ 65 (130)
++-+++.|++|||||...
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 466899999999999753
No 165
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=90.63 E-value=0.22 Score=37.47 Aligned_cols=27 Identities=22% Similarity=0.334 Sum_probs=18.6
Q ss_pred HHHHHhHHh--cCCcEEEEccCCchHHHH
Q psy3307 38 QKYAIPVII--SGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 38 Q~~~i~~~~--~g~~~l~~aptGsGKT~~ 64 (130)
+..++..++ .|.-+++.+|||||||..
T Consensus 155 ~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 155 NHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp HHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 334444333 455689999999999974
No 166
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=90.58 E-value=0.16 Score=32.61 Aligned_cols=17 Identities=24% Similarity=0.546 Sum_probs=14.9
Q ss_pred CCcEEEEccCCchHHHH
Q psy3307 48 GRDVMACAQTGSGKTAA 64 (130)
Q Consensus 48 g~~~l~~aptGsGKT~~ 64 (130)
+..+.+.+++|||||..
T Consensus 4 ~~~i~l~G~~GsGKSTl 20 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTI 20 (173)
T ss_dssp CCCEEEECCTTSCHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 56799999999999974
No 167
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=90.55 E-value=0.16 Score=34.43 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=16.3
Q ss_pred HhcCCcEEEEccCCchHHHH
Q psy3307 45 IISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 45 ~~~g~~~l~~aptGsGKT~~ 64 (130)
+..|+-+.+.+|+|+|||..
T Consensus 20 i~~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp --CCCCEEEECSTTSSHHHH
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 45788999999999999974
No 168
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=90.55 E-value=0.16 Score=33.36 Aligned_cols=17 Identities=24% Similarity=0.569 Sum_probs=13.9
Q ss_pred CCcEEEEccCCchHHHH
Q psy3307 48 GRDVMACAQTGSGKTAA 64 (130)
Q Consensus 48 g~~~l~~aptGsGKT~~ 64 (130)
|+-+.+.+|+|+|||..
T Consensus 1 ~~ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCCEEEESSSSSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 34578899999999974
No 169
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=90.55 E-value=0.14 Score=34.16 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=16.5
Q ss_pred HHhcCCcEEEEccCCchHHHH
Q psy3307 44 VIISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 44 ~~~~g~~~l~~aptGsGKT~~ 64 (130)
.+..|+-+.+.+|+|+|||..
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHH
Confidence 567889999999999999974
No 170
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=90.45 E-value=0.12 Score=36.65 Aligned_cols=16 Identities=19% Similarity=0.121 Sum_probs=14.1
Q ss_pred CcEEEEccCCchHHHH
Q psy3307 49 RDVMACAQTGSGKTAA 64 (130)
Q Consensus 49 ~~~l~~aptGsGKT~~ 64 (130)
+.+++.||+|+|||..
T Consensus 37 ~~lLl~GppGtGKT~l 52 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQ 52 (293)
T ss_dssp SEEEEEECTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 5789999999999974
No 171
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=90.43 E-value=0.14 Score=33.29 Aligned_cols=18 Identities=22% Similarity=0.233 Sum_probs=15.3
Q ss_pred CCcEEEEccCCchHHHHH
Q psy3307 48 GRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 48 g~~~l~~aptGsGKT~~~ 65 (130)
++.+++.|++|||||...
T Consensus 5 ~~~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVG 22 (185)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 567999999999999743
No 172
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=90.40 E-value=0.13 Score=32.69 Aligned_cols=15 Identities=27% Similarity=0.426 Sum_probs=13.0
Q ss_pred cEEEEccCCchHHHH
Q psy3307 50 DVMACAQTGSGKTAA 64 (130)
Q Consensus 50 ~~l~~aptGsGKT~~ 64 (130)
-+++.|++|||||..
T Consensus 3 ~I~l~G~~GsGKsT~ 17 (179)
T 3lw7_A 3 VILITGMPGSGKSEF 17 (179)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999974
No 173
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=90.40 E-value=0.12 Score=35.87 Aligned_cols=17 Identities=35% Similarity=0.255 Sum_probs=14.8
Q ss_pred CcEEEEccCCchHHHHH
Q psy3307 49 RDVMACAQTGSGKTAAF 65 (130)
Q Consensus 49 ~~~l~~aptGsGKT~~~ 65 (130)
..+++.||+|+|||...
T Consensus 65 ~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 58999999999999753
No 174
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=90.40 E-value=0.37 Score=32.19 Aligned_cols=28 Identities=14% Similarity=0.132 Sum_probs=19.5
Q ss_pred cCCcEEEEccCCchHHHHHHHHHHHHHHh
Q psy3307 47 SGRDVMACAQTGSGKTAAFLVPILNQMYE 75 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~~~l~~l~~~~~ 75 (130)
.|+=.++.++.|||||... +-++.++..
T Consensus 7 ~g~i~v~~G~mgsGKTT~l-l~~a~r~~~ 34 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEEL-IRRIRRAKI 34 (191)
T ss_dssp CCEEEEEECSTTSSHHHHH-HHHHHHHHH
T ss_pred CCEEEEEECCCCCcHHHHH-HHHHHHHHH
Confidence 3566788999999999765 444555443
No 175
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=90.39 E-value=0.17 Score=33.73 Aligned_cols=20 Identities=20% Similarity=0.433 Sum_probs=17.0
Q ss_pred HhcCCcEEEEccCCchHHHH
Q psy3307 45 IISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 45 ~~~g~~~l~~aptGsGKT~~ 64 (130)
...|+-+++.||+|||||..
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl 28 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTL 28 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHH
T ss_pred cccCCEEEEECCCCCCHHHH
Confidence 44678999999999999974
No 176
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=90.34 E-value=0.23 Score=35.46 Aligned_cols=18 Identities=28% Similarity=0.471 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCchHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~ 64 (130)
.+.++++.+++|+|||..
T Consensus 24 ~~~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELV 41 (304)
T ss_dssp TTSCEEEESCTTSCHHHH
T ss_pred CCCcEEEECCCCchHHHH
Confidence 567999999999999974
No 177
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=90.16 E-value=0.3 Score=32.32 Aligned_cols=15 Identities=27% Similarity=0.395 Sum_probs=13.5
Q ss_pred cEEEEccCCchHHHH
Q psy3307 50 DVMACAQTGSGKTAA 64 (130)
Q Consensus 50 ~~l~~aptGsGKT~~ 64 (130)
.+++.||+|+|||..
T Consensus 47 ~~ll~G~~G~GKT~l 61 (250)
T 1njg_A 47 AYLFSGTRGVGKTSI 61 (250)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 689999999999964
No 178
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=90.08 E-value=0.16 Score=33.64 Aligned_cols=18 Identities=39% Similarity=0.556 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCchHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~ 64 (130)
.|.-+.+.+++|||||..
T Consensus 28 ~g~~i~l~G~~GsGKSTl 45 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTI 45 (200)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 578899999999999974
No 179
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=90.08 E-value=0.42 Score=43.76 Aligned_cols=47 Identities=13% Similarity=0.229 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHCCCCCCcHHH-HHHH---hHHhcCCcEEEEccCCchHHHHH
Q psy3307 18 MTEIITNNIALARYDKPTPVQ-KYAI---PVIISGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 18 l~~~i~~~l~~~~~~~~t~~Q-~~~i---~~~~~g~~~l~~aptGsGKT~~~ 65 (130)
+.+.+.+.+.+.++ .+++.+ ..++ ..+.....+++.||||||||.++
T Consensus 890 l~~~i~~~~~~~~l-~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~ 940 (2695)
T 4akg_A 890 IVQCLKDAGQRSGF-SMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATW 940 (2695)
T ss_dssp HHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHHHcCC-cccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHH
Confidence 44556677777887 456654 2222 23345678999999999999976
No 180
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=90.02 E-value=0.15 Score=38.50 Aligned_cols=19 Identities=42% Similarity=0.655 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCchHHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~~ 65 (130)
.++.+++.+|+|+|||...
T Consensus 62 ~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCcCCHHHHH
Confidence 3468999999999999754
No 181
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=90.01 E-value=0.17 Score=34.58 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=16.4
Q ss_pred HHhcCCcEEEEccCCchHHHH
Q psy3307 44 VIISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 44 ~~~~g~~~l~~aptGsGKT~~ 64 (130)
+.-.|+-+.+.||+|+|||..
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHH
Confidence 355788999999999999974
No 182
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=89.95 E-value=0.39 Score=44.58 Aligned_cols=47 Identities=15% Similarity=0.204 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHCCCCCCcHHHH-HHHh---HHhcCCcEEEEccCCchHHHHH
Q psy3307 18 MTEIITNNIALARYDKPTPVQK-YAIP---VIISGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 18 l~~~i~~~l~~~~~~~~t~~Q~-~~i~---~~~~g~~~l~~aptGsGKT~~~ 65 (130)
|.+.+.+.+.+.|+ .+++.+. +++. .+.-...+++.||+|||||.++
T Consensus 873 l~~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~ 923 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSW 923 (3245)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHH
T ss_pred HHHHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHH
Confidence 44667777788888 4666443 3332 2234467999999999999976
No 183
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=89.87 E-value=0.18 Score=33.65 Aligned_cols=16 Identities=25% Similarity=0.596 Sum_probs=14.0
Q ss_pred CcEEEEccCCchHHHH
Q psy3307 49 RDVMACAQTGSGKTAA 64 (130)
Q Consensus 49 ~~~l~~aptGsGKT~~ 64 (130)
|-+++.||+|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5689999999999973
No 184
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=89.85 E-value=0.16 Score=36.67 Aligned_cols=18 Identities=33% Similarity=0.482 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCchHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~ 64 (130)
.+..+++.||+|+|||..
T Consensus 43 ~~~~vll~G~~G~GKT~l 60 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAV 60 (387)
T ss_dssp CCCCEEECBCTTSSHHHH
T ss_pred CCCcEEEECCCCCCHHHH
Confidence 457899999999999975
No 185
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=89.79 E-value=0.48 Score=34.81 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=16.3
Q ss_pred cCCcEEEEccCCchHHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~~ 65 (130)
.+.++++.++||+|||...
T Consensus 34 ~~~~~~i~G~~G~GKs~~~ 52 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTA 52 (392)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred ccCceEEEcCCCCCHHHHH
Confidence 4679999999999999754
No 186
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=89.67 E-value=0.19 Score=36.72 Aligned_cols=52 Identities=17% Similarity=0.271 Sum_probs=29.3
Q ss_pred cccCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHhHHh-----cCCcEEEEccCCchHHHHH
Q psy3307 8 LKKQGFDDIQMTEIITNNIALARYDKPTPVQKYAIPVII-----SGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 8 ~~~~~f~~l~l~~~i~~~l~~~~~~~~t~~Q~~~i~~~~-----~g~~~l~~aptGsGKT~~~ 65 (130)
.+..+|+++.-.+...+.+.+.=. .+.. .+.++ ..+.+++.||+|+|||...
T Consensus 45 ~~~~~~~di~G~~~~~~~l~~~v~---~~~~---~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 45 KPNVKWEDVAGLEGAKEALKEAVI---LPVK---FPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp --CCCGGGSCCGGGHHHHHHHHTH---HHHH---CGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHH---HHHh---CHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 455677777665666666544210 1110 11222 2357999999999999753
No 187
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=89.65 E-value=0.18 Score=33.07 Aligned_cols=18 Identities=28% Similarity=0.602 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCchHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~ 64 (130)
.+..+++.+++|||||..
T Consensus 9 ~~~~I~l~G~~GsGKSTv 26 (184)
T 1y63_A 9 KGINILITGTPGTGKTSM 26 (184)
T ss_dssp SSCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467899999999999975
No 188
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=89.57 E-value=0.25 Score=32.98 Aligned_cols=18 Identities=28% Similarity=0.342 Sum_probs=15.2
Q ss_pred cCCcEEEEccCCchHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~ 64 (130)
.|.-+.+.+|+|||||..
T Consensus 21 ~g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTL 38 (208)
T ss_dssp SCEEEEEECCTTSCTHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 466788999999999973
No 189
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=89.53 E-value=0.18 Score=32.38 Aligned_cols=16 Identities=25% Similarity=0.306 Sum_probs=13.4
Q ss_pred cEEEEccCCchHHHHH
Q psy3307 50 DVMACAQTGSGKTAAF 65 (130)
Q Consensus 50 ~~l~~aptGsGKT~~~ 65 (130)
-+++.|++|||||...
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 4789999999999743
No 190
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=89.51 E-value=0.22 Score=33.72 Aligned_cols=21 Identities=33% Similarity=0.444 Sum_probs=17.5
Q ss_pred HhcCCcEEEEccCCchHHHHH
Q psy3307 45 IISGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 45 ~~~g~~~l~~aptGsGKT~~~ 65 (130)
+..|.-+.+.+|+|+|||...
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl 47 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFA 47 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHH
Confidence 346788999999999999754
No 191
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=89.49 E-value=0.15 Score=32.83 Aligned_cols=19 Identities=26% Similarity=0.267 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCchHHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~~ 65 (130)
.|..+++.+++|||||...
T Consensus 7 ~g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp TSEEEEEECSTTSCHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3567899999999999743
No 192
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=89.42 E-value=0.19 Score=35.92 Aligned_cols=17 Identities=24% Similarity=0.366 Sum_probs=14.9
Q ss_pred CcEEEEccCCchHHHHH
Q psy3307 49 RDVMACAQTGSGKTAAF 65 (130)
Q Consensus 49 ~~~l~~aptGsGKT~~~ 65 (130)
..+++.||+|+|||...
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 58999999999999753
No 193
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=89.32 E-value=0.21 Score=33.72 Aligned_cols=19 Identities=11% Similarity=0.316 Sum_probs=16.7
Q ss_pred hcCCcEEEEccCCchHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~ 64 (130)
..|+-+++.||+|+|||..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp CSCCEEEEECCTTSSHHHH
T ss_pred CCCCEEEEECcCCCCHHHH
Confidence 4788999999999999973
No 194
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=89.31 E-value=0.21 Score=36.44 Aligned_cols=18 Identities=33% Similarity=0.449 Sum_probs=15.4
Q ss_pred CCcEEEEccCCchHHHHH
Q psy3307 48 GRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 48 g~~~l~~aptGsGKT~~~ 65 (130)
..++++.||+|+|||...
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 468999999999999753
No 195
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=89.31 E-value=0.18 Score=34.99 Aligned_cols=16 Identities=31% Similarity=0.158 Sum_probs=13.2
Q ss_pred cEEEEccCCchHHHHH
Q psy3307 50 DVMACAQTGSGKTAAF 65 (130)
Q Consensus 50 ~~l~~aptGsGKT~~~ 65 (130)
-+++.+|+|||||...
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 3688999999999743
No 196
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=89.21 E-value=0.065 Score=43.51 Aligned_cols=60 Identities=18% Similarity=0.229 Sum_probs=34.4
Q ss_pred cccccccCCCcCCCCCHHHHHHHHHCC-CCCCcHHHHHHHhHHhcCCcEEEEccCCchHHHH
Q psy3307 4 CLVSLKKQGFDDIQMTEIITNNIALAR-YDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 4 ~~~~~~~~~f~~l~l~~~i~~~l~~~~-~~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~ 64 (130)
.....+...|+++.-.+.+.+.+.+.- +..-.+..... ..+..++.+++.+|+|+|||..
T Consensus 467 ~~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~-~~~~~~~~vLL~GppGtGKT~L 527 (806)
T 1ypw_A 467 TVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLK-FGMTPSKGVLFYGPPGCGKTLL 527 (806)
T ss_dssp CCCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTC-CCCCCCCCCCCBCCTTSSHHHH
T ss_pred hcccCccccccccccchhhhhhHHHHHHhhhhchHHHHh-cCCCCCceeEEECCCCCCHHHH
Confidence 344556677888776666666665532 11001000000 0123567899999999999974
No 197
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=89.16 E-value=0.2 Score=32.51 Aligned_cols=17 Identities=24% Similarity=0.401 Sum_probs=14.9
Q ss_pred CCcEEEEccCCchHHHH
Q psy3307 48 GRDVMACAQTGSGKTAA 64 (130)
Q Consensus 48 g~~~l~~aptGsGKT~~ 64 (130)
|.-+++.+++|||||..
T Consensus 3 ~~~I~i~G~~GsGKsT~ 19 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTS 19 (192)
T ss_dssp CCEEEEECCTTSCHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 56789999999999974
No 198
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=89.15 E-value=0.3 Score=35.19 Aligned_cols=27 Identities=15% Similarity=0.118 Sum_probs=20.3
Q ss_pred hcCCcEEEEccCCchHHHHHHHHHHHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAAFLVPILNQMY 74 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~~~l~~l~~~~ 74 (130)
-.|+-+.+.+|+|+|||. ++-+|..++
T Consensus 124 ~~Ge~vaIvGpsGsGKST--Ll~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSM--LCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHH--HHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHH--HHHHHhhhc
Confidence 378899999999999997 344444444
No 199
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.99 E-value=0.32 Score=34.73 Aligned_cols=17 Identities=24% Similarity=0.483 Sum_probs=14.6
Q ss_pred CcEEEEccCCchHHHHH
Q psy3307 49 RDVMACAQTGSGKTAAF 65 (130)
Q Consensus 49 ~~~l~~aptGsGKT~~~ 65 (130)
.++++.||+|+|||...
T Consensus 59 ~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 46999999999999653
No 200
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=88.85 E-value=0.19 Score=35.36 Aligned_cols=17 Identities=29% Similarity=0.311 Sum_probs=14.6
Q ss_pred CcEEEEccCCchHHHHH
Q psy3307 49 RDVMACAQTGSGKTAAF 65 (130)
Q Consensus 49 ~~~l~~aptGsGKT~~~ 65 (130)
..+++.||+|+|||...
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 37999999999999754
No 201
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=88.84 E-value=0.18 Score=38.62 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCchHHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~~ 65 (130)
..+.+++.||+|+|||+..
T Consensus 237 ~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCCEEEEECSTTSSHHHHH
T ss_pred CCCcEEEECcCCCCHHHHH
Confidence 3468999999999999753
No 202
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=88.75 E-value=0.21 Score=31.81 Aligned_cols=15 Identities=7% Similarity=-0.086 Sum_probs=13.0
Q ss_pred cEEEEccCCchHHHH
Q psy3307 50 DVMACAQTGSGKTAA 64 (130)
Q Consensus 50 ~~l~~aptGsGKT~~ 64 (130)
-+++.|+.|||||..
T Consensus 3 ~i~l~G~~GsGKsT~ 17 (173)
T 3kb2_A 3 LIILEGPDCCFKSTV 17 (173)
T ss_dssp EEEEECSSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999974
No 203
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.71 E-value=0.84 Score=32.63 Aligned_cols=43 Identities=14% Similarity=0.199 Sum_probs=28.3
Q ss_pred CCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHhHHhcCCcEEEEccCCchHHHHH
Q psy3307 11 QGFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 11 ~~f~~l~l~~~i~~~l~~~~~~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~ 65 (130)
.+|+++--++.+.+.+++.=... -+...+++.||+|+|||...
T Consensus 11 ~~~~~~vg~~~~~~~l~~~~~~~------------~~~~~~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 11 KSLNALSHNEELTNFLKSLSDQP------------RDLPHLLLYGPNGTGKKTRC 53 (354)
T ss_dssp CSGGGCCSCHHHHHHHHTTTTCT------------TCCCCEEEECSTTSSHHHHH
T ss_pred CCHHHhcCCHHHHHHHHHHHhhC------------CCCCeEEEECCCCCCHHHHH
Confidence 45777777777777776431110 12235999999999999753
No 204
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=88.68 E-value=0.69 Score=33.13 Aligned_cols=27 Identities=33% Similarity=0.617 Sum_probs=19.1
Q ss_pred cCCcEEEEccCCchHHHHHHHHHHHHHHh
Q psy3307 47 SGRDVMACAQTGSGKTAAFLVPILNQMYE 75 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~~~l~~l~~~~~ 75 (130)
.|.-+.+.+|+|+|||.. +..+..++.
T Consensus 101 ~g~vi~lvG~nGsGKTTl--l~~Lagll~ 127 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTT--IAKLGRYYQ 127 (304)
T ss_dssp SSSEEEEECSTTSSHHHH--HHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHH--HHHHHHHHH
Confidence 356788999999999974 444444444
No 205
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.55 E-value=0.2 Score=34.12 Aligned_cols=18 Identities=28% Similarity=0.518 Sum_probs=15.3
Q ss_pred cCCcEEEEccCCchHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~ 64 (130)
.|+-+++.+|||+|||..
T Consensus 33 ~g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSET 50 (205)
T ss_dssp TTEEEEEECCCTTTTHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 567899999999999853
No 206
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=88.54 E-value=0.61 Score=39.29 Aligned_cols=38 Identities=21% Similarity=0.270 Sum_probs=25.1
Q ss_pred EEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEcCcH
Q psy3307 52 MACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTR 105 (130)
Q Consensus 52 l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~ 105 (130)
++.|..|||||...+-=+...+..... +.+++++||..
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~~~~----------------~~~il~lVP~q 42 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRRAPF----------------GKPIIFLVPDQ 42 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHCTT----------------SSCEEEECCGG
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhCCC----------------CCcEEEEecCc
Confidence 678899999998765444444443211 14688888865
No 207
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=88.48 E-value=0.18 Score=35.66 Aligned_cols=18 Identities=22% Similarity=0.248 Sum_probs=15.4
Q ss_pred CCcEEEEccCCchHHHHH
Q psy3307 48 GRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 48 g~~~l~~aptGsGKT~~~ 65 (130)
...+++.||+|+|||...
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 378999999999999753
No 208
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=88.45 E-value=0.37 Score=37.76 Aligned_cols=15 Identities=13% Similarity=0.408 Sum_probs=13.9
Q ss_pred cEEEEccCCchHHHH
Q psy3307 50 DVMACAQTGSGKTAA 64 (130)
Q Consensus 50 ~~l~~aptGsGKT~~ 64 (130)
++++.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999974
No 209
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=88.33 E-value=0.16 Score=32.91 Aligned_cols=18 Identities=28% Similarity=0.484 Sum_probs=15.1
Q ss_pred cCCcEEEEccCCchHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~ 64 (130)
.|..+++.|++|||||..
T Consensus 3 ~g~~I~l~G~~GsGKST~ 20 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQ 20 (186)
T ss_dssp CEEEEEEECCTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 356789999999999974
No 210
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=88.32 E-value=0.52 Score=31.32 Aligned_cols=18 Identities=33% Similarity=0.512 Sum_probs=14.6
Q ss_pred CCcEEEEccCCchHHHHH
Q psy3307 48 GRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 48 g~~~l~~aptGsGKT~~~ 65 (130)
|.-+.+.+|+|+|||...
T Consensus 1 G~~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CCCEEEESCCSSCHHHHH
T ss_pred CCEEEEECCCCChHHHHH
Confidence 456789999999999743
No 211
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=88.20 E-value=0.25 Score=35.85 Aligned_cols=16 Identities=38% Similarity=0.397 Sum_probs=13.3
Q ss_pred cEEEEccCCchHHHHH
Q psy3307 50 DVMACAQTGSGKTAAF 65 (130)
Q Consensus 50 ~~l~~aptGsGKT~~~ 65 (130)
-+++.+|||||||...
T Consensus 12 ~i~i~GptgsGKt~la 27 (316)
T 3foz_A 12 AIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 4788999999999643
No 212
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=88.16 E-value=0.23 Score=36.44 Aligned_cols=18 Identities=22% Similarity=0.313 Sum_probs=14.7
Q ss_pred CCcEEEEccCCchHHHHH
Q psy3307 48 GRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 48 g~~~l~~aptGsGKT~~~ 65 (130)
++-+++.||||||||...
T Consensus 40 ~~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLS 57 (339)
T ss_dssp CEEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 346899999999999643
No 213
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=88.06 E-value=0.16 Score=36.39 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=15.2
Q ss_pred cCCcEEEEccCCchHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~ 64 (130)
...++++.||+|+|||..
T Consensus 44 ~~~~vLl~G~~GtGKT~l 61 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTA 61 (350)
T ss_dssp GGCCEEEECCGGGCTTHH
T ss_pred CCceEEEECCCCccHHHH
Confidence 345799999999999974
No 214
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=88.05 E-value=0.26 Score=35.87 Aligned_cols=17 Identities=29% Similarity=0.249 Sum_probs=13.7
Q ss_pred CcEEEEccCCchHHHHH
Q psy3307 49 RDVMACAQTGSGKTAAF 65 (130)
Q Consensus 49 ~~~l~~aptGsGKT~~~ 65 (130)
+-+++.||||||||...
T Consensus 4 ~~i~i~GptgsGKt~la 20 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCcCCHHHHH
Confidence 35788999999999643
No 215
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=87.96 E-value=0.18 Score=32.98 Aligned_cols=17 Identities=18% Similarity=0.335 Sum_probs=13.8
Q ss_pred CcEEEEccCCchHHHHH
Q psy3307 49 RDVMACAQTGSGKTAAF 65 (130)
Q Consensus 49 ~~~l~~aptGsGKT~~~ 65 (130)
.-+++.+|+|+|||...
T Consensus 3 ~ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 45688999999999743
No 216
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=87.80 E-value=0.87 Score=34.37 Aligned_cols=27 Identities=26% Similarity=0.194 Sum_probs=19.1
Q ss_pred cCCcEEEEccCCchHHHHHHHHHHHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAAFLVPILNQMY 74 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~~~l~~l~~~~ 74 (130)
.|.-+++.|++|+|||... +-+.....
T Consensus 196 ~G~liiIaG~pG~GKTtla-l~ia~~~a 222 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFA-LKQAKNMS 222 (444)
T ss_dssp SSCEEEEEECSSSSHHHHH-HHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHH-HHHHHHHH
Confidence 4578899999999999654 44444443
No 217
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=87.71 E-value=0.3 Score=33.63 Aligned_cols=18 Identities=33% Similarity=0.434 Sum_probs=16.0
Q ss_pred hcCCcEEEEccCCchHHH
Q psy3307 46 ISGRDVMACAQTGSGKTA 63 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~ 63 (130)
..|.-+.+.+|+|||||.
T Consensus 29 ~~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKST 46 (235)
T ss_dssp CTTCEEEEECSTTSSHHH
T ss_pred cCCCEEEEECCCCCcHHH
Confidence 367888999999999997
No 218
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=87.58 E-value=0.94 Score=32.39 Aligned_cols=19 Identities=32% Similarity=0.240 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCchHHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~~ 65 (130)
.|.-+++.|++|+|||...
T Consensus 67 ~G~l~li~G~pG~GKTtl~ 85 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFA 85 (315)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHH
Confidence 4578999999999999643
No 219
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=87.48 E-value=0.3 Score=32.13 Aligned_cols=15 Identities=27% Similarity=0.543 Sum_probs=12.8
Q ss_pred cEEEEccCCchHHHH
Q psy3307 50 DVMACAQTGSGKTAA 64 (130)
Q Consensus 50 ~~l~~aptGsGKT~~ 64 (130)
.+.+.+|+|+|||..
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999974
No 220
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=87.46 E-value=0.43 Score=34.44 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=14.2
Q ss_pred cEEEEccCCchHHHHH
Q psy3307 50 DVMACAQTGSGKTAAF 65 (130)
Q Consensus 50 ~~l~~aptGsGKT~~~ 65 (130)
.+++.||+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999753
No 221
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=87.38 E-value=0.37 Score=31.94 Aligned_cols=19 Identities=26% Similarity=0.179 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCchHHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~~ 65 (130)
.|.-+++.+|+|+|||...
T Consensus 19 ~G~~~~i~G~~GsGKTtl~ 37 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLA 37 (220)
T ss_dssp TTSEEEEECSTTSSHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4678899999999999754
No 222
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=87.33 E-value=0.33 Score=34.83 Aligned_cols=18 Identities=33% Similarity=0.532 Sum_probs=15.6
Q ss_pred CCcEEEEccCCchHHHHH
Q psy3307 48 GRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 48 g~~~l~~aptGsGKT~~~ 65 (130)
+..+++.||+|+|||...
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 578999999999999753
No 223
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=87.29 E-value=1.5 Score=33.68 Aligned_cols=52 Identities=19% Similarity=0.202 Sum_probs=31.6
Q ss_pred ccCCCcCCCCCHHHHHHHHHCCC--CCCcHHHHHHHhHH--hcCCcEEEEccCCchHHHHH
Q psy3307 9 KKQGFDDIQMTEIITNNIALARY--DKPTPVQKYAIPVI--ISGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 9 ~~~~f~~l~l~~~i~~~l~~~~~--~~~t~~Q~~~i~~~--~~g~~~l~~aptGsGKT~~~ 65 (130)
+..+|+++.-.++....+++.-. ..+ ..+..+ .-.+.+++.+|+|+|||+..
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~-----~~~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNP-----SRFHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCG-----GGTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhch-----hhhhhccCCCCceEEEECCCCCCHHHHH
Confidence 66789999877777777654311 010 011111 01245999999999999743
No 224
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=87.28 E-value=0.27 Score=32.59 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=16.3
Q ss_pred hcCCcEEEEccCCchHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~ 64 (130)
..|.-+.+.+++|||||..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl 41 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTL 41 (200)
T ss_dssp SCCEEEEEECSTTSSHHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 4577899999999999974
No 225
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=87.24 E-value=0.26 Score=32.01 Aligned_cols=17 Identities=18% Similarity=0.286 Sum_probs=14.5
Q ss_pred CCcEEEEccCCchHHHH
Q psy3307 48 GRDVMACAQTGSGKTAA 64 (130)
Q Consensus 48 g~~~l~~aptGsGKT~~ 64 (130)
+.-+++.|+.|||||..
T Consensus 5 ~~~I~l~G~~GsGKST~ 21 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTL 21 (193)
T ss_dssp CEEEEEEESTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45689999999999974
No 226
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=87.20 E-value=0.65 Score=35.87 Aligned_cols=28 Identities=25% Similarity=0.414 Sum_probs=19.8
Q ss_pred cCCcEEEEccCCchHHHHHHHHHHHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAAFLVPILNQMY 74 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~~~l~~l~~~~ 74 (130)
.+.++++.+.||||||.+.-.-++..+.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~sLl~ 193 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILSMLY 193 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999865333333333
No 227
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=87.14 E-value=0.95 Score=32.24 Aligned_cols=19 Identities=26% Similarity=0.513 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCchHHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~~ 65 (130)
.|+-+.+.+++|+|||...
T Consensus 104 ~g~vi~lvG~~GsGKTTl~ 122 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTL 122 (296)
T ss_dssp CSSEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3567889999999999754
No 228
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=87.10 E-value=0.48 Score=34.93 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=17.7
Q ss_pred hHHhcCCc--EEEEccCCchHHHHH
Q psy3307 43 PVIISGRD--VMACAQTGSGKTAAF 65 (130)
Q Consensus 43 ~~~~~g~~--~l~~aptGsGKT~~~ 65 (130)
..+++|.| ++.-+.||||||++.
T Consensus 98 ~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 98 SQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHhCCCCEEEEEeCCCCCCccEEe
Confidence 34568864 677889999999874
No 229
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=87.04 E-value=0.45 Score=33.15 Aligned_cols=19 Identities=37% Similarity=0.499 Sum_probs=16.8
Q ss_pred cCCcEEEEccCCchHHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~~ 65 (130)
.|+.+++.+++|+|||...
T Consensus 47 ~g~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp TTCCEEEECSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4999999999999999753
No 230
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=87.03 E-value=1.2 Score=31.05 Aligned_cols=42 Identities=14% Similarity=0.226 Sum_probs=26.4
Q ss_pred CCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHhHHhcCCcEEEEccCCchHHHHH
Q psy3307 11 QGFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 11 ~~f~~l~l~~~i~~~l~~~~~~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~ 65 (130)
..|+++--.+...+.+.+.= .. -....+++.||+|+|||...
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l-~~------------~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGYV-ER------------KNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTTT-TT------------TCCCCEEEESSSSSSHHHHH
T ss_pred CCHHHHhCCHHHHHHHHHHH-hC------------CCCCeEEEECcCCcCHHHHH
Confidence 35666666666666665421 00 01236999999999999653
No 231
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=86.95 E-value=0.32 Score=32.12 Aligned_cols=16 Identities=25% Similarity=0.526 Sum_probs=14.2
Q ss_pred CcEEEEccCCchHHHH
Q psy3307 49 RDVMACAQTGSGKTAA 64 (130)
Q Consensus 49 ~~~l~~aptGsGKT~~ 64 (130)
+-+++.|++|||||..
T Consensus 19 ~~I~l~G~~GsGKSTl 34 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSV 34 (202)
T ss_dssp SCEEEECSTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4799999999999974
No 232
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=86.92 E-value=0.34 Score=34.89 Aligned_cols=16 Identities=31% Similarity=0.464 Sum_probs=14.4
Q ss_pred CcEEEEccCCchHHHH
Q psy3307 49 RDVMACAQTGSGKTAA 64 (130)
Q Consensus 49 ~~~l~~aptGsGKT~~ 64 (130)
..+++.+|+|+|||..
T Consensus 52 ~~~ll~Gp~G~GKTTL 67 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTL 67 (334)
T ss_dssp CCEEEESSTTSSHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 6799999999999974
No 233
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=86.88 E-value=0.32 Score=32.47 Aligned_cols=19 Identities=26% Similarity=0.191 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCchHHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~~ 65 (130)
.|.-+.+.+|+|+|||...
T Consensus 24 ~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp SSEEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 5678899999999999743
No 234
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=86.86 E-value=0.25 Score=35.03 Aligned_cols=17 Identities=35% Similarity=0.431 Sum_probs=14.4
Q ss_pred CCcEEEEccCCchHHHH
Q psy3307 48 GRDVMACAQTGSGKTAA 64 (130)
Q Consensus 48 g~~~l~~aptGsGKT~~ 64 (130)
+.-+++.||+|||||..
T Consensus 33 ~~livl~G~sGsGKSTl 49 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSL 49 (287)
T ss_dssp CEEEEEECCTTSCTHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 35689999999999974
No 235
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=86.85 E-value=0.25 Score=33.45 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=12.4
Q ss_pred hcCCcEEEEccCCchHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~ 64 (130)
..|+-+.+.||+|+|||..
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTV 43 (231)
T ss_dssp ECCCEEEEECSCC----CH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4678889999999999974
No 236
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=86.78 E-value=0.54 Score=31.59 Aligned_cols=16 Identities=31% Similarity=0.405 Sum_probs=13.5
Q ss_pred cEEEEccCCchHHHHH
Q psy3307 50 DVMACAQTGSGKTAAF 65 (130)
Q Consensus 50 ~~l~~aptGsGKT~~~ 65 (130)
-.++.|++|||||+..
T Consensus 7 i~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKM 22 (199)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4578999999999854
No 237
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=86.78 E-value=0.53 Score=34.19 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=18.0
Q ss_pred hHHhcCCc--EEEEccCCchHHHHH
Q psy3307 43 PVIISGRD--VMACAQTGSGKTAAF 65 (130)
Q Consensus 43 ~~~~~g~~--~l~~aptGsGKT~~~ 65 (130)
..+++|.| ++.-++||||||++.
T Consensus 71 ~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 71 KDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCeEEEEEECCCCCCCceEe
Confidence 34568865 677899999999875
No 238
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=86.72 E-value=0.29 Score=32.48 Aligned_cols=18 Identities=28% Similarity=0.152 Sum_probs=14.7
Q ss_pred cCCcEEEEccCCchHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~ 64 (130)
.|.-+.+.||+|||||..
T Consensus 5 ~~~~i~i~G~~GsGKSTl 22 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTL 22 (211)
T ss_dssp CCEEEEEEESTTSSHHHH
T ss_pred CcEEEEEECCCCCCHHHH
Confidence 455678999999999974
No 239
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=86.68 E-value=0.42 Score=32.18 Aligned_cols=19 Identities=21% Similarity=0.205 Sum_probs=16.2
Q ss_pred cCCcEEEEccCCchHHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~~ 65 (130)
.|.-+.+.+|+|+|||...
T Consensus 23 ~G~~~~i~G~~GsGKTtl~ 41 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQIC 41 (243)
T ss_dssp TTSEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCcHHHHH
Confidence 5678899999999999754
No 240
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=86.68 E-value=5.9 Score=28.93 Aligned_cols=19 Identities=37% Similarity=0.326 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCchHHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~~ 65 (130)
.|+-+++.+++|+|||...
T Consensus 62 ~G~ii~I~G~pGsGKTtLa 80 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLT 80 (356)
T ss_dssp TTSEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3478899999999999754
No 241
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=86.65 E-value=0.57 Score=34.54 Aligned_cols=19 Identities=47% Similarity=0.574 Sum_probs=16.1
Q ss_pred cCCc--EEEEccCCchHHHHH
Q psy3307 47 SGRD--VMACAQTGSGKTAAF 65 (130)
Q Consensus 47 ~g~~--~l~~aptGsGKT~~~ 65 (130)
.|.+ ++.-+.||||||++.
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 4776 689999999999875
No 242
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=86.43 E-value=0.41 Score=31.92 Aligned_cols=31 Identities=16% Similarity=0.087 Sum_probs=22.3
Q ss_pred CcHHHHHHHhHHhcCCcEEEEccCCchHHHHH
Q psy3307 34 PTPVQKYAIPVIISGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 34 ~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~ 65 (130)
.++.+... ..+..|.-+++.++.|||||...
T Consensus 12 ~~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 12 LTRSERTE-LRNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp CCHHHHHH-HHTSSCEEEEEECSTTSSHHHHH
T ss_pred cCHHHhhc-ccCCCCCEEEEECCCCCCHHHHH
Confidence 34555544 34557788999999999999743
No 243
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=86.42 E-value=0.36 Score=34.86 Aligned_cols=18 Identities=28% Similarity=0.183 Sum_probs=15.1
Q ss_pred CCcEEEEccCCchHHHHH
Q psy3307 48 GRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 48 g~~~l~~aptGsGKT~~~ 65 (130)
++.+++.||+|+|||...
T Consensus 45 ~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 357999999999999753
No 244
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=86.34 E-value=0.53 Score=34.51 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=17.5
Q ss_pred hHHhcCCc--EEEEccCCchHHHHH
Q psy3307 43 PVIISGRD--VMACAQTGSGKTAAF 65 (130)
Q Consensus 43 ~~~~~g~~--~l~~aptGsGKT~~~ 65 (130)
..+++|.+ ++.-++||||||++.
T Consensus 88 ~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 88 DKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hHhhCCCceEEEEecCCCCCCCeEE
Confidence 34467865 577899999999874
No 245
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=86.28 E-value=0.39 Score=31.53 Aligned_cols=18 Identities=28% Similarity=0.259 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCchHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~ 64 (130)
.|.-+++.|+.|||||..
T Consensus 3 ~~~~I~l~G~~GsGKsT~ 20 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQ 20 (204)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 467899999999999974
No 246
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=86.26 E-value=0.58 Score=32.88 Aligned_cols=16 Identities=31% Similarity=0.463 Sum_probs=14.1
Q ss_pred cEEEEccCCchHHHHH
Q psy3307 50 DVMACAQTGSGKTAAF 65 (130)
Q Consensus 50 ~~l~~aptGsGKT~~~ 65 (130)
.+++.||+|+|||...
T Consensus 48 ~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAA 63 (327)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 6999999999999753
No 247
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=86.25 E-value=0.32 Score=31.52 Aligned_cols=18 Identities=22% Similarity=0.233 Sum_probs=14.7
Q ss_pred CCcEEEEccCCchHHHHH
Q psy3307 48 GRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 48 g~~~l~~aptGsGKT~~~ 65 (130)
+.-+++.+++|||||...
T Consensus 3 ~~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456889999999999753
No 248
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=86.22 E-value=0.39 Score=32.39 Aligned_cols=18 Identities=22% Similarity=0.215 Sum_probs=14.9
Q ss_pred cCCcEEEEccCCchHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~ 64 (130)
.+..+++.|++|||||..
T Consensus 6 ~~~~I~l~G~~GsGKsT~ 23 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTV 23 (227)
T ss_dssp -CCEEEEEECTTSSHHHH
T ss_pred cCcEEEEECCCCCCHHHH
Confidence 456799999999999974
No 249
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=86.19 E-value=0.38 Score=31.33 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=16.1
Q ss_pred hcCCcEEEEccCCchHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~ 64 (130)
..+.-+++.|+.|||||..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~ 25 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQ 25 (196)
T ss_dssp TTSCEEEEEECTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3567899999999999964
No 250
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=86.18 E-value=0.47 Score=30.92 Aligned_cols=19 Identities=21% Similarity=0.263 Sum_probs=16.0
Q ss_pred hcCCcEEEEccCCchHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~ 64 (130)
..+.-+++.|++|||||..
T Consensus 10 ~~~~~I~l~G~~GsGKsT~ 28 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQ 28 (199)
T ss_dssp HHSCEEEEEECTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3567899999999999964
No 251
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=86.14 E-value=0.36 Score=32.35 Aligned_cols=18 Identities=17% Similarity=0.298 Sum_probs=15.2
Q ss_pred cCCcEEEEccCCchHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~ 64 (130)
.+..+++.|+.|||||..
T Consensus 3 ~~~~I~l~G~~GsGKsT~ 20 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQ 20 (220)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 356789999999999964
No 252
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=86.11 E-value=0.57 Score=33.54 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=17.9
Q ss_pred cCCcEEEEccCCchHHHHHHHHHHHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAAFLVPILNQMY 74 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~~~l~~l~~~~ 74 (130)
.|.-+.+.+|+|+|||.. +..+..+.
T Consensus 99 ~g~vi~lvG~nGsGKTTl--l~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTS--LGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHH--HHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHH--HHHHHHHH
Confidence 345678999999999984 33344443
No 253
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=86.09 E-value=0.46 Score=32.29 Aligned_cols=19 Identities=32% Similarity=0.288 Sum_probs=16.5
Q ss_pred hcCCcEEEEccCCchHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~ 64 (130)
..|.-+.+.+|+|+|||..
T Consensus 33 ~~Ge~~~iiG~NGsGKSTL 51 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTL 51 (214)
T ss_dssp ETTCCEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4778889999999999973
No 254
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=86.05 E-value=0.41 Score=32.93 Aligned_cols=19 Identities=32% Similarity=0.414 Sum_probs=16.4
Q ss_pred hcCCcEEEEccCCchHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~ 64 (130)
..|.-+.+.+|+|||||..
T Consensus 29 ~~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4778889999999999973
No 255
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=85.73 E-value=0.69 Score=36.19 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=19.1
Q ss_pred hHHhcCCcEEEEccCCchHHHHH
Q psy3307 43 PVIISGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 43 ~~~~~g~~~l~~aptGsGKT~~~ 65 (130)
..+..|..+++.+|+|+|||...
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHHH
T ss_pred ccccCCCEEEEEeCCCCCHHHHH
Confidence 34568899999999999999743
No 256
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=85.70 E-value=0.38 Score=34.95 Aligned_cols=16 Identities=25% Similarity=0.318 Sum_probs=13.7
Q ss_pred cEEEEccCCchHHHHH
Q psy3307 50 DVMACAQTGSGKTAAF 65 (130)
Q Consensus 50 ~~l~~aptGsGKT~~~ 65 (130)
.+++.+|||||||...
T Consensus 7 ~i~i~GptGsGKTtla 22 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5889999999999743
No 257
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=85.67 E-value=0.65 Score=33.98 Aligned_cols=23 Identities=43% Similarity=0.596 Sum_probs=17.4
Q ss_pred hHHhcCCc--EEEEccCCchHHHHH
Q psy3307 43 PVIISGRD--VMACAQTGSGKTAAF 65 (130)
Q Consensus 43 ~~~~~g~~--~l~~aptGsGKT~~~ 65 (130)
..+++|.| ++.-++||||||++.
T Consensus 77 ~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 77 EAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhhcCeeEEEecccCCCceEee
Confidence 34568865 577889999999874
No 258
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=85.66 E-value=0.61 Score=34.33 Aligned_cols=22 Identities=41% Similarity=0.658 Sum_probs=17.2
Q ss_pred HHhcCCc--EEEEccCCchHHHHH
Q psy3307 44 VIISGRD--VMACAQTGSGKTAAF 65 (130)
Q Consensus 44 ~~~~g~~--~l~~aptGsGKT~~~ 65 (130)
.+++|.+ ++.-+.||||||++.
T Consensus 75 ~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 75 DILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHhCCCcceEEEECCCCCCcceEe
Confidence 4567864 577899999999875
No 259
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=85.61 E-value=0.64 Score=34.46 Aligned_cols=22 Identities=36% Similarity=0.658 Sum_probs=17.0
Q ss_pred HHhcCCc--EEEEccCCchHHHHH
Q psy3307 44 VIISGRD--VMACAQTGSGKTAAF 65 (130)
Q Consensus 44 ~~~~g~~--~l~~aptGsGKT~~~ 65 (130)
.+++|.| ++.-+.||||||++.
T Consensus 96 ~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 96 SVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHhCCCeeeEEeecCCCCCCCEeE
Confidence 4568864 567889999999874
No 260
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=85.61 E-value=2.3 Score=32.25 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=14.3
Q ss_pred CcEEEEccCCchHHHHH
Q psy3307 49 RDVMACAQTGSGKTAAF 65 (130)
Q Consensus 49 ~~~l~~aptGsGKT~~~ 65 (130)
.-+++.+++|+|||...
T Consensus 101 ~vIlivG~~G~GKTTt~ 117 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTV 117 (443)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECcCCCCHHHHH
Confidence 46789999999999864
No 261
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=85.57 E-value=0.66 Score=34.28 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=17.4
Q ss_pred HHhcCCc--EEEEccCCchHHHHH
Q psy3307 44 VIISGRD--VMACAQTGSGKTAAF 65 (130)
Q Consensus 44 ~~~~g~~--~l~~aptGsGKT~~~ 65 (130)
.+++|.| ++.-+.||||||++.
T Consensus 79 ~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 79 DVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHhCCCceEEEeecCCCCCCceEE
Confidence 4568864 577899999999885
No 262
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=85.57 E-value=0.49 Score=33.01 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=18.5
Q ss_pred HHhcCCcEEEEccCCchHHHHH
Q psy3307 44 VIISGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 44 ~~~~g~~~l~~aptGsGKT~~~ 65 (130)
-+..|.-+++.+|+|+|||...
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~ 47 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLA 47 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHH
Confidence 3557889999999999999754
No 263
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.52 E-value=0.57 Score=33.63 Aligned_cols=20 Identities=25% Similarity=0.524 Sum_probs=15.5
Q ss_pred hcCC--cEEEEccCCchHHHHH
Q psy3307 46 ISGR--DVMACAQTGSGKTAAF 65 (130)
Q Consensus 46 ~~g~--~~l~~aptGsGKT~~~ 65 (130)
..|+ ++++.||+|+|||...
T Consensus 42 ~~g~~~~~ll~Gp~G~GKTtla 63 (340)
T 1sxj_C 42 DEGKLPHLLFYGPPGTGKTSTI 63 (340)
T ss_dssp HTTCCCCEEEECSSSSSHHHHH
T ss_pred hcCCCceEEEECCCCCCHHHHH
Confidence 3454 3899999999999754
No 264
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=85.50 E-value=0.38 Score=31.10 Aligned_cols=18 Identities=33% Similarity=0.483 Sum_probs=15.3
Q ss_pred cCCcEEEEccCCchHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~ 64 (130)
.|..+.+.++.|||||..
T Consensus 4 ~g~~i~l~G~~GsGKST~ 21 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTV 21 (179)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 466789999999999974
No 265
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=85.49 E-value=0.67 Score=34.04 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=17.2
Q ss_pred HHhcCC--cEEEEccCCchHHHHH
Q psy3307 44 VIISGR--DVMACAQTGSGKTAAF 65 (130)
Q Consensus 44 ~~~~g~--~~l~~aptGsGKT~~~ 65 (130)
.+++|. .++.-+.||||||+..
T Consensus 84 ~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 84 AVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHhCCCceeEEeecCCCCCCCEEe
Confidence 346786 4577899999999875
No 266
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=85.47 E-value=0.46 Score=32.48 Aligned_cols=19 Identities=32% Similarity=0.457 Sum_probs=16.4
Q ss_pred hcCCcEEEEccCCchHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~ 64 (130)
..|.-+.+.+|+|+|||..
T Consensus 32 ~~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp ETTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3778889999999999973
No 267
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=85.45 E-value=0.66 Score=34.72 Aligned_cols=25 Identities=36% Similarity=0.567 Sum_probs=19.2
Q ss_pred HHhHHhcCCc--EEEEccCCchHHHHH
Q psy3307 41 AIPVIISGRD--VMACAQTGSGKTAAF 65 (130)
Q Consensus 41 ~i~~~~~g~~--~l~~aptGsGKT~~~ 65 (130)
.+..+++|.| ++.-+.||||||++.
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 3455678875 477889999999875
No 268
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=85.42 E-value=0.45 Score=32.43 Aligned_cols=19 Identities=32% Similarity=0.386 Sum_probs=16.1
Q ss_pred hcCCcEEEEccCCchHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~ 64 (130)
..|.-+.+.+|+|+|||..
T Consensus 28 ~~Ge~~~iiG~nGsGKSTL 46 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTL 46 (224)
T ss_dssp ETTCEEEEEECTTSCHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3677888999999999973
No 269
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=85.40 E-value=0.47 Score=32.44 Aligned_cols=18 Identities=22% Similarity=0.209 Sum_probs=15.2
Q ss_pred cCCcEEEEccCCchHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~ 64 (130)
.+.-+.+.||+|||||..
T Consensus 26 ~~~~i~l~G~~GsGKSTl 43 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTV 43 (246)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 356899999999999974
No 270
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=85.37 E-value=0.45 Score=33.65 Aligned_cols=19 Identities=21% Similarity=0.267 Sum_probs=16.3
Q ss_pred hcCCcEEEEccCCchHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~ 64 (130)
..|.-+.+.+|+|||||..
T Consensus 32 ~~Ge~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTL 50 (275)
T ss_dssp ETTSEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3678889999999999973
No 271
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=85.31 E-value=0.7 Score=33.65 Aligned_cols=25 Identities=36% Similarity=0.565 Sum_probs=19.3
Q ss_pred HHhHHhcCCc--EEEEccCCchHHHHH
Q psy3307 41 AIPVIISGRD--VMACAQTGSGKTAAF 65 (130)
Q Consensus 41 ~i~~~~~g~~--~l~~aptGsGKT~~~ 65 (130)
.+..+++|.| ++.-++||||||++.
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 3455678875 577899999999875
No 272
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=85.31 E-value=1.3 Score=32.60 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=18.4
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHH
Q psy3307 48 GRDVMACAQTGSGKTAAFLVPILNQMY 74 (130)
Q Consensus 48 g~~~l~~aptGsGKT~~~~l~~l~~~~ 74 (130)
|+-+++.+++|+|||... +.++....
T Consensus 74 G~li~I~G~pGsGKTtla-l~la~~~~ 99 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLA-LAIVAQAQ 99 (366)
T ss_dssp TSEEEEEESTTSSHHHHH-HHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHH-HHHHHHHH
Confidence 467899999999999643 44444433
No 273
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=85.31 E-value=0.69 Score=34.17 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=17.6
Q ss_pred hHHhcCCc--EEEEccCCchHHHHH
Q psy3307 43 PVIISGRD--VMACAQTGSGKTAAF 65 (130)
Q Consensus 43 ~~~~~g~~--~l~~aptGsGKT~~~ 65 (130)
..+++|.+ ++.-+.||||||++.
T Consensus 83 ~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 83 QHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhcCCeeEEEEeCCCCCCCceEe
Confidence 34568864 577899999999875
No 274
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=85.31 E-value=0.44 Score=31.94 Aligned_cols=17 Identities=29% Similarity=0.313 Sum_probs=14.7
Q ss_pred CCcEEEEccCCchHHHH
Q psy3307 48 GRDVMACAQTGSGKTAA 64 (130)
Q Consensus 48 g~~~l~~aptGsGKT~~ 64 (130)
+..+++.|+.|||||..
T Consensus 5 ~~~I~l~G~~GsGKsT~ 21 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQ 21 (222)
T ss_dssp SCCEEEEESTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 46789999999999974
No 275
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=85.30 E-value=0.68 Score=33.99 Aligned_cols=23 Identities=39% Similarity=0.491 Sum_probs=17.7
Q ss_pred hHHhcCC--cEEEEccCCchHHHHH
Q psy3307 43 PVIISGR--DVMACAQTGSGKTAAF 65 (130)
Q Consensus 43 ~~~~~g~--~~l~~aptGsGKT~~~ 65 (130)
..+++|. .++.-++||||||+..
T Consensus 71 ~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 71 DSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHcCCccceeeecCCCCCCCeEE
Confidence 3456886 4577899999999885
No 276
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=85.29 E-value=0.43 Score=36.95 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=16.2
Q ss_pred cCCcEEEEccCCchHHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~~ 65 (130)
.|..+++.+|+|+|||...
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4778999999999999743
No 277
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=85.29 E-value=1.2 Score=32.82 Aligned_cols=33 Identities=30% Similarity=0.335 Sum_probs=22.1
Q ss_pred HHhHHhc------CCcEEEEccCCchHHHHHHHHHHHHHH
Q psy3307 41 AIPVIIS------GRDVMACAQTGSGKTAAFLVPILNQMY 74 (130)
Q Consensus 41 ~i~~~~~------g~~~l~~aptGsGKT~~~~l~~l~~~~ 74 (130)
.++.++. |.-+++.+|+|+|||.. ++.++..+.
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTL-al~la~~~~ 86 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTL-ALHAIAEAQ 86 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHH-HHHHHHHHH
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHH-HHHHHHHHH
Confidence 3455565 46789999999999964 344444433
No 278
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=85.28 E-value=0.43 Score=33.57 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=17.3
Q ss_pred HhcCCcEEEEccCCchHHHHH
Q psy3307 45 IISGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 45 ~~~g~~~l~~aptGsGKT~~~ 65 (130)
+..|.-+++.||+|+|||...
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~ 52 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFV 52 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHH
Confidence 346788999999999999754
No 279
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=85.28 E-value=0.75 Score=33.74 Aligned_cols=25 Identities=36% Similarity=0.569 Sum_probs=19.2
Q ss_pred HHhHHhcCCc--EEEEccCCchHHHHH
Q psy3307 41 AIPVIISGRD--VMACAQTGSGKTAAF 65 (130)
Q Consensus 41 ~i~~~~~g~~--~l~~aptGsGKT~~~ 65 (130)
.+..+++|.| ++.-+.||||||++.
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 4455678875 567899999999875
No 280
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=85.25 E-value=0.42 Score=35.00 Aligned_cols=16 Identities=31% Similarity=0.287 Sum_probs=13.6
Q ss_pred cEEEEccCCchHHHHH
Q psy3307 50 DVMACAQTGSGKTAAF 65 (130)
Q Consensus 50 ~~l~~aptGsGKT~~~ 65 (130)
-+++.||||||||...
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 5789999999999643
No 281
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=85.23 E-value=0.47 Score=33.01 Aligned_cols=19 Identities=26% Similarity=0.386 Sum_probs=16.3
Q ss_pred hcCCcEEEEccCCchHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~ 64 (130)
..|.-+.+.+|+|+|||..
T Consensus 31 ~~Ge~~~liG~nGsGKSTL 49 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTL 49 (257)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred eCCCEEEEECCCCCCHHHH
Confidence 3778889999999999973
No 282
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=85.19 E-value=0.65 Score=33.43 Aligned_cols=31 Identities=23% Similarity=0.371 Sum_probs=21.9
Q ss_pred cHHHHHHHhHHh----cCC---cEEEEccCCchHHHHH
Q psy3307 35 TPVQKYAIPVII----SGR---DVMACAQTGSGKTAAF 65 (130)
Q Consensus 35 t~~Q~~~i~~~~----~g~---~~l~~aptGsGKT~~~ 65 (130)
.|+|..++..+. +|+ .+++.||.|+|||...
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a 41 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALI 41 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHH
T ss_pred CCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHH
Confidence 466666665443 444 4899999999999754
No 283
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=85.17 E-value=0.6 Score=34.55 Aligned_cols=25 Identities=36% Similarity=0.577 Sum_probs=18.9
Q ss_pred HHhHHhcCCc--EEEEccCCchHHHHH
Q psy3307 41 AIPVIISGRD--VMACAQTGSGKTAAF 65 (130)
Q Consensus 41 ~i~~~~~g~~--~l~~aptGsGKT~~~ 65 (130)
.+..+++|.| ++.-+.||||||++.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 3445678875 567889999999875
No 284
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=85.17 E-value=0.38 Score=31.10 Aligned_cols=15 Identities=20% Similarity=0.253 Sum_probs=12.9
Q ss_pred cEEEEccCCchHHHH
Q psy3307 50 DVMACAQTGSGKTAA 64 (130)
Q Consensus 50 ~~l~~aptGsGKT~~ 64 (130)
-+++.|+.|||||..
T Consensus 3 ~I~i~G~~GsGKsT~ 17 (194)
T 1nks_A 3 IGIVTGIPGVGKSTV 17 (194)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999974
No 285
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=85.11 E-value=0.52 Score=30.32 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=13.4
Q ss_pred cEEEEccCCchHHHH
Q psy3307 50 DVMACAQTGSGKTAA 64 (130)
Q Consensus 50 ~~l~~aptGsGKT~~ 64 (130)
.+++.+++|||||..
T Consensus 6 ~i~i~G~~GsGKsTl 20 (175)
T 1via_A 6 NIVFIGFMGSGKSTL 20 (175)
T ss_dssp CEEEECCTTSCHHHH
T ss_pred EEEEEcCCCCCHHHH
Confidence 689999999999974
No 286
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=85.11 E-value=0.42 Score=36.12 Aligned_cols=17 Identities=24% Similarity=0.411 Sum_probs=14.5
Q ss_pred CcEEEEccCCchHHHHH
Q psy3307 49 RDVMACAQTGSGKTAAF 65 (130)
Q Consensus 49 ~~~l~~aptGsGKT~~~ 65 (130)
.++++.||+|+|||...
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 36999999999999743
No 287
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=85.09 E-value=0.41 Score=36.59 Aligned_cols=55 Identities=16% Similarity=0.250 Sum_probs=32.7
Q ss_pred cccCCCcCCCCCHHHHHHHHHCC--CCCCcHHHHHHHhHHhcCCcEEEEccCCchHHHHH
Q psy3307 8 LKKQGFDDIQMTEIITNNIALAR--YDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 8 ~~~~~f~~l~l~~~i~~~l~~~~--~~~~t~~Q~~~i~~~~~g~~~l~~aptGsGKT~~~ 65 (130)
.+..+|+|+.-.++..+.+++.- +..+..++... +.-.+.+++.+|+|+|||+..
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g---~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIG---ARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTT---CCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcC---CCCCCeEEEECCCCCCHHHHH
Confidence 35678999987777777765421 11111111100 012256999999999999753
No 288
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=85.08 E-value=0.7 Score=34.04 Aligned_cols=23 Identities=39% Similarity=0.588 Sum_probs=17.6
Q ss_pred hHHhcCC--cEEEEccCCchHHHHH
Q psy3307 43 PVIISGR--DVMACAQTGSGKTAAF 65 (130)
Q Consensus 43 ~~~~~g~--~~l~~aptGsGKT~~~ 65 (130)
..+++|. .++.-+.||||||++.
T Consensus 82 ~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 82 DEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred HHHhCCCceEEEEeCCCCCCCceEE
Confidence 3456886 4577899999999864
No 289
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=85.05 E-value=0.71 Score=33.96 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=18.3
Q ss_pred HhHHhcCCc--EEEEccCCchHHHHH
Q psy3307 42 IPVIISGRD--VMACAQTGSGKTAAF 65 (130)
Q Consensus 42 i~~~~~g~~--~l~~aptGsGKT~~~ 65 (130)
+..+++|.| ++.-+.||||||.+.
T Consensus 85 v~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 85 LQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHhCCceeEEEeeCCCCCCCceEE
Confidence 344568875 477889999999885
No 290
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=85.05 E-value=0.48 Score=33.27 Aligned_cols=19 Identities=32% Similarity=0.447 Sum_probs=16.3
Q ss_pred hcCCcEEEEccCCchHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~ 64 (130)
..|.-+.+.+|+|+|||..
T Consensus 35 ~~Ge~~~liG~nGsGKSTL 53 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTL 53 (266)
T ss_dssp ETTCEEEEECCTTSCHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3678889999999999973
No 291
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=85.03 E-value=0.49 Score=32.56 Aligned_cols=19 Identities=32% Similarity=0.422 Sum_probs=16.3
Q ss_pred hcCCcEEEEccCCchHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~ 64 (130)
..|.-+.+.+|+|+|||..
T Consensus 30 ~~Ge~~~l~G~nGsGKSTL 48 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTT 48 (240)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3678889999999999973
No 292
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=84.98 E-value=0.69 Score=33.90 Aligned_cols=25 Identities=36% Similarity=0.567 Sum_probs=18.9
Q ss_pred HHhHHhcCCc--EEEEccCCchHHHHH
Q psy3307 41 AIPVIISGRD--VMACAQTGSGKTAAF 65 (130)
Q Consensus 41 ~i~~~~~g~~--~l~~aptGsGKT~~~ 65 (130)
.+..+++|.| ++.-+.||||||+..
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 3445678875 577899999999875
No 293
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=84.98 E-value=0.71 Score=34.00 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=17.5
Q ss_pred hHHhcCCc--EEEEccCCchHHHHH
Q psy3307 43 PVIISGRD--VMACAQTGSGKTAAF 65 (130)
Q Consensus 43 ~~~~~g~~--~l~~aptGsGKT~~~ 65 (130)
..+++|.| ++.-++||||||++.
T Consensus 97 ~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 97 SQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHhCCCceEEEEECCCCCCCceEe
Confidence 34568875 467789999999874
No 294
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=84.96 E-value=4.7 Score=36.33 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=20.1
Q ss_pred HhHHhc------CCcEEEEccCCchHHHHHH
Q psy3307 42 IPVIIS------GRDVMACAQTGSGKTAAFL 66 (130)
Q Consensus 42 i~~~~~------g~~~l~~aptGsGKT~~~~ 66 (130)
++.++. |+.+++.+|+|+|||....
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ 1445 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTL 1445 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHH
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHH
Confidence 555665 6899999999999997653
No 295
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=84.92 E-value=0.47 Score=30.66 Aligned_cols=22 Identities=18% Similarity=0.120 Sum_probs=15.7
Q ss_pred cEEEEccCCchHHHHHHHHHHHHH
Q psy3307 50 DVMACAQTGSGKTAAFLVPILNQM 73 (130)
Q Consensus 50 ~~l~~aptGsGKT~~~~l~~l~~~ 73 (130)
-.++.+|+|+|||.. +-++..+
T Consensus 28 ~~~i~G~NGsGKStl--l~ai~~~ 49 (182)
T 3kta_A 28 FTAIVGANGSGKSNI--GDAILFV 49 (182)
T ss_dssp EEEEEECTTSSHHHH--HHHHHHH
T ss_pred cEEEECCCCCCHHHH--HHHHHHH
Confidence 567899999999974 3444443
No 296
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=84.90 E-value=1.1 Score=32.47 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=18.9
Q ss_pred cCCcEEEEccCCchHHHHHHHHHHHHHHh
Q psy3307 47 SGRDVMACAQTGSGKTAAFLVPILNQMYE 75 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~~~l~~l~~~~~ 75 (130)
.|.-+.+.+|+|+|||.. +..+..+..
T Consensus 128 ~g~vi~lvG~nGaGKTTl--l~~Lag~l~ 154 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTT--IAKLANWLK 154 (328)
T ss_dssp SSEEEEEECCTTSSHHHH--HHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHH--HHHHHHHHH
Confidence 356789999999999974 344444443
No 297
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=84.89 E-value=0.56 Score=30.70 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=16.0
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHh
Q psy3307 50 DVMACAQTGSGKTAAFLVPILNQMYE 75 (130)
Q Consensus 50 ~~l~~aptGsGKT~~~~l~~l~~~~~ 75 (130)
-+.+.+++|||||.. +-.|..++.
T Consensus 4 ~v~IvG~SGsGKSTL--~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTL--ITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHH--HHHHHHHHH
T ss_pred EEEEECCCCCCHHHH--HHHHHHHhh
Confidence 466889999999974 334444443
No 298
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=84.88 E-value=0.42 Score=31.09 Aligned_cols=19 Identities=37% Similarity=0.347 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCchHHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~~ 65 (130)
.|.-+++.++.|||||...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4667899999999999753
No 299
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=84.87 E-value=0.9 Score=32.57 Aligned_cols=18 Identities=28% Similarity=0.180 Sum_probs=15.2
Q ss_pred CCcEEEEccCCchHHHHH
Q psy3307 48 GRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 48 g~~~l~~aptGsGKT~~~ 65 (130)
|.-+++.+++|+|||...
T Consensus 107 G~i~~i~G~~GsGKT~la 124 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLC 124 (324)
T ss_dssp TSEEEEEESTTSSHHHHH
T ss_pred CcEEEEECCCCCCHhHHH
Confidence 467899999999999754
No 300
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=84.86 E-value=0.82 Score=34.35 Aligned_cols=23 Identities=43% Similarity=0.614 Sum_probs=17.6
Q ss_pred hHHhcCC--cEEEEccCCchHHHHH
Q psy3307 43 PVIISGR--DVMACAQTGSGKTAAF 65 (130)
Q Consensus 43 ~~~~~g~--~~l~~aptGsGKT~~~ 65 (130)
..+++|. .++.-|.||||||++.
T Consensus 148 ~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 148 QTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHhcCCceeEEeecCCCCCCCeEe
Confidence 3456786 4577889999999874
No 301
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=84.86 E-value=0.64 Score=34.93 Aligned_cols=25 Identities=40% Similarity=0.594 Sum_probs=19.1
Q ss_pred HHhHHhcCCc--EEEEccCCchHHHHH
Q psy3307 41 AIPVIISGRD--VMACAQTGSGKTAAF 65 (130)
Q Consensus 41 ~i~~~~~g~~--~l~~aptGsGKT~~~ 65 (130)
.+..+++|.| ++.-|.||||||++.
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 4455678875 577789999999874
No 302
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=84.85 E-value=0.51 Score=32.71 Aligned_cols=19 Identities=26% Similarity=0.422 Sum_probs=16.4
Q ss_pred hcCCcEEEEccCCchHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~ 64 (130)
..|.-+.+.+|+|+|||..
T Consensus 33 ~~Ge~~~i~G~nGsGKSTL 51 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTL 51 (247)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3778889999999999973
No 303
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=84.83 E-value=0.45 Score=34.93 Aligned_cols=16 Identities=25% Similarity=0.451 Sum_probs=13.3
Q ss_pred cEEEEccCCchHHHHH
Q psy3307 50 DVMACAQTGSGKTAAF 65 (130)
Q Consensus 50 ~~l~~aptGsGKT~~~ 65 (130)
-.++.+|||+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5678999999999743
No 304
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=84.81 E-value=0.48 Score=31.51 Aligned_cols=15 Identities=20% Similarity=0.459 Sum_probs=13.0
Q ss_pred cEEEEccCCchHHHH
Q psy3307 50 DVMACAQTGSGKTAA 64 (130)
Q Consensus 50 ~~l~~aptGsGKT~~ 64 (130)
.+++.|+.|||||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999975
No 305
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=84.80 E-value=0.7 Score=33.98 Aligned_cols=22 Identities=36% Similarity=0.652 Sum_probs=17.1
Q ss_pred HHhcCCc--EEEEccCCchHHHHH
Q psy3307 44 VIISGRD--VMACAQTGSGKTAAF 65 (130)
Q Consensus 44 ~~~~g~~--~l~~aptGsGKT~~~ 65 (130)
.+++|.| ++.-++||||||++.
T Consensus 100 ~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 100 SFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHhCCCceEEEEeCCCCCCceeee
Confidence 4457864 577899999999875
No 306
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=84.78 E-value=0.45 Score=36.08 Aligned_cols=19 Identities=26% Similarity=0.351 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCchHHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~~ 65 (130)
...++++.||+|+|||...
T Consensus 200 ~~~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp SSCEEEEESCTTTTTHHHH
T ss_pred CCCCeEEECCCCCCHHHHH
Confidence 3468999999999999753
No 307
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=84.77 E-value=0.59 Score=30.20 Aligned_cols=16 Identities=25% Similarity=0.397 Sum_probs=13.8
Q ss_pred CcEEEEccCCchHHHH
Q psy3307 49 RDVMACAQTGSGKTAA 64 (130)
Q Consensus 49 ~~~l~~aptGsGKT~~ 64 (130)
..+++.+++|||||..
T Consensus 3 ~~I~l~G~~GsGKsT~ 18 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTI 18 (184)
T ss_dssp CSEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4588999999999975
No 308
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=84.69 E-value=0.52 Score=35.44 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=14.9
Q ss_pred CCcEEEEccCCchHHHH
Q psy3307 48 GRDVMACAQTGSGKTAA 64 (130)
Q Consensus 48 g~~~l~~aptGsGKT~~ 64 (130)
+..+++.||+|+|||..
T Consensus 130 ~~~lll~Gp~G~GKTtL 146 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHL 146 (440)
T ss_dssp SCCEEEECSSSSSHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 46899999999999974
No 309
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.67 E-value=0.47 Score=36.37 Aligned_cols=17 Identities=41% Similarity=0.497 Sum_probs=15.0
Q ss_pred CcEEEEccCCchHHHHH
Q psy3307 49 RDVMACAQTGSGKTAAF 65 (130)
Q Consensus 49 ~~~l~~aptGsGKT~~~ 65 (130)
+.+++.||+|+|||...
T Consensus 78 ~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 68999999999999753
No 310
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=84.66 E-value=0.9 Score=36.29 Aligned_cols=60 Identities=20% Similarity=0.205 Sum_probs=41.4
Q ss_pred CCcHHHHHHHhHHhc--CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEcCcHHHHHH
Q psy3307 33 KPTPVQKYAIPVIIS--GRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQ 110 (130)
Q Consensus 33 ~~t~~Q~~~i~~~~~--g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~q 110 (130)
.+|.-|.+++..+.. ..-.++.|+.|.|||.+.-+.+-. .. ..++|.+|+.+-+..
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~--~~--------------------~~~~vtAP~~~a~~~ 232 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISR--IA--------------------GRAIVTAPAKASTDV 232 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHH--SS--------------------SCEEEECSSCCSCHH
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHH--HH--------------------hCcEEECCCHHHHHH
Confidence 578999999988775 234689999999999654333321 11 126888899887776
Q ss_pred HHHH
Q psy3307 111 IYDE 114 (130)
Q Consensus 111 ~~~~ 114 (130)
+.+.
T Consensus 233 l~~~ 236 (671)
T 2zpa_A 233 LAQF 236 (671)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 311
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=84.66 E-value=1.8 Score=31.03 Aligned_cols=16 Identities=25% Similarity=0.322 Sum_probs=13.7
Q ss_pred cEEEEccCCchHHHHH
Q psy3307 50 DVMACAQTGSGKTAAF 65 (130)
Q Consensus 50 ~~l~~aptGsGKT~~~ 65 (130)
.+++.||+|+|||...
T Consensus 40 ~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIA 55 (373)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4799999999999753
No 312
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=84.65 E-value=0.52 Score=32.91 Aligned_cols=19 Identities=37% Similarity=0.496 Sum_probs=16.6
Q ss_pred hcCCcEEEEccCCchHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~ 64 (130)
..|.-+.+.+|+|+|||..
T Consensus 44 ~~Ge~~~i~G~nGsGKSTL 62 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTI 62 (260)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3778899999999999973
No 313
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=84.60 E-value=0.52 Score=32.93 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=16.2
Q ss_pred hcCCcEEEEccCCchHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~ 64 (130)
..|.-+.+.+|+|+|||..
T Consensus 30 ~~Ge~~~liG~nGsGKSTL 48 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTF 48 (262)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3677889999999999973
No 314
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=84.59 E-value=0.41 Score=31.49 Aligned_cols=18 Identities=28% Similarity=0.324 Sum_probs=15.1
Q ss_pred cCCcEEEEccCCchHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~ 64 (130)
.|.-+++.|+.|||||..
T Consensus 3 ~~~~I~i~G~~GsGKsT~ 20 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQ 20 (213)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCeEEEEEcCCCCCHHHH
Confidence 356789999999999974
No 315
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=84.59 E-value=0.46 Score=30.20 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=15.7
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHH
Q psy3307 50 DVMACAQTGSGKTAAFLVPILNQMY 74 (130)
Q Consensus 50 ~~l~~aptGsGKT~~~~l~~l~~~~ 74 (130)
-.++.+|+|+|||.. +-.+....
T Consensus 25 ~~~I~G~NGsGKSti--l~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL--LDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHH
T ss_pred eEEEECCCCCCHHHH--HHHHHHHH
Confidence 457899999999974 34444333
No 316
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=84.53 E-value=1.1 Score=32.88 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=17.9
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHHh
Q psy3307 48 GRDVMACAQTGSGKTAAFLVPILNQMYE 75 (130)
Q Consensus 48 g~~~l~~aptGsGKT~~~~l~~l~~~~~ 75 (130)
|.-+.+.+|+|+|||... ..|..++.
T Consensus 157 g~vi~lvG~nGsGKTTll--~~Lag~l~ 182 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSL--GKLAHRLK 182 (359)
T ss_dssp SEEEEEECCTTSCHHHHH--HHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHH--HHHHhhcc
Confidence 456789999999999843 33444443
No 317
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=84.52 E-value=0.5 Score=31.18 Aligned_cols=18 Identities=22% Similarity=0.300 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCchHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~ 64 (130)
.|.-+++.|+.|||||..
T Consensus 9 ~~~~I~l~G~~GsGKST~ 26 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQ 26 (212)
T ss_dssp CSCEEEEEESTTSSHHHH
T ss_pred cCCEEEEEcCCCCCHHHH
Confidence 567899999999999974
No 318
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=84.42 E-value=0.73 Score=34.12 Aligned_cols=22 Identities=41% Similarity=0.702 Sum_probs=17.1
Q ss_pred HHhcCCc--EEEEccCCchHHHHH
Q psy3307 44 VIISGRD--VMACAQTGSGKTAAF 65 (130)
Q Consensus 44 ~~~~g~~--~l~~aptGsGKT~~~ 65 (130)
.+++|.+ ++.-+.||||||++.
T Consensus 95 ~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 95 EVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHhCCceEEEEeecCCCCCcceec
Confidence 4567864 577899999999874
No 319
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=84.40 E-value=0.29 Score=32.48 Aligned_cols=21 Identities=24% Similarity=-0.023 Sum_probs=16.6
Q ss_pred HHhcCCcEEEEccCCchHHHH
Q psy3307 44 VIISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 44 ~~~~g~~~l~~aptGsGKT~~ 64 (130)
.+..+.-+.+.+++|||||..
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl 37 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTL 37 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHH
Confidence 344566788999999999974
No 320
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=84.38 E-value=0.57 Score=30.83 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=14.5
Q ss_pred CCcEEEEccCCchHHHH
Q psy3307 48 GRDVMACAQTGSGKTAA 64 (130)
Q Consensus 48 g~~~l~~aptGsGKT~~ 64 (130)
+..+++.+++|||||..
T Consensus 20 ~~~I~l~G~~GsGKST~ 36 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQ 36 (201)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45789999999999964
No 321
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=84.38 E-value=0.46 Score=30.65 Aligned_cols=27 Identities=26% Similarity=0.129 Sum_probs=19.4
Q ss_pred hcCCcEEEEccCCchHHHHHHHHHHHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAAFLVPILNQMY 74 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~~~l~~l~~~~ 74 (130)
..|.-+.+.+|+|+|||. ++-++..+.
T Consensus 31 ~~Ge~v~L~G~nGaGKTT--Llr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTT--LTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHH--HHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHH--HHHHHHHhC
Confidence 467778899999999997 344444443
No 322
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=84.36 E-value=0.58 Score=35.52 Aligned_cols=18 Identities=28% Similarity=0.464 Sum_probs=15.4
Q ss_pred CCcEEEEccCCchHHHHH
Q psy3307 48 GRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 48 g~~~l~~aptGsGKT~~~ 65 (130)
.+++++.+|+|+|||...
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 468999999999999743
No 323
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=84.32 E-value=0.55 Score=32.63 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=16.3
Q ss_pred hcCCcEEEEccCCchHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~ 64 (130)
..|.-+.+.+|+|+|||..
T Consensus 24 ~~Ge~~~liG~NGsGKSTL 42 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTL 42 (249)
T ss_dssp ETTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3678889999999999974
No 324
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=84.24 E-value=0.53 Score=31.06 Aligned_cols=18 Identities=17% Similarity=0.244 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCchHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~ 64 (130)
.|.-+++.|+.|||||..
T Consensus 8 ~~~~I~l~G~~GsGKsT~ 25 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQ 25 (215)
T ss_dssp CCCEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 467899999999999974
No 325
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=84.22 E-value=0.53 Score=31.35 Aligned_cols=16 Identities=19% Similarity=0.295 Sum_probs=13.4
Q ss_pred cEEEEccCCchHHHHH
Q psy3307 50 DVMACAQTGSGKTAAF 65 (130)
Q Consensus 50 ~~l~~aptGsGKT~~~ 65 (130)
.+++.|++|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999753
No 326
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=84.18 E-value=0.57 Score=32.47 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=16.4
Q ss_pred hcCCcEEEEccCCchHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~ 64 (130)
..|.-+.+.+|+|+|||..
T Consensus 27 ~~Ge~~~l~G~nGsGKSTL 45 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTL 45 (250)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3678889999999999974
No 327
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=84.16 E-value=0.56 Score=32.82 Aligned_cols=19 Identities=32% Similarity=0.520 Sum_probs=16.3
Q ss_pred hcCCcEEEEccCCchHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~ 64 (130)
..|.-+.+.+|+|+|||..
T Consensus 31 ~~Ge~~~liG~nGsGKSTL 49 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTL 49 (266)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3678889999999999973
No 328
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=84.15 E-value=0.51 Score=43.22 Aligned_cols=20 Identities=40% Similarity=0.697 Sum_probs=17.6
Q ss_pred HhcCCcEEEEccCCchHHHH
Q psy3307 45 IISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 45 ~~~g~~~l~~aptGsGKT~~ 64 (130)
+..++.+++.||+|+|||..
T Consensus 1264 l~~~~~vLL~GPpGtGKT~l 1283 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMI 1283 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHH
T ss_pred HHCCCeEEEECCCCCCHHHH
Confidence 44789999999999999974
No 329
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=84.12 E-value=0.83 Score=34.04 Aligned_cols=23 Identities=43% Similarity=0.614 Sum_probs=17.6
Q ss_pred hHHhcCC--cEEEEccCCchHHHHH
Q psy3307 43 PVIISGR--DVMACAQTGSGKTAAF 65 (130)
Q Consensus 43 ~~~~~g~--~~l~~aptGsGKT~~~ 65 (130)
..+++|. .++.-+.||||||++.
T Consensus 128 ~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 128 QTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHhcCCceEEEEecCCCCCCCeEe
Confidence 3456786 4677899999999874
No 330
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=84.07 E-value=0.57 Score=32.59 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=16.2
Q ss_pred hcCCcEEEEccCCchHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~ 64 (130)
..|.-+.+.+|+|+|||..
T Consensus 29 ~~Ge~~~l~G~nGsGKSTL 47 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTL 47 (253)
T ss_dssp ETTCEEEEECCSSSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3677888999999999973
No 331
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=84.00 E-value=0.58 Score=32.82 Aligned_cols=19 Identities=26% Similarity=0.321 Sum_probs=16.3
Q ss_pred hcCCcEEEEccCCchHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~ 64 (130)
..|.-+.+.+|+|+|||..
T Consensus 44 ~~Ge~~~l~G~NGsGKSTL 62 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTL 62 (267)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3678889999999999974
No 332
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=83.92 E-value=0.59 Score=32.64 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=16.3
Q ss_pred hcCCcEEEEccCCchHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~ 64 (130)
..|.-+.+.+|+|+|||..
T Consensus 39 ~~Gei~~l~G~NGsGKSTL 57 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTT 57 (256)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred cCCcEEEEECCCCCCHHHH
Confidence 3678889999999999973
No 333
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=83.91 E-value=0.6 Score=29.72 Aligned_cols=16 Identities=19% Similarity=0.395 Sum_probs=13.7
Q ss_pred CcEEEEccCCchHHHH
Q psy3307 49 RDVMACAQTGSGKTAA 64 (130)
Q Consensus 49 ~~~l~~aptGsGKT~~ 64 (130)
+.+++.++.|||||..
T Consensus 3 ~~I~l~G~~GsGKsT~ 18 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTV 18 (173)
T ss_dssp CCEEEESCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4688999999999974
No 334
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=83.90 E-value=2.1 Score=33.62 Aligned_cols=27 Identities=22% Similarity=0.413 Sum_probs=19.7
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHH
Q psy3307 48 GRDVMACAQTGSGKTAAFLVPILNQMY 74 (130)
Q Consensus 48 g~~~l~~aptGsGKT~~~~l~~l~~~~ 74 (130)
..++++.+.||||||.+.-.-+++.++
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~ 240 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILF 240 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999875444444443
No 335
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=83.87 E-value=0.53 Score=31.57 Aligned_cols=17 Identities=24% Similarity=0.433 Sum_probs=14.6
Q ss_pred CCcEEEEccCCchHHHH
Q psy3307 48 GRDVMACAQTGSGKTAA 64 (130)
Q Consensus 48 g~~~l~~aptGsGKT~~ 64 (130)
+..+++.++.|||||..
T Consensus 5 ~~~I~l~G~~GsGKsT~ 21 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQ 21 (217)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 46789999999999964
No 336
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=83.87 E-value=0.55 Score=35.30 Aligned_cols=15 Identities=27% Similarity=0.446 Sum_probs=12.7
Q ss_pred cEEEEccCCchHHHH
Q psy3307 50 DVMACAQTGSGKTAA 64 (130)
Q Consensus 50 ~~l~~aptGsGKT~~ 64 (130)
-+++.||||||||..
T Consensus 4 ~i~i~GptgsGKttl 18 (409)
T 3eph_A 4 VIVIAGTTGVGKSQL 18 (409)
T ss_dssp EEEEEECSSSSHHHH
T ss_pred EEEEECcchhhHHHH
Confidence 367899999999964
No 337
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=83.84 E-value=0.47 Score=32.69 Aligned_cols=19 Identities=16% Similarity=0.272 Sum_probs=16.3
Q ss_pred hcCCcEEEEccCCchHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~ 64 (130)
..|.-+.+.+|+|+|||..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTL 44 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTI 44 (243)
T ss_dssp CTTEEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3677889999999999973
No 338
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=83.84 E-value=0.83 Score=32.83 Aligned_cols=27 Identities=11% Similarity=0.161 Sum_probs=18.6
Q ss_pred cCCcEEEEccCCchHHHHHHHHHHHHHHh
Q psy3307 47 SGRDVMACAQTGSGKTAAFLVPILNQMYE 75 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~~~l~~l~~~~~ 75 (130)
.|.-+.+.||+|||||.. +-+|..+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL--~~~L~gll~ 115 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTT--ARVLQALLA 115 (312)
T ss_dssp CCEEEEEECCTTSCHHHH--HHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHH--HHHHHhhcc
Confidence 455678999999999974 344444443
No 339
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=83.77 E-value=0.53 Score=30.41 Aligned_cols=16 Identities=31% Similarity=0.387 Sum_probs=13.7
Q ss_pred CcEEEEccCCchHHHH
Q psy3307 49 RDVMACAQTGSGKTAA 64 (130)
Q Consensus 49 ~~~l~~aptGsGKT~~ 64 (130)
+-+++.++.|||||..
T Consensus 7 ~~I~l~G~~GsGKsT~ 22 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQ 22 (194)
T ss_dssp EEEEEEESTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 3588999999999975
No 340
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=83.65 E-value=0.56 Score=30.86 Aligned_cols=16 Identities=19% Similarity=0.306 Sum_probs=13.3
Q ss_pred cEEEEccCCchHHHHH
Q psy3307 50 DVMACAQTGSGKTAAF 65 (130)
Q Consensus 50 ~~l~~aptGsGKT~~~ 65 (130)
.+.+.|++|||||...
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4788999999999753
No 341
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=83.60 E-value=0.61 Score=32.69 Aligned_cols=18 Identities=33% Similarity=0.529 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCchHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~ 64 (130)
.|.-+.+.+|+|+|||..
T Consensus 49 ~Gei~~liG~NGsGKSTL 66 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTF 66 (263)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEEcCCCCcHHHH
Confidence 677889999999999973
No 342
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=83.52 E-value=2.1 Score=28.01 Aligned_cols=15 Identities=27% Similarity=0.113 Sum_probs=12.4
Q ss_pred cEEEEccCCchHHHH
Q psy3307 50 DVMACAQTGSGKTAA 64 (130)
Q Consensus 50 ~~l~~aptGsGKT~~ 64 (130)
-+.+.++.|||||..
T Consensus 6 ~i~i~G~sGsGKTTl 20 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL 20 (169)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467889999999964
No 343
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=83.50 E-value=0.7 Score=34.45 Aligned_cols=21 Identities=38% Similarity=0.768 Sum_probs=16.7
Q ss_pred HhcCCc--EEEEccCCchHHHHH
Q psy3307 45 IISGRD--VMACAQTGSGKTAAF 65 (130)
Q Consensus 45 ~~~g~~--~l~~aptGsGKT~~~ 65 (130)
+++|.+ ++.-+.||||||++.
T Consensus 94 ~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 94 LLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HTTTCCEEEEEESCTTSSHHHHH
T ss_pred hhcCceeeEeeecCCCCCCCeEe
Confidence 457864 577899999999875
No 344
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=83.50 E-value=1.8 Score=32.50 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=19.2
Q ss_pred cCCcEEEEccCCchHHHHHHHHHHHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAAFLVPILNQMY 74 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~~~l~~l~~~~ 74 (130)
.|.-+++.|++|+|||... +-+...+.
T Consensus 202 ~G~liiI~G~pG~GKTtl~-l~ia~~~~ 228 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFA-LNIAQNVA 228 (454)
T ss_dssp TTCEEEEECCTTSCHHHHH-HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH-HHHHHHHH
Confidence 5578899999999999644 44444333
No 345
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=83.50 E-value=0.62 Score=32.74 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=16.4
Q ss_pred hcCCcEEEEccCCchHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~ 64 (130)
..|.-+.+.+|+|+|||..
T Consensus 43 ~~Ge~~~i~G~nGsGKSTL 61 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTV 61 (271)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4778889999999999973
No 346
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=83.49 E-value=1.6 Score=30.91 Aligned_cols=16 Identities=25% Similarity=0.434 Sum_probs=12.2
Q ss_pred cEEEEccCCchHHHHH
Q psy3307 50 DVMACAQTGSGKTAAF 65 (130)
Q Consensus 50 ~~l~~aptGsGKT~~~ 65 (130)
-+++.+|+|+|||...
T Consensus 50 ~~L~~G~~G~GKT~la 65 (324)
T 3u61_B 50 IILHSPSPGTGKTTVA 65 (324)
T ss_dssp EEEECSSTTSSHHHHH
T ss_pred EEEeeCcCCCCHHHHH
Confidence 4566777999999753
No 347
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=83.46 E-value=1.9 Score=31.37 Aligned_cols=18 Identities=33% Similarity=0.403 Sum_probs=15.3
Q ss_pred CCcEEEEccCCchHHHHH
Q psy3307 48 GRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 48 g~~~l~~aptGsGKT~~~ 65 (130)
|+-+++.+++|+|||...
T Consensus 61 G~iv~I~G~pGsGKTtLa 78 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVA 78 (349)
T ss_dssp TSEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 467899999999999754
No 348
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=83.41 E-value=0.63 Score=32.92 Aligned_cols=19 Identities=26% Similarity=0.407 Sum_probs=16.2
Q ss_pred hcCCcEEEEccCCchHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~ 64 (130)
..|.-+.+.+|+|+|||..
T Consensus 45 ~~Ge~~~liG~NGsGKSTL 63 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTL 63 (279)
T ss_dssp ETTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3677889999999999973
No 349
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=83.41 E-value=0.59 Score=31.21 Aligned_cols=16 Identities=19% Similarity=0.258 Sum_probs=13.7
Q ss_pred CcEEEEccCCchHHHH
Q psy3307 49 RDVMACAQTGSGKTAA 64 (130)
Q Consensus 49 ~~~l~~aptGsGKT~~ 64 (130)
..+.+.|++|||||..
T Consensus 6 ~~i~i~G~~GsGKSTl 21 (227)
T 1cke_A 6 PVITIDGPSGAGKGTL 21 (227)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4688999999999964
No 350
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=83.37 E-value=0.57 Score=31.77 Aligned_cols=18 Identities=22% Similarity=0.383 Sum_probs=15.3
Q ss_pred cCCcEEEEccCCchHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~ 64 (130)
.+..+++.+++|||||..
T Consensus 15 ~~~~I~l~G~~GsGKsT~ 32 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQ 32 (233)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 456899999999999964
No 351
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=83.30 E-value=1.3 Score=34.09 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=17.8
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHHh
Q psy3307 48 GRDVMACAQTGSGKTAAFLVPILNQMYE 75 (130)
Q Consensus 48 g~~~l~~aptGsGKT~~~~l~~l~~~~~ 75 (130)
|.-+.+.|++|+|||... -.|..++.
T Consensus 293 GeVI~LVGpNGSGKTTLl--~~LAgll~ 318 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTI--GKLARQFE 318 (503)
T ss_dssp TEEEEEECCTTSSHHHHH--HHHHHHHH
T ss_pred CeEEEEECCCcccHHHHH--HHHHHHhh
Confidence 446789999999999843 33444443
No 352
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=83.20 E-value=1.8 Score=32.40 Aligned_cols=27 Identities=26% Similarity=0.252 Sum_probs=18.8
Q ss_pred cCCcEEEEccCCchHHHHHHHHHHHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAAFLVPILNQMY 74 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~~~l~~l~~~~ 74 (130)
.|.-+++.|++|+|||.. ++-+.....
T Consensus 199 ~G~l~ii~G~pg~GKT~l-al~ia~~~a 225 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAF-ALTIAQNAA 225 (444)
T ss_dssp TTCEEEEEECTTSCHHHH-HHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHH-HHHHHHHHH
Confidence 456789999999999964 344444443
No 353
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=83.19 E-value=0.6 Score=32.36 Aligned_cols=18 Identities=17% Similarity=0.097 Sum_probs=14.7
Q ss_pred CCcEEEEccCCchHHHHH
Q psy3307 48 GRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 48 g~~~l~~aptGsGKT~~~ 65 (130)
+.-+++.|++|||||...
T Consensus 4 ~~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFS 21 (260)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CEEEEEEcCCCCCHHHHH
Confidence 346899999999999743
No 354
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=83.13 E-value=2 Score=29.36 Aligned_cols=40 Identities=18% Similarity=0.261 Sum_probs=25.4
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEcCcHH
Q psy3307 48 GRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRE 106 (130)
Q Consensus 48 g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 106 (130)
|+=.++.++-|+|||... +-.+.+..... -+++++.|..+
T Consensus 28 G~l~vitG~MgsGKTT~l-L~~a~r~~~~g------------------~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEEL-IRRVRRTQFAK------------------QHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHH-HHHHHHHHHTT------------------CCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHH-HHHHHHHHHCC------------------CEEEEEEeccC
Confidence 455567898899999764 44444544433 35888877754
No 355
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=83.13 E-value=0.46 Score=30.56 Aligned_cols=19 Identities=21% Similarity=0.151 Sum_probs=11.2
Q ss_pred cCCcEEEEccCCchHHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~~ 65 (130)
.+.-+++.++.|||||...
T Consensus 4 ~~~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTA 22 (183)
T ss_dssp -CCEEEEECCC----CHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3567899999999999753
No 356
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=83.02 E-value=0.96 Score=34.30 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=17.3
Q ss_pred HHhcCCc--EEEEccCCchHHHHH
Q psy3307 44 VIISGRD--VMACAQTGSGKTAAF 65 (130)
Q Consensus 44 ~~~~g~~--~l~~aptGsGKT~~~ 65 (130)
.+++|.| ++.-+.||||||++.
T Consensus 131 ~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 131 HNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HhhcCCceEEEEeCCCCCCCCEEe
Confidence 4468864 577889999999875
No 357
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=82.94 E-value=0.63 Score=30.70 Aligned_cols=15 Identities=40% Similarity=0.317 Sum_probs=12.7
Q ss_pred cEEEEccCCchHHHH
Q psy3307 50 DVMACAQTGSGKTAA 64 (130)
Q Consensus 50 ~~l~~aptGsGKT~~ 64 (130)
-+.+.|+.|||||..
T Consensus 4 ~i~l~G~~GsGKST~ 18 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTI 18 (206)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367899999999974
No 358
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=82.75 E-value=0.41 Score=33.02 Aligned_cols=17 Identities=29% Similarity=0.450 Sum_probs=14.5
Q ss_pred CCcEEEEccCCchHHHH
Q psy3307 48 GRDVMACAQTGSGKTAA 64 (130)
Q Consensus 48 g~~~l~~aptGsGKT~~ 64 (130)
+..+++.|++|||||..
T Consensus 32 ~~~i~l~G~~GsGKSTl 48 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTI 48 (253)
T ss_dssp CEEEEEESCGGGTTHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45789999999999974
No 359
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=82.74 E-value=0.62 Score=30.62 Aligned_cols=17 Identities=18% Similarity=0.311 Sum_probs=14.1
Q ss_pred CcEEEEccCCchHHHHH
Q psy3307 49 RDVMACAQTGSGKTAAF 65 (130)
Q Consensus 49 ~~~l~~aptGsGKT~~~ 65 (130)
+-+++.|+.|||||...
T Consensus 16 ~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46889999999999753
No 360
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=82.68 E-value=0.87 Score=33.79 Aligned_cols=24 Identities=38% Similarity=0.581 Sum_probs=18.0
Q ss_pred HhHHhcCCc--EEEEccCCchHHHHH
Q psy3307 42 IPVIISGRD--VMACAQTGSGKTAAF 65 (130)
Q Consensus 42 i~~~~~g~~--~l~~aptGsGKT~~~ 65 (130)
+..+++|.| ++.-+.||||||++.
T Consensus 108 v~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 108 VQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhcCCCceEEEEeCCCCCCCceEe
Confidence 344568864 577789999999875
No 361
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=82.68 E-value=0.59 Score=37.47 Aligned_cols=19 Identities=26% Similarity=0.351 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCchHHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~~ 65 (130)
...++++.||+|+|||...
T Consensus 200 ~~~~vLL~G~pGtGKT~la 218 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIA 218 (758)
T ss_dssp SSCEEEEESCTTTTTHHHH
T ss_pred CCCCeEEECCCCCCHHHHH
Confidence 3469999999999999753
No 362
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=82.59 E-value=0.58 Score=30.55 Aligned_cols=15 Identities=20% Similarity=0.459 Sum_probs=12.8
Q ss_pred cEEEEccCCchHHHH
Q psy3307 50 DVMACAQTGSGKTAA 64 (130)
Q Consensus 50 ~~l~~aptGsGKT~~ 64 (130)
.+++.|+.|||||..
T Consensus 2 ~I~i~G~~GsGKsT~ 16 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTI 16 (205)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCccCHHHH
Confidence 478899999999974
No 363
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=82.31 E-value=1.7 Score=31.16 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=13.9
Q ss_pred CcEEEEccCCchHHHHH
Q psy3307 49 RDVMACAQTGSGKTAAF 65 (130)
Q Consensus 49 ~~~l~~aptGsGKT~~~ 65 (130)
+-+++.+++|+|||...
T Consensus 105 ~vi~ivG~~GsGKTTl~ 121 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSC 121 (306)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 45789999999999753
No 364
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=82.29 E-value=0.74 Score=31.77 Aligned_cols=19 Identities=16% Similarity=0.197 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCchHHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~~ 65 (130)
.|.-+.+.+|+|||||...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLC 44 (252)
T ss_dssp TSCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4678999999999999753
No 365
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=82.27 E-value=0.57 Score=38.07 Aligned_cols=18 Identities=28% Similarity=0.494 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCchHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~ 64 (130)
.++.+++.+|+|+|||..
T Consensus 237 ~~~~vLL~Gp~GtGKTtL 254 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLI 254 (806)
T ss_dssp CCCEEEECSCTTSSHHHH
T ss_pred CCCeEEEECcCCCCHHHH
Confidence 567899999999999974
No 366
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=82.26 E-value=0.68 Score=29.46 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=14.1
Q ss_pred CcEEEEccCCchHHHH
Q psy3307 49 RDVMACAQTGSGKTAA 64 (130)
Q Consensus 49 ~~~l~~aptGsGKT~~ 64 (130)
.++++.++.|||||..
T Consensus 8 ~~i~l~G~~GsGKSTv 23 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSL 23 (168)
T ss_dssp CEEEEESCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 5789999999999974
No 367
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=82.01 E-value=1.3 Score=29.57 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=15.8
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHH
Q psy3307 50 DVMACAQTGSGKTAAFLVPILNQMY 74 (130)
Q Consensus 50 ~~l~~aptGsGKT~~~~l~~l~~~~ 74 (130)
-.++.+|+|+|||.. +-++..+.
T Consensus 25 ~~~I~G~NgsGKSti--l~ai~~~l 47 (203)
T 3qks_A 25 INLIIGQNGSGKSSL--LDAILVGL 47 (203)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHH
T ss_pred eEEEEcCCCCCHHHH--HHHHHHHh
Confidence 457889999999974 33444433
No 368
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=81.92 E-value=0.77 Score=31.49 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=15.2
Q ss_pred cCCcEEEEccCCchHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~ 64 (130)
.+..+++.|+.|||||..
T Consensus 28 ~~~~I~l~G~~GsGKsT~ 45 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQ 45 (243)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 445799999999999964
No 369
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=81.79 E-value=1.3 Score=32.33 Aligned_cols=21 Identities=24% Similarity=0.240 Sum_probs=15.8
Q ss_pred cEEEEccCCchHHHHHHHHHHHH
Q psy3307 50 DVMACAQTGSGKTAAFLVPILNQ 72 (130)
Q Consensus 50 ~~l~~aptGsGKT~~~~l~~l~~ 72 (130)
-.++.|+||+|||.. +-.+..
T Consensus 27 l~vi~G~NGaGKT~i--leAI~~ 47 (371)
T 3auy_A 27 IVAIIGENGSGKSSI--FEAVFF 47 (371)
T ss_dssp EEEEEECTTSSHHHH--HHHHHH
T ss_pred eEEEECCCCCCHHHH--HHHHHH
Confidence 457899999999974 555555
No 370
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=81.76 E-value=0.83 Score=32.83 Aligned_cols=26 Identities=23% Similarity=0.617 Sum_probs=19.3
Q ss_pred cCCcEEEEccCCchHHHHHHHHHHHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAAFLVPILNQMY 74 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~~~l~~l~~~~ 74 (130)
.|.-+.+.+|+|+|||. ++-++..++
T Consensus 79 ~Ge~vaivG~sGsGKST--Ll~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKST--ILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHH--HHHHHTTSS
T ss_pred CCCEEEEECCCCchHHH--HHHHHHcCC
Confidence 67788999999999997 344444433
No 371
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=81.72 E-value=0.66 Score=31.29 Aligned_cols=15 Identities=20% Similarity=0.290 Sum_probs=12.4
Q ss_pred cEEEEccCCchHHHH
Q psy3307 50 DVMACAQTGSGKTAA 64 (130)
Q Consensus 50 ~~l~~aptGsGKT~~ 64 (130)
.+++.+|+||||+.-
T Consensus 2 ~Iil~GpPGsGKgTq 16 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQ 16 (206)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999853
No 372
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=81.52 E-value=2.6 Score=29.02 Aligned_cols=17 Identities=47% Similarity=0.556 Sum_probs=14.8
Q ss_pred cEEEEccCCchHHHHHH
Q psy3307 50 DVMACAQTGSGKTAAFL 66 (130)
Q Consensus 50 ~~l~~aptGsGKT~~~~ 66 (130)
++++.++.|+|||...+
T Consensus 8 ~I~~~~kgGvGKTt~a~ 24 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAML 24 (228)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 68999999999998753
No 373
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=81.50 E-value=4.1 Score=30.73 Aligned_cols=17 Identities=35% Similarity=0.358 Sum_probs=14.2
Q ss_pred CcEEEEccCCchHHHHH
Q psy3307 49 RDVMACAQTGSGKTAAF 65 (130)
Q Consensus 49 ~~~l~~aptGsGKT~~~ 65 (130)
+-+++.+++|+|||...
T Consensus 98 ~vI~lvG~~GsGKTTt~ 114 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTA 114 (433)
T ss_dssp EEEEECCCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46788999999999754
No 374
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=81.49 E-value=0.73 Score=29.78 Aligned_cols=15 Identities=33% Similarity=0.295 Sum_probs=12.7
Q ss_pred cEEEEccCCchHHHH
Q psy3307 50 DVMACAQTGSGKTAA 64 (130)
Q Consensus 50 ~~l~~aptGsGKT~~ 64 (130)
-+++.|+.|||||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQ 16 (195)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 368899999999974
No 375
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=81.45 E-value=0.8 Score=32.59 Aligned_cols=18 Identities=33% Similarity=0.532 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCchHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~ 64 (130)
.|.-+.+.+|+|+|||..
T Consensus 63 ~Ge~~~i~G~NGsGKSTL 80 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSL 80 (290)
T ss_dssp TTCEEEEEESTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 677889999999999973
No 376
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=81.44 E-value=2.3 Score=30.76 Aligned_cols=24 Identities=13% Similarity=0.238 Sum_probs=17.2
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHh
Q psy3307 50 DVMACAQTGSGKTAAFLVPILNQMYE 75 (130)
Q Consensus 50 ~~l~~aptGsGKT~~~~l~~l~~~~~ 75 (130)
-+.+.||+|||||.. +-.|..+..
T Consensus 94 iigI~GpsGSGKSTl--~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTT--SRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHHT
T ss_pred EEEEECCCCCCHHHH--HHHHHHHhc
Confidence 478899999999974 344555443
No 377
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=81.42 E-value=0.75 Score=29.15 Aligned_cols=15 Identities=20% Similarity=0.220 Sum_probs=13.0
Q ss_pred cEEEEccCCchHHHH
Q psy3307 50 DVMACAQTGSGKTAA 64 (130)
Q Consensus 50 ~~l~~aptGsGKT~~ 64 (130)
.+++.++.|||||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTV 16 (168)
T ss_dssp EEEEESCTTSCHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 478999999999974
No 378
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=81.15 E-value=0.68 Score=30.65 Aligned_cols=18 Identities=22% Similarity=0.038 Sum_probs=14.7
Q ss_pred cCCcEEEEccCCchHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~ 64 (130)
.+.-+.+.+++|||||..
T Consensus 21 ~~~~i~i~G~~GsGKstl 38 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTL 38 (201)
T ss_dssp SSEEEEEEECTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 345688999999999974
No 379
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=81.07 E-value=0.82 Score=32.03 Aligned_cols=17 Identities=41% Similarity=0.636 Sum_probs=15.2
Q ss_pred CCcEEEEccCCchHHHH
Q psy3307 48 GRDVMACAQTGSGKTAA 64 (130)
Q Consensus 48 g~~~l~~aptGsGKT~~ 64 (130)
|.-+.+.+|+|+|||..
T Consensus 30 Ge~~~i~G~NGsGKSTL 46 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTL 46 (263)
T ss_dssp SSEEEEECCTTSSHHHH
T ss_pred CEEEEEECCCCCCHHHH
Confidence 77888999999999974
No 380
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=80.98 E-value=0.73 Score=37.57 Aligned_cols=17 Identities=29% Similarity=0.501 Sum_probs=15.0
Q ss_pred CcEEEEccCCchHHHHH
Q psy3307 49 RDVMACAQTGSGKTAAF 65 (130)
Q Consensus 49 ~~~l~~aptGsGKT~~~ 65 (130)
+.+++.+|+|+|||+..
T Consensus 239 ~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 68999999999999743
No 381
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=80.75 E-value=0.78 Score=30.55 Aligned_cols=15 Identities=13% Similarity=0.222 Sum_probs=13.0
Q ss_pred cEEEEccCCchHHHH
Q psy3307 50 DVMACAQTGSGKTAA 64 (130)
Q Consensus 50 ~~l~~aptGsGKT~~ 64 (130)
.+++.|+.|||||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQ 16 (214)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999974
No 382
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=80.64 E-value=0.82 Score=29.66 Aligned_cols=14 Identities=29% Similarity=0.389 Sum_probs=12.3
Q ss_pred EEEEccCCchHHHH
Q psy3307 51 VMACAQTGSGKTAA 64 (130)
Q Consensus 51 ~l~~aptGsGKT~~ 64 (130)
+++.|+.|||||..
T Consensus 3 I~l~G~~GsGKsT~ 16 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQ 16 (197)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 67899999999974
No 383
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=80.51 E-value=1.2 Score=35.59 Aligned_cols=25 Identities=44% Similarity=0.618 Sum_probs=19.5
Q ss_pred HHhHHhcCCc--EEEEccCCchHHHHH
Q psy3307 41 AIPVIISGRD--VMACAQTGSGKTAAF 65 (130)
Q Consensus 41 ~i~~~~~g~~--~l~~aptGsGKT~~~ 65 (130)
.+..+++|.| ++.-+.||||||.+.
T Consensus 454 ~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 454 LIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEccCCCCCchhhcc
Confidence 4566788875 566789999999874
No 384
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=80.48 E-value=0.75 Score=31.46 Aligned_cols=19 Identities=21% Similarity=0.120 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCchHHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~~ 65 (130)
.|.-+.+.+|+|||||...
T Consensus 24 ~g~iigI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVC 42 (245)
T ss_dssp CSEEEEEECSTTSSHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4556789999999999753
No 385
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=80.48 E-value=1.1 Score=32.59 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=18.7
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHH
Q psy3307 48 GRDVMACAQTGSGKTAAFLVPILNQMY 74 (130)
Q Consensus 48 g~~~l~~aptGsGKT~~~~l~~l~~~~ 74 (130)
|+-+.+.+|+|+|||. ++-+|..++
T Consensus 170 g~k~~IvG~nGsGKST--Llk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSV--LVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHH--HHHHHHHHT
T ss_pred hCeEEEECCCCCCHHH--HHHHHHHHh
Confidence 7788999999999997 344444443
No 386
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=80.47 E-value=3.3 Score=30.17 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=19.0
Q ss_pred cCCcEEEEccCCchHHHHHHHHHHHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAAFLVPILNQMY 74 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~~~l~~l~~~~ 74 (130)
.|.-+++.|++|+|||... +-+...+.
T Consensus 45 ~G~LiiIaG~pG~GKTt~a-l~ia~~~a 71 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLM-MNMVLSAL 71 (338)
T ss_dssp TTCEEEEEECTTSCHHHHH-HHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHH-HHHHHHHH
Confidence 5577899999999999644 44444333
No 387
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=80.02 E-value=0.85 Score=42.49 Aligned_cols=19 Identities=37% Similarity=0.688 Sum_probs=16.9
Q ss_pred HhcCCcEEEEccCCchHHH
Q psy3307 45 IISGRDVMACAQTGSGKTA 63 (130)
Q Consensus 45 ~~~g~~~l~~aptGsGKT~ 63 (130)
+..|+.++++||||+|||.
T Consensus 1301 l~~~~pvLL~GptGtGKT~ 1319 (3245)
T 3vkg_A 1301 LSEHRPLILCGPPGSGKTM 1319 (3245)
T ss_dssp HHTTCCCEEESSTTSSHHH
T ss_pred HHCCCcEEEECCCCCCHHH
Confidence 4478999999999999995
No 388
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=79.97 E-value=1.6 Score=30.94 Aligned_cols=16 Identities=25% Similarity=0.304 Sum_probs=13.3
Q ss_pred CcEEEEccCCchHHHH
Q psy3307 49 RDVMACAQTGSGKTAA 64 (130)
Q Consensus 49 ~~~l~~aptGsGKT~~ 64 (130)
.-+.+.|++|||||..
T Consensus 32 ~ii~I~G~sGsGKSTl 47 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFT 47 (290)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3567899999999974
No 389
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=79.94 E-value=0.9 Score=31.81 Aligned_cols=16 Identities=25% Similarity=0.306 Sum_probs=13.5
Q ss_pred cEEEEccCCchHHHHH
Q psy3307 50 DVMACAQTGSGKTAAF 65 (130)
Q Consensus 50 ~~l~~aptGsGKT~~~ 65 (130)
-+++.+++|||||...
T Consensus 4 ~I~l~G~~GsGKST~a 19 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWA 19 (301)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999753
No 390
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=79.94 E-value=0.89 Score=36.35 Aligned_cols=19 Identities=26% Similarity=0.386 Sum_probs=16.1
Q ss_pred cCCcEEEEccCCchHHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~~ 65 (130)
.+.++++.||+|+|||...
T Consensus 206 ~~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp SSCEEEEECCTTSSHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHH
Confidence 4578999999999999753
No 391
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=79.92 E-value=0.92 Score=30.55 Aligned_cols=15 Identities=27% Similarity=0.561 Sum_probs=12.9
Q ss_pred cEEEEccCCchHHHH
Q psy3307 50 DVMACAQTGSGKTAA 64 (130)
Q Consensus 50 ~~l~~aptGsGKT~~ 64 (130)
.+++.|+.|||||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQ 16 (223)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999974
No 392
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=79.84 E-value=0.81 Score=31.20 Aligned_cols=18 Identities=22% Similarity=0.394 Sum_probs=14.2
Q ss_pred cCCcEEEEccCCchHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~ 64 (130)
..+-+++.+|+||||+.-
T Consensus 28 k~kiI~llGpPGsGKgTq 45 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQ 45 (217)
T ss_dssp SCEEEEEECCTTCCHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 445678899999999753
No 393
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=79.79 E-value=1.8 Score=33.21 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=20.5
Q ss_pred hcCCcEEEEccCCchHHHHHHHHHHHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAAFLVPILNQMY 74 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~~~l~~l~~~~ 74 (130)
..|.-+.+.+|+|+|||.....-++.-+.
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999765432233333
No 394
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=79.70 E-value=0.95 Score=31.21 Aligned_cols=16 Identities=25% Similarity=0.322 Sum_probs=13.5
Q ss_pred CcEEEEccCCchHHHH
Q psy3307 49 RDVMACAQTGSGKTAA 64 (130)
Q Consensus 49 ~~~l~~aptGsGKT~~ 64 (130)
.-+.+.+|+|+|||..
T Consensus 25 e~~~liG~nGsGKSTL 40 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVF 40 (240)
T ss_dssp SEEEEECCTTSSHHHH
T ss_pred EEEEEECCCCCCHHHH
Confidence 5567899999999973
No 395
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=79.66 E-value=2.3 Score=30.57 Aligned_cols=17 Identities=29% Similarity=0.458 Sum_probs=13.8
Q ss_pred CcEEEEccCCchHHHHH
Q psy3307 49 RDVMACAQTGSGKTAAF 65 (130)
Q Consensus 49 ~~~l~~aptGsGKT~~~ 65 (130)
+-+.+.+++|+|||...
T Consensus 106 ~vI~ivG~~G~GKTT~~ 122 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSL 122 (320)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45788899999999753
No 396
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=79.55 E-value=1.5 Score=35.10 Aligned_cols=16 Identities=31% Similarity=0.345 Sum_probs=14.0
Q ss_pred cEEEEccCCchHHHHH
Q psy3307 50 DVMACAQTGSGKTAAF 65 (130)
Q Consensus 50 ~~l~~aptGsGKT~~~ 65 (130)
.+++.||+|+|||...
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4999999999999754
No 397
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=79.19 E-value=1.1 Score=33.25 Aligned_cols=18 Identities=28% Similarity=0.182 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCchHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~ 64 (130)
.|+-+.+.||+|+|||..
T Consensus 168 ~~~~i~l~G~~GsGKSTl 185 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTL 185 (377)
T ss_dssp TCCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 667899999999999874
No 398
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=79.13 E-value=0.49 Score=31.29 Aligned_cols=14 Identities=21% Similarity=0.342 Sum_probs=12.3
Q ss_pred EEEEccCCchHHHH
Q psy3307 51 VMACAQTGSGKTAA 64 (130)
Q Consensus 51 ~l~~aptGsGKT~~ 64 (130)
+++.|+.|||||..
T Consensus 3 I~i~G~~GsGKsTl 16 (214)
T 1gtv_A 3 IAIEGVDGAGKRTL 16 (214)
T ss_dssp EEEEEEEEEEHHHH
T ss_pred EEEEcCCCCCHHHH
Confidence 67899999999974
No 399
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=79.07 E-value=0.89 Score=30.77 Aligned_cols=17 Identities=35% Similarity=0.395 Sum_probs=14.9
Q ss_pred cCCcEEEEccCCchHHH
Q psy3307 47 SGRDVMACAQTGSGKTA 63 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~ 63 (130)
.|.-+.+.|+.|||||.
T Consensus 19 ~g~~i~i~G~~GsGKST 35 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTT 35 (230)
T ss_dssp CCEEEEEECSTTSCHHH
T ss_pred CceEEEEECCCCCCHHH
Confidence 46678999999999997
No 400
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=78.98 E-value=0.9 Score=32.79 Aligned_cols=15 Identities=33% Similarity=0.415 Sum_probs=12.5
Q ss_pred cEEEEccCCchHHHH
Q psy3307 50 DVMACAQTGSGKTAA 64 (130)
Q Consensus 50 ~~l~~aptGsGKT~~ 64 (130)
-.++.+|+|+|||..
T Consensus 25 ~~~i~G~NGsGKS~l 39 (339)
T 3qkt_A 25 INLIIGQNGSGKSSL 39 (339)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 346899999999975
No 401
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=78.82 E-value=1.4 Score=31.01 Aligned_cols=18 Identities=11% Similarity=-0.003 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCchHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~ 64 (130)
+|+.+++.||.|+|||..
T Consensus 30 ~~~~v~i~G~~G~GKT~L 47 (350)
T 2qen_A 30 NYPLTLLLGIRRVGKSSL 47 (350)
T ss_dssp HCSEEEEECCTTSSHHHH
T ss_pred cCCeEEEECCCcCCHHHH
Confidence 468999999999999964
No 402
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=78.65 E-value=1.3 Score=31.00 Aligned_cols=16 Identities=25% Similarity=0.466 Sum_probs=13.9
Q ss_pred cEEEEccCCchHHHHH
Q psy3307 50 DVMACAQTGSGKTAAF 65 (130)
Q Consensus 50 ~~l~~aptGsGKT~~~ 65 (130)
.+++.||+|+|||...
T Consensus 44 ~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSV 59 (323)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 5999999999999653
No 403
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=78.60 E-value=1 Score=29.40 Aligned_cols=16 Identities=25% Similarity=0.285 Sum_probs=13.5
Q ss_pred cEEEEccCCchHHHHH
Q psy3307 50 DVMACAQTGSGKTAAF 65 (130)
Q Consensus 50 ~~l~~aptGsGKT~~~ 65 (130)
-+.+.+++|||||...
T Consensus 10 ~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999753
No 404
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=78.53 E-value=0.99 Score=31.67 Aligned_cols=15 Identities=33% Similarity=0.658 Sum_probs=12.7
Q ss_pred cEEEEccCCchHHHH
Q psy3307 50 DVMACAQTGSGKTAA 64 (130)
Q Consensus 50 ~~l~~aptGsGKT~~ 64 (130)
.+.+.||+|+|||..
T Consensus 4 ~v~lvG~nGaGKSTL 18 (270)
T 3sop_A 4 NIMVVGQSGLGKSTL 18 (270)
T ss_dssp EEEEEESSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999974
No 405
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=78.19 E-value=0.86 Score=31.08 Aligned_cols=18 Identities=28% Similarity=0.244 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCchHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~ 64 (130)
.|.-+++.++.|||||..
T Consensus 25 ~g~~i~i~G~~GsGKsT~ 42 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTV 42 (229)
T ss_dssp CCEEEEEECCTTSCHHHH
T ss_pred CCeEEEEEcCCCCCHHHH
Confidence 577899999999999974
No 406
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=78.16 E-value=1.2 Score=32.88 Aligned_cols=19 Identities=26% Similarity=0.379 Sum_probs=16.2
Q ss_pred hcCCcEEEEccCCchHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~ 64 (130)
..|.-+.+.+|+|+|||..
T Consensus 28 ~~Ge~~~llGpsGsGKSTL 46 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTL 46 (359)
T ss_dssp CTTCEEEEEESTTSSHHHH
T ss_pred cCCCEEEEECCCCchHHHH
Confidence 3678889999999999973
No 407
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=78.05 E-value=1.1 Score=29.73 Aligned_cols=16 Identities=31% Similarity=0.316 Sum_probs=13.7
Q ss_pred CcEEEEccCCchHHHH
Q psy3307 49 RDVMACAQTGSGKTAA 64 (130)
Q Consensus 49 ~~~l~~aptGsGKT~~ 64 (130)
.-+.+.++.|||||..
T Consensus 5 ~~I~i~G~~GSGKST~ 20 (218)
T 1vht_A 5 YIVALTGGIGSGKSTV 20 (218)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4578999999999974
No 408
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=77.79 E-value=1 Score=36.04 Aligned_cols=16 Identities=31% Similarity=0.422 Sum_probs=14.1
Q ss_pred cEEEEccCCchHHHHH
Q psy3307 50 DVMACAQTGSGKTAAF 65 (130)
Q Consensus 50 ~~l~~aptGsGKT~~~ 65 (130)
++++.+|+|+|||...
T Consensus 490 ~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 6999999999999754
No 409
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=77.75 E-value=1.2 Score=32.64 Aligned_cols=19 Identities=37% Similarity=0.382 Sum_probs=16.4
Q ss_pred hcCCcEEEEccCCchHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~ 64 (130)
..|.-+.+.+|+|+|||..
T Consensus 39 ~~Ge~~~llGpnGsGKSTL 57 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTI 57 (355)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCcHHHH
Confidence 3778889999999999973
No 410
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=77.65 E-value=1 Score=32.11 Aligned_cols=26 Identities=12% Similarity=0.190 Sum_probs=17.9
Q ss_pred cCCcEEEEccCCchHHHHHHHHHHHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAAFLVPILNQMY 74 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~~~l~~l~~~~ 74 (130)
.|.-+.+.||+|||||.. +-+|..+.
T Consensus 79 ~g~iigI~G~~GsGKSTl--~~~L~~~l 104 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTT--ARVLQALL 104 (308)
T ss_dssp CCEEEEEEECTTSSHHHH--HHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHH--HHHHHHHH
Confidence 345678899999999974 34444443
No 411
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=77.55 E-value=3.2 Score=28.44 Aligned_cols=29 Identities=21% Similarity=0.092 Sum_probs=19.8
Q ss_pred cCCcEEEEccCCchHHHHHHHHHHHHHHhc
Q psy3307 47 SGRDVMACAQTGSGKTAAFLVPILNQMYER 76 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~~~l~~l~~~~~~ 76 (130)
.|.=.++.++-|+|||... +-.+.++...
T Consensus 27 ~G~I~vitG~M~sGKTT~L-lr~~~r~~~~ 55 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEEL-IRRLRRGIYA 55 (219)
T ss_dssp CCEEEEEEECTTSCHHHHH-HHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHH-HHHHHHHHHc
Confidence 4666788999999999754 4444555443
No 412
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=77.42 E-value=1.3 Score=32.60 Aligned_cols=19 Identities=32% Similarity=0.403 Sum_probs=16.2
Q ss_pred hcCCcEEEEccCCchHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~ 64 (130)
..|.-+.+.+|+|+|||..
T Consensus 27 ~~Ge~~~llGpnGsGKSTL 45 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTT 45 (359)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEEcCCCchHHHH
Confidence 3677889999999999973
No 413
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=77.28 E-value=1.1 Score=32.72 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCchHHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~~ 65 (130)
.|+.+++.+|+|+|||...
T Consensus 122 ~gsviLI~GpPGsGKTtLA 140 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLV 140 (331)
T ss_dssp ESEEEEEECSCSSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4567799999999999654
No 414
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=77.16 E-value=1.2 Score=32.64 Aligned_cols=19 Identities=37% Similarity=0.394 Sum_probs=16.3
Q ss_pred hcCCcEEEEccCCchHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~ 64 (130)
..|.-+.+.+|+|+|||..
T Consensus 24 ~~Ge~~~llGpnGsGKSTL 42 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLF 42 (348)
T ss_dssp CTTCEEEEECCCTHHHHHH
T ss_pred cCCCEEEEECCCCccHHHH
Confidence 3678889999999999973
No 415
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=77.12 E-value=1.3 Score=32.57 Aligned_cols=19 Identities=26% Similarity=0.359 Sum_probs=16.2
Q ss_pred hcCCcEEEEccCCchHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~ 64 (130)
..|.-+.+.+|+|+|||..
T Consensus 27 ~~Ge~~~llGpnGsGKSTL 45 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTL 45 (362)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred CCCCEEEEECCCCchHHHH
Confidence 3677889999999999973
No 416
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=77.06 E-value=4.1 Score=27.34 Aligned_cols=28 Identities=14% Similarity=0.140 Sum_probs=19.4
Q ss_pred cCCcEEEEccCCchHHHHHHHHHHHHHHh
Q psy3307 47 SGRDVMACAQTGSGKTAAFLVPILNQMYE 75 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~~~l~~l~~~~~ 75 (130)
.|+=.++.+|.|||||.-. +-.+.+...
T Consensus 19 ~g~l~fiyG~MgsGKTt~L-l~~i~n~~~ 46 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTEL-MRRVRRFQI 46 (195)
T ss_dssp CCEEEEEEECTTSCHHHHH-HHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHH-HHHHHHHHH
Confidence 4677789999999999543 444444443
No 417
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=77.04 E-value=7.7 Score=27.98 Aligned_cols=47 Identities=15% Similarity=0.159 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHCCCC-----CCcHHHHHHHhHHh-----------------cCCcEEEEccCCchHHHH
Q psy3307 18 MTEIITNNIALARYD-----KPTPVQKYAIPVII-----------------SGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 18 l~~~i~~~l~~~~~~-----~~t~~Q~~~i~~~~-----------------~g~~~l~~aptGsGKT~~ 64 (130)
.++++++.-++.++. ..+.--...+..++ .|+.+++.++.|+||+..
T Consensus 92 ~peelie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~~v~~~g~~vl~~G~sG~GKSt~ 160 (314)
T 1ko7_A 92 PPEELIEAAKEHETPLITSKIATTQLMSRLTTFLEHELARTTSLHGVLVDVYGVGVLITGDSGIGKSET 160 (314)
T ss_dssp CCHHHHHHHHHTTCCEEECCSCHHHHHHHHHHHHHHHTCEEEEEESEEEEETTEEEEEEESTTSSHHHH
T ss_pred CCHHHHHHHHHCCCeEEEECCchhHHHHHHHHHHHHhhccceeeeEEEEEECCEEEEEEeCCCCCHHHH
Confidence 478888888887764 22222222222222 278999999999999754
No 418
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=76.93 E-value=1.3 Score=32.94 Aligned_cols=19 Identities=37% Similarity=0.485 Sum_probs=16.6
Q ss_pred hcCCcEEEEccCCchHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~ 64 (130)
..|.-+.+.+|+|+|||..
T Consensus 45 ~~Ge~~~llGpsGsGKSTL 63 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTL 63 (390)
T ss_dssp CTTCEEEEEESTTSSHHHH
T ss_pred cCCCEEEEECCCCChHHHH
Confidence 4778899999999999974
No 419
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=76.87 E-value=1.2 Score=36.20 Aligned_cols=16 Identities=31% Similarity=0.351 Sum_probs=14.0
Q ss_pred cEEEEccCCchHHHHH
Q psy3307 50 DVMACAQTGSGKTAAF 65 (130)
Q Consensus 50 ~~l~~aptGsGKT~~~ 65 (130)
.+++.||+|+|||...
T Consensus 590 ~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEBSCSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6899999999999753
No 420
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=76.79 E-value=1.3 Score=29.58 Aligned_cols=19 Identities=16% Similarity=0.202 Sum_probs=16.3
Q ss_pred cCCcEEEEccCCchHHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~~ 65 (130)
.|+-+++.++.|+|||...
T Consensus 15 ~G~gvli~G~SGaGKStla 33 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELS 33 (181)
T ss_dssp TTEEEEEEESSSSSHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHH
Confidence 6788999999999999543
No 421
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=76.46 E-value=1.4 Score=32.52 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=16.3
Q ss_pred hcCCcEEEEccCCchHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~ 64 (130)
..|.-+.+.+|+|+|||..
T Consensus 27 ~~Ge~~~llGpnGsGKSTL 45 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTT 45 (372)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCcHHHHH
Confidence 3678889999999999973
No 422
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=76.14 E-value=1.6 Score=29.55 Aligned_cols=19 Identities=16% Similarity=0.162 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCchHHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~~ 65 (130)
.+..+.+.++.|||||...
T Consensus 15 ~~~~i~i~G~~gsGKst~~ 33 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVA 33 (236)
T ss_dssp CCCEEEEECSSCSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4567899999999999753
No 423
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=76.12 E-value=1.5 Score=32.63 Aligned_cols=26 Identities=19% Similarity=0.387 Sum_probs=19.0
Q ss_pred hcCCcEEEEccCCchHHHHHHHHHHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAAFLVPILNQM 73 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~~~l~~l~~~ 73 (130)
..|.-+.+.+|+|+|||.. +-++.-+
T Consensus 27 ~~Ge~~~llGpsGsGKSTL--Lr~iaGl 52 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTL--LRMIAGL 52 (381)
T ss_dssp CTTCEEEEECCTTSSHHHH--HHHHHTS
T ss_pred CCCCEEEEEcCCCchHHHH--HHHHHcC
Confidence 3678889999999999973 4444433
No 424
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=76.03 E-value=1.6 Score=33.20 Aligned_cols=19 Identities=26% Similarity=0.431 Sum_probs=17.0
Q ss_pred hcCCcEEEEccCCchHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~ 64 (130)
..|.-+.+.+|+|||||..
T Consensus 136 ~~Ge~v~IvGpnGsGKSTL 154 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSL 154 (460)
T ss_dssp SSCCCEEEEESTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4889999999999999974
No 425
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=75.96 E-value=1.5 Score=32.43 Aligned_cols=19 Identities=26% Similarity=0.415 Sum_probs=16.2
Q ss_pred hcCCcEEEEccCCchHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~ 64 (130)
..|.-+.+.+|+|+|||..
T Consensus 35 ~~Ge~~~llGpnGsGKSTL 53 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTT 53 (372)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred CCCCEEEEECCCCChHHHH
Confidence 3678889999999999973
No 426
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=75.52 E-value=1.5 Score=28.68 Aligned_cols=16 Identities=31% Similarity=0.322 Sum_probs=13.0
Q ss_pred CcEEEEccCCchHHHH
Q psy3307 49 RDVMACAQTGSGKTAA 64 (130)
Q Consensus 49 ~~~l~~aptGsGKT~~ 64 (130)
.-+.+.+++|+|||..
T Consensus 7 ~~i~i~G~sGsGKTTl 22 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTL 22 (174)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred eEEEEEeCCCCCHHHH
Confidence 3477899999999863
No 427
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=75.44 E-value=3.3 Score=31.41 Aligned_cols=26 Identities=15% Similarity=0.091 Sum_probs=18.6
Q ss_pred cCCcEEEEccCCchHHHHHHHHHHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAAFLVPILNQM 73 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~~~l~~l~~~ 73 (130)
.|.-+++.|++|+|||... +-+....
T Consensus 241 ~G~l~li~G~pG~GKT~la-l~~a~~~ 266 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFV-RQQALQW 266 (503)
T ss_dssp TTCEEEEEESSCHHHHHHH-HHHHHHH
T ss_pred CCeEEEEeecCCCCchHHH-HHHHHHH
Confidence 5578899999999999643 4443333
No 428
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=75.07 E-value=2.5 Score=29.81 Aligned_cols=16 Identities=13% Similarity=0.158 Sum_probs=14.2
Q ss_pred CcEEEEccCCchHHHH
Q psy3307 49 RDVMACAQTGSGKTAA 64 (130)
Q Consensus 49 ~~~l~~aptGsGKT~~ 64 (130)
..+++.||.|+|||..
T Consensus 31 ~~v~i~G~~G~GKT~L 46 (357)
T 2fna_A 31 PITLVLGLRRTGKSSI 46 (357)
T ss_dssp SEEEEEESTTSSHHHH
T ss_pred CcEEEECCCCCCHHHH
Confidence 6899999999999964
No 429
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=74.80 E-value=1.4 Score=28.85 Aligned_cols=19 Identities=26% Similarity=0.445 Sum_probs=15.8
Q ss_pred hcCCcEEEEccCCchHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~ 64 (130)
..|..+.+.+++|+|||..
T Consensus 24 ~~~~~v~lvG~~g~GKSTL 42 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSA 42 (210)
T ss_dssp SCSEEEEEEECTTSSHHHH
T ss_pred CCCcEEEEECCCCCCHHHH
Confidence 3566799999999999963
No 430
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=74.58 E-value=1.7 Score=31.51 Aligned_cols=17 Identities=24% Similarity=0.386 Sum_probs=14.1
Q ss_pred CCcEEE--EccCCchHHHH
Q psy3307 48 GRDVMA--CAQTGSGKTAA 64 (130)
Q Consensus 48 g~~~l~--~aptGsGKT~~ 64 (130)
+..+++ .||+|+|||..
T Consensus 50 ~~~~li~i~G~~G~GKT~L 68 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTL 68 (412)
T ss_dssp CEEEEEECTTCCSSSHHHH
T ss_pred CCEEEEeCcCcCCCCHHHH
Confidence 346888 89999999975
No 431
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=74.57 E-value=2.1 Score=30.43 Aligned_cols=18 Identities=28% Similarity=0.198 Sum_probs=15.0
Q ss_pred CCcEEEEccCCchHHHHH
Q psy3307 48 GRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 48 g~~~l~~aptGsGKT~~~ 65 (130)
|.-+++.+++|+|||...
T Consensus 98 g~i~~i~G~~gsGKT~la 115 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIM 115 (322)
T ss_dssp TEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 357899999999999754
No 432
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=74.56 E-value=1.5 Score=30.00 Aligned_cols=16 Identities=25% Similarity=0.256 Sum_probs=13.6
Q ss_pred cEEEEccCCchHHHHH
Q psy3307 50 DVMACAQTGSGKTAAF 65 (130)
Q Consensus 50 ~~l~~aptGsGKT~~~ 65 (130)
-+.+.|+.|||||...
T Consensus 24 iI~I~G~~GSGKST~a 39 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVC 39 (252)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999753
No 433
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=74.56 E-value=1.1 Score=32.79 Aligned_cols=19 Identities=26% Similarity=0.340 Sum_probs=16.3
Q ss_pred hcCCcEEEEccCCchHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~ 64 (130)
..|.-+.+.+|+|+|||..
T Consensus 29 ~~Ge~~~llGpnGsGKSTL 47 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTF 47 (353)
T ss_dssp CTTCEEEEECSCHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHH
Confidence 3678889999999999973
No 434
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=74.54 E-value=1.7 Score=32.10 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=19.0
Q ss_pred hcCCcEEEEccCCchHHHHHHHHHHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAAFLVPILNQM 73 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~~~l~~l~~~ 73 (130)
..|.-+.+.+|+|+|||.. +-++..+
T Consensus 52 ~~Gei~~IiGpnGaGKSTL--lr~i~GL 77 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTL--IRCVNLL 77 (366)
T ss_dssp CTTCEEEEECCTTSSHHHH--HHHHHTS
T ss_pred cCCCEEEEEcCCCchHHHH--HHHHhcC
Confidence 3678889999999999973 3444433
No 435
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=74.47 E-value=1.5 Score=32.59 Aligned_cols=17 Identities=29% Similarity=0.417 Sum_probs=14.2
Q ss_pred CcEEEEccCCchHHHHH
Q psy3307 49 RDVMACAQTGSGKTAAF 65 (130)
Q Consensus 49 ~~~l~~aptGsGKT~~~ 65 (130)
.-++++|++|||||...
T Consensus 259 ~lIil~G~pGSGKSTla 275 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFI 275 (416)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 46789999999999753
No 436
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=74.37 E-value=1.4 Score=35.83 Aligned_cols=17 Identities=29% Similarity=0.407 Sum_probs=14.7
Q ss_pred CCcEEEEccCCchHHHH
Q psy3307 48 GRDVMACAQTGSGKTAA 64 (130)
Q Consensus 48 g~~~l~~aptGsGKT~~ 64 (130)
..++++.||+|+|||..
T Consensus 191 ~~~vlL~G~pG~GKT~l 207 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAI 207 (854)
T ss_dssp CCCCEEEECTTSCHHHH
T ss_pred CCceEEEcCCCCCHHHH
Confidence 35899999999999974
No 437
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=74.21 E-value=2.3 Score=30.79 Aligned_cols=17 Identities=24% Similarity=0.077 Sum_probs=14.4
Q ss_pred CcEEEEccCCchHHHHH
Q psy3307 49 RDVMACAQTGSGKTAAF 65 (130)
Q Consensus 49 ~~~l~~aptGsGKT~~~ 65 (130)
.-+++.+++|+|||...
T Consensus 123 ~i~~I~G~~GsGKTtla 139 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLS 139 (343)
T ss_dssp EEEEEECCTTCTHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 56799999999999754
No 438
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=74.15 E-value=1.7 Score=33.82 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=16.4
Q ss_pred hcCCcEEEEccCCchHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~ 64 (130)
..|.-+.+.+|+|+|||..
T Consensus 365 ~~G~~~~ivG~sGsGKSTl 383 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTL 383 (578)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCChHHHH
Confidence 3678889999999999973
No 439
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=73.99 E-value=1.7 Score=28.91 Aligned_cols=17 Identities=18% Similarity=0.302 Sum_probs=13.7
Q ss_pred CcEEEEccCCchHHHHH
Q psy3307 49 RDVMACAQTGSGKTAAF 65 (130)
Q Consensus 49 ~~~l~~aptGsGKT~~~ 65 (130)
.-+.+.|+.|||||...
T Consensus 13 ~iIgltG~~GSGKSTva 29 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVC 29 (192)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35778999999999753
No 440
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=73.82 E-value=1.8 Score=28.27 Aligned_cols=15 Identities=27% Similarity=0.268 Sum_probs=12.8
Q ss_pred cEEEEccCCchHHHH
Q psy3307 50 DVMACAQTGSGKTAA 64 (130)
Q Consensus 50 ~~l~~aptGsGKT~~ 64 (130)
-+.+.++.|||||..
T Consensus 4 ~i~i~G~~GsGKst~ 18 (208)
T 3ake_A 4 IVTIDGPSASGKSSV 18 (208)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 477899999999965
No 441
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=73.72 E-value=2.2 Score=30.99 Aligned_cols=18 Identities=28% Similarity=0.174 Sum_probs=14.8
Q ss_pred CCcEEEEccCCchHHHHH
Q psy3307 48 GRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 48 g~~~l~~aptGsGKT~~~ 65 (130)
|.-+.+.+|+|+|||...
T Consensus 131 G~i~~I~G~~GsGKTTL~ 148 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLA 148 (349)
T ss_dssp SEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 357789999999999754
No 442
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=73.70 E-value=1.7 Score=29.46 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCchHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~ 64 (130)
.|.-+++.++.|||||..
T Consensus 2 ~g~~i~~eG~~gsGKsT~ 19 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTA 19 (213)
T ss_dssp CCCEEEEEECTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 477899999999999974
No 443
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=73.64 E-value=1.5 Score=34.13 Aligned_cols=27 Identities=26% Similarity=0.628 Sum_probs=20.2
Q ss_pred hcCCcEEEEccCCchHHHHHHHHHHHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAAFLVPILNQMY 74 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~~~l~~l~~~~ 74 (130)
..|+-+.+.+|+|+|||. ++-++..++
T Consensus 367 ~~G~~~~ivG~sGsGKST--ll~~l~g~~ 393 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKST--IANLFTRFY 393 (582)
T ss_pred CCCCEEEEECCCCCCHHH--HHHHHhcCC
Confidence 377889999999999997 344444444
No 444
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=73.26 E-value=2.9 Score=31.07 Aligned_cols=18 Identities=22% Similarity=0.243 Sum_probs=15.2
Q ss_pred cCCcEEEEccCCchHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~ 64 (130)
.+.-.++.+|+|+|||..
T Consensus 25 ~~~~~~i~G~nG~GKstl 42 (430)
T 1w1w_A 25 ESNFTSIIGPNGSGKSNM 42 (430)
T ss_dssp TCSEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 366788999999999973
No 445
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=73.25 E-value=1.7 Score=30.47 Aligned_cols=16 Identities=25% Similarity=0.268 Sum_probs=13.7
Q ss_pred cEEEEccCCchHHHHH
Q psy3307 50 DVMACAQTGSGKTAAF 65 (130)
Q Consensus 50 ~~l~~aptGsGKT~~~ 65 (130)
-+.+.|+.|||||...
T Consensus 77 iI~I~G~~GSGKSTva 92 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVA 92 (281)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999753
No 446
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=73.12 E-value=1.8 Score=29.45 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCchHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~ 64 (130)
.|.-+++.++.|+|||..
T Consensus 4 ~g~~i~~eG~~g~GKst~ 21 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQ 21 (216)
T ss_dssp CCCEEEEEECSSSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 578899999999999974
No 447
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=72.82 E-value=3.5 Score=30.22 Aligned_cols=15 Identities=27% Similarity=0.302 Sum_probs=13.2
Q ss_pred cEEEEccCCchHHHH
Q psy3307 50 DVMACAQTGSGKTAA 64 (130)
Q Consensus 50 ~~l~~aptGsGKT~~ 64 (130)
-.++.+|+|+|||..
T Consensus 28 ~~~i~G~nG~GKttl 42 (359)
T 2o5v_A 28 VTGIYGENGAGKTNL 42 (359)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCChhHH
Confidence 678899999999974
No 448
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=72.72 E-value=14 Score=27.85 Aligned_cols=32 Identities=16% Similarity=0.224 Sum_probs=23.9
Q ss_pred CcHHHHHHHhHHh---cCCcEEEEccCCchHHHHH
Q psy3307 34 PTPVQKYAIPVII---SGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 34 ~t~~Q~~~i~~~~---~g~~~l~~aptGsGKT~~~ 65 (130)
|-..-.++|...+ .|..+.+.+|+|+|||...
T Consensus 157 ~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl 191 (422)
T 3ice_A 157 TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLL 191 (422)
T ss_dssp TTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHH
T ss_pred cccccceeeeeeeeecCCcEEEEecCCCCChhHHH
Confidence 3444456665544 8899999999999999743
No 449
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=72.43 E-value=4.9 Score=28.40 Aligned_cols=19 Identities=26% Similarity=0.221 Sum_probs=14.6
Q ss_pred cCCcEEEEccCCchHHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~~ 65 (130)
.|+-+.+.+++|+|||...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~ 115 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTA 115 (295)
T ss_dssp SSEEEEEECCTTTTHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3556778899999999643
No 450
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=72.11 E-value=1.6 Score=29.53 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=15.9
Q ss_pred hcCCcEEEEccCCchHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~ 64 (130)
..|.-+++.++.|+|||..
T Consensus 4 m~g~~i~~eG~~gsGKsT~ 22 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTN 22 (213)
T ss_dssp -CCEEEEEECSTTSSHHHH
T ss_pred CCceEEEEEcCCCCCHHHH
Confidence 4577899999999999974
No 451
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=71.90 E-value=2.1 Score=29.52 Aligned_cols=18 Identities=22% Similarity=0.254 Sum_probs=14.7
Q ss_pred CCcEEEEccCCchHHHHH
Q psy3307 48 GRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 48 g~~~l~~aptGsGKT~~~ 65 (130)
..-+.+.+|+|||||...
T Consensus 9 ~~~i~i~G~~GsGKsTla 26 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVS 26 (233)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346889999999999643
No 452
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=71.30 E-value=3.2 Score=29.41 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=18.5
Q ss_pred HhHHhcCCcEEEEccCCchHHHH
Q psy3307 42 IPVIISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 42 i~~~~~g~~~l~~aptGsGKT~~ 64 (130)
+-.++.|+-+.+.+|+|+|||..
T Consensus 159 L~~~l~G~i~~l~G~sG~GKSTL 181 (302)
T 2yv5_A 159 LVDYLEGFICILAGPSGVGKSSI 181 (302)
T ss_dssp HHHHTTTCEEEEECSTTSSHHHH
T ss_pred HHhhccCcEEEEECCCCCCHHHH
Confidence 34556788889999999999973
No 453
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=71.11 E-value=2.5 Score=32.90 Aligned_cols=27 Identities=26% Similarity=0.665 Sum_probs=19.9
Q ss_pred hcCCcEEEEccCCchHHHHHHHHHHHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAAFLVPILNQMY 74 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~~~l~~l~~~~ 74 (130)
..|+-+.+.+|+|||||. ++-++..++
T Consensus 367 ~~G~~~~ivG~sGsGKST--Ll~~l~g~~ 393 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKST--IASLITRFY 393 (582)
T ss_dssp CTTCEEEEEECTTSSHHH--HHHHHTTTT
T ss_pred cCCCEEEEECCCCCCHHH--HHHHHhhcc
Confidence 377889999999999997 344444443
No 454
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=71.03 E-value=1.8 Score=31.01 Aligned_cols=14 Identities=29% Similarity=0.408 Sum_probs=12.2
Q ss_pred EEEEccCCchHHHH
Q psy3307 51 VMACAQTGSGKTAA 64 (130)
Q Consensus 51 ~l~~aptGsGKT~~ 64 (130)
+++.++.|||||..
T Consensus 7 ~~i~G~~GaGKTTl 20 (318)
T 1nij_A 7 TLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEESSSSSCHHH
T ss_pred EEEEecCCCCHHHH
Confidence 57899999999974
No 455
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=71.00 E-value=2.7 Score=35.59 Aligned_cols=53 Identities=21% Similarity=0.288 Sum_probs=38.4
Q ss_pred HhcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHH
Q psy3307 45 IISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFA 119 (130)
Q Consensus 45 ~~~g~~~l~~aptGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~ 119 (130)
+..|....+.+-+||||++.. +.+ ..... ..+|||+|+...|.|+++.++.+.
T Consensus 14 ~~~~~~~~l~G~~gs~ka~~~--a~l---~~~~~-----------------~p~lvv~~~~~~A~~l~~el~~f~ 66 (1151)
T 2eyq_A 14 VKAGEQRLLGELTGAACATLV--AEI---AERHA-----------------GPVVLIAPDMQNALRLHDEISQFT 66 (1151)
T ss_dssp CSTTCBCCBCCCCTTHHHHHH--HHH---HHSSS-----------------SEEEEEESSHHHHHHHHHHHGGGC
T ss_pred CCCCCeEEEeCCchHHHHHHH--HHH---HHhhC-----------------CCEEEEeCCHHHHHHHHHHHHhhc
Confidence 445555677889999998743 322 22211 238999999999999999999985
No 456
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=70.97 E-value=2.3 Score=27.65 Aligned_cols=14 Identities=29% Similarity=0.541 Sum_probs=12.4
Q ss_pred cEEEEccCCchHHH
Q psy3307 50 DVMACAQTGSGKTA 63 (130)
Q Consensus 50 ~~l~~aptGsGKT~ 63 (130)
.+.+.|++|+|||.
T Consensus 7 kv~lvG~~g~GKST 20 (199)
T 2f9l_A 7 KVVLIGDSGVGKSN 20 (199)
T ss_dssp EEEEESSTTSSHHH
T ss_pred EEEEECcCCCCHHH
Confidence 47889999999996
No 457
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=70.93 E-value=3.4 Score=30.76 Aligned_cols=26 Identities=4% Similarity=-0.087 Sum_probs=19.4
Q ss_pred ccccCCCcCCCCCHHHHHHHHHCCCC
Q psy3307 7 SLKKQGFDDIQMTEIITNNIALARYD 32 (130)
Q Consensus 7 ~~~~~~f~~l~l~~~i~~~l~~~~~~ 32 (130)
+.++......++++..++.|++.||.
T Consensus 80 ~~~~~~l~~~gi~~~~~~~L~~ag~~ 105 (400)
T 3lda_A 80 FVPIEKLQVNGITMADVKKLRESGLH 105 (400)
T ss_dssp SCBGGGGCCTTCCHHHHHHHHHTTCC
T ss_pred ccCHHHHHhCCCCHHHHHHHHHcCCC
Confidence 34555666777888888888888875
No 458
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=70.76 E-value=4.4 Score=28.39 Aligned_cols=28 Identities=14% Similarity=0.106 Sum_probs=16.4
Q ss_pred cCCcEEEEccCCchHHHHHHHHHHHHHHh
Q psy3307 47 SGRDVMACAQTGSGKTAAFLVPILNQMYE 75 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~~~l~~l~~~~~ 75 (130)
.|..+++.+.+|+||| .+.+-.+..-..
T Consensus 20 ~gs~~li~g~p~~~~~-~l~~qfl~~g~~ 47 (260)
T 3bs4_A 20 HSLILIHEEDASSRGK-DILFYILSRKLK 47 (260)
T ss_dssp TCEEEEEECSGGGCHH-HHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCccHH-HHHHHHHHHHHH
Confidence 4467788867777777 444444443333
No 459
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=70.54 E-value=2.3 Score=33.19 Aligned_cols=19 Identities=37% Similarity=0.461 Sum_probs=16.3
Q ss_pred hcCCcEEEEccCCchHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~ 64 (130)
..|+-+.+.+|+|+|||..
T Consensus 367 ~~Ge~~~ivG~sGsGKSTl 385 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTL 385 (587)
T ss_dssp CTTCEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3678899999999999973
No 460
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=70.52 E-value=1.7 Score=29.44 Aligned_cols=17 Identities=18% Similarity=0.180 Sum_probs=14.2
Q ss_pred CCcEEEEccCCchHHHH
Q psy3307 48 GRDVMACAQTGSGKTAA 64 (130)
Q Consensus 48 g~~~l~~aptGsGKT~~ 64 (130)
++-+++.|+.|||||..
T Consensus 2 ~~~i~~~G~~g~GKtt~ 18 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTF 18 (241)
T ss_dssp CEEEEEEECTTSSHHHH
T ss_pred CeEEEEEcCCCCCHHHH
Confidence 45688999999999973
No 461
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=70.51 E-value=3.1 Score=30.56 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=18.4
Q ss_pred HhHHhcCCcEEEEccCCchHHH
Q psy3307 42 IPVIISGRDVMACAQTGSGKTA 63 (130)
Q Consensus 42 i~~~~~g~~~l~~aptGsGKT~ 63 (130)
+.....|.-+.+.+|+|+|||.
T Consensus 209 L~~~~~G~~~~lvG~sG~GKST 230 (358)
T 2rcn_A 209 LEEALTGRISIFAGQSGVGKSS 230 (358)
T ss_dssp HHHHHTTSEEEEECCTTSSHHH
T ss_pred HHHhcCCCEEEEECCCCccHHH
Confidence 3345688999999999999996
No 462
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=70.45 E-value=8.3 Score=25.85 Aligned_cols=26 Identities=19% Similarity=0.187 Sum_probs=19.9
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHH
Q psy3307 49 RDVMACAQTGSGKTAAFLVPILNQMY 74 (130)
Q Consensus 49 ~~~l~~aptGsGKT~~~~l~~l~~~~ 74 (130)
-.+++..++|.|||.+.+--.+..+-
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g 54 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVG 54 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 48899999999999987555555443
No 463
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=70.34 E-value=1.7 Score=29.71 Aligned_cols=19 Identities=26% Similarity=0.342 Sum_probs=13.7
Q ss_pred hcCCcEEEEccCCchHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~ 64 (130)
..|.-+++.++.|+|||..
T Consensus 23 ~~g~~I~~eG~~GsGKsT~ 41 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTH 41 (227)
T ss_dssp CCCCEEEEECCC---CHHH
T ss_pred cCCeEEEEECCCCCCHHHH
Confidence 4688999999999999974
No 464
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=70.18 E-value=1.9 Score=33.33 Aligned_cols=20 Identities=30% Similarity=0.426 Sum_probs=17.2
Q ss_pred HhcCCcEEEEccCCchHHHH
Q psy3307 45 IISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 45 ~~~g~~~l~~aptGsGKT~~ 64 (130)
+..|.-+.+.+|+|+|||..
T Consensus 44 i~~Ge~~~LvG~NGaGKSTL 63 (538)
T 1yqt_A 44 VKEGMVVGIVGPNGTGKSTA 63 (538)
T ss_dssp CCTTSEEEEECCTTSSHHHH
T ss_pred CCCCCEEEEECCCCCCHHHH
Confidence 45788899999999999973
No 465
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=70.09 E-value=2.4 Score=27.47 Aligned_cols=15 Identities=27% Similarity=0.479 Sum_probs=13.0
Q ss_pred cEEEEccCCchHHHH
Q psy3307 50 DVMACAQTGSGKTAA 64 (130)
Q Consensus 50 ~~l~~aptGsGKT~~ 64 (130)
.+.+.+++|+|||..
T Consensus 31 kv~lvG~~g~GKSTL 45 (191)
T 1oix_A 31 KVVLIGDSGVGKSNL 45 (191)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECcCCCCHHHH
Confidence 578999999999963
No 466
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=70.02 E-value=2.2 Score=29.35 Aligned_cols=19 Identities=21% Similarity=0.419 Sum_probs=16.0
Q ss_pred hcCCcEEEEccCCchHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~ 64 (130)
..|.-+++.++.|||||..
T Consensus 25 ~~~~~i~~eG~~GsGKsT~ 43 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTA 43 (236)
T ss_dssp -CCCEEEEEESTTSCHHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 3578899999999999974
No 467
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=70.01 E-value=4.6 Score=31.41 Aligned_cols=49 Identities=16% Similarity=0.129 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHHHCCCCCC----cHHHHHHHh-----HHhcCCcEEEEccCCchHHHH
Q psy3307 16 IQMTEIITNNIALARYDKP----TPVQKYAIP-----VIISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 16 l~l~~~i~~~l~~~~~~~~----t~~Q~~~i~-----~~~~g~~~l~~aptGsGKT~~ 64 (130)
.+++..-++.+-..|-..| ++.-...+. .+..|..+.+.+++|||||..
T Consensus 328 ~~isgt~ir~~Lr~G~~~p~~f~~peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTL 385 (552)
T 3cr8_A 328 LTLSGEEFQRRMRAGLKIPEWYSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTL 385 (552)
T ss_dssp ECCCHHHHHHHHTTTCCCCTTTSCHHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHH
T ss_pred ccCCHHHHHHHHhcCCCCCccccccchhhhhhhhcccccccceEEEEECCCCChHHHH
Confidence 4566665555545453322 122122222 345788899999999999863
No 468
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=69.86 E-value=2.8 Score=27.72 Aligned_cols=18 Identities=11% Similarity=0.180 Sum_probs=14.8
Q ss_pred CCcEEEEccCCchHHHHH
Q psy3307 48 GRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 48 g~~~l~~aptGsGKT~~~ 65 (130)
+..+.+.++.|||||...
T Consensus 3 ~~~i~i~G~~gsGkst~~ 20 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIA 20 (219)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 356889999999999753
No 469
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=69.67 E-value=2.1 Score=26.38 Aligned_cols=14 Identities=21% Similarity=0.444 Sum_probs=12.3
Q ss_pred cEEEEccCCchHHH
Q psy3307 50 DVMACAQTGSGKTA 63 (130)
Q Consensus 50 ~~l~~aptGsGKT~ 63 (130)
.+++.|++|+|||.
T Consensus 3 ki~v~G~~~~GKSs 16 (161)
T 2dyk_A 3 KVVIVGRPNVGKSS 16 (161)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47889999999995
No 470
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=69.65 E-value=1.9 Score=29.70 Aligned_cols=18 Identities=11% Similarity=0.154 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCchHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~ 64 (130)
++.-+++.|+.|||||..
T Consensus 23 ~~~~I~ieG~~GsGKST~ 40 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTF 40 (263)
T ss_dssp CCEEEEEECSTTSSHHHH
T ss_pred CceEEEEECCCCCCHHHH
Confidence 556789999999999974
No 471
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=69.59 E-value=4 Score=29.71 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=20.1
Q ss_pred hcCCcEEEEccCCchHHHHHHHHHHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAAFLVPILNQM 73 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~~~l~~l~~~ 73 (130)
-.|.-+.+.+|+|+|||.. +-++...
T Consensus 69 ~~Gq~~gIiG~nGaGKTTL--l~~I~g~ 94 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTL--LGMICNG 94 (347)
T ss_dssp ETTCEEEEEECTTSSHHHH--HHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHH--HHHHhcC
Confidence 3888999999999999984 4444444
No 472
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=69.35 E-value=9.5 Score=33.85 Aligned_cols=26 Identities=35% Similarity=0.282 Sum_probs=19.1
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHH
Q psy3307 48 GRDVMACAQTGSGKTAAFLVPILNQM 73 (130)
Q Consensus 48 g~~~l~~aptGsGKT~~~~l~~l~~~ 73 (130)
|+.+++.+++|+|||...+--+...+
T Consensus 34 G~i~lI~G~pGsGKT~LAlqla~~~~ 59 (1706)
T 3cmw_A 34 GRIVEIYGPESSGKTTLTLQVIAAAQ 59 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 68999999999999975443333333
No 473
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=68.44 E-value=1.3 Score=34.26 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=18.0
Q ss_pred hHHhcCCcEEEEccCCchHHHH
Q psy3307 43 PVIISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 43 ~~~~~g~~~l~~aptGsGKT~~ 64 (130)
|....|.-+.+.+|+|+|||..
T Consensus 20 ~~~~~Gei~gLiGpNGaGKSTL 41 (538)
T 3ozx_A 20 PTPKNNTILGVLGKNGVGKTTV 41 (538)
T ss_dssp CCCCTTEEEEEECCTTSSHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHH
Confidence 4455788889999999999974
No 474
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=68.41 E-value=6.7 Score=29.48 Aligned_cols=17 Identities=29% Similarity=0.257 Sum_probs=13.6
Q ss_pred CcEEEEccCCchHHHHH
Q psy3307 49 RDVMACAQTGSGKTAAF 65 (130)
Q Consensus 49 ~~~l~~aptGsGKT~~~ 65 (130)
+-+.+.+++|+|||...
T Consensus 99 ~vi~i~G~~GsGKTT~~ 115 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTA 115 (425)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45778899999999753
No 475
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=68.22 E-value=1.5 Score=30.01 Aligned_cols=21 Identities=14% Similarity=0.298 Sum_probs=14.4
Q ss_pred EEEccCCchHHHHHHHHHHHHHH
Q psy3307 52 MACAQTGSGKTAAFLVPILNQMY 74 (130)
Q Consensus 52 l~~aptGsGKT~~~~l~~l~~~~ 74 (130)
.+.+|+|+|||.. +-++..+.
T Consensus 31 ~i~GpnGsGKSTl--l~~i~g~~ 51 (227)
T 1qhl_A 31 TLSGGNGAGKSTT--MAAFVTAL 51 (227)
T ss_dssp HHHSCCSHHHHHH--HHHHHHHH
T ss_pred EEECCCCCCHHHH--HHHHhccc
Confidence 3579999999974 44444444
No 476
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=68.13 E-value=2.5 Score=32.98 Aligned_cols=19 Identities=42% Similarity=0.564 Sum_probs=16.4
Q ss_pred hcCCcEEEEccCCchHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~ 64 (130)
..|+-+.+.+|+|||||..
T Consensus 379 ~~G~~~~ivG~sGsGKSTl 397 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTI 397 (598)
T ss_dssp CTTCEEEEECCTTSSTTHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3678899999999999973
No 477
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=68.11 E-value=10 Score=27.61 Aligned_cols=23 Identities=9% Similarity=0.021 Sum_probs=16.4
Q ss_pred cEEEEccCCchHHHHHHHHHHHHH
Q psy3307 50 DVMACAQTGSGKTAAFLVPILNQM 73 (130)
Q Consensus 50 ~~l~~aptGsGKT~~~~l~~l~~~ 73 (130)
-+.+.+|+|+|||... +.++...
T Consensus 30 iteI~G~pGsGKTtL~-Lq~~~~~ 52 (333)
T 3io5_A 30 LLILAGPSKSFKSNFG-LTMVSSY 52 (333)
T ss_dssp EEEEEESSSSSHHHHH-HHHHHHH
T ss_pred eEEEECCCCCCHHHHH-HHHHHHH
Confidence 5789999999999754 3333333
No 478
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=68.07 E-value=1.9 Score=30.73 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=15.6
Q ss_pred cEEEEccCCchHHHHHHHHHHHH
Q psy3307 50 DVMACAQTGSGKTAAFLVPILNQ 72 (130)
Q Consensus 50 ~~l~~aptGsGKT~~~~l~~l~~ 72 (130)
-.++.+++|+|||.. +-++..
T Consensus 26 ~~~i~G~NGsGKS~l--l~ai~~ 46 (322)
T 1e69_A 26 VTAIVGPNGSGKSNI--IDAIKW 46 (322)
T ss_dssp EEEEECCTTTCSTHH--HHHHHH
T ss_pred cEEEECCCCCcHHHH--HHHHHH
Confidence 668899999999973 444443
No 479
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=67.98 E-value=2.7 Score=33.08 Aligned_cols=20 Identities=25% Similarity=0.298 Sum_probs=17.2
Q ss_pred HhcCCcEEEEccCCchHHHH
Q psy3307 45 IISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 45 ~~~g~~~l~~aptGsGKT~~ 64 (130)
+..|.-+.+.+|+|+|||..
T Consensus 100 ~~~Gei~~LvGpNGaGKSTL 119 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTA 119 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHH
T ss_pred CCCCCEEEEECCCCChHHHH
Confidence 44788999999999999984
No 480
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=67.93 E-value=4.4 Score=30.50 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=21.0
Q ss_pred HhcCCcEEEEccCCchHHHHHHHHHHHHHH
Q psy3307 45 IISGRDVMACAQTGSGKTAAFLVPILNQMY 74 (130)
Q Consensus 45 ~~~g~~~l~~aptGsGKT~~~~l~~l~~~~ 74 (130)
+-.|.-+.+.+|+|+|||.. +-++....
T Consensus 154 i~~Gq~~~IvG~sGsGKSTL--l~~Iag~~ 181 (438)
T 2dpy_A 154 VGRGQRMGLFAGSGVGKSVL--LGMMARYT 181 (438)
T ss_dssp CBTTCEEEEEECTTSSHHHH--HHHHHHHS
T ss_pred ecCCCEEEEECCCCCCHHHH--HHHHhccc
Confidence 34788999999999999974 45555443
No 481
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=67.80 E-value=8.5 Score=32.27 Aligned_cols=54 Identities=19% Similarity=0.358 Sum_probs=32.5
Q ss_pred CCcCCCC-CHHHHHHHHHCCCCC--C--cHHHHHHHhHHh---cCCcEEEEccCCchHHHHH
Q psy3307 12 GFDDIQM-TEIITNNIALARYDK--P--TPVQKYAIPVII---SGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 12 ~f~~l~l-~~~i~~~l~~~~~~~--~--t~~Q~~~i~~~~---~g~~~l~~aptGsGKT~~~ 65 (130)
.|..+++ +++.++..+...... | ..+=..|+..++ ....+++.|.+|+|||.+.
T Consensus 128 Pyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~ 189 (1010)
T 1g8x_A 128 PFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENT 189 (1010)
T ss_dssp CSSCCSCCSHHHHHHHTTCCTTTSCCCHHHHHHHHHHHHHHHTCCEEEEEEESTTSSHHHHH
T ss_pred CCccccCCCHHHHHHhcCCCccCCCccHHHHHHHHHHHHHhcCCCeEEEEeCCCCCCcchHH
Confidence 4556664 566666654433322 2 233344554444 3358999999999999874
No 482
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=67.68 E-value=2.4 Score=26.22 Aligned_cols=14 Identities=14% Similarity=0.378 Sum_probs=12.5
Q ss_pred cEEEEccCCchHHH
Q psy3307 50 DVMACAQTGSGKTA 63 (130)
Q Consensus 50 ~~l~~aptGsGKT~ 63 (130)
.+++.|++|+|||.
T Consensus 7 ~i~v~G~~~~GKss 20 (168)
T 1z2a_A 7 KMVVVGNGAVGKSS 20 (168)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECcCCCCHHH
Confidence 57899999999996
No 483
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=67.30 E-value=2.6 Score=30.41 Aligned_cols=19 Identities=26% Similarity=0.426 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCchHHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~~ 65 (130)
.|+-+++.|+.|+|||...
T Consensus 146 ~g~gvli~G~sG~GKStla 164 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECA 164 (312)
T ss_dssp TTEEEEEEESSSSSHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHH
Confidence 5678999999999997543
No 484
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=67.18 E-value=2.9 Score=32.90 Aligned_cols=20 Identities=35% Similarity=0.448 Sum_probs=17.2
Q ss_pred HhcCCcEEEEccCCchHHHH
Q psy3307 45 IISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 45 ~~~g~~~l~~aptGsGKT~~ 64 (130)
+..|.-+.+.+|+|+|||..
T Consensus 114 i~~Ge~~~LiG~NGsGKSTL 133 (607)
T 3bk7_A 114 VKDGMVVGIVGPNGTGKTTA 133 (607)
T ss_dssp CCTTSEEEEECCTTSSHHHH
T ss_pred CCCCCEEEEECCCCChHHHH
Confidence 45788899999999999973
No 485
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=67.09 E-value=3.1 Score=26.61 Aligned_cols=15 Identities=27% Similarity=0.472 Sum_probs=13.5
Q ss_pred CcEEEEccCCchHHH
Q psy3307 49 RDVMACAQTGSGKTA 63 (130)
Q Consensus 49 ~~~l~~aptGsGKT~ 63 (130)
..+++.|++|+|||.
T Consensus 49 ~~i~vvG~~g~GKSs 63 (193)
T 2ged_A 49 PSIIIAGPQNSGKTS 63 (193)
T ss_dssp CEEEEECCTTSSHHH
T ss_pred CEEEEECCCCCCHHH
Confidence 478999999999995
No 486
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=66.87 E-value=3.1 Score=27.28 Aligned_cols=16 Identities=25% Similarity=0.418 Sum_probs=13.8
Q ss_pred CcEEEEccCCchHHHH
Q psy3307 49 RDVMACAQTGSGKTAA 64 (130)
Q Consensus 49 ~~~l~~aptGsGKT~~ 64 (130)
..+++.|++|+|||..
T Consensus 13 ~~i~~~G~~g~GKTsl 28 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSL 28 (218)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4789999999999953
No 487
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=66.87 E-value=5.8 Score=28.12 Aligned_cols=17 Identities=29% Similarity=0.389 Sum_probs=13.5
Q ss_pred CcEEEEccCCchHHHHH
Q psy3307 49 RDVMACAQTGSGKTAAF 65 (130)
Q Consensus 49 ~~~l~~aptGsGKT~~~ 65 (130)
+-+.+.+++|+|||...
T Consensus 99 ~vi~i~G~~G~GKTT~~ 115 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTA 115 (297)
T ss_dssp EEEEEECSSCSSTTHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35678899999999754
No 488
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=66.87 E-value=2.6 Score=32.83 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=19.4
Q ss_pred hcCCcEEEEccCCchHHHHHHHHHHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAAFLVPILNQM 73 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~~~l~~l~~~ 73 (130)
..|+-+.+.+|+|+|||. ++-++..+
T Consensus 368 ~~G~~~~ivG~sGsGKST--Ll~~l~g~ 393 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKST--VLSLLLRL 393 (595)
T ss_dssp CTTCEEEEECCTTSSSTH--HHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHH--HHHHHhcC
Confidence 367889999999999997 34444443
No 489
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=66.56 E-value=2.5 Score=26.18 Aligned_cols=14 Identities=14% Similarity=0.380 Sum_probs=12.5
Q ss_pred cEEEEccCCchHHH
Q psy3307 50 DVMACAQTGSGKTA 63 (130)
Q Consensus 50 ~~l~~aptGsGKT~ 63 (130)
.+++.|++|+|||.
T Consensus 5 ~i~v~G~~~~GKss 18 (170)
T 1ek0_A 5 KLVLLGEAAVGKSS 18 (170)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 57899999999996
No 490
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=66.50 E-value=7.5 Score=35.07 Aligned_cols=27 Identities=33% Similarity=0.255 Sum_probs=20.3
Q ss_pred cCCcEEEEccCCchHHHHHHHHHHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAAFLVPILNQM 73 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~~~l~~l~~~ 73 (130)
.|+++++.+|+|+|||...+.-+.+..
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~ 1106 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQ 1106 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 568999999999999986544444433
No 491
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=66.41 E-value=2.5 Score=26.21 Aligned_cols=14 Identities=36% Similarity=0.529 Sum_probs=12.6
Q ss_pred cEEEEccCCchHHH
Q psy3307 50 DVMACAQTGSGKTA 63 (130)
Q Consensus 50 ~~l~~aptGsGKT~ 63 (130)
.+++.|++|+|||.
T Consensus 8 ~i~v~G~~~~GKSs 21 (170)
T 1z0j_A 8 KVCLLGDTGVGKSS 21 (170)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECcCCCCHHH
Confidence 68899999999995
No 492
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=66.25 E-value=5 Score=30.75 Aligned_cols=25 Identities=12% Similarity=0.098 Sum_probs=17.7
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHh
Q psy3307 49 RDVMACAQTGSGKTAAFLVPILNQMYE 75 (130)
Q Consensus 49 ~~~l~~aptGsGKT~~~~l~~l~~~~~ 75 (130)
.-+.+.+|+|+|||.. +-++..+..
T Consensus 30 e~~~liG~nGsGKSTL--l~~l~Gl~~ 54 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTT--MAGFVTALI 54 (483)
T ss_dssp SEEEEECCTTSSHHHH--HHHHHHHHC
T ss_pred ceEEEECCCCCcHHHH--HHHHhcCCC
Confidence 4567899999999973 445555443
No 493
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=66.21 E-value=3.1 Score=32.91 Aligned_cols=19 Identities=32% Similarity=0.391 Sum_probs=16.2
Q ss_pred cCCcEEEEccCCchHHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~~ 65 (130)
.|.-+.+.+|+|||||...
T Consensus 347 ~Ge~vaIiGpnGsGKSTLl 365 (670)
T 3ux8_A 347 LGTFVAVTGVSGSGKSTLV 365 (670)
T ss_dssp TTSEEEEECSTTSSHHHHH
T ss_pred CCCEEEEEeeCCCCHHHHH
Confidence 5677899999999999764
No 494
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=65.74 E-value=3.4 Score=25.27 Aligned_cols=15 Identities=27% Similarity=0.474 Sum_probs=12.8
Q ss_pred cEEEEccCCchHHHH
Q psy3307 50 DVMACAQTGSGKTAA 64 (130)
Q Consensus 50 ~~l~~aptGsGKT~~ 64 (130)
.+++.|++|+|||..
T Consensus 5 ~i~v~G~~~~GKssl 19 (166)
T 2ce2_X 5 KLVVVGAGGVGKSAL 19 (166)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578999999999963
No 495
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=65.73 E-value=5.2 Score=28.28 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=16.9
Q ss_pred HHhcCCcEEEEccCCchHHH
Q psy3307 44 VIISGRDVMACAQTGSGKTA 63 (130)
Q Consensus 44 ~~~~g~~~l~~aptGsGKT~ 63 (130)
.+..|.-+.+.+|+|+|||.
T Consensus 165 ~~l~geiv~l~G~sG~GKST 184 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSS 184 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHH
T ss_pred HHhcCCeEEEECCCCCcHHH
Confidence 45577888999999999986
No 496
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=65.61 E-value=2.8 Score=33.11 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=16.5
Q ss_pred hcCCcEEEEccCCchHHHH
Q psy3307 46 ISGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 46 ~~g~~~l~~aptGsGKT~~ 64 (130)
..|.-+.+.+|+|+|||..
T Consensus 42 ~~Ge~~~liGpNGaGKSTL 60 (670)
T 3ux8_A 42 PRGKLVVLTGLSGSGKSSL 60 (670)
T ss_dssp ETTSEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3677889999999999986
No 497
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=65.57 E-value=2.7 Score=25.89 Aligned_cols=14 Identities=36% Similarity=0.548 Sum_probs=12.6
Q ss_pred cEEEEccCCchHHH
Q psy3307 50 DVMACAQTGSGKTA 63 (130)
Q Consensus 50 ~~l~~aptGsGKT~ 63 (130)
.+++.|++|+|||.
T Consensus 5 ~i~v~G~~~~GKSs 18 (167)
T 1kao_A 5 KVVVLGSGGVGKSA 18 (167)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 57899999999995
No 498
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=65.51 E-value=2.8 Score=26.00 Aligned_cols=14 Identities=21% Similarity=0.582 Sum_probs=12.5
Q ss_pred cEEEEccCCchHHH
Q psy3307 50 DVMACAQTGSGKTA 63 (130)
Q Consensus 50 ~~l~~aptGsGKT~ 63 (130)
.+++.|++|+|||.
T Consensus 5 ~i~v~G~~~~GKss 18 (170)
T 1g16_A 5 KILLIGDSGVGKSC 18 (170)
T ss_dssp EEEEEESTTSSHHH
T ss_pred EEEEECcCCCCHHH
Confidence 57899999999995
No 499
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=65.22 E-value=8.6 Score=32.40 Aligned_cols=54 Identities=15% Similarity=0.237 Sum_probs=33.9
Q ss_pred CCcCCC-C-CHHHHHHHHHCCCCC--C--cHHHHHHHhHHh---cCCcEEEEccCCchHHHHH
Q psy3307 12 GFDDIQ-M-TEIITNNIALARYDK--P--TPVQKYAIPVII---SGRDVMACAQTGSGKTAAF 65 (130)
Q Consensus 12 ~f~~l~-l-~~~i~~~l~~~~~~~--~--t~~Q~~~i~~~~---~g~~~l~~aptGsGKT~~~ 65 (130)
.|.+++ + +++.++..+...... | ..+=..|...+. ....+++.|.+|+|||.+.
T Consensus 99 Pyk~lp~iY~~~~~~~Y~g~~~~~lpPHIfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTest 161 (1052)
T 4anj_A 99 PYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENT 161 (1052)
T ss_dssp CSSCCTTTTSHHHHHHHTTCCBTTBCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred CCCCccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHH
Confidence 356664 4 677777665443322 2 334444554444 3458999999999999874
No 500
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=64.88 E-value=2.9 Score=30.23 Aligned_cols=18 Identities=22% Similarity=0.250 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCchHHHH
Q psy3307 47 SGRDVMACAQTGSGKTAA 64 (130)
Q Consensus 47 ~g~~~l~~aptGsGKT~~ 64 (130)
.|.-+.+.+++|+|||..
T Consensus 54 ~g~~v~i~G~~GaGKSTL 71 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTT 71 (337)
T ss_dssp CSEEEEEECCTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 567889999999999974
Done!