BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3308
(838 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 341 bits (874), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 177/377 (46%), Positives = 254/377 (67%), Gaps = 17/377 (4%)
Query: 428 TPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDA 487
TPLH+A+ IV+ LL+ GAS + + +TPLH+A+R G+ ++A LLQ+ A V+A
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 488 PTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQK 547
KD T LH +A+ G + +L E+ A+ T G TPLH+AA+ G ++ LL+K
Sbjct: 76 KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 135
Query: 548 DAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKN 607
+A S TKKGFTPLH+AAKYG++++A++LL++DA ++ GKN
Sbjct: 136 EA-----------------SQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKN 178
Query: 608 GVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKP 667
G+TPLHVA H+++ ++ LLL RG SPH+ A NGYTPLHIAAK+NQ+++A +LL+Y
Sbjct: 179 GLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA 238
Query: 668 NAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITM 727
NAES G TPLHL+AQEGH +M +LL+ A + K+GLTPLHL AQE V VA + +
Sbjct: 239 NAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLI 298
Query: 728 FNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVL 787
+G +D T+ G+TPLH+ASH+G + +V++L+++ A+VNA T LGY+PLHQA+QQG
Sbjct: 299 KHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTD 358
Query: 788 IIDLLLGAGAQPNATTN 804
I+ LLL GA PN ++
Sbjct: 359 IVTLLLKNGASPNEVSS 375
Score = 248 bits (634), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 154/400 (38%), Positives = 217/400 (54%), Gaps = 59/400 (14%)
Query: 335 LTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVD 394
LTPLHVASFMG + I LLQ GA+P+ + V+ ETPLH+AARA T++ + LL+N A V+
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 74
Query: 395 ARAREDQTPLHVASRLRRFS---------------------------------------- 414
A+A++DQTPLH A+R+ +
Sbjct: 75 AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE 134
Query: 415 -SASQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGD 473
ASQ+ +T+ +G TPLH+AA+ + + +LL A +A + TPLHVA N D
Sbjct: 135 KEASQACMTK-KGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLD 193
Query: 474 IASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAA 533
I LLL G S +P +GYT LHI+AK+ Q EVA L + G S A + +G TPLHLAA
Sbjct: 194 IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAA 253
Query: 534 KYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQM 593
+ G ++ +LL K A G + + K G TPLHL A+ G + +A +
Sbjct: 254 QEGHAEMVALLLSKQA----NGNLGN-------------KSGLTPLHLVAQEGHVPVADV 296
Query: 594 LLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQ 653
L++ VD+ + G TPLHVASHY + + LL A +A K GY+PLH AA++
Sbjct: 297 LIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGH 356
Query: 654 MDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLL 693
DI T LL+ A PN S G TPL ++ + G+ ++ +L
Sbjct: 357 TDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVL 396
Score = 248 bits (633), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 152/391 (38%), Positives = 218/391 (55%), Gaps = 17/391 (4%)
Query: 96 FTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIE 155
TPL++A+ H +V+ LL +G + ++ TPLH+A + G + + L+ A +
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 74
Query: 156 AKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIY 215
AK +D TPLHCAAR GH N++ +L+E A T G PLH+A++ H L+
Sbjct: 75 AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE 134
Query: 216 HGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKS 275
A +T T LHVA+ G VRVA+ LL+R A PNA NG TPLH+A
Sbjct: 135 KEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAV------- 187
Query: 276 SHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGL 335
H N++ + K LL R P++ A NG+TPLHIA K+N+ +V LL+YG S A + G+
Sbjct: 188 -HHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGV 246
Query: 336 TPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDA 395
TPLH+A+ G + LL A + G TPLHL A+ + +L+++G VDA
Sbjct: 247 TPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDA 306
Query: 396 RAREDQTPLHVAS-----RLRRF---SSASQSALTRVRGETPLHLAARANQTDIVRILLR 447
R TPLHVAS +L +F A +A T++ G +PLH AA+ TDIV +LL+
Sbjct: 307 TTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKL-GYSPLHQAAQQGHTDIVTLLLK 365
Query: 448 NGASVDARAREDQTPLHVASRLGNGDIASLL 478
NGAS + + + TPL +A RLG + +L
Sbjct: 366 NGASPNEVSSDGTTPLAIAKRLGYISVTDVL 396
Score = 225 bits (573), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 137/376 (36%), Positives = 203/376 (53%), Gaps = 30/376 (7%)
Query: 461 TPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITA 520
TPLHVAS +G+ I LLQ GAS + T LH++A+ G EVA L ++ A + A
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 521 TTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLH 580
K TPLH AA+ G + ++LL E+ A+ T G TPLH
Sbjct: 76 KAKDDQTPLHCAARIGHTNMVKLLL-----------------ENNANPNLATTAGHTPLH 118
Query: 581 LAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKN 640
+AA+ G ++ LL+K+A K G TPLHVA+ Y VA LLL+R A P+A KN
Sbjct: 119 IAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKN 178
Query: 641 GYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATV 700
G TPLH+A N +DI LL P++ + G+TPLH++A++ +++ L+++G +
Sbjct: 179 GLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA 238
Query: 701 SHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLV 760
+ ++ G+TPLHL AQE + + + A + K+G TPLH+ + G + + L+
Sbjct: 239 NAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLI 298
Query: 761 ENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNLFC------------- 807
++G V+ATT +GYTPLH AS G + ++ LL A NA T L
Sbjct: 299 KHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTD 358
Query: 808 CATILVKNGAEIDPVT 823
T+L+KNGA + V+
Sbjct: 359 IVTLLLKNGASPNEVS 374
Score = 220 bits (560), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 140/391 (35%), Positives = 214/391 (54%), Gaps = 17/391 (4%)
Query: 129 ITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALY 188
+TPLHVA G + +V+ L+ +GA+ TPLH AAR+GH V L++ A +
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 74
Query: 189 SKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLD 248
+K K+ PLH A++ H ++L+ + A + T T LH+A+ GHV LL+
Sbjct: 75 AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE 134
Query: 249 RKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIA 308
++A GFTPLH+A K + V VA+ LL+R A PNA NG TPLH+A
Sbjct: 135 KEASQACMTKKGFTPLHVAAKYGK--------VRVAELLLERDAHPNAAGKNGLTPLHVA 186
Query: 309 CKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGE 368
N +V+LLL G S + +G TPLH+A+ + +A LLQ G + + +V+G
Sbjct: 187 VHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGV 246
Query: 369 TPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSAS--------QSA 420
TPLHLAA+ ++V +LL A+ + + TPLH+ ++ A A
Sbjct: 247 TPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDA 306
Query: 421 LTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQ 480
TR+ G TPLH+A+ +V+ LL++ A V+A+ + +PLH A++ G+ DI +LLL+
Sbjct: 307 TTRM-GYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK 365
Query: 481 HGASVDAPTKDGYTALHISAKEGQDEVASIL 511
+GAS + + DG T L I+ + G V +L
Sbjct: 366 NGASPNEVSSDGTTPLAIAKRLGYISVTDVL 396
Score = 149 bits (377), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 90/248 (36%), Positives = 135/248 (54%), Gaps = 8/248 (3%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
G+ VA++L++ A N NG TPL++A N+ +V+ LL +GG+ + TPL
Sbjct: 157 GKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPL 216
Query: 133 HVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTK 192
H+A K +V + L+ G + A++ G+TPLH AA+ GH ++ +L+ K A K
Sbjct: 217 HIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNK 276
Query: 193 NGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKAD 252
+GL PLH+ +Q H VLI HG VD T T LHVASH G++++ K LL +AD
Sbjct: 277 SGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD 336
Query: 253 PNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKN 312
NA+ G++PLH A ++ H + LL A PN + +G TPL IA +
Sbjct: 337 VNAKTKLGYSPLHQAAQQ--------GHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLG 388
Query: 313 RYKVVELL 320
V ++L
Sbjct: 389 YISVTDVL 396
Score = 149 bits (376), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 89/228 (39%), Positives = 128/228 (56%)
Query: 576 FTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPH 635
TPLH+A+ G + I + LLQ+ A + TPLH+A+ H VA LL A +
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 74
Query: 636 AVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIE 695
A AK+ TPLH AA+ ++ LLE NA PN + AG TPLH++A+EGH + L+E
Sbjct: 75 AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE 134
Query: 696 HGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNM 755
A+ + K G TPLH+ A+ KV VA + + A + K G TPLH+A H L++
Sbjct: 135 KEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDI 194
Query: 756 VRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATT 803
V+ L+ G + ++ GYTPLH A++Q +V + LL G NA +
Sbjct: 195 VKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAES 242
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/162 (43%), Positives = 102/162 (62%), Gaps = 17/162 (10%)
Query: 433 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDG 492
AARA Q D VRIL+ NGA V+A+ ++ TPLH+A+R G+ +I +LL+ GA V+A KDG
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 493 YTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVD 552
YT LH++A+EG E+ +L ++GA + A K G+TPLHLAA+ G ++I ++LL+
Sbjct: 69 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK------ 122
Query: 553 SQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 594
+GA + A K G TP LA + G IA++L
Sbjct: 123 -----------AGADVNAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 125 bits (314), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 101/171 (59%), Gaps = 26/171 (15%)
Query: 374 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLA 433
AARA Q D VRIL+ NGA V+A+ ++ G TPLHLA
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKD--------------------------GYTPLHLA 42
Query: 434 ARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGY 493
AR +IV +LL+ GA V+A+ ++ TPLH+A+R G+ +I +LL+ GA V+A KDGY
Sbjct: 43 AREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGY 102
Query: 494 TALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
T LH++A+EG E+ +L ++GA + A K G TP LA + G IA++L
Sbjct: 103 TPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 119 bits (299), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/141 (41%), Positives = 90/141 (63%)
Query: 553 SQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPL 612
Q IL +GA + A K G+TPLHLAA+ G ++I ++LL+ A V+++ K+G TPL
Sbjct: 13 GQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPL 72
Query: 613 HVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESK 672
H+A+ H + +LL GA +A K+GYTPLH+AA++ ++I LL+ A NA+ K
Sbjct: 73 HLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDK 132
Query: 673 AGFTPLHLSAQEGHTDMSSLL 693
G TP L+ +EGH D++ +L
Sbjct: 133 FGKTPFDLAIREGHEDIAEVL 153
Score = 115 bits (289), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 89/142 (62%)
Query: 72 TGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITP 131
GQ++ +IL+ NGA +N + +G+TPL++AA+E H +V LL G + + TP
Sbjct: 12 AGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTP 71
Query: 132 LHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKT 191
LH+A + G + +VE+L+ GA++ AK +DG TPLH AAR GH ++++L++ GA + ++
Sbjct: 72 LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 131
Query: 192 KNGLAPLHMASQGDHEAATRVL 213
K G P +A + HE VL
Sbjct: 132 KFGKTPFDLAIREGHEDIAEVL 153
Score = 115 bits (288), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 95/162 (58%), Gaps = 17/162 (10%)
Query: 499 SAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVA 558
+A+ GQD+ IL +GA + A K G+TPLHLAA+ G ++I ++LL+
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK------------ 56
Query: 559 SILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHY 618
+GA + A K G+TPLHLAA+ G ++I ++LL+ A V+++ K+G TPLH+A+
Sbjct: 57 -----AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAARE 111
Query: 619 DHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTL 660
H + +LL GA +A K G TP +A ++ DIA L
Sbjct: 112 GHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 113 bits (283), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 90/145 (62%)
Query: 648 AAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNG 707
AA+ Q D L+ A NA+ K G+TPLHL+A+EGH ++ +L++ GA V+ + K+G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 708 LTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVN 767
TPLHL A+E + + + + GA+++ K G+TPLH+A+ G L +V L++ GA+VN
Sbjct: 69 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 128
Query: 768 ATTNLGYTPLHQASQQGRVLIIDLL 792
A G TP A ++G I ++L
Sbjct: 129 AQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 92/144 (63%)
Query: 582 AAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNG 641
AA+ G+ ++L+ A V+++ K+G TPLH+A+ H + +LL GA +A K+G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 642 YTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVS 701
YTPLH+AA++ ++I LL+ A NA+ K G+TPLHL+A+EGH ++ +L++ GA V+
Sbjct: 69 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 128
Query: 702 HQAKNGLTPLHLCAQEDKVNVATI 725
Q K G TP L +E ++A +
Sbjct: 129 AQDKFGKTPFDLAIREGHEDIAEV 152
Score = 107 bits (266), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 85/134 (63%)
Query: 626 LLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEG 685
+L+ GA +A K+GYTPLH+AA++ ++I LL+ A NA+ K G+TPLHL+A+EG
Sbjct: 20 ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREG 79
Query: 686 HTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLH 745
H ++ +L++ GA V+ + K+G TPLHL A+E + + + + GA+++ K G TP
Sbjct: 80 HLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFD 139
Query: 746 IASHFGQLNMVRYL 759
+A G ++ L
Sbjct: 140 LAIREGHEDIAEVL 153
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 86/153 (56%), Gaps = 8/153 (5%)
Query: 234 ASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKAD 293
A+ G + L+ AD NA+ +G+TPLH+A ++ H+ + + LL AD
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREG--------HLEIVEVLLKAGAD 60
Query: 294 PNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFL 353
NA+ +G+TPLH+A ++ ++VE+LLK GA + A + G TPLH+A+ G + I L
Sbjct: 61 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 120
Query: 354 LQAGAAPDTATVRGETPLHLAARANQTDIVRIL 386
L+AGA + G+TP LA R DI +L
Sbjct: 121 LKAGADVNAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 103 bits (256), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 80/125 (64%)
Query: 681 SAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAG 740
+A+ G D +L+ +GA V+ + K+G TPLHL A+E + + + + GA+++ K G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 741 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 800
+TPLH+A+ G L +V L++ GA+VNA GYTPLH A+++G + I+++LL AGA N
Sbjct: 69 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 128
Query: 801 ATTNL 805
A
Sbjct: 129 AQDKF 133
Score = 102 bits (255), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 79/125 (63%)
Query: 285 KTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFM 344
+ L+ AD NA+ +G+TPLH+A ++ ++VE+LLK GA + A + G TPLH+A+
Sbjct: 19 RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAARE 78
Query: 345 GCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPL 404
G + I LL+AGA + G TPLHLAAR +IV +LL+ GA V+A+ + +TP
Sbjct: 79 GHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPF 138
Query: 405 HVASR 409
+A R
Sbjct: 139 DLAIR 143
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 83/136 (61%)
Query: 135 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNG 194
A + G+ V +L++ GA++ AK +DG TPLH AAR GH ++++L++ GA + +K K+G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 195 LAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPN 254
PLH+A++ H VL+ GA V+ D T LH+A+ GH+ + + LL AD N
Sbjct: 69 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 128
Query: 255 ARALNGFTPLHIACKK 270
A+ G TP +A ++
Sbjct: 129 AQDKFGKTPFDLAIRE 144
Score = 99.4 bits (246), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 85/148 (57%)
Query: 99 LYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKT 158
L AA+ D VR L++ G + + TPLH+A + G + +VE+L+ GA++ AK
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 159 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGA 218
+DG TPLH AAR GH ++++L++ GA + +K K+G PLH+A++ H VL+ GA
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 219 GVDEITVDYLTALHVASHCGHVRVAKTL 246
V+ T +A GH +A+ L
Sbjct: 126 DVNAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 90/156 (57%), Gaps = 8/156 (5%)
Query: 201 ASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNG 260
A++ + R+L+ +GA V+ D T LH+A+ GH+ + + LL AD NA+ +G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 261 FTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELL 320
+TPLH+A ++ H+ + + LL AD NA+ +G+TPLH+A ++ ++VE+L
Sbjct: 69 YTPLHLAAREG--------HLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 120
Query: 321 LKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQA 356
LK GA + A + G TP +A G +IA L +A
Sbjct: 121 LKAGADVNAQDKFGKTPFDLAIREGHEDIAEVLQKA 156
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 89/171 (52%), Gaps = 26/171 (15%)
Query: 308 ACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRG 367
A + + V +L+ GA + A + G TPLH+A+ G + I LL+AGA + G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 368 ETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGE 427
TPLHLAAR +IV +LL+ GA V+A+ ++ TP
Sbjct: 69 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTP------------------------ 104
Query: 428 TPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLL 478
LHLAAR +IV +LL+ GA V+A+ + +TP +A R G+ DIA +L
Sbjct: 105 --LHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVL 153
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/162 (43%), Positives = 101/162 (62%), Gaps = 17/162 (10%)
Query: 433 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDG 492
AARA Q D VRIL+ NGA V+A+ ++ TPLH+A+R G+ +I +LL+ GA V+A KDG
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 493 YTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVD 552
YT LH++A+EG E+ +L ++GA + A K G+TPLHLAA+ G ++I ++LL+
Sbjct: 69 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK------ 122
Query: 553 SQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 594
+GA + A K G TP LA G IA++L
Sbjct: 123 -----------AGADVNAQDKFGKTPFDLAIDNGNEDIAEVL 153
Score = 124 bits (312), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 100/171 (58%), Gaps = 26/171 (15%)
Query: 374 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLA 433
AARA Q D VRIL+ NGA V+A+ ++ G TPLHLA
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKD--------------------------GYTPLHLA 42
Query: 434 ARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGY 493
AR +IV +LL+ GA V+A+ ++ TPLH+A+R G+ +I +LL+ GA V+A KDGY
Sbjct: 43 AREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGY 102
Query: 494 TALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
T LH++A+EG E+ +L ++GA + A K G TP LA G IA++L
Sbjct: 103 TPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVL 153
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 93/162 (57%), Gaps = 17/162 (10%)
Query: 499 SAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVA 558
+A+ GQD+ IL +GA + A K G+TPLHLAA+ G ++I ++LL+
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK------------ 56
Query: 559 SILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHY 618
+GA + A K G+TPLHLAA+ G ++I ++LL+ A V+++ K+G TPLH+A+
Sbjct: 57 -----AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAARE 111
Query: 619 DHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTL 660
H + +LL GA +A K G TP +A DIA L
Sbjct: 112 GHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVL 153
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 88/141 (62%)
Query: 553 SQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPL 612
Q IL +GA + A K G+TPLHLAA+ G ++I ++LL+ A V+++ K+G TPL
Sbjct: 13 GQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPL 72
Query: 613 HVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESK 672
H+A+ H + +LL GA +A K+GYTPLH+AA++ ++I LL+ A NA+ K
Sbjct: 73 HLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDK 132
Query: 673 AGFTPLHLSAQEGHTDMSSLL 693
G TP L+ G+ D++ +L
Sbjct: 133 FGKTPFDLAIDNGNEDIAEVL 153
Score = 113 bits (282), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 88/142 (61%)
Query: 72 TGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITP 131
GQ++ +IL+ NGA +N + +G+TPL++AA+E H +V LL G + + TP
Sbjct: 12 AGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTP 71
Query: 132 LHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKT 191
LH+A + G + +VE+L+ GA++ AK +DG TPLH AAR GH ++++L++ GA + ++
Sbjct: 72 LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 131
Query: 192 KNGLAPLHMASQGDHEAATRVL 213
K G P +A +E VL
Sbjct: 132 KFGKTPFDLAIDNGNEDIAEVL 153
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 88/145 (60%)
Query: 648 AAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNG 707
AA+ Q D L+ A NA+ K G+TPLHL+A+EGH ++ +L++ GA V+ + K+G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 708 LTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVN 767
TPLHL A+E + + + + GA+++ K G+TPLH+A+ G L +V L++ GA+VN
Sbjct: 69 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 128
Query: 768 ATTNLGYTPLHQASQQGRVLIIDLL 792
A G TP A G I ++L
Sbjct: 129 AQDKFGKTPFDLAIDNGNEDIAEVL 153
Score = 108 bits (271), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 90/144 (62%)
Query: 582 AAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNG 641
AA+ G+ ++L+ A V+++ K+G TPLH+A+ H + +LL GA +A K+G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 642 YTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVS 701
YTPLH+AA++ ++I LL+ A NA+ K G+TPLHL+A+EGH ++ +L++ GA V+
Sbjct: 69 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 128
Query: 702 HQAKNGLTPLHLCAQEDKVNVATI 725
Q K G TP L ++A +
Sbjct: 129 AQDKFGKTPFDLAIDNGNEDIAEV 152
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 85/134 (63%)
Query: 626 LLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEG 685
+L+ GA +A K+GYTPLH+AA++ ++I LL+ A NA+ K G+TPLHL+A+EG
Sbjct: 20 ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREG 79
Query: 686 HTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLH 745
H ++ +L++ GA V+ + K+G TPLHL A+E + + + + GA+++ K G TP
Sbjct: 80 HLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFD 139
Query: 746 IASHFGQLNMVRYL 759
+A G ++ L
Sbjct: 140 LAIDNGNEDIAEVL 153
Score = 102 bits (255), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 80/125 (64%)
Query: 681 SAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAG 740
+A+ G D +L+ +GA V+ + K+G TPLHL A+E + + + + GA+++ K G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 741 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 800
+TPLH+A+ G L +V L++ GA+VNA GYTPLH A+++G + I+++LL AGA N
Sbjct: 69 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 128
Query: 801 ATTNL 805
A
Sbjct: 129 AQDKF 133
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 78/123 (63%)
Query: 285 KTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFM 344
+ L+ AD NA+ +G+TPLH+A ++ ++VE+LLK GA + A + G TPLH+A+
Sbjct: 19 RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAARE 78
Query: 345 GCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPL 404
G + I LL+AGA + G TPLHLAAR +IV +LL+ GA V+A+ + +TP
Sbjct: 79 GHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPF 138
Query: 405 HVA 407
+A
Sbjct: 139 DLA 141
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 86/155 (55%), Gaps = 8/155 (5%)
Query: 234 ASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKAD 293
A+ G + L+ AD NA+ +G+TPLH+A ++ H+ + + LL AD
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREG--------HLEIVEVLLKAGAD 60
Query: 294 PNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFL 353
NA+ +G+TPLH+A ++ ++VE+LLK GA + A + G TPLH+A+ G + I L
Sbjct: 61 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 120
Query: 354 LQAGAAPDTATVRGETPLHLAARANQTDIVRILLR 388
L+AGA + G+TP LA DI +L +
Sbjct: 121 LKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVLQK 155
Score = 99.4 bits (246), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 81/134 (60%)
Query: 135 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNG 194
A + G+ V +L++ GA++ AK +DG TPLH AAR GH ++++L++ GA + +K K+G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 195 LAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPN 254
PLH+A++ H VL+ GA V+ D T LH+A+ GH+ + + LL AD N
Sbjct: 69 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 128
Query: 255 ARALNGFTPLHIAC 268
A+ G TP +A
Sbjct: 129 AQDKFGKTPFDLAI 142
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 90/156 (57%), Gaps = 8/156 (5%)
Query: 201 ASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNG 260
A++ + R+L+ +GA V+ D T LH+A+ GH+ + + LL AD NA+ +G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 261 FTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELL 320
+TPLH+A ++ H+ + + LL AD NA+ +G+TPLH+A ++ ++VE+L
Sbjct: 69 YTPLHLAAREG--------HLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 120
Query: 321 LKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQA 356
LK GA + A + G TP +A G +IA L +A
Sbjct: 121 LKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVLQKA 156
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 85/148 (57%)
Query: 99 LYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKT 158
L AA+ D VR L++ G + + TPLH+A + G + +VE+L+ GA++ AK
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 159 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGA 218
+DG TPLH AAR GH ++++L++ GA + +K K+G PLH+A++ H VL+ GA
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 219 GVDEITVDYLTALHVASHCGHVRVAKTL 246
V+ T +A G+ +A+ L
Sbjct: 126 DVNAQDKFGKTPFDLAIDNGNEDIAEVL 153
Score = 96.7 bits (239), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 88/171 (51%), Gaps = 26/171 (15%)
Query: 308 ACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRG 367
A + + V +L+ GA + A + G TPLH+A+ G + I LL+AGA + G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 368 ETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGE 427
TPLHLAAR +IV +LL+ GA V+A+ ++ TP
Sbjct: 69 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTP------------------------ 104
Query: 428 TPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLL 478
LHLAAR +IV +LL+ GA V+A+ + +TP +A GN DIA +L
Sbjct: 105 --LHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVL 153
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 85/155 (54%), Gaps = 8/155 (5%)
Query: 168 AARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDY 227
AAR+G D+ + IL+ GA + +K K+G PLH+A++ H VL+ GA V+ D
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 228 LTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTL 287
T LH+A+ GH+ + + LL AD NA+ +G+TPLH+A ++ H+ + + L
Sbjct: 69 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAARE--------GHLEIVEVL 120
Query: 288 LDRKADPNARALNGFTPLHIACKKNRYKVVELLLK 322
L AD NA+ G TP +A + E+L K
Sbjct: 121 LKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVLQK 155
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 124 bits (310), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/124 (49%), Positives = 90/124 (72%)
Query: 433 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDG 492
AARA Q D VRIL+ NGA V+A+ ++ TPLH+A+R G+ +I +LL+ GA V+A KDG
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 80
Query: 493 YTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVD 552
YT LH++A+EG E+ +L ++GA + A K G+TPLHLAA+ G ++I ++LL+ A V+
Sbjct: 81 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 140
Query: 553 SQGK 556
+Q K
Sbjct: 141 AQDK 144
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 99/171 (57%), Gaps = 26/171 (15%)
Query: 374 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLA 433
AARA Q D VRIL+ NGA V+A+ ++ G TPLHLA
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKD--------------------------GYTPLHLA 54
Query: 434 ARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGY 493
AR +IV +LL+ GA V+A+ ++ TPLH+A+R G+ +I +LL+ GA V+A KDGY
Sbjct: 55 AREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGY 114
Query: 494 TALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
T LH++A+EG E+ +L ++GA + A K G T ++ G +A++L
Sbjct: 115 TPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 87/141 (61%)
Query: 553 SQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPL 612
Q IL +GA + A K G+TPLHLAA+ G ++I ++LL+ A V+++ K+G TPL
Sbjct: 25 GQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPL 84
Query: 613 HVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESK 672
H+A+ H + +LL GA +A K+GYTPLH+AA++ ++I LL+ A NA+ K
Sbjct: 85 HLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDK 144
Query: 673 AGFTPLHLSAQEGHTDMSSLL 693
G T +S G+ D++ +L
Sbjct: 145 FGKTAFDISIDNGNEDLAEIL 165
Score = 109 bits (273), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 92/162 (56%), Gaps = 17/162 (10%)
Query: 499 SAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVA 558
+A+ GQD+ IL +GA + A K G+TPLHLAA+ G ++I ++LL+
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK------------ 68
Query: 559 SILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHY 618
+GA + A K G+TPLHLAA+ G ++I ++LL+ A V+++ K+G TPLH+A+
Sbjct: 69 -----AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAARE 123
Query: 619 DHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTL 660
H + +LL GA +A K G T I+ D+A L
Sbjct: 124 GHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 107 bits (267), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 87/141 (61%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
GQ++ +IL+ NGA +N + +G+TPL++AA+E H +V LL G + + TPL
Sbjct: 25 GQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPL 84
Query: 133 HVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTK 192
H+A + G + +VE+L+ GA++ AK +DG TPLH AAR GH ++++L++ GA + ++ K
Sbjct: 85 HLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDK 144
Query: 193 NGLAPLHMASQGDHEAATRVL 213
G ++ +E +L
Sbjct: 145 FGKTAFDISIDNGNEDLAEIL 165
Score = 106 bits (265), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 87/145 (60%)
Query: 648 AAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNG 707
AA+ Q D L+ A NA+ K G+TPLHL+A+EGH ++ +L++ GA V+ + K+G
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 80
Query: 708 LTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVN 767
TPLHL A+E + + + + GA+++ K G+TPLH+A+ G L +V L++ GA+VN
Sbjct: 81 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 140
Query: 768 ATTNLGYTPLHQASQQGRVLIIDLL 792
A G T + G + ++L
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 86/139 (61%), Gaps = 1/139 (0%)
Query: 681 SAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAG 740
+A+ G D +L+ +GA V+ + K+G TPLHL A+E + + + + GA+++ K G
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 80
Query: 741 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 800
+TPLH+A+ G L +V L++ GA+VNA GYTPLH A+++G + I+++LL AGA N
Sbjct: 81 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 140
Query: 801 ATTNLFCCA-TILVKNGAE 818
A A I + NG E
Sbjct: 141 AQDKFGKTAFDISIDNGNE 159
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 89/144 (61%)
Query: 582 AAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNG 641
AA+ G+ ++L+ A V+++ K+G TPLH+A+ H + +LL GA +A K+G
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 80
Query: 642 YTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVS 701
YTPLH+AA++ ++I LL+ A NA+ K G+TPLHL+A+EGH ++ +L++ GA V+
Sbjct: 81 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 140
Query: 702 HQAKNGLTPLHLCAQEDKVNVATI 725
Q K G T + ++A I
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEI 164
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 84/134 (62%)
Query: 626 LLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEG 685
+L+ GA +A K+GYTPLH+AA++ ++I LL+ A NA+ K G+TPLHL+A+EG
Sbjct: 32 ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREG 91
Query: 686 HTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLH 745
H ++ +L++ GA V+ + K+G TPLHL A+E + + + + GA+++ K G T
Sbjct: 92 HLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFD 151
Query: 746 IASHFGQLNMVRYL 759
I+ G ++ L
Sbjct: 152 ISIDNGNEDLAEIL 165
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 77/123 (62%)
Query: 285 KTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFM 344
+ L+ AD NA+ +G+TPLH+A ++ ++VE+LLK GA + A + G TPLH+A+
Sbjct: 31 RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAARE 90
Query: 345 GCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPL 404
G + I LL+AGA + G TPLHLAAR +IV +LL+ GA V+A+ + +T
Sbjct: 91 GHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAF 150
Query: 405 HVA 407
++
Sbjct: 151 DIS 153
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 86/148 (58%)
Query: 99 LYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKT 158
L AA+ D VR L++ G + + TPLH+A + G + +VE+L+ GA++ AK
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 77
Query: 159 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGA 218
+DG TPLH AAR GH ++++L++ GA + +K K+G PLH+A++ H VL+ GA
Sbjct: 78 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 137
Query: 219 GVDEITVDYLTALHVASHCGHVRVAKTL 246
V+ TA ++ G+ +A+ L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 95.9 bits (237), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 80/134 (59%)
Query: 135 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNG 194
A + G+ V +L++ GA++ AK +DG TPLH AAR GH ++++L++ GA + +K K+G
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 80
Query: 195 LAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPN 254
PLH+A++ H VL+ GA V+ D T LH+A+ GH+ + + LL AD N
Sbjct: 81 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 140
Query: 255 ARALNGFTPLHIAC 268
A+ G T I+
Sbjct: 141 AQDKFGKTAFDISI 154
Score = 95.9 bits (237), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 8/153 (5%)
Query: 234 ASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKAD 293
A+ G + L+ AD NA+ +G+TPLH+A ++ H+ + + LL AD
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREG--------HLEIVEVLLKAGAD 72
Query: 294 PNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFL 353
NA+ +G+TPLH+A ++ ++VE+LLK GA + A + G TPLH+A+ G + I L
Sbjct: 73 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 132
Query: 354 LQAGAAPDTATVRGETPLHLAARANQTDIVRIL 386
L+AGA + G+T ++ D+ IL
Sbjct: 133 LKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 87/171 (50%), Gaps = 26/171 (15%)
Query: 308 ACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRG 367
A + + V +L+ GA + A + G TPLH+A+ G + I LL+AGA + G
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 80
Query: 368 ETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGE 427
TPLHLAAR +IV +LL+ GA V+A+ ++ TP
Sbjct: 81 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTP------------------------ 116
Query: 428 TPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLL 478
LHLAAR +IV +LL+ GA V+A+ + +T ++ GN D+A +L
Sbjct: 117 --LHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 89.7 bits (221), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 83/153 (54%), Gaps = 8/153 (5%)
Query: 168 AARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDY 227
AAR+G D+ + IL+ GA + +K K+G PLH+A++ H VL+ GA V+ D
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 80
Query: 228 LTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTL 287
T LH+A+ GH+ + + LL AD NA+ +G+TPLH+A ++ H+ + + L
Sbjct: 81 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAARE--------GHLEIVEVL 132
Query: 288 LDRKADPNARALNGFTPLHIACKKNRYKVVELL 320
L AD NA+ G T I+ + E+L
Sbjct: 133 LKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 116 bits (291), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 86/124 (69%)
Query: 426 GETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASV 485
G TPLHLAAR ++V++LL GA V+A+ + +TPLH+A+R G+ ++ LLL+ GA V
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 486 DAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLL 545
+A K+G T LH++A+ G EV +L E+GA + A K G TPLHLAA+ G +++ ++LL
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Query: 546 QKDA 549
+ A
Sbjct: 122 EAGA 125
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 84/124 (67%)
Query: 575 GFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASP 634
G TPLHLAA+ G +++ ++LL+ A V+++ KNG TPLH+A+ H V LLL+ GA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 635 HAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLI 694
+A KNG TPLH+AA+ +++ LLE A NA+ K G TPLHL+A+ GH ++ LL+
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Query: 695 EHGA 698
E GA
Sbjct: 122 EAGA 125
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 81/125 (64%)
Query: 640 NGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGAT 699
NG TPLH+AA+ +++ LLE A NA+ K G TPLHL+A+ GH ++ LL+E GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 700 VSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYL 759
V+ + KNG TPLHL A+ + V + + GA+++ K G TPLH+A+ G L +V+ L
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 760 VENGA 764
+E GA
Sbjct: 121 LEAGA 125
Score = 109 bits (273), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 82/124 (66%)
Query: 674 GFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEI 733
G TPLHL+A+ GH ++ LL+E GA V+ + KNG TPLHL A+ + V + + GA++
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 734 DPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLL 793
+ K G TPLH+A+ G L +V+ L+E GA+VNA G TPLH A++ G + ++ LLL
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Query: 794 GAGA 797
AGA
Sbjct: 122 EAGA 125
Score = 109 bits (272), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 87/140 (62%), Gaps = 17/140 (12%)
Query: 460 QTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASIT 519
+TPLH+A+R G+ ++ LLL+ GA V+A K+G T LH++A+ G EV +L E+GA +
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 520 ATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPL 579
A K G TPLHLAA+ G +++ ++LL E+GA + A K G TPL
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLL-----------------EAGADVNAKDKNGRTPL 105
Query: 580 HLAAKYGRMKIAQMLLQKDA 599
HLAA+ G +++ ++LL+ A
Sbjct: 106 HLAARNGHLEVVKLLLEAGA 125
Score = 108 bits (271), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 86/142 (60%), Gaps = 17/142 (11%)
Query: 491 DGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAP 550
+G T LH++A+ G EV +L E+GA + A K G TPLHLAA+ G +++ ++LL
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL----- 55
Query: 551 VDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVT 610
E+GA + A K G TPLHLAA+ G +++ ++LL+ A V+++ KNG T
Sbjct: 56 ------------EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT 103
Query: 611 PLHVASHYDHQNVALLLLDRGA 632
PLH+A+ H V LLL+ GA
Sbjct: 104 PLHLAARNGHLEVVKLLLEAGA 125
Score = 107 bits (267), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 79/125 (63%)
Query: 607 NGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAK 666
NG TPLH+A+ H V LLL+ GA +A KNG TPLH+AA+ +++ LLE A
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 667 PNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATIT 726
NA+ K G TPLHL+A+ GH ++ LL+E GA V+ + KNG TPLHL A+ + V +
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 727 MFNGA 731
+ GA
Sbjct: 121 LEAGA 125
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 85/141 (60%), Gaps = 17/141 (12%)
Query: 525 GFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAK 584
G TPLHLAA+ G +++ ++LL E+GA + A K G TPLHLAA+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLL-----------------EAGADVNAKDKNGRTPLHLAAR 44
Query: 585 YGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTP 644
G +++ ++LL+ A V+++ KNG TPLH+A+ H V LLL+ GA +A KNG TP
Sbjct: 45 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP 104
Query: 645 LHIAAKKNQMDIATTLLEYNA 665
LH+AA+ +++ LLE A
Sbjct: 105 LHLAARNGHLEVVKLLLEAGA 125
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 82/125 (65%)
Query: 94 NGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGAN 153
NG TPL++AA+ H VV+ LL G + ++ TPLH+A + G + +V+LL+ GA+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 154 IEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVL 213
+ AK ++G TPLH AAR+GH V+ +L+E GA + +K KNG PLH+A++ H ++L
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 214 IYHGA 218
+ GA
Sbjct: 121 LEAGA 125
Score = 102 bits (255), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 80/133 (60%), Gaps = 8/133 (6%)
Query: 259 NGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVE 318
NG TPLH+A + H+ V K LL+ AD NA+ NG TPLH+A + +VV+
Sbjct: 1 NGRTPLHLAARNG--------HLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK 52
Query: 319 LLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARAN 378
LLL+ GA + A ++G TPLH+A+ G + + LL+AGA + G TPLHLAAR
Sbjct: 53 LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 112
Query: 379 QTDIVRILLRNGA 391
++V++LL GA
Sbjct: 113 HLEVVKLLLEAGA 125
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 79/119 (66%)
Query: 130 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 189
TPLH+A + G + +V+LL+ GA++ AK ++G TPLH AAR+GH V+ +L+E GA + +
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 190 KTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLD 248
K KNG PLH+A++ H ++L+ GA V+ + T LH+A+ GH+ V K LL+
Sbjct: 64 KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 122
Score = 99.4 bits (246), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 73/110 (66%)
Query: 300 NGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAA 359
NG TPLH+A + +VV+LLL+ GA + A ++G TPLH+A+ G + + LL+AGA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 360 PDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASR 409
+ G TPLHLAAR ++V++LL GA V+A+ + +TPLH+A+R
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR 110
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 75/114 (65%)
Query: 72 TGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITP 131
G EV K+L++ GA +N + NG TPL++AA+ H VV+ LL G + ++ TP
Sbjct: 12 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP 71
Query: 132 LHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGA 185
LH+A + G + +V+LL+ GA++ AK ++G TPLH AAR+GH V+ +L+E GA
Sbjct: 72 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 78/130 (60%), Gaps = 8/130 (6%)
Query: 160 DGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAG 219
+G TPLH AAR+GH V+ +L+E GA + +K KNG PLH+A++ H ++L+ GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 220 VDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCN 279
V+ + T LH+A+ GH+ V K LL+ AD NA+ NG TPLH+A +
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN--------G 112
Query: 280 HVWVAKTLLD 289
H+ V K LL+
Sbjct: 113 HLEVVKLLLE 122
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 61/96 (63%)
Query: 706 NGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGAN 765
NG TPLHL A+ + V + + GA+++ K G TPLH+A+ G L +V+ L+E GA+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 766 VNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNA 801
VNA G TPLH A++ G + ++ LLL AGA NA
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 96
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 115 bits (288), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 59/147 (40%), Positives = 87/147 (59%)
Query: 72 TGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITP 131
G ++ K L++NGA +N +G TPL+ AA+E H +V+ L+SKG + TP
Sbjct: 14 NGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTP 73
Query: 132 LHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKT 191
LH A K G +V+LLISKGA++ AK DG TPLH AA+ GH ++ +LI KGA + +
Sbjct: 74 LHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSD 133
Query: 192 KNGLAPLHMASQGDHEAATRVLIYHGA 218
+G PL +A + +E ++L G
Sbjct: 134 SDGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 105 bits (263), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 86/162 (53%), Gaps = 17/162 (10%)
Query: 433 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDG 492
AA D V+ L+ NGA V+A + +TPLH A++ G+ +I LL+ GA V+A DG
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Query: 493 YTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVD 552
T LH +AKEG E+ +L GA + A G TPLH AAK G +I ++L+ K
Sbjct: 71 RTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISK----- 125
Query: 553 SQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 594
GA + + G TPL LA ++G +I ++L
Sbjct: 126 ------------GADVNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 103 bits (257), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 87/167 (52%), Gaps = 17/167 (10%)
Query: 466 ASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKG 525
A+ GN D L+++GA V+A DG T LH +AKEG E+ +L GA + A G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Query: 526 FTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKY 585
TPLH AAK G +I ++L+ K GA + A G TPLH AAK
Sbjct: 71 RTPLHYAAKEGHKEIVKLLISK-----------------GADVNAKDSDGRTPLHYAAKE 113
Query: 586 GRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGA 632
G +I ++L+ K A V++ +G TPL +A + ++ + LL +G
Sbjct: 114 GHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 88/171 (51%), Gaps = 26/171 (15%)
Query: 374 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLA 433
AA D V+ L+ NGA V+A + G TPLH A
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSD--------------------------GRTPLHYA 44
Query: 434 ARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGY 493
A+ +IV++L+ GA V+A+ + +TPLH A++ G+ +I LL+ GA V+A DG
Sbjct: 45 AKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGR 104
Query: 494 TALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
T LH +AKEG E+ +L GA + + G TPL LA ++G +I ++L
Sbjct: 105 TPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 80/150 (53%)
Query: 648 AAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNG 707
AA+ D L+E A NA G TPLH +A+EGH ++ LLI GA V+ + +G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Query: 708 LTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVN 767
TPLH A+E + + + GA+++ G TPLH A+ G +V+ L+ GA+VN
Sbjct: 71 RTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVN 130
Query: 768 ATTNLGYTPLHQASQQGRVLIIDLLLGAGA 797
+ + G TPL A + G I+ LL G
Sbjct: 131 TSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 83/148 (56%)
Query: 99 LYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKT 158
L AA+ + V+ L+ G + + TPLH A K G +V+LLISKGA++ AK
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 67
Query: 159 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGA 218
DG TPLH AA+ GH ++ +LI KGA + +K +G PLH A++ H+ ++LI GA
Sbjct: 68 SDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGA 127
Query: 219 GVDEITVDYLTALHVASHCGHVRVAKTL 246
V+ D T L +A G+ + K L
Sbjct: 128 DVNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 80/141 (56%)
Query: 561 LTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDH 620
L E+GA + A+ G TPLH AAK G +I ++L+ K A V+++ +G TPLH A+ H
Sbjct: 23 LIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGH 82
Query: 621 QNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHL 680
+ + LL+ +GA +A +G TPLH AAK+ +I L+ A N G TPL L
Sbjct: 83 KEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDL 142
Query: 681 SAQEGHTDMSSLLIEHGATVS 701
+ + G+ ++ LL + G +
Sbjct: 143 AREHGNEEIVKLLEKQGGWLE 163
Score = 95.9 bits (237), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 84/161 (52%), Gaps = 8/161 (4%)
Query: 234 ASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKAD 293
A+ G+ K L++ AD NA +G TPLH A K+ H + K L+ + AD
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEG--------HKEIVKLLISKGAD 62
Query: 294 PNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFL 353
NA+ +G TPLH A K+ ++V+LL+ GA + A G TPLH A+ G I L
Sbjct: 63 VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLL 122
Query: 354 LQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVD 394
+ GA +T+ G TPL LA +IV++L + G ++
Sbjct: 123 ISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGWLE 163
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 76/138 (55%)
Query: 627 LLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGH 686
L++ GA +A +G TPLH AAK+ +I L+ A NA+ G TPLH +A+EGH
Sbjct: 23 LIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGH 82
Query: 687 TDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHI 746
++ LLI GA V+ + +G TPLH A+E + + + GA+++ G TPL +
Sbjct: 83 KEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDL 142
Query: 747 ASHFGQLNMVRYLVENGA 764
A G +V+ L + G
Sbjct: 143 AREHGNEEIVKLLEKQGG 160
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 75/133 (56%)
Query: 135 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNG 194
A + G V+ LI GA++ A DG TPLH AA+ GH ++ +LI KGA + +K +G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Query: 195 LAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPN 254
PLH A++ H+ ++LI GA V+ D T LH A+ GH + K L+ + AD N
Sbjct: 71 RTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVN 130
Query: 255 ARALNGFTPLHIA 267
+G TPL +A
Sbjct: 131 TSDSDGRTPLDLA 143
Score = 93.2 bits (230), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 76/135 (56%)
Query: 582 AAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNG 641
AA+ G + L++ A V++ +G TPLH A+ H+ + LL+ +GA +A +G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Query: 642 YTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVS 701
TPLH AAK+ +I L+ A NA+ G TPLH +A+EGH ++ LLI GA V+
Sbjct: 71 RTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVN 130
Query: 702 HQAKNGLTPLHLCAQ 716
+G TPL L +
Sbjct: 131 TSDSDGRTPLDLARE 145
Score = 92.8 bits (229), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 83/162 (51%), Gaps = 17/162 (10%)
Query: 499 SAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVA 558
+A+ G + L E+GA + A+ G TPLH AAK G +I ++L+ K
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISK----------- 59
Query: 559 SILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHY 618
GA + A G TPLH AAK G +I ++L+ K A V+++ +G TPLH A+
Sbjct: 60 ------GADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKE 113
Query: 619 DHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTL 660
H+ + LL+ +GA + +G TPL +A + +I L
Sbjct: 114 GHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 353 LLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRR 412
L++ GA + + G TPLH AA+ +IV++L+ GA V+A+ +
Sbjct: 23 LIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSD------------- 69
Query: 413 FSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNG 472
G TPLH AA+ +IV++L+ GA V+A+ + +TPLH A++ G+
Sbjct: 70 -------------GRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHK 116
Query: 473 DIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASI 518
+I LL+ GA V+ DG T L ++ + G +E+ +L + G +
Sbjct: 117 EIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGWL 162
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 85/160 (53%), Gaps = 8/160 (5%)
Query: 168 AARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDY 227
AA +G+ + + LIE GA + + +G PLH A++ H+ ++LI GA V+ D
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Query: 228 LTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTL 287
T LH A+ GH + K L+ + AD NA+ +G TPLH A K+ H + K L
Sbjct: 71 RTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKE--------GHKEIVKLL 122
Query: 288 LDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASI 327
+ + AD N +G TPL +A + ++V+LL K G +
Sbjct: 123 ISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGWL 162
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 68/123 (55%)
Query: 285 KTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFM 344
K L++ AD NA +G TPLH A K+ ++V+LL+ GA + A G TPLH A+
Sbjct: 21 KDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKE 80
Query: 345 GCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPL 404
G I L+ GA + G TPLH AA+ +IV++L+ GA V+ + +TPL
Sbjct: 81 GHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPL 140
Query: 405 HVA 407
+A
Sbjct: 141 DLA 143
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 70/122 (57%)
Query: 681 SAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAG 740
+A+ G+ D LIE+GA V+ +G TPLH A+E + + + GA+++ G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Query: 741 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 800
TPLH A+ G +V+ L+ GA+VNA + G TPLH A+++G I+ LL+ GA N
Sbjct: 71 RTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVN 130
Query: 801 AT 802
+
Sbjct: 131 TS 132
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 82/170 (48%), Gaps = 26/170 (15%)
Query: 317 VELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAAR 376
V+ L++ GA + A+ G TPLH A+ G I L+ GA + G TPLH AA+
Sbjct: 20 VKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAK 79
Query: 377 ANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARA 436
+IV++L+ GA V+A+ + +T PLH AA+
Sbjct: 80 EGHKEIVKLLISKGADVNAKDSDGRT--------------------------PLHYAAKE 113
Query: 437 NQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVD 486
+IV++L+ GA V+ + +TPL +A GN +I LL + G ++
Sbjct: 114 GHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGWLE 163
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/273 (31%), Positives = 138/273 (50%), Gaps = 26/273 (9%)
Query: 553 SQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPL 612
++ K+ ++LT + A+ + TPLHLAA Y R++I Q+LLQ A V ++ K G+ PL
Sbjct: 36 NEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPL 95
Query: 613 HVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESK 672
H A Y H V LLL GA +A+ +TPLH AA KN++++ + LL + A P +
Sbjct: 96 HNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNC 155
Query: 673 AGFTPLHLSAQ-----------EGHTDMSSLLIEHGATVS----------HQAKNGLTPL 711
G + + ++ +GH+ + + A V Q ++ T L
Sbjct: 156 HGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETAL 215
Query: 712 HLCA----QEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVN 767
H CA + VA + + GA ++ K TPLH+A+ +++ L ++GA +N
Sbjct: 216 H-CAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMN 274
Query: 768 ATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 800
A +LG T LH+A+ G + LLL G+ P+
Sbjct: 275 ALDSLGQTALHRAALAGHLQTCRLLLSYGSDPS 307
Score = 113 bits (282), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 83/273 (30%), Positives = 135/273 (49%), Gaps = 35/273 (12%)
Query: 303 TPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDT 362
TPLH+A NR ++V+LLL++GA + A + GL PLH A G + LL+ GA +
Sbjct: 60 TPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNA 119
Query: 363 ATVRGETPLHLAARANQTDIVRILLRNGA-----SVDARAREDQTPL-HVASRLRR---- 412
+ TPLH AA N+ ++ +LL +GA + ++ D P + RL
Sbjct: 120 MDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKG 179
Query: 413 ---FSSASQSALTRVRG---------------ETPLHLAARA---NQTDIVRILLRNGAS 451
+A ++ L +V+ ET LH A + + + +LLR GA+
Sbjct: 180 HSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGAN 239
Query: 452 VDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASIL 511
V+ + ++ TPLHVA+ + D+ +L +HGA ++A G TALH +A G + +L
Sbjct: 240 VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLL 299
Query: 512 TESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
G+ + + +GFT AA+ G + Q+L
Sbjct: 300 LSYGSDPSIISLQGFT----AAQMGNEAVQQIL 328
Score = 109 bits (272), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 93/288 (32%), Positives = 141/288 (48%), Gaps = 31/288 (10%)
Query: 425 RGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGAS 484
R TPLHLAA N+ IV++LL++GA V A+ + PLH A G+ ++ LLL+HGA
Sbjct: 57 RKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGAC 116
Query: 485 VDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
V+A +T LH +A + + EV S+L GA T G + + +A
Sbjct: 117 VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPE-------- 168
Query: 545 LQKDAPVDSQGKVASILTESGASITATTKKGF--------------TPLHLAAKY---GR 587
L++ + +G S+L + + A KK T LH A R
Sbjct: 169 LRERLTYEFKGH--SLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKR 226
Query: 588 MKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHI 647
++A++LL+K A V+ + K+ +TPLHVA+ H +V +L GA +A+ G T LH
Sbjct: 227 KQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHR 286
Query: 648 AAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIE 695
AA + LL Y + P+ S GFT +AQ G+ + +L E
Sbjct: 287 AALAGHLQTCRLLLSYGSDPSIISLQGFT----AAQMGNEAVQQILSE 330
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 132/310 (42%), Gaps = 62/310 (20%)
Query: 229 TALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLL 288
T LH+A+ VR+ + LL AD +A+ G PLH AC Y+ V + LL
Sbjct: 60 TPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYE--------VTELLL 111
Query: 289 DRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMN 348
A NA L FTPLH A KNR +V LLL +GA G + + +A
Sbjct: 112 KHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRE 171
Query: 349 IAIF------LLQAGAAPDTATVRG---------------ETPLHLAARA---NQTDIVR 384
+ LLQA D A V+ ET LH A + + +
Sbjct: 172 RLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAE 231
Query: 385 ILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVRI 444
+LLR GA+V+ + ++ TPLHV AA D++ +
Sbjct: 232 LLLRKGANVNEKNKDFMTPLHV--------------------------AAERAHNDVMEV 265
Query: 445 LLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQ 504
L ++GA ++A QT LH A+ G+ LLL +G+ + G+TA A+ G
Sbjct: 266 LHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTA----AQMGN 321
Query: 505 DEVASILTES 514
+ V IL+ES
Sbjct: 322 EAVQQILSES 331
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 85/295 (28%), Positives = 132/295 (44%), Gaps = 34/295 (11%)
Query: 130 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 189
TPLH+A + +V +V+LL+ GA++ AK + GL PLH A GH V ++L++ GA + +
Sbjct: 60 TPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNA 119
Query: 190 KTKNGLAPLHMASQGDHEAATRVLIYHGA-----------GVD---------EITVDYL- 228
PLH A+ + +L+ HGA VD +T ++
Sbjct: 120 MDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKG 179
Query: 229 -TALHVASHCGHVRVAKTL---LDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVA 284
+ L A +V KTL + P + T LH A S H VA
Sbjct: 180 HSLLQAAREADLAKVKKTLALEIINFKQPQSHE----TALHCA-----VASLHPKRKQVA 230
Query: 285 KTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFM 344
+ LL + A+ N + + TPLH+A ++ V+E+L K+GA + A G T LH A+
Sbjct: 231 ELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALA 290
Query: 345 GCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARARE 399
G + LL G+ P +++G T + A Q + + VD R E
Sbjct: 291 GHLQTCRLLLSYGSDPSIISLQGFTAAQMGNEAVQQILSESTPMRTSDVDYRLLE 345
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 85/287 (29%), Positives = 131/287 (45%), Gaps = 45/287 (15%)
Query: 499 SAKEGQDE-VASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGK- 556
+A+ G +E + ++LT + A+ + TPLHLAA Y R++I Q+LLQ A V ++ K
Sbjct: 31 AARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKG 90
Query: 557 ---------------VASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAP- 600
V +L + GA + A FTPLH AA R+++ +LL A
Sbjct: 91 GLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADP 150
Query: 601 --VDSQGKNGV----TP-LHVASHYDHQNVALLLLDRGASPHAVAK-------------N 640
V+ GK+ V TP L Y+ + +LL R A V K +
Sbjct: 151 TLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQS 210
Query: 641 GYTPLHIAA-----KKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIE 695
T LH A K+ Q +A LL A N ++K TPLH++A+ H D+ +L +
Sbjct: 211 HETALHCAVASLHPKRKQ--VAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHK 268
Query: 696 HGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFT 742
HGA ++ G T LH A + + + G++ ++ GFT
Sbjct: 269 HGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFT 315
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 79/259 (30%), Positives = 118/259 (45%), Gaps = 22/259 (8%)
Query: 153 NIEAKTRDGL--TPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAAT 210
N+ DG TPLH AA ++ +L++ GA +++K K GL PLH A H T
Sbjct: 48 NVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVT 107
Query: 211 RVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKK 270
+L+ HGA V+ + + T LH A+ V V LL ADP +G + + +A
Sbjct: 108 ELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTP 167
Query: 271 NRYKSSHCNHVWVAKTLLD--RKADPN------ARALNGF-------TPLHIACKK---N 312
+ + + +LL R+AD A + F T LH A
Sbjct: 168 ELRER--LTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPK 225
Query: 313 RYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLH 372
R +V ELLL+ GA++ + +TPLHVA+ ++ L + GA + G+T LH
Sbjct: 226 RKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALH 285
Query: 373 LAARANQTDIVRILLRNGA 391
AA A R+LL G+
Sbjct: 286 RAALAGHLQTCRLLLSYGS 304
Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 103/214 (48%), Gaps = 24/214 (11%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEH----- 127
G EV ++L+ +GA +N L FTPL+ AA +N V LLS G + TL H
Sbjct: 102 GHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAV 161
Query: 128 NITP----------------LHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARS 171
++ P L A + +A V+ ++ + + T LHCA S
Sbjct: 162 DMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVAS 221
Query: 172 GH---DNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYL 228
H V ++L+ KGA + K K+ + PLH+A++ H VL HGA ++ +
Sbjct: 222 LHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQ 281
Query: 229 TALHVASHCGHVRVAKTLLDRKADPNARALNGFT 262
TALH A+ GH++ + LL +DP+ +L GFT
Sbjct: 282 TALHRAALAGHLQTCRLLLSYGSDPSIISLQGFT 315
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 100/221 (45%), Gaps = 26/221 (11%)
Query: 610 TPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNA 669
TPLH+A+ Y+ + LLL GA HA K G PLH A ++ LL++ A NA
Sbjct: 60 TPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNA 119
Query: 670 ESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFN 729
FTPLH +A + ++ SLL+ HGA + +G + + + A ++ F
Sbjct: 120 MDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDM-APTPELRERLTYEFK 178
Query: 730 G---------AEIDPVTKA------GF-------TPLHIAS---HFGQLNMVRYLVENGA 764
G A++ V K F T LH A H + + L+ GA
Sbjct: 179 GHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGA 238
Query: 765 NVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNL 805
NVN TPLH A+++ ++++L GA+ NA +L
Sbjct: 239 NVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSL 279
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 66/121 (54%)
Query: 612 LHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAES 671
L A + + + LL + HA TPLH+AA N++ I LL++ A +A+
Sbjct: 29 LEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKD 88
Query: 672 KAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGA 731
K G PLH + GH +++ LL++HGA V+ TPLH A +++V V ++ + +GA
Sbjct: 89 KGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGA 148
Query: 732 E 732
+
Sbjct: 149 D 149
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 57/121 (47%)
Query: 645 LHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQA 704
L A N+ + L N +A TPLHL+A + LL++HGA V +
Sbjct: 29 LEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKD 88
Query: 705 KNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGA 764
K GL PLH V + + +GA ++ + FTPLH A+ ++ + L+ +GA
Sbjct: 89 KGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGA 148
Query: 765 N 765
+
Sbjct: 149 D 149
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 114 bits (284), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 105/194 (54%), Gaps = 3/194 (1%)
Query: 569 TATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLL 628
T T + T LH A G +I + LLQ PV+ + G +PLH+A+ + LL
Sbjct: 35 TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL 94
Query: 629 DRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTD 688
+GA +AV +NG TPLH AA KN+ +IA LLE A P+A+ T +H +A +G+
Sbjct: 95 GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLK 154
Query: 689 MSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIAS 748
M +L+ + A+ + Q G TPLHL E++V A + + GA I K TPL +A
Sbjct: 155 MIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK 214
Query: 749 HFGQLNMV-RYLVE 761
G L ++ + +VE
Sbjct: 215 --GGLGLILKRMVE 226
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 98/195 (50%), Gaps = 17/195 (8%)
Query: 519 TATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTP 578
T T + T LH A G +I + LLQ PV+ + G++P
Sbjct: 35 TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA-----------------GWSP 77
Query: 579 LHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVA 638
LH+AA GR +I + LL K A V++ +NG TPLH A+ + +A++LL+ GA+P A
Sbjct: 78 LHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 137
Query: 639 KNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGA 698
T +H AA K + + LL Y A N + G TPLHL+ E + + LL+ GA
Sbjct: 138 HYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGA 197
Query: 699 TVSHQAKNGLTPLHL 713
++ + K TPL +
Sbjct: 198 SIYIENKEEKTPLQV 212
Score = 100 bits (248), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 93/192 (48%), Gaps = 17/192 (8%)
Query: 457 REDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGA 516
++ +T LH A G+ +I LLQ G V+ G++ LHI+A G+DE+ L GA
Sbjct: 39 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGA 98
Query: 517 SITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGF 576
+ A + G TPLH AA R +IA MLL E GA+ A
Sbjct: 99 QVNAVNQNGCTPLHYAASKNRHEIAVMLL-----------------EGGANPDAKDHYEA 141
Query: 577 TPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHA 636
T +H AA G +K+ +LL A + Q G TPLH+A + A LL+ +GAS +
Sbjct: 142 TAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYI 201
Query: 637 VAKNGYTPLHIA 648
K TPL +A
Sbjct: 202 ENKEEKTPLQVA 213
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 95/203 (46%), Gaps = 26/203 (12%)
Query: 330 TTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRN 389
T + T LH A G I FLLQ G + G +PLH+AA A + +IV+ LL
Sbjct: 37 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGK 96
Query: 390 GASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNG 449
GA V+A G TPLH AA N+ +I +LL G
Sbjct: 97 GAQVNA--------------------------VNQNGCTPLHYAASKNRHEIAVMLLEGG 130
Query: 450 ASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVAS 509
A+ DA+ + T +H A+ GN + +LL + AS + +G T LH++ E + E A
Sbjct: 131 ANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAK 190
Query: 510 ILTESGASITATTKKGFTPLHLA 532
+L GASI K+ TPL +A
Sbjct: 191 LLVSQGASIYIENKEEKTPLQVA 213
Score = 89.4 bits (220), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 98/193 (50%), Gaps = 13/193 (6%)
Query: 120 NQTLAT---EHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNV 176
+++LAT + + T LH AC G +VE L+ G + K G +PLH AA +G D +
Sbjct: 30 DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEI 89
Query: 177 IDILIEKGAALYSKTKNGLAPLHMA-SQGDHEAATRVLIYHGAGVDEITVDYLTALHVAS 235
+ L+ KGA + + +NG PLH A S+ HE A +L+ GA D TA+H A+
Sbjct: 90 VKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAV-MLLEGGANPDAKDHYEATAMHRAA 148
Query: 236 HCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPN 295
G++++ LL KA N + G TPLH+AC + R + AK L+ + A
Sbjct: 149 AKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEE--------AKLLVSQGASIY 200
Query: 296 ARALNGFTPLHIA 308
TPL +A
Sbjct: 201 IENKEEKTPLQVA 213
Score = 89.4 bits (220), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 98/225 (43%), Gaps = 39/225 (17%)
Query: 242 VAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNG 301
+A L + D ++R T LH AC H + + LL N + G
Sbjct: 28 LADKSLATRTDQDSR-----TALHWACS--------AGHTEIVEFLLQLGVPVNDKDDAG 74
Query: 302 FTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPD 361
++PLHIA R ++V+ LL GA + A ++G TPLH A+ IA+ LL+ GA PD
Sbjct: 75 WSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 134
Query: 362 TATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSAL 421
T +H AA ++ ILL AS + + E TPLH+A R A
Sbjct: 135 AKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEA----- 189
Query: 422 TRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVA 466
++L+ GAS+ +E++TPL VA
Sbjct: 190 ---------------------KLLVSQGASIYIENKEEKTPLQVA 213
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 103/216 (47%), Gaps = 47/216 (21%)
Query: 369 TPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGET 428
T LH A A T+IV LL+ G V+ + +D G +
Sbjct: 43 TALHWACSAGHTEIVEFLLQLGVPVNDK--DDA------------------------GWS 76
Query: 429 PLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAP 488
PLH+AA A + +IV+ LL GA V+A + TPLH A+ +IA +LL+ GA+ DA
Sbjct: 77 PLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA- 135
Query: 489 TKDGY--TALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQ 546
KD Y TA+H +A +G ++ IL AS +G TPLHLA R++ A++L+
Sbjct: 136 -KDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVS 194
Query: 547 KDAPVDSQGKVASILTESGASITATTKKGFTPLHLA 582
+ GASI K+ TPL +A
Sbjct: 195 Q-----------------GASIYIENKEEKTPLQVA 213
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 78/159 (49%)
Query: 639 KNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGA 698
++ T LH A +I LL+ N + AG++PLH++A G ++ L+ GA
Sbjct: 39 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGA 98
Query: 699 TVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRY 758
V+ +NG TPLH A +++ +A + + GA D T +H A+ G L M+
Sbjct: 99 QVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHI 158
Query: 759 LVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGA 797
L+ A+ N G TPLH A + RV LL+ GA
Sbjct: 159 LLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGA 197
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 86/180 (47%), Gaps = 1/180 (0%)
Query: 610 TPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNA 669
T LH A H + LL G + G++PLHIAA + +I LL A+ NA
Sbjct: 43 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 102
Query: 670 ESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFN 729
++ G TPLH +A + +++ +L+E GA + T +H A + + + I ++
Sbjct: 103 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYY 162
Query: 730 GAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLII 789
A + G TPLH+A ++ + LV GA++ TPL Q ++ G LI+
Sbjct: 163 KASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPL-QVAKGGLGLIL 221
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 80/164 (48%)
Query: 71 ATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNIT 130
+ G E+ + L+ G +N + G++PL++AA D +V+ LL KG ++ T
Sbjct: 50 SAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCT 109
Query: 131 PLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSK 190
PLH A + + +L+ GAN +AK T +H AA G+ +I IL+ A+ +
Sbjct: 110 PLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQ 169
Query: 191 TKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVA 234
G PLH+A + ++L+ GA + + T L VA
Sbjct: 170 DTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 213
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 67/134 (50%)
Query: 71 ATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNIT 130
+ G++E+ K L+ GA +N + NG TPL+ AA +N + LL G N + T
Sbjct: 83 SAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEAT 142
Query: 131 PLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSK 190
+H A G + M+ +L+ A+ + +G TPLH A +L+ +GA++Y +
Sbjct: 143 AMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIE 202
Query: 191 TKNGLAPLHMASQG 204
K PL +A G
Sbjct: 203 NKEEKTPLQVAKGG 216
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 67/125 (53%)
Query: 676 TPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDP 735
T LH + GHT++ L++ G V+ + G +PLH+ A + + + GA+++
Sbjct: 43 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 102
Query: 736 VTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGA 795
V + G TPLH A+ + + L+E GAN +A + T +H+A+ +G + +I +LL
Sbjct: 103 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYY 162
Query: 796 GAQPN 800
A N
Sbjct: 163 KASTN 167
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 48/93 (51%)
Query: 709 TPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNA 768
T LH + + G ++ AG++PLHIA+ G+ +V+ L+ GA VNA
Sbjct: 43 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 102
Query: 769 TTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNA 801
G TPLH A+ + R I +LL GA P+A
Sbjct: 103 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA 135
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 36/66 (54%)
Query: 742 TPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNA 801
T LH A G +V +L++ G VN + G++PLH A+ GR I+ LLG GAQ NA
Sbjct: 43 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 102
Query: 802 TTNLFC 807
C
Sbjct: 103 VNQNGC 108
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 114 bits (284), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 105/194 (54%), Gaps = 3/194 (1%)
Query: 569 TATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLL 628
T T + T LH A G +I + LLQ PV+ + G +PLH+A+ + LL
Sbjct: 34 TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL 93
Query: 629 DRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTD 688
+GA +AV +NG TPLH AA KN+ +IA LLE A P+A+ T +H +A +G+
Sbjct: 94 GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLK 153
Query: 689 MSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIAS 748
M +L+ + A+ + Q G TPLHL E++V A + + GA I K TPL +A
Sbjct: 154 MIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK 213
Query: 749 HFGQLNMV-RYLVE 761
G L ++ + +VE
Sbjct: 214 --GGLGLILKRMVE 225
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 98/195 (50%), Gaps = 17/195 (8%)
Query: 519 TATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTP 578
T T + T LH A G +I + LLQ PV+ + G++P
Sbjct: 34 TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA-----------------GWSP 76
Query: 579 LHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVA 638
LH+AA GR +I + LL K A V++ +NG TPLH A+ + +A++LL+ GA+P A
Sbjct: 77 LHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 136
Query: 639 KNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGA 698
T +H AA K + + LL Y A N + G TPLHL+ E + + LL+ GA
Sbjct: 137 HYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGA 196
Query: 699 TVSHQAKNGLTPLHL 713
++ + K TPL +
Sbjct: 197 SIYIENKEEKTPLQV 211
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 93/192 (48%), Gaps = 17/192 (8%)
Query: 457 REDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGA 516
++ +T LH A G+ +I LLQ G V+ G++ LHI+A G+DE+ L GA
Sbjct: 38 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGA 97
Query: 517 SITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGF 576
+ A + G TPLH AA R +IA MLL E GA+ A
Sbjct: 98 QVNAVNQNGCTPLHYAASKNRHEIAVMLL-----------------EGGANPDAKDHYEA 140
Query: 577 TPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHA 636
T +H AA G +K+ +LL A + Q G TPLH+A + A LL+ +GAS +
Sbjct: 141 TAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYI 200
Query: 637 VAKNGYTPLHIA 648
K TPL +A
Sbjct: 201 ENKEEKTPLQVA 212
Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 95/203 (46%), Gaps = 26/203 (12%)
Query: 330 TTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRN 389
T + T LH A G I FLLQ G + G +PLH+AA A + +IV+ LL
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGK 95
Query: 390 GASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNG 449
GA V+A G TPLH AA N+ +I +LL G
Sbjct: 96 GAQVNA--------------------------VNQNGCTPLHYAASKNRHEIAVMLLEGG 129
Query: 450 ASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVAS 509
A+ DA+ + T +H A+ GN + +LL + AS + +G T LH++ E + E A
Sbjct: 130 ANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAK 189
Query: 510 ILTESGASITATTKKGFTPLHLA 532
+L GASI K+ TPL +A
Sbjct: 190 LLVSQGASIYIENKEEKTPLQVA 212
Score = 89.7 bits (221), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 98/193 (50%), Gaps = 13/193 (6%)
Query: 120 NQTLAT---EHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNV 176
+++LAT + + T LH AC G +VE L+ G + K G +PLH AA +G D +
Sbjct: 29 DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEI 88
Query: 177 IDILIEKGAALYSKTKNGLAPLHMA-SQGDHEAATRVLIYHGAGVDEITVDYLTALHVAS 235
+ L+ KGA + + +NG PLH A S+ HE A +L+ GA D TA+H A+
Sbjct: 89 VKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAV-MLLEGGANPDAKDHYEATAMHRAA 147
Query: 236 HCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPN 295
G++++ LL KA N + G TPLH+AC + R + AK L+ + A
Sbjct: 148 AKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEE--------AKLLVSQGASIY 199
Query: 296 ARALNGFTPLHIA 308
TPL +A
Sbjct: 200 IENKEEKTPLQVA 212
Score = 89.4 bits (220), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 98/225 (43%), Gaps = 39/225 (17%)
Query: 242 VAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNG 301
+A L + D ++R T LH AC H + + LL N + G
Sbjct: 27 LADKSLATRTDQDSR-----TALHWACS--------AGHTEIVEFLLQLGVPVNDKDDAG 73
Query: 302 FTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPD 361
++PLHIA R ++V+ LL GA + A ++G TPLH A+ IA+ LL+ GA PD
Sbjct: 74 WSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 362 TATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSAL 421
T +H AA ++ ILL AS + + E TPLH+A R A
Sbjct: 134 AKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEA----- 188
Query: 422 TRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVA 466
++L+ GAS+ +E++TPL VA
Sbjct: 189 ---------------------KLLVSQGASIYIENKEEKTPLQVA 212
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 103/216 (47%), Gaps = 47/216 (21%)
Query: 369 TPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGET 428
T LH A A T+IV LL+ G V+ + +D G +
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDK--DDA------------------------GWS 75
Query: 429 PLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAP 488
PLH+AA A + +IV+ LL GA V+A + TPLH A+ +IA +LL+ GA+ DA
Sbjct: 76 PLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA- 134
Query: 489 TKDGY--TALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQ 546
KD Y TA+H +A +G ++ IL AS +G TPLHLA R++ A++L+
Sbjct: 135 -KDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVS 193
Query: 547 KDAPVDSQGKVASILTESGASITATTKKGFTPLHLA 582
+ GASI K+ TPL +A
Sbjct: 194 Q-----------------GASIYIENKEEKTPLQVA 212
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 78/159 (49%)
Query: 639 KNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGA 698
++ T LH A +I LL+ N + AG++PLH++A G ++ L+ GA
Sbjct: 38 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGA 97
Query: 699 TVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRY 758
V+ +NG TPLH A +++ +A + + GA D T +H A+ G L M+
Sbjct: 98 QVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHI 157
Query: 759 LVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGA 797
L+ A+ N G TPLH A + RV LL+ GA
Sbjct: 158 LLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGA 196
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 86/180 (47%), Gaps = 1/180 (0%)
Query: 610 TPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNA 669
T LH A H + LL G + G++PLHIAA + +I LL A+ NA
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 101
Query: 670 ESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFN 729
++ G TPLH +A + +++ +L+E GA + T +H A + + + I ++
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYY 161
Query: 730 GAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLII 789
A + G TPLH+A ++ + LV GA++ TPL Q ++ G LI+
Sbjct: 162 KASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPL-QVAKGGLGLIL 220
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 80/164 (48%)
Query: 71 ATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNIT 130
+ G E+ + L+ G +N + G++PL++AA D +V+ LL KG ++ T
Sbjct: 49 SAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCT 108
Query: 131 PLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSK 190
PLH A + + +L+ GAN +AK T +H AA G+ +I IL+ A+ +
Sbjct: 109 PLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQ 168
Query: 191 TKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVA 234
G PLH+A + ++L+ GA + + T L VA
Sbjct: 169 DTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 212
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 67/134 (50%)
Query: 71 ATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNIT 130
+ G++E+ K L+ GA +N + NG TPL+ AA +N + LL G N + T
Sbjct: 82 SAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEAT 141
Query: 131 PLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSK 190
+H A G + M+ +L+ A+ + +G TPLH A +L+ +GA++Y +
Sbjct: 142 AMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIE 201
Query: 191 TKNGLAPLHMASQG 204
K PL +A G
Sbjct: 202 NKEEKTPLQVAKGG 215
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 67/125 (53%)
Query: 676 TPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDP 735
T LH + GHT++ L++ G V+ + G +PLH+ A + + + GA+++
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 101
Query: 736 VTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGA 795
V + G TPLH A+ + + L+E GAN +A + T +H+A+ +G + +I +LL
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYY 161
Query: 796 GAQPN 800
A N
Sbjct: 162 KASTN 166
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 48/93 (51%)
Query: 709 TPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNA 768
T LH + + G ++ AG++PLHIA+ G+ +V+ L+ GA VNA
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 101
Query: 769 TTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNA 801
G TPLH A+ + R I +LL GA P+A
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA 134
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 36/66 (54%)
Query: 742 TPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNA 801
T LH A G +V +L++ G VN + G++PLH A+ GR I+ LLG GAQ NA
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 101
Query: 802 TTNLFC 807
C
Sbjct: 102 VNQNGC 107
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 113 bits (283), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 82/126 (65%)
Query: 433 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDG 492
AARA Q D VRIL+ NGA V+A TPLH+A+ G+ +I +LL+HGA VDA G
Sbjct: 21 AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFG 80
Query: 493 YTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVD 552
YT LH++A G E+ +L ++GA + A G TPLHLAAK+G ++I ++LL+ A V+
Sbjct: 81 YTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVN 140
Query: 553 SQGKVA 558
+Q K
Sbjct: 141 AQDKFG 146
Score = 103 bits (257), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 82/141 (58%)
Query: 553 SQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPL 612
Q IL +GA + A G TPLHLAA G ++I ++LL+ A VD+ G TPL
Sbjct: 25 GQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPL 84
Query: 613 HVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESK 672
H+A+++ H + +LL GA +A+ +G TPLH+AAK ++I LL++ A NA+ K
Sbjct: 85 HLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDK 144
Query: 673 AGFTPLHLSAQEGHTDMSSLL 693
G T +S G+ D++ +L
Sbjct: 145 FGKTAFDISIDNGNEDLAEIL 165
Score = 103 bits (256), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 92/171 (53%), Gaps = 26/171 (15%)
Query: 374 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLA 433
AARA Q D VRIL+ NGA V+A D T G TPLHLA
Sbjct: 21 AARAGQDDEVRILMANGADVNAA---DNT-----------------------GTTPLHLA 54
Query: 434 ARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGY 493
A + +IV +LL++GA VDA TPLH+A+ G+ +I +LL++GA V+A DG
Sbjct: 55 AYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGM 114
Query: 494 TALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
T LH++AK G E+ +L + GA + A K G T ++ G +A++L
Sbjct: 115 TPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 90/166 (54%), Gaps = 17/166 (10%)
Query: 499 SAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVA 558
+A+ GQD+ IL +GA + A G TPLHLAA G ++I ++LL+
Sbjct: 21 AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKH----------- 69
Query: 559 SILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHY 618
GA + A+ G+TPLHLAA +G ++I ++LL+ A V++ +G+TPLH+A+ +
Sbjct: 70 ------GADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKW 123
Query: 619 DHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYN 664
+ + +LL GA +A K G T I+ D+A L + N
Sbjct: 124 GYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 96.3 bits (238), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 81/141 (57%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
GQ++ +IL+ NGA +N G TPL++AA H +V LL G + + TPL
Sbjct: 25 GQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPL 84
Query: 133 HVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTK 192
H+A WG + +VE+L+ GA++ A DG+TPLH AA+ G+ ++++L++ GA + ++ K
Sbjct: 85 HLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDK 144
Query: 193 NGLAPLHMASQGDHEAATRVL 213
G ++ +E +L
Sbjct: 145 FGKTAFDISIDNGNEDLAEIL 165
Score = 95.9 bits (237), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 82/139 (58%), Gaps = 1/139 (0%)
Query: 681 SAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAG 740
+A+ G D +L+ +GA V+ G TPLHL A + + + + +GA++D G
Sbjct: 21 AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFG 80
Query: 741 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 800
+TPLH+A+++G L +V L++NGA+VNA + G TPLH A++ G + I+++LL GA N
Sbjct: 81 YTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVN 140
Query: 801 ATTNLFCCA-TILVKNGAE 818
A A I + NG E
Sbjct: 141 AQDKFGKTAFDISIDNGNE 159
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 79/145 (54%)
Query: 648 AAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNG 707
AA+ Q D L+ A NA G TPLHL+A GH ++ +L++HGA V G
Sbjct: 21 AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFG 80
Query: 708 LTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVN 767
TPLHL A + + + + NGA+++ + G TPLH+A+ +G L +V L+++GA+VN
Sbjct: 81 YTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVN 140
Query: 768 ATTNLGYTPLHQASQQGRVLIIDLL 792
A G T + G + ++L
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 88/171 (51%), Gaps = 26/171 (15%)
Query: 308 ACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRG 367
A + + V +L+ GA + A +G TPLH+A++ G + I LL+ GA D + V G
Sbjct: 21 AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFG 80
Query: 368 ETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGE 427
TPLHLAA +IV +LL+NGA V+A + TP
Sbjct: 81 YTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTP------------------------ 116
Query: 428 TPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLL 478
LHLAA+ +IV +LL++GA V+A+ + +T ++ GN D+A +L
Sbjct: 117 --LHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 74/123 (60%)
Query: 285 KTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFM 344
+ L+ AD NA G TPLH+A ++VE+LLK+GA + A+ G TPLH+A++
Sbjct: 31 RILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYW 90
Query: 345 GCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPL 404
G + I LL+ GA + G TPLHLAA+ +IV +LL++GA V+A+ + +T
Sbjct: 91 GHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAF 150
Query: 405 HVA 407
++
Sbjct: 151 DIS 153
Score = 89.7 bits (221), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 79/144 (54%)
Query: 582 AAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNG 641
AA+ G+ ++L+ A V++ G TPLH+A++ H + +LL GA A G
Sbjct: 21 AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFG 80
Query: 642 YTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVS 701
YTPLH+AA ++I LL+ A NA G TPLHL+A+ G+ ++ +L++HGA V+
Sbjct: 81 YTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVN 140
Query: 702 HQAKNGLTPLHLCAQEDKVNVATI 725
Q K G T + ++A I
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEI 164
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 79/155 (50%), Gaps = 8/155 (5%)
Query: 168 AARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDY 227
AAR+G D+ + IL+ GA + + G PLH+A+ H VL+ HGA VD V
Sbjct: 21 AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFG 80
Query: 228 LTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTL 287
T LH+A++ GH+ + + LL AD NA +G TPLH+A K ++ + + L
Sbjct: 81 YTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAK--------WGYLEIVEVL 132
Query: 288 LDRKADPNARALNGFTPLHIACKKNRYKVVELLLK 322
L AD NA+ G T I+ + E+L K
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 76/134 (56%)
Query: 626 LLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEG 685
+L+ GA +A G TPLH+AA ++I LL++ A +A G+TPLHL+A G
Sbjct: 32 ILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWG 91
Query: 686 HTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLH 745
H ++ +L+++GA V+ +G+TPLHL A+ + + + + +GA+++ K G T
Sbjct: 92 HLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFD 151
Query: 746 IASHFGQLNMVRYL 759
I+ G ++ L
Sbjct: 152 ISIDNGNEDLAEIL 165
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 82/148 (55%)
Query: 99 LYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKT 158
L AA+ D VR L++ G + A TPLH+A G + +VE+L+ GA+++A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASD 77
Query: 159 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGA 218
G TPLH AA GH ++++L++ GA + + +G+ PLH+A++ + VL+ HGA
Sbjct: 78 VFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGA 137
Query: 219 GVDEITVDYLTALHVASHCGHVRVAKTL 246
V+ TA ++ G+ +A+ L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 77/153 (50%), Gaps = 8/153 (5%)
Query: 234 ASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKAD 293
A+ G + L+ AD NA G TPLH+A ++ H+ + + LL AD
Sbjct: 21 AARAGQDDEVRILMANGADVNAADNTGTTPLHLA--------AYSGHLEIVEVLLKHGAD 72
Query: 294 PNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFL 353
+A + G+TPLH+A ++VE+LLK GA + A G+TPLH+A+ G + I L
Sbjct: 73 VDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVL 132
Query: 354 LQAGAAPDTATVRGETPLHLAARANQTDIVRIL 386
L+ GA + G+T ++ D+ IL
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 76/134 (56%)
Query: 135 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNG 194
A + G+ V +L++ GA++ A G TPLH AA SGH ++++L++ GA + + G
Sbjct: 21 AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFG 80
Query: 195 LAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPN 254
PLH+A+ H VL+ +GA V+ + D +T LH+A+ G++ + + LL AD N
Sbjct: 81 YTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVN 140
Query: 255 ARALNGFTPLHIAC 268
A+ G T I+
Sbjct: 141 AQDKFGKTAFDISI 154
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 66/109 (60%)
Query: 72 TGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITP 131
+G E+ ++L+ +GA ++ + G+TPL++AA H +V LL G + +TP
Sbjct: 57 SGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTP 116
Query: 132 LHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 180
LH+A KWG + +VE+L+ GA++ A+ + G T + +G++++ +IL
Sbjct: 117 LHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 113 bits (282), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 58/126 (46%), Positives = 84/126 (66%)
Query: 433 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDG 492
AARA Q D VRIL+ NGA V+AR TPLH+A+ G+ +I +LL++GA V+A G
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLG 80
Query: 493 YTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVD 552
T LH++A+ G E+ +L ++GA + A+ GFTPLHLAAK G ++I ++LL+ A V+
Sbjct: 81 VTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVN 140
Query: 553 SQGKVA 558
+Q K
Sbjct: 141 AQDKFG 146
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 95/171 (55%), Gaps = 26/171 (15%)
Query: 374 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLA 433
AARA Q D VRIL+ NGA V+AR D T G TPLHLA
Sbjct: 21 AARAGQDDEVRILMANGADVNAR---DFT-----------------------GWTPLHLA 54
Query: 434 ARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGY 493
A +IV +LL+NGA V+A+ TPLH+A+R G+ +I +LL++GA V+A G+
Sbjct: 55 AHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGF 114
Query: 494 TALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
T LH++AK G E+ +L ++GA + A K G T ++ G +A++L
Sbjct: 115 TPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 105 bits (262), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 84/141 (59%)
Query: 553 SQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPL 612
Q IL +GA + A G+TPLHLAA +G ++I ++LL+ A V+++ GVTPL
Sbjct: 25 GQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPL 84
Query: 613 HVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESK 672
H+A+ H + +LL GA +A +G+TPLH+AAK+ ++I LL+ A NA+ K
Sbjct: 85 HLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDK 144
Query: 673 AGFTPLHLSAQEGHTDMSSLL 693
G T +S G+ D++ +L
Sbjct: 145 FGKTAFDISIDNGNEDLAEIL 165
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 89/166 (53%), Gaps = 17/166 (10%)
Query: 499 SAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVA 558
+A+ GQD+ IL +GA + A G+TPLHLAA +G ++I ++LL+
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLK------------ 68
Query: 559 SILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHY 618
+GA + A G TPLHLAA+ G ++I ++LL+ A V++ +G TPLH+A+
Sbjct: 69 -----NGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKR 123
Query: 619 DHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYN 664
H + +LL GA +A K G T I+ D+A L + N
Sbjct: 124 GHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 83/145 (57%)
Query: 648 AAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNG 707
AA+ Q D L+ A NA G+TPLHL+A GH ++ +L+++GA V+ + G
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLG 80
Query: 708 LTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVN 767
+TPLHL A+ + + + + NGA+++ GFTPLH+A+ G L +V L++NGA+VN
Sbjct: 81 VTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVN 140
Query: 768 ATTNLGYTPLHQASQQGRVLIIDLL 792
A G T + G + ++L
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 84/144 (58%)
Query: 582 AAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNG 641
AA+ G+ ++L+ A V+++ G TPLH+A+H+ H + +LL GA +A G
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLG 80
Query: 642 YTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVS 701
TPLH+AA++ ++I LL+ A NA GFTPLHL+A+ GH ++ +L+++GA V+
Sbjct: 81 VTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVN 140
Query: 702 HQAKNGLTPLHLCAQEDKVNVATI 725
Q K G T + ++A I
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEI 164
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 81/141 (57%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
GQ++ +IL+ NGA +N + G+TPL++AA H +V LL G + +TPL
Sbjct: 25 GQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPL 84
Query: 133 HVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTK 192
H+A + G + +VE+L+ GA++ A G TPLH AA+ GH ++++L++ GA + ++ K
Sbjct: 85 HLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDK 144
Query: 193 NGLAPLHMASQGDHEAATRVL 213
G ++ +E +L
Sbjct: 145 FGKTAFDISIDNGNEDLAEIL 165
Score = 95.9 bits (237), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 75/123 (60%)
Query: 285 KTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFM 344
+ L+ AD NAR G+TPLH+A ++VE+LLK GA + A G+TPLH+A+
Sbjct: 31 RILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARR 90
Query: 345 GCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPL 404
G + I LL+ GA + + G TPLHLAA+ +IV +LL+NGA V+A+ + +T
Sbjct: 91 GHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAF 150
Query: 405 HVA 407
++
Sbjct: 151 DIS 153
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 83/139 (59%), Gaps = 1/139 (0%)
Query: 681 SAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAG 740
+A+ G D +L+ +GA V+ + G TPLHL A + + + + NGA+++ G
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLG 80
Query: 741 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 800
TPLH+A+ G L +V L++NGA+VNA+ + G+TPLH A+++G + I+++LL GA N
Sbjct: 81 VTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVN 140
Query: 801 ATTNLFCCA-TILVKNGAE 818
A A I + NG E
Sbjct: 141 AQDKFGKTAFDISIDNGNE 159
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 87/171 (50%), Gaps = 26/171 (15%)
Query: 308 ACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRG 367
A + + V +L+ GA + A +G TPLH+A+ G + I LL+ GA + G
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLG 80
Query: 368 ETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGE 427
TPLHLAAR +IV +LL+NGA V+A + G
Sbjct: 81 VTPLHLAARRGHLEIVEVLLKNGADVNA--------------------------SDSHGF 114
Query: 428 TPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLL 478
TPLHLAA+ +IV +LL+NGA V+A+ + +T ++ GN D+A +L
Sbjct: 115 TPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 80/153 (52%), Gaps = 8/153 (5%)
Query: 234 ASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKAD 293
A+ G + L+ AD NAR G+TPLH+A +H H+ + + LL AD
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLA--------AHFGHLEIVEVLLKNGAD 72
Query: 294 PNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFL 353
NA+ G TPLH+A ++ ++VE+LLK GA + A+ G TPLH+A+ G + I L
Sbjct: 73 VNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVL 132
Query: 354 LQAGAAPDTATVRGETPLHLAARANQTDIVRIL 386
L+ GA + G+T ++ D+ IL
Sbjct: 133 LKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 76/134 (56%)
Query: 626 LLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEG 685
+L+ GA +A G+TPLH+AA ++I LL+ A NA+ G TPLHL+A+ G
Sbjct: 32 ILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRG 91
Query: 686 HTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLH 745
H ++ +L+++GA V+ +G TPLHL A+ + + + + NGA+++ K G T
Sbjct: 92 HLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFD 151
Query: 746 IASHFGQLNMVRYL 759
I+ G ++ L
Sbjct: 152 ISIDNGNEDLAEIL 165
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 83/148 (56%)
Query: 99 LYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKT 158
L AA+ D VR L++ G + TPLH+A +G + +VE+L+ GA++ AK
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKD 77
Query: 159 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGA 218
G+TPLH AAR GH ++++L++ GA + + +G PLH+A++ H VL+ +GA
Sbjct: 78 SLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGA 137
Query: 219 GVDEITVDYLTALHVASHCGHVRVAKTL 246
V+ TA ++ G+ +A+ L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 81/155 (52%), Gaps = 8/155 (5%)
Query: 168 AARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDY 227
AAR+G D+ + IL+ GA + ++ G PLH+A+ H VL+ +GA V+
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLG 80
Query: 228 LTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTL 287
+T LH+A+ GH+ + + LL AD NA +GFTPLH+A K+ H+ + + L
Sbjct: 81 VTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKR--------GHLEIVEVL 132
Query: 288 LDRKADPNARALNGFTPLHIACKKNRYKVVELLLK 322
L AD NA+ G T I+ + E+L K
Sbjct: 133 LKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 76/134 (56%)
Query: 135 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNG 194
A + G+ V +L++ GA++ A+ G TPLH AA GH ++++L++ GA + +K G
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLG 80
Query: 195 LAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPN 254
+ PLH+A++ H VL+ +GA V+ T LH+A+ GH+ + + LL AD N
Sbjct: 81 VTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVN 140
Query: 255 ARALNGFTPLHIAC 268
A+ G T I+
Sbjct: 141 AQDKFGKTAFDISI 154
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 112 bits (280), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 82/126 (65%)
Query: 433 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDG 492
AARA Q D VRIL+ NGA V+A + TPLH+A+ +G+ +I +LL+HGA V+A DG
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG 80
Query: 493 YTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVD 552
+T LH++A G E+ +L + GA + A G TPLHLAA G ++I ++LL+ A V+
Sbjct: 81 WTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVN 140
Query: 553 SQGKVA 558
+Q K
Sbjct: 141 AQDKFG 146
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/171 (37%), Positives = 91/171 (53%), Gaps = 26/171 (15%)
Query: 374 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLA 433
AARA Q D VRIL+ NGA D A +DQ G TPLHLA
Sbjct: 21 AARAGQDDEVRILMANGA--DVNAHDDQ------------------------GSTPLHLA 54
Query: 434 ARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGY 493
A +IV +LL++GA V+AR + TPLH+A+ G+ +I +LL++GA V+A G
Sbjct: 55 AWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGL 114
Query: 494 TALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
T LH++A G E+ +L + GA + A K G T ++ G +A++L
Sbjct: 115 TPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 81/144 (56%)
Query: 582 AAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNG 641
AA+ G+ ++L+ A V++ G TPLH+A+ H + +LL GA +A +G
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG 80
Query: 642 YTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVS 701
+TPLH+AA ++I LL+Y A NA+ G TPLHL+A GH ++ +L++HGA V+
Sbjct: 81 WTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVN 140
Query: 702 HQAKNGLTPLHLCAQEDKVNVATI 725
Q K G T + ++A I
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEI 164
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 87/166 (52%), Gaps = 17/166 (10%)
Query: 499 SAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVA 558
+A+ GQD+ IL +GA + A +G TPLHLAA G +I ++LL+
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKH----------- 69
Query: 559 SILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHY 618
GA + A G+TPLHLAA G ++I ++LL+ A V++Q G+TPLH+A+
Sbjct: 70 ------GADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADR 123
Query: 619 DHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYN 664
H + +LL GA +A K G T I+ D+A L + N
Sbjct: 124 GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 80/141 (56%)
Query: 553 SQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPL 612
Q IL +GA + A +G TPLHLAA G +I ++LL+ A V+++ +G TPL
Sbjct: 25 GQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPL 84
Query: 613 HVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESK 672
H+A+ H + +LL GA +A G TPLH+AA + ++I LL++ A NA+ K
Sbjct: 85 HLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDK 144
Query: 673 AGFTPLHLSAQEGHTDMSSLL 693
G T +S G+ D++ +L
Sbjct: 145 FGKTAFDISIDNGNEDLAEIL 165
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 79/145 (54%)
Query: 648 AAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNG 707
AA+ Q D L+ A NA G TPLHL+A GH ++ +L++HGA V+ + +G
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG 80
Query: 708 LTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVN 767
TPLHL A + + + + GA+++ G TPLH+A+ G L +V L+++GA+VN
Sbjct: 81 WTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVN 140
Query: 768 ATTNLGYTPLHQASQQGRVLIIDLL 792
A G T + G + ++L
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 89.4 bits (220), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 77/155 (49%), Gaps = 8/155 (5%)
Query: 234 ASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKAD 293
A+ G + L+ AD NA G TPLH+A H + + LL AD
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAW--------IGHPEIVEVLLKHGAD 72
Query: 294 PNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFL 353
NAR +G+TPLH+A ++VE+LLKYGA + A GLTPLH+A+ G + I L
Sbjct: 73 VNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVL 132
Query: 354 LQAGAAPDTATVRGETPLHLAARANQTDIVRILLR 388
L+ GA + G+T ++ D+ IL +
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 78/141 (55%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
GQ++ +IL+ NGA +N G TPL++AA H +V LL G + TPL
Sbjct: 25 GQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPL 84
Query: 133 HVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTK 192
H+A G + +VE+L+ GA++ A+ GLTPLH AA GH ++++L++ GA + ++ K
Sbjct: 85 HLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDK 144
Query: 193 NGLAPLHMASQGDHEAATRVL 213
G ++ +E +L
Sbjct: 145 FGKTAFDISIDNGNEDLAEIL 165
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 82/148 (55%)
Query: 99 LYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKT 158
L AA+ D VR L++ G + + TPLH+A G +VE+L+ GA++ A+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARD 77
Query: 159 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGA 218
DG TPLH AA +GH ++++L++ GA + ++ GL PLH+A+ H VL+ HGA
Sbjct: 78 TDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGA 137
Query: 219 GVDEITVDYLTALHVASHCGHVRVAKTL 246
V+ TA ++ G+ +A+ L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 86.3 bits (212), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 74/134 (55%)
Query: 626 LLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEG 685
+L+ GA +A G TPLH+AA +I LL++ A NA G+TPLHL+A G
Sbjct: 32 ILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNG 91
Query: 686 HTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLH 745
H ++ +L+++GA V+ Q GLTPLHL A + + + + +GA+++ K G T
Sbjct: 92 HLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFD 151
Query: 746 IASHFGQLNMVRYL 759
I+ G ++ L
Sbjct: 152 ISIDNGNEDLAEIL 165
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 71/123 (57%)
Query: 285 KTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFM 344
+ L+ AD NA G TPLH+A ++VE+LLK+GA + A G TPLH+A+
Sbjct: 31 RILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADN 90
Query: 345 GCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPL 404
G + I LL+ GA + G TPLHLAA +IV +LL++GA V+A+ + +T
Sbjct: 91 GHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAF 150
Query: 405 HVA 407
++
Sbjct: 151 DIS 153
Score = 85.9 bits (211), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 85/171 (49%), Gaps = 26/171 (15%)
Query: 308 ACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRG 367
A + + V +L+ GA + A + G TPLH+A+++G I LL+ GA + G
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG 80
Query: 368 ETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGE 427
TPLHLAA +IV +LL+ GA V+A+ G
Sbjct: 81 WTPLHLAADNGHLEIVEVLLKYGADVNAQ--------------------------DAYGL 114
Query: 428 TPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLL 478
TPLHLAA +IV +LL++GA V+A+ + +T ++ GN D+A +L
Sbjct: 115 TPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 77/139 (55%), Gaps = 1/139 (0%)
Query: 681 SAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAG 740
+A+ G D +L+ +GA V+ G TPLHL A + + + +GA+++ G
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG 80
Query: 741 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 800
+TPLH+A+ G L +V L++ GA+VNA G TPLH A+ +G + I+++LL GA N
Sbjct: 81 WTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVN 140
Query: 801 ATTNLFCCA-TILVKNGAE 818
A A I + NG E
Sbjct: 141 AQDKFGKTAFDISIDNGNE 159
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 78/155 (50%), Gaps = 8/155 (5%)
Query: 168 AARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDY 227
AAR+G D+ + IL+ GA + + G PLH+A+ H VL+ HGA V+ D
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG 80
Query: 228 LTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTL 287
T LH+A+ GH+ + + LL AD NA+ G TPLH+A + H+ + + L
Sbjct: 81 WTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADR--------GHLEIVEVL 132
Query: 288 LDRKADPNARALNGFTPLHIACKKNRYKVVELLLK 322
L AD NA+ G T I+ + E+L K
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 82.4 bits (202), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 75/134 (55%)
Query: 135 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNG 194
A + G+ V +L++ GA++ A G TPLH AA GH ++++L++ GA + ++ +G
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG 80
Query: 195 LAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPN 254
PLH+A+ H VL+ +GA V+ LT LH+A+ GH+ + + LL AD N
Sbjct: 81 WTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVN 140
Query: 255 ARALNGFTPLHIAC 268
A+ G T I+
Sbjct: 141 AQDKFGKTAFDISI 154
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 96/179 (53%)
Query: 569 TATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLL 628
T T + T LH A G +I + LLQ PV+ + G +PLH+A+ + LL
Sbjct: 34 TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL 93
Query: 629 DRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTD 688
+GA +AV +NG TPLH AA KN+ +IA LLE A P+A+ T +H +A +G+
Sbjct: 94 VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLK 153
Query: 689 MSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIA 747
M +L+ + A+ + Q G TPLHL E++V A + GA I K TPL +A
Sbjct: 154 MVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 102/209 (48%), Gaps = 17/209 (8%)
Query: 505 DEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTES 564
DE+ + + T T + T LH A G +I + LLQ PV+ +
Sbjct: 20 DELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA------- 72
Query: 565 GASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVA 624
G++PLH+AA GR +I + LL K A V++ +NG TPLH A+ + +A
Sbjct: 73 ----------GWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIA 122
Query: 625 LLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQE 684
++LL+ GA+P A T +H AA K + + LL Y A N + G TPLHL+ E
Sbjct: 123 VMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDE 182
Query: 685 GHTDMSSLLIEHGATVSHQAKNGLTPLHL 713
+ + L+ GA++ + K TPL +
Sbjct: 183 ERVEEAKFLVTQGASIYIENKEEKTPLQV 211
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 94/203 (46%), Gaps = 26/203 (12%)
Query: 330 TTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRN 389
T + T LH A G I FLLQ G + G +PLH+AA A + +IV+ LL
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVK 95
Query: 390 GASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNG 449
GA V+A G TPLH AA N+ +I +LL G
Sbjct: 96 GAHVNA--------------------------VNQNGCTPLHYAASKNRHEIAVMLLEGG 129
Query: 450 ASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVAS 509
A+ DA+ D T +H A+ GN + +LL + AS + +G T LH++ E + E A
Sbjct: 130 ANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAK 189
Query: 510 ILTESGASITATTKKGFTPLHLA 532
L GASI K+ TPL +A
Sbjct: 190 FLVTQGASIYIENKEEKTPLQVA 212
Score = 93.2 bits (230), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 98/205 (47%), Gaps = 17/205 (8%)
Query: 411 RRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLG 470
R + S + T T LH A A T+IV LL+ G V+ + +PLH+A+ G
Sbjct: 25 RILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAG 84
Query: 471 NGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLH 530
+I LL GA V+A ++G T LH +A + + E+A +L E GA+ A T +H
Sbjct: 85 RDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMH 144
Query: 531 LAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKI 590
AA G +K+ +LL A + Q +G TPLHLA R++
Sbjct: 145 RAAAKGNLKMVHILLFYKASTNIQ-----------------DTEGNTPLHLACDEERVEE 187
Query: 591 AQMLLQKDAPVDSQGKNGVTPLHVA 615
A+ L+ + A + + K TPL VA
Sbjct: 188 AKFLVTQGASIYIENKEEKTPLQVA 212
Score = 89.7 bits (221), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 96/224 (42%), Gaps = 42/224 (18%)
Query: 262 TPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLL 321
T LH AC H + + LL N + G++PLHIA R ++V+ LL
Sbjct: 42 TALHWACS--------AGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL 93
Query: 322 KYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTD 381
GA + A ++G TPLH A+ IA+ LL+ GA PD T +H AA
Sbjct: 94 VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLK 153
Query: 382 IVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDI 441
+V ILL AS + + E TPLH+A R A
Sbjct: 154 MVHILLFYKASTNIQDTEGNTPLHLACDEERVEEA------------------------- 188
Query: 442 VRILLRNGASVDARAREDQTPLHVA--------SRLGNGDIASL 477
+ L+ GAS+ +E++TPL VA RL G+ AS+
Sbjct: 189 -KFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEASM 231
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 98/193 (50%), Gaps = 13/193 (6%)
Query: 120 NQTLAT---EHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNV 176
+++LAT + + T LH AC G +VE L+ G + K G +PLH AA +G D +
Sbjct: 29 DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEI 88
Query: 177 IDILIEKGAALYSKTKNGLAPLHMA-SQGDHEAATRVLIYHGAGVDEITVDYLTALHVAS 235
+ L+ KGA + + +NG PLH A S+ HE A +L+ GA D TA+H A+
Sbjct: 89 VKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAV-MLLEGGANPDAKDHYDATAMHRAA 147
Query: 236 HCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPN 295
G++++ LL KA N + G TPLH+AC + R + AK L+ + A
Sbjct: 148 AKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEE--------AKFLVTQGASIY 199
Query: 296 ARALNGFTPLHIA 308
TPL +A
Sbjct: 200 IENKEEKTPLQVA 212
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 77/159 (48%)
Query: 639 KNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGA 698
++ T LH A +I LL+ N + AG++PLH++A G ++ L+ GA
Sbjct: 38 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGA 97
Query: 699 TVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRY 758
V+ +NG TPLH A +++ +A + + GA D T +H A+ G L MV
Sbjct: 98 HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHI 157
Query: 759 LVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGA 797
L+ A+ N G TPLH A + RV L+ GA
Sbjct: 158 LLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGA 196
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 87/183 (47%), Gaps = 1/183 (0%)
Query: 610 TPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNA 669
T LH A H + LL G + G++PLHIAA + +I LL A NA
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNA 101
Query: 670 ESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFN 729
++ G TPLH +A + +++ +L+E GA + T +H A + + + I +F
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFY 161
Query: 730 GAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLII 789
A + G TPLH+A ++ ++LV GA++ TPL Q ++ G LI+
Sbjct: 162 KASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPL-QVAKGGLGLIL 220
Query: 790 DLL 792
L
Sbjct: 221 KRL 223
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 80/164 (48%)
Query: 71 ATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNIT 130
+ G E+ + L+ G +N + G++PL++AA D +V+ LL KG + ++ T
Sbjct: 49 SAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCT 108
Query: 131 PLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSK 190
PLH A + + +L+ GAN +AK T +H AA G+ ++ IL+ A+ +
Sbjct: 109 PLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQ 168
Query: 191 TKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVA 234
G PLH+A + + L+ GA + + T L VA
Sbjct: 169 DTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 67/134 (50%)
Query: 71 ATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNIT 130
+ G++E+ K L+ GA +N + NG TPL+ AA +N + LL G N ++ T
Sbjct: 82 SAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDAT 141
Query: 131 PLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSK 190
+H A G + MV +L+ A+ + +G TPLH A L+ +GA++Y +
Sbjct: 142 AMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIE 201
Query: 191 TKNGLAPLHMASQG 204
K PL +A G
Sbjct: 202 NKEEKTPLQVAKGG 215
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 66/125 (52%)
Query: 676 TPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDP 735
T LH + GHT++ L++ G V+ + G +PLH+ A + + + GA ++
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNA 101
Query: 736 VTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGA 795
V + G TPLH A+ + + L+E GAN +A + T +H+A+ +G + ++ +LL
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFY 161
Query: 796 GAQPN 800
A N
Sbjct: 162 KASTN 166
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 49/93 (52%)
Query: 709 TPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNA 768
T LH + + G ++ AG++PLHIA+ G+ +V+ L+ GA+VNA
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNA 101
Query: 769 TTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNA 801
G TPLH A+ + R I +LL GA P+A
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA 134
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%)
Query: 742 TPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNA 801
T LH A G +V +L++ G VN + G++PLH A+ GR I+ LL GA NA
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNA 101
Query: 802 TTNLFC 807
C
Sbjct: 102 VNQNGC 107
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 96/179 (53%)
Query: 569 TATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLL 628
T T + T LH A G +I + LLQ PV+ + G +PLH+A+ + LL
Sbjct: 34 TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALL 93
Query: 629 DRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTD 688
+GA +AV +NG TPLH AA KN+ +IA LLE A P+A+ T +H +A +G+
Sbjct: 94 VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLK 153
Query: 689 MSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIA 747
M +L+ + A+ + Q G TPLHL E++V A + GA I K TPL +A
Sbjct: 154 MVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 101/209 (48%), Gaps = 17/209 (8%)
Query: 505 DEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTES 564
DE+ + + T T + T LH A G +I + LLQ PV+ +
Sbjct: 20 DELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA------- 72
Query: 565 GASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVA 624
G++PLH+AA G +I + LL K A V++ +NG TPLH A+ + +A
Sbjct: 73 ----------GWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIA 122
Query: 625 LLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQE 684
++LL+ GA+P A T +H AA K + + LL Y A N + G TPLHL+ E
Sbjct: 123 VMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDE 182
Query: 685 GHTDMSSLLIEHGATVSHQAKNGLTPLHL 713
+ + L+ GA++ + K TPL +
Sbjct: 183 ERVEEAKFLVTQGASIYIENKEEKTPLQV 211
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 98/201 (48%), Gaps = 13/201 (6%)
Query: 226 DYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAK 285
D TALH A GH + + LL N + G++PLHIA + + K
Sbjct: 39 DSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDE--------IVK 90
Query: 286 TLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMG 345
LL + A NA NG TPLH A KNR+++ +LL+ GA+ A T +H A+ G
Sbjct: 91 ALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKG 150
Query: 346 CMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLH 405
+ + LL A+ + G TPLHLA + + + L+ GAS+ +E++TPL
Sbjct: 151 NLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQ 210
Query: 406 VASR-----LRRFSSASQSAL 421
VA L+R + ++++
Sbjct: 211 VAKGGLGLILKRLAEGEEASM 231
Score = 93.6 bits (231), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 93/203 (45%), Gaps = 26/203 (12%)
Query: 330 TTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRN 389
T + T LH A G I FLLQ G + G +PLH+AA A +IV+ LL
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVK 95
Query: 390 GASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNG 449
GA V+A G TPLH AA N+ +I +LL G
Sbjct: 96 GAHVNA--------------------------VNQNGCTPLHYAASKNRHEIAVMLLEGG 129
Query: 450 ASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVAS 509
A+ DA+ D T +H A+ GN + +LL + AS + +G T LH++ E + E A
Sbjct: 130 ANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAK 189
Query: 510 ILTESGASITATTKKGFTPLHLA 532
L GASI K+ TPL +A
Sbjct: 190 FLVTQGASIYIENKEEKTPLQVA 212
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 98/205 (47%), Gaps = 17/205 (8%)
Query: 411 RRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLG 470
R + S + T T LH A A T+IV LL+ G V+ + +PLH+A+ G
Sbjct: 25 RILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAG 84
Query: 471 NGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLH 530
+I LL GA V+A ++G T LH +A + + E+A +L E GA+ A T +H
Sbjct: 85 XDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMH 144
Query: 531 LAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKI 590
AA G +K+ +LL A + Q +G TPLHLA R++
Sbjct: 145 RAAAKGNLKMVHILLFYKASTNIQ-----------------DTEGNTPLHLACDEERVEE 187
Query: 591 AQMLLQKDAPVDSQGKNGVTPLHVA 615
A+ L+ + A + + K TPL VA
Sbjct: 188 AKFLVTQGASIYIENKEEKTPLQVA 212
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 98/193 (50%), Gaps = 13/193 (6%)
Query: 120 NQTLAT---EHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNV 176
+++LAT + + T LH AC G +VE L+ G + K G +PLH AA +G D +
Sbjct: 29 DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEI 88
Query: 177 IDILIEKGAALYSKTKNGLAPLHMA-SQGDHEAATRVLIYHGAGVDEITVDYLTALHVAS 235
+ L+ KGA + + +NG PLH A S+ HE A +L+ GA D TA+H A+
Sbjct: 89 VKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAV-MLLEGGANPDAKDHYDATAMHRAA 147
Query: 236 HCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPN 295
G++++ LL KA N + G TPLH+AC + R + AK L+ + A
Sbjct: 148 AKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEE--------AKFLVTQGASIY 199
Query: 296 ARALNGFTPLHIA 308
TPL +A
Sbjct: 200 IENKEEKTPLQVA 212
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 95/224 (42%), Gaps = 42/224 (18%)
Query: 262 TPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLL 321
T LH AC H + + LL N + G++PLHIA ++V+ LL
Sbjct: 42 TALHWACS--------AGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALL 93
Query: 322 KYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTD 381
GA + A ++G TPLH A+ IA+ LL+ GA PD T +H AA
Sbjct: 94 VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLK 153
Query: 382 IVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDI 441
+V ILL AS + + E TPLH+A R A
Sbjct: 154 MVHILLFYKASTNIQDTEGNTPLHLACDEERVEEA------------------------- 188
Query: 442 VRILLRNGASVDARAREDQTPLHVA--------SRLGNGDIASL 477
+ L+ GAS+ +E++TPL VA RL G+ AS+
Sbjct: 189 -KFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEASM 231
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 77/159 (48%)
Query: 639 KNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGA 698
++ T LH A +I LL+ N + AG++PLH++A G ++ L+ GA
Sbjct: 38 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGA 97
Query: 699 TVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRY 758
V+ +NG TPLH A +++ +A + + GA D T +H A+ G L MV
Sbjct: 98 HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHI 157
Query: 759 LVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGA 797
L+ A+ N G TPLH A + RV L+ GA
Sbjct: 158 LLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGA 196
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 86/183 (46%), Gaps = 1/183 (0%)
Query: 610 TPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNA 669
T LH A H + LL G + G++PLHIAA +I LL A NA
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNA 101
Query: 670 ESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFN 729
++ G TPLH +A + +++ +L+E GA + T +H A + + + I +F
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFY 161
Query: 730 GAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLII 789
A + G TPLH+A ++ ++LV GA++ TPL Q ++ G LI+
Sbjct: 162 KASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPL-QVAKGGLGLIL 220
Query: 790 DLL 792
L
Sbjct: 221 KRL 223
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 75/150 (50%)
Query: 71 ATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNIT 130
+ G E+ + L+ G +N + G++PL++AA D +V+ LL KG + ++ T
Sbjct: 49 SAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCT 108
Query: 131 PLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSK 190
PLH A + + +L+ GAN +AK T +H AA G+ ++ IL+ A+ +
Sbjct: 109 PLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQ 168
Query: 191 TKNGLAPLHMASQGDHEAATRVLIYHGAGV 220
G PLH+A + + L+ GA +
Sbjct: 169 DTEGNTPLHLACDEERVEEAKFLVTQGASI 198
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 66/134 (49%)
Query: 71 ATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNIT 130
+ G +E+ K L+ GA +N + NG TPL+ AA +N + LL G N ++ T
Sbjct: 82 SAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDAT 141
Query: 131 PLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSK 190
+H A G + MV +L+ A+ + +G TPLH A L+ +GA++Y +
Sbjct: 142 AMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIE 201
Query: 191 TKNGLAPLHMASQG 204
K PL +A G
Sbjct: 202 NKEEKTPLQVAKGG 215
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 65/125 (52%)
Query: 676 TPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDP 735
T LH + GHT++ L++ G V+ + G +PLH+ A + + GA ++
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNA 101
Query: 736 VTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGA 795
V + G TPLH A+ + + L+E GAN +A + T +H+A+ +G + ++ +LL
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFY 161
Query: 796 GAQPN 800
A N
Sbjct: 162 KASTN 166
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 48/93 (51%)
Query: 709 TPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNA 768
T LH + + G ++ AG++PLHIA+ G +V+ L+ GA+VNA
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNA 101
Query: 769 TTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNA 801
G TPLH A+ + R I +LL GA P+A
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA 134
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%)
Query: 742 TPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNA 801
T LH A G +V +L++ G VN + G++PLH A+ G I+ LL GA NA
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNA 101
Query: 802 TTNLFC 807
C
Sbjct: 102 VNQNGC 107
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 110 bits (275), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 59/147 (40%), Positives = 86/147 (58%)
Query: 72 TGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITP 131
G ++ K L++NGA +N +G TPL+ AA+ H VV+ L+SKG + TP
Sbjct: 14 NGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTP 73
Query: 132 LHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKT 191
LH A + G +V+LLISKGA++ AK DG TPLH AA +GH V+ +LI KGA + +
Sbjct: 74 LHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSD 133
Query: 192 KNGLAPLHMASQGDHEAATRVLIYHGA 218
+G PL +A + +E ++L G
Sbjct: 134 SDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 83/148 (56%)
Query: 99 LYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKT 158
L AA+ + V+ L+ G + + TPLH A + G +V+LLISKGA++ AK
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 67
Query: 159 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGA 218
DG TPLH AA +GH V+ +LI KGA + +K +G PLH A++ H+ ++LI GA
Sbjct: 68 SDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA 127
Query: 219 GVDEITVDYLTALHVASHCGHVRVAKTL 246
V+ D T L +A G+ V K L
Sbjct: 128 DVNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 96.3 bits (238), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 86/165 (52%), Gaps = 17/165 (10%)
Query: 433 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDG 492
AA D V+ L+ NGA V+A + +TPLH A+ G+ ++ LL+ GA V+A DG
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG 70
Query: 493 YTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVD 552
T LH +A+ G EV +L GA + A G TPLH AA+ G ++ ++L+ K
Sbjct: 71 RTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK----- 125
Query: 553 SQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQK 597
GA + + G TPL LA ++G ++ ++L ++
Sbjct: 126 ------------GADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQ 158
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 86/167 (51%), Gaps = 17/167 (10%)
Query: 466 ASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKG 525
A+ GN D L+++GA V+A DG T LH +A+ G EV +L GA + A G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG 70
Query: 526 FTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKY 585
TPLH AA+ G ++ ++L+ K GA + A G TPLH AA+
Sbjct: 71 RTPLHHAAENGHKEVVKLLISK-----------------GADVNAKDSDGRTPLHHAAEN 113
Query: 586 GRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGA 632
G ++ ++L+ K A V++ +G TPL +A + ++ V LL +G
Sbjct: 114 GHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 75/133 (56%)
Query: 135 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNG 194
A + G V+ LI GA++ A DG TPLH AA +GH V+ +LI KGA + +K +G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG 70
Query: 195 LAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPN 254
PLH A++ H+ ++LI GA V+ D T LH A+ GH V K L+ + AD N
Sbjct: 71 RTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN 130
Query: 255 ARALNGFTPLHIA 267
+G TPL +A
Sbjct: 131 TSDSDGRTPLDLA 143
Score = 93.2 bits (230), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 78/150 (52%)
Query: 648 AAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNG 707
AA+ D L+E A NA G TPLH +A+ GH ++ LLI GA V+ + +G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG 70
Query: 708 LTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVN 767
TPLH A+ V + + GA+++ G TPLH A+ G +V+ L+ GA+VN
Sbjct: 71 RTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN 130
Query: 768 ATTNLGYTPLHQASQQGRVLIIDLLLGAGA 797
+ + G TPL A + G ++ LL G
Sbjct: 131 TSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 87/174 (50%), Gaps = 26/174 (14%)
Query: 374 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLA 433
AA D V+ L+ NGA V+A + G TPLH A
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSD--------------------------GRTPLHHA 44
Query: 434 ARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGY 493
A ++V++L+ GA V+A+ + +TPLH A+ G+ ++ LL+ GA V+A DG
Sbjct: 45 AENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGR 104
Query: 494 TALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQK 547
T LH +A+ G EV +L GA + + G TPL LA ++G ++ ++L ++
Sbjct: 105 TPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQ 158
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 78/138 (56%)
Query: 561 LTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDH 620
L E+GA + A+ G TPLH AA+ G ++ ++L+ K A V+++ +G TPLH A+ H
Sbjct: 23 LIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGH 82
Query: 621 QNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHL 680
+ V LL+ +GA +A +G TPLH AA+ ++ L+ A N G TPL L
Sbjct: 83 KEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDL 142
Query: 681 SAQEGHTDMSSLLIEHGA 698
+ + G+ ++ LL + G
Sbjct: 143 AREHGNEEVVKLLEKQGG 160
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 80/158 (50%), Gaps = 8/158 (5%)
Query: 234 ASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKAD 293
A+ G+ K L++ AD NA +G TPLH A + H V K L+ + AD
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENG--------HKEVVKLLISKGAD 62
Query: 294 PNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFL 353
NA+ +G TPLH A + +VV+LL+ GA + A G TPLH A+ G + L
Sbjct: 63 VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLL 122
Query: 354 LQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGA 391
+ GA +T+ G TPL LA ++V++L + G
Sbjct: 123 ISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 84/160 (52%), Gaps = 8/160 (5%)
Query: 168 AARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDY 227
AA +G+ + + LIE GA + + +G PLH A++ H+ ++LI GA V+ D
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG 70
Query: 228 LTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTL 287
T LH A+ GH V K L+ + AD NA+ +G TPLH A + H V K L
Sbjct: 71 RTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAEN--------GHKEVVKLL 122
Query: 288 LDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASI 327
+ + AD N +G TPL +A + +VV+LL K G +
Sbjct: 123 ISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWL 162
Score = 86.7 bits (213), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 83/162 (51%), Gaps = 17/162 (10%)
Query: 499 SAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVA 558
+A+ G + L E+GA + A+ G TPLH AA+ G ++ ++L+ K
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISK----------- 59
Query: 559 SILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHY 618
GA + A G TPLH AA+ G ++ ++L+ K A V+++ +G TPLH A+
Sbjct: 60 ------GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAEN 113
Query: 619 DHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTL 660
H+ V LL+ +GA + +G TPL +A + ++ L
Sbjct: 114 GHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 74/135 (54%)
Query: 582 AAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNG 641
AA+ G + L++ A V++ +G TPLH A+ H+ V LL+ +GA +A +G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG 70
Query: 642 YTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVS 701
TPLH AA+ ++ L+ A NA+ G TPLH +A+ GH ++ LLI GA V+
Sbjct: 71 RTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN 130
Query: 702 HQAKNGLTPLHLCAQ 716
+G TPL L +
Sbjct: 131 TSDSDGRTPLDLARE 145
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 73/138 (52%)
Query: 627 LLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGH 686
L++ GA +A +G TPLH AA+ ++ L+ A NA+ G TPLH +A+ GH
Sbjct: 23 LIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGH 82
Query: 687 TDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHI 746
++ LLI GA V+ + +G TPLH A+ V + + GA+++ G TPL +
Sbjct: 83 KEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDL 142
Query: 747 ASHFGQLNMVRYLVENGA 764
A G +V+ L + G
Sbjct: 143 AREHGNEEVVKLLEKQGG 160
Score = 82.4 bits (202), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 68/122 (55%)
Query: 681 SAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAG 740
+A+ G+ D LIE+GA V+ +G TPLH A+ V + + GA+++ G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG 70
Query: 741 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 800
TPLH A+ G +V+ L+ GA+VNA + G TPLH A++ G ++ LL+ GA N
Sbjct: 71 RTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN 130
Query: 801 AT 802
+
Sbjct: 131 TS 132
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 87/178 (48%), Gaps = 26/178 (14%)
Query: 341 ASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARARED 400
A+ G + L++ GA + + G TPLH AA ++V++L+ GA V+A+ +
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSD- 69
Query: 401 QTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQ 460
G TPLH AA ++V++L+ GA V+A+ + +
Sbjct: 70 -------------------------GRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGR 104
Query: 461 TPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASI 518
TPLH A+ G+ ++ LL+ GA V+ DG T L ++ + G +EV +L + G +
Sbjct: 105 TPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWL 162
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 66/123 (53%)
Query: 285 KTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFM 344
K L++ AD NA +G TPLH A + +VV+LL+ GA + A G TPLH A+
Sbjct: 21 KDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAEN 80
Query: 345 GCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPL 404
G + L+ GA + G TPLH AA ++V++L+ GA V+ + +TPL
Sbjct: 81 GHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPL 140
Query: 405 HVA 407
+A
Sbjct: 141 DLA 143
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 26/167 (15%)
Query: 317 VELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAAR 376
V+ L++ GA + A+ G TPLH A+ G + L+ GA + G TPLH AA
Sbjct: 20 VKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAE 79
Query: 377 ANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARA 436
++V++L+ GA V+A+ + G TPLH AA
Sbjct: 80 NGHKEVVKLLISKGADVNAKDSD--------------------------GRTPLHHAAEN 113
Query: 437 NQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGA 483
++V++L+ GA V+ + +TPL +A GN ++ LL + G
Sbjct: 114 GHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 109 bits (272), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 82/134 (61%)
Query: 560 ILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYD 619
IL +GA + A G+TPLHLAA +G ++I ++LL+ A V++ G TPLH+A+H+
Sbjct: 32 ILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFG 91
Query: 620 HQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLH 679
H + +LL GA +A NG TPLH+AA + ++I LL+Y A NA+ K G T
Sbjct: 92 HLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFD 151
Query: 680 LSAQEGHTDMSSLL 693
+S G+ D++ +L
Sbjct: 152 ISINNGNEDLAEIL 165
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 92/166 (55%), Gaps = 17/166 (10%)
Query: 499 SAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVA 558
+A+ G+D+ IL +GA + A G+TPLHLAA +G ++I ++LL+
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLK------------ 68
Query: 559 SILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHY 618
+GA + A G TPLHLAA +G ++I ++LL+ A V+++ NG+TPLH+A++
Sbjct: 69 -----NGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANR 123
Query: 619 DHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYN 664
H + +LL GA +A K G T I+ D+A L + N
Sbjct: 124 GHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEILQKLN 169
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 89/171 (52%), Gaps = 26/171 (15%)
Query: 374 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLA 433
AARA + D VRIL+ NGA V+A V G TPLHLA
Sbjct: 21 AARAGRDDEVRILMANGADVNA--------------------------ADVVGWTPLHLA 54
Query: 434 ARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGY 493
A +IV +LL+NGA V+A TPLH+A+ G+ +I +LL++GA V+A +G
Sbjct: 55 AYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGI 114
Query: 494 TALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
T LH++A G E+ +L + GA + A K G T ++ G +A++L
Sbjct: 115 TPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEIL 165
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 79/124 (63%)
Query: 433 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDG 492
AARA + D VRIL+ NGA V+A TPLH+A+ G+ +I +LL++GA V+A G
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLG 80
Query: 493 YTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVD 552
T LH++A G E+ +L ++GA + A G TPLHLAA G ++I ++LL+ A V+
Sbjct: 81 STPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVN 140
Query: 553 SQGK 556
+Q K
Sbjct: 141 AQDK 144
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 81/139 (58%), Gaps = 1/139 (0%)
Query: 681 SAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAG 740
+A+ G D +L+ +GA V+ G TPLHL A + + + + NGA+++ G
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLG 80
Query: 741 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 800
TPLH+A+HFG L +V L++NGA+VNA + G TPLH A+ +G + I+++LL GA N
Sbjct: 81 STPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVN 140
Query: 801 ATTNLFCCA-TILVKNGAE 818
A A I + NG E
Sbjct: 141 AQDKFGKTAFDISINNGNE 159
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 85/171 (49%), Gaps = 26/171 (15%)
Query: 308 ACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRG 367
A + R V +L+ GA + A G TPLH+A++ G + I LL+ GA + G
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLG 80
Query: 368 ETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGE 427
TPLHLAA +IV +LL+NGA D A++D G
Sbjct: 81 STPLHLAAHFGHLEIVEVLLKNGA--DVNAKDDN------------------------GI 114
Query: 428 TPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLL 478
TPLHLAA +IV +LL+ GA V+A+ + +T ++ GN D+A +L
Sbjct: 115 TPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEIL 165
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 82/141 (58%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
G+++ +IL+ NGA +N + G+TPL++AA H +V LL G + TPL
Sbjct: 25 GRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPL 84
Query: 133 HVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTK 192
H+A +G + +VE+L+ GA++ AK +G+TPLH AA GH ++++L++ GA + ++ K
Sbjct: 85 HLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDK 144
Query: 193 NGLAPLHMASQGDHEAATRVL 213
G ++ +E +L
Sbjct: 145 FGKTAFDISINNGNEDLAEIL 165
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 83/148 (56%)
Query: 99 LYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKT 158
L AA+ D VR L++ G + A TPLH+A WG + +VE+L+ GA++ A
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYD 77
Query: 159 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGA 218
G TPLH AA GH ++++L++ GA + +K NG+ PLH+A+ H VL+ +GA
Sbjct: 78 TLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGA 137
Query: 219 GVDEITVDYLTALHVASHCGHVRVAKTL 246
V+ TA ++ + G+ +A+ L
Sbjct: 138 DVNAQDKFGKTAFDISINNGNEDLAEIL 165
Score = 90.1 bits (222), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 80/144 (55%)
Query: 582 AAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNG 641
AA+ GR ++L+ A V++ G TPLH+A+++ H + +LL GA +A G
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLG 80
Query: 642 YTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVS 701
TPLH+AA ++I LL+ A NA+ G TPLHL+A GH ++ +L+++GA V+
Sbjct: 81 STPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVN 140
Query: 702 HQAKNGLTPLHLCAQEDKVNVATI 725
Q K G T + ++A I
Sbjct: 141 AQDKFGKTAFDISINNGNEDLAEI 164
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 75/137 (54%)
Query: 648 AAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNG 707
AA+ + D L+ A NA G+TPLHL+A GH ++ +L+++GA V+ G
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLG 80
Query: 708 LTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVN 767
TPLHL A + + + + NGA+++ G TPLH+A++ G L +V L++ GA+VN
Sbjct: 81 STPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVN 140
Query: 768 ATTNLGYTPLHQASQQG 784
A G T + G
Sbjct: 141 AQDKFGKTAFDISINNG 157
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 71/123 (57%)
Query: 285 KTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFM 344
+ L+ AD NA + G+TPLH+A ++VE+LLK GA + A G TPLH+A+
Sbjct: 31 RILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHF 90
Query: 345 GCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPL 404
G + I LL+ GA + G TPLHLAA +IV +LL+ GA V+A+ + +T
Sbjct: 91 GHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Query: 405 HVA 407
++
Sbjct: 151 DIS 153
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 75/134 (55%)
Query: 626 LLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEG 685
+L+ GA +A G+TPLH+AA ++I LL+ A NA G TPLHL+A G
Sbjct: 32 ILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFG 91
Query: 686 HTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLH 745
H ++ +L+++GA V+ + NG+TPLHL A + + + + GA+++ K G T
Sbjct: 92 HLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFD 151
Query: 746 IASHFGQLNMVRYL 759
I+ + G ++ L
Sbjct: 152 ISINNGNEDLAEIL 165
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 79/155 (50%), Gaps = 8/155 (5%)
Query: 168 AARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDY 227
AAR+G D+ + IL+ GA + + G PLH+A+ H VL+ +GA V+
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLG 80
Query: 228 LTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTL 287
T LH+A+H GH+ + + LL AD NA+ NG TPLH+A + H+ + + L
Sbjct: 81 STPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANR--------GHLEIVEVL 132
Query: 288 LDRKADPNARALNGFTPLHIACKKNRYKVVELLLK 322
L AD NA+ G T I+ + E+L K
Sbjct: 133 LKYGADVNAQDKFGKTAFDISINNGNEDLAEILQK 167
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 79/153 (51%), Gaps = 8/153 (5%)
Query: 234 ASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKAD 293
A+ G + L+ AD NA + G+TPLH+A ++ H+ + + LL AD
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLA--------AYWGHLEIVEVLLKNGAD 72
Query: 294 PNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFL 353
NA G TPLH+A ++VE+LLK GA + A ++G+TPLH+A+ G + I L
Sbjct: 73 VNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVL 132
Query: 354 LQAGAAPDTATVRGETPLHLAARANQTDIVRIL 386
L+ GA + G+T ++ D+ IL
Sbjct: 133 LKYGADVNAQDKFGKTAFDISINNGNEDLAEIL 165
Score = 76.3 bits (186), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 75/134 (55%)
Query: 135 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNG 194
A + G+ V +L++ GA++ A G TPLH AA GH ++++L++ GA + + G
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLG 80
Query: 195 LAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPN 254
PLH+A+ H VL+ +GA V+ + +T LH+A++ GH+ + + LL AD N
Sbjct: 81 STPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVN 140
Query: 255 ARALNGFTPLHIAC 268
A+ G T I+
Sbjct: 141 AQDKFGKTAFDISI 154
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 109 bits (272), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 83/124 (66%)
Query: 433 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDG 492
AARA Q D VRIL+ NGA V+A +TPLH+A+ G+ +I +LL+HGA V+A K G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMG 80
Query: 493 YTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVD 552
T LH++A G E+ +L ++GA + AT GFTPLHLAA G ++I ++LL+ A V+
Sbjct: 81 DTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVN 140
Query: 553 SQGK 556
+Q K
Sbjct: 141 AQDK 144
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 80/141 (56%)
Query: 553 SQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPL 612
Q IL +GA + A G TPLHLAA G ++I ++LL+ A V++ K G TPL
Sbjct: 25 GQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPL 84
Query: 613 HVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESK 672
H+A+ Y H + +LL GA +A G+TPLH+AA ++I LL+Y A NA+ K
Sbjct: 85 HLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDK 144
Query: 673 AGFTPLHLSAQEGHTDMSSLL 693
G T +S G+ D++ +L
Sbjct: 145 FGKTAFDISIDNGNEDLAEIL 165
Score = 99.4 bits (246), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 93/171 (54%), Gaps = 26/171 (15%)
Query: 374 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLA 433
AARA Q D VRIL+ NGA V+A ED + G+TPLHLA
Sbjct: 21 AARAGQDDEVRILMANGADVNA---EDDS-----------------------GKTPLHLA 54
Query: 434 ARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGY 493
A +IV +LL++GA V+A + TPLH+A+ G+ +I +LL++GA V+A G+
Sbjct: 55 AIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGF 114
Query: 494 TALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
T LH++A G E+ +L + GA + A K G T ++ G +A++L
Sbjct: 115 TPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 82/145 (56%)
Query: 648 AAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNG 707
AA+ Q D L+ A NAE +G TPLHL+A +GH ++ +L++HGA V+ K G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMG 80
Query: 708 LTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVN 767
TPLHL A + + + + NGA+++ GFTPLH+A+ G L +V L++ GA+VN
Sbjct: 81 DTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVN 140
Query: 768 ATTNLGYTPLHQASQQGRVLIIDLL 792
A G T + G + ++L
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 84/139 (60%), Gaps = 1/139 (0%)
Query: 681 SAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAG 740
+A+ G D +L+ +GA V+ + +G TPLHL A + + + + + +GA+++ K G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMG 80
Query: 741 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 800
TPLH+A+ +G L +V L++NGA+VNAT G+TPLH A+ G + I+++LL GA N
Sbjct: 81 DTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVN 140
Query: 801 ATTNLFCCA-TILVKNGAE 818
A A I + NG E
Sbjct: 141 AQDKFGKTAFDISIDNGNE 159
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 86/166 (51%), Gaps = 17/166 (10%)
Query: 499 SAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVA 558
+A+ GQD+ IL +GA + A G TPLHLAA G ++I ++LL+
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLK------------ 68
Query: 559 SILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHY 618
GA + A K G TPLHLAA YG ++I ++LL+ A V++ G TPLH+A+
Sbjct: 69 -----HGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADA 123
Query: 619 DHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYN 664
H + +LL GA +A K G T I+ D+A L + N
Sbjct: 124 GHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 95.9 bits (237), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 88/171 (51%), Gaps = 26/171 (15%)
Query: 308 ACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRG 367
A + + V +L+ GA + A +SG TPLH+A+ G + I LL+ GA + A G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMG 80
Query: 368 ETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGE 427
+TPLHLAA +IV +LL+NGA V+A T G
Sbjct: 81 DTPLHLAALYGHLEIVEVLLKNGADVNA--------------------------TDTYGF 114
Query: 428 TPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLL 478
TPLHLAA A +IV +LL+ GA V+A+ + +T ++ GN D+A +L
Sbjct: 115 TPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 92.4 bits (228), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 74/123 (60%)
Query: 285 KTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFM 344
+ L+ AD NA +G TPLH+A K ++VE+LLK+GA + A + G TPLH+A+
Sbjct: 31 RILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALY 90
Query: 345 GCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPL 404
G + I LL+ GA + G TPLHLAA A +IV +LL+ GA V+A+ + +T
Sbjct: 91 GHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Query: 405 HVA 407
++
Sbjct: 151 DIS 153
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 83/141 (58%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
GQ++ +IL+ NGA +N + +G TPL++AA + H +V LL G + A + TPL
Sbjct: 25 GQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPL 84
Query: 133 HVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTK 192
H+A +G + +VE+L+ GA++ A G TPLH AA +GH ++++L++ GA + ++ K
Sbjct: 85 HLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDK 144
Query: 193 NGLAPLHMASQGDHEAATRVL 213
G ++ +E +L
Sbjct: 145 FGKTAFDISIDNGNEDLAEIL 165
Score = 89.4 bits (220), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 81/144 (56%)
Query: 582 AAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNG 641
AA+ G+ ++L+ A V+++ +G TPLH+A+ H + +LL GA +A K G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMG 80
Query: 642 YTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVS 701
TPLH+AA ++I LL+ A NA GFTPLHL+A GH ++ +L+++GA V+
Sbjct: 81 DTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVN 140
Query: 702 HQAKNGLTPLHLCAQEDKVNVATI 725
Q K G T + ++A I
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEI 164
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 74/134 (55%)
Query: 626 LLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEG 685
+L+ GA +A +G TPLH+AA K ++I LL++ A NA K G TPLHL+A G
Sbjct: 32 ILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYG 91
Query: 686 HTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLH 745
H ++ +L+++GA V+ G TPLHL A + + + + GA+++ K G T
Sbjct: 92 HLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFD 151
Query: 746 IASHFGQLNMVRYL 759
I+ G ++ L
Sbjct: 152 ISIDNGNEDLAEIL 165
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 78/155 (50%), Gaps = 8/155 (5%)
Query: 168 AARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDY 227
AAR+G D+ + IL+ GA + ++ +G PLH+A+ H VL+ HGA V+
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMG 80
Query: 228 LTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTL 287
T LH+A+ GH+ + + LL AD NA GFTPLH+A H+ + + L
Sbjct: 81 DTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAAD--------AGHLEIVEVL 132
Query: 288 LDRKADPNARALNGFTPLHIACKKNRYKVVELLLK 322
L AD NA+ G T I+ + E+L K
Sbjct: 133 LKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 76/155 (49%), Gaps = 8/155 (5%)
Query: 234 ASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKAD 293
A+ G + L+ AD NA +G TPLH+A K H+ + + LL AD
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKG--------HLEIVEVLLKHGAD 72
Query: 294 PNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFL 353
NA G TPLH+A ++VE+LLK GA + AT G TPLH+A+ G + I L
Sbjct: 73 VNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVL 132
Query: 354 LQAGAAPDTATVRGETPLHLAARANQTDIVRILLR 388
L+ GA + G+T ++ D+ IL +
Sbjct: 133 LKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 79/148 (53%)
Query: 99 LYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKT 158
L AA+ D VR L++ G + + TPLH+A G + +VE+L+ GA++ A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAAD 77
Query: 159 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGA 218
+ G TPLH AA GH ++++L++ GA + + G PLH+A+ H VL+ +GA
Sbjct: 78 KMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGA 137
Query: 219 GVDEITVDYLTALHVASHCGHVRVAKTL 246
V+ TA ++ G+ +A+ L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 74/134 (55%)
Query: 135 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNG 194
A + G+ V +L++ GA++ A+ G TPLH AA GH ++++L++ GA + + K G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMG 80
Query: 195 LAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPN 254
PLH+A+ H VL+ +GA V+ T LH+A+ GH+ + + LL AD N
Sbjct: 81 DTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVN 140
Query: 255 ARALNGFTPLHIAC 268
A+ G T I+
Sbjct: 141 AQDKFGKTAFDISI 154
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 111/228 (48%), Gaps = 9/228 (3%)
Query: 192 KNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKA 251
+N +PLH A++ H +L+ GA +D + D T L A+ H+ K L+ A
Sbjct: 9 QNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGA 68
Query: 252 DPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDR-KADPNARALNGFTPLHIACK 310
+ + G T LH+A KK Y+ V + LL + D N + G+TP+ A +
Sbjct: 69 LVDPKDAEGSTCLHLAAKKGHYE--------VVQYLLSNGQMDVNCQDDGGWTPMIWATE 120
Query: 311 KNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETP 370
+V+LLL G+ I LH A+F GC++IA LL A + G++P
Sbjct: 121 YKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSP 180
Query: 371 LHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQ 418
LH+AAR N+ D V + L + V + +E +TPL AS + SA Q
Sbjct: 181 LHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQ 228
Score = 103 bits (257), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 113/223 (50%), Gaps = 16/223 (7%)
Query: 460 QTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASIT 519
++PLH A+ G+ DI +L+Q GA++D ++D T L +A+ E L ++GA +
Sbjct: 12 RSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD 71
Query: 520 ATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPL 579
+G T LHLAAK G ++ Q LL S G++ + G+TP+
Sbjct: 72 PKDAEGSTCLHLAAKKGHYEVVQYLL-------SNGQM---------DVNCQDDGGWTPM 115
Query: 580 HLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAK 639
A +Y + + ++LL K + ++ + LH A+ ++A +LL HAV
Sbjct: 116 IWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNI 175
Query: 640 NGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSA 682
+G +PLHIAA++N+ D L ++ ++K G TPL ++
Sbjct: 176 HGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCAS 218
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 111/228 (48%), Gaps = 18/228 (7%)
Query: 428 TPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDA 487
+PLH AA A DI +L++ GA++D + + +TPL A+ + + L++ GA VD
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72
Query: 488 PTKDGYTALHISAKEGQDEVASILTESGA-SITATTKKGFTPLHLAAKYGRMKIAQMLLQ 546
+G T LH++AK+G EV L +G + G+TP+ A +Y + + ++LL
Sbjct: 73 KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLS 132
Query: 547 KDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGK 606
K G+ I + LH AA G + IA++LL + +
Sbjct: 133 K-----------------GSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNI 175
Query: 607 NGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQM 654
+G +PLH+A+ + + +L L R + K G TPL A+ +Q+
Sbjct: 176 HGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQV 223
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 108/234 (46%), Gaps = 25/234 (10%)
Query: 300 NGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAA 359
N +PLH A + + +L++ GA+I +E TPL A+ + +L++AGA
Sbjct: 10 NKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGAL 69
Query: 360 PDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQS 419
D G T LHLAA+ ++V+ LL NG +D ++D
Sbjct: 70 VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNG-QMDVNCQDD------------------- 109
Query: 420 ALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLL 479
G TP+ A D+V++LL G+ ++ R E+ LH A+ G DIA +LL
Sbjct: 110 -----GGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILL 164
Query: 480 QHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAA 533
+ A G + LHI+A+E + + + + +T K+G TPL A+
Sbjct: 165 AAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCAS 218
Score = 93.2 bits (230), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 105/215 (48%), Gaps = 9/215 (4%)
Query: 130 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 189
+PLH A + G V + +L+ GANI+ + D TPL AA + H + LI+ GA +
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72
Query: 190 KTKNGLAPLHMASQGDHEAATRVLIYHG-AGVDEITVDYLTALHVASHCGHVRVAKTLLD 248
K G LH+A++ H + L+ +G V+ T + A+ HV + K LL
Sbjct: 73 KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLS 132
Query: 249 RKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIA 308
+ +D N R LH A S C V +A+ LL K D +A ++G +PLHIA
Sbjct: 133 KGSDINIRDNEENICLHWA------AFSGC--VDIAEILLAAKCDLHAVNIHGDSPLHIA 184
Query: 309 CKKNRYKVVELLLKYGASIAATTESGLTPLHVASF 343
++NRY V L L + + + G TPL AS
Sbjct: 185 ARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASL 219
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 103/216 (47%), Gaps = 9/216 (4%)
Query: 94 NGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGAN 153
N +PL+ AA+ H + L+ G N +E TPL A + + V+ LI GA
Sbjct: 10 NKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGAL 69
Query: 154 IEAKTRDGLTPLHCAARSGHDNVIDILIEKGAA-LYSKTKNGLAPLHMASQGDHEAATRV 212
++ K +G T LH AA+ GH V+ L+ G + + G P+ A++ H ++
Sbjct: 70 VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKL 129
Query: 213 LIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNR 272
L+ G+ ++ + LH A+ G V +A+ LL K D +A ++G +PLHIA ++NR
Sbjct: 130 LLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENR 189
Query: 273 YKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIA 308
Y L R +D + G TPL A
Sbjct: 190 YD--------CVVLFLSRDSDVTLKNKEGETPLQCA 217
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 99/212 (46%), Gaps = 1/212 (0%)
Query: 577 TPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHA 636
+PLH AA+ G + I ML+Q A +D+ ++ TPL A+ +H L+ GA
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72
Query: 637 VAKNGYTPLHIAAKKNQMDIATTLLEY-NAKPNAESKAGFTPLHLSAQEGHTDMSSLLIE 695
G T LH+AAKK ++ LL N + G+TP+ + + H D+ LL+
Sbjct: 73 KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLS 132
Query: 696 HGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNM 755
G+ ++ + LH A V++A I + ++ V G +PLHIA+ + +
Sbjct: 133 KGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDC 192
Query: 756 VRYLVENGANVNATTNLGYTPLHQASQQGRVL 787
V + ++V G TPL AS +V
Sbjct: 193 VVLFLSRDSDVTLKNKEGETPLQCASLNSQVW 224
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 72/130 (55%), Gaps = 1/130 (0%)
Query: 676 TPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDP 735
+PLH +A+ GH D+ +L++ GA + +++ TPL A+ + + + GA +DP
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72
Query: 736 VTKAGFTPLHIASHFGQLNMVRYLVENG-ANVNATTNLGYTPLHQASQQGRVLIIDLLLG 794
G T LH+A+ G +V+YL+ NG +VN + G+TP+ A++ V ++ LLL
Sbjct: 73 KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLS 132
Query: 795 AGAQPNATTN 804
G+ N N
Sbjct: 133 KGSDINIRDN 142
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 97/189 (51%), Gaps = 1/189 (0%)
Query: 606 KNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNA 665
+N +PLH A+ H ++ +L+ GA+ +++ TPL AA+ N ++ L++ A
Sbjct: 9 QNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGA 68
Query: 666 KPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGAT-VSHQAKNGLTPLHLCAQEDKVNVAT 724
+ + G T LHL+A++GH ++ L+ +G V+ Q G TP+ + V++
Sbjct: 69 LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVK 128
Query: 725 ITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQG 784
+ + G++I+ LH A+ G +++ L+ +++A G +PLH A+++
Sbjct: 129 LLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAAREN 188
Query: 785 RVLIIDLLL 793
R + L L
Sbjct: 189 RYDCVVLFL 197
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 1/131 (0%)
Query: 73 GQEEVAKILVDNGAT-INVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITP 131
G EV + L+ NG +N Q G+TP+ A + H +V+ LLSKG + +
Sbjct: 88 GHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENIC 147
Query: 132 LHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKT 191
LH A G V + E+L++ ++ A G +PLH AAR + + + + + + + K
Sbjct: 148 LHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKN 207
Query: 192 KNGLAPLHMAS 202
K G PL AS
Sbjct: 208 KEGETPLQCAS 218
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 49/92 (53%)
Query: 705 KNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGA 764
+N +PLH A+ V++ + + GA ID ++ TPL A+ L V+YL++ GA
Sbjct: 9 QNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGA 68
Query: 765 NVNATTNLGYTPLHQASQQGRVLIIDLLLGAG 796
V+ G T LH A+++G ++ LL G
Sbjct: 69 LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNG 100
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 52 EVSLSNTKLEVSLSNTKFEATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVV 111
++++ + + + L F +G ++A+IL+ ++ +++G +PL++AA+EN V
Sbjct: 136 DINIRDNEENICLHWAAF--SGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCV 193
Query: 112 RYLLSKGGNQTLATEHNITPLHVA 135
LS+ + TL + TPL A
Sbjct: 194 VLFLSRDSDVTLKNKEGETPLQCA 217
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 80/126 (63%)
Query: 433 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDG 492
AARA Q D VRIL+ NGA V+A TPLH+A+ G+ +I +LL++GA V+A G
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLG 80
Query: 493 YTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVD 552
T LH++A G EV +L ++GA + A GFTPLHLAA G ++I ++LL+ A V+
Sbjct: 81 VTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVN 140
Query: 553 SQGKVA 558
+Q K
Sbjct: 141 AQDKFG 146
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 83/141 (58%)
Query: 553 SQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPL 612
Q IL +GA + A+ G+TPLHLAA +G ++I ++LL+ A V++ GVTPL
Sbjct: 25 GQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPL 84
Query: 613 HVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESK 672
H+A+ H V +LL GA +A NG+TPLH+AA ++I LL++ A NA+ K
Sbjct: 85 HLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDK 144
Query: 673 AGFTPLHLSAQEGHTDMSSLL 693
G T +S G+ D++ +L
Sbjct: 145 FGKTAFDISIDNGNEDLAEIL 165
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 90/166 (54%), Gaps = 17/166 (10%)
Query: 499 SAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVA 558
+A+ GQD+ IL +GA + A+ G+TPLHLAA +G ++I ++LL+
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLK------------ 68
Query: 559 SILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHY 618
+GA + A G TPLHLAA G +++ ++LL+ A V++ NG TPLH+A++
Sbjct: 69 -----NGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANI 123
Query: 619 DHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYN 664
H + +LL GA +A K G T I+ D+A L + N
Sbjct: 124 GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 91/171 (53%), Gaps = 26/171 (15%)
Query: 374 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLA 433
AARA Q D VRIL+ NGA V+A HV G TPLHLA
Sbjct: 21 AARAGQDDEVRILMANGADVNASD-------HV-------------------GWTPLHLA 54
Query: 434 ARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGY 493
A +IV +LL+NGA V+A TPLH+A+ G+ ++ +LL++GA V+A +G+
Sbjct: 55 AYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGF 114
Query: 494 TALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
T LH++A G E+ +L + GA + A K G T ++ G +A++L
Sbjct: 115 TPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 82/145 (56%)
Query: 648 AAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNG 707
AA+ Q D L+ A NA G+TPLHL+A GH ++ +L+++GA V+ G
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLG 80
Query: 708 LTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVN 767
+TPLHL A + V + + NGA+++ GFTPLH+A++ G L +V L+++GA+VN
Sbjct: 81 VTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVN 140
Query: 768 ATTNLGYTPLHQASQQGRVLIIDLL 792
A G T + G + ++L
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 81/144 (56%)
Query: 582 AAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNG 641
AA+ G+ ++L+ A V++ G TPLH+A+++ H + +LL GA +A G
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLG 80
Query: 642 YTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVS 701
TPLH+AA + +++ LL+ A NA GFTPLHL+A GH ++ +L++HGA V+
Sbjct: 81 VTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVN 140
Query: 702 HQAKNGLTPLHLCAQEDKVNVATI 725
Q K G T + ++A I
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEI 164
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 79/141 (56%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
GQ++ +IL+ NGA +N G+TPL++AA H +V LL G + +TPL
Sbjct: 25 GQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPL 84
Query: 133 HVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTK 192
H+A G + +VE+L+ GA++ A +G TPLH AA GH ++++L++ GA + ++ K
Sbjct: 85 HLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDK 144
Query: 193 NGLAPLHMASQGDHEAATRVL 213
G ++ +E +L
Sbjct: 145 FGKTAFDISIDNGNEDLAEIL 165
Score = 90.1 bits (222), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 85/171 (49%), Gaps = 26/171 (15%)
Query: 308 ACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRG 367
A + + V +L+ GA + A+ G TPLH+A++ G + I LL+ GA + G
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLG 80
Query: 368 ETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGE 427
TPLHLAA ++V +LL+NGA V+A G
Sbjct: 81 VTPLHLAADRGHLEVVEVLLKNGADVNANDH--------------------------NGF 114
Query: 428 TPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLL 478
TPLHLAA +IV +LL++GA V+A+ + +T ++ GN D+A +L
Sbjct: 115 TPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 89.4 bits (220), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 79/139 (56%), Gaps = 1/139 (0%)
Query: 681 SAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAG 740
+A+ G D +L+ +GA V+ G TPLHL A + + + + NGA+++ G
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLG 80
Query: 741 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 800
TPLH+A+ G L +V L++NGA+VNA + G+TPLH A+ G + I+++LL GA N
Sbjct: 81 VTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVN 140
Query: 801 ATTNLFCCA-TILVKNGAE 818
A A I + NG E
Sbjct: 141 AQDKFGKTAFDISIDNGNE 159
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 81/148 (54%)
Query: 99 LYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKT 158
L AA+ D VR L++ G + + TPLH+A +G + +VE+L+ GA++ A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADD 77
Query: 159 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGA 218
G+TPLH AA GH V+++L++ GA + + NG PLH+A+ H VL+ HGA
Sbjct: 78 SLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGA 137
Query: 219 GVDEITVDYLTALHVASHCGHVRVAKTL 246
V+ TA ++ G+ +A+ L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 85.9 bits (211), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 81/153 (52%), Gaps = 8/153 (5%)
Query: 201 ASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNG 260
A++ + R+L+ +GA V+ T LH+A++ GH+ + + LL AD NA G
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLG 80
Query: 261 FTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELL 320
TPLH+A + H+ V + LL AD NA NGFTPLH+A ++VE+L
Sbjct: 81 VTPLHLAADR--------GHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVL 132
Query: 321 LKYGASIAATTESGLTPLHVASFMGCMNIAIFL 353
LK+GA + A + G T ++ G ++A L
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 74/134 (55%)
Query: 626 LLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEG 685
+L+ GA +A G+TPLH+AA ++I LL+ A NA+ G TPLHL+A G
Sbjct: 32 ILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRG 91
Query: 686 HTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLH 745
H ++ +L+++GA V+ NG TPLHL A + + + + +GA+++ K G T
Sbjct: 92 HLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFD 151
Query: 746 IASHFGQLNMVRYL 759
I+ G ++ L
Sbjct: 152 ISIDNGNEDLAEIL 165
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 72/123 (58%)
Query: 285 KTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFM 344
+ L+ AD NA G+TPLH+A ++VE+LLK GA + A G+TPLH+A+
Sbjct: 31 RILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADR 90
Query: 345 GCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPL 404
G + + LL+ GA + G TPLHLAA +IV +LL++GA V+A+ + +T
Sbjct: 91 GHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAF 150
Query: 405 HVA 407
++
Sbjct: 151 DIS 153
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 78/153 (50%), Gaps = 8/153 (5%)
Query: 234 ASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKAD 293
A+ G + L+ AD NA G+TPLH+A ++ H+ + + LL AD
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLA--------AYFGHLEIVEVLLKNGAD 72
Query: 294 PNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFL 353
NA G TPLH+A + +VVE+LLK GA + A +G TPLH+A+ +G + I L
Sbjct: 73 VNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVL 132
Query: 354 LQAGAAPDTATVRGETPLHLAARANQTDIVRIL 386
L+ GA + G+T ++ D+ IL
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 80/155 (51%), Gaps = 8/155 (5%)
Query: 168 AARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDY 227
AAR+G D+ + IL+ GA + + G PLH+A+ H VL+ +GA V+
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLG 80
Query: 228 LTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTL 287
+T LH+A+ GH+ V + LL AD NA NGFTPLH+A ++ H+ + + L
Sbjct: 81 VTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLA--------ANIGHLEIVEVL 132
Query: 288 LDRKADPNARALNGFTPLHIACKKNRYKVVELLLK 322
L AD NA+ G T I+ + E+L K
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 75/134 (55%)
Query: 135 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNG 194
A + G+ V +L++ GA++ A G TPLH AA GH ++++L++ GA + + G
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLG 80
Query: 195 LAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPN 254
+ PLH+A+ H VL+ +GA V+ + T LH+A++ GH+ + + LL AD N
Sbjct: 81 VTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVN 140
Query: 255 ARALNGFTPLHIAC 268
A+ G T I+
Sbjct: 141 AQDKFGKTAFDISI 154
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 107 bits (266), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 82/134 (61%)
Query: 560 ILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYD 619
IL +GA + AT G TPLHLAA G+++I ++LL+ A V++ G+TPLH+A++
Sbjct: 24 ILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDG 83
Query: 620 HQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLH 679
H + +LL GA +A + G+TPLH+AA Q++I LL++ A NA+ G T
Sbjct: 84 HLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFD 143
Query: 680 LSAQEGHTDMSSLL 693
+S +G D++ +L
Sbjct: 144 ISINQGQEDLAEIL 157
Score = 102 bits (255), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 64/171 (37%), Positives = 91/171 (53%), Gaps = 26/171 (15%)
Query: 374 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLA 433
AA A Q D VRIL+ NGA V+A T G TPLHLA
Sbjct: 13 AAAAGQDDEVRILMANGADVNA--------------------------TDDNGLTPLHLA 46
Query: 434 ARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGY 493
A Q +IV +LL+NGA V+A TPLH+A+ G+ +I +LL+HGA V+A + G+
Sbjct: 47 AANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGW 106
Query: 494 TALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
T LH++A GQ E+ +L + GA + A G T ++ G+ +A++L
Sbjct: 107 TPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDLAEIL 157
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 89/162 (54%), Gaps = 17/162 (10%)
Query: 433 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDG 492
AA A Q D VRIL+ NGA V+A TPLH+A+ G +I +LL++GA V+A G
Sbjct: 13 AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAG 72
Query: 493 YTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVD 552
T LH++A +G E+ +L + GA + A + G+TPLHLAA G+++I ++LL+
Sbjct: 73 ITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKH----- 127
Query: 553 SQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 594
GA + A G T ++ G+ +A++L
Sbjct: 128 ------------GADVNAQDALGLTAFDISINQGQEDLAEIL 157
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 83/139 (59%), Gaps = 1/139 (0%)
Query: 681 SAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAG 740
+A G D +L+ +GA V+ NGLTPLHL A ++ + + + NGA+++ AG
Sbjct: 13 AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAG 72
Query: 741 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 800
TPLH+A++ G L +V L+++GA+VNA G+TPLH A+ G++ I+++LL GA N
Sbjct: 73 ITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVN 132
Query: 801 ATTNLFCCA-TILVKNGAE 818
A L A I + G E
Sbjct: 133 AQDALGLTAFDISINQGQE 151
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 78/134 (58%)
Query: 626 LLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEG 685
+L+ GA +A NG TPLH+AA Q++I LL+ A NA AG TPLHL+A +G
Sbjct: 24 ILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDG 83
Query: 686 HTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLH 745
H ++ +L++HGA V+ + G TPLHL A ++ + + + +GA+++ G T
Sbjct: 84 HLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFD 143
Query: 746 IASHFGQLNMVRYL 759
I+ + GQ ++ L
Sbjct: 144 ISINQGQEDLAEIL 157
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 81/138 (58%)
Query: 648 AAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNG 707
AA Q D L+ A NA G TPLHL+A G ++ +L+++GA V+ G
Sbjct: 13 AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAG 72
Query: 708 LTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVN 767
+TPLHL A + + + + + +GA+++ +AG+TPLH+A+ GQL +V L+++GA+VN
Sbjct: 73 ITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVN 132
Query: 768 ATTNLGYTPLHQASQQGR 785
A LG T + QG+
Sbjct: 133 AQDALGLTAFDISINQGQ 150
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 73/112 (65%)
Query: 285 KTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFM 344
+ L+ AD NA NG TPLH+A + ++VE+LLK GA + A+ +G+TPLH+A++
Sbjct: 23 RILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYD 82
Query: 345 GCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDAR 396
G + I LL+ GA + G TPLHLAA + Q +IV +LL++GA V+A+
Sbjct: 83 GHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQ 134
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 81/140 (57%), Gaps = 1/140 (0%)
Query: 71 ATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNIT 130
A GQ++ +IL+ NGA +N NG TPL++AA +V LL G + + IT
Sbjct: 15 AAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGIT 74
Query: 131 PLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSK 190
PLH+A G + +VE+L+ GA++ A R G TPLH AA SG ++++L++ GA + ++
Sbjct: 75 PLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQ 134
Query: 191 TKNGLAPLHMA-SQGDHEAA 209
GL ++ +QG + A
Sbjct: 135 DALGLTAFDISINQGQEDLA 154
Score = 90.5 bits (223), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 82/144 (56%)
Query: 582 AAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNG 641
AA G+ ++L+ A V++ NG+TPLH+A+ + +LL GA +A G
Sbjct: 13 AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAG 72
Query: 642 YTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVS 701
TPLH+AA ++I LL++ A NA +AG+TPLHL+A G ++ +L++HGA V+
Sbjct: 73 ITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVN 132
Query: 702 HQAKNGLTPLHLCAQEDKVNVATI 725
Q GLT + + + ++A I
Sbjct: 133 AQDALGLTAFDISINQGQEDLAEI 156
Score = 89.0 bits (219), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 85/162 (52%), Gaps = 26/162 (16%)
Query: 317 VELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAAR 376
V +L+ GA + AT ++GLTPLH+A+ G + I LL+ GA + + G TPLHLAA
Sbjct: 22 VRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAY 81
Query: 377 ANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARA 436
+IV +LL++GA V+A R G TPLHLAA +
Sbjct: 82 DGHLEIVEVLLKHGADVNAYDR--------------------------AGWTPLHLAALS 115
Query: 437 NQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLL 478
Q +IV +LL++GA V+A+ T ++ G D+A +L
Sbjct: 116 GQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDLAEIL 157
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 82/148 (55%)
Query: 99 LYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKT 158
L AA D VR L++ G + ++ +TPLH+A G++ +VE+L+ GA++ A
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASD 69
Query: 159 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGA 218
G+TPLH AA GH ++++L++ GA + + + G PLH+A+ VL+ HGA
Sbjct: 70 SAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGA 129
Query: 219 GVDEITVDYLTALHVASHCGHVRVAKTL 246
V+ LTA ++ + G +A+ L
Sbjct: 130 DVNAQDALGLTAFDISINQGQEDLAEIL 157
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 75/153 (49%), Gaps = 8/153 (5%)
Query: 234 ASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKAD 293
A+ G + L+ AD NA NG TPLH+A + + + + LL AD
Sbjct: 13 AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLE--------IVEVLLKNGAD 64
Query: 294 PNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFL 353
NA G TPLH+A ++VE+LLK+GA + A +G TPLH+A+ G + I L
Sbjct: 65 VNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVL 124
Query: 354 LQAGAAPDTATVRGETPLHLAARANQTDIVRIL 386
L+ GA + G T ++ Q D+ IL
Sbjct: 125 LKHGADVNAQDALGLTAFDISINQGQEDLAEIL 157
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 75/138 (54%)
Query: 135 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNG 194
A G+ V +L++ GA++ A +GLTPLH AA +G ++++L++ GA + + G
Sbjct: 13 AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAG 72
Query: 195 LAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPN 254
+ PLH+A+ H VL+ HGA V+ T LH+A+ G + + + LL AD N
Sbjct: 73 ITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVN 132
Query: 255 ARALNGFTPLHIACKKNR 272
A+ G T I+ + +
Sbjct: 133 AQDALGLTAFDISINQGQ 150
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 79/153 (51%), Gaps = 8/153 (5%)
Query: 168 AARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDY 227
AA +G D+ + IL+ GA + + NGL PLH+A+ VL+ +GA V+
Sbjct: 13 AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAG 72
Query: 228 LTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTL 287
+T LH+A++ GH+ + + LL AD NA G+TPLH+A + + + + L
Sbjct: 73 ITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLE--------IVEVL 124
Query: 288 LDRKADPNARALNGFTPLHIACKKNRYKVVELL 320
L AD NA+ G T I+ + + + E+L
Sbjct: 125 LKHGADVNAQDALGLTAFDISINQGQEDLAEIL 157
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 62/110 (56%)
Query: 71 ATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNIT 130
A GQ E+ ++L+ NGA +N G TPL++AA + H +V LL G + T
Sbjct: 48 ANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWT 107
Query: 131 PLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 180
PLH+A G++ +VE+L+ GA++ A+ GLT + G +++ +IL
Sbjct: 108 PLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDLAEIL 157
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 106 bits (265), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 81/126 (64%)
Query: 433 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDG 492
AARA Q D VRIL+ NGA V+A + TPLH+A+ G+ +I +LL++GA V+A G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTG 80
Query: 493 YTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVD 552
T LH++A G E+ +L + GA + A G TPLHLAAKYG ++I ++LL+ A V+
Sbjct: 81 ITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVN 140
Query: 553 SQGKVA 558
+Q K
Sbjct: 141 AQDKFG 146
Score = 105 bits (262), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 91/171 (53%), Gaps = 26/171 (15%)
Query: 374 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLA 433
AARA Q D VRIL+ NGA V+A T G TPLHLA
Sbjct: 21 AARAGQDDEVRILMANGADVNA--------------------------TDNDGYTPLHLA 54
Query: 434 ARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGY 493
A +IV +LL+NGA V+A TPLH+A+ G+ +I +LL+HGA V+A DG+
Sbjct: 55 ASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGH 114
Query: 494 TALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
T LH++AK G E+ +L + GA + A K G T ++ G +A++L
Sbjct: 115 TPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 83/141 (58%)
Query: 553 SQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPL 612
Q IL +GA + AT G+TPLHLAA G ++I ++LL+ A V++ G+TPL
Sbjct: 25 GQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPL 84
Query: 613 HVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESK 672
H+A+ H + +LL GA +A +G+TPLH+AAK ++I LL++ A NA+ K
Sbjct: 85 HLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDK 144
Query: 673 AGFTPLHLSAQEGHTDMSSLL 693
G T +S G+ D++ +L
Sbjct: 145 FGKTAFDISIDNGNEDLAEIL 165
Score = 103 bits (256), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 88/162 (54%), Gaps = 17/162 (10%)
Query: 499 SAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVA 558
+A+ GQD+ IL +GA + AT G+TPLHLAA G ++I ++LL+
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLK------------ 68
Query: 559 SILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHY 618
+GA + A+ G TPLHLAA G ++I ++LL+ A V++ +G TPLH+A+ Y
Sbjct: 69 -----NGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKY 123
Query: 619 DHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTL 660
H + +LL GA +A K G T I+ D+A L
Sbjct: 124 GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 82/141 (58%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
GQ++ +IL+ NGA +N +G+TPL++AA H +V LL G + + ITPL
Sbjct: 25 GQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPL 84
Query: 133 HVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTK 192
H+A G + +VE+L+ GA++ A DG TPLH AA+ GH ++++L++ GA + ++ K
Sbjct: 85 HLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDK 144
Query: 193 NGLAPLHMASQGDHEAATRVL 213
G ++ +E +L
Sbjct: 145 FGKTAFDISIDNGNEDLAEIL 165
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 81/145 (55%)
Query: 648 AAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNG 707
AA+ Q D L+ A NA G+TPLHL+A GH ++ +L+++GA V+ G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTG 80
Query: 708 LTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVN 767
+TPLHL A + + + + +GA+++ G TPLH+A+ +G L +V L+++GA+VN
Sbjct: 81 ITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVN 140
Query: 768 ATTNLGYTPLHQASQQGRVLIIDLL 792
A G T + G + ++L
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 93.2 bits (230), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 76/123 (61%)
Query: 285 KTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFM 344
+ L+ AD NA +G+TPLH+A ++VE+LLK GA + A+ +G+TPLH+A+
Sbjct: 31 RILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAAT 90
Query: 345 GCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPL 404
G + I LL+ GA + G TPLHLAA+ +IV +LL++GA V+A+ + +T
Sbjct: 91 GHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAF 150
Query: 405 HVA 407
++
Sbjct: 151 DIS 153
Score = 92.4 bits (228), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 81/139 (58%), Gaps = 1/139 (0%)
Query: 681 SAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAG 740
+A+ G D +L+ +GA V+ +G TPLHL A + + + + NGA+++ G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTG 80
Query: 741 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 800
TPLH+A+ G L +V L+++GA+VNA N G+TPLH A++ G + I+++LL GA N
Sbjct: 81 ITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVN 140
Query: 801 ATTNLFCCA-TILVKNGAE 818
A A I + NG E
Sbjct: 141 AQDKFGKTAFDISIDNGNE 159
Score = 89.4 bits (220), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 75/134 (55%)
Query: 626 LLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEG 685
+L+ GA +A +GYTPLH+AA ++I LL+ A NA G TPLHL+A G
Sbjct: 32 ILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATG 91
Query: 686 HTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLH 745
H ++ +L++HGA V+ +G TPLHL A+ + + + + +GA+++ K G T
Sbjct: 92 HLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFD 151
Query: 746 IASHFGQLNMVRYL 759
I+ G ++ L
Sbjct: 152 ISIDNGNEDLAEIL 165
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 80/144 (55%)
Query: 582 AAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNG 641
AA+ G+ ++L+ A V++ +G TPLH+A+ H + +LL GA +A G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTG 80
Query: 642 YTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVS 701
TPLH+AA ++I LL++ A NA G TPLHL+A+ GH ++ +L++HGA V+
Sbjct: 81 ITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVN 140
Query: 702 HQAKNGLTPLHLCAQEDKVNVATI 725
Q K G T + ++A I
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEI 164
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 87/171 (50%), Gaps = 26/171 (15%)
Query: 308 ACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRG 367
A + + V +L+ GA + AT G TPLH+A+ G + I LL+ GA + + + G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTG 80
Query: 368 ETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGE 427
TPLHLAA +IV +LL++GA V+A + TP
Sbjct: 81 ITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTP------------------------ 116
Query: 428 TPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLL 478
LHLAA+ +IV +LL++GA V+A+ + +T ++ GN D+A +L
Sbjct: 117 --LHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 76/134 (56%)
Query: 135 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNG 194
A + G+ V +L++ GA++ A DG TPLH AA +GH ++++L++ GA + + G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTG 80
Query: 195 LAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPN 254
+ PLH+A+ H VL+ HGA V+ D T LH+A+ GH+ + + LL AD N
Sbjct: 81 ITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVN 140
Query: 255 ARALNGFTPLHIAC 268
A+ G T I+
Sbjct: 141 AQDKFGKTAFDISI 154
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 8/153 (5%)
Query: 234 ASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKAD 293
A+ G + L+ AD NA +G+TPLH+A H+ + + LL AD
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNG--------HLEIVEVLLKNGAD 72
Query: 294 PNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFL 353
NA L G TPLH+A ++VE+LLK+GA + A G TPLH+A+ G + I L
Sbjct: 73 VNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVL 132
Query: 354 LQAGAAPDTATVRGETPLHLAARANQTDIVRIL 386
L+ GA + G+T ++ D+ IL
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 81/148 (54%)
Query: 99 LYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKT 158
L AA+ D VR L++ G + TPLH+A G + +VE+L+ GA++ A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASD 77
Query: 159 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGA 218
G+TPLH AA +GH ++++L++ GA + + +G PLH+A++ H VL+ HGA
Sbjct: 78 LTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGA 137
Query: 219 GVDEITVDYLTALHVASHCGHVRVAKTL 246
V+ TA ++ G+ +A+ L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 83.2 bits (204), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 79/153 (51%), Gaps = 8/153 (5%)
Query: 168 AARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDY 227
AAR+G D+ + IL+ GA + + +G PLH+A+ H VL+ +GA V+ +
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTG 80
Query: 228 LTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTL 287
+T LH+A+ GH+ + + LL AD NA +G TPLH+A K H+ + + L
Sbjct: 81 ITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAK--------YGHLEIVEVL 132
Query: 288 LDRKADPNARALNGFTPLHIACKKNRYKVVELL 320
L AD NA+ G T I+ + E+L
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 64/110 (58%)
Query: 71 ATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNIT 130
+ G E+ ++L+ NGA +N L G TPL++AA H +V LL G + T
Sbjct: 56 SNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHT 115
Query: 131 PLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 180
PLH+A K+G + +VE+L+ GA++ A+ + G T + +G++++ +IL
Sbjct: 116 PLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 105 bits (262), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 84/161 (52%), Gaps = 8/161 (4%)
Query: 234 ASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKAD 293
A+ G+ K LL+ ADPNA +G TPLH A + H + K LL + AD
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENG--------HKEIVKLLLSKGAD 62
Query: 294 PNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFL 353
PNA+ +G TPLH A + ++V+LLL GA A G TPLH A+ G I L
Sbjct: 63 PNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLL 122
Query: 354 LQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVD 394
L GA P+T+ G TPL LA +IV++L + G ++
Sbjct: 123 LSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGWLE 163
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 85/150 (56%)
Query: 72 TGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITP 131
G ++ K L++NGA N +G TPL+ AA+ H +V+ LLSKG + TP
Sbjct: 14 NGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTP 73
Query: 132 LHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKT 191
LH A + G +V+LL+SKGA+ AK DG TPLH AA +GH ++ +L+ KGA +
Sbjct: 74 LHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSD 133
Query: 192 KNGLAPLHMASQGDHEAATRVLIYHGAGVD 221
+G PL +A + +E ++L G ++
Sbjct: 134 SDGRTPLDLAREHGNEEIVKLLEKQGGWLE 163
Score = 99.8 bits (247), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 79/141 (56%)
Query: 561 LTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDH 620
L E+GA A+ G TPLH AA+ G +I ++LL K A +++ +G TPLH A+ H
Sbjct: 23 LLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGH 82
Query: 621 QNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHL 680
+ + LLL +GA P+A +G TPLH AA+ +I LL A PN G TPL L
Sbjct: 83 KEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDL 142
Query: 681 SAQEGHTDMSSLLIEHGATVS 701
+ + G+ ++ LL + G +
Sbjct: 143 AREHGNEEIVKLLEKQGGWLE 163
Score = 93.2 bits (230), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 80/162 (49%), Gaps = 17/162 (10%)
Query: 433 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDG 492
AA D V+ LL NGA +A + +TPLH A+ G+ +I LLL GA +A DG
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Query: 493 YTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVD 552
T LH +A+ G E+ +L GA A G TPLH AA+ G +I ++LL K
Sbjct: 71 RTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSK----- 125
Query: 553 SQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 594
GA + G TPL LA ++G +I ++L
Sbjct: 126 ------------GADPNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 93.2 bits (230), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 84/160 (52%), Gaps = 8/160 (5%)
Query: 168 AARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDY 227
AA +G+ + + L+E GA + +G PLH A++ H+ ++L+ GA + D
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Query: 228 LTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTL 287
T LH A+ GH + K LL + ADPNA+ +G TPLH A + H + K L
Sbjct: 71 RTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAEN--------GHKEIVKLL 122
Query: 288 LDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASI 327
L + ADPN +G TPL +A + ++V+LL K G +
Sbjct: 123 LSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGWL 162
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 74/135 (54%)
Query: 582 AAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNG 641
AA+ G + LL+ A ++ +G TPLH A+ H+ + LLL +GA P+A +G
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Query: 642 YTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVS 701
TPLH AA+ +I LL A PNA+ G TPLH +A+ GH ++ LL+ GA +
Sbjct: 71 RTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 130
Query: 702 HQAKNGLTPLHLCAQ 716
+G TPL L +
Sbjct: 131 TSDSDGRTPLDLARE 145
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 76/150 (50%)
Query: 648 AAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNG 707
AA+ D LLE A PNA G TPLH +A+ GH ++ LL+ GA + + +G
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Query: 708 LTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVN 767
TPLH A+ + + + GA+ + G TPLH A+ G +V+ L+ GA+ N
Sbjct: 71 RTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 130
Query: 768 ATTNLGYTPLHQASQQGRVLIIDLLLGAGA 797
+ + G TPL A + G I+ LL G
Sbjct: 131 TSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 73/138 (52%)
Query: 627 LLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGH 686
LL+ GA P+A +G TPLH AA+ +I LL A PNA+ G TPLH +A+ GH
Sbjct: 23 LLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGH 82
Query: 687 TDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHI 746
++ LL+ GA + + +G TPLH A+ + + + GA+ + G TPL +
Sbjct: 83 KEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDL 142
Query: 747 ASHFGQLNMVRYLVENGA 764
A G +V+ L + G
Sbjct: 143 AREHGNEEIVKLLEKQGG 160
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 80/148 (54%)
Query: 99 LYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKT 158
L AA+ + V+ LL G + + TPLH A + G +V+LL+SKGA+ AK
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 67
Query: 159 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGA 218
DG TPLH AA +GH ++ +L+ KGA +K +G PLH A++ H+ ++L+ GA
Sbjct: 68 SDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGA 127
Query: 219 GVDEITVDYLTALHVASHCGHVRVAKTL 246
+ D T L +A G+ + K L
Sbjct: 128 DPNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 66/123 (53%)
Query: 285 KTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFM 344
K LL+ ADPNA +G TPLH A + ++V+LLL GA A G TPLH A+
Sbjct: 21 KDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAEN 80
Query: 345 GCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPL 404
G I LL GA P+ G TPLH AA +IV++LL GA + + +TPL
Sbjct: 81 GHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPL 140
Query: 405 HVA 407
+A
Sbjct: 141 DLA 143
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 73/133 (54%)
Query: 135 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNG 194
A + G V+ L+ GA+ A DG TPLH AA +GH ++ +L+ KGA +K +G
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Query: 195 LAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPN 254
PLH A++ H+ ++L+ GA + D T LH A+ GH + K LL + ADPN
Sbjct: 71 RTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 130
Query: 255 ARALNGFTPLHIA 267
+G TPL +A
Sbjct: 131 TSDSDGRTPLDLA 143
Score = 90.1 bits (222), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 82/167 (49%), Gaps = 17/167 (10%)
Query: 466 ASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKG 525
A+ GN D LL++GA +A DG T LH +A+ G E+ +L GA A G
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Query: 526 FTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKY 585
TPLH AA+ G +I ++LL K GA A G TPLH AA+
Sbjct: 71 RTPLHYAAENGHKEIVKLLLSK-----------------GADPNAKDSDGRTPLHYAAEN 113
Query: 586 GRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGA 632
G +I ++LL K A ++ +G TPL +A + ++ + LL +G
Sbjct: 114 GHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 89.7 bits (221), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 81/162 (50%), Gaps = 17/162 (10%)
Query: 499 SAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVA 558
+A+ G + L E+GA A+ G TPLH AA+ G +I ++LL K
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSK----------- 59
Query: 559 SILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHY 618
GA A G TPLH AA+ G +I ++LL K A +++ +G TPLH A+
Sbjct: 60 ------GADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAEN 113
Query: 619 DHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTL 660
H+ + LLL +GA P+ +G TPL +A + +I L
Sbjct: 114 GHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 81/171 (47%), Gaps = 26/171 (15%)
Query: 374 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLA 433
AA D V+ LL NGA +A + G TPLH A
Sbjct: 11 AAENGNKDRVKDLLENGADPNA--------------------------SDSDGRTPLHYA 44
Query: 434 ARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGY 493
A +IV++LL GA +A+ + +TPLH A+ G+ +I LLL GA +A DG
Sbjct: 45 AENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGR 104
Query: 494 TALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
T LH +A+ G E+ +L GA + G TPL LA ++G +I ++L
Sbjct: 105 TPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 85/178 (47%), Gaps = 26/178 (14%)
Query: 341 ASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARARED 400
A+ G + LL+ GA P+ + G TPLH AA +IV++LL GA +A+ +
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSD- 69
Query: 401 QTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQ 460
G TPLH AA +IV++LL GA +A+ + +
Sbjct: 70 -------------------------GRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGR 104
Query: 461 TPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASI 518
TPLH A+ G+ +I LLL GA + DG T L ++ + G +E+ +L + G +
Sbjct: 105 TPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGWL 162
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 78/170 (45%), Gaps = 26/170 (15%)
Query: 317 VELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAAR 376
V+ LL+ GA A+ G TPLH A+ G I LL GA P+ G TPLH AA
Sbjct: 20 VKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAE 79
Query: 377 ANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARA 436
+IV++LL GA +A+ + G TPLH AA
Sbjct: 80 NGHKEIVKLLLSKGADPNAKDSD--------------------------GRTPLHYAAEN 113
Query: 437 NQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVD 486
+IV++LL GA + + +TPL +A GN +I LL + G ++
Sbjct: 114 GHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGWLE 163
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 66/122 (54%)
Query: 681 SAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAG 740
+A+ G+ D L+E+GA + +G TPLH A+ + + + GA+ + G
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Query: 741 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 800
TPLH A+ G +V+ L+ GA+ NA + G TPLH A++ G I+ LLL GA PN
Sbjct: 71 RTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 130
Query: 801 AT 802
+
Sbjct: 131 TS 132
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 86/147 (58%)
Query: 72 TGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITP 131
G ++ K L++NGA +N +G TPL++AA+ H VV+ LLS+G + TP
Sbjct: 14 NGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTP 73
Query: 132 LHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKT 191
LH+A + G +V+LL+S+GA+ AK DG TPLH AA +GH V+ +L+ +GA +
Sbjct: 74 LHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSD 133
Query: 192 KNGLAPLHMASQGDHEAATRVLIYHGA 218
+G PL +A + +E ++L G
Sbjct: 134 SDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 103 bits (257), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 86/161 (53%), Gaps = 8/161 (4%)
Query: 234 ASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKAD 293
A+ G+ K LL+ AD NA +G TPLH+A + H V K LL + AD
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENG--------HKEVVKLLLSQGAD 62
Query: 294 PNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFL 353
PNA+ +G TPLH+A + +VV+LLL GA A G TPLH+A+ G + L
Sbjct: 63 PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLL 122
Query: 354 LQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVD 394
L GA P+T+ G TPL LA ++V++L + G ++
Sbjct: 123 LSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE 163
Score = 102 bits (255), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 83/141 (58%)
Query: 561 LTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDH 620
L E+GA + A+ G TPLHLAA+ G ++ ++LL + A +++ +G TPLH+A+ H
Sbjct: 23 LLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGH 82
Query: 621 QNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHL 680
+ V LLL +GA P+A +G TPLH+AA+ ++ LL A PN G TPL L
Sbjct: 83 KEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDL 142
Query: 681 SAQEGHTDMSSLLIEHGATVS 701
+ + G+ ++ LL + G +
Sbjct: 143 AREHGNEEVVKLLEKQGGWLE 163
Score = 99.8 bits (247), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 88/160 (55%), Gaps = 8/160 (5%)
Query: 168 AARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDY 227
AA +G+ + + L+E GA + + +G PLH+A++ H+ ++L+ GA + D
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 70
Query: 228 LTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTL 287
T LH+A+ GH V K LL + ADPNA+ +G TPLH+A + H V K L
Sbjct: 71 KTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAEN--------GHKEVVKLL 122
Query: 288 LDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASI 327
L + ADPN +G TPL +A + +VV+LL K G +
Sbjct: 123 LSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWL 162
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 83/153 (54%)
Query: 582 AAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNG 641
AA+ G + LL+ A V++ +G TPLH+A+ H+ V LLL +GA P+A +G
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 70
Query: 642 YTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVS 701
TPLH+AA+ ++ LL A PNA+ G TPLHL+A+ GH ++ LL+ GA +
Sbjct: 71 KTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPN 130
Query: 702 HQAKNGLTPLHLCAQEDKVNVATITMFNGAEID 734
+G TPL L + V + G ++
Sbjct: 131 TSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE 163
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 84/162 (51%), Gaps = 17/162 (10%)
Query: 433 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDG 492
AA D V+ LL NGA V+A + +TPLH+A+ G+ ++ LLL GA +A DG
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 70
Query: 493 YTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVD 552
T LH++A+ G EV +L GA A G TPLHLAA+ G ++ ++LL +
Sbjct: 71 KTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQ----- 125
Query: 553 SQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 594
GA + G TPL LA ++G ++ ++L
Sbjct: 126 ------------GADPNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 95.9 bits (237), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 76/133 (57%)
Query: 135 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNG 194
A + G V+ L+ GA++ A DG TPLH AA +GH V+ +L+ +GA +K +G
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 70
Query: 195 LAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPN 254
PLH+A++ H+ ++L+ GA + D T LH+A+ GH V K LL + ADPN
Sbjct: 71 KTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPN 130
Query: 255 ARALNGFTPLHIA 267
+G TPL +A
Sbjct: 131 TSDSDGRTPLDLA 143
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 86/171 (50%), Gaps = 26/171 (15%)
Query: 374 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLA 433
AA D V+ LL NGA V+A + G+TPLHLA
Sbjct: 11 AAENGNKDRVKDLLENGADVNA--------------------------SDSDGKTPLHLA 44
Query: 434 ARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGY 493
A ++V++LL GA +A+ + +TPLH+A+ G+ ++ LLL GA +A DG
Sbjct: 45 AENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGK 104
Query: 494 TALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
T LH++A+ G EV +L GA + G TPL LA ++G ++ ++L
Sbjct: 105 TPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 86/167 (51%), Gaps = 17/167 (10%)
Query: 466 ASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKG 525
A+ GN D LL++GA V+A DG T LH++A+ G EV +L GA A G
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 70
Query: 526 FTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKY 585
TPLHLAA+ G ++ ++LL + GA A G TPLHLAA+
Sbjct: 71 KTPLHLAAENGHKEVVKLLLSQ-----------------GADPNAKDSDGKTPLHLAAEN 113
Query: 586 GRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGA 632
G ++ ++LL + A ++ +G TPL +A + ++ V LL +G
Sbjct: 114 GHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 92.8 bits (229), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 75/138 (54%)
Query: 627 LLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGH 686
LL+ GA +A +G TPLH+AA+ ++ LL A PNA+ G TPLHL+A+ GH
Sbjct: 23 LLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGH 82
Query: 687 TDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHI 746
++ LL+ GA + + +G TPLHL A+ V + + GA+ + G TPL +
Sbjct: 83 KEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDL 142
Query: 747 ASHFGQLNMVRYLVENGA 764
A G +V+ L + G
Sbjct: 143 AREHGNEEVVKLLEKQGG 160
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 82/148 (55%)
Query: 99 LYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKT 158
L AA+ + V+ LL G + + TPLH+A + G +V+LL+S+GA+ AK
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 67
Query: 159 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGA 218
DG TPLH AA +GH V+ +L+ +GA +K +G PLH+A++ H+ ++L+ GA
Sbjct: 68 SDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGA 127
Query: 219 GVDEITVDYLTALHVASHCGHVRVAKTL 246
+ D T L +A G+ V K L
Sbjct: 128 DPNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 78/150 (52%)
Query: 648 AAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNG 707
AA+ D LLE A NA G TPLHL+A+ GH ++ LL+ GA + + +G
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 70
Query: 708 LTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVN 767
TPLHL A+ V + + GA+ + G TPLH+A+ G +V+ L+ GA+ N
Sbjct: 71 KTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPN 130
Query: 768 ATTNLGYTPLHQASQQGRVLIIDLLLGAGA 797
+ + G TPL A + G ++ LL G
Sbjct: 131 TSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 17/162 (10%)
Query: 499 SAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVA 558
+A+ G + L E+GA + A+ G TPLHLAA+ G ++ ++LL +
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQ----------- 59
Query: 559 SILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHY 618
GA A G TPLHLAA+ G ++ ++LL + A +++ +G TPLH+A+
Sbjct: 60 ------GADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAEN 113
Query: 619 DHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTL 660
H+ V LLL +GA P+ +G TPL +A + ++ L
Sbjct: 114 GHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 69/123 (56%)
Query: 285 KTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFM 344
K LL+ AD NA +G TPLH+A + +VV+LLL GA A G TPLH+A+
Sbjct: 21 KDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAEN 80
Query: 345 GCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPL 404
G + LL GA P+ G+TPLHLAA ++V++LL GA + + +TPL
Sbjct: 81 GHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPL 140
Query: 405 HVA 407
+A
Sbjct: 141 DLA 143
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 85/179 (47%), Gaps = 26/179 (14%)
Query: 308 ACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRG 367
A + V+ LL+ GA + A+ G TPLH+A+ G + LL GA P+ G
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 70
Query: 368 ETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGE 427
+TPLHLAA ++V++LL GA +A+ + +T
Sbjct: 71 KTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKT------------------------- 105
Query: 428 TPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVD 486
PLHLAA ++V++LL GA + + +TPL +A GN ++ LL + G ++
Sbjct: 106 -PLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE 163
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 69/122 (56%)
Query: 681 SAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAG 740
+A+ G+ D L+E+GA V+ +G TPLHL A+ V + + GA+ + G
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 70
Query: 741 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 800
TPLH+A+ G +V+ L+ GA+ NA + G TPLH A++ G ++ LLL GA PN
Sbjct: 71 KTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPN 130
Query: 801 AT 802
+
Sbjct: 131 TS 132
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 81/126 (64%)
Query: 433 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDG 492
AARA Q D VRIL+ NGA V+A TPLH+A++ G+ +I +LL++GA V+A G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYG 80
Query: 493 YTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVD 552
T LH++A G E+ +L + GA + A +GFTPLHLAA G ++I ++LL+ A V+
Sbjct: 81 ATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVN 140
Query: 553 SQGKVA 558
+Q K
Sbjct: 141 AQDKFG 146
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 91/171 (53%), Gaps = 26/171 (15%)
Query: 374 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLA 433
AARA Q D VRIL+ NGA V+A T G TPLHLA
Sbjct: 21 AARAGQDDEVRILMANGADVNA--------------------------TDWLGHTPLHLA 54
Query: 434 ARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGY 493
A+ +IV +LL+ GA V+A TPLH+A+ G+ +I +LL+HGA V+A +G+
Sbjct: 55 AKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGF 114
Query: 494 TALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
T LH++A +G E+ +L + GA + A K G T ++ G +A++L
Sbjct: 115 TPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 80/141 (56%)
Query: 553 SQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPL 612
Q IL +GA + AT G TPLHLAAK G ++I ++LL+ A V++ G TPL
Sbjct: 25 GQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPL 84
Query: 613 HVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESK 672
H+A+ H + +LL GA +A G+TPLH+AA ++I LL+Y A NA+ K
Sbjct: 85 HLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDK 144
Query: 673 AGFTPLHLSAQEGHTDMSSLL 693
G T +S G+ D++ +L
Sbjct: 145 FGKTAFDISIDNGNEDLAEIL 165
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 88/166 (53%), Gaps = 17/166 (10%)
Query: 499 SAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVA 558
+A+ GQD+ IL +GA + AT G TPLHLAAK G ++I ++LL+
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLK------------ 68
Query: 559 SILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHY 618
GA + A G TPLHLAA G ++I ++LL+ A V+++ G TPLH+A++
Sbjct: 69 -----YGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYD 123
Query: 619 DHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYN 664
H + +LL GA +A K G T I+ D+A L + N
Sbjct: 124 GHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 92.4 bits (228), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 80/141 (56%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
GQ++ +IL+ NGA +N G TPL++AA+ H +V LL G + + TPL
Sbjct: 25 GQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPL 84
Query: 133 HVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTK 192
H+A G + +VE+L+ GA++ AK +G TPLH AA GH ++++L++ GA + ++ K
Sbjct: 85 HLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDK 144
Query: 193 NGLAPLHMASQGDHEAATRVL 213
G ++ +E +L
Sbjct: 145 FGKTAFDISIDNGNEDLAEIL 165
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 80/145 (55%)
Query: 648 AAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNG 707
AA+ Q D L+ A NA G TPLHL+A+ GH ++ +L+++GA V+ G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYG 80
Query: 708 LTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVN 767
TPLHL A + + + + +GA+++ GFTPLH+A++ G L +V L++ GA+VN
Sbjct: 81 ATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVN 140
Query: 768 ATTNLGYTPLHQASQQGRVLIIDLL 792
A G T + G + ++L
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 71/123 (57%)
Query: 285 KTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFM 344
+ L+ AD NA G TPLH+A K ++VE+LLKYGA + A G TPLH+A+
Sbjct: 31 RILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADN 90
Query: 345 GCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPL 404
G + I LL+ GA + G TPLHLAA +IV +LL+ GA V+A+ + +T
Sbjct: 91 GHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Query: 405 HVA 407
++
Sbjct: 151 DIS 153
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 75/134 (55%)
Query: 626 LLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEG 685
+L+ GA +A G+TPLH+AAK ++I LL+Y A NA G TPLHL+A G
Sbjct: 32 ILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNG 91
Query: 686 HTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLH 745
H ++ +L++HGA V+ + G TPLHL A + + + + + GA+++ K G T
Sbjct: 92 HLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFD 151
Query: 746 IASHFGQLNMVRYL 759
I+ G ++ L
Sbjct: 152 ISIDNGNEDLAEIL 165
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 81/144 (56%)
Query: 582 AAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNG 641
AA+ G+ ++L+ A V++ G TPLH+A+ H + +LL GA +A G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYG 80
Query: 642 YTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVS 701
TPLH+AA ++I LL++ A NA+ GFTPLHL+A +GH ++ +L+++GA V+
Sbjct: 81 ATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVN 140
Query: 702 HQAKNGLTPLHLCAQEDKVNVATI 725
Q K G T + ++A I
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEI 164
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 85/171 (49%), Gaps = 26/171 (15%)
Query: 308 ACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRG 367
A + + V +L+ GA + AT G TPLH+A+ G + I LL+ GA + G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYG 80
Query: 368 ETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGE 427
TPLHLAA +IV +LL++GA V+A+ E G
Sbjct: 81 ATPLHLAADNGHLEIVEVLLKHGADVNAKDYE--------------------------GF 114
Query: 428 TPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLL 478
TPLHLAA +IV +LL+ GA V+A+ + +T ++ GN D+A +L
Sbjct: 115 TPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 76/155 (49%), Gaps = 8/155 (5%)
Query: 234 ASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKAD 293
A+ G + L+ AD NA G TPLH+A K H+ + + LL AD
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAK--------TGHLEIVEVLLKYGAD 72
Query: 294 PNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFL 353
NA G TPLH+A ++VE+LLK+GA + A G TPLH+A++ G + I L
Sbjct: 73 VNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVL 132
Query: 354 LQAGAAPDTATVRGETPLHLAARANQTDIVRILLR 388
L+ GA + G+T ++ D+ IL +
Sbjct: 133 LKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 78/139 (56%), Gaps = 1/139 (0%)
Query: 681 SAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAG 740
+A+ G D +L+ +GA V+ G TPLHL A+ + + + + GA+++ G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYG 80
Query: 741 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 800
TPLH+A+ G L +V L+++GA+VNA G+TPLH A+ G + I+++LL GA N
Sbjct: 81 ATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVN 140
Query: 801 ATTNLFCCA-TILVKNGAE 818
A A I + NG E
Sbjct: 141 AQDKFGKTAFDISIDNGNE 159
Score = 83.2 bits (204), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 76/134 (56%)
Query: 135 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNG 194
A + G+ V +L++ GA++ A G TPLH AA++GH ++++L++ GA + + G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYG 80
Query: 195 LAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPN 254
PLH+A+ H VL+ HGA V+ + T LH+A++ GH+ + + LL AD N
Sbjct: 81 ATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVN 140
Query: 255 ARALNGFTPLHIAC 268
A+ G T I+
Sbjct: 141 AQDKFGKTAFDISI 154
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 80/148 (54%)
Query: 99 LYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKT 158
L AA+ D VR L++ G + TPLH+A K G + +VE+L+ GA++ A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWD 77
Query: 159 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGA 218
G TPLH AA +GH ++++L++ GA + +K G PLH+A+ H VL+ +GA
Sbjct: 78 NYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGA 137
Query: 219 GVDEITVDYLTALHVASHCGHVRVAKTL 246
V+ TA ++ G+ +A+ L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 80/155 (51%), Gaps = 8/155 (5%)
Query: 168 AARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDY 227
AAR+G D+ + IL+ GA + + G PLH+A++ H VL+ +GA V+
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYG 80
Query: 228 LTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTL 287
T LH+A+ GH+ + + LL AD NA+ GFTPLH+A ++ H+ + + L
Sbjct: 81 ATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLA--------AYDGHLEIVEVL 132
Query: 288 LDRKADPNARALNGFTPLHIACKKNRYKVVELLLK 322
L AD NA+ G T I+ + E+L K
Sbjct: 133 LKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 60/109 (55%)
Query: 72 TGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITP 131
TG E+ ++L+ GA +N G TPL++AA H +V LL G + TP
Sbjct: 57 TGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTP 116
Query: 132 LHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 180
LH+A G + +VE+L+ GA++ A+ + G T + +G++++ +IL
Sbjct: 117 LHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 81/124 (65%)
Query: 433 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDG 492
AARA Q D VRIL+ NGA V+A TPLH+A+R+G+ +I +LL++GA V+A G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSG 80
Query: 493 YTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVD 552
T LH++AK G E+ +L + GA + A G TPLHLAA G ++I ++LL+ A V+
Sbjct: 81 STPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVN 140
Query: 553 SQGK 556
+Q K
Sbjct: 141 AQDK 144
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 92/171 (53%), Gaps = 26/171 (15%)
Query: 374 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLA 433
AARA Q D VRIL+ NGA V+A ED G+TPLHLA
Sbjct: 21 AARAGQDDEVRILMANGADVNA---ED-----------------------TYGDTPLHLA 54
Query: 434 ARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGY 493
AR +IV +LL+NGA V+A TPLH+A++ G+ +I +LL++GA V+A G
Sbjct: 55 ARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGS 114
Query: 494 TALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
T LH++A G E+ +L + GA + A K G T ++ G +A++L
Sbjct: 115 TPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 79/140 (56%)
Query: 554 QGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLH 613
Q IL +GA + A G TPLHLAA+ G ++I ++LL+ A V++ +G TPLH
Sbjct: 26 QDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLH 85
Query: 614 VASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKA 673
+A+ H + +LL GA +A G TPLH+AA ++I LL+Y A NA+ K
Sbjct: 86 LAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKF 145
Query: 674 GFTPLHLSAQEGHTDMSSLL 693
G T +S G+ D++ +L
Sbjct: 146 GKTAFDISIDNGNEDLAEIL 165
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 84/144 (58%)
Query: 582 AAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNG 641
AA+ G+ ++L+ A V+++ G TPLH+A+ H + +LL GA +A+ +G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSG 80
Query: 642 YTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVS 701
TPLH+AAK+ ++I LL+Y A NA+ G TPLHL+A GH ++ +L+++GA V+
Sbjct: 81 STPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVN 140
Query: 702 HQAKNGLTPLHLCAQEDKVNVATI 725
Q K G T + ++A I
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEI 164
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 85/162 (52%), Gaps = 17/162 (10%)
Query: 499 SAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVA 558
+A+ GQD+ IL +GA + A G TPLHLAA+ G ++I ++LL+
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLK------------ 68
Query: 559 SILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHY 618
+GA + A G TPLHLAAK G ++I ++LL+ A V++ G TPLH+A+
Sbjct: 69 -----NGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADT 123
Query: 619 DHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTL 660
H + +LL GA +A K G T I+ D+A L
Sbjct: 124 GHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 89/162 (54%), Gaps = 17/162 (10%)
Query: 466 ASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKG 525
A+R G D +L+ +GA V+A G T LH++A+ G E+ +L ++GA + A G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSG 80
Query: 526 FTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKY 585
TPLHLAAK G ++I ++LL+ GA + A G TPLHLAA
Sbjct: 81 STPLHLAAKRGHLEIVEVLLK-----------------YGADVNADDTIGSTPLHLAADT 123
Query: 586 GRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLL 627
G ++I ++LL+ A V++Q K G T ++ ++++A +L
Sbjct: 124 GHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 89.7 bits (221), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 81/139 (58%), Gaps = 1/139 (0%)
Query: 681 SAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAG 740
+A+ G D +L+ +GA V+ + G TPLHL A+ + + + + NGA+++ + +G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSG 80
Query: 741 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 800
TPLH+A+ G L +V L++ GA+VNA +G TPLH A+ G + I+++LL GA N
Sbjct: 81 STPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVN 140
Query: 801 ATTNLFCCA-TILVKNGAE 818
A A I + NG E
Sbjct: 141 AQDKFGKTAFDISIDNGNE 159
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 77/153 (50%), Gaps = 8/153 (5%)
Query: 234 ASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKAD 293
A+ G + L+ AD NA G TPLH+A + H+ + + LL AD
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAAR--------VGHLEIVEVLLKNGAD 72
Query: 294 PNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFL 353
NA +G TPLH+A K+ ++VE+LLKYGA + A G TPLH+A+ G + I L
Sbjct: 73 VNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVL 132
Query: 354 LQAGAAPDTATVRGETPLHLAARANQTDIVRIL 386
L+ GA + G+T ++ D+ IL
Sbjct: 133 LKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 80/141 (56%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
GQ++ +IL+ NGA +N + G TPL++AA+ H +V LL G + TPL
Sbjct: 25 GQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPL 84
Query: 133 HVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTK 192
H+A K G + +VE+L+ GA++ A G TPLH AA +GH ++++L++ GA + ++ K
Sbjct: 85 HLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDK 144
Query: 193 NGLAPLHMASQGDHEAATRVL 213
G ++ +E +L
Sbjct: 145 FGKTAFDISIDNGNEDLAEIL 165
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 76/137 (55%)
Query: 648 AAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNG 707
AA+ Q D L+ A NAE G TPLHL+A+ GH ++ +L+++GA V+ +G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSG 80
Query: 708 LTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVN 767
TPLHL A+ + + + + GA+++ G TPLH+A+ G L +V L++ GA+VN
Sbjct: 81 STPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVN 140
Query: 768 ATTNLGYTPLHQASQQG 784
A G T + G
Sbjct: 141 AQDKFGKTAFDISIDNG 157
Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 71/123 (57%)
Query: 285 KTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFM 344
+ L+ AD NA G TPLH+A + ++VE+LLK GA + A SG TPLH+A+
Sbjct: 31 RILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKR 90
Query: 345 GCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPL 404
G + I LL+ GA + G TPLHLAA +IV +LL+ GA V+A+ + +T
Sbjct: 91 GHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Query: 405 HVA 407
++
Sbjct: 151 DIS 153
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 85/171 (49%), Gaps = 26/171 (15%)
Query: 308 ACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRG 367
A + + V +L+ GA + A G TPLH+A+ +G + I LL+ GA + G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSG 80
Query: 368 ETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGE 427
TPLHLAA+ +IV +LL+ GA V+A D T G
Sbjct: 81 STPLHLAAKRGHLEIVEVLLKYGADVNA----DDTI----------------------GS 114
Query: 428 TPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLL 478
TPLHLAA +IV +LL+ GA V+A+ + +T ++ GN D+A +L
Sbjct: 115 TPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 8/153 (5%)
Query: 201 ASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNG 260
A++ + R+L+ +GA V+ T LH+A+ GH+ + + LL AD NA +G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSG 80
Query: 261 FTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELL 320
TPLH+A K+ H+ + + LL AD NA G TPLH+A ++VE+L
Sbjct: 81 STPLHLAAKR--------GHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVL 132
Query: 321 LKYGASIAATTESGLTPLHVASFMGCMNIAIFL 353
LKYGA + A + G T ++ G ++A L
Sbjct: 133 LKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 80/148 (54%)
Query: 99 LYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKT 158
L AA+ D VR L++ G + + TPLH+A + G + +VE+L+ GA++ A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALD 77
Query: 159 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGA 218
G TPLH AA+ GH ++++L++ GA + + G PLH+A+ H VL+ +GA
Sbjct: 78 FSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGA 137
Query: 219 GVDEITVDYLTALHVASHCGHVRVAKTL 246
V+ TA ++ G+ +A+ L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 79.3 bits (194), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 76/134 (56%)
Query: 135 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNG 194
A + G+ V +L++ GA++ A+ G TPLH AAR GH ++++L++ GA + + +G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSG 80
Query: 195 LAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPN 254
PLH+A++ H VL+ +GA V+ T LH+A+ GH+ + + LL AD N
Sbjct: 81 STPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVN 140
Query: 255 ARALNGFTPLHIAC 268
A+ G T I+
Sbjct: 141 AQDKFGKTAFDISI 154
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 73/134 (54%)
Query: 626 LLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEG 685
+L+ GA +A G TPLH+AA+ ++I LL+ A NA +G TPLHL+A+ G
Sbjct: 32 ILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRG 91
Query: 686 HTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLH 745
H ++ +L+++GA V+ G TPLHL A + + + + GA+++ K G T
Sbjct: 92 HLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFD 151
Query: 746 IASHFGQLNMVRYL 759
I+ G ++ L
Sbjct: 152 ISIDNGNEDLAEIL 165
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 103 bits (257), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 81/141 (57%)
Query: 553 SQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPL 612
Q IL +GA + A G TPLHL G ++I ++LL+ A V++ K+G TPL
Sbjct: 25 GQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPL 84
Query: 613 HVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESK 672
H+A++ H + +LL GA +A+ GYTPLH+AA+ ++I LL+Y A NA+ K
Sbjct: 85 HLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDK 144
Query: 673 AGFTPLHLSAQEGHTDMSSLL 693
G T +S G+ D++ +L
Sbjct: 145 FGKTAFDISIDNGNEDLAEIL 165
Score = 103 bits (256), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 80/126 (63%)
Query: 433 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDG 492
AARA Q D VRIL+ NGA V+A TPLH+ G+ +I +LL++ A V+A K G
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSG 80
Query: 493 YTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVD 552
+T LH++A G E+ +L + GA + A +G+TPLHLAA+ G ++I ++LL+ A V+
Sbjct: 81 WTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVN 140
Query: 553 SQGKVA 558
+Q K
Sbjct: 141 AQDKFG 146
Score = 95.9 bits (237), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 73/123 (59%)
Query: 285 KTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFM 344
+ L+ AD NA G TPLH+ +++E+LLKY A + A+ +SG TPLH+A++
Sbjct: 31 RILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYR 90
Query: 345 GCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPL 404
G + I LL+ GA + +G TPLHLAA +IV +LL+ GA V+A+ + +T
Sbjct: 91 GHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Query: 405 HVA 407
++
Sbjct: 151 DIS 153
Score = 95.5 bits (236), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 87/171 (50%), Gaps = 26/171 (15%)
Query: 374 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLA 433
AARA Q D VRIL+ NGA V+A G TPLHL
Sbjct: 21 AARAGQDDEVRILMANGADVNA--------------------------NDWFGITPLHLV 54
Query: 434 ARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGY 493
+I+ +LL+ A V+A + TPLH+A+ G+ +I +LL++GA V+A GY
Sbjct: 55 VNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGY 114
Query: 494 TALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
T LH++A++G E+ +L + GA + A K G T ++ G +A++L
Sbjct: 115 TPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 84/144 (58%)
Query: 582 AAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNG 641
AA+ G+ ++L+ A V++ G+TPLH+ + H + +LL A +A K+G
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSG 80
Query: 642 YTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVS 701
+TPLH+AA + ++I LL+Y A NA G+TPLHL+A++GH ++ +L+++GA V+
Sbjct: 81 WTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVN 140
Query: 702 HQAKNGLTPLHLCAQEDKVNVATI 725
Q K G T + ++A I
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEI 164
Score = 93.6 bits (231), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 84/166 (50%), Gaps = 17/166 (10%)
Query: 499 SAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVA 558
+A+ GQD+ IL +GA + A G TPLHL G ++I ++LL+
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLK------------ 68
Query: 559 SILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHY 618
A + A+ K G+TPLHLAA G ++I ++LL+ A V++ G TPLH+A+
Sbjct: 69 -----YAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAED 123
Query: 619 DHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYN 664
H + +LL GA +A K G T I+ D+A L + N
Sbjct: 124 GHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 80/139 (57%), Gaps = 1/139 (0%)
Query: 681 SAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAG 740
+A+ G D +L+ +GA V+ G+TPLHL + + + + A+++ K+G
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSG 80
Query: 741 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 800
+TPLH+A++ G L +V L++ GA+VNA GYTPLH A++ G + I+++LL GA N
Sbjct: 81 WTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVN 140
Query: 801 ATTNLFCCA-TILVKNGAE 818
A A I + NG E
Sbjct: 141 AQDKFGKTAFDISIDNGNE 159
Score = 89.4 bits (220), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 73/137 (53%)
Query: 648 AAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNG 707
AA+ Q D L+ A NA G TPLHL GH ++ +L+++ A V+ K+G
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSG 80
Query: 708 LTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVN 767
TPLHL A + + + + GA+++ + G+TPLH+A+ G L +V L++ GA+VN
Sbjct: 81 WTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVN 140
Query: 768 ATTNLGYTPLHQASQQG 784
A G T + G
Sbjct: 141 AQDKFGKTAFDISIDNG 157
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 74/134 (55%)
Query: 626 LLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEG 685
+L+ GA +A G TPLH+ ++I LL+Y A NA K+G+TPLHL+A G
Sbjct: 32 ILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRG 91
Query: 686 HTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLH 745
H ++ +L+++GA V+ G TPLHL A++ + + + + GA+++ K G T
Sbjct: 92 HLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFD 151
Query: 746 IASHFGQLNMVRYL 759
I+ G ++ L
Sbjct: 152 ISIDNGNEDLAEIL 165
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 75/153 (49%), Gaps = 8/153 (5%)
Query: 234 ASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKAD 293
A+ G + L+ AD NA G TPLH+ H+ + + LL AD
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNG--------HLEIIEVLLKYAAD 72
Query: 294 PNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFL 353
NA +G+TPLH+A + ++VE+LLKYGA + A G TPLH+A+ G + I L
Sbjct: 73 VNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVL 132
Query: 354 LQAGAAPDTATVRGETPLHLAARANQTDIVRIL 386
L+ GA + G+T ++ D+ IL
Sbjct: 133 LKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 75/141 (53%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
GQ++ +IL+ NGA +N G TPL++ H ++ LL + + + TPL
Sbjct: 25 GQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPL 84
Query: 133 HVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTK 192
H+A G + +VE+L+ GA++ A G TPLH AA GH ++++L++ GA + ++ K
Sbjct: 85 HLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDK 144
Query: 193 NGLAPLHMASQGDHEAATRVL 213
G ++ +E +L
Sbjct: 145 FGKTAFDISIDNGNEDLAEIL 165
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 74/134 (55%)
Query: 135 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNG 194
A + G+ V +L++ GA++ A G+TPLH +GH +I++L++ A + + K+G
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSG 80
Query: 195 LAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPN 254
PLH+A+ H VL+ +GA V+ + T LH+A+ GH+ + + LL AD N
Sbjct: 81 WTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVN 140
Query: 255 ARALNGFTPLHIAC 268
A+ G T I+
Sbjct: 141 AQDKFGKTAFDISI 154
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 78/148 (52%)
Query: 99 LYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKT 158
L AA+ D VR L++ G + ITPLH+ G + ++E+L+ A++ A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASD 77
Query: 159 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGA 218
+ G TPLH AA GH ++++L++ GA + + G PLH+A++ H VL+ +GA
Sbjct: 78 KSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGA 137
Query: 219 GVDEITVDYLTALHVASHCGHVRVAKTL 246
V+ TA ++ G+ +A+ L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 76/155 (49%), Gaps = 8/155 (5%)
Query: 168 AARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDY 227
AAR+G D+ + IL+ GA + + G+ PLH+ H VL+ + A V+
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSG 80
Query: 228 LTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTL 287
T LH+A++ GH+ + + LL AD NA G+TPLH+A + H+ + + L
Sbjct: 81 WTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAED--------GHLEIVEVL 132
Query: 288 LDRKADPNARALNGFTPLHIACKKNRYKVVELLLK 322
L AD NA+ G T I+ + E+L K
Sbjct: 133 LKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 80/171 (46%), Gaps = 26/171 (15%)
Query: 308 ACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRG 367
A + + V +L+ GA + A G+TPLH+ G + I LL+ A + + G
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSG 80
Query: 368 ETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGE 427
TPLHLAA +IV +LL+ GA V+A + T
Sbjct: 81 WTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYT------------------------- 115
Query: 428 TPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLL 478
PLHLAA +IV +LL+ GA V+A+ + +T ++ GN D+A +L
Sbjct: 116 -PLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 103 bits (256), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 79/124 (63%)
Query: 433 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDG 492
AARA Q D VRIL+ NGA V+A TPLH+A+ G+ +I +LL+HGA VDA G
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYG 80
Query: 493 YTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVD 552
+T LH++A G E+ +L + GA + A G TPLHLAA G ++I ++LL+ A V+
Sbjct: 81 FTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVN 140
Query: 553 SQGK 556
+Q K
Sbjct: 141 AQDK 144
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 76/137 (55%)
Query: 554 QGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLH 613
Q IL +GA + A G TPLHLAA G ++I ++LL+ A VD+ G TPLH
Sbjct: 26 QDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLH 85
Query: 614 VASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKA 673
+A+ H + +LL GA +A G TPLH+AA + ++I LL+Y A NA+ K
Sbjct: 86 LAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKF 145
Query: 674 GFTPLHLSAQEGHTDMS 690
G T +S G+ D++
Sbjct: 146 GKTAFDISIDNGNEDLA 162
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 89/169 (52%), Gaps = 26/169 (15%)
Query: 374 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLA 433
AARA Q D VRIL+ NGA V+A D T L TPLHLA
Sbjct: 21 AARAGQDDEVRILIANGADVNAV---DNTGL-----------------------TPLHLA 54
Query: 434 ARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGY 493
A + +IV +LL++GA VDA TPLH+A+ G+ +I +LL++GA V+A G
Sbjct: 55 AVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGS 114
Query: 494 TALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQ 542
T LH++A EG E+ +L + GA + A K G T ++ G +A+
Sbjct: 115 TPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAK 163
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 83/161 (51%), Gaps = 17/161 (10%)
Query: 499 SAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVA 558
+A+ GQD+ IL +GA + A G TPLHLAA G ++I ++LL+
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKH----------- 69
Query: 559 SILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHY 618
GA + A GFTPLHLAA G ++I ++LL+ A V++ G TPLH+A+
Sbjct: 70 ------GADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADE 123
Query: 619 DHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATT 659
H + +LL GA +A K G T I+ D+A +
Sbjct: 124 GHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAKS 164
Score = 92.8 bits (229), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 79/139 (56%), Gaps = 1/139 (0%)
Query: 681 SAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAG 740
+A+ G D +LI +GA V+ GLTPLHL A + + + + +GA++D G
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYG 80
Query: 741 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 800
FTPLH+A+ G L +V L++ GA+VNA G TPLH A+ +G + I+++LL GA N
Sbjct: 81 FTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVN 140
Query: 801 ATTNLFCCA-TILVKNGAE 818
A A I + NG E
Sbjct: 141 AQDKFGKTAFDISIDNGNE 159
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 85/168 (50%), Gaps = 26/168 (15%)
Query: 308 ACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRG 367
A + + V +L+ GA + A +GLTPLH+A+ G + I LL+ GA D A V G
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYG 80
Query: 368 ETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGE 427
TPLHLAA +IV +LL+ GA V+A D T G
Sbjct: 81 FTPLHLAAMTGHLEIVEVLLKYGADVNAF---DMT-----------------------GS 114
Query: 428 TPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIA 475
TPLHLAA +IV +LL+ GA V+A+ + +T ++ GN D+A
Sbjct: 115 TPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLA 162
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 76/132 (57%)
Query: 582 AAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNG 641
AA+ G+ ++L+ A V++ G+TPLH+A+ H + +LL GA A G
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYG 80
Query: 642 YTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVS 701
+TPLH+AA ++I LL+Y A NA G TPLHL+A EGH ++ +L+++GA V+
Sbjct: 81 FTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVN 140
Query: 702 HQAKNGLTPLHL 713
Q K G T +
Sbjct: 141 AQDKFGKTAFDI 152
Score = 89.4 bits (220), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 71/123 (57%)
Query: 285 KTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFM 344
+ L+ AD NA G TPLH+A ++VE+LLK+GA + A G TPLH+A+
Sbjct: 31 RILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMT 90
Query: 345 GCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPL 404
G + I LL+ GA + + G TPLHLAA +IV +LL+ GA V+A+ + +T
Sbjct: 91 GHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Query: 405 HVA 407
++
Sbjct: 151 DIS 153
Score = 89.4 bits (220), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 71/137 (51%)
Query: 648 AAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNG 707
AA+ Q D L+ A NA G TPLHL+A GH ++ +L++HGA V G
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYG 80
Query: 708 LTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVN 767
TPLHL A + + + + GA+++ G TPLH+A+ G L +V L++ GA+VN
Sbjct: 81 FTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVN 140
Query: 768 ATTNLGYTPLHQASQQG 784
A G T + G
Sbjct: 141 AQDKFGKTAFDISIDNG 157
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 72/122 (59%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
GQ++ +IL+ NGA +N G TPL++AA H +V LL G + A + TPL
Sbjct: 25 GQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPL 84
Query: 133 HVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTK 192
H+A G + +VE+L+ GA++ A G TPLH AA GH ++++L++ GA + ++ K
Sbjct: 85 HLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDK 144
Query: 193 NG 194
G
Sbjct: 145 FG 146
Score = 86.3 bits (212), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 74/132 (56%)
Query: 626 LLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEG 685
+L+ GA +AV G TPLH+AA ++I LL++ A +A GFTPLHL+A G
Sbjct: 32 ILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTG 91
Query: 686 HTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLH 745
H ++ +L+++GA V+ G TPLHL A E + + + + GA+++ K G T
Sbjct: 92 HLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFD 151
Query: 746 IASHFGQLNMVR 757
I+ G ++ +
Sbjct: 152 ISIDNGNEDLAK 163
Score = 83.2 bits (204), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 75/133 (56%)
Query: 135 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNG 194
A + G+ V +LI+ GA++ A GLTPLH AA SGH ++++L++ GA + + G
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYG 80
Query: 195 LAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPN 254
PLH+A+ H VL+ +GA V+ + T LH+A+ GH+ + + LL AD N
Sbjct: 81 FTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVN 140
Query: 255 ARALNGFTPLHIA 267
A+ G T I+
Sbjct: 141 AQDKFGKTAFDIS 153
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 75/151 (49%), Gaps = 8/151 (5%)
Query: 234 ASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKAD 293
A+ G + L+ AD NA G TPLH+A H+ + + LL AD
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAV--------SGHLEIVEVLLKHGAD 72
Query: 294 PNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFL 353
+A + GFTPLH+A ++VE+LLKYGA + A +G TPLH+A+ G + I L
Sbjct: 73 VDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVL 132
Query: 354 LQAGAAPDTATVRGETPLHLAARANQTDIVR 384
L+ GA + G+T ++ D+ +
Sbjct: 133 LKYGADVNAQDKFGKTAFDISIDNGNEDLAK 163
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 80/147 (54%)
Query: 99 LYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKT 158
L AA+ D VR L++ G + +TPLH+A G + +VE+L+ GA+++A
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD 77
Query: 159 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGA 218
G TPLH AA +GH ++++L++ GA + + G PLH+A+ H VL+ +GA
Sbjct: 78 VYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGA 137
Query: 219 GVDEITVDYLTALHVASHCGHVRVAKT 245
V+ TA ++ G+ +AK+
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAKS 164
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 60/105 (57%)
Query: 72 TGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITP 131
+G E+ ++L+ +GA ++ + GFTPL++AA H +V LL G + TP
Sbjct: 57 SGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTP 116
Query: 132 LHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNV 176
LH+A G + +VE+L+ GA++ A+ + G T + +G++++
Sbjct: 117 LHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDL 161
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 81/124 (65%)
Query: 433 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDG 492
AARA Q D VRIL+ NGA +A +TPLH+A+ +G+ +I +LL++GA V+A +G
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNG 68
Query: 493 YTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVD 552
T LH++A G E+ +L + GA + A G TPL+LAA +G ++I ++LL+ A V+
Sbjct: 69 TTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVN 128
Query: 553 SQGK 556
+Q K
Sbjct: 129 AQDK 132
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 87/171 (50%), Gaps = 26/171 (15%)
Query: 374 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLA 433
AARA Q D VRIL+ NGA +A G TPLH+A
Sbjct: 9 AARAGQDDEVRILMANGADANAYDH--------------------------YGRTPLHMA 42
Query: 434 ARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGY 493
A +IV +LLRNGA V+A TPLH+A+ LG+ +I +LL++GA V+A G
Sbjct: 43 AAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGI 102
Query: 494 TALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
T L+++A G E+ +L + GA + A K G T ++ G +A++L
Sbjct: 103 TPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLAEIL 153
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 86/162 (53%), Gaps = 17/162 (10%)
Query: 499 SAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVA 558
+A+ GQD+ IL +GA A G TPLH+AA G ++I ++LL+
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLR------------ 56
Query: 559 SILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHY 618
+GA + A G TPLHLAA G ++I ++LL+ A V+++ G+TPL++A+++
Sbjct: 57 -----NGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYW 111
Query: 619 DHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTL 660
H + +LL GA +A K G T I+ D+A L
Sbjct: 112 GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLAEIL 153
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 81/160 (50%), Gaps = 26/160 (16%)
Query: 352 FLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLR 411
L+ GA + G TPLH+AA +IV +LLRNGA V+A
Sbjct: 20 ILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNA---------------- 63
Query: 412 RFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGN 471
G TPLHLAA +IV +LL+ GA V+A+ TPL++A+ G+
Sbjct: 64 ----------VDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGH 113
Query: 472 GDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASIL 511
+I +LL+HGA V+A K G TA IS G +++A IL
Sbjct: 114 LEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLAEIL 153
Score = 90.5 bits (223), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 77/141 (54%)
Query: 553 SQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPL 612
Q IL +GA A G TPLH+AA G ++I ++LL+ A V++ NG TPL
Sbjct: 13 GQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPL 72
Query: 613 HVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESK 672
H+A+ H + +LL GA +A G TPL++AA ++I LL++ A NA+ K
Sbjct: 73 HLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDK 132
Query: 673 AGFTPLHLSAQEGHTDMSSLL 693
G T +S G+ D++ +L
Sbjct: 133 FGKTAFDISIDIGNEDLAEIL 153
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 80/144 (55%)
Query: 582 AAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNG 641
AA+ G+ ++L+ A ++ G TPLH+A+ H + +LL GA +AV NG
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNG 68
Query: 642 YTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVS 701
TPLH+AA ++I LL+Y A NA+ G TPL+L+A GH ++ +L++HGA V+
Sbjct: 69 TTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVN 128
Query: 702 HQAKNGLTPLHLCAQEDKVNVATI 725
Q K G T + ++A I
Sbjct: 129 AQDKFGKTAFDISIDIGNEDLAEI 152
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 73/130 (56%)
Query: 648 AAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNG 707
AA+ Q D L+ A NA G TPLH++A GH ++ +L+ +GA V+ NG
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNG 68
Query: 708 LTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVN 767
TPLHL A + + + + GA+++ G TPL++A+++G L +V L+++GA+VN
Sbjct: 69 TTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVN 128
Query: 768 ATTNLGYTPL 777
A G T
Sbjct: 129 AQDKFGKTAF 138
Score = 86.7 bits (213), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 72/122 (59%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
GQ++ +IL+ NGA N G TPL+MAA H +V LL G + + TPL
Sbjct: 13 GQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPL 72
Query: 133 HVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTK 192
H+A G + +VE+L+ GA++ AK G+TPL+ AA GH ++++L++ GA + ++ K
Sbjct: 73 HLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDK 132
Query: 193 NG 194
G
Sbjct: 133 FG 134
Score = 86.3 bits (212), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 77/153 (50%), Gaps = 8/153 (5%)
Query: 234 ASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKAD 293
A+ G + L+ AD NA G TPLH+A H+ + + LL AD
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAA--------VGHLEIVEVLLRNGAD 60
Query: 294 PNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFL 353
NA NG TPLH+A ++VE+LLKYGA + A +G+TPL++A++ G + I L
Sbjct: 61 VNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVL 120
Query: 354 LQAGAAPDTATVRGETPLHLAARANQTDIVRIL 386
L+ GA + G+T ++ D+ IL
Sbjct: 121 LKHGADVNAQDKFGKTAFDISIDIGNEDLAEIL 153
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 86/171 (50%), Gaps = 26/171 (15%)
Query: 308 ACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRG 367
A + + V +L+ GA A G TPLH+A+ +G + I LL+ GA + G
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNG 68
Query: 368 ETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGE 427
TPLHLAA +IV +LL+ GA V+A+ D T G
Sbjct: 69 TTPLHLAASLGHLEIVEVLLKYGADVNAK---DAT-----------------------GI 102
Query: 428 TPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLL 478
TPL+LAA +IV +LL++GA V+A+ + +T ++ +GN D+A +L
Sbjct: 103 TPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLAEIL 153
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 72/123 (58%)
Query: 285 KTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFM 344
+ L+ AD NA G TPLH+A ++VE+LL+ GA + A +G TPLH+A+ +
Sbjct: 19 RILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASL 78
Query: 345 GCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPL 404
G + I LL+ GA + G TPL+LAA +IV +LL++GA V+A+ + +T
Sbjct: 79 GHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAF 138
Query: 405 HVA 407
++
Sbjct: 139 DIS 141
Score = 83.6 bits (205), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 81/148 (54%)
Query: 99 LYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKT 158
L AA+ D VR L++ G + + TPLH+A G + +VE+L+ GA++ A
Sbjct: 6 LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVD 65
Query: 159 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGA 218
+G TPLH AA GH ++++L++ GA + +K G+ PL++A+ H VL+ HGA
Sbjct: 66 TNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGA 125
Query: 219 GVDEITVDYLTALHVASHCGHVRVAKTL 246
V+ TA ++ G+ +A+ L
Sbjct: 126 DVNAQDKFGKTAFDISIDIGNEDLAEIL 153
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 70/121 (57%)
Query: 681 SAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAG 740
+A+ G D +L+ +GA + G TPLH+ A + + + + NGA+++ V G
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNG 68
Query: 741 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 800
TPLH+A+ G L +V L++ GA+VNA G TPL+ A+ G + I+++LL GA N
Sbjct: 69 TTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVN 128
Query: 801 A 801
A
Sbjct: 129 A 129
Score = 79.3 bits (194), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 72/134 (53%)
Query: 626 LLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEG 685
+L+ GA +A G TPLH+AA ++I LL A NA G TPLHL+A G
Sbjct: 20 ILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLG 79
Query: 686 HTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLH 745
H ++ +L+++GA V+ + G+TPL+L A + + + + +GA+++ K G T
Sbjct: 80 HLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFD 139
Query: 746 IASHFGQLNMVRYL 759
I+ G ++ L
Sbjct: 140 ISIDIGNEDLAEIL 153
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 73/134 (54%)
Query: 135 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNG 194
A + G+ V +L++ GA+ A G TPLH AA GH ++++L+ GA + + NG
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNG 68
Query: 195 LAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPN 254
PLH+A+ H VL+ +GA V+ +T L++A++ GH+ + + LL AD N
Sbjct: 69 TTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVN 128
Query: 255 ARALNGFTPLHIAC 268
A+ G T I+
Sbjct: 129 AQDKFGKTAFDISI 142
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 63/110 (57%)
Query: 71 ATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNIT 130
A G E+ ++L+ NGA +N NG TPL++AA H +V LL G + IT
Sbjct: 44 AVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGIT 103
Query: 131 PLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 180
PL++A WG + +VE+L+ GA++ A+ + G T + G++++ +IL
Sbjct: 104 PLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLAEIL 153
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 100 bits (248), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 80/141 (56%)
Query: 553 SQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPL 612
Q IL +GA + AT G TPLHLAA YG ++I ++LL+ A V++ G TPL
Sbjct: 25 GQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPL 84
Query: 613 HVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESK 672
H+A+ H + +LL GA +AV G TPLH+AA ++I LL++ A NA+ K
Sbjct: 85 HLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDK 144
Query: 673 AGFTPLHLSAQEGHTDMSSLL 693
G T +S G+ D++ +L
Sbjct: 145 FGKTAFDISIDNGNEDLAEIL 165
Score = 99.8 bits (247), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 78/124 (62%)
Query: 433 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDG 492
AARA Q D VRIL+ NGA V+A TPLH+A+ G+ +I +LL+HGA V+A G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXG 80
Query: 493 YTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVD 552
T LH++A G E+ +L + GA + A G TPLHLAA G ++I ++LL+ A V+
Sbjct: 81 STPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN 140
Query: 553 SQGK 556
+Q K
Sbjct: 141 AQDK 144
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 86/166 (51%), Gaps = 17/166 (10%)
Query: 499 SAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVA 558
+A+ GQD+ IL +GA + AT G TPLHLAA YG ++I ++LL+
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKH----------- 69
Query: 559 SILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHY 618
GA + A G TPLHLAA G ++I ++LL+ A V++ G TPLH+A+
Sbjct: 70 ------GADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIM 123
Query: 619 DHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYN 664
H + +LL GA +A K G T I+ D+A L + N
Sbjct: 124 GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 96.7 bits (239), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 89/171 (52%), Gaps = 26/171 (15%)
Query: 374 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLA 433
AARA Q D VRIL+ NGA V+A T G TPLHLA
Sbjct: 21 AARAGQDDEVRILMANGADVNA--------------------------TDASGLTPLHLA 54
Query: 434 ARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGY 493
A +IV +LL++GA V+A TPLH+A+ +G+ +I +LL+HGA V+A G
Sbjct: 55 ATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGD 114
Query: 494 TALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
T LH++A G E+ +L + GA + A K G T ++ G +A++L
Sbjct: 115 TPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 88/171 (51%), Gaps = 26/171 (15%)
Query: 308 ACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRG 367
A + + V +L+ GA + AT SGLTPLH+A+ G + I LL+ GA + + G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXG 80
Query: 368 ETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGE 427
TPLHLAA +IV +LL++GA V+A G+
Sbjct: 81 STPLHLAALIGHLEIVEVLLKHGADVNA--------------------------VDTWGD 114
Query: 428 TPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLL 478
TPLHLAA +IV +LL++GA V+A+ + +T ++ GN D+A +L
Sbjct: 115 TPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 74/123 (60%)
Query: 285 KTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFM 344
+ L+ AD NA +G TPLH+A ++VE+LLK+GA + A G TPLH+A+ +
Sbjct: 31 RILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALI 90
Query: 345 GCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPL 404
G + I LL+ GA + G+TPLHLAA +IV +LL++GA V+A+ + +T
Sbjct: 91 GHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAF 150
Query: 405 HVA 407
++
Sbjct: 151 DIS 153
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 82/144 (56%)
Query: 582 AAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNG 641
AA+ G+ ++L+ A V++ +G+TPLH+A+ Y H + +LL GA +A+ G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXG 80
Query: 642 YTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVS 701
TPLH+AA ++I LL++ A NA G TPLHL+A GH ++ +L++HGA V+
Sbjct: 81 STPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN 140
Query: 702 HQAKNGLTPLHLCAQEDKVNVATI 725
Q K G T + ++A I
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEI 164
Score = 90.5 bits (223), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 76/138 (55%)
Query: 648 AAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNG 707
AA+ Q D L+ A NA +G TPLHL+A GH ++ +L++HGA V+ G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXG 80
Query: 708 LTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVN 767
TPLHL A + + + + +GA+++ V G TPLH+A+ G L +V L+++GA+VN
Sbjct: 81 STPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN 140
Query: 768 ATTNLGYTPLHQASQQGR 785
A G T + G
Sbjct: 141 AQDKFGKTAFDISIDNGN 158
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 80/139 (57%), Gaps = 1/139 (0%)
Query: 681 SAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAG 740
+A+ G D +L+ +GA V+ +GLTPLHL A + + + + +GA+++ + G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXG 80
Query: 741 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 800
TPLH+A+ G L +V L+++GA+VNA G TPLH A+ G + I+++LL GA N
Sbjct: 81 STPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN 140
Query: 801 ATTNLFCCA-TILVKNGAE 818
A A I + NG E
Sbjct: 141 AQDKFGKTAFDISIDNGNE 159
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 8/153 (5%)
Query: 234 ASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKAD 293
A+ G + L+ AD NA +G TPLH+A H+ + + LL AD
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAAT--------YGHLEIVEVLLKHGAD 72
Query: 294 PNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFL 353
NA + G TPLH+A ++VE+LLK+GA + A G TPLH+A+ MG + I L
Sbjct: 73 VNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVL 132
Query: 354 LQAGAAPDTATVRGETPLHLAARANQTDIVRIL 386
L+ GA + G+T ++ D+ IL
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 79/155 (50%), Gaps = 8/155 (5%)
Query: 168 AARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDY 227
AAR+G D+ + IL+ GA + + +GL PLH+A+ H VL+ HGA V+ I +
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXG 80
Query: 228 LTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTL 287
T LH+A+ GH+ + + LL AD NA G TPLH+A H+ + + L
Sbjct: 81 STPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAI--------MGHLEIVEVL 132
Query: 288 LDRKADPNARALNGFTPLHIACKKNRYKVVELLLK 322
L AD NA+ G T I+ + E+L K
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 82.8 bits (203), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 77/141 (54%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
GQ++ +IL+ NGA +N +G TPL++AA H +V LL G + TPL
Sbjct: 25 GQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPL 84
Query: 133 HVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTK 192
H+A G + +VE+L+ GA++ A G TPLH AA GH ++++L++ GA + ++ K
Sbjct: 85 HLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDK 144
Query: 193 NGLAPLHMASQGDHEAATRVL 213
G ++ +E +L
Sbjct: 145 FGKTAFDISIDNGNEDLAEIL 165
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 74/134 (55%)
Query: 135 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNG 194
A + G+ V +L++ GA++ A GLTPLH AA GH ++++L++ GA + + G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXG 80
Query: 195 LAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPN 254
PLH+A+ H VL+ HGA V+ + T LH+A+ GH+ + + LL AD N
Sbjct: 81 STPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN 140
Query: 255 ARALNGFTPLHIAC 268
A+ G T I+
Sbjct: 141 AQDKFGKTAFDISI 154
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 73/134 (54%)
Query: 626 LLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEG 685
+L+ GA +A +G TPLH+AA ++I LL++ A NA G TPLHL+A G
Sbjct: 32 ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIG 91
Query: 686 HTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLH 745
H ++ +L++HGA V+ G TPLHL A + + + + +GA+++ K G T
Sbjct: 92 HLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFD 151
Query: 746 IASHFGQLNMVRYL 759
I+ G ++ L
Sbjct: 152 ISIDNGNEDLAEIL 165
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 69/123 (56%)
Query: 99 LYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKT 158
L AA+ D VR L++ G + +TPLH+A +G + +VE+L+ GA++ A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 159 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGA 218
G TPLH AA GH ++++L++ GA + + G PLH+A+ H VL+ HGA
Sbjct: 78 IXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA 137
Query: 219 GVD 221
V+
Sbjct: 138 DVN 140
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 99.4 bits (246), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 80/141 (56%)
Query: 553 SQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPL 612
Q IL +GA + AT G TPLHLAA YG ++I ++LL+ A V++ G TPL
Sbjct: 25 GQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPL 84
Query: 613 HVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESK 672
H+A+ H + +LL GA +AV G TPLH+AA ++I LL++ A NA+ K
Sbjct: 85 HLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDK 144
Query: 673 AGFTPLHLSAQEGHTDMSSLL 693
G T +S G+ D++ +L
Sbjct: 145 FGKTAFDISIDNGNEDLAEIL 165
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 78/124 (62%)
Query: 433 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDG 492
AARA Q D VRIL+ NGA V+A TPLH+A+ G+ +I +LL+HGA V+A G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMG 80
Query: 493 YTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVD 552
T LH++A G E+ +L + GA + A G TPLHLAA G ++I ++LL+ A V+
Sbjct: 81 STPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN 140
Query: 553 SQGK 556
+Q K
Sbjct: 141 AQDK 144
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 86/166 (51%), Gaps = 17/166 (10%)
Query: 499 SAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVA 558
+A+ GQD+ IL +GA + AT G TPLHLAA YG ++I ++LL+
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKH----------- 69
Query: 559 SILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHY 618
GA + A G TPLHLAA G ++I ++LL+ A V++ G TPLH+A+
Sbjct: 70 ------GADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIM 123
Query: 619 DHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYN 664
H + +LL GA +A K G T I+ D+A L + N
Sbjct: 124 GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 95.9 bits (237), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 89/171 (52%), Gaps = 26/171 (15%)
Query: 374 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLA 433
AARA Q D VRIL+ NGA V+A T G TPLHLA
Sbjct: 21 AARAGQDDEVRILMANGADVNA--------------------------TDASGLTPLHLA 54
Query: 434 ARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGY 493
A +IV +LL++GA V+A TPLH+A+ +G+ +I +LL+HGA V+A G
Sbjct: 55 ATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGD 114
Query: 494 TALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
T LH++A G E+ +L + GA + A K G T ++ G +A++L
Sbjct: 115 TPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 88/171 (51%), Gaps = 26/171 (15%)
Query: 308 ACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRG 367
A + + V +L+ GA + AT SGLTPLH+A+ G + I LL+ GA + + G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMG 80
Query: 368 ETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGE 427
TPLHLAA +IV +LL++GA V+A G+
Sbjct: 81 STPLHLAALIGHLEIVEVLLKHGADVNA--------------------------VDTWGD 114
Query: 428 TPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLL 478
TPLHLAA +IV +LL++GA V+A+ + +T ++ GN D+A +L
Sbjct: 115 TPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 74/123 (60%)
Query: 285 KTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFM 344
+ L+ AD NA +G TPLH+A ++VE+LLK+GA + A G TPLH+A+ +
Sbjct: 31 RILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALI 90
Query: 345 GCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPL 404
G + I LL+ GA + G+TPLHLAA +IV +LL++GA V+A+ + +T
Sbjct: 91 GHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAF 150
Query: 405 HVA 407
++
Sbjct: 151 DIS 153
Score = 90.1 bits (222), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 82/144 (56%)
Query: 582 AAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNG 641
AA+ G+ ++L+ A V++ +G+TPLH+A+ Y H + +LL GA +A+ G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMG 80
Query: 642 YTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVS 701
TPLH+AA ++I LL++ A NA G TPLHL+A GH ++ +L++HGA V+
Sbjct: 81 STPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN 140
Query: 702 HQAKNGLTPLHLCAQEDKVNVATI 725
Q K G T + ++A I
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEI 164
Score = 89.7 bits (221), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 76/138 (55%)
Query: 648 AAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNG 707
AA+ Q D L+ A NA +G TPLHL+A GH ++ +L++HGA V+ G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMG 80
Query: 708 LTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVN 767
TPLHL A + + + + +GA+++ V G TPLH+A+ G L +V L+++GA+VN
Sbjct: 81 STPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN 140
Query: 768 ATTNLGYTPLHQASQQGR 785
A G T + G
Sbjct: 141 AQDKFGKTAFDISIDNGN 158
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 80/139 (57%), Gaps = 1/139 (0%)
Query: 681 SAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAG 740
+A+ G D +L+ +GA V+ +GLTPLHL A + + + + +GA+++ + G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMG 80
Query: 741 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 800
TPLH+A+ G L +V L+++GA+VNA G TPLH A+ G + I+++LL GA N
Sbjct: 81 STPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN 140
Query: 801 ATTNLFCCA-TILVKNGAE 818
A A I + NG E
Sbjct: 141 AQDKFGKTAFDISIDNGNE 159
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 8/153 (5%)
Query: 234 ASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKAD 293
A+ G + L+ AD NA +G TPLH+A H+ + + LL AD
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAAT--------YGHLEIVEVLLKHGAD 72
Query: 294 PNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFL 353
NA + G TPLH+A ++VE+LLK+GA + A G TPLH+A+ MG + I L
Sbjct: 73 VNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVL 132
Query: 354 LQAGAAPDTATVRGETPLHLAARANQTDIVRIL 386
L+ GA + G+T ++ D+ IL
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 79/155 (50%), Gaps = 8/155 (5%)
Query: 168 AARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDY 227
AAR+G D+ + IL+ GA + + +GL PLH+A+ H VL+ HGA V+ I +
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMG 80
Query: 228 LTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTL 287
T LH+A+ GH+ + + LL AD NA G TPLH+A H+ + + L
Sbjct: 81 STPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAI--------MGHLEIVEVL 132
Query: 288 LDRKADPNARALNGFTPLHIACKKNRYKVVELLLK 322
L AD NA+ G T I+ + E+L K
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 77/141 (54%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
GQ++ +IL+ NGA +N +G TPL++AA H +V LL G + TPL
Sbjct: 25 GQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPL 84
Query: 133 HVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTK 192
H+A G + +VE+L+ GA++ A G TPLH AA GH ++++L++ GA + ++ K
Sbjct: 85 HLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDK 144
Query: 193 NGLAPLHMASQGDHEAATRVL 213
G ++ +E +L
Sbjct: 145 FGKTAFDISIDNGNEDLAEIL 165
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 73/134 (54%)
Query: 626 LLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEG 685
+L+ GA +A +G TPLH+AA ++I LL++ A NA G TPLHL+A G
Sbjct: 32 ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIG 91
Query: 686 HTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLH 745
H ++ +L++HGA V+ G TPLHL A + + + + +GA+++ K G T
Sbjct: 92 HLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFD 151
Query: 746 IASHFGQLNMVRYL 759
I+ G ++ L
Sbjct: 152 ISIDNGNEDLAEIL 165
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 74/134 (55%)
Query: 135 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNG 194
A + G+ V +L++ GA++ A GLTPLH AA GH ++++L++ GA + + G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMG 80
Query: 195 LAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPN 254
PLH+A+ H VL+ HGA V+ + T LH+A+ GH+ + + LL AD N
Sbjct: 81 STPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN 140
Query: 255 ARALNGFTPLHIAC 268
A+ G T I+
Sbjct: 141 AQDKFGKTAFDISI 154
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 69/123 (56%)
Query: 99 LYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKT 158
L AA+ D VR L++ G + +TPLH+A +G + +VE+L+ GA++ A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 159 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGA 218
G TPLH AA GH ++++L++ GA + + G PLH+A+ H VL+ HGA
Sbjct: 78 IMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA 137
Query: 219 GVD 221
V+
Sbjct: 138 DVN 140
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 80/124 (64%)
Query: 433 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDG 492
AARA + D VRIL+ NGA V+A TPLH+A+ G+ +I +LL++GA V+A G
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG 80
Query: 493 YTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVD 552
T L ++A G E+ +L ++GA + A +G TPLHLAA +G ++I ++LL+ A V+
Sbjct: 81 MTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN 140
Query: 553 SQGK 556
+Q K
Sbjct: 141 AQDK 144
Score = 96.7 bits (239), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 87/166 (52%), Gaps = 17/166 (10%)
Query: 499 SAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVA 558
+A+ G+D+ IL +GA + A G+TPLHLAA G ++I ++LL+
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLK------------ 68
Query: 559 SILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHY 618
+GA + A G TPL LAA +G ++I ++LL+ A V++ G TPLH+A+ +
Sbjct: 69 -----NGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMF 123
Query: 619 DHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYN 664
H + +LL GA +A K G T I+ D+A L + N
Sbjct: 124 GHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 95.9 bits (237), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 92/171 (53%), Gaps = 26/171 (15%)
Query: 374 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLA 433
AARA + D VRIL+ NGA V+A ED + G TPLHLA
Sbjct: 21 AARAGRDDEVRILMANGADVNA---EDAS-----------------------GWTPLHLA 54
Query: 434 ARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGY 493
A +IV +LL+NGA V+A TPL +A+ G+ +I +LL++GA V+A +G+
Sbjct: 55 AFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGH 114
Query: 494 TALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
T LH++A G E+ +L ++GA + A K G T ++ G +A++L
Sbjct: 115 TPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 95.9 bits (237), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 82/139 (58%), Gaps = 1/139 (0%)
Query: 681 SAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAG 740
+A+ G D +L+ +GA V+ + +G TPLHL A + + + + NGA+++ V AG
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG 80
Query: 741 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 800
TPL +A+ FG L +V L++NGA+VNA G+TPLH A+ G + I+++LL GA N
Sbjct: 81 MTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN 140
Query: 801 ATTNLFCCA-TILVKNGAE 818
A A I + NG E
Sbjct: 141 AQDKFGKTAFDISIDNGNE 159
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 74/123 (60%)
Query: 285 KTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFM 344
+ L+ AD NA +G+TPLH+A ++VE+LLK GA + A +G+TPL +A+
Sbjct: 31 RILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALF 90
Query: 345 GCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPL 404
G + I LL+ GA + + G TPLHLAA +IV +LL+NGA V+A+ + +T
Sbjct: 91 GHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAF 150
Query: 405 HVA 407
++
Sbjct: 151 DIS 153
Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 78/137 (56%)
Query: 648 AAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNG 707
AA+ + D L+ A NAE +G+TPLHL+A GH ++ +L+++GA V+ G
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG 80
Query: 708 LTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVN 767
+TPL L A + + + + NGA+++ G TPLH+A+ FG L +V L++NGA+VN
Sbjct: 81 MTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN 140
Query: 768 ATTNLGYTPLHQASQQG 784
A G T + G
Sbjct: 141 AQDKFGKTAFDISIDNG 157
Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 78/134 (58%)
Query: 560 ILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYD 619
IL +GA + A G+TPLHLAA G ++I ++LL+ A V++ G+TPL +A+ +
Sbjct: 32 ILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFG 91
Query: 620 HQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLH 679
H + +LL GA +A G+TPLH+AA ++I LL+ A NA+ K G T
Sbjct: 92 HLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFD 151
Query: 680 LSAQEGHTDMSSLL 693
+S G+ D++ +L
Sbjct: 152 ISIDNGNEDLAEIL 165
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 84/171 (49%), Gaps = 26/171 (15%)
Query: 308 ACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRG 367
A + R V +L+ GA + A SG TPLH+A+F G + I LL+ GA + G
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG 80
Query: 368 ETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGE 427
TPL LAA +IV +LL+NGA V+A E T
Sbjct: 81 MTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHT------------------------- 115
Query: 428 TPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLL 478
PLHLAA +IV +LL+NGA V+A+ + +T ++ GN D+A +L
Sbjct: 116 -PLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 81/141 (57%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
G+++ +IL+ NGA +N + +G+TPL++AA H +V LL G + +TPL
Sbjct: 25 GRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPL 84
Query: 133 HVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTK 192
+A +G + +VE+L+ GA++ A +G TPLH AA GH ++++L++ GA + ++ K
Sbjct: 85 RLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDK 144
Query: 193 NGLAPLHMASQGDHEAATRVL 213
G ++ +E +L
Sbjct: 145 FGKTAFDISIDNGNEDLAEIL 165
Score = 85.9 bits (211), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 79/144 (54%)
Query: 582 AAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNG 641
AA+ GR ++L+ A V+++ +G TPLH+A+ H + +LL GA +AV G
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG 80
Query: 642 YTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVS 701
TPL +AA ++I LL+ A NA G TPLHL+A GH ++ +L+++GA V+
Sbjct: 81 MTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN 140
Query: 702 HQAKNGLTPLHLCAQEDKVNVATI 725
Q K G T + ++A I
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEI 164
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 73/134 (54%)
Query: 626 LLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEG 685
+L+ GA +A +G+TPLH+AA ++I LL+ A NA AG TPL L+A G
Sbjct: 32 ILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFG 91
Query: 686 HTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLH 745
H ++ +L+++GA V+ G TPLHL A + + + + NGA+++ K G T
Sbjct: 92 HLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFD 151
Query: 746 IASHFGQLNMVRYL 759
I+ G ++ L
Sbjct: 152 ISIDNGNEDLAEIL 165
Score = 79.3 bits (194), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 79/155 (50%), Gaps = 8/155 (5%)
Query: 168 AARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDY 227
AAR+G D+ + IL+ GA + ++ +G PLH+A+ H VL+ +GA V+ +
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG 80
Query: 228 LTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTL 287
+T L +A+ GH+ + + LL AD NA + G TPLH+A H+ + + L
Sbjct: 81 MTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAM--------FGHLEIVEVL 132
Query: 288 LDRKADPNARALNGFTPLHIACKKNRYKVVELLLK 322
L AD NA+ G T I+ + E+L K
Sbjct: 133 LKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 76/134 (56%)
Query: 135 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNG 194
A + G+ V +L++ GA++ A+ G TPLH AA +GH ++++L++ GA + + G
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG 80
Query: 195 LAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPN 254
+ PL +A+ H VL+ +GA V+ ++ T LH+A+ GH+ + + LL AD N
Sbjct: 81 MTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN 140
Query: 255 ARALNGFTPLHIAC 268
A+ G T I+
Sbjct: 141 AQDKFGKTAFDISI 154
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 74/153 (48%), Gaps = 8/153 (5%)
Query: 234 ASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKAD 293
A+ G + L+ AD NA +G+TPLH+A + H+ + + LL AD
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLA--------AFNGHLEIVEVLLKNGAD 72
Query: 294 PNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFL 353
NA G TPL +A ++VE+LLK GA + A G TPLH+A+ G + I L
Sbjct: 73 VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVL 132
Query: 354 LQAGAAPDTATVRGETPLHLAARANQTDIVRIL 386
L+ GA + G+T ++ D+ IL
Sbjct: 133 LKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 77/148 (52%)
Query: 99 LYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKT 158
L AA+ D VR L++ G + TPLH+A G + +VE+L+ GA++ A
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD 77
Query: 159 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGA 218
G+TPL AA GH ++++L++ GA + + G PLH+A+ H VL+ +GA
Sbjct: 78 HAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA 137
Query: 219 GVDEITVDYLTALHVASHCGHVRVAKTL 246
V+ TA ++ G+ +A+ L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 92.4 bits (228), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 76/138 (55%), Gaps = 26/138 (18%)
Query: 374 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLA 433
AARA Q D VRIL+ NGA V+A R +G TPLHLA
Sbjct: 21 AARAGQDDEVRILMANGADVNANDR--------------------------KGNTPLHLA 54
Query: 434 ARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGY 493
A + +IV +LL++GA V+A + TPLH+A+ G+ +I +LL+HGA V+A K G
Sbjct: 55 ADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGK 114
Query: 494 TALHISAKEGQDEVASIL 511
TA IS G +++A IL
Sbjct: 115 TAFDISIDNGNEDLAEIL 132
Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 68/112 (60%)
Query: 433 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDG 492
AARA Q D VRIL+ NGA V+A R+ TPLH+A+ + +I +LL+HGA V+A DG
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDG 80
Query: 493 YTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
T LH++A G E+ +L + GA + A K G T ++ G +A++L
Sbjct: 81 STPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 72/129 (55%), Gaps = 17/129 (13%)
Query: 499 SAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVA 558
+A+ GQD+ IL +GA + A +KG TPLHLAA Y ++I ++LL+
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLK------------ 68
Query: 559 SILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHY 618
GA + A G TPLHLAA +G ++I ++LL+ A V++Q K G T ++
Sbjct: 69 -----HGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDN 123
Query: 619 DHQNVALLL 627
++++A +L
Sbjct: 124 GNEDLAEIL 132
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 61/111 (54%)
Query: 554 QGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLH 613
Q IL +GA + A +KG TPLHLAA Y ++I ++LL+ A V++ +G TPLH
Sbjct: 26 QDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLH 85
Query: 614 VASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYN 664
+A+ + H + +LL GA +A K G T I+ D+A L + N
Sbjct: 86 LAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 65/112 (58%)
Query: 582 AAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNG 641
AA+ G+ ++L+ A V++ + G TPLH+A+ YDH + +LL GA +A +G
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDG 80
Query: 642 YTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLL 693
TPLH+AA ++I LL++ A NA+ K G T +S G+ D++ +L
Sbjct: 81 STPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 63/108 (58%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
GQ++ +IL+ NGA +N G TPL++AA +H +V LL G + TPL
Sbjct: 25 GQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPL 84
Query: 133 HVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 180
H+A +G + +VE+L+ GA++ A+ + G T + +G++++ +IL
Sbjct: 85 HLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 63/112 (56%)
Query: 681 SAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAG 740
+A+ G D +L+ +GA V+ + G TPLHL A D + + + + +GA+++ G
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDG 80
Query: 741 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLL 792
TPLH+A+ FG L +V L+++GA+VNA G T + G + ++L
Sbjct: 81 STPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 62/106 (58%), Gaps = 4/106 (3%)
Query: 714 CAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 773
Q+D+V I M NGA+++ + G TPLH+A+ + L +V L+++GA+VNA N G
Sbjct: 24 AGQDDEV---RILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDG 80
Query: 774 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNLFCCA-TILVKNGAE 818
TPLH A+ G + I+++LL GA NA A I + NG E
Sbjct: 81 STPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 126
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 57/100 (57%)
Query: 626 LLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEG 685
+L+ GA +A + G TPLH+AA + ++I LL++ A NA G TPLHL+A G
Sbjct: 32 ILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFG 91
Query: 686 HTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATI 725
H ++ +L++HGA V+ Q K G T + ++A I
Sbjct: 92 HLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEI 131
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 55/93 (59%)
Query: 466 ASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKG 525
A+R G D +L+ +GA V+A + G T LH++A E+ +L + GA + A G
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDG 80
Query: 526 FTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVA 558
TPLHLAA +G ++I ++LL+ A V++Q K
Sbjct: 81 STPLHLAALFGHLEIVEVLLKHGADVNAQDKFG 113
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 55/104 (52%)
Query: 285 KTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFM 344
+ L+ AD NA G TPLH+A + ++VE+LLK+GA + A G TPLH+A+
Sbjct: 31 RILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALF 90
Query: 345 GCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLR 388
G + I LL+ GA + G+T ++ D+ IL +
Sbjct: 91 GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 61/115 (53%)
Query: 99 LYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKT 158
L AA+ D VR L++ G + TPLH+A + + +VE+L+ GA++ A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD 77
Query: 159 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVL 213
DG TPLH AA GH ++++L++ GA + ++ K G ++ +E +L
Sbjct: 78 NDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%)
Query: 168 AARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDY 227
AAR+G D+ + IL+ GA + + + G PLH+A+ DH VL+ HGA V+ D
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDG 80
Query: 228 LTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIAC 268
T LH+A+ GH+ + + LL AD NA+ G T I+
Sbjct: 81 STPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 121
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 63/127 (49%), Gaps = 26/127 (20%)
Query: 352 FLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLR 411
L+ GA + +G TPLHLAA + +IV +LL++GA V+A +
Sbjct: 32 ILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDND------------ 79
Query: 412 RFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGN 471
G TPLHLAA +IV +LL++GA V+A+ + +T ++ GN
Sbjct: 80 --------------GSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 125
Query: 472 GDIASLL 478
D+A +L
Sbjct: 126 EDLAEIL 132
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 58/112 (51%)
Query: 648 AAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNG 707
AA+ Q D L+ A NA + G TPLHL+A H ++ +L++HGA V+ +G
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDG 80
Query: 708 LTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYL 759
TPLHL A + + + + +GA+++ K G T I+ G ++ L
Sbjct: 81 STPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 61/112 (54%)
Query: 135 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNG 194
A + G+ V +L++ GA++ A R G TPLH AA H ++++L++ GA + + +G
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDG 80
Query: 195 LAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTL 246
PLH+A+ H VL+ HGA V+ TA ++ G+ +A+ L
Sbjct: 81 STPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 59/120 (49%), Gaps = 8/120 (6%)
Query: 234 ASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKAD 293
A+ G + L+ AD NA G TPLH+A +H+ + + LL AD
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAAD--------YDHLEIVEVLLKHGAD 72
Query: 294 PNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFL 353
NA +G TPLH+A ++VE+LLK+GA + A + G T ++ G ++A L
Sbjct: 73 VNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 54/100 (54%)
Query: 308 ACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRG 367
A + + V +L+ GA + A G TPLH+A+ + I LL+ GA + G
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDG 80
Query: 368 ETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVA 407
TPLHLAA +IV +LL++GA V+A+ + +T ++
Sbjct: 81 STPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 8/122 (6%)
Query: 201 ASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNG 260
A++ + R+L+ +GA V+ T LH+A+ H+ + + LL AD NA +G
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDG 80
Query: 261 FTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELL 320
TPLH+A H+ + + LL AD NA+ G T I+ + E+L
Sbjct: 81 STPLHLAAL--------FGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Query: 321 LK 322
K
Sbjct: 133 QK 134
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 13/92 (14%)
Query: 747 ASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTN-- 804
A+ GQ + VR L+ NGA+VNA G TPLH A+ + I+++LL GA NA N
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDG 80
Query: 805 --------LFC---CATILVKNGAEIDPVTKL 825
LF +L+K+GA+++ K
Sbjct: 81 STPLHLAALFGHLEIVEVLLKHGADVNAQDKF 112
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/279 (29%), Positives = 131/279 (46%), Gaps = 17/279 (6%)
Query: 431 HLAARANQ---TDIVRILLRNGASVDARARED-QTPLHVASRLGNGDIASLLLQHGASVD 486
HL +A Q D+V+ LL GA+V+ + E TPLH A ++ DI LLL+HGA
Sbjct: 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV 66
Query: 487 APTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQ 546
K+G T ++A G ++ + GA + GFT AA YG++K + L +
Sbjct: 67 LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK 126
Query: 547 KDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDA----PVD 602
+ A V+ + K K G T L AA+ G +++ ++LL + D
Sbjct: 127 RGANVNLRRKTKE-------DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACD 179
Query: 603 SQGKNGVT-PLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLL 661
+ G+N + L + D + + LLLD GA + + G TPL +A +K + + LL
Sbjct: 180 NMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL 239
Query: 662 EYN-AKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGAT 699
E + N G T L L+ + ++ LL + GA+
Sbjct: 240 EQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS 278
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 97/197 (49%), Gaps = 15/197 (7%)
Query: 648 AAKKNQMDIATTLLEYNAKPN-AESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKN 706
A + +D+ LLE A N E + G+TPLH + Q D+ LL+ HGA + KN
Sbjct: 12 AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKN 71
Query: 707 GLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANV 766
G TP L A V + + + GA+++ GFT A+ +G++ +++L + GANV
Sbjct: 72 GATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV 131
Query: 767 NATTNL----------GYTPLHQASQQGRVLIIDLLLGA-GAQPNATTNLFCCATI---L 812
N G T L A+++G V ++ +LL GA NA N+ A I L
Sbjct: 132 NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALL 191
Query: 813 VKNGAEIDPVTKLSDEH 829
+ ++++ +T L +H
Sbjct: 192 SSDDSDVEAITHLLLDH 208
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 79/261 (30%), Positives = 121/261 (46%), Gaps = 28/261 (10%)
Query: 301 GFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAP 360
G+TPLH A + +R +VELLL++GA ++G TP +A+ G + + L GA
Sbjct: 39 GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADV 98
Query: 361 DTATVRGETPLHLAARANQTDIVRILLRNGASVDAR--AREDQTPLHVASRLRRFSSASQ 418
+ G T AA + ++ L + GA+V+ R +EDQ RLR+
Sbjct: 99 NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQ------ERLRK------ 146
Query: 419 SALTRVRGETPLHLAARANQTDIVRILLRN-GASVDARAREDQTPLHVASRLGNGD---- 473
G T L AA ++++ILL GA V+A + L + + L + D
Sbjct: 147 ------GGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL-IHALLSSDDSDVE 199
Query: 474 -IASLLLQHGASVDAPTKDGYTALHISA-KEGQDEVASILTESGASITATTKKGFTPLHL 531
I LLL HGA V+ + G T L ++ K+ V +L + I T G T L L
Sbjct: 200 AITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLL 259
Query: 532 AAKYGRMKIAQMLLQKDAPVD 552
A + KIA++L ++ A D
Sbjct: 260 AVELKLKKIAELLCKRGASTD 280
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 87/294 (29%), Positives = 129/294 (43%), Gaps = 32/294 (10%)
Query: 76 EVAKILVDNGATINVQSLNG-FTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHV 134
++ + L++ GA +N Q G +TPL+ A Q + + +V LL G + L ++ TP +
Sbjct: 19 DLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLL 78
Query: 135 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNG 194
A G V +++L +SKGA++ G T AA G + L ++GA + + K
Sbjct: 79 AAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRK-- 136
Query: 195 LAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRK-ADP 253
++ D E + GA TAL A+ GHV V K LLD AD
Sbjct: 137 -------TKEDQERLRK----GGA----------TALMDAAEKGHVEVLKILLDEMGADV 175
Query: 254 NARALNGFTPL-HIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKN 312
NA G L H + H+ LLD AD N R G TPL +A +K
Sbjct: 176 NACDNMGRNALIHALLSSDDSDVEAITHL-----LLDHGADVNVRGERGKTPLILAVEKK 230
Query: 313 RYKVVELLLKYG-ASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATV 365
+V+ LL+ I T G T L +A + IA L + GA+ D +
Sbjct: 231 HLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL 284
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 129/297 (43%), Gaps = 60/297 (20%)
Query: 372 HLAARANQ---TDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGET 428
HL +A Q D+V+ LL GA+V+ + E G T
Sbjct: 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEG-------------------------GWT 41
Query: 429 PLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAP 488
PLH A + ++ DIV +LLR+GA R + TP +A+ G+ + L L GA V+
Sbjct: 42 PLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNEC 101
Query: 489 TKDGYTALHISAKEGQDEVASILTESGASITATTKK----------GFTPLHLAAKYGRM 538
G+TA +A G+ + L + GA++ K G T L AA+ G +
Sbjct: 102 DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV 161
Query: 539 KIAQMLLQKDA----PVDSQGKVASI-----------------LTESGASITATTKKGFT 577
++ ++LL + D+ G+ A I L + GA + ++G T
Sbjct: 162 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKT 221
Query: 578 PLHLAAKYGRMKIAQMLLQKD-APVDSQGKNGVTPLHVASHYDHQNVALLLLDRGAS 633
PL LA + + + Q LL+++ ++ +G T L +A + +A LL RGAS
Sbjct: 222 PLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS 278
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 84/311 (27%), Positives = 128/311 (41%), Gaps = 58/311 (18%)
Query: 308 ACKKNRYKVVELLLKYGASI-AATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVR 366
A + +V+ LL+ GA++ E G TPLH A M +I LL+ GA P
Sbjct: 12 AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKN 71
Query: 367 GETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRG 426
G TP LAA A ++++ L GA V+ G
Sbjct: 72 GATPFLLAAIAGSVKLLKLFLSKGADVNE--------------------------CDFYG 105
Query: 427 ETPLHLAARANQTDIVRILLRNGASVDAR--AREDQ--------TPLHVASRLGNGDIAS 476
T AA + ++ L + GA+V+ R +EDQ T L A+ G+ ++
Sbjct: 106 FTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLK 165
Query: 477 LLL-QHGASVDAPTKDGYTAL-HISAKEGQDEVASI---LTESGASITATTKKGFTPLHL 531
+LL + GA V+A G AL H +V +I L + GA + ++G TPL L
Sbjct: 166 ILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLIL 225
Query: 532 AAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIA 591
A + + + Q LL+++ I T G T L LA + KIA
Sbjct: 226 AVEKKHLGLVQRLLEQEH----------------IEINDTDSDGKTALLLAVELKLKKIA 269
Query: 592 QMLLQKDAPVD 602
++L ++ A D
Sbjct: 270 ELLCKRGASTD 280
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 114/264 (43%), Gaps = 47/264 (17%)
Query: 74 QEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLH 133
+E++ ++L+ +GA ++ NG TP +AA +++ LSKG + + T
Sbjct: 51 REDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFM 110
Query: 134 VACKWGKVAMVELLISKGANI----------EAKTRDGLTPLHCAARSGHDNVIDILIEK 183
A +GKV ++ L +GAN+ E + G T L AA GH V+ IL+++
Sbjct: 111 EAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE 170
Query: 184 GAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVA 243
A + N LI+ D+ V+ +T L
Sbjct: 171 MGADVNACDN--------------MGRNALIHALLSSDDSDVEAITHL------------ 204
Query: 244 KTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRK-ADPNARALNGF 302
LLD AD N R G TPL +A +K H+ + + LL+++ + N +G
Sbjct: 205 --LLDHGADVNVRGERGKTPLILAVEK--------KHLGLVQRLLEQEHIEINDTDSDGK 254
Query: 303 TPLHIACKKNRYKVVELLLKYGAS 326
T L +A + K+ ELL K GAS
Sbjct: 255 TALLLAVELKLKKIAELLCKRGAS 278
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 119/259 (45%), Gaps = 21/259 (8%)
Query: 561 LTESGASITATTKKG-FTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYD 619
L E GA++ ++G +TPLH A + R I ++LL+ A + KNG TP +A+
Sbjct: 24 LLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG 83
Query: 620 HQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESK------- 672
+ L L +GA + G+T AA ++ L + A N K
Sbjct: 84 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQER 143
Query: 673 ---AGFTPLHLSAQEGHTDMSSLLI-EHGATVS---HQAKNGLTPLHLCAQEDKVNVATI 725
G T L +A++GH ++ +L+ E GA V+ + +N L +H D +V I
Sbjct: 144 LRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL--IHALLSSDDSDVEAI 201
Query: 726 T---MFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENG-ANVNATTNLGYTPLHQAS 781
T + +GA+++ + G TPL +A L +V+ L+E +N T + G T L A
Sbjct: 202 THLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAV 261
Query: 782 QQGRVLIIDLLLGAGAQPN 800
+ I +LL GA +
Sbjct: 262 ELKLKKIAELLCKRGASTD 280
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 116/273 (42%), Gaps = 48/273 (17%)
Query: 260 GFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVEL 319
G+TPLH A + +R + + LL ADP R NG TP +A K+++L
Sbjct: 39 GWTPLHNAVQMSRED--------IVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKL 90
Query: 320 LLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGA--------APDTATVR--GET 369
L GA + G T A+ G + FL + GA D +R G T
Sbjct: 91 FLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGAT 150
Query: 370 PLHLAARANQTDIVRILLRN-GASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGET 428
L AA ++++ILL GA V+A + ++AL
Sbjct: 151 ALMDAAEKGHVEVLKILLDEMGADVNA-----------------CDNMGRNAL------- 186
Query: 429 PLHLAARANQTD---IVRILLRNGASVDARAREDQTPLHVASRLGN-GDIASLLLQHGAS 484
+H ++ +D I +LL +GA V+ R +TPL +A + G + LL Q
Sbjct: 187 -IHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE 245
Query: 485 VDAPTKDGYTALHISAKEGQDEVASILTESGAS 517
++ DG TAL ++ + ++A +L + GAS
Sbjct: 246 INDTDSDGKTALLLAVELKLKKIAELLCKRGAS 278
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 92/217 (42%), Gaps = 29/217 (13%)
Query: 590 IAQMLLQKDAPVDSQGKNG-VTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIA 648
+ Q LL+ A V+ Q + G TPLH A +++ LLL GA P KNG TP +A
Sbjct: 20 LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLA 79
Query: 649 AKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGL 708
A + + L A N GFT +A G L + GA V+ + K
Sbjct: 80 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKT-- 137
Query: 709 TPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLV-ENGANVN 767
+ED+ + + K G T L A+ G + +++ L+ E GA+VN
Sbjct: 138 -------KEDQ--------------ERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN 176
Query: 768 ATTNLGYTPLHQA---SQQGRV-LIIDLLLGAGAQPN 800
A N+G L A S V I LLL GA N
Sbjct: 177 ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN 213
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 111/217 (51%), Gaps = 1/217 (0%)
Query: 287 LLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGC 346
LL+R AD N ++G T LH AC + +V+ L++ GA+I G PLH A+ G
Sbjct: 59 LLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGY 118
Query: 347 MNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILL-RNGASVDARAREDQTPLH 405
++IA +L+ GA G+TPL +A ++++ + R G ++A +E++ +
Sbjct: 119 LDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML 178
Query: 406 VASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHV 465
+R S G T LH+AA T+++++L++ V+ + + TPLH
Sbjct: 179 RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHA 238
Query: 466 ASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKE 502
A+ G + +L+++ ++A K G TA ++ ++
Sbjct: 239 AAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADED 275
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 103/230 (44%), Gaps = 9/230 (3%)
Query: 308 ACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRG 367
AC + V LL+ GA I GLT LH A +++ FL++ GA + G
Sbjct: 47 ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEG 106
Query: 368 ETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGE 427
PLH AA DI L+ GA V A E TPL +A Q+ + R +
Sbjct: 107 WIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAM-EELLQNEVNRQGVD 165
Query: 428 TPLHLAARANQTDIV----RILLRNGASVDAR-AREDQTPLHVASRLGNGDIASLLLQHG 482
AAR + I+ R L +G D R A+ T LHVA+ G ++ LL+Q
Sbjct: 166 IE---AARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR 222
Query: 483 ASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLA 532
V+ DG+T LH +A G++E IL E+ + A K G T +A
Sbjct: 223 YDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVA 272
Score = 82.8 bits (203), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 115/246 (46%), Gaps = 14/246 (5%)
Query: 433 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDG 492
A + T+ V LL GA ++ + T LH A N D+ L+++GA+++ P +G
Sbjct: 47 ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEG 106
Query: 493 YTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQK---DA 549
+ LH +A G ++A L GA + A +G TPL +A + ++ Q + + D
Sbjct: 107 WIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDI 166
Query: 550 PVDSQGKVASILTESGASITAT-------TKKGFTPLHLAAKYGRMKIAQMLLQKDAPVD 602
+ + +L ++ + + K G T LH+AA G ++ ++L+Q V+
Sbjct: 167 EAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVN 226
Query: 603 SQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLE 662
+ +G TPLH A+H+ + +L++ AV K G T +A + DI L E
Sbjct: 227 IKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE----DILGYLEE 282
Query: 663 YNAKPN 668
K N
Sbjct: 283 LQKKQN 288
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 98/227 (43%), Gaps = 16/227 (7%)
Query: 561 LTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDH 620
L E GA I G T LH A + + + L++ A ++ G PLH A+ +
Sbjct: 59 LLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGY 118
Query: 621 QNVALLLLDRGASPHAVAKNGYTPLHIAAKKN-----QMDIATTLLEYNAKPNAESKAGF 675
++A L+ +GA AV G TPL IA ++ Q ++ ++ A E +
Sbjct: 119 LDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML 178
Query: 676 TPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDP 735
GH + V H AK+G T LH+ A + V + + +++
Sbjct: 179 RDARQWLNSGHIN----------DVRH-AKSGGTALHVAAAKGYTEVLKLLIQARYDVNI 227
Query: 736 VTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQ 782
G+TPLH A+H+G+ R LVEN ++ A +G T A +
Sbjct: 228 KDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE 274
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 114/271 (42%), Gaps = 28/271 (10%)
Query: 491 DGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAP 550
DG L + +EV +L E GA I G T LH A
Sbjct: 40 DGAVFLAACSSGDTEEVLRLL-ERGADINYANVDGLTALHQAC----------------- 81
Query: 551 VDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVT 610
+D + L E+GA+I +G+ PLH AA G + IA+ L+ + A V + G T
Sbjct: 82 IDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDT 141
Query: 611 PLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAE 670
PL +A + + ++R A+ + + D L +
Sbjct: 142 PLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML------RDARQWLNSGHINDVRH 195
Query: 671 SKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNG 730
+K+G T LH++A +G+T++ LLI+ V+ + +G TPLH A K I + N
Sbjct: 196 AKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENL 255
Query: 731 AEIDPVTKAGFTPLHIASHFGQLNMVRYLVE 761
+++ V K G T +A +++ YL E
Sbjct: 256 CDMEAVNKVGQTAFDVADE----DILGYLEE 282
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 97/217 (44%), Gaps = 33/217 (15%)
Query: 607 NGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAK 666
+G L S D + V L LL+RGA + +G T LH A + +D+ L+E A
Sbjct: 40 DGAVFLAACSSGDTEEV-LRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN 98
Query: 667 PNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHL-------CAQEDK 719
N G+ PLH +A G+ D++ LI GA V G TPL + +++
Sbjct: 99 INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNE 158
Query: 720 VNVATITM------------------FNGAEIDPV--TKAGFTPLHIASHFGQLNMVRYL 759
VN + + N I+ V K+G T LH+A+ G +++ L
Sbjct: 159 VNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL 218
Query: 760 VENGANVNATTNLGYTPLHQASQQG-----RVLIIDL 791
++ +VN G+TPLH A+ G R+L+ +L
Sbjct: 219 IQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENL 255
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 89/184 (48%), Gaps = 27/184 (14%)
Query: 111 VRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAAR 170
V LL +G + A +T LH AC V MV+ L+ GANI +G PLH AA
Sbjct: 56 VLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAAS 115
Query: 171 SGHDNVIDILIEKGAALYSKTKNGLAPLHMAS--------------QG-DHEAA----TR 211
G+ ++ + LI +GA + + G PL +A QG D EAA R
Sbjct: 116 CGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEER 175
Query: 212 VLI-----YHGAG-VDEI--TVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTP 263
+++ + +G ++++ TALHVA+ G+ V K L+ + D N + +G+TP
Sbjct: 176 IMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTP 235
Query: 264 LHIA 267
LH A
Sbjct: 236 LHAA 239
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 706 NGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGAN 765
+G L C+ D V + + GA+I+ G T LH A ++MV++LVENGAN
Sbjct: 40 DGAVFLAACSSGDTEEVLRL-LERGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN 98
Query: 766 VNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATT 803
+N N G+ PLH A+ G + I + L+ GA A
Sbjct: 99 INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVN 136
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%)
Query: 130 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 189
T LHVA G +++LLI ++ K DG TPLH AA G + IL+E + +
Sbjct: 201 TALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEA 260
Query: 190 KTKNGLAPLHMASQ 203
K G +A +
Sbjct: 261 VNKVGQTAFDVADE 274
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 71 ATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLS 116
A G EV K+L+ +N++ +G+TPL+ AA + R L+
Sbjct: 208 AKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVE 253
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 82/279 (29%), Positives = 131/279 (46%), Gaps = 17/279 (6%)
Query: 431 HLAARANQ---TDIVRILLRNGASVDARARED-QTPLHVASRLGNGDIASLLLQHGASVD 486
HL +A Q D+V+ LL GA+V+ + E TPLH A ++ DI LLL+HGA
Sbjct: 27 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV 86
Query: 487 APTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQ 546
K+G T ++A G ++ + GA + GFT AA YG++K + L +
Sbjct: 87 LRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK 146
Query: 547 KDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDA----PVD 602
+ A V+ + K K G T L AA+ G +++ ++LL + D
Sbjct: 147 RGANVNLRRKTKE-------DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACD 199
Query: 603 SQGKNG-VTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLL 661
+ G+N + L + D + + LLLD GA + + G TPL +A +K + + LL
Sbjct: 200 NMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL 259
Query: 662 EYN-AKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGAT 699
E + N G T L L+ + ++ LL + GA+
Sbjct: 260 EQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS 298
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 98/324 (30%), Positives = 143/324 (44%), Gaps = 39/324 (12%)
Query: 76 EVAKILVDNGATINVQSLNG-FTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHV 134
++ + L++ GA +N Q G +TPL+ A Q + + +V LL G + L ++ TP +
Sbjct: 39 DLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFIL 98
Query: 135 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNG 194
A G V +++L +SKGA++ G T AA G + L ++GA + + K
Sbjct: 99 AAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRK-- 156
Query: 195 LAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRK-ADP 253
++ D E L GA TAL A+ GHV V K LLD AD
Sbjct: 157 -------TKEDQER----LRKGGA----------TALMDAAEKGHVEVLKILLDEMGADV 195
Query: 254 NARALNGFTPL-HIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKN 312
NA G L H + H+ LLD AD N R G TPL +A +K
Sbjct: 196 NACDNMGRNALIHALLSSDDSDVEAITHL-----LLDHGADVNVRGERGKTPLILAVEKK 250
Query: 313 RYKVVELLLKYG-ASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPL 371
+V+ LL+ I T G T L +A + IA L + GA+ D L
Sbjct: 251 HLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD------L 304
Query: 372 HLAARANQT-DIVRILLRNGASVD 394
+ AR N +V++LL +GA D
Sbjct: 305 VMTARRNYDHSLVKVLLSHGAKED 328
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 97/197 (49%), Gaps = 15/197 (7%)
Query: 648 AAKKNQMDIATTLLEYNAKPN-AESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKN 706
A + +D+ LLE A N E + G+TPLH + Q D+ LL+ HGA + KN
Sbjct: 32 AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKN 91
Query: 707 GLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANV 766
G TP L A V + + + GA+++ GFT A+ +G++ +++L + GANV
Sbjct: 92 GATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV 151
Query: 767 NATTNL----------GYTPLHQASQQGRVLIIDLLLGA-GAQPNATTNLFCCATI---L 812
N G T L A+++G V ++ +LL GA NA N+ A I L
Sbjct: 152 NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALL 211
Query: 813 VKNGAEIDPVTKLSDEH 829
+ ++++ +T L +H
Sbjct: 212 SSDDSDVEAITHLLLDH 228
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 119/259 (45%), Gaps = 24/259 (9%)
Query: 301 GFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAP 360
G+TPLH A + +R +VELLL++GA ++G TP +A+ G + + L GA
Sbjct: 59 GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADV 118
Query: 361 DTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSA 420
+ G T AA + ++ L + GA+V+ LRR + Q
Sbjct: 119 NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVN---------------LRRKTKEDQER 163
Query: 421 LTRVRGETPLHLAARANQTDIVRILLRN-GASVDARAREDQTPLHVASRLGNGD-----I 474
L R G T L AA ++++ILL GA V+A + L + + L + D I
Sbjct: 164 L-RKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL-IHALLSSDDSDVEAI 221
Query: 475 ASLLLQHGASVDAPTKDGYTALHISA-KEGQDEVASILTESGASITATTKKGFTPLHLAA 533
LLL HGA V+ + G T L ++ K+ V +L + I T G T L LA
Sbjct: 222 THLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAV 281
Query: 534 KYGRMKIAQMLLQKDAPVD 552
+ KIA++L ++ A D
Sbjct: 282 ELKLKKIAELLCKRGASTD 300
Score = 76.3 bits (186), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 78/297 (26%), Positives = 129/297 (43%), Gaps = 60/297 (20%)
Query: 372 HLAARANQ---TDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGET 428
HL +A Q D+V+ LL GA+V+ + E G T
Sbjct: 27 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEG-------------------------GWT 61
Query: 429 PLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAP 488
PLH A + ++ DIV +LLR+GA R + TP +A+ G+ + L L GA V+
Sbjct: 62 PLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNEC 121
Query: 489 TKDGYTALHISAKEGQDEVASILTESGASITATTKK----------GFTPLHLAAKYGRM 538
G+TA +A G+ + L + GA++ K G T L AA+ G +
Sbjct: 122 DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV 181
Query: 539 KIAQMLLQKDA----PVDSQGK-----------------VASILTESGASITATTKKGFT 577
++ ++LL + D+ G+ + +L + GA + ++G T
Sbjct: 182 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKT 241
Query: 578 PLHLAAKYGRMKIAQMLLQKD-APVDSQGKNGVTPLHVASHYDHQNVALLLLDRGAS 633
PL LA + + + Q LL+++ ++ +G T L +A + +A LL RGAS
Sbjct: 242 PLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS 298
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 124/290 (42%), Gaps = 35/290 (12%)
Query: 496 LHISAKEGQD-EVASILTESGASITATTKKG-FTPLHLAAKYGRMKIAQMLLQKDAPVDS 553
L I A + +D ++ L E GA++ ++G +TPLH A + R I ++LL+
Sbjct: 28 LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR------- 80
Query: 554 QGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLH 613
GA K G TP LAA G +K+ ++ L K A V+ G T
Sbjct: 81 ----------HGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFM 130
Query: 614 VASHYDHQNVALLLLDRGAS----------PHAVAKNGYTPLHIAAKKNQMDIATTLL-E 662
A+ Y L RGA+ + K G T L AA+K +++ LL E
Sbjct: 131 EAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE 190
Query: 663 YNAKPNAESKAGFTPL---HLSAQEGHTD-MSSLLIEHGATVSHQAKNGLTPLHLCAQED 718
A NA G L LS+ + + ++ LL++HGA V+ + + G TPL L ++
Sbjct: 191 MGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKK 250
Query: 719 KVN-VATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVN 767
+ V + EI+ G T L +A + L + GA+ +
Sbjct: 251 HLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD 300
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 116/273 (42%), Gaps = 48/273 (17%)
Query: 260 GFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVEL 319
G+TPLH A + +R + + LL ADP R NG TP +A K+++L
Sbjct: 59 GWTPLHNAVQMSRED--------IVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKL 110
Query: 320 LLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGA--------APDTATVR--GET 369
L GA + G T A+ G + FL + GA D +R G T
Sbjct: 111 FLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGAT 170
Query: 370 PLHLAARANQTDIVRILLRN-GASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGET 428
L AA ++++ILL GA V+A + ++AL
Sbjct: 171 ALMDAAEKGHVEVLKILLDEMGADVNA-----------------CDNMGRNAL------- 206
Query: 429 PLHLAARANQTD---IVRILLRNGASVDARAREDQTPLHVASRLGN-GDIASLLLQHGAS 484
+H ++ +D I +LL +GA V+ R +TPL +A + G + LL Q
Sbjct: 207 -IHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE 265
Query: 485 VDAPTKDGYTALHISAKEGQDEVASILTESGAS 517
++ DG TAL ++ + ++A +L + GAS
Sbjct: 266 INDTDSDGKTALLLAVELKLKKIAELLCKRGAS 298
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 77/177 (43%), Gaps = 15/177 (8%)
Query: 639 KNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGA 698
+ G+TPLH A + ++ DI LL + A P K G TP L+A G + L + GA
Sbjct: 57 EGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGA 116
Query: 699 TVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEI----------DPVTKAGFTPLHIAS 748
V+ G T A KV GA + + + K G T L A+
Sbjct: 117 DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA 176
Query: 749 HFGQLNMVRYLV-ENGANVNATTNLGYTPLHQA---SQQGRV-LIIDLLLGAGAQPN 800
G + +++ L+ E GA+VNA N+G L A S V I LLL GA N
Sbjct: 177 EKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN 233
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 97/222 (43%), Gaps = 16/222 (7%)
Query: 588 MKIAQMLLQKDAPVDSQGKNG-VTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLH 646
+ + Q LL+ A V+ Q + G TPLH A +++ LLL GA P KNG TP
Sbjct: 38 VDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFI 97
Query: 647 IAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAK- 705
+AA + + L A N GFT +A G L + GA V+ + K
Sbjct: 98 LAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKT 157
Query: 706 ---------NGLTPLHLCAQEDKVNVATITMFN-GAEIDPVTKAGFTPL---HIASHFGQ 752
G T L A++ V V I + GA+++ G L ++S
Sbjct: 158 KEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSD 217
Query: 753 LNMVRYLV-ENGANVNATTNLGYTPLHQASQQGRVLIIDLLL 793
+ + +L+ ++GA+VN G TPL A ++ + ++ LL
Sbjct: 218 VEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL 259
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 68/117 (58%), Gaps = 1/117 (0%)
Query: 577 TPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHA 636
TPLH AA Y R+ + + LLQ A V ++ K G+ PLH A Y H VA LL+ GA +
Sbjct: 44 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 103
Query: 637 VAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLL 693
+TPLH AA K + +I LL++ A P +++ G TPL L ++G TD+ LL
Sbjct: 104 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL-VKDGDTDIQDLL 159
Score = 79.3 bits (194), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 71/125 (56%), Gaps = 2/125 (1%)
Query: 425 RGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGAS 484
R TPLH AA N+ +V LL++GA V A+ + PLH A G+ ++A LL++HGA
Sbjct: 41 RQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAV 100
Query: 485 VDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
V+ +T LH +A +G+ E+ +L + GA T + G TPL L K G I Q L
Sbjct: 101 VNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL-VKDGDTDI-QDL 158
Query: 545 LQKDA 549
L+ DA
Sbjct: 159 LRGDA 163
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 63/112 (56%), Gaps = 2/112 (1%)
Query: 295 NARALNG--FTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIF 352
N R + G TPLH A NR VVE LL++GA + A + GL PLH A G +A
Sbjct: 34 NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAEL 93
Query: 353 LLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPL 404
L++ GA + A + TPLH AA + +I ++LL++GA + R+ TPL
Sbjct: 94 LVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 145
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 77/162 (47%), Gaps = 13/162 (8%)
Query: 234 ASHCGHVRVAKTLLDRKADPNARALNG--FTPLHIACKKNRYKSSHCNHVWVAKTLLDRK 291
A+ G V K L ++ N R + G TPLH A NR V V + LL
Sbjct: 15 AAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNR--------VSVVEYLLQHG 65
Query: 292 ADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAI 351
AD +A+ G PLH AC Y+V ELL+K+GA + TPLH A+ G I
Sbjct: 66 ADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICK 125
Query: 352 FLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASV 393
LLQ GA P G TPL L + TDI + LLR A++
Sbjct: 126 LLLQHGADPTKKNRDGNTPLDL-VKDGDTDI-QDLLRGDAAL 165
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 73/139 (52%), Gaps = 3/139 (2%)
Query: 582 AAKYGRMKIAQML--LQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAK 639
AAK G ++ + L +Q D +G+ TPLH A+ Y+ +V LL GA HA K
Sbjct: 15 AAKAGDVETVKKLCTVQSVNCRDIEGRQS-TPLHFAAGYNRVSVVEYLLQHGADVHAKDK 73
Query: 640 NGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGAT 699
G PLH A ++A L+++ A N FTPLH +A +G ++ LL++HGA
Sbjct: 74 GGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD 133
Query: 700 VSHQAKNGLTPLHLCAQED 718
+ + ++G TPL L D
Sbjct: 134 PTKKNRDGNTPLDLVKDGD 152
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 87 TINVQSLNG--FTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMV 144
++N + + G TPL+ AA N VV YLL G + + + PLH AC +G +
Sbjct: 32 SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVA 91
Query: 145 ELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQG 204
ELL+ GA + TPLH AA G + +L++ GA K ++G PL + G
Sbjct: 92 ELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDG 151
Query: 205 D 205
D
Sbjct: 152 D 152
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 58/104 (55%)
Query: 643 TPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSH 702
TPLH AA N++ + LL++ A +A+ K G PLH + GH +++ LL++HGA V+
Sbjct: 44 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 103
Query: 703 QAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHI 746
TPLH A + K + + + +GA+ + G TPL +
Sbjct: 104 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 147
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 56/108 (51%)
Query: 709 TPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNA 768
TPLH A ++V+V + +GA++ K G PLH A +G + LV++GA VN
Sbjct: 44 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 103
Query: 769 TTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNLFCCATILVKNG 816
+TPLH+A+ +G+ I LLL GA P LVK+G
Sbjct: 104 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDG 151
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 71/163 (43%), Gaps = 19/163 (11%)
Query: 499 SAKEGQDE-VASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKV 557
+AK G E V + T + + TPLH AA Y R+ + + LLQ
Sbjct: 15 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ----------- 63
Query: 558 ASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASH 617
GA + A K G PLH A YG ++A++L++ A V+ TPLH A+
Sbjct: 64 ------HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAA 117
Query: 618 YDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTL 660
+ LLL GA P ++G TPL + K DI L
Sbjct: 118 KGKYEICKLLLQHGADPTKKNRDGNTPLDL-VKDGDTDIQDLL 159
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 56/104 (53%)
Query: 163 TPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDE 222
TPLH AA +V++ L++ GA +++K K GL PLH A H +L+ HGA V+
Sbjct: 44 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 103
Query: 223 ITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHI 266
+ T LH A+ G + K LL ADP + +G TPL +
Sbjct: 104 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 147
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 63/141 (44%), Gaps = 8/141 (5%)
Query: 198 LHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARA 257
L A GD E ++ +I T LH A+ V V + LL AD +A+
Sbjct: 13 LEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKD 72
Query: 258 LNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVV 317
G PLH AC Y+ VA+ L+ A N L FTPLH A K +Y++
Sbjct: 73 KGGLVPLHNACSYGHYE--------VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEIC 124
Query: 318 ELLLKYGASIAATTESGLTPL 338
+LLL++GA G TPL
Sbjct: 125 KLLLQHGADPTKKNRDGNTPL 145
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 74/175 (42%), Gaps = 43/175 (24%)
Query: 353 LLQAGAAPDTATV----------------RGETPLHLAARANQTDIVRILLRNGASVDAR 396
LL+A A D TV R TPLH AA N+ +V LL++GA V A+
Sbjct: 12 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK 71
Query: 397 AREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARA 456
+ G PLH A ++ +L+++GA V+
Sbjct: 72 DK--------------------------GGLVPLHNACSYGHYEVAELLVKHGAVVNVAD 105
Query: 457 REDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASIL 511
TPLH A+ G +I LLLQHGA +DG T L + K+G ++ +L
Sbjct: 106 LWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL-VKDGDTDIQDLL 159
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 50/89 (56%)
Query: 130 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 189
TPLH A + +V++VE L+ GA++ AK + GL PLH A GH V ++L++ GA +
Sbjct: 44 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 103
Query: 190 KTKNGLAPLHMASQGDHEAATRVLIYHGA 218
PLH A+ ++L+ HGA
Sbjct: 104 ADLWKFTPLHEAAAKGKYEICKLLLQHGA 132
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Query: 676 TPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDP 735
TPLH +A + L++HGA V + K GL PLH VA + + +GA ++
Sbjct: 44 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 103
Query: 736 VTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGA 795
FTPLH A+ G+ + + L+++GA+ G TPL + G I DLL G
Sbjct: 104 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL-DLVKDGDTDIQDLLRGD 162
Query: 796 GA 797
A
Sbjct: 163 AA 164
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 58/126 (46%), Gaps = 17/126 (13%)
Query: 494 TALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDS 553
T LH +A + V L + GA + A K G PLH A YG ++A++L++
Sbjct: 44 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK------- 96
Query: 554 QGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLH 613
GA + FTPLH AA G+ +I ++LLQ A + ++G TPL
Sbjct: 97 ----------HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLD 146
Query: 614 VASHYD 619
+ D
Sbjct: 147 LVKDGD 152
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 51/111 (45%), Gaps = 8/111 (7%)
Query: 197 PLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNAR 256
PLH A+ + + L+ HGA V L LH A GH VA+ L+ A N
Sbjct: 45 PLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVA 104
Query: 257 ALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHI 307
L FTPLH A K +Y+ + K LL ADP + +G TPL +
Sbjct: 105 DLWKFTPLHEAAAKGKYE--------ICKLLLQHGADPTKKNRDGNTPLDL 147
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 77 VAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVAC 136
V + L+ +GA ++ + G PL+ A H V L+ G +A TPLH A
Sbjct: 57 VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAA 116
Query: 137 KWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 180
GK + +LL+ GA+ K RDG TPL + G ++ D+L
Sbjct: 117 AKGKYEICKLLLQHGADPTKKNRDGNTPLDL-VKDGDTDIQDLL 159
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
G EVA++LV +GA +NV L FTPL+ AA + + + LL G + T TPL
Sbjct: 86 GHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 145
Query: 133 HVACKWGKVAMVELL 147
+ K G + +LL
Sbjct: 146 DLV-KDGDTDIQDLL 159
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 68/117 (58%), Gaps = 1/117 (0%)
Query: 577 TPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHA 636
TPLH AA Y R+ + + LLQ A V ++ K G+ PLH A Y H VA LL+ GA +
Sbjct: 48 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 107
Query: 637 VAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLL 693
+TPLH AA K + +I LL++ A P +++ G TPL L ++G TD+ LL
Sbjct: 108 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL-VKDGDTDIQDLL 163
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 77/164 (46%), Gaps = 12/164 (7%)
Query: 234 ASHCGHVRVAKTLLDRKADPNARALNG--FTPLHIACKKNRYKSSHCNHVWVAKTLLDRK 291
A+ G V K L ++ N R + G TPLH A NR V V + LL
Sbjct: 19 AAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNR--------VSVVEYLLQHG 69
Query: 292 ADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAI 351
AD +A+ G PLH AC Y+V ELL+K+GA + TPLH A+ G I
Sbjct: 70 ADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICK 129
Query: 352 FLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDA 395
LLQ GA P G TPL L + TDI +L + A +DA
Sbjct: 130 LLLQHGADPTKKNRDGNTPLDL-VKDGDTDIQDLLRGDAALLDA 172
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 72/127 (56%), Gaps = 2/127 (1%)
Query: 425 RGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGAS 484
R TPLH AA N+ +V LL++GA V A+ + PLH A G+ ++A LL++HGA
Sbjct: 45 RQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAV 104
Query: 485 VDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
V+ +T LH +A +G+ E+ +L + GA T + G TPL L K G I Q L
Sbjct: 105 VNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL-VKDGDTDI-QDL 162
Query: 545 LQKDAPV 551
L+ DA +
Sbjct: 163 LRGDAAL 169
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 63/112 (56%), Gaps = 2/112 (1%)
Query: 295 NARALNG--FTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIF 352
N R + G TPLH A NR VVE LL++GA + A + GL PLH A G +A
Sbjct: 38 NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAEL 97
Query: 353 LLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPL 404
L++ GA + A + TPLH AA + +I ++LL++GA + R+ TPL
Sbjct: 98 LVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 149
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 81/159 (50%), Gaps = 4/159 (2%)
Query: 582 AAKYGRMKIAQML--LQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAK 639
AAK G ++ + L +Q D +G+ TPLH A+ Y+ +V LL GA HA K
Sbjct: 19 AAKAGDVETVKKLCTVQSVNCRDIEGRQS-TPLHFAAGYNRVSVVEYLLQHGADVHAKDK 77
Query: 640 NGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGAT 699
G PLH A ++A L+++ A N FTPLH +A +G ++ LL++HGA
Sbjct: 78 GGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD 137
Query: 700 VSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTK 738
+ + ++G TPL L D ++ + + A +D K
Sbjct: 138 PTKKNRDGNTPLDLVKDGD-TDIQDLLRGDAALLDAAKK 175
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 87 TINVQSLNG--FTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMV 144
++N + + G TPL+ AA N VV YLL G + + + PLH AC +G +
Sbjct: 36 SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVA 95
Query: 145 ELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQG 204
ELL+ GA + TPLH AA G + +L++ GA K ++G PL + G
Sbjct: 96 ELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDG 155
Query: 205 D 205
D
Sbjct: 156 D 156
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 56/108 (51%)
Query: 709 TPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNA 768
TPLH A ++V+V + +GA++ K G PLH A +G + LV++GA VN
Sbjct: 48 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 107
Query: 769 TTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNLFCCATILVKNG 816
+TPLH+A+ +G+ I LLL GA P LVK+G
Sbjct: 108 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDG 155
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 58/104 (55%)
Query: 643 TPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSH 702
TPLH AA N++ + LL++ A +A+ K G PLH + GH +++ LL++HGA V+
Sbjct: 48 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 107
Query: 703 QAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHI 746
TPLH A + K + + + +GA+ + G TPL +
Sbjct: 108 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 151
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 71/163 (43%), Gaps = 19/163 (11%)
Query: 499 SAKEGQDE-VASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKV 557
+AK G E V + T + + TPLH AA Y R+ + + LLQ
Sbjct: 19 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ----------- 67
Query: 558 ASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASH 617
GA + A K G PLH A YG ++A++L++ A V+ TPLH A+
Sbjct: 68 ------HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAA 121
Query: 618 YDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTL 660
+ LLL GA P ++G TPL + K DI L
Sbjct: 122 KGKYEICKLLLQHGADPTKKNRDGNTPLDL-VKDGDTDIQDLL 163
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 56/104 (53%)
Query: 163 TPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDE 222
TPLH AA +V++ L++ GA +++K K GL PLH A H +L+ HGA V+
Sbjct: 48 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 107
Query: 223 ITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHI 266
+ T LH A+ G + K LL ADP + +G TPL +
Sbjct: 108 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 151
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 63/141 (44%), Gaps = 8/141 (5%)
Query: 198 LHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARA 257
L A GD E ++ +I T LH A+ V V + LL AD +A+
Sbjct: 17 LEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKD 76
Query: 258 LNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVV 317
G PLH AC Y+ VA+ L+ A N L FTPLH A K +Y++
Sbjct: 77 KGGLVPLHNACSYGHYE--------VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEIC 128
Query: 318 ELLLKYGASIAATTESGLTPL 338
+LLL++GA G TPL
Sbjct: 129 KLLLQHGADPTKKNRDGNTPL 149
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 78/187 (41%), Gaps = 43/187 (22%)
Query: 353 LLQAGAAPDTATV----------------RGETPLHLAARANQTDIVRILLRNGASVDAR 396
LL+A A D TV R TPLH AA N+ +V LL++GA V A+
Sbjct: 16 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK 75
Query: 397 AREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARA 456
+ G PLH A ++ +L+++GA V+
Sbjct: 76 DK--------------------------GGLVPLHNACSYGHYEVAELLVKHGAVVNVAD 109
Query: 457 REDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGA 516
TPLH A+ G +I LLLQHGA +DG T L + K+G ++ +L A
Sbjct: 110 LWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL-VKDGDTDIQDLLRGDAA 168
Query: 517 SITATTK 523
+ A K
Sbjct: 169 LLDAAKK 175
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 50/89 (56%)
Query: 130 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 189
TPLH A + +V++VE L+ GA++ AK + GL PLH A GH V ++L++ GA +
Sbjct: 48 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 107
Query: 190 KTKNGLAPLHMASQGDHEAATRVLIYHGA 218
PLH A+ ++L+ HGA
Sbjct: 108 ADLWKFTPLHEAAAKGKYEICKLLLQHGA 136
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 62/126 (49%), Gaps = 1/126 (0%)
Query: 676 TPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDP 735
TPLH +A + L++HGA V + K GL PLH VA + + +GA ++
Sbjct: 48 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 107
Query: 736 VTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGA 795
FTPLH A+ G+ + + L+++GA+ G TPL + G I DLL G
Sbjct: 108 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL-DLVKDGDTDIQDLLRGD 166
Query: 796 GAQPNA 801
A +A
Sbjct: 167 AALLDA 172
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 51/111 (45%), Gaps = 8/111 (7%)
Query: 197 PLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNAR 256
PLH A+ + + L+ HGA V L LH A GH VA+ L+ A N
Sbjct: 49 PLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVA 108
Query: 257 ALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHI 307
L FTPLH A K +Y+ + K LL ADP + +G TPL +
Sbjct: 109 DLWKFTPLHEAAAKGKYE--------ICKLLLQHGADPTKKNRDGNTPLDL 151
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 68/117 (58%), Gaps = 1/117 (0%)
Query: 577 TPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHA 636
TPLH AA Y R+ + + LLQ A V ++ K G+ PLH A Y H VA LL+ GA +
Sbjct: 46 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 105
Query: 637 VAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLL 693
+TPLH AA K + +I LL++ A P +++ G TPL L ++G TD+ LL
Sbjct: 106 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL-VKDGDTDIQDLL 161
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 71/125 (56%), Gaps = 2/125 (1%)
Query: 425 RGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGAS 484
R TPLH AA N+ +V LL++GA V A+ + PLH A G+ ++A LL++HGA
Sbjct: 43 RQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAV 102
Query: 485 VDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
V+ +T LH +A +G+ E+ +L + GA T + G TPL L K G I Q L
Sbjct: 103 VNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL-VKDGDTDI-QDL 160
Query: 545 LQKDA 549
L+ DA
Sbjct: 161 LRGDA 165
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 63/112 (56%), Gaps = 2/112 (1%)
Query: 295 NARALNG--FTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIF 352
N R + G TPLH A NR VVE LL++GA + A + GL PLH A G +A
Sbjct: 36 NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAEL 95
Query: 353 LLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPL 404
L++ GA + A + TPLH AA + +I ++LL++GA + R+ TPL
Sbjct: 96 LVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 147
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 77/162 (47%), Gaps = 13/162 (8%)
Query: 234 ASHCGHVRVAKTLLDRKADPNARALNG--FTPLHIACKKNRYKSSHCNHVWVAKTLLDRK 291
A+ G V K L ++ N R + G TPLH A NR V V + LL
Sbjct: 17 AAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNR--------VSVVEYLLQHG 67
Query: 292 ADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAI 351
AD +A+ G PLH AC Y+V ELL+K+GA + TPLH A+ G I
Sbjct: 68 ADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICK 127
Query: 352 FLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASV 393
LLQ GA P G TPL L + TDI + LLR A++
Sbjct: 128 LLLQHGADPTKKNRDGNTPLDL-VKDGDTDI-QDLLRGDAAL 167
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 73/139 (52%), Gaps = 3/139 (2%)
Query: 582 AAKYGRMKIAQML--LQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAK 639
AAK G ++ + L +Q D +G+ TPLH A+ Y+ +V LL GA HA K
Sbjct: 17 AAKAGDVETVKKLCTVQSVNCRDIEGRQS-TPLHFAAGYNRVSVVEYLLQHGADVHAKDK 75
Query: 640 NGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGAT 699
G PLH A ++A L+++ A N FTPLH +A +G ++ LL++HGA
Sbjct: 76 GGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD 135
Query: 700 VSHQAKNGLTPLHLCAQED 718
+ + ++G TPL L D
Sbjct: 136 PTKKNRDGNTPLDLVKDGD 154
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 87 TINVQSLNG--FTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMV 144
++N + + G TPL+ AA N VV YLL G + + + PLH AC +G +
Sbjct: 34 SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVA 93
Query: 145 ELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQG 204
ELL+ GA + TPLH AA G + +L++ GA K ++G PL + G
Sbjct: 94 ELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDG 153
Query: 205 D 205
D
Sbjct: 154 D 154
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 58/104 (55%)
Query: 643 TPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSH 702
TPLH AA N++ + LL++ A +A+ K G PLH + GH +++ LL++HGA V+
Sbjct: 46 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 105
Query: 703 QAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHI 746
TPLH A + K + + + +GA+ + G TPL +
Sbjct: 106 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 149
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 56/108 (51%)
Query: 709 TPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNA 768
TPLH A ++V+V + +GA++ K G PLH A +G + LV++GA VN
Sbjct: 46 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 105
Query: 769 TTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNLFCCATILVKNG 816
+TPLH+A+ +G+ I LLL GA P LVK+G
Sbjct: 106 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDG 153
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 71/163 (43%), Gaps = 19/163 (11%)
Query: 499 SAKEGQDE-VASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKV 557
+AK G E V + T + + TPLH AA Y R+ + + LLQ
Sbjct: 17 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ----------- 65
Query: 558 ASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASH 617
GA + A K G PLH A YG ++A++L++ A V+ TPLH A+
Sbjct: 66 ------HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAA 119
Query: 618 YDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTL 660
+ LLL GA P ++G TPL + K DI L
Sbjct: 120 KGKYEICKLLLQHGADPTKKNRDGNTPLDL-VKDGDTDIQDLL 161
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 56/104 (53%)
Query: 163 TPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDE 222
TPLH AA +V++ L++ GA +++K K GL PLH A H +L+ HGA V+
Sbjct: 46 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 105
Query: 223 ITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHI 266
+ T LH A+ G + K LL ADP + +G TPL +
Sbjct: 106 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 149
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 63/141 (44%), Gaps = 8/141 (5%)
Query: 198 LHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARA 257
L A GD E ++ +I T LH A+ V V + LL AD +A+
Sbjct: 15 LEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKD 74
Query: 258 LNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVV 317
G PLH AC Y+ VA+ L+ A N L FTPLH A K +Y++
Sbjct: 75 KGGLVPLHNACSYGHYE--------VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEIC 126
Query: 318 ELLLKYGASIAATTESGLTPL 338
+LLL++GA G TPL
Sbjct: 127 KLLLQHGADPTKKNRDGNTPL 147
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 50/89 (56%)
Query: 130 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 189
TPLH A + +V++VE L+ GA++ AK + GL PLH A GH V ++L++ GA +
Sbjct: 46 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 105
Query: 190 KTKNGLAPLHMASQGDHEAATRVLIYHGA 218
PLH A+ ++L+ HGA
Sbjct: 106 ADLWKFTPLHEAAAKGKYEICKLLLQHGA 134
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 74/175 (42%), Gaps = 43/175 (24%)
Query: 353 LLQAGAAPDTATV----------------RGETPLHLAARANQTDIVRILLRNGASVDAR 396
LL+A A D TV R TPLH AA N+ +V LL++GA V A+
Sbjct: 14 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK 73
Query: 397 AREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARA 456
+ G PLH A ++ +L+++GA V+
Sbjct: 74 DK--------------------------GGLVPLHNACSYGHYEVAELLVKHGAVVNVAD 107
Query: 457 REDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASIL 511
TPLH A+ G +I LLLQHGA +DG T L + K+G ++ +L
Sbjct: 108 LWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL-VKDGDTDIQDLL 161
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Query: 676 TPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDP 735
TPLH +A + L++HGA V + K GL PLH VA + + +GA ++
Sbjct: 46 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 105
Query: 736 VTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGA 795
FTPLH A+ G+ + + L+++GA+ G TPL + G I DLL G
Sbjct: 106 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL-DLVKDGDTDIQDLLRGD 164
Query: 796 GA 797
A
Sbjct: 165 AA 166
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 61/126 (48%), Gaps = 17/126 (13%)
Query: 494 TALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDS 553
T LH +A + V L + GA + A K G PLH A YG ++A++L++ A V+
Sbjct: 46 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVN- 104
Query: 554 QGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLH 613
VA + FTPLH AA G+ +I ++LLQ A + ++G TPL
Sbjct: 105 ---VADLWK-------------FTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLD 148
Query: 614 VASHYD 619
+ D
Sbjct: 149 LVKDGD 154
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 51/111 (45%), Gaps = 8/111 (7%)
Query: 197 PLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNAR 256
PLH A+ + + L+ HGA V L LH A GH VA+ L+ A N
Sbjct: 47 PLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVA 106
Query: 257 ALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHI 307
L FTPLH A K +Y+ + K LL ADP + +G TPL +
Sbjct: 107 DLWKFTPLHEAAAKGKYE--------ICKLLLQHGADPTKKNRDGNTPLDL 149
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 77 VAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVAC 136
V + L+ +GA ++ + G PL+ A H V L+ G +A TPLH A
Sbjct: 59 VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAA 118
Query: 137 KWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 180
GK + +LL+ GA+ K RDG TPL + G ++ D+L
Sbjct: 119 AKGKYEICKLLLQHGADPTKKNRDGNTPLDL-VKDGDTDIQDLL 161
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
G EVA++LV +GA +NV L FTPL+ AA + + + LL G + T TPL
Sbjct: 88 GHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 147
Query: 133 HVACKWGKVAMVELL 147
+ K G + +LL
Sbjct: 148 DLV-KDGDTDIQDLL 161
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 82/171 (47%), Gaps = 27/171 (15%)
Query: 374 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLA 433
AARA Q D VRIL+ NGA T G +PLHLA
Sbjct: 9 AARAGQDDEVRILMANGAPF---------------------------TTDWLGTSPLHLA 41
Query: 434 ARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGY 493
A+ +LLR G S DAR + D+TPLH+A+ G+ +I +LL+HGA V+A
Sbjct: 42 AQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKM 101
Query: 494 TALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
TALH + + EV +L + GA + +K T ++ G +A++L
Sbjct: 102 TALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 81/162 (50%), Gaps = 18/162 (11%)
Query: 499 SAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVA 558
+A+ GQD+ IL +GA T T G +PLHLAA+YG ++LL+
Sbjct: 9 AARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLR------------ 55
Query: 559 SILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHY 618
+G S A TK TPLH+AA G I ++LL+ A V+++ +T LH A+ +
Sbjct: 56 -----AGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEH 110
Query: 619 DHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTL 660
+HQ V LL+ GA H +K T I+ D+A L
Sbjct: 111 NHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 70/120 (58%), Gaps = 1/120 (0%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
GQ++ +IL+ NGA L G +PL++AAQ H LL G ++ T+ + TPL
Sbjct: 13 GQDDEVRILMANGAPFTTDWL-GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPL 71
Query: 133 HVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTK 192
H+A G +VE+L+ GA++ AK +T LH A H V+++LI+ GA +++++K
Sbjct: 72 HMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSK 131
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 68/125 (54%), Gaps = 1/125 (0%)
Query: 433 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDG 492
AARA Q D VRIL+ NGA +PLH+A++ G+ +LL+ G S DA TK
Sbjct: 9 AARAGQDDEVRILMANGAPFTTDWL-GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVD 67
Query: 493 YTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVD 552
T LH++A EG + +L + GA + A T LH A ++ ++ ++L++ A V
Sbjct: 68 RTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH 127
Query: 553 SQGKV 557
+Q K
Sbjct: 128 TQSKF 132
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 72/140 (51%), Gaps = 1/140 (0%)
Query: 554 QGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLH 613
Q IL +GA T T G +PLHLAA+YG ++LL+ D++ K TPLH
Sbjct: 14 QDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLH 72
Query: 614 VASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKA 673
+A+ H N+ +LL GA +A T LH A + N ++ L++Y A + +SK
Sbjct: 73 MAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKF 132
Query: 674 GFTPLHLSAQEGHTDMSSLL 693
T +S G+ D++ +L
Sbjct: 133 CKTAFDISIDNGNEDLAEIL 152
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 81/148 (54%), Gaps = 1/148 (0%)
Query: 99 LYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKT 158
L AA+ D VR L++ G T +PLH+A ++G + E+L+ G + +A+T
Sbjct: 6 LLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDART 64
Query: 159 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGA 218
+ TPLH AA GH N++++L++ GA + +K + LH A++ +H+ +LI +GA
Sbjct: 65 KVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGA 124
Query: 219 GVDEITVDYLTALHVASHCGHVRVAKTL 246
V + TA ++ G+ +A+ L
Sbjct: 125 DVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 73/144 (50%), Gaps = 1/144 (0%)
Query: 582 AAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNG 641
AA+ G+ ++L+ AP + G +PLH+A+ Y H + +LL G S A K
Sbjct: 9 AARAGQDDEVRILMANGAPFTTDWL-GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVD 67
Query: 642 YTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVS 701
TPLH+AA + +I LL++ A NA+ T LH + + H ++ LLI++GA V
Sbjct: 68 RTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH 127
Query: 702 HQAKNGLTPLHLCAQEDKVNVATI 725
Q+K T + ++A I
Sbjct: 128 TQSKFCKTAFDISIDNGNEDLAEI 151
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 73/140 (52%), Gaps = 4/140 (2%)
Query: 681 SAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAG 740
+A+ G D +L+ +GA + G +PLHL AQ + + + G D TK
Sbjct: 9 AARAGQDDEVRILMANGAPFTTDWL-GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVD 67
Query: 741 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 800
TPLH+A+ G N+V L+++GA+VNA L T LH A++ +++LL+ GA +
Sbjct: 68 RTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH 127
Query: 801 ATTNLFC--CATILVKNGAE 818
T + FC I + NG E
Sbjct: 128 -TQSKFCKTAFDISIDNGNE 146
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 77/162 (47%), Gaps = 27/162 (16%)
Query: 317 VELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAAR 376
V +L+ GA T G +PLH+A+ G + LL+AG + D T TPLH+AA
Sbjct: 18 VRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAAS 76
Query: 377 ANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARA 436
+IV +LL++GA V+A+ D + T LH A
Sbjct: 77 EGHANIVEVLLKHGADVNAK---DMLKM-----------------------TALHWATEH 110
Query: 437 NQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLL 478
N ++V +L++ GA V +++ +T ++ GN D+A +L
Sbjct: 111 NHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 74/153 (48%), Gaps = 9/153 (5%)
Query: 168 AARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDY 227
AAR+G D+ + IL+ GA ++ G +PLH+A+Q H + T VL+ G D T
Sbjct: 9 AARAGQDDEVRILMANGAP-FTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVD 67
Query: 228 LTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTL 287
T LH+A+ GH + + LL AD NA+ + T LH A + NH V + L
Sbjct: 68 RTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEH--------NHQEVVELL 119
Query: 288 LDRKADPNARALNGFTPLHIACKKNRYKVVELL 320
+ AD + ++ T I+ + E+L
Sbjct: 120 IKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 58/107 (54%)
Query: 301 GFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAP 360
G +PLH+A + + E+LL+ G S A T+ TPLH+A+ G NI LL+ GA
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV 93
Query: 361 DTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVA 407
+ + T LH A N ++V +L++ GA V +++ +T ++
Sbjct: 94 NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDIS 140
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 1/145 (0%)
Query: 648 AAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNG 707
AA+ Q D +L N P G +PLHL+AQ GH + +L+ G + + K
Sbjct: 9 AARAGQ-DDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVD 67
Query: 708 LTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVN 767
TPLH+ A E N+ + + +GA+++ T LH A+ +V L++ GA+V+
Sbjct: 68 RTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH 127
Query: 768 ATTNLGYTPLHQASQQGRVLIIDLL 792
+ T + G + ++L
Sbjct: 128 TQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 1/118 (0%)
Query: 135 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNG 194
A + G+ V +L++ GA G +PLH AA+ GH + ++L+ G + ++TK
Sbjct: 9 AARAGQDDEVRILMANGAPFTTDWL-GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVD 67
Query: 195 LAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKAD 252
PLHMA+ H VL+ HGA V+ + +TALH A+ H V + L+ AD
Sbjct: 68 RTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGAD 125
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 1/134 (0%)
Query: 626 LLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEG 685
+L+ GA P G +PLH+AA+ LL +A +K TPLH++A EG
Sbjct: 20 ILMANGA-PFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEG 78
Query: 686 HTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLH 745
H ++ +L++HGA V+ + +T LH + + V + + GA++ +K T
Sbjct: 79 HANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFD 138
Query: 746 IASHFGQLNMVRYL 759
I+ G ++ L
Sbjct: 139 ISIDNGNEDLAEIL 152
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 8/127 (6%)
Query: 260 GFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVEL 319
G +PLH+A + + ++ + LL +AR TPLH+A + +VE+
Sbjct: 34 GTSPLHLAAQYGHFSTT--------EVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEV 85
Query: 320 LLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQ 379
LLK+GA + A +T LH A+ + L++ GA T + +T ++
Sbjct: 86 LLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGN 145
Query: 380 TDIVRIL 386
D+ IL
Sbjct: 146 EDLAEIL 152
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 55/108 (50%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
G ++L+ G + + ++ TPL+MAA E H +V LL G + +T L
Sbjct: 45 GHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTAL 104
Query: 133 HVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 180
H A + +VELLI GA++ +++ T + +G++++ +IL
Sbjct: 105 HWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 76/138 (55%), Gaps = 26/138 (18%)
Query: 374 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLA 433
AARA Q D VRIL+ NGA V+A ED+ L TPLHLA
Sbjct: 21 AARAGQDDEVRILMANGADVNA---EDKVGL-----------------------TPLHLA 54
Query: 434 ARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGY 493
A + +IV +LL+NGA V+A +TPLH+ + G+ +I +LL+HGA V+A K G
Sbjct: 55 AMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGK 114
Query: 494 TALHISAKEGQDEVASIL 511
TA IS G +++A IL
Sbjct: 115 TAFDISIDNGNEDLAEIL 132
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 61/104 (58%)
Query: 681 SAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAG 740
+A+ G D +L+ +GA V+ + K GLTPLHL A D + + + + NGA+++ + G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIG 80
Query: 741 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQG 784
TPLH+ + +G L +V L+++GA+VNA G T + G
Sbjct: 81 ETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNG 124
Score = 76.3 bits (186), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 17/129 (13%)
Query: 499 SAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVA 558
+A+ GQD+ IL +GA + A K G TPLHLAA ++I ++LL+
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLK------------ 68
Query: 559 SILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHY 618
+GA + A G TPLHL A YG ++I ++LL+ A V++Q K G T ++
Sbjct: 69 -----NGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDN 123
Query: 619 DHQNVALLL 627
++++A +L
Sbjct: 124 GNEDLAEIL 132
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 65/112 (58%)
Query: 433 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDG 492
AARA Q D VRIL+ NGA V+A + TPLH+A+ + +I +LL++GA V+A G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIG 80
Query: 493 YTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
T LH+ A G E+ +L + GA + A K G T ++ G +A++L
Sbjct: 81 ETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 65/112 (58%)
Query: 582 AAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNG 641
AA+ G+ ++L+ A V+++ K G+TPLH+A+ DH + +LL GA +A+ G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIG 80
Query: 642 YTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLL 693
TPLH+ A ++I LL++ A NA+ K G T +S G+ D++ +L
Sbjct: 81 ETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 60/106 (56%), Gaps = 4/106 (3%)
Query: 714 CAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 773
Q+D+V I M NGA+++ K G TPLH+A+ L +V L++NGA+VNA +G
Sbjct: 24 AGQDDEV---RILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIG 80
Query: 774 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNLFCCA-TILVKNGAE 818
TPLH + G + I+++LL GA NA A I + NG E
Sbjct: 81 ETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 126
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 63/108 (58%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
GQ++ +IL+ NGA +N + G TPL++AA +H +V LL G + TPL
Sbjct: 25 GQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPL 84
Query: 133 HVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 180
H+ +G + +VE+L+ GA++ A+ + G T + +G++++ +IL
Sbjct: 85 HLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 55/91 (60%)
Query: 466 ASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKG 525
A+R G D +L+ +GA V+A K G T LH++A E+ +L ++GA + A G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIG 80
Query: 526 FTPLHLAAKYGRMKIAQMLLQKDAPVDSQGK 556
TPLHL A YG ++I ++LL+ A V++Q K
Sbjct: 81 ETPLHLVAMYGHLEIVEVLLKHGADVNAQDK 111
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 57/112 (50%)
Query: 553 SQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPL 612
Q IL +GA + A K G TPLHLAA ++I ++LL+ A V++ G TPL
Sbjct: 25 GQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPL 84
Query: 613 HVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYN 664
H+ + Y H + +LL GA +A K G T I+ D+A L + N
Sbjct: 85 HLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 55/100 (55%)
Query: 626 LLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEG 685
+L+ GA +A K G TPLH+AA + ++I LL+ A NA G TPLHL A G
Sbjct: 32 ILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYG 91
Query: 686 HTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATI 725
H ++ +L++HGA V+ Q K G T + ++A I
Sbjct: 92 HLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEI 131
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 57/101 (56%)
Query: 168 AARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDY 227
AAR+G D+ + IL+ GA + ++ K GL PLH+A+ DH VL+ +GA V+ I
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIG 80
Query: 228 LTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIAC 268
T LH+ + GH+ + + LL AD NA+ G T I+
Sbjct: 81 ETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 121
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 56/100 (56%)
Query: 308 ACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRG 367
A + + V +L+ GA + A + GLTPLH+A+ + I LL+ GA + G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIG 80
Query: 368 ETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVA 407
ETPLHL A +IV +LL++GA V+A+ + +T ++
Sbjct: 81 ETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 58/112 (51%)
Query: 648 AAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNG 707
AA+ Q D L+ A NAE K G TPLHL+A H ++ +L+++GA V+ G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIG 80
Query: 708 LTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYL 759
TPLHL A + + + + +GA+++ K G T I+ G ++ L
Sbjct: 81 ETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 61/127 (48%), Gaps = 26/127 (20%)
Query: 352 FLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLR 411
L+ GA + G TPLHLAA + +IV +LL+NGA V+A
Sbjct: 32 ILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNA---------------- 75
Query: 412 RFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGN 471
GETPLHL A +IV +LL++GA V+A+ + +T ++ GN
Sbjct: 76 ----------IDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 125
Query: 472 GDIASLL 478
D+A +L
Sbjct: 126 EDLAEIL 132
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 52/102 (50%)
Query: 285 KTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFM 344
+ L+ AD NA G TPLH+A + ++VE+LLK GA + A G TPLH+ +
Sbjct: 31 RILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMY 90
Query: 345 GCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRIL 386
G + I LL+ GA + G+T ++ D+ IL
Sbjct: 91 GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 62/112 (55%)
Query: 135 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNG 194
A + G+ V +L++ GA++ A+ + GLTPLH AA + H ++++L++ GA + + G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIG 80
Query: 195 LAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTL 246
PLH+ + H VL+ HGA V+ TA ++ G+ +A+ L
Sbjct: 81 ETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 60/115 (52%)
Query: 99 LYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKT 158
L AA+ D VR L++ G + + +TPLH+A + +VE+L+ GA++ A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAID 77
Query: 159 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVL 213
G TPLH A GH ++++L++ GA + ++ K G ++ +E +L
Sbjct: 78 AIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 57/120 (47%), Gaps = 8/120 (6%)
Query: 234 ASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKAD 293
A+ G + L+ AD NA G TPLH+A + H+ + + LL AD
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMND--------HLEIVEVLLKNGAD 72
Query: 294 PNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFL 353
NA G TPLH+ ++VE+LLK+GA + A + G T ++ G ++A L
Sbjct: 73 VNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 8/122 (6%)
Query: 201 ASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNG 260
A++ + R+L+ +GA V+ LT LH+A+ H+ + + LL AD NA G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIG 80
Query: 261 FTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELL 320
TPLH+ H+ + + LL AD NA+ G T I+ + E+L
Sbjct: 81 ETPLHLVAM--------YGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Query: 321 LK 322
K
Sbjct: 133 QK 134
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 13/93 (13%)
Query: 747 ASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNAT---- 802
A+ GQ + VR L+ NGA+VNA +G TPLH A+ + I+++LL GA NA
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIG 80
Query: 803 -TNLFCCAT--------ILVKNGAEIDPVTKLS 826
T L A +L+K+GA+++ K
Sbjct: 81 ETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFG 113
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 64/91 (70%)
Query: 426 GETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASV 485
G TPLHLAAR ++V++LL GA V+A+ + +TPLH+A+R G+ ++ LLL+ GA V
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 486 DAPTKDGYTALHISAKEGQDEVASILTESGA 516
+A K+G T LH++A+ G EV +L E+GA
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 85.9 bits (211), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 63/90 (70%)
Query: 460 QTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASIT 519
+TPLH+A+R G+ ++ LLL+ GA V+A K+G T LH++A+ G EV +L E+GA +
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 520 ATTKKGFTPLHLAAKYGRMKIAQMLLQKDA 549
A K G TPLHLAA+ G +++ ++LL+ A
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 60/92 (65%)
Query: 607 NGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAK 666
NG TPLH+A+ H V LLL+ GA +A KNG TPLH+AA+ +++ LLE A
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 667 PNAESKAGFTPLHLSAQEGHTDMSSLLIEHGA 698
NA+ K G TPLHL+A+ GH ++ LL+E GA
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 62/89 (69%)
Query: 130 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 189
TPLH+A + G + +V+LL+ GA++ AK ++G TPLH AAR+GH V+ +L+E GA + +
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 190 KTKNGLAPLHMASQGDHEAATRVLIYHGA 218
K KNG PLH+A++ H ++L+ GA
Sbjct: 64 KDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 59/92 (64%)
Query: 640 NGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGAT 699
NG TPLH+AA+ +++ LLE A NA+ K G TPLHL+A+ GH ++ LL+E GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 700 VSHQAKNGLTPLHLCAQEDKVNVATITMFNGA 731
V+ + KNG TPLHL A+ + V + + GA
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 83.2 bits (204), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 61/91 (67%)
Query: 575 GFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASP 634
G TPLHLAA+ G +++ ++LL+ A V+++ KNG TPLH+A+ H V LLL+ GA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 635 HAVAKNGYTPLHIAAKKNQMDIATTLLEYNA 665
+A KNG TPLH+AA+ +++ LLE A
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 82.8 bits (203), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 62/92 (67%)
Query: 94 NGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGAN 153
NG TPL++AA+ H VV+ LL G + ++ TPLH+A + G + +V+LL+ GA+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 154 IEAKTRDGLTPLHCAARSGHDNVIDILIEKGA 185
+ AK ++G TPLH AAR+GH V+ +L+E GA
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 60/91 (65%)
Query: 674 GFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEI 733
G TPLHL+A+ GH ++ LL+E GA V+ + KNG TPLHL A+ + V + + GA++
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 734 DPVTKAGFTPLHIASHFGQLNMVRYLVENGA 764
+ K G TPLH+A+ G L +V+ L+E GA
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 64/109 (58%), Gaps = 17/109 (15%)
Query: 491 DGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAP 550
+G T LH++A+ G EV +L E+GA + A K G TPLHLAA+ G +++ ++LL
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL----- 55
Query: 551 VDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDA 599
E+GA + A K G TPLHLAA+ G +++ ++LL+ A
Sbjct: 56 ------------EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 65/108 (60%), Gaps = 17/108 (15%)
Query: 525 GFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAK 584
G TPLHLAA+ G +++ ++LL E+GA + A K G TPLHLAA+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLL-----------------EAGADVNAKDKNGRTPLHLAAR 44
Query: 585 YGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGA 632
G +++ ++LL+ A V+++ KNG TPLH+A+ H V LLL+ GA
Sbjct: 45 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 59/92 (64%)
Query: 300 NGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAA 359
NG TPLH+A + +VV+LLL+ GA + A ++G TPLH+A+ G + + LL+AGA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 360 PDTATVRGETPLHLAARANQTDIVRILLRNGA 391
+ G TPLHLAAR ++V++LL GA
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 79.3 bits (194), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 59/92 (64%)
Query: 706 NGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGAN 765
NG TPLHL A+ + V + + GA+++ K G TPLH+A+ G L +V+ L+E GA+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 766 VNATTNLGYTPLHQASQQGRVLIIDLLLGAGA 797
VNA G TPLH A++ G + ++ LLL AGA
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 61/100 (61%), Gaps = 8/100 (8%)
Query: 259 NGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVE 318
NG TPLH+A + H+ V K LL+ AD NA+ NG TPLH+A + +VV+
Sbjct: 1 NGRTPLHLAARNG--------HLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK 52
Query: 319 LLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGA 358
LLL+ GA + A ++G TPLH+A+ G + + LL+AGA
Sbjct: 53 LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 57/89 (64%)
Query: 160 DGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAG 219
+G TPLH AAR+GH V+ +L+E GA + +K KNG PLH+A++ H ++L+ GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 220 VDEITVDYLTALHVASHCGHVRVAKTLLD 248
V+ + T LH+A+ GH+ V K LL+
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 51/77 (66%)
Query: 333 SGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGAS 392
+G TPLH+A+ G + + LL+AGA + G TPLHLAAR ++V++LL GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 393 VDARAREDQTPLHVASR 409
V+A+ + +TPLH+A+R
Sbjct: 61 VNAKDKNGRTPLHLAAR 77
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 72 TGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITP 131
G EV K+L++ GA +N + NG TPL++AA+ H VV+ LL G + ++ TP
Sbjct: 12 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP 71
Query: 132 LHVACKWGKVAMVELLISKGA 152
LH+A + G + +V+LL+ GA
Sbjct: 72 LHLAARNGHLEVVKLLLEAGA 92
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 54/97 (55%), Gaps = 8/97 (8%)
Query: 193 NGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKAD 252
NG PLH+A++ H ++L+ GA V+ + T LH+A+ GH+ V K LL+ AD
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 253 PNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLD 289
NA+ NG TPLH+A + H+ V K LL+
Sbjct: 61 VNAKDKNGRTPLHLAARN--------GHLEVVKLLLE 89
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 42/62 (67%)
Query: 740 GFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP 799
G TPLH+A+ G L +V+ L+E GA+VNA G TPLH A++ G + ++ LLL AGA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 800 NA 801
NA
Sbjct: 62 NA 63
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 78/250 (31%), Positives = 114/250 (45%), Gaps = 8/250 (3%)
Query: 515 GASITATTKKGFTPLHLAA-KYGRMKIAQMLLQKDAPVDSQGKVASILTESGASI-TATT 572
G + GFTPL +A+ G ++ ++DAP V S GAS+ T
Sbjct: 1 GMDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPA-----VISDFIYQGASLHNQTD 55
Query: 573 KKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNV-ALLLLDRG 631
+ G T LHLAA+Y R A+ LL+ A + Q G TPLH A D Q V +L+ +R
Sbjct: 56 RTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 115
Query: 632 ASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSS 691
A +G TPL +AA+ + L+ +A NA G + LH +A + D +
Sbjct: 116 TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAV 175
Query: 692 LLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFG 751
+L+++GA Q TPL L A+E A + + + A D P IA
Sbjct: 176 VLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERM 235
Query: 752 QLNMVRYLVE 761
++VR L E
Sbjct: 236 HHDIVRLLDE 245
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 116/256 (45%), Gaps = 50/256 (19%)
Query: 293 DPNARALNGFTPLHIA-CKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAI 351
D N R +GFTPL IA C G + E P ++ F
Sbjct: 3 DVNVRGPDGFTPLMIASCSGG-----------GLETGNSEEEEDAPAVISDF-------- 43
Query: 352 FLLQAGAAPDTATVR-GETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRL 410
+ GA+ T R GET LHLAAR +++D + LL AS DA +++
Sbjct: 44 --IYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE--ASADANIQDNM--------- 90
Query: 411 RRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGAS-VDARAREDQTPLHVASRL 469
G TPLH A A+ + +IL+RN A+ +DAR + TPL +A+RL
Sbjct: 91 ---------------GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL 135
Query: 470 GNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPL 529
+ L+ A V+A G +ALH +A + A +L ++GA+ + TPL
Sbjct: 136 AVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPL 195
Query: 530 HLAAKYGRMKIAQMLL 545
LAA+ G + A++LL
Sbjct: 196 FLAAREGSYETAKVLL 211
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 116/259 (44%), Gaps = 30/259 (11%)
Query: 151 GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAAT 210
G ++ + DG TPL A+ SG GL + + D A
Sbjct: 1 GMDVNVRGPDGFTPLMIASCSG--------------------GGLETGNSEEEEDAPAVI 40
Query: 211 RVLIYHGAGV-DEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACK 269
IY GA + ++ TALH+A+ AK LL+ AD N + G TPLH A
Sbjct: 41 SDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVS 100
Query: 270 KNRYKSSHCNHVWVAKTLL-DRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIA 328
+ V + L+ +R D +AR +G TPL +A + ++E L+ A +
Sbjct: 101 ADAQG--------VFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN 152
Query: 329 ATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLR 388
A + G + LH A+ + ++ A+ LL+ GA D R ETPL LAAR + ++LL
Sbjct: 153 AVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLD 212
Query: 389 NGASVDARAREDQTPLHVA 407
+ A+ D D+ P +A
Sbjct: 213 HFANRDITDHMDRLPRDIA 231
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 114/269 (42%), Gaps = 30/269 (11%)
Query: 449 GASVDARAREDQTPLHVASRLGNG-------------DIASLLLQHGASVDAPT-KDGYT 494
G V+ R + TPL +AS G G + S + GAS+ T + G T
Sbjct: 1 GMDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGET 60
Query: 495 ALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQ 554
ALH++A+ + + A L E+ A G TPLH A D+Q
Sbjct: 61 ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVS----------------ADAQ 104
Query: 555 GKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHV 614
G ++ + A G TPL LAA+ + + L+ A V++ G + LH
Sbjct: 105 GVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHW 164
Query: 615 ASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAG 674
A+ ++ + A++LL GA+ TPL +AA++ + A LL++ A +
Sbjct: 165 AAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMD 224
Query: 675 FTPLHLSAQEGHTDMSSLLIEHGATVSHQ 703
P ++ + H D+ LL E+ S Q
Sbjct: 225 RLPRDIAQERMHHDIVRLLDEYNLVRSPQ 253
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 113/251 (45%), Gaps = 38/251 (15%)
Query: 565 GASITATTKKGFTPLHLAA-KYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNV 623
G + GFTPL +A+ G ++ ++DAP V S + +Q
Sbjct: 1 GMDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPA------------VISDFIYQ-- 46
Query: 624 ALLLLDRGASPH-AVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSA 682
GAS H + G T LH+AA+ ++ D A LLE +A N + G TPLH +
Sbjct: 47 -------GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 99
Query: 683 QEGHTDMSSLLIEHGAT-VSHQAKNGLTPLHLCAQ-------EDKVNVATITMFNGAEID 734
+ +LI + AT + + +G TPL L A+ ED +N + A+++
Sbjct: 100 SADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN-------SHADVN 152
Query: 735 PVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLG 794
V G + LH A+ ++ L++NGAN + N TPL A+++G +LL
Sbjct: 153 AVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLD 212
Query: 795 AGAQPNATTNL 805
A + T ++
Sbjct: 213 HFANRDITDHM 223
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 115/256 (44%), Gaps = 27/256 (10%)
Query: 85 GATINVQSLNGFTPLYMAA-------------QENHDGVVRYLLSKGG---NQTLATEHN 128
G +NV+ +GFTPL +A+ +E+ V+ + +G NQT T
Sbjct: 1 GMDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGE- 59
Query: 129 ITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAA-L 187
T LH+A ++ + + L+ A+ + G TPLH A + V ILI A L
Sbjct: 60 -TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL 118
Query: 188 YSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLL 247
++ +G PL +A++ E LI A V+ + +ALH A+ +V A LL
Sbjct: 119 DARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLL 178
Query: 248 DRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHI 307
A+ + + TPL +A ++ Y++ AK LLD A+ + P I
Sbjct: 179 KNGANKDMQNNREETPLFLAAREGSYET--------AKVLLDHFANRDITDHMDRLPRDI 230
Query: 308 ACKKNRYKVVELLLKY 323
A ++ + +V LL +Y
Sbjct: 231 AQERMHHDIVRLLDEY 246
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 86/190 (45%), Gaps = 20/190 (10%)
Query: 640 NGYTPLHIAA----------KKNQMD----IATTLLEYNAKPNAESKAGFTPLHLSAQEG 685
+G+TPL IA+ + + D I+ + + + N + G T LHL+A+
Sbjct: 10 DGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYS 69
Query: 686 HTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGA-EIDPVTKAGFTPL 744
+D + L+E A + Q G TPLH D V I + N A ++D G TPL
Sbjct: 70 RSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL 129
Query: 745 HIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTN 804
+A+ M+ L+ + A+VNA +LG + LH A+ V +LL GA + N
Sbjct: 130 ILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNN 189
Query: 805 -----LFCCA 809
LF A
Sbjct: 190 REETPLFLAA 199
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 90/184 (48%), Gaps = 5/184 (2%)
Query: 74 QEEVAKILVD---NGATINVQS-LNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNI 129
+E+ ++ D GA+++ Q+ G T L++AA+ + + LL + +
Sbjct: 33 EEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGR 92
Query: 130 TPLHVACKWGKVAMVELLI-SKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALY 188
TPLH A + ++LI ++ +++A+ DG TPL AAR + +++ LI A +
Sbjct: 93 TPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN 152
Query: 189 SKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLD 248
+ G + LH A+ ++ A VL+ +GA D T L +A+ G AK LLD
Sbjct: 153 AVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLD 212
Query: 249 RKAD 252
A+
Sbjct: 213 HFAN 216
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 74/150 (49%), Gaps = 3/150 (2%)
Query: 74 QEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHN-ITPL 132
+ + AK L++ A N+Q G TPL+ A + GV + L+ A H+ TPL
Sbjct: 70 RSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL 129
Query: 133 HVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTK 192
+A + M+E LI+ A++ A G + LH AA + + +L++ GA +
Sbjct: 130 ILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNN 189
Query: 193 NGLAPLHMAS-QGDHEAATRVLIYHGAGVD 221
PL +A+ +G +E A +VL+ H A D
Sbjct: 190 REETPLFLAAREGSYETA-KVLLDHFANRD 218
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 47/108 (43%)
Query: 75 EEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHV 134
E + + L+++ A +N G + L+ AA N+ LL G N+ + TPL +
Sbjct: 138 EGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFL 197
Query: 135 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIE 182
A + G ++L+ AN + P A H +++ +L E
Sbjct: 198 AAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDE 245
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 111/238 (46%), Gaps = 8/238 (3%)
Query: 525 GFTPLHLAA-KYGRMKIAQMLLQKDAPVDSQGKVASILTESGASI-TATTKKGFTPLHLA 582
GFTPL +A+ G ++ ++DAP V S GAS+ T + G T LHLA
Sbjct: 10 GFTPLMIASCSGGGLETGNSEEEEDAPA-----VISDFIYQGASLHNQTDRTGETALHLA 64
Query: 583 AKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNV-ALLLLDRGASPHAVAKNG 641
A+Y R A+ LL+ A + Q G TPLH A D Q V +L+ +R A +G
Sbjct: 65 ARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDG 124
Query: 642 YTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVS 701
TPL +AA+ + L+ +A NA G + LH +A + D + +L+++GA
Sbjct: 125 TTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD 184
Query: 702 HQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYL 759
Q TPL L A+E A + + + A D P IA ++VR L
Sbjct: 185 MQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 79/257 (30%), Positives = 116/257 (45%), Gaps = 50/257 (19%)
Query: 293 DPNARALNGFTPLHIA-CKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAI 351
D N R +GFTPL IA C G + E P ++ F
Sbjct: 2 DVNVRGPDGFTPLMIASCSGG-----------GLETGNSEEEEDAPAVISDF-------- 42
Query: 352 FLLQAGAAPDTATVR-GETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRL 410
+ GA+ T R GET LHLAAR +++D + LL AS DA +++
Sbjct: 43 --IYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE--ASADANIQDNM--------- 89
Query: 411 RRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGAS-VDARAREDQTPLHVASRL 469
G TPLH A A+ + +IL+RN A+ +DAR + TPL +A+RL
Sbjct: 90 ---------------GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL 134
Query: 470 GNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPL 529
+ L+ A V+A G +ALH +A + A +L ++GA+ + TPL
Sbjct: 135 AVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPL 194
Query: 530 HLAAKYGRMKIAQMLLQ 546
LAA+ G + A++LL
Sbjct: 195 FLAAREGSYETAKVLLD 211
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 115/257 (44%), Gaps = 30/257 (11%)
Query: 153 NIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRV 212
++ + DG TPL A+ SG GL + + D A
Sbjct: 2 DVNVRGPDGFTPLMIASCSG--------------------GGLETGNSEEEEDAPAVISD 41
Query: 213 LIYHGAGV-DEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKN 271
IY GA + ++ TALH+A+ AK LL+ AD N + G TPLH A +
Sbjct: 42 FIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSAD 101
Query: 272 RYKSSHCNHVWVAKTLL-DRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAAT 330
V + L+ +R D +AR +G TPL +A + ++E L+ A + A
Sbjct: 102 AQG--------VFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV 153
Query: 331 TESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNG 390
+ G + LH A+ + ++ A+ LL+ GA D R ETPL LAAR + ++LL +
Sbjct: 154 DDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHF 213
Query: 391 ASVDARAREDQTPLHVA 407
A+ D D+ P +A
Sbjct: 214 ANRDITDHMDRLPRDIA 230
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 106/227 (46%), Gaps = 29/227 (12%)
Query: 601 VDSQGKNGVTPLHVAS-------------HYDHQNVALLLLDRGASPH-AVAKNGYTPLH 646
V+ +G +G TPL +AS D V + +GAS H + G T LH
Sbjct: 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALH 62
Query: 647 IAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGAT-VSHQAK 705
+AA+ ++ D A LLE +A N + G TPLH + + +LI + AT + +
Sbjct: 63 LAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH 122
Query: 706 NGLTPLHLCAQ-------EDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRY 758
+G TPL L A+ ED +N + A+++ V G + LH A+ ++
Sbjct: 123 DGTTPLILAARLAVEGMLEDLIN-------SHADVNAVDDLGKSALHWAAAVNNVDAAVV 175
Query: 759 LVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNL 805
L++NGAN + N TPL A+++G +LL A + T ++
Sbjct: 176 LLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHM 222
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 86/190 (45%), Gaps = 20/190 (10%)
Query: 640 NGYTPLHIAA----------KKNQMD----IATTLLEYNAKPNAESKAGFTPLHLSAQEG 685
+G+TPL IA+ + + D I+ + + + N + G T LHL+A+
Sbjct: 9 DGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYS 68
Query: 686 HTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGA-EIDPVTKAGFTPL 744
+D + L+E A + Q G TPLH D V I + N A ++D G TPL
Sbjct: 69 RSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL 128
Query: 745 HIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTN 804
+A+ M+ L+ + A+VNA +LG + LH A+ V +LL GA + N
Sbjct: 129 ILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNN 188
Query: 805 -----LFCCA 809
LF A
Sbjct: 189 REETPLFLAA 198
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 112/250 (44%), Gaps = 27/250 (10%)
Query: 88 INVQSLNGFTPLYMAA-------------QENHDGVVRYLLSKGG---NQTLATEHNITP 131
+NV+ +GFTPL +A+ +E+ V+ + +G NQT T T
Sbjct: 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGE--TA 60
Query: 132 LHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAA-LYSK 190
LH+A ++ + + L+ A+ + G TPLH A + V ILI A L ++
Sbjct: 61 LHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR 120
Query: 191 TKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRK 250
+G PL +A++ E LI A V+ + +ALH A+ +V A LL
Sbjct: 121 MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG 180
Query: 251 ADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACK 310
A+ + + TPL +A ++ Y++ AK LLD A+ + P IA +
Sbjct: 181 ANKDMQNNREETPLFLAAREGSYET--------AKVLLDHFANRDITDHMDRLPRDIAQE 232
Query: 311 KNRYKVVELL 320
+ + +V LL
Sbjct: 233 RMHHDIVRLL 242
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 90/184 (48%), Gaps = 5/184 (2%)
Query: 74 QEEVAKILVD---NGATINVQS-LNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNI 129
+E+ ++ D GA+++ Q+ G T L++AA+ + + LL + +
Sbjct: 32 EEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGR 91
Query: 130 TPLHVACKWGKVAMVELLI-SKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALY 188
TPLH A + ++LI ++ +++A+ DG TPL AAR + +++ LI A +
Sbjct: 92 TPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN 151
Query: 189 SKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLD 248
+ G + LH A+ ++ A VL+ +GA D T L +A+ G AK LLD
Sbjct: 152 AVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLD 211
Query: 249 RKAD 252
A+
Sbjct: 212 HFAN 215
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 74/150 (49%), Gaps = 3/150 (2%)
Query: 74 QEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHN-ITPL 132
+ + AK L++ A N+Q G TPL+ A + GV + L+ A H+ TPL
Sbjct: 69 RSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL 128
Query: 133 HVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTK 192
+A + M+E LI+ A++ A G + LH AA + + +L++ GA +
Sbjct: 129 ILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNN 188
Query: 193 NGLAPLHMAS-QGDHEAATRVLIYHGAGVD 221
PL +A+ +G +E A +VL+ H A D
Sbjct: 189 REETPLFLAAREGSYETA-KVLLDHFANRD 217
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%)
Query: 81 LVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGK 140
L+ NGA ++Q+ TPL++AA+E + LL N+ + + P +A +
Sbjct: 176 LLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH 235
Query: 141 VAMVELL 147
+V LL
Sbjct: 236 HDIVRLL 242
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 71/138 (51%), Gaps = 26/138 (18%)
Query: 374 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLA 433
AARA Q D VRIL NGA V+A G TPLHLA
Sbjct: 21 AARAGQDDEVRILTANGADVNA--------------------------NDYWGHTPLHLA 54
Query: 434 ARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGY 493
A +IV +LL+NGA V+A +TPLH+A+ + +I +LL+HGA V+A K G
Sbjct: 55 AMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGK 114
Query: 494 TALHISAKEGQDEVASIL 511
TA IS G +++A IL
Sbjct: 115 TAFDISIDNGNEDLAEIL 132
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 65/112 (58%)
Query: 433 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDG 492
AARA Q D VRIL NGA V+A TPLH+A+ LG+ +I +LL++GA V+A G
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTG 80
Query: 493 YTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
T LH++A E+ +L + GA + A K G T ++ G +A++L
Sbjct: 81 RTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 71/129 (55%), Gaps = 17/129 (13%)
Query: 499 SAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVA 558
+A+ GQD+ ILT +GA + A G TPLHLAA G ++I ++LL+
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLK------------ 68
Query: 559 SILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHY 618
+GA + AT G TPLHLAA ++I ++LL+ A V++Q K G T ++
Sbjct: 69 -----NGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDN 123
Query: 619 DHQNVALLL 627
++++A +L
Sbjct: 124 GNEDLAEIL 132
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 58/108 (53%)
Query: 553 SQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPL 612
Q ILT +GA + A G TPLHLAA G ++I ++LL+ A V++ G G TPL
Sbjct: 25 GQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPL 84
Query: 613 HVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTL 660
H+A+ DH + +LL GA +A K G T I+ D+A L
Sbjct: 85 HLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 61/106 (57%), Gaps = 4/106 (3%)
Query: 714 CAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 773
Q+D+V + T NGA+++ G TPLH+A+ G L +V L++NGA+VNAT N G
Sbjct: 24 AGQDDEVRILTA---NGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTG 80
Query: 774 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNLFCCA-TILVKNGAE 818
TPLH A+ + I+++LL GA NA A I + NG E
Sbjct: 81 RTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 126
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 61/112 (54%)
Query: 582 AAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNG 641
AA+ G+ ++L A V++ G TPLH+A+ H + +LL GA +A G
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTG 80
Query: 642 YTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLL 693
TPLH+AA + ++I LL++ A NA+ K G T +S G+ D++ +L
Sbjct: 81 RTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 57/100 (57%)
Query: 308 ACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRG 367
A + + V +L GA + A G TPLH+A+ +G + I LL+ GA + G
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTG 80
Query: 368 ETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVA 407
TPLHLAA A+ +IV +LL++GA V+A+ + +T ++
Sbjct: 81 RTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 55/93 (59%)
Query: 466 ASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKG 525
A+R G D +L +GA V+A G+T LH++A G E+ +L ++GA + AT G
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTG 80
Query: 526 FTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVA 558
TPLHLAA ++I ++LL+ A V++Q K
Sbjct: 81 RTPLHLAAWADHLEIVEVLLKHGADVNAQDKFG 113
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 57/112 (50%)
Query: 648 AAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNG 707
AA+ Q D L A NA G TPLHL+A GH ++ +L+++GA V+ G
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTG 80
Query: 708 LTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYL 759
TPLHL A D + + + + +GA+++ K G T I+ G ++ L
Sbjct: 81 RTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 59/108 (54%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
GQ++ +IL NGA +N G TPL++AA H +V LL G + TPL
Sbjct: 25 GQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPL 84
Query: 133 HVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 180
H+A + +VE+L+ GA++ A+ + G T + +G++++ +IL
Sbjct: 85 HLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 51/95 (53%)
Query: 292 ADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAI 351
AD NA G TPLH+A ++VE+LLK GA + AT +G TPLH+A++ + I
Sbjct: 38 ADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVE 97
Query: 352 FLLQAGAAPDTATVRGETPLHLAARANQTDIVRIL 386
LL+ GA + G+T ++ D+ IL
Sbjct: 98 VLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 60/112 (53%)
Query: 135 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNG 194
A + G+ V +L + GA++ A G TPLH AA GH ++++L++ GA + + G
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTG 80
Query: 195 LAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTL 246
PLH+A+ DH VL+ HGA V+ TA ++ G+ +A+ L
Sbjct: 81 RTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 53/100 (53%)
Query: 626 LLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEG 685
+L GA +A G+TPLH+AA ++I LL+ A NA G TPLHL+A
Sbjct: 32 ILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWAD 91
Query: 686 HTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATI 725
H ++ +L++HGA V+ Q K G T + ++A I
Sbjct: 92 HLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEI 131
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 58/112 (51%)
Query: 681 SAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAG 740
+A+ G D +L +GA V+ G TPLHL A + + + + NGA+++ G
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTG 80
Query: 741 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLL 792
TPLH+A+ L +V L+++GA+VNA G T + G + ++L
Sbjct: 81 RTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 59/115 (51%)
Query: 99 LYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKT 158
L AA+ D VR L + G + TPLH+A G + +VE+L+ GA++ A
Sbjct: 18 LLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG 77
Query: 159 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVL 213
G TPLH AA + H ++++L++ GA + ++ K G ++ +E +L
Sbjct: 78 NTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 57/120 (47%), Gaps = 8/120 (6%)
Query: 234 ASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKAD 293
A+ G + L AD NA G TPLH+A H+ + + LL AD
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAM--------LGHLEIVEVLLKNGAD 72
Query: 294 PNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFL 353
NA G TPLH+A + ++VE+LLK+GA + A + G T ++ G ++A L
Sbjct: 73 VNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 60/124 (48%), Gaps = 12/124 (9%)
Query: 201 ASQGDHEAATRVLIYHGAGVDEITVDYL--TALHVASHCGHVRVAKTLLDRKADPNARAL 258
A++ + R+L +GA V+ DY T LH+A+ GH+ + + LL AD NA
Sbjct: 21 AARAGQDDEVRILTANGADVN--ANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGN 78
Query: 259 NGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVE 318
G TPLH+A + +H+ + + LL AD NA+ G T I+ + E
Sbjct: 79 TGRTPLHLA--------AWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAE 130
Query: 319 LLLK 322
+L K
Sbjct: 131 ILQK 134
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 13/93 (13%)
Query: 747 ASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNL- 805
A+ GQ + VR L NGA+VNA G+TPLH A+ G + I+++LL GA NAT N
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTG 80
Query: 806 ------------FCCATILVKNGAEIDPVTKLS 826
+L+K+GA+++ K
Sbjct: 81 RTPLHLAAWADHLEIVEVLLKHGADVNAQDKFG 113
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 51/101 (50%)
Query: 168 AARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDY 227
AAR+G D+ + IL GA + + G PLH+A+ H VL+ +GA V+
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTG 80
Query: 228 LTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIAC 268
T LH+A+ H+ + + LL AD NA+ G T I+
Sbjct: 81 RTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISI 121
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 69/112 (61%)
Query: 433 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDG 492
AARA Q D VRIL+ NGA V+A + TPLH+A++LG+ +I +LL++GA V+A G
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFG 80
Query: 493 YTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
T LH++A G E+ +L + GA + A K G T ++ G +A++L
Sbjct: 81 ITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 82.8 bits (203), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 73/138 (52%), Gaps = 26/138 (18%)
Query: 374 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLA 433
AARA Q D VRIL+ NGA V+A + G TPLHLA
Sbjct: 21 AARAGQDDEVRILMANGADVNALDED--------------------------GLTPLHLA 54
Query: 434 ARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGY 493
A+ +IV +LL+ GA V+A TPLH+A+ G+ +I +LL+HGA V+A K G
Sbjct: 55 AQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGK 114
Query: 494 TALHISAKEGQDEVASIL 511
TA IS G +++A IL
Sbjct: 115 TAFDISIDNGNEDLAEIL 132
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 71/129 (55%), Gaps = 17/129 (13%)
Query: 499 SAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVA 558
+A+ GQD+ IL +GA + A + G TPLHLAA+ G ++I ++LL+
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLK------------ 68
Query: 559 SILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHY 618
GA + A G TPLHLAA G ++I ++LL+ A V++Q K G T ++
Sbjct: 69 -----YGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDN 123
Query: 619 DHQNVALLL 627
++++A +L
Sbjct: 124 GNEDLAEIL 132
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 60/100 (60%)
Query: 626 LLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEG 685
+L+ GA +A+ ++G TPLH+AA+ ++I LL+Y A NAE G TPLHL+A G
Sbjct: 32 ILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRG 91
Query: 686 HTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATI 725
H ++ +L++HGA V+ Q K G T + ++A I
Sbjct: 92 HLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEI 131
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 63/106 (59%), Gaps = 4/106 (3%)
Query: 714 CAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 773
Q+D+V I M NGA+++ + + G TPLH+A+ G L +V L++ GA+VNA N G
Sbjct: 24 AGQDDEV---RILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFG 80
Query: 774 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNLFCCA-TILVKNGAE 818
TPLH A+ +G + I+++LL GA NA A I + NG E
Sbjct: 81 ITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 126
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 64/108 (59%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
GQ++ +IL+ NGA +N +G TPL++AAQ H +V LL G + ITPL
Sbjct: 25 GQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPL 84
Query: 133 HVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 180
H+A G + +VE+L+ GA++ A+ + G T + +G++++ +IL
Sbjct: 85 HLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 61/112 (54%)
Query: 553 SQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPL 612
Q IL +GA + A + G TPLHLAA+ G ++I ++LL+ A V+++ G+TPL
Sbjct: 25 GQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPL 84
Query: 613 HVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYN 664
H+A+ H + +LL GA +A K G T I+ D+A L + N
Sbjct: 85 HLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 65/112 (58%)
Query: 582 AAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNG 641
AA+ G+ ++L+ A V++ ++G+TPLH+A+ H + +LL GA +A G
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFG 80
Query: 642 YTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLL 693
TPLH+AA + ++I LL++ A NA+ K G T +S G+ D++ +L
Sbjct: 81 ITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 65/115 (56%)
Query: 99 LYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKT 158
L AA+ D VR L++ G + E +TPLH+A + G + +VE+L+ GA++ A+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAED 77
Query: 159 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVL 213
G+TPLH AA GH ++++L++ GA + ++ K G ++ +E +L
Sbjct: 78 NFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 57/93 (61%)
Query: 466 ASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKG 525
A+R G D +L+ +GA V+A +DG T LH++A+ G E+ +L + GA + A G
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFG 80
Query: 526 FTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVA 558
TPLHLAA G ++I ++LL+ A V++Q K
Sbjct: 81 ITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFG 113
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 56/102 (54%)
Query: 285 KTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFM 344
+ L+ AD NA +G TPLH+A + ++VE+LLKYGA + A G+TPLH+A+
Sbjct: 31 RILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIR 90
Query: 345 GCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRIL 386
G + I LL+ GA + G+T ++ D+ IL
Sbjct: 91 GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 59/104 (56%)
Query: 681 SAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAG 740
+A+ G D +L+ +GA V+ ++GLTPLHL AQ + + + + GA+++ G
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFG 80
Query: 741 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQG 784
TPLH+A+ G L +V L+++GA+VNA G T + G
Sbjct: 81 ITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNG 124
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 65/112 (58%)
Query: 135 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNG 194
A + G+ V +L++ GA++ A DGLTPLH AA+ GH ++++L++ GA + ++ G
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFG 80
Query: 195 LAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTL 246
+ PLH+A+ H VL+ HGA V+ TA ++ G+ +A+ L
Sbjct: 81 ITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 61/112 (54%)
Query: 648 AAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNG 707
AA+ Q D L+ A NA + G TPLHL+AQ GH ++ +L+++GA V+ + G
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFG 80
Query: 708 LTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYL 759
+TPLHL A + + + + +GA+++ K G T I+ G ++ L
Sbjct: 81 ITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 58/100 (58%)
Query: 308 ACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRG 367
A + + V +L+ GA + A E GLTPLH+A+ +G + I LL+ GA + G
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFG 80
Query: 368 ETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVA 407
TPLHLAA +IV +LL++GA V+A+ + +T ++
Sbjct: 81 ITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 60/120 (50%), Gaps = 8/120 (6%)
Query: 234 ASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKAD 293
A+ G + L+ AD NA +G TPLH+A + H+ + + LL AD
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQ--------LGHLEIVEVLLKYGAD 72
Query: 294 PNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFL 353
NA G TPLH+A + ++VE+LLK+GA + A + G T ++ G ++A L
Sbjct: 73 VNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 8/122 (6%)
Query: 201 ASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNG 260
A++ + R+L+ +GA V+ + D LT LH+A+ GH+ + + LL AD NA G
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFG 80
Query: 261 FTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELL 320
TPLH+A + H+ + + LL AD NA+ G T I+ + E+L
Sbjct: 81 ITPLHLAAIRG--------HLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Query: 321 LK 322
K
Sbjct: 133 QK 134
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 58/101 (57%)
Query: 168 AARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDY 227
AAR+G D+ + IL+ GA + + ++GL PLH+A+Q H VL+ +GA V+
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFG 80
Query: 228 LTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIAC 268
+T LH+A+ GH+ + + LL AD NA+ G T I+
Sbjct: 81 ITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 121
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 62/127 (48%), Gaps = 26/127 (20%)
Query: 352 FLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLR 411
L+ GA + G TPLHLAA+ +IV +LL+ GA V+A ED
Sbjct: 32 ILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNA---EDNF--------- 79
Query: 412 RFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGN 471
G TPLHLAA +IV +LL++GA V+A+ + +T ++ GN
Sbjct: 80 --------------GITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 125
Query: 472 GDIASLL 478
D+A +L
Sbjct: 126 EDLAEIL 132
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 13/93 (13%)
Query: 747 ASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNL- 805
A+ GQ + VR L+ NGA+VNA G TPLH A+Q G + I+++LL GA NA N
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFG 80
Query: 806 ------------FCCATILVKNGAEIDPVTKLS 826
+L+K+GA+++ K
Sbjct: 81 ITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFG 113
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 76/138 (55%), Gaps = 26/138 (18%)
Query: 374 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLA 433
A RA Q D VRIL+ NGA V+A A G TPLHLA
Sbjct: 21 ATRAGQDDEVRILMANGADVNA-----------------MDDA---------GVTPLHLA 54
Query: 434 ARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGY 493
A+ +IV +LL++GA V+AR +TPLH+A+ +G+ +I +LL++GA V+A K G
Sbjct: 55 AKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGK 114
Query: 494 TALHISAKEGQDEVASIL 511
TA IS G +++A IL
Sbjct: 115 TAFDISIDNGNEDLAEIL 132
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 66/112 (58%)
Query: 433 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDG 492
A RA Q D VRIL+ NGA V+A TPLH+A++ G+ +I +LL+HGA V+A G
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWG 80
Query: 493 YTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
T LH++A G E+ +L E GA + A K G T ++ G +A++L
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 69/129 (53%), Gaps = 17/129 (13%)
Query: 499 SAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVA 558
+ + GQD+ IL +GA + A G TPLHLAAK G ++I ++LL+
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK------------ 68
Query: 559 SILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHY 618
GA + A G TPLHLAA G ++I ++LL+ A V++Q K G T ++
Sbjct: 69 -----HGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDN 123
Query: 619 DHQNVALLL 627
++++A +L
Sbjct: 124 GNEDLAEIL 132
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 62/106 (58%), Gaps = 4/106 (3%)
Query: 714 CAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 773
Q+D+V I M NGA+++ + AG TPLH+A+ G L +V L+++GA+VNA G
Sbjct: 24 AGQDDEVR---ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWG 80
Query: 774 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNLFCCA-TILVKNGAE 818
TPLH A+ G + I+++LL GA NA A I + NG E
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNE 126
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 58/100 (58%)
Query: 626 LLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEG 685
+L+ GA +A+ G TPLH+AAK+ ++I LL++ A NA G TPLHL+A G
Sbjct: 32 ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVG 91
Query: 686 HTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATI 725
H ++ +L+E+GA V+ Q K G T + ++A I
Sbjct: 92 HLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEI 131
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 61/112 (54%)
Query: 582 AAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNG 641
A + G+ ++L+ A V++ GVTPLH+A+ H + +LL GA +A G
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWG 80
Query: 642 YTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLL 693
TPLH+AA ++I LLEY A NA+ K G T +S G+ D++ +L
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 60/112 (53%)
Query: 553 SQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPL 612
Q IL +GA + A G TPLHLAAK G ++I ++LL+ A V+++ G TPL
Sbjct: 25 GQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPL 84
Query: 613 HVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYN 664
H+A+ H + +LL+ GA +A K G T I+ D+A L + N
Sbjct: 85 HLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 55/91 (60%)
Query: 466 ASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKG 525
A+R G D +L+ +GA V+A G T LH++AK G E+ +L + GA + A G
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWG 80
Query: 526 FTPLHLAAKYGRMKIAQMLLQKDAPVDSQGK 556
TPLHLAA G ++I ++LL+ A V++Q K
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGADVNAQDK 111
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 63/115 (54%)
Query: 99 LYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKT 158
L A + D VR L++ G + + +TPLH+A K G + +VE+L+ GA++ A+
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARD 77
Query: 159 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVL 213
G TPLH AA GH ++++L+E GA + ++ K G ++ +E +L
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 66/120 (55%), Gaps = 2/120 (1%)
Query: 63 SLSNTKFEAT--GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGN 120
L EAT GQ++ +IL+ NGA +N G TPL++AA+ H +V LL G +
Sbjct: 13 DLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 121 QTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 180
TPLH+A G + +VE+L+ GA++ A+ + G T + +G++++ +IL
Sbjct: 73 VNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 61/120 (50%), Gaps = 8/120 (6%)
Query: 234 ASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKAD 293
A+ G + L+ AD NA G TPLH+A K+ H+ + + LL AD
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRG--------HLEIVEVLLKHGAD 72
Query: 294 PNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFL 353
NAR + G TPLH+A ++VE+LL+YGA + A + G T ++ G ++A L
Sbjct: 73 VNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 56/102 (54%)
Query: 285 KTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFM 344
+ L+ AD NA G TPLH+A K+ ++VE+LLK+GA + A G TPLH+A+ +
Sbjct: 31 RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATV 90
Query: 345 GCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRIL 386
G + I LL+ GA + G+T ++ D+ IL
Sbjct: 91 GHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 57/100 (57%)
Query: 308 ACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRG 367
A + + V +L+ GA + A ++G+TPLH+A+ G + I LL+ GA + + G
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWG 80
Query: 368 ETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVA 407
TPLHLAA +IV +LL GA V+A+ + +T ++
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 54/100 (54%)
Query: 685 GHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPL 744
G D +L+ +GA V+ G+TPLHL A+ + + + + +GA+++ G TPL
Sbjct: 25 GQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPL 84
Query: 745 HIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQG 784
H+A+ G L +V L+E GA+VNA G T + G
Sbjct: 85 HLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNG 124
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 58/112 (51%)
Query: 648 AAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNG 707
A + Q D L+ A NA AG TPLHL+A+ GH ++ +L++HGA V+ + G
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWG 80
Query: 708 LTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYL 759
TPLHL A + + + + GA+++ K G T I+ G ++ L
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 61/127 (48%), Gaps = 26/127 (20%)
Query: 352 FLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLR 411
L+ GA + G TPLHLAA+ +IV +LL++GA V+AR
Sbjct: 32 ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAR--------------- 76
Query: 412 RFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGN 471
+ G TPLHLAA +IV +LL GA V+A+ + +T ++ GN
Sbjct: 77 -----------DIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGN 125
Query: 472 GDIASLL 478
D+A +L
Sbjct: 126 EDLAEIL 132
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 56/101 (55%)
Query: 168 AARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDY 227
A R+G D+ + IL+ GA + + G+ PLH+A++ H VL+ HGA V+ +
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWG 80
Query: 228 LTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIAC 268
T LH+A+ GH+ + + LL+ AD NA+ G T I+
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISI 121
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 8/122 (6%)
Query: 201 ASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNG 260
A++ + R+L+ +GA V+ + +T LH+A+ GH+ + + LL AD NAR + G
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWG 80
Query: 261 FTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELL 320
TPLH+A H+ + + LL+ AD NA+ G T I+ + E+L
Sbjct: 81 RTPLHLAAT--------VGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Query: 321 LK 322
K
Sbjct: 133 QK 134
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 63/112 (56%)
Query: 135 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNG 194
A + G+ V +L++ GA++ A G+TPLH AA+ GH ++++L++ GA + ++ G
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWG 80
Query: 195 LAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTL 246
PLH+A+ H VL+ +GA V+ TA ++ G+ +A+ L
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 13/93 (13%)
Query: 747 ASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNA----- 801
A+ GQ + VR L+ NGA+VNA + G TPLH A+++G + I+++LL GA NA
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWG 80
Query: 802 TTNLFCCAT--------ILVKNGAEIDPVTKLS 826
T L AT +L++ GA+++ K
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGADVNAQDKFG 113
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 74/138 (53%), Gaps = 26/138 (18%)
Query: 374 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLA 433
AARA Q D VRIL+ NGA V+A+ G TPL+LA
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDE--------------------------YGLTPLYLA 54
Query: 434 ARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGY 493
+IV +LL+NGA V+A TPLH+A+ +G+ +IA +LL+HGA V+A K G
Sbjct: 55 TAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGK 114
Query: 494 TALHISAKEGQDEVASIL 511
TA IS G +++A IL
Sbjct: 115 TAFDISIGNGNEDLAEIL 132
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 69/112 (61%)
Query: 433 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDG 492
AARA Q D VRIL+ NGA V+A+ TPL++A+ G+ +I +LL++GA V+A G
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 493 YTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
+T LH++A G E+A +L + GA + A K G T ++ G +A++L
Sbjct: 81 FTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 73/129 (56%), Gaps = 17/129 (13%)
Query: 499 SAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVA 558
+A+ GQD+ IL +GA + A + G TPL+LA +G ++I ++LL+
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLK------------ 68
Query: 559 SILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHY 618
+GA + A GFTPLHLAA G ++IA++LL+ A V++Q K G T ++
Sbjct: 69 -----NGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGN 123
Query: 619 DHQNVALLL 627
++++A +L
Sbjct: 124 GNEDLAEIL 132
Score = 72.4 bits (176), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 68/112 (60%)
Query: 582 AAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNG 641
AA+ G+ ++L+ A V+++ + G+TPL++A+ + H + +LL GA +AV G
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 642 YTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLL 693
+TPLH+AA ++IA LL++ A NA+ K G T +S G+ D++ +L
Sbjct: 81 FTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 57/97 (58%)
Query: 681 SAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAG 740
+A+ G D +L+ +GA V+ + + GLTPL+L + + + + NGA+++ V G
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 741 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPL 777
FTPLH+A+ G L + L+++GA+VNA G T
Sbjct: 81 FTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAF 117
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 62/106 (58%), Gaps = 4/106 (3%)
Query: 714 CAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 773
Q+D+V I M NGA+++ + G TPL++A+ G L +V L++NGA+VNA +G
Sbjct: 24 AGQDDEVR---ILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 774 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNLFCCA-TILVKNGAE 818
+TPLH A+ G + I ++LL GA NA A I + NG E
Sbjct: 81 FTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNE 126
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 57/93 (61%)
Query: 466 ASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKG 525
A+R G D +L+ +GA V+A + G T L+++ G E+ +L ++GA + A G
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 526 FTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVA 558
FTPLHLAA G ++IA++LL+ A V++Q K
Sbjct: 81 FTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFG 113
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 60/108 (55%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
GQ++ +IL+ NGA +N + G TPLY+A H +V LL G + TPL
Sbjct: 25 GQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPL 84
Query: 133 HVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 180
H+A G + + E+L+ GA++ A+ + G T + +G++++ +IL
Sbjct: 85 HLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 56/102 (54%)
Query: 285 KTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFM 344
+ L+ AD NA+ G TPL++A ++VE+LLK GA + A G TPLH+A+F+
Sbjct: 31 RILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFI 90
Query: 345 GCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRIL 386
G + IA LL+ GA + G+T ++ D+ IL
Sbjct: 91 GHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 59/112 (52%)
Query: 553 SQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPL 612
Q IL +GA + A + G TPL+LA +G ++I ++LL+ A V++ G TPL
Sbjct: 25 GQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPL 84
Query: 613 HVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYN 664
H+A+ H +A +LL GA +A K G T I+ D+A L + N
Sbjct: 85 HLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 58/101 (57%)
Query: 168 AARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDY 227
AAR+G D+ + IL+ GA + +K + GL PL++A+ H VL+ +GA V+ +
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 228 LTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIAC 268
T LH+A+ GH+ +A+ LL AD NA+ G T I+
Sbjct: 81 FTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISI 121
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 56/100 (56%)
Query: 626 LLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEG 685
+L+ GA +A + G TPL++A ++I LL+ A NA GFTPLHL+A G
Sbjct: 32 ILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIG 91
Query: 686 HTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATI 725
H +++ +L++HGA V+ Q K G T + ++A I
Sbjct: 92 HLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEI 131
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 62/115 (53%)
Query: 99 LYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKT 158
L AA+ D VR L++ G + E+ +TPL++A G + +VE+L+ GA++ A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD 77
Query: 159 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVL 213
G TPLH AA GH + ++L++ GA + ++ K G ++ +E +L
Sbjct: 78 AIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 56/100 (56%)
Query: 308 ACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRG 367
A + + V +L+ GA + A E GLTPL++A+ G + I LL+ GA + G
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 368 ETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVA 407
TPLHLAA +I +LL++GA V+A+ + +T ++
Sbjct: 81 FTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDIS 120
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 59/112 (52%)
Query: 648 AAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNG 707
AA+ Q D L+ A NA+ + G TPL+L+ GH ++ +L+++GA V+ G
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 708 LTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYL 759
TPLHL A + +A + + +GA+++ K G T I+ G ++ L
Sbjct: 81 FTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 61/112 (54%)
Query: 135 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNG 194
A + G+ V +L++ GA++ AK GLTPL+ A GH ++++L++ GA + + G
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 195 LAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTL 246
PLH+A+ H VL+ HGA V+ TA ++ G+ +A+ L
Sbjct: 81 FTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 8/120 (6%)
Query: 234 ASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKAD 293
A+ G + L+ AD NA+ G TPL++A ++H H+ + + LL AD
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLA-------TAH-GHLEIVEVLLKNGAD 72
Query: 294 PNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFL 353
NA GFTPLH+A ++ E+LLK+GA + A + G T ++ G ++A L
Sbjct: 73 VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 8/122 (6%)
Query: 201 ASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNG 260
A++ + R+L+ +GA V+ LT L++A+ GH+ + + LL AD NA G
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 261 FTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELL 320
FTPLH+A + H+ +A+ LL AD NA+ G T I+ + E+L
Sbjct: 81 FTPLHLA--------AFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Query: 321 LK 322
K
Sbjct: 133 QK 134
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 58/127 (45%), Gaps = 26/127 (20%)
Query: 352 FLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLR 411
L+ GA + G TPL+LA +IV +LL+NGA V+A
Sbjct: 32 ILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNA---------------- 75
Query: 412 RFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGN 471
G TPLHLAA +I +LL++GA V+A+ + +T ++ GN
Sbjct: 76 ----------VDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGN 125
Query: 472 GDIASLL 478
D+A +L
Sbjct: 126 EDLAEIL 132
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 13/93 (13%)
Query: 747 ASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNL- 805
A+ GQ + VR L+ NGA+VNA G TPL+ A+ G + I+++LL GA NA +
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 806 ------------FCCATILVKNGAEIDPVTKLS 826
A +L+K+GA+++ K
Sbjct: 81 FTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFG 113
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%)
Query: 71 ATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNIT 130
A G E+ ++L+ NGA +N GFTPL++AA H + LL G + + T
Sbjct: 56 AHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKT 115
Query: 131 PLHVACKWGKVAMVELL 147
++ G + E+L
Sbjct: 116 AFDISIGNGNEDLAEIL 132
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 82.8 bits (203), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 110/238 (46%), Gaps = 8/238 (3%)
Query: 525 GFTPLHLAA-KYGRMKIAQMLLQKDAPVDSQGKVASILTESGASI-TATTKKGFTPLHLA 582
GFTPL +A+ G ++ ++DAP V S GAS+ T + G T LHLA
Sbjct: 10 GFTPLMIASCSGGGLETGNSEEEEDAPA-----VISDFIYQGASLHNQTDRTGATALHLA 64
Query: 583 AKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNV-ALLLLDRGASPHAVAKNG 641
A Y R A+ LL+ A + Q G TPLH A D Q V +L+ +R A +G
Sbjct: 65 AAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDG 124
Query: 642 YTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVS 701
TPL +AA+ + L+ +A NA G + LH +A + D + +L+++GA
Sbjct: 125 TTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD 184
Query: 702 HQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYL 759
Q TPL L A+E A + + + A D P IA ++VR L
Sbjct: 185 MQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 115/257 (44%), Gaps = 30/257 (11%)
Query: 153 NIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRV 212
++ + DG TPL A+ SG GL + + D A
Sbjct: 2 DVNVRGPDGFTPLMIASCSG--------------------GGLETGNSEEEEDAPAVISD 41
Query: 213 LIYHGAGV-DEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKN 271
IY GA + ++ TALH+A+ AK LL+ AD N + G TPLH A +
Sbjct: 42 FIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSAD 101
Query: 272 RYKSSHCNHVWVAKTLL-DRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAAT 330
V + L+ +R D +AR +G TPL +A + ++E L+ A + A
Sbjct: 102 AQG--------VFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV 153
Query: 331 TESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNG 390
+ G + LH A+ + ++ A+ LL+ GA D R ETPL LAAR + ++LL +
Sbjct: 154 DDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHF 213
Query: 391 ASVDARAREDQTPLHVA 407
A+ D D+ P +A
Sbjct: 214 ANRDITDHMDRLPRDIA 230
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 77/257 (29%), Positives = 114/257 (44%), Gaps = 50/257 (19%)
Query: 293 DPNARALNGFTPLHIA-CKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAI 351
D N R +GFTPL IA C G + E P ++ F
Sbjct: 2 DVNVRGPDGFTPLMIASCSGG-----------GLETGNSEEEEDAPAVISDF-------- 42
Query: 352 FLLQAGAAPDTATVR-GETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRL 410
+ GA+ T R G T LHLAA +++D + LL AS DA +++
Sbjct: 43 --IYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLE--ASADANIQDNM--------- 89
Query: 411 RRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGAS-VDARAREDQTPLHVASRL 469
G TPLH A A+ + +IL+RN A+ +DAR + TPL +A+RL
Sbjct: 90 ---------------GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL 134
Query: 470 GNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPL 529
+ L+ A V+A G +ALH +A + A +L ++GA+ + TPL
Sbjct: 135 AVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPL 194
Query: 530 HLAAKYGRMKIAQMLLQ 546
LAA+ G + A++LL
Sbjct: 195 FLAAREGSYETAKVLLD 211
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 105/227 (46%), Gaps = 29/227 (12%)
Query: 601 VDSQGKNGVTPLHVAS-------------HYDHQNVALLLLDRGASPH-AVAKNGYTPLH 646
V+ +G +G TPL +AS D V + +GAS H + G T LH
Sbjct: 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATALH 62
Query: 647 IAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGAT-VSHQAK 705
+AA ++ D A LLE +A N + G TPLH + + +LI + AT + +
Sbjct: 63 LAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH 122
Query: 706 NGLTPLHLCAQ-------EDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRY 758
+G TPL L A+ ED +N + A+++ V G + LH A+ ++
Sbjct: 123 DGTTPLILAARLAVEGMLEDLIN-------SHADVNAVDDLGKSALHWAAAVNNVDAAVV 175
Query: 759 LVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNL 805
L++NGAN + N TPL A+++G +LL A + T ++
Sbjct: 176 LLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHM 222
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 85/190 (44%), Gaps = 20/190 (10%)
Query: 640 NGYTPLHIAA----------KKNQMD----IATTLLEYNAKPNAESKAGFTPLHLSAQEG 685
+G+TPL IA+ + + D I+ + + + N + G T LHL+A
Sbjct: 9 DGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATALHLAAAYS 68
Query: 686 HTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGA-EIDPVTKAGFTPL 744
+D + L+E A + Q G TPLH D V I + N A ++D G TPL
Sbjct: 69 RSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL 128
Query: 745 HIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTN 804
+A+ M+ L+ + A+VNA +LG + LH A+ V +LL GA + N
Sbjct: 129 ILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNN 188
Query: 805 -----LFCCA 809
LF A
Sbjct: 189 REETPLFLAA 198
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 111/250 (44%), Gaps = 27/250 (10%)
Query: 88 INVQSLNGFTPLYMAA-------------QENHDGVVRYLLSKGG---NQTLATEHNITP 131
+NV+ +GFTPL +A+ +E+ V+ + +G NQT T T
Sbjct: 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRT--GATA 60
Query: 132 LHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAA-LYSK 190
LH+A + + + L+ A+ + G TPLH A + V ILI A L ++
Sbjct: 61 LHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR 120
Query: 191 TKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRK 250
+G PL +A++ E LI A V+ + +ALH A+ +V A LL
Sbjct: 121 MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG 180
Query: 251 ADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACK 310
A+ + + TPL +A ++ Y++ AK LLD A+ + P IA +
Sbjct: 181 ANKDMQNNREETPLFLAAREGSYET--------AKVLLDHFANRDITDHMDRLPRDIAQE 232
Query: 311 KNRYKVVELL 320
+ + +V LL
Sbjct: 233 RMHHDIVRLL 242
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 89/184 (48%), Gaps = 5/184 (2%)
Query: 74 QEEVAKILVD---NGATINVQS-LNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNI 129
+E+ ++ D GA+++ Q+ G T L++AA + + LL + +
Sbjct: 32 EEDAPAVISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGR 91
Query: 130 TPLHVACKWGKVAMVELLI-SKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALY 188
TPLH A + ++LI ++ +++A+ DG TPL AAR + +++ LI A +
Sbjct: 92 TPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN 151
Query: 189 SKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLD 248
+ G + LH A+ ++ A VL+ +GA D T L +A+ G AK LLD
Sbjct: 152 AVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLD 211
Query: 249 RKAD 252
A+
Sbjct: 212 HFAN 215
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 3/153 (1%)
Query: 71 ATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHN-I 129
A + + AK L++ A N+Q G TPL+ A + GV + L+ A H+
Sbjct: 66 AYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT 125
Query: 130 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 189
TPL +A + M+E LI+ A++ A G + LH AA + + +L++ GA
Sbjct: 126 TPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM 185
Query: 190 KTKNGLAPLHMAS-QGDHEAATRVLIYHGAGVD 221
+ PL +A+ +G +E A +VL+ H A D
Sbjct: 186 QNNREETPLFLAAREGSYETA-KVLLDHFANRD 217
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%)
Query: 81 LVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGK 140
L+ NGA ++Q+ TPL++AA+E + LL N+ + + P +A +
Sbjct: 176 LLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH 235
Query: 141 VAMVELL 147
+V LL
Sbjct: 236 HDIVRLL 242
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 75/138 (54%), Gaps = 26/138 (18%)
Query: 374 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLA 433
A RA Q D VRIL+ NGA D A +D G TPLHLA
Sbjct: 21 ATRAGQDDEVRILMANGA--DVNAMDDA------------------------GVTPLHLA 54
Query: 434 ARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGY 493
A+ +IV +LL++GA V+A +TPLH+A+ +G+ +I +LL++GA V+A K G
Sbjct: 55 AKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGK 114
Query: 494 TALHISAKEGQDEVASIL 511
TA IS G +++A IL
Sbjct: 115 TAFDISIDNGNEDLAEIL 132
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 66/112 (58%)
Query: 433 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDG 492
A RA Q D VRIL+ NGA V+A TPLH+A++ G+ +I +LL+HGA V+A G
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWG 80
Query: 493 YTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
T LH++A G E+ +L E GA + A K G T ++ G +A++L
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 17/129 (13%)
Query: 499 SAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVA 558
+ + GQD+ IL +GA + A G TPLHLAAK G ++I ++LL+
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKH----------- 69
Query: 559 SILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHY 618
GA + A+ G TPLHLAA G ++I ++LL+ A V++Q K G T ++
Sbjct: 70 ------GADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDN 123
Query: 619 DHQNVALLL 627
++++A +L
Sbjct: 124 GNEDLAEIL 132
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 64/106 (60%), Gaps = 4/106 (3%)
Query: 714 CAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 773
Q+D+V I M NGA+++ + AG TPLH+A+ G L +V L+++GA+VNA+ + G
Sbjct: 24 AGQDDEVR---ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWG 80
Query: 774 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNLFCCA-TILVKNGAE 818
TPLH A+ G + I+++LL GA NA A I + NG E
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNE 126
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 61/112 (54%)
Query: 582 AAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNG 641
A + G+ ++L+ A V++ GVTPLH+A+ H + +LL GA +A G
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWG 80
Query: 642 YTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLL 693
TPLH+AA ++I LLEY A NA+ K G T +S G+ D++ +L
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 58/100 (58%)
Query: 626 LLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEG 685
+L+ GA +A+ G TPLH+AAK+ ++I LL++ A NA G TPLHL+A G
Sbjct: 32 ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVG 91
Query: 686 HTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATI 725
H ++ +L+E+GA V+ Q K G T + ++A I
Sbjct: 92 HLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEI 131
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 59/111 (53%)
Query: 554 QGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLH 613
Q IL +GA + A G TPLHLAAK G ++I ++LL+ A V++ G TPLH
Sbjct: 26 QDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLH 85
Query: 614 VASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYN 664
+A+ H + +LL+ GA +A K G T I+ D+A L + N
Sbjct: 86 LAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 17/129 (13%)
Query: 466 ASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKG 525
A+R G D +L+ +GA V+A G T LH++AK G E+ +L + GA + A+ G
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWG 80
Query: 526 FTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKY 585
TPLHLAA G ++I ++LL E GA + A K G T ++
Sbjct: 81 RTPLHLAATVGHLEIVEVLL-----------------EYGADVNAQDKFGKTAFDISIDN 123
Query: 586 GRMKIAQML 594
G +A++L
Sbjct: 124 GNEDLAEIL 132
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 67/120 (55%), Gaps = 2/120 (1%)
Query: 63 SLSNTKFEAT--GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGN 120
L EAT GQ++ +IL+ NGA +N G TPL++AA+ H +V LL G +
Sbjct: 13 DLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 121 QTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 180
+ TPLH+A G + +VE+L+ GA++ A+ + G T + +G++++ +IL
Sbjct: 73 VNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 57/102 (55%)
Query: 285 KTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFM 344
+ L+ AD NA G TPLH+A K+ ++VE+LLK+GA + A+ G TPLH+A+ +
Sbjct: 31 RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATV 90
Query: 345 GCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRIL 386
G + I LL+ GA + G+T ++ D+ IL
Sbjct: 91 GHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 62/115 (53%)
Query: 99 LYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKT 158
L A + D VR L++ G + + +TPLH+A K G + +VE+L+ GA++ A
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 159 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVL 213
G TPLH AA GH ++++L+E GA + ++ K G ++ +E +L
Sbjct: 78 SWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 54/100 (54%)
Query: 685 GHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPL 744
G D +L+ +GA V+ G+TPLHL A+ + + + + +GA+++ G TPL
Sbjct: 25 GQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPL 84
Query: 745 HIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQG 784
H+A+ G L +V L+E GA+VNA G T + G
Sbjct: 85 HLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNG 124
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 57/112 (50%)
Query: 648 AAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNG 707
A + Q D L+ A NA AG TPLHL+A+ GH ++ +L++HGA V+ G
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWG 80
Query: 708 LTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYL 759
TPLHL A + + + + GA+++ K G T I+ G ++ L
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 57/100 (57%)
Query: 308 ACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRG 367
A + + V +L+ GA + A ++G+TPLH+A+ G + I LL+ GA + + G
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWG 80
Query: 368 ETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVA 407
TPLHLAA +IV +LL GA V+A+ + +T ++
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 59/120 (49%), Gaps = 8/120 (6%)
Query: 234 ASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKAD 293
A+ G + L+ AD NA G TPLH+A K+ H+ + + LL AD
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRG--------HLEIVEVLLKHGAD 72
Query: 294 PNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFL 353
NA G TPLH+A ++VE+LL+YGA + A + G T ++ G ++A L
Sbjct: 73 VNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 55/101 (54%)
Query: 168 AARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDY 227
A R+G D+ + IL+ GA + + G+ PLH+A++ H VL+ HGA V+
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWG 80
Query: 228 LTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIAC 268
T LH+A+ GH+ + + LL+ AD NA+ G T I+
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISI 121
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 60/127 (47%), Gaps = 26/127 (20%)
Query: 352 FLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLR 411
L+ GA + G TPLHLAA+ +IV +LL++GA V+A
Sbjct: 32 ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNA---------------- 75
Query: 412 RFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGN 471
+ G TPLHLAA +IV +LL GA V+A+ + +T ++ GN
Sbjct: 76 ----------SDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGN 125
Query: 472 GDIASLL 478
D+A +L
Sbjct: 126 EDLAEIL 132
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 62/112 (55%)
Query: 135 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNG 194
A + G+ V +L++ GA++ A G+TPLH AA+ GH ++++L++ GA + + G
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWG 80
Query: 195 LAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTL 246
PLH+A+ H VL+ +GA V+ TA ++ G+ +A+ L
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 8/122 (6%)
Query: 201 ASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNG 260
A++ + R+L+ +GA V+ + +T LH+A+ GH+ + + LL AD NA G
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWG 80
Query: 261 FTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELL 320
TPLH+A H+ + + LL+ AD NA+ G T I+ + E+L
Sbjct: 81 RTPLHLAAT--------VGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Query: 321 LK 322
K
Sbjct: 133 QK 134
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 13/92 (14%)
Query: 747 ASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNAT---- 802
A+ GQ + VR L+ NGA+VNA + G TPLH A+++G + I+++LL GA NA+
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWG 80
Query: 803 -TNLFCCAT--------ILVKNGAEIDPVTKL 825
T L AT +L++ GA+++ K
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGADVNAQDKF 112
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 114/250 (45%), Gaps = 14/250 (5%)
Query: 305 LHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTAT 364
+H+A +K + V L++ G S G T LH+A GC++ A +L G +
Sbjct: 24 IHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEV--HSL 81
Query: 365 VRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRV 424
G+ P+HLA AN+TD+V + L GA R + ++ L+ R + S +
Sbjct: 82 WHGQKPIHLAVXANKTDLV-VALVEGAK--ERGQXPESLLNECD--EREVNEIGSHVKHC 136
Query: 425 RGETPLHLAA--RANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHG 482
+G+T LH + ++IL++ GAS A+ + D+TPL A N + L
Sbjct: 137 KGQTALHWCVGLGPEYLEXIKILVQLGASPTAKDKADETPLXRAXEFRNREALDLXXDTV 196
Query: 483 AS-----VDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGR 537
S +D K G + LH + ++VA E G + + PL+L+ +
Sbjct: 197 PSKSSLRLDYANKQGNSHLHWAILINWEDVAXRFVEXGIDVNXEDNEHTVPLYLSVRAAX 256
Query: 538 MKIAQMLLQK 547
+ + + LLQK
Sbjct: 257 VLLTKELLQK 266
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 105/252 (41%), Gaps = 19/252 (7%)
Query: 458 EDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGAS 517
E+ +HVA+R G D L++ G S + G TALH++ K G + A L G
Sbjct: 19 ENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGE- 77
Query: 518 ITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKV-ASILTESGA----SITATT 572
+ G P+HLA + + L++ +G+ S+L E I +
Sbjct: 78 -VHSLWHGQKPIHLAVXANKTDLVVALVEG---AKERGQXPESLLNECDEREVNEIGSHV 133
Query: 573 K--KGFTPLHLAAKYG--RMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLL 628
K KG T LH G ++ ++L+Q A ++ K TPL A + ++ L
Sbjct: 134 KHCKGQTALHWCVGLGPEYLEXIKILVQLGASPTAKDKADETPLXRAXEFRNREALDLXX 193
Query: 629 DRGASPHAVA-----KNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQ 683
D S ++ K G + LH A N D+A +E N E PL+LS +
Sbjct: 194 DTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAXRFVEXGIDVNXEDNEHTVPLYLSVR 253
Query: 684 EGHTDMSSLLIE 695
++ L++
Sbjct: 254 AAXVLLTKELLQ 265
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/328 (22%), Positives = 120/328 (36%), Gaps = 68/328 (20%)
Query: 496 LHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQG 555
+H++A++GQ + L E+G S T + G T LHLA K+G + A+ L S G
Sbjct: 24 IHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLA-------SVG 76
Query: 556 KVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVA 615
+V S+ G P+HLA + + L V+ + G P +
Sbjct: 77 EVHSLW------------HGQKPIHLAVXANKTDLVVAL------VEGAKERGQXPESLL 118
Query: 616 SHYDHQNVALLLLDRGASPHAVAKNGYTPLH--IAAKKNQMDIATTLLEYNAKPNAESKA 673
+ D + V + H G T LH + ++ L++ A P A+ KA
Sbjct: 119 NECDEREVNEI------GSHVKHCKGQTALHWCVGLGPEYLEXIKILVQLGASPTAKDKA 172
Query: 674 GFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEI 733
TPL + + + + L + T+ + +
Sbjct: 173 DETPLXRAXEFRNREALDLXXD----------------------------TVPSKSSLRL 204
Query: 734 DPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLL 793
D K G + LH A ++ VE G +VN N PL+ + + VL+ LL
Sbjct: 205 DYANKQGNSHLHWAILINWEDVAXRFVEXGIDVNXEDNEHTVPLYLSVRAAXVLLTKELL 264
Query: 794 GAGAQPNATTNLFCCATILVKNGAEIDP 821
T++F NG + P
Sbjct: 265 -------QKTDVFLIQACPYHNGTTVLP 285
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 102/258 (39%), Gaps = 41/258 (15%)
Query: 430 LHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLL--------LQH 481
+H+AAR QTD VR L+ G S + R T LH+A + G D A L L H
Sbjct: 24 IHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWH 83
Query: 482 GA-----SVDAPTKDGYTALHISAKEGQDEVASILTESGA----SITATTK--KGFTPLH 530
G +V A D AL AKE S+L E I + K KG T LH
Sbjct: 84 GQKPIHLAVXANKTDLVVALVEGAKERGQXPESLLNECDEREVNEIGSHVKHCKGQTALH 143
Query: 531 LAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKI 590
G + + IL + GAS TA K TPL A ++ R +
Sbjct: 144 WCVGLGPEYLEXI---------------KILVQLGASPTAKDKADETPLXRAXEF-RNRE 187
Query: 591 AQMLLQKDAP------VDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTP 644
A L P +D K G + LH A + ++VA ++ G + P
Sbjct: 188 ALDLXXDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAXRFVEXGIDVNXEDNEHTVP 247
Query: 645 LHIAAKKNQMDIATTLLE 662
L+++ + + + LL+
Sbjct: 248 LYLSVRAAXVLLTKELLQ 265
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 76/179 (42%), Gaps = 21/179 (11%)
Query: 99 LYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKT 158
+++AA++ VR L+ G + T+ T LH+ACK+G V + L S G
Sbjct: 24 IHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEV--HSL 81
Query: 159 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRV--LIYH 216
G P+H A + +++ L+E GA + G P + ++ D + + H
Sbjct: 82 WHGQKPIHLAVXANKTDLVVALVE-GA-----KERGQXPESLLNECDEREVNEIGSHVKH 135
Query: 217 GAGVDEITVDYLTALHVASHCG--HVRVAKTLLDRKADPNARALNGFTPLHIACK-KNR 272
G TALH G ++ K L+ A P A+ TPL A + +NR
Sbjct: 136 CKG--------QTALHWCVGLGPEYLEXIKILVQLGASPTAKDKADETPLXRAXEFRNR 186
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 120 NQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDI 179
N+ + + N +HVA + G+ V LI G + + R G T LH A + G +
Sbjct: 12 NRIKSDDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKY 71
Query: 180 LIEKGA--ALYSKTKNGLAPLHMA 201
L G +L+ +G P+H+A
Sbjct: 72 LASVGEVHSLW----HGQKPIHLA 91
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 61/97 (62%)
Query: 426 GETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASV 485
G TPLH AA+ + V+ LL GA V+AR+++ TPLH+A++ G+ +I LLL GA V
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV 68
Query: 486 DAPTKDGYTALHISAKEGQDEVASILTESGASITATT 522
+A +KDG T H++ K G E+ +L GA + A +
Sbjct: 69 NARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105
Score = 79.7 bits (195), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 66/100 (66%)
Query: 92 SLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKG 151
S +G TPL+ AA+ H V+ LLSKG + ++ TPLH+A K G +V+LL++KG
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 152 ANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKT 191
A++ A+++DG TP H A ++GH ++ +L KGA + +++
Sbjct: 66 ADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 61/92 (66%)
Query: 130 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 189
TPLH A K G V+ L+SKGA++ A+++DG TPLH AA++GH ++ +L+ KGA + +
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA 70
Query: 190 KTKNGLAPLHMASQGDHEAATRVLIYHGAGVD 221
++K+G P H+A + H ++L GA V+
Sbjct: 71 RSKDGNTPEHLAKKNGHHEIVKLLDAKGADVN 102
Score = 76.3 bits (186), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 61/99 (61%)
Query: 456 AREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESG 515
+++ TPLH A++ G+ + LL GA V+A +KDG T LH++AK G E+ +L G
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 516 ASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQ 554
A + A +K G TP HLA K G +I ++L K A V+++
Sbjct: 66 ADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR 104
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 61/116 (52%), Gaps = 17/116 (14%)
Query: 489 TKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKD 548
+KDG T LH +AK G E L GA + A +K G TPLHLAAK G +I ++LL K
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK- 64
Query: 549 APVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQ 604
GA + A +K G TP HLA K G +I ++L K A V+++
Sbjct: 65 ----------------GADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR 104
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 59/100 (59%)
Query: 671 SKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNG 730
SK G TPLH +A+ GH + L+ GA V+ ++K+G TPLHL A+ + + + G
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 731 AEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATT 770
A+++ +K G TP H+A G +V+ L GA+VNA +
Sbjct: 66 ADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 61/101 (60%)
Query: 158 TRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHG 217
++DG TPLH AA++GH + L+ KGA + +++K+G PLH+A++ H ++L+ G
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 218 AGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARAL 258
A V+ + D T H+A GH + K L + AD NAR+
Sbjct: 66 ADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSW 106
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 61/115 (53%), Gaps = 17/115 (14%)
Query: 522 TKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHL 581
+K G TPLH AAK G + + LL K GA + A +K G TPLHL
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSK-----------------GADVNARSKDGNTPLHL 48
Query: 582 AAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHA 636
AAK G +I ++LL K A V+++ K+G TP H+A H + LL +GA +A
Sbjct: 49 AAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA 103
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 55/96 (57%)
Query: 606 KNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNA 665
K+G TPLH A+ H LL +GA +A +K+G TPLH+AAK +I LL A
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 666 KPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVS 701
NA SK G TP HL+ + GH ++ LL GA V+
Sbjct: 67 DVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVN 102
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 58/100 (58%)
Query: 572 TKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRG 631
+K G TPLH AAK G + + LL K A V+++ K+G TPLH+A+ H + LLL +G
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 632 ASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAES 671
A +A +K+G TP H+A K +I L A NA S
Sbjct: 66 ADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 56/97 (57%)
Query: 638 AKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHG 697
+K+G TPLH AAK + LL A NA SK G TPLHL+A+ GH ++ LL+ G
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 698 ATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEID 734
A V+ ++K+G TP HL + + + GA+++
Sbjct: 66 ADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVN 102
Score = 69.3 bits (168), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 55/98 (56%)
Query: 300 NGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAA 359
+G TPLH A K + V+ LL GA + A ++ G TPLH+A+ G I LL GA
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 360 PDTATVRGETPLHLAARANQTDIVRILLRNGASVDARA 397
+ + G TP HLA + +IV++L GA V+AR+
Sbjct: 68 VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 55/100 (55%)
Query: 704 AKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENG 763
+K+G TPLH A+ + GA+++ +K G TPLH+A+ G +V+ L+ G
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 764 ANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATT 803
A+VNA + G TP H A + G I+ LL GA NA +
Sbjct: 66 ADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 54/100 (54%), Gaps = 8/100 (8%)
Query: 259 NGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVE 318
+G TPLH N K+ H V K LL + AD NAR+ +G TPLH+A K ++V+
Sbjct: 8 DGNTPLH-----NAAKNGHAEEV---KKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVK 59
Query: 319 LLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGA 358
LLL GA + A ++ G TP H+A G I L GA
Sbjct: 60 LLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGA 99
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 61/126 (48%), Gaps = 26/126 (20%)
Query: 331 TESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNG 390
++ G TPLH A+ G LL GA + + G TPLHLAA+ +IV++LL G
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 391 ASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGA 450
A V+AR+++ G TP HLA + +IV++L GA
Sbjct: 66 ADVNARSKD--------------------------GNTPEHLAKKNGHHEIVKLLDAKGA 99
Query: 451 SVDARA 456
V+AR+
Sbjct: 100 DVNARS 105
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 59/109 (54%), Gaps = 8/109 (7%)
Query: 191 TKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRK 250
+K+G PLH A++ H + L+ GA V+ + D T LH+A+ GH + K LL +
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 251 ADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARAL 299
AD NAR+ +G TP H+A K ++ + K L + AD NAR+
Sbjct: 66 ADVNARSKDGNTPEHLAKKNGHHE--------IVKLLDAKGADVNARSW 106
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 54/87 (62%)
Query: 72 TGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITP 131
G E K L+ GA +N +S +G TPL++AA+ H +V+ LL+KG + ++ TP
Sbjct: 19 NGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTP 78
Query: 132 LHVACKWGKVAMVELLISKGANIEAKT 158
H+A K G +V+LL +KGA++ A++
Sbjct: 79 EHLAKKNGHHEIVKLLDAKGADVNARS 105
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 75/138 (54%), Gaps = 26/138 (18%)
Query: 374 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLA 433
A RA Q D VRIL+ NGA D A +D G TPLHLA
Sbjct: 21 ATRAGQDDEVRILMANGA--DVNAMDDA------------------------GVTPLHLA 54
Query: 434 ARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGY 493
A+ +IV +LL++GA V+A +TPLH+A+ +G+ +I +LL++GA V+A K G
Sbjct: 55 AKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGK 114
Query: 494 TALHISAKEGQDEVASIL 511
TA IS G +++A IL
Sbjct: 115 TAFDISIDNGNEDLAEIL 132
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 66/112 (58%)
Query: 433 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDG 492
A RA Q D VRIL+ NGA V+A TPLH+A++ G+ +I +LL+HGA V+A G
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWG 80
Query: 493 YTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
T LH++A G E+ +L E GA + A K G T ++ G +A++L
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 17/129 (13%)
Query: 499 SAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVA 558
+ + GQD+ IL +GA + A G TPLHLAAK G ++I ++LL+
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKH----------- 69
Query: 559 SILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHY 618
GA + A+ G TPLHLAA G ++I ++LL+ A V++Q K G T ++
Sbjct: 70 ------GADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDN 123
Query: 619 DHQNVALLL 627
++++A +L
Sbjct: 124 GNEDLAEIL 132
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 63/106 (59%), Gaps = 4/106 (3%)
Query: 714 CAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 773
Q+D+V I M NGA+++ + AG TPLH+A+ G L +V L+++GA+VNA+ G
Sbjct: 24 AGQDDEVR---ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWG 80
Query: 774 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNLFCCA-TILVKNGAE 818
TPLH A+ G + I+++LL GA NA A I + NG E
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNE 126
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 61/112 (54%)
Query: 582 AAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNG 641
A + G+ ++L+ A V++ GVTPLH+A+ H + +LL GA +A G
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWG 80
Query: 642 YTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLL 693
TPLH+AA ++I LLEY A NA+ K G T +S G+ D++ +L
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 58/100 (58%)
Query: 626 LLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEG 685
+L+ GA +A+ G TPLH+AAK+ ++I LL++ A NA G TPLHL+A G
Sbjct: 32 ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVG 91
Query: 686 HTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATI 725
H ++ +L+E+GA V+ Q K G T + ++A I
Sbjct: 92 HLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEI 131
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 59/112 (52%)
Query: 553 SQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPL 612
Q IL +GA + A G TPLHLAAK G ++I ++LL+ A V++ G TPL
Sbjct: 25 GQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPL 84
Query: 613 HVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYN 664
H+A+ H + +LL+ GA +A K G T I+ D+A L + N
Sbjct: 85 HLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 17/129 (13%)
Query: 466 ASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKG 525
A+R G D +L+ +GA V+A G T LH++AK G E+ +L + GA + A+ G
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWG 80
Query: 526 FTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKY 585
TPLHLAA G ++I ++LL E GA + A K G T ++
Sbjct: 81 RTPLHLAATVGHLEIVEVLL-----------------EYGADVNAQDKFGKTAFDISIDN 123
Query: 586 GRMKIAQML 594
G +A++L
Sbjct: 124 GNEDLAEIL 132
Score = 69.3 bits (168), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 67/120 (55%), Gaps = 2/120 (1%)
Query: 63 SLSNTKFEAT--GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGN 120
L EAT GQ++ +IL+ NGA +N G TPL++AA+ H +V LL G +
Sbjct: 13 DLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 121 QTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 180
+ TPLH+A G + +VE+L+ GA++ A+ + G T + +G++++ +IL
Sbjct: 73 VNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 57/102 (55%)
Query: 285 KTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFM 344
+ L+ AD NA G TPLH+A K+ ++VE+LLK+GA + A+ G TPLH+A+ +
Sbjct: 31 RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATV 90
Query: 345 GCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRIL 386
G + I LL+ GA + G+T ++ D+ IL
Sbjct: 91 GHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 62/115 (53%)
Query: 99 LYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKT 158
L A + D VR L++ G + + +TPLH+A K G + +VE+L+ GA++ A
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 159 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVL 213
G TPLH AA GH ++++L+E GA + ++ K G ++ +E +L
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 58/100 (58%)
Query: 308 ACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRG 367
A + + V +L+ GA + A ++G+TPLH+A+ G + I LL+ GA + + + G
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWG 80
Query: 368 ETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVA 407
TPLHLAA +IV +LL GA V+A+ + +T ++
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 54/100 (54%)
Query: 685 GHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPL 744
G D +L+ +GA V+ G+TPLHL A+ + + + + +GA+++ G TPL
Sbjct: 25 GQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPL 84
Query: 745 HIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQG 784
H+A+ G L +V L+E GA+VNA G T + G
Sbjct: 85 HLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNG 124
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 60/120 (50%), Gaps = 8/120 (6%)
Query: 234 ASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKAD 293
A+ G + L+ AD NA G TPLH+A K+ H+ + + LL AD
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRG--------HLEIVEVLLKHGAD 72
Query: 294 PNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFL 353
NA + G TPLH+A ++VE+LL+YGA + A + G T ++ G ++A L
Sbjct: 73 VNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 57/112 (50%)
Query: 648 AAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNG 707
A + Q D L+ A NA AG TPLHL+A+ GH ++ +L++HGA V+ G
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWG 80
Query: 708 LTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYL 759
TPLHL A + + + + GA+++ K G T I+ G ++ L
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 56/101 (55%)
Query: 168 AARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDY 227
A R+G D+ + IL+ GA + + G+ PLH+A++ H VL+ HGA V+ +
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWG 80
Query: 228 LTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIAC 268
T LH+A+ GH+ + + LL+ AD NA+ G T I+
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISI 121
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 61/127 (48%), Gaps = 26/127 (20%)
Query: 352 FLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLR 411
L+ GA + G TPLHLAA+ +IV +LL++GA V+A
Sbjct: 32 ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNA---------------- 75
Query: 412 RFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGN 471
+ + G TPLHLAA +IV +LL GA V+A+ + +T ++ GN
Sbjct: 76 ----------SDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGN 125
Query: 472 GDIASLL 478
D+A +L
Sbjct: 126 EDLAEIL 132
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 62/112 (55%)
Query: 135 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNG 194
A + G+ V +L++ GA++ A G+TPLH AA+ GH ++++L++ GA + + G
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWG 80
Query: 195 LAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTL 246
PLH+A+ H VL+ +GA V+ TA ++ G+ +A+ L
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 8/122 (6%)
Query: 201 ASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNG 260
A++ + R+L+ +GA V+ + +T LH+A+ GH+ + + LL AD NA + G
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWG 80
Query: 261 FTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELL 320
TPLH+A H+ + + LL+ AD NA+ G T I+ + E+L
Sbjct: 81 RTPLHLAAT--------VGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Query: 321 LK 322
K
Sbjct: 133 QK 134
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 13/93 (13%)
Query: 747 ASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNAT---- 802
A+ GQ + VR L+ NGA+VNA + G TPLH A+++G + I+++LL GA NA+
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWG 80
Query: 803 -TNLFCCAT--------ILVKNGAEIDPVTKLS 826
T L AT +L++ GA+++ K
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGADVNAQDKFG 113
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 81/153 (52%)
Query: 601 VDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTL 660
V+ ++G +PLHVA+ + ++ LLL GA+ A + PLH+A ++ + L
Sbjct: 79 VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCL 138
Query: 661 LEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKV 720
L+ NAKPN + +G TPL + GH ++ +LL++HGA+++ G T LH E V
Sbjct: 139 LDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHV 198
Query: 721 NVATITMFNGAEIDPVTKAGFTPLHIASHFGQL 753
V + + +GA + + K T + A ++
Sbjct: 199 FVVELLLLHGASVQVLNKRQRTAVDCAEQNSKI 231
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 86/174 (49%), Gaps = 3/174 (1%)
Query: 547 KDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGK 606
K AP +Q ++A + SG + T++ G +PLH+AA +GR + +LL+ A ++
Sbjct: 61 KCAP--AQKRLAKV-PASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNA 117
Query: 607 NGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAK 666
+ PLH+A H V LLD A P+ +G TPL A ++ LL++ A
Sbjct: 118 DQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGAS 177
Query: 667 PNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKV 720
NA + G T LH + E H + LL+ HGA+V K T + Q K+
Sbjct: 178 INASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKI 231
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 72/130 (55%)
Query: 668 NAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITM 727
N S+ G +PLH++A G D+ LL++HGA + + PLHL Q+ V +
Sbjct: 80 NVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLL 139
Query: 728 FNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVL 787
+ A+ + +G TPL A G +V L+++GA++NA+ N G T LH+A + V
Sbjct: 140 DSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVF 199
Query: 788 IIDLLLGAGA 797
+++LLL GA
Sbjct: 200 VVELLLLHGA 209
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 1/166 (0%)
Query: 71 ATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNIT 130
A Q+ +AK+ +G +NV S +G +PL++AA ++ LL G N
Sbjct: 63 APAQKRLAKVPA-SGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAV 121
Query: 131 PLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSK 190
PLH+AC+ G +V+ L+ A K G TPL A GH ++ +L++ GA++ +
Sbjct: 122 PLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINAS 181
Query: 191 TKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASH 236
G LH A H +L+ HGA V + TA+ A
Sbjct: 182 NNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQ 227
Score = 72.4 bits (176), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 92/190 (48%), Gaps = 27/190 (14%)
Query: 356 AGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSS 415
+G + + G +PLH+AA + D++ +LL++GA+ AR +
Sbjct: 75 SGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGAR------------------N 116
Query: 416 ASQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIA 475
A Q+ PLHLA + +V+ LL + A + + TPL A G+ ++
Sbjct: 117 ADQA--------VPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELV 168
Query: 476 SLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKY 535
+LLLQHGAS++A G TALH + E V +L GAS+ K+ T + A +
Sbjct: 169 ALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQN 228
Query: 536 GR-MKIAQML 544
+ M++ Q++
Sbjct: 229 SKIMELLQVV 238
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 96/227 (42%), Gaps = 50/227 (22%)
Query: 110 VVRYLLSKGGNQTLATEHNITP-----LHVACKWGKVAMVELLISK----GANIEAKTRD 160
+VRYLL E ++ H C+ K A + ++K G + ++D
Sbjct: 26 MVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQD 85
Query: 161 GLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGV 220
G +PLH AA G ++I +L++ GA ++ + PLH+A Q
Sbjct: 86 GSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQ---------------- 129
Query: 221 DEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNH 280
GH +V K LLD A PN + L+G TPL AC S +H
Sbjct: 130 -----------------GHFQVVKCLLDSNAKPNKKDLSGNTPLIYAC-------SGGHH 165
Query: 281 VWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASI 327
VA LL A NA G T LH A + VVELLL +GAS+
Sbjct: 166 ELVA-LLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASV 211
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 82/184 (44%), Gaps = 28/184 (15%)
Query: 295 NARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLL 354
N + +G +PLH+A R ++ LLLK+GA+ A PLH+A G + LL
Sbjct: 80 NVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLL 139
Query: 355 QAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFS 414
+ A P+ + G TPL A ++V +LL++GAS++A
Sbjct: 140 DSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINA------------------- 180
Query: 415 SASQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDI 474
+ +G T LH A +V +LL +GASV + +T + A + N I
Sbjct: 181 -------SNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQ--NSKI 231
Query: 475 ASLL 478
LL
Sbjct: 232 MELL 235
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 69/131 (52%)
Query: 421 LTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQ 480
+T G +PLH+AA + D++ +LL++GA+ AR + PLH+A + G+ + LL
Sbjct: 81 VTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLD 140
Query: 481 HGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKI 540
A + G T L + G E+ ++L + GASI A+ KG T LH A + +
Sbjct: 141 SNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFV 200
Query: 541 AQMLLQKDAPV 551
++LL A V
Sbjct: 201 VELLLLHGASV 211
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 76/170 (44%), Gaps = 17/170 (10%)
Query: 448 NGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEV 507
+G V+ +++ +PLHVA+ G D+ LLL+HGA+ A D LH++ ++G +V
Sbjct: 75 SGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQV 134
Query: 508 ASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGAS 567
L +S A G TPL A G ++ +LLQ GAS
Sbjct: 135 VKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQ-----------------HGAS 177
Query: 568 ITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASH 617
I A+ KG T LH A + + ++LL A V K T + A
Sbjct: 178 INASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQ 227
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 254 NARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNR 313
N + +G +PLH+A R + LL A+ AR + PLH+AC++
Sbjct: 80 NVTSQDGSSPLHVAALHGRAD--------LIPLLLKHGANAGARNADQAVPLHLACQQGH 131
Query: 314 YKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHL 373
++VV+ LL A SG TPL A G + LLQ GA+ + + +G T LH
Sbjct: 132 FQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHE 191
Query: 374 AARANQTDIVRILLRNGASVDARAREDQTPLHVASR 409
A +V +LL +GASV + +T + A +
Sbjct: 192 AVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQ 227
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 76/170 (44%), Gaps = 17/170 (10%)
Query: 514 SGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTK 573
SG + T++ G +PLH+AA +GR + +LL+ GA+ A
Sbjct: 75 SGLGVNVTSQDGSSPLHVAALHGRADLIPLLLK-----------------HGANAGARNA 117
Query: 574 KGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGAS 633
PLHLA + G ++ + LL +A + + +G TPL A H + LLL GAS
Sbjct: 118 DQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGAS 177
Query: 634 PHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQ 683
+A G T LH A + + + LL + A +K T + + Q
Sbjct: 178 INASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQ 227
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 77/173 (44%), Gaps = 26/173 (15%)
Query: 324 GASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIV 383
G + T++ G +PLHVA+ G ++ LL+ GA PLHLA + +V
Sbjct: 76 GLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVV 135
Query: 384 RILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVR 443
+ LL D+ A+ ++ L G TPL A ++V
Sbjct: 136 KCLL------DSNAKPNKKDL--------------------SGNTPLIYACSGGHHELVA 169
Query: 444 ILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTAL 496
+LL++GAS++A + T LH A + + LLL HGASV K TA+
Sbjct: 170 LLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAV 222
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 77/173 (44%), Gaps = 17/173 (9%)
Query: 482 GASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIA 541
G V+ ++DG + LH++A G+ ++ +L + GA+ A PLHLA + G ++
Sbjct: 76 GLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVV 135
Query: 542 QMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPV 601
+ LL +S A G TPL A G ++ +LLQ A +
Sbjct: 136 KCLL-----------------DSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASI 178
Query: 602 DSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQM 654
++ G T LH A H V LLL GAS + K T + A + +++
Sbjct: 179 NASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKI 231
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 57/105 (54%), Gaps = 13/105 (12%)
Query: 729 NGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLI 788
+G ++ ++ G +PLH+A+ G+ +++ L+++GAN A PLH A QQG +
Sbjct: 75 SGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQV 134
Query: 789 IDLLLGAGAQPNA------TTNLFCCA-------TILVKNGAEID 820
+ LL + A+PN T ++ C+ +L+++GA I+
Sbjct: 135 VKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASIN 179
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 53/108 (49%)
Query: 697 GATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMV 756
G V+ +++G +PLH+ A + ++ + + +GA PLH+A G +V
Sbjct: 76 GLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVV 135
Query: 757 RYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTN 804
+ L+++ A N G TPL A G ++ LLL GA NA+ N
Sbjct: 136 KCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNN 183
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 49/99 (49%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
G +V K L+D+ A N + L+G TPL A H +V LL G + + T L
Sbjct: 130 GHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTAL 189
Query: 133 HVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARS 171
H A V +VELL+ GA+++ + T + CA ++
Sbjct: 190 HEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQN 228
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
G E+ +L+ +GA+IN + G T L+ A E H VV LL G + + + T
Sbjct: 163 GHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTA- 221
Query: 133 HVACKWGKVAMVELL 147
V C ++ELL
Sbjct: 222 -VDCAEQNSKIMELL 235
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 112/248 (45%), Gaps = 43/248 (17%)
Query: 93 LNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGA 152
++ ++P++ AA H +R L+S+G + T +++PLH AC G ++ V++L+ GA
Sbjct: 1 MSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGA 60
Query: 153 NIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRV 212
+ T D TPL A SG + +++L++ GA++ ++ +P+H A++ H
Sbjct: 61 QVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA-SPIHEAARRGHVECVNS 119
Query: 213 LIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNR 272
LI +G +D H SH G TPL++AC+ +
Sbjct: 120 LIAYGGNID----------HKISHLG-----------------------TPLYLACENQQ 146
Query: 273 YKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTE 332
K LL+ AD N + +PLH + ++ LL+ +GA A
Sbjct: 147 RA--------CVKKLLESGADVN-QGKGQDSPLHAVARTASEELACLLMDFGADTQAKNA 197
Query: 333 SGLTPLHV 340
G P+ +
Sbjct: 198 EGKRPVEL 205
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 111/241 (46%), Gaps = 21/241 (8%)
Query: 428 TPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDA 487
+P+H AA +R L+ G +V+ + +PLH A G+ +LL+HGA V+
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 64
Query: 488 PTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQK 547
T D +T L + G + ++L + GAS+ + +P+H AA+ G ++ L+
Sbjct: 65 VTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA-SPIHEAARRGHVECVNSLIAY 123
Query: 548 DAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKN 607
+D + ++ G TPL+LA + + + LL+ A V+ QGK
Sbjct: 124 GGNIDHK------ISHLG-----------TPLYLACENQQRACVKKLLESGADVN-QGKG 165
Query: 608 GVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKP 667
+PLH + + +A LL+D GA A G P+ + ++ + A LE P
Sbjct: 166 QDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPL--AQLFLEREGPP 223
Query: 668 N 668
+
Sbjct: 224 S 224
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 100/213 (46%), Gaps = 13/213 (6%)
Query: 299 LNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGA 358
++ ++P+H A + L+ G ++ T ++PLH A G ++ LL+ GA
Sbjct: 1 MSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGA 60
Query: 359 APDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQ 418
+ T TPL A + D V +LL++GASV + + +P+H A+ RR
Sbjct: 61 QVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAA--RRGHVECV 117
Query: 419 SALTRVRGE---------TPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRL 469
++L G TPL+LA Q V+ LL +GA V+ +D +PLH +R
Sbjct: 118 NSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQD-SPLHAVART 176
Query: 470 GNGDIASLLLQHGASVDAPTKDGYTALHISAKE 502
+ ++A LL+ GA A +G + + E
Sbjct: 177 ASEELACLLMDFGADTQAKNAEGKRPVELVPPE 209
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 95/202 (47%), Gaps = 2/202 (0%)
Query: 576 FTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPH 635
++P+H AA +G + L+ + V+ + V+PLH A H + +LL GA +
Sbjct: 4 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 63
Query: 636 AVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIE 695
V + +TPL A D LL++ A ES +P+H +A+ GH + + LI
Sbjct: 64 GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA-SPIHEAARRGHVECVNSLIA 122
Query: 696 HGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNM 755
+G + H+ + TPL+L + + + +GA+++ K +PLH + +
Sbjct: 123 YGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVARTASEEL 181
Query: 756 VRYLVENGANVNATTNLGYTPL 777
L++ GA+ A G P+
Sbjct: 182 ACLLMDFGADTQAKNAEGKRPV 203
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 107/241 (44%), Gaps = 12/241 (4%)
Query: 81 LVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGK 140
L+ G +N+ + + +PL+ A H V+ LL G T TPL AC G
Sbjct: 22 LISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGS 81
Query: 141 VAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHM 200
V LL+ GA+++ ++ D +P+H AAR GH ++ LI G + K + PL++
Sbjct: 82 WDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYL 140
Query: 201 ASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNG 260
A + A + L+ GA V++ + LH + +A L+D AD A+ G
Sbjct: 141 ACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEG 199
Query: 261 FTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELL 320
P+ + ++ +A+ L+R+ P+ L + +K+ +L+
Sbjct: 200 KRPVELVPPESP----------LAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLV 249
Query: 321 L 321
L
Sbjct: 250 L 250
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 93/193 (48%), Gaps = 4/193 (2%)
Query: 610 TPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNA 669
+P+H A+ + HQ L+ +G + + + + +PLH A + LL++ A+ N
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 64
Query: 670 ESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGL-TPLHLCAQEDKVNVATITMF 728
+ TPL + G D +LL++HGA+V Q ++ L +P+H A+ V +
Sbjct: 65 VTADWHTPLFNACVSGSWDCVNLLLQHGASV--QPESDLASPIHEAARRGHVECVNSLIA 122
Query: 729 NGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLI 788
G ID TPL++A Q V+ L+E+GA+VN +PLH ++ +
Sbjct: 123 YGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQD-SPLHAVARTASEEL 181
Query: 789 IDLLLGAGAQPNA 801
LL+ GA A
Sbjct: 182 ACLLMDFGADTQA 194
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 104/270 (38%), Gaps = 69/270 (25%)
Query: 196 APLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNA 255
+P+H A+ H+ + R LI G V+ IT D+++ LH A
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEA--------------------- 43
Query: 256 RALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYK 315
L G H++C K LL A N + TPL AC +
Sbjct: 44 -CLGG----HLSC---------------VKILLKHGAQVNGVTADWHTPLFNACVSGSWD 83
Query: 316 VVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAA 375
V LLL++GAS+ ++ +P+H A+ G + L+ G D TPL+LA
Sbjct: 84 CVNLLLQHGASVQPESDLA-SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLAC 142
Query: 376 RANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAAR 435
Q V+ LL +GA V+ +D +PLH AR
Sbjct: 143 ENQQRACVKKLLESGADVNQGKGQD---------------------------SPLHAVAR 175
Query: 436 ANQTDIVRILLRNGASVDARAREDQTPLHV 465
++ +L+ GA A+ E + P+ +
Sbjct: 176 TASEELACLLMDFGADTQAKNAEGKRPVEL 205
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 100/235 (42%), Gaps = 22/235 (9%)
Query: 526 FTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKY 585
++P+H AA +G Q+ L+ L G ++ T +PLH A
Sbjct: 4 WSPMHEAAIHGH----QLSLRN-------------LISQGWAVNIITADHVSPLHEACLG 46
Query: 586 GRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPL 645
G + ++LL+ A V+ + TPL A + LLL GAS + +P+
Sbjct: 47 GHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP-ESDLASPI 105
Query: 646 HIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAK 705
H AA++ ++ +L+ Y + + TPL+L+ + L+E GA V+ Q K
Sbjct: 106 HEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGK 164
Query: 706 NGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIA---SHFGQLNMVR 757
+PLH A+ +A + M GA+ G P+ + S QL + R
Sbjct: 165 GQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQLFLER 219
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 66/123 (53%), Gaps = 1/123 (0%)
Query: 675 FTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEID 734
++P+H +A GH LI G V+ + ++PLH ++ I + +GA+++
Sbjct: 4 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 63
Query: 735 PVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLG 794
VT TPL A G + V L+++GA+V ++L +P+H+A+++G V ++ L+
Sbjct: 64 GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA-SPIHEAARRGHVECVNSLIA 122
Query: 795 AGA 797
G
Sbjct: 123 YGG 125
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 13/99 (13%)
Query: 741 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 800
++P+H A+ G +R L+ G VN T +PLH+A G + + +LL GAQ N
Sbjct: 4 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 63
Query: 801 AT-----TNLF--C------CATILVKNGAEIDPVTKLS 826
T LF C C +L+++GA + P + L+
Sbjct: 64 GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA 102
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 114/249 (45%), Gaps = 43/249 (17%)
Query: 92 SLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKG 151
+++ ++P++ AA H +R L+S+G + T +++PLH AC G ++ V++L+ G
Sbjct: 56 AVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHG 115
Query: 152 ANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATR 211
A + T D TPL A SG + +++L++ GA++ ++ + +P+H A++ H
Sbjct: 116 AQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVN 174
Query: 212 VLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKN 271
LI +G +D H SH G TPL++AC+
Sbjct: 175 SLIAYGGNID----------HKISHLG-----------------------TPLYLACENQ 201
Query: 272 RYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATT 331
+ K LL+ AD N + +PLH + ++ LL+ +GA A
Sbjct: 202 QRA--------CVKKLLESGADVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKN 252
Query: 332 ESGLTPLHV 340
G P+ +
Sbjct: 253 AEGKRPVEL 261
Score = 75.9 bits (185), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 108/231 (46%), Gaps = 16/231 (6%)
Query: 298 ALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAG 357
A++ ++P+H A + L+ G ++ T ++PLH A G ++ LL+ G
Sbjct: 56 AVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHG 115
Query: 358 AAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSAS 417
A + T TPL A + D V +LL++GASV + + +P+H A+ RR
Sbjct: 116 AQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAA--RRGHVEC 172
Query: 418 QSALTRVRGE---------TPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASR 468
++L G TPL+LA Q V+ LL +GA V+ +D +PLH R
Sbjct: 173 VNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQD-SPLHAVVR 231
Query: 469 LGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTE-SGASI 518
+ ++A LL+ GA A +G + + E +A + E GAS+
Sbjct: 232 TASEELACLLMDFGADTQAKNAEGKRPVELVPPE--SPLAQLFLEREGASL 280
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 106/231 (45%), Gaps = 19/231 (8%)
Query: 424 VRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGA 483
V +P+H AA +R L+ G +V+ + +PLH A G+ +LL+HGA
Sbjct: 57 VSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGA 116
Query: 484 SVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQM 543
V+ T D +T L + G + ++L + GAS+ + +P+H AA+ G ++
Sbjct: 117 QVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA-SPIHEAARRGHVECVNS 175
Query: 544 LLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDS 603
L+ +D K++ + TPL+LA + + + LL+ A V+
Sbjct: 176 LIAYGGNIDH--KISHL---------------GTPLYLACENQQRACVKKLLESGADVN- 217
Query: 604 QGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQM 654
QGK +PLH + +A LL+D GA A G P+ + ++ +
Sbjct: 218 QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPL 268
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 94/202 (46%), Gaps = 2/202 (0%)
Query: 576 FTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPH 635
++P+H AA +G + L+ + V+ + V+PLH A H + +LL GA +
Sbjct: 60 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 119
Query: 636 AVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIE 695
V + +TPL A D LL++ A ES +P+H +A+ GH + + LI
Sbjct: 120 GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA-SPIHEAARRGHVECVNSLIA 178
Query: 696 HGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNM 755
+G + H+ + TPL+L + + + +GA+++ K +PLH +
Sbjct: 179 YGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVVRTASEEL 237
Query: 756 VRYLVENGANVNATTNLGYTPL 777
L++ GA+ A G P+
Sbjct: 238 ACLLMDFGADTQAKNAEGKRPV 259
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 86/186 (46%), Gaps = 2/186 (1%)
Query: 81 LVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGK 140
L+ G +N+ + + +PL+ A H V+ LL G T TPL AC G
Sbjct: 78 LISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGS 137
Query: 141 VAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHM 200
V LL+ GA+++ ++ D +P+H AAR GH ++ LI G + K + PL++
Sbjct: 138 WDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYL 196
Query: 201 ASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNG 260
A + A + L+ GA V++ + LH +A L+D AD A+ G
Sbjct: 197 ACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEG 255
Query: 261 FTPLHI 266
P+ +
Sbjct: 256 KRPVEL 261
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/296 (25%), Positives = 114/296 (38%), Gaps = 74/296 (25%)
Query: 195 LAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPN 254
+P+H A+ H+ + R LI G V+ IT D+++ LH A
Sbjct: 60 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEA-------------------- 99
Query: 255 ARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRY 314
L G H++C K LL A N + TPL AC +
Sbjct: 100 --CLGG----HLSC---------------VKILLKHGAQVNGVTADWHTPLFNACVSGSW 138
Query: 315 KVVELLLKYGASIAATTESGL-TPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHL 373
V LLL++GAS+ ES L +P+H A+ G + L+ G D TPL+L
Sbjct: 139 DCVNLLLQHGASV--QPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYL 196
Query: 374 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLA 433
A Q V+ LL +GA V+ +D +PLH
Sbjct: 197 ACENQQRACVKKLLESGADVNQGKGQD---------------------------SPLHAV 229
Query: 434 ARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQ-HGASVDAP 488
R ++ +L+ GA A+ E + P+ + +A L L+ GAS+ P
Sbjct: 230 VRTASEELACLLMDFGADTQAKNAEGKRPVELVPP--ESPLAQLFLEREGASLPKP 283
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 92/187 (49%), Gaps = 8/187 (4%)
Query: 610 TPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNA 669
+P+H A+ + HQ L+ +G + + + + +PLH A + LL++ A+ N
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 120
Query: 670 ESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGL-TPLHLCAQEDKVNVATITMF 728
+ TPL + G D +LL++HGA+V Q ++ L +P+H A+ V +
Sbjct: 121 VTADWHTPLFNACVSGSWDCVNLLLQHGASV--QPESDLASPIHEAARRGHVECVNSLIA 178
Query: 729 NGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLH----QASQQG 784
G ID TPL++A Q V+ L+E+GA+VN +PLH AS++
Sbjct: 179 YGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQD-SPLHAVVRTASEEL 237
Query: 785 RVLIIDL 791
L++D
Sbjct: 238 ACLLMDF 244
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 99/235 (42%), Gaps = 22/235 (9%)
Query: 526 FTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKY 585
++P+H AA +G Q+ L+ L G ++ T +PLH A
Sbjct: 60 WSPMHEAAIHGH----QLSLRN-------------LISQGWAVNIITADHVSPLHEACLG 102
Query: 586 GRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPL 645
G + ++LL+ A V+ + TPL A + LLL GAS + +P+
Sbjct: 103 GHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP-ESDLASPI 161
Query: 646 HIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAK 705
H AA++ ++ +L+ Y + + TPL+L+ + L+E GA V+ Q K
Sbjct: 162 HEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGK 220
Query: 706 NGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIA---SHFGQLNMVR 757
+PLH + +A + M GA+ G P+ + S QL + R
Sbjct: 221 GQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQLFLER 275
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 66/123 (53%), Gaps = 1/123 (0%)
Query: 675 FTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEID 734
++P+H +A GH LI G V+ + ++PLH ++ I + +GA+++
Sbjct: 60 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 119
Query: 735 PVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLG 794
VT TPL A G + V L+++GA+V ++L +P+H+A+++G V ++ L+
Sbjct: 120 GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA-SPIHEAARRGHVECVNSLIA 178
Query: 795 AGA 797
G
Sbjct: 179 YGG 181
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 13/99 (13%)
Query: 741 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 800
++P+H A+ G +R L+ G VN T +PLH+A G + + +LL GAQ N
Sbjct: 60 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 119
Query: 801 AT-----TNLF--C------CATILVKNGAEIDPVTKLS 826
T LF C C +L+++GA + P + L+
Sbjct: 120 GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA 158
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 730 GAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLII 789
G ++ +T +PLH A G L+ V+ L+++GA VN T +TPL A G +
Sbjct: 82 GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCV 141
Query: 790 DLLL--GAGAQPNA 801
+LLL GA QP +
Sbjct: 142 NLLLQHGASVQPES 155
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 114/240 (47%), Gaps = 6/240 (2%)
Query: 525 GFTPLHLAA-KYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKK-GFTPLHLA 582
G TPL +AA + G + + + + DS +V S L GA + AT K G T LHLA
Sbjct: 2 GLTPLMIAAVRGGGLDTGEDIENNE---DSTAQVISDLLAQGAELNATMDKTGETSLHLA 58
Query: 583 AKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNV-ALLLLDRGASPHAVAKNG 641
A++ R A+ LL A +SQ G TPLH A D V +LL +R + +A +G
Sbjct: 59 ARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDG 118
Query: 642 YTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVS 701
TPL +AA+ + L+ +A NA +G T LH +A +T+ ++L+ H A
Sbjct: 119 TTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRD 178
Query: 702 HQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVE 761
Q TPL L A+E + + N A + P +AS ++VR L E
Sbjct: 179 AQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLLDE 238
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 117/261 (44%), Gaps = 43/261 (16%)
Query: 301 GFTPLHIAC---------------KKNRYKVVELLLKYGASIAATTE-SGLTPLHVASFM 344
G TPL IA + + +V+ LL GA + AT + +G T LH+A+
Sbjct: 2 GLTPLMIAAVRGGGLDTGEDIENNEDSTAQVISDLLAQGAELNATMDKTGETSLHLAARF 61
Query: 345 GCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGAS-VDARAREDQTP 403
+ A LL AGA ++ G TPLH A A+ + +ILLRN A+ ++AR +
Sbjct: 62 ARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHD---- 117
Query: 404 LHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPL 463
G TPL LAAR +V L+ A ++A +T L
Sbjct: 118 ----------------------GTTPLILAARLAIEGMVEDLITADADINAADNSGKTAL 155
Query: 464 HVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTK 523
H A+ + N + ++LL H A+ DA T L ++A+EG E + L ++ A+ T
Sbjct: 156 HWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDH 215
Query: 524 KGFTPLHLAAKYGRMKIAQML 544
P +A++ I ++L
Sbjct: 216 MDRLPRDVASERLHHDIVRLL 236
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 91/196 (46%), Gaps = 27/196 (13%)
Query: 287 LLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGAS-IAATTESGLTPLHVASFMG 345
LLD AD N++ G TPLH A + V ++LL+ A+ + A G TPL +A+ +
Sbjct: 70 LLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLA 129
Query: 346 CMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLH 405
+ L+ A A + A G+T LH AA N T+ V ILL + A+ DA+ +D
Sbjct: 130 IEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKD----- 184
Query: 406 VASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHV 465
ETPL LAAR + + LL N A+ + D+ P V
Sbjct: 185 ---------------------ETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDV 223
Query: 466 ASRLGNGDIASLLLQH 481
AS + DI LL +H
Sbjct: 224 ASERLHHDIVRLLDEH 239
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 111/252 (44%), Gaps = 32/252 (12%)
Query: 461 TPLHVASRLGNG---------------DIASLLLQHGASVDAPT-KDGYTALHISAKEGQ 504
TPL +A+ G G + S LL GA ++A K G T+LH++A+ +
Sbjct: 4 TPLMIAAVRGGGLDTGEDIENNEDSTAQVISDLLAQGAELNATMDKTGETSLHLAARFAR 63
Query: 505 DEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTES 564
+ A L ++GA + G TPLH A M + Q+LL+ A
Sbjct: 64 ADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRAT-------------- 109
Query: 565 GASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVA 624
++ A G TPL LAA+ + + L+ DA +++ +G T LH A+ ++
Sbjct: 110 --NLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAV 167
Query: 625 LLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQE 684
+LL A+ A TPL +AA++ + + LL+ A P ++++
Sbjct: 168 NILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASER 227
Query: 685 GHTDMSSLLIEH 696
H D+ LL EH
Sbjct: 228 LHHDIVRLLDEH 239
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 86/182 (47%), Gaps = 9/182 (4%)
Query: 229 TALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLL 288
T+LH+A+ AK LLD AD N++ G TPLH A + + V + LL
Sbjct: 53 TSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVA--------ADAMGVFQILL 104
Query: 289 -DRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCM 347
+R + NAR +G TPL +A + +VE L+ A I A SG T LH A+ +
Sbjct: 105 RNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNT 164
Query: 348 NIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVA 407
LL A D + ETPL LAAR + + LL N A+ + D+ P VA
Sbjct: 165 EAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVA 224
Query: 408 SR 409
S
Sbjct: 225 SE 226
Score = 66.2 bits (160), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 100/231 (43%), Gaps = 43/231 (18%)
Query: 334 GLTPLHVASFMG----------------CMNIAIFLLQAGAAPDTATVRGETPLHLAARA 377
GLTPL +A+ G I+ L Q T GET LHLAAR
Sbjct: 2 GLTPLMIAAVRGGGLDTGEDIENNEDSTAQVISDLLAQGAELNATMDKTGETSLHLAARF 61
Query: 378 NQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARAN 437
+ D + LL GA ++ +D T G TPLH A A+
Sbjct: 62 ARADAAKRLLDAGADANS---QDNT-----------------------GRTPLHAAVAAD 95
Query: 438 QTDIVRILLRNGAS-VDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTAL 496
+ +ILLRN A+ ++AR + TPL +A+RL + L+ A ++A G TAL
Sbjct: 96 AMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTAL 155
Query: 497 HISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQK 547
H +A E +IL A+ A K TPL LAA+ G + ++ LL
Sbjct: 156 HWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDN 206
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 101/235 (42%), Gaps = 17/235 (7%)
Query: 575 GFTPLHLAAKYG---------------RMKIAQMLLQKDAPVD-SQGKNGVTPLHVASHY 618
G TPL +AA G ++ LL + A ++ + K G T LH+A+ +
Sbjct: 2 GLTPLMIAAVRGGGLDTGEDIENNEDSTAQVISDLLAQGAELNATMDKTGETSLHLAARF 61
Query: 619 DHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKP-NAESKAGFTP 677
+ A LLD GA ++ G TPLH A + M + LL A NA G TP
Sbjct: 62 ARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTP 121
Query: 678 LHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVT 737
L L+A+ M LI A ++ +G T LH A + I + + A D
Sbjct: 122 LILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQD 181
Query: 738 KAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLL 792
TPL +A+ G + L++N AN T ++ P AS++ I+ LL
Sbjct: 182 DKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 236
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 78/170 (45%), Gaps = 17/170 (10%)
Query: 641 GYTPLHIAAKK-----------NQMD----IATTLLEYNAKPNAE-SKAGFTPLHLSAQE 684
G TPL IAA + N D + + LL A+ NA K G T LHL+A+
Sbjct: 2 GLTPLMIAAVRGGGLDTGEDIENNEDSTAQVISDLLAQGAELNATMDKTGETSLHLAARF 61
Query: 685 GHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGA-EIDPVTKAGFTP 743
D + L++ GA + Q G TPLH D + V I + N A ++ G TP
Sbjct: 62 ARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTP 121
Query: 744 LHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLL 793
L +A+ MV L+ A++NA N G T LH A+ +++LL
Sbjct: 122 LILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILL 171
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 86/184 (46%), Gaps = 5/184 (2%)
Query: 74 QEEVAKILVD---NGATIN-VQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNI 129
++ A+++ D GA +N G T L++AA+ + LL G +
Sbjct: 26 EDSTAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGR 85
Query: 130 TPLHVACKWGKVAMVELLI-SKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALY 188
TPLH A + + ++L+ ++ N+ A+ DG TPL AAR + +++ LI A +
Sbjct: 86 TPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADIN 145
Query: 189 SKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLD 248
+ +G LH A+ ++ A +L+ H A D T L +A+ G +K LLD
Sbjct: 146 AADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLD 205
Query: 249 RKAD 252
A+
Sbjct: 206 NFAN 209
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 109/247 (44%), Gaps = 27/247 (10%)
Query: 95 GFTPLYMAA------------QENHDG---VVRYLLSKGG--NQTLATEHNITPLHVACK 137
G TPL +AA + N D V+ LL++G N T+ + T LH+A +
Sbjct: 2 GLTPLMIAAVRGGGLDTGEDIENNEDSTAQVISDLLAQGAELNATM-DKTGETSLHLAAR 60
Query: 138 WGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAA-LYSKTKNGLA 196
+ + + L+ GA+ ++ G TPLH A + V IL+ A L ++ +G
Sbjct: 61 FARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTT 120
Query: 197 PLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNAR 256
PL +A++ E LI A ++ TALH A+ + LL A+ +A+
Sbjct: 121 PLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQ 180
Query: 257 ALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKV 316
TPL +A ++ Y++S K LLD A+ P +A ++ + +
Sbjct: 181 DDKDETPLFLAAREGSYEAS--------KALLDNFANREITDHMDRLPRDVASERLHHDI 232
Query: 317 VELLLKY 323
V LL ++
Sbjct: 233 VRLLDEH 239
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 689 MSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIAS 748
+S LL + + K G T LHL A+ + + A + GA+ + G TPLH A
Sbjct: 33 ISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAV 92
Query: 749 HFGQLNMVRYLVENGA-NVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTN 804
+ + + L+ N A N+NA + G TPL A++ +++ L+ A A NA N
Sbjct: 93 AADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADN 149
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 79.3 bits (194), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 113/240 (47%), Gaps = 12/240 (5%)
Query: 569 TATTKKGFTPLHLAAKYGRM----KIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVA 624
T + G TPLH+A G + ++ + Q +D TPLH+A +V
Sbjct: 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVV 62
Query: 625 LLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKA----GFTPLHL 680
LL+ GASP A+ ++G T H+A + LL+ A + +A G T LH+
Sbjct: 63 RLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHV 122
Query: 681 SAQEGHTDMSSLLIEHGATVSH-QAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKA 739
+ + LL+E GA + K+G +PL + + +++ + + +GA ++ +
Sbjct: 123 AVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYS 182
Query: 740 GFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP 799
G + LH AS G L +VR LV +GA+ + TPL A + +ID+L G +P
Sbjct: 183 GSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRR---VIDILRGKATRP 239
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 117/257 (45%), Gaps = 31/257 (12%)
Query: 490 KDGYTALHISAKEGQ----DEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLL 545
+DG T LHI+ +G + ++ + G + TPLHLA
Sbjct: 7 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAV------------ 54
Query: 546 QKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAP--VDS 603
+ + V +L +GAS A + G T HLA ++ + LL AP +D
Sbjct: 55 -----ITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDL 109
Query: 604 QGKN--GVTPLHVASHYDHQNVALLLLDRGASPHAV-AKNGYTPLHIAAKKNQMDIATTL 660
+ +N G+T LHVA + + Q LLL+RGA AV K+G +PL A + N + + L
Sbjct: 110 EARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLL 169
Query: 661 LEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKV 720
L++ A NA+ +G + LH ++ G + L+ GA S + + TPL + A+ +V
Sbjct: 170 LQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPL-MVARSRRV 228
Query: 721 NVATITMFNGAEIDPVT 737
I + G P +
Sbjct: 229 ----IDILRGKATRPAS 241
Score = 75.9 bits (185), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 97/217 (44%), Gaps = 16/217 (7%)
Query: 332 ESGLTPLHVASFMGCM----NIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILL 387
E G TPLH+A G + + Q G D +TPLHLA +VR+L+
Sbjct: 7 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV 66
Query: 388 RNGASVDARAREDQTPLHVASRLRR-------FSSASQSALT----RVRGETPLHLAARA 436
GAS A R QT H+A R SA+ L G T LH+A
Sbjct: 67 TAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT 126
Query: 437 NQTDIVRILLRNGASVDA-RAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTA 495
+ V++LL GA +DA + ++PL A + + LLLQHGA+V+A G +A
Sbjct: 127 ECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSA 186
Query: 496 LHISAKEGQDEVASILTESGASITATTKKGFTPLHLA 532
LH ++ G + L SGA + TPL +A
Sbjct: 187 LHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVA 223
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 109/234 (46%), Gaps = 17/234 (7%)
Query: 160 DGLTPLHCAARSGH----DNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIY 215
DG TPLH A G+ ++++ + G L PLH+A + R+L+
Sbjct: 8 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 67
Query: 216 HGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKA----DPNARALNGFTPLHIACKKN 271
GA + TA H+A + LLD A D AR +G T LH+A
Sbjct: 68 AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAV--- 124
Query: 272 RYKSSHCNHVWVAKTLLDRKADPNARAL-NGFTPLHIACKKNRYKVVELLLKYGASIAAT 330
++ C + LL+R AD +A + +G +PL A + N +V+LLL++GA++ A
Sbjct: 125 ---NTECQET--VQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQ 179
Query: 331 TESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVR 384
SG + LH AS G + + L+++GA +TPL +A DI+R
Sbjct: 180 MYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 233
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 90/176 (51%), Gaps = 5/176 (2%)
Query: 97 TPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGA---- 152
TPL++A VVR L++ G + H T H+AC+ + L+ A
Sbjct: 48 TPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTL 107
Query: 153 NIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS-KTKNGLAPLHMASQGDHEAATR 211
++EA+ DGLT LH A + + +L+E+GA + + K+G +PL A + + + +
Sbjct: 108 DLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ 167
Query: 212 VLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIA 267
+L+ HGA V+ +ALH AS G + + +TL+ AD + + + TPL +A
Sbjct: 168 LLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVA 223
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 113/241 (46%), Gaps = 18/241 (7%)
Query: 192 KNGLAPLHMAS-QGDHEAATRVLIYHGAGVDEITVD---YLTALHVASHCGHVRVAKTLL 247
++G PLH+A QG+ A R++ G E+ + T LH+A V + L+
Sbjct: 7 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV 66
Query: 248 DRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKA----DPNARALNGFT 303
A P A +G T H+AC+ ++S C + LLD A D AR +G T
Sbjct: 67 TAGASPMALDRHGQTAAHLACE---HRSPTC-----LRALLDSAAPGTLDLEARNYDGLT 118
Query: 304 PLHIACKKNRYKVVELLLKYGASI-AATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDT 362
LH+A + V+LLL+ GA I A +SG +PL A +++ LLQ GA +
Sbjct: 119 ALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNA 178
Query: 363 ATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALT 422
G + LH A+ +VR L+R+GA + + TPL VA R RR + T
Sbjct: 179 QMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVA-RSRRVIDILRGKAT 237
Query: 423 R 423
R
Sbjct: 238 R 238
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 102/230 (44%), Gaps = 19/230 (8%)
Query: 455 RARED-QTPLHVASRLGN----GDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVAS 509
RA ED TPLH+A GN + +L Q G +D T LH++ V
Sbjct: 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVR 63
Query: 510 ILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASIT 569
+L +GAS A + G T HLA ++ + LL AP +
Sbjct: 64 LLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAP-------------GTLDLE 110
Query: 570 ATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQG-KNGVTPLHVASHYDHQNVALLLL 628
A G T LH+A + Q+LL++ A +D+ K+G +PL A + ++ LLL
Sbjct: 111 ARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLL 170
Query: 629 DRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPL 678
GA+ +A +G + LH A+ + + + TL+ A + ++ TPL
Sbjct: 171 QHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPL 220
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 86/194 (44%), Gaps = 20/194 (10%)
Query: 262 TPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLL 321
TPLH+A V + L+ A P A +G T H+AC+ + LL
Sbjct: 48 TPLHLAVITTLPS--------VVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALL 99
Query: 322 KYGA----SIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVR-GETPLHLAAR 376
A + A GLT LHVA C LL+ GA D ++ G +PL A
Sbjct: 100 DSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVE 159
Query: 377 ANQTDIVRILLRNGASVDARAREDQTPLHVAS-----RLRR--FSSASQSALTRVRGETP 429
N +V++LL++GA+V+A+ + LH AS L R S + S+L +TP
Sbjct: 160 NNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTP 219
Query: 430 LHLAARANQTDIVR 443
L +A DI+R
Sbjct: 220 LMVARSRRVIDILR 233
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 78/173 (45%), Gaps = 11/173 (6%)
Query: 639 KNGYTPLHIAAKKNQMDIATTLLEYNAKPNAE----SKAGFTPLHLSAQEGHTDMSSLLI 694
++G TPLHIA + + L+ + E + TPLHL+ + LL+
Sbjct: 7 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV 66
Query: 695 EHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGA-----EIDPVTKAGFTPLHIASH 749
GA+ ++G T HL A E + + + A +++ G T LH+A +
Sbjct: 67 TAGASPMALDRHGQTAAHL-ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVN 125
Query: 750 FGQLNMVRYLVENGANVNAT-TNLGYTPLHQASQQGRVLIIDLLLGAGAQPNA 801
V+ L+E GA+++A G +PL A + + ++ LLL GA NA
Sbjct: 126 TECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNA 178
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 66/128 (51%), Gaps = 5/128 (3%)
Query: 79 KILVDNGA--TINVQSLN--GFTPLYMAAQENHDGVVRYLLSKGGN-QTLATEHNITPLH 133
+ L+D+ A T+++++ N G T L++A V+ LL +G + + + +PL
Sbjct: 96 RALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLI 155
Query: 134 VACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKN 193
A + ++MV+LL+ GAN+ A+ G + LH A+ G ++ L+ GA K +
Sbjct: 156 HAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCH 215
Query: 194 GLAPLHMA 201
PL +A
Sbjct: 216 NDTPLMVA 223
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
Query: 75 EEVAKILVDNGATIN-VQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLH 133
+E ++L++ GA I+ V +G +PL A + N +V+ LL G N + LH
Sbjct: 129 QETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALH 188
Query: 134 VACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEK 183
A G + +V L+ GA+ K TPL ARS VIDIL K
Sbjct: 189 SASGRGLLPLVRTLVRSGADSSLKNCHNDTPL-MVARS--RRVIDILRGK 235
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 96/209 (45%), Gaps = 2/209 (0%)
Query: 555 GKVASILTESGASI-TATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLH 613
G V S GAS+ T + G T LHLAA+Y R A+ LL+ A Q G TPLH
Sbjct: 1 GSVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLH 60
Query: 614 VASHYDHQNV-ALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESK 672
A D Q V +LL +R A +G TPL +AA+ + L+ +A NA
Sbjct: 61 AAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDD 120
Query: 673 AGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAE 732
G + LH +A + D + +L+++GA Q TPL L A+E A + + + A
Sbjct: 121 LGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFAN 180
Query: 733 IDPVTKAGFTPLHIASHFGQLNMVRYLVE 761
D P IA ++VR L E
Sbjct: 181 RDITDHMDRLPRDIAQERMHHDIVRLLDE 209
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 100/205 (48%), Gaps = 27/205 (13%)
Query: 349 IAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVAS 408
I+ F+ Q + + GET LHLAAR +++D + LL AS DA +++
Sbjct: 4 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE--ASADAXIQDNM------- 54
Query: 409 RLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGAS-VDARAREDQTPLHVAS 467
G TPLH A A+ + +ILLRN A+ +DAR + TPL +A+
Sbjct: 55 -----------------GRTPLHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAA 97
Query: 468 RLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFT 527
RL + L+ A V+A G +ALH +A + A +L ++GA+ K T
Sbjct: 98 RLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEET 157
Query: 528 PLHLAAKYGRMKIAQMLLQKDAPVD 552
PL LAA+ G + A++LL A D
Sbjct: 158 PLFLAAREGSYETAKVLLDHFANRD 182
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 96/196 (48%), Gaps = 8/196 (4%)
Query: 213 LIYHGAGV-DEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKN 271
IY GA + ++ TALH+A+ AK LL+ AD + G TPLH A
Sbjct: 7 FIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAV--- 63
Query: 272 RYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATT 331
S+ V+ L +R D +AR +G TPL +A + ++E L+ A + A
Sbjct: 64 ---SADAQGVFQI-LLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVD 119
Query: 332 ESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGA 391
+ G + LH A+ + ++ A+ LL+ GA D + ETPL LAAR + ++LL + A
Sbjct: 120 DLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFA 179
Query: 392 SVDARAREDQTPLHVA 407
+ D D+ P +A
Sbjct: 180 NRDITDHMDRLPRDIA 195
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 100/226 (44%), Gaps = 17/226 (7%)
Query: 472 GDIASLLLQHGASVDAPT-KDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLH 530
G + S + GAS+ T + G TALH++A+ + + A L E+ A G TPLH
Sbjct: 1 GSVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLH 60
Query: 531 LAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKI 590
A D+QG +L + A G TPL LAA+ +
Sbjct: 61 AAV----------------SADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGM 104
Query: 591 AQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAK 650
+ L+ A V++ G + LH A+ ++ + A++LL GA+ TPL +AA+
Sbjct: 105 LEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAR 164
Query: 651 KNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEH 696
+ + A LL++ A + P ++ + H D+ LL E+
Sbjct: 165 EGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEY 210
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 94/194 (48%), Gaps = 19/194 (9%)
Query: 507 VASILTESGASI-TATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESG 565
V S GAS+ T + G T LHLAA+Y R A+ LL+ A Q +
Sbjct: 3 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNM-------- 54
Query: 566 ASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDA-PVDSQGKNGVTPLHVASHYDHQNVA 624
G TPLH A + Q+LL+ A +D++ +G TPL +A+ + +
Sbjct: 55 ---------GRTPLHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGML 105
Query: 625 LLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQE 684
L++ A +AV G + LH AA N +D A LL+ A + ++ TPL L+A+E
Sbjct: 106 EDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAARE 165
Query: 685 GHTDMSSLLIEHGA 698
G + + +L++H A
Sbjct: 166 GSYETAKVLLDHFA 179
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 68/148 (45%), Gaps = 6/148 (4%)
Query: 668 NAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITM 727
N + G T LHL+A+ +D + L+E A Q G TPLH D V I +
Sbjct: 16 NQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILL 75
Query: 728 FNGA-EIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRV 786
N A ++D G TPL +A+ M+ L+ + A+VNA +LG + LH A+ V
Sbjct: 76 RNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNV 135
Query: 787 LIIDLLLGAGAQPNATTN-----LFCCA 809
+LL GA + N LF A
Sbjct: 136 DAAVVLLKNGANKDMQNNKEETPLFLAA 163
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 106/231 (45%), Gaps = 28/231 (12%)
Query: 316 VVELLLKYGASIAATTE-SGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLA 374
V+ + GAS+ T+ +G T LH+A+ + A LL+A A G TPLH A
Sbjct: 3 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAA 62
Query: 375 ARANQTDIVRILLRNGAS-VDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLA 433
A+ + +ILLRN A+ +DAR + G TPL LA
Sbjct: 63 VSADAQGVFQILLRNRATDLDARMHD--------------------------GTTPLILA 96
Query: 434 ARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGY 493
AR ++ L+ + A V+A ++ LH A+ + N D A +LL++GA+ D
Sbjct: 97 ARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEE 156
Query: 494 TALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
T L ++A+EG E A +L + A+ T P +A + I ++L
Sbjct: 157 TPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 207
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 90/185 (48%), Gaps = 16/185 (8%)
Query: 630 RGASPH-AVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTD 688
+GAS H + G T LH+AA+ ++ D A LLE +A + G TPLH +
Sbjct: 10 QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQG 69
Query: 689 MSSLLIEHGAT-VSHQAKNGLTPLHLCAQ-------EDKVNVATITMFNGAEIDPVTKAG 740
+ +L+ + AT + + +G TPL L A+ ED +N + A+++ V G
Sbjct: 70 VFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLIN-------SHADVNAVDDLG 122
Query: 741 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 800
+ LH A+ ++ L++NGAN + N TPL A+++G +LL A +
Sbjct: 123 KSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRD 182
Query: 801 ATTNL 805
T ++
Sbjct: 183 ITDHM 187
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 85/172 (49%), Gaps = 2/172 (1%)
Query: 85 GATINVQS-LNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAM 143
GA+++ Q+ G T L++AA+ + + LL + + TPLH A +
Sbjct: 11 GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGV 70
Query: 144 VELLI-SKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMAS 202
++L+ ++ +++A+ DG TPL AAR + +++ LI A + + G + LH A+
Sbjct: 71 FQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAA 130
Query: 203 QGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPN 254
++ A VL+ +GA D T L +A+ G AK LLD A+ +
Sbjct: 131 AVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRD 182
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 96/217 (44%), Gaps = 16/217 (7%)
Query: 175 NVIDILIEKGAALYSKT-KNGLAPLHMASQ-GDHEAATRVLIYHGAGVDEITVDYL--TA 230
+VI I +GA+L+++T + G LH+A++ +AA R+L A D D + T
Sbjct: 2 SVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLL---EASADAXIQDNMGRTP 58
Query: 231 LHVASHCGHVRVAKTLL-DRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLD 289
LH A V + LL +R D +AR +G TPL +A + + + L++
Sbjct: 59 LHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAAR--------LALEGMLEDLIN 110
Query: 290 RKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNI 349
AD NA G + LH A N +LLK GA+ TPL +A+ G
Sbjct: 111 SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYET 170
Query: 350 AIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRIL 386
A LL A D P +A DIVR+L
Sbjct: 171 AKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 207
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 73/150 (48%), Gaps = 3/150 (2%)
Query: 74 QEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHN-ITPL 132
+ + AK L++ A +Q G TPL+ A + GV + LL A H+ TPL
Sbjct: 34 RSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATDLDARMHDGTTPL 93
Query: 133 HVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTK 192
+A + M+E LI+ A++ A G + LH AA + + +L++ GA +
Sbjct: 94 ILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNN 153
Query: 193 NGLAPLHMAS-QGDHEAATRVLIYHGAGVD 221
PL +A+ +G +E A +VL+ H A D
Sbjct: 154 KEETPLFLAAREGSYETA-KVLLDHFANRD 182
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 47/108 (43%)
Query: 75 EEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHV 134
E + + L+++ A +N G + L+ AA N+ LL G N+ + TPL +
Sbjct: 102 EGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFL 161
Query: 135 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIE 182
A + G ++L+ AN + P A H +++ +L E
Sbjct: 162 AAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDE 209
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 61/107 (57%)
Query: 426 GETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASV 485
G +PLH A R ++ +V +L+ GA ++ R D TPLH+A+ G+ DI LLQ+ A +
Sbjct: 39 GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI 98
Query: 486 DAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLA 532
+A + G LH + GQD+VA L +GA ++ K G P+ A
Sbjct: 99 NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKA 145
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 1/123 (0%)
Query: 99 LYMAAQENHDGVVRYLLSKGGNQ-TLATEHNITPLHVACKWGKVAMVELLISKGANIEAK 157
++ +E + VR L N +H +PLH AC+ G+ A+VE+LI +GA I
Sbjct: 9 IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM 68
Query: 158 TRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHG 217
R TPLH AA GH +++ L++ A + + ++G PLH A + L+ +G
Sbjct: 69 NRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANG 128
Query: 218 AGV 220
A V
Sbjct: 129 ALV 131
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 53/107 (49%)
Query: 301 GFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAP 360
GF+PLH AC++ R VVE+L+ GA I TPLH+A+ G +I LLQ A
Sbjct: 39 GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI 98
Query: 361 DTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVA 407
+ G PLH A Q + L+ NGA V + + P+ A
Sbjct: 99 NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKA 145
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 59/115 (51%)
Query: 674 GFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEI 733
GF+PLH + +EG + + +LI GA ++ + TPLHL A ++ + A+I
Sbjct: 39 GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI 98
Query: 734 DPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLI 788
+ V + G PLH A +GQ + LV NGA V+ G P+ +A R L+
Sbjct: 99 NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELL 153
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 57/124 (45%), Gaps = 17/124 (13%)
Query: 525 GFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAK 584
GF+PLH A + GR + +ML+ + GA I + TPLHLAA
Sbjct: 39 GFSPLHWACREGRSAVVEMLIMR-----------------GARINVMNRGDDTPLHLAAS 81
Query: 585 YGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTP 644
+G I Q LLQ A +++ ++G PLH A + VA L+ GA K G P
Sbjct: 82 HGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMP 141
Query: 645 LHIA 648
+ A
Sbjct: 142 VDKA 145
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 66/150 (44%), Gaps = 9/150 (6%)
Query: 226 DYLTALHVASHCGHVRVAKTLLDR-KADPNARALNGFTPLHIACKKNRYKSSHCNHVWVA 284
+++ + G+ + LD + D N +GF+PLH AC++ R V
Sbjct: 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSA--------VV 55
Query: 285 KTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFM 344
+ L+ R A N TPLH+A +V+ LL+Y A I A E G PLH A F
Sbjct: 56 EMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFW 115
Query: 345 GCMNIAIFLLQAGAAPDTATVRGETPLHLA 374
G +A L+ GA GE P+ A
Sbjct: 116 GQDQVAEDLVANGALVSICNKYGEMPVDKA 145
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
Query: 603 SQGKN-GVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLL 661
+QG + G +PLH A V +L+ RGA + + + TPLH+AA DI LL
Sbjct: 33 NQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLL 92
Query: 662 EYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPL 711
+Y A NA ++ G PLH + G ++ L+ +GA VS K G P+
Sbjct: 93 QYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPV 142
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 57/104 (54%)
Query: 575 GFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASP 634
GF+PLH A + GR + +ML+ + A ++ + TPLH+A+ + H+++ LL A
Sbjct: 39 GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI 98
Query: 635 HAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPL 678
+AV ++G PLH A Q +A L+ A + +K G P+
Sbjct: 99 NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPV 142
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 56/124 (45%), Gaps = 17/124 (13%)
Query: 492 GYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPV 551
G++ LH + +EG+ V +L GA I + TPLHLAA +G I Q LLQ
Sbjct: 39 GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQ----- 93
Query: 552 DSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTP 611
A I A + G PLH A +G+ ++A+ L+ A V K G P
Sbjct: 94 ------------YKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMP 141
Query: 612 LHVA 615
+ A
Sbjct: 142 VDKA 145
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 1/130 (0%)
Query: 73 GQEEVAKILVDNGAT-INVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITP 131
G ++ +DN +N +GF+PL+ A +E VV L+ +G + + TP
Sbjct: 16 GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTP 75
Query: 132 LHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKT 191
LH+A G +V+ L+ A+I A G PLH A G D V + L+ GA +
Sbjct: 76 LHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICN 135
Query: 192 KNGLAPLHMA 201
K G P+ A
Sbjct: 136 KYGEMPVDKA 145
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 55/107 (51%)
Query: 641 GYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATV 700
G++PLH A ++ + + L+ A+ N ++ TPLHL+A GH D+ L+++ A +
Sbjct: 39 GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI 98
Query: 701 SHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIA 747
+ ++G PLH + VA + NGA + K G P+ A
Sbjct: 99 NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKA 145
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Query: 681 SAQEGHTDMSSLLIEHGATVSHQAKN-GLTPLHLCAQEDKVNVATITMFNGAEIDPVTKA 739
+EG+ L +++ +Q + G +PLH +E + V + + GA I+ + +
Sbjct: 12 QCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRG 71
Query: 740 GFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGA 797
TPLH+A+ G ++V+ L++ A++NA G PLH A G+ + + L+ GA
Sbjct: 72 DDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGA 129
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 62/143 (43%), Gaps = 20/143 (13%)
Query: 442 VRILLRNGASVDARAREDQ--TPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHIS 499
VR+ L N + D +D +PLH A R G + +L+ GA ++ + T LH++
Sbjct: 21 VRLWLDNTEN-DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLA 79
Query: 500 AKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVAS 559
A G ++ L + A I A + G PLH A +G Q +VA
Sbjct: 80 ASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWG-----------------QDQVAE 122
Query: 560 ILTESGASITATTKKGFTPLHLA 582
L +GA ++ K G P+ A
Sbjct: 123 DLVANGALVSICNKYGEMPVDKA 145
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 132 LHVACKWGKVAMVELLISKGANIEAKTRD-GLTPLHCAARSGHDNVIDILIEKGAALYSK 190
+ C+ G V L + N + D G +PLH A R G V+++LI +GA +
Sbjct: 9 IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM 68
Query: 191 TKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLL 247
+ PLH+A+ H + L+ + A ++ + LH A G +VA+ L+
Sbjct: 69 NRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLV 125
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 53/126 (42%), Gaps = 26/126 (20%)
Query: 367 GETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRG 426
G +PLH A R ++ +V +L+ GA ++ R D TP
Sbjct: 39 GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTP----------------------- 75
Query: 427 ETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVD 486
LHLAA DIV+ LL+ A ++A PLH A G +A L+ +GA V
Sbjct: 76 ---LHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVS 132
Query: 487 APTKDG 492
K G
Sbjct: 133 ICNKYG 138
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 40/75 (53%)
Query: 194 GLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADP 253
G +PLH A + A +LI GA ++ + T LH+A+ GH + + LL KAD
Sbjct: 39 GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI 98
Query: 254 NARALNGFTPLHIAC 268
NA +G PLH AC
Sbjct: 99 NAVNEHGNVPLHYAC 113
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 31/64 (48%)
Query: 740 GFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP 799
GF+PLH A G+ +V L+ GA +N TPLH A+ G I+ LL A
Sbjct: 39 GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI 98
Query: 800 NATT 803
NA
Sbjct: 99 NAVN 102
Score = 35.8 bits (81), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 756 VRYLVENGAN-VNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 800
VR ++N N +N + G++PLH A ++GR ++++L+ GA+ N
Sbjct: 21 VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN 66
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 99/216 (45%), Gaps = 7/216 (3%)
Query: 548 DAPVDSQGKVASILTESGASI-TATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGK 606
DAP V S GAS+ T + G T LHLAA+Y R A+ LL+ A + Q
Sbjct: 2 DAPA-----VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDN 56
Query: 607 NGVTPLHVASHYDHQNV-ALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNA 665
G TPLH A D Q V +L+ +R A +G TPL +AA+ + L+ +A
Sbjct: 57 MGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA 116
Query: 666 KPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATI 725
NA G + LH +A + D + +L+++GA Q TPL L A+E A +
Sbjct: 117 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKV 176
Query: 726 TMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVE 761
+ + A D P IA ++VR L E
Sbjct: 177 LLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDE 212
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 98/198 (49%), Gaps = 27/198 (13%)
Query: 349 IAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVAS 408
I+ F+ Q + + GET LHLAAR +++D + LL AS DA +++
Sbjct: 7 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE--ASADANIQDNM------- 57
Query: 409 RLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGAS-VDARAREDQTPLHVAS 467
G TPLH A A+ + +IL+RN A+ +DAR + TPL +A+
Sbjct: 58 -----------------GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAA 100
Query: 468 RLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFT 527
RL + L+ A V+A G +ALH +A + A +L ++GA+ + T
Sbjct: 101 RLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREET 160
Query: 528 PLHLAAKYGRMKIAQMLL 545
PL LAA+ G + A++LL
Sbjct: 161 PLFLAAREGSYETAKVLL 178
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 100/206 (48%), Gaps = 10/206 (4%)
Query: 204 GDHEAATRVLIYHGAGV-DEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFT 262
GD A IY GA + ++ TALH+A+ AK LL+ AD N + G T
Sbjct: 1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRT 60
Query: 263 PLHIACKKNRYKSSHCNHVWVAKTLL-DRKADPNARALNGFTPLHIACKKNRYKVVELLL 321
PLH A + V + L+ +R D +AR +G TPL +A + ++E L+
Sbjct: 61 PLHAAVS--------ADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLI 112
Query: 322 KYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTD 381
A + A + G + LH A+ + ++ A+ LL+ GA D R ETPL LAAR +
Sbjct: 113 NSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYE 172
Query: 382 IVRILLRNGASVDARAREDQTPLHVA 407
++LL + A+ D D+ P +A
Sbjct: 173 TAKVLLDHFANRDITDHMDRLPRDIA 198
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 101/231 (43%), Gaps = 17/231 (7%)
Query: 474 IASLLLQHGASVDAPT-KDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLA 532
+ S + GAS+ T + G TALH++A+ + + A L E+ A G TPLH A
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 65
Query: 533 AKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQ 592
D+QG ++ + A G TPL LAA+ + +
Sbjct: 66 VS----------------ADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLE 109
Query: 593 MLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKN 652
L+ A V++ G + LH A+ ++ + A++LL GA+ TPL +AA++
Sbjct: 110 DLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREG 169
Query: 653 QMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQ 703
+ A LL++ A + P ++ + H D+ LL E+ S Q
Sbjct: 170 SYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQ 220
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 91/185 (49%), Gaps = 16/185 (8%)
Query: 630 RGASPH-AVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTD 688
+GAS H + G T LH+AA+ ++ D A LLE +A N + G TPLH +
Sbjct: 13 QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQG 72
Query: 689 MSSLLIEHGAT-VSHQAKNGLTPLHLCAQ-------EDKVNVATITMFNGAEIDPVTKAG 740
+ +LI + AT + + +G TPL L A+ ED +N + A+++ V G
Sbjct: 73 VFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN-------SHADVNAVDDLG 125
Query: 741 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 800
+ LH A+ ++ L++NGAN + N TPL A+++G +LL A +
Sbjct: 126 KSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD 185
Query: 801 ATTNL 805
T ++
Sbjct: 186 ITDHM 190
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 69/148 (46%), Gaps = 6/148 (4%)
Query: 668 NAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITM 727
N + G T LHL+A+ +D + L+E A + Q G TPLH D V I +
Sbjct: 19 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 78
Query: 728 FNGA-EIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRV 786
N A ++D G TPL +A+ M+ L+ + A+VNA +LG + LH A+ V
Sbjct: 79 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNV 138
Query: 787 LIIDLLLGAGAQPNATTN-----LFCCA 809
+LL GA + N LF A
Sbjct: 139 DAAVVLLKNGANKDMQNNREETPLFLAA 166
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 107/231 (46%), Gaps = 28/231 (12%)
Query: 316 VVELLLKYGASIAATTE-SGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLA 374
V+ + GAS+ T+ +G T LH+A+ + A LL+A A + G TPLH A
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 65
Query: 375 ARANQTDIVRILLRNGAS-VDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLA 433
A+ + +IL+RN A+ +DAR + G TPL LA
Sbjct: 66 VSADAQGVFQILIRNRATDLDARMHD--------------------------GTTPLILA 99
Query: 434 ARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGY 493
AR ++ L+ + A V+A ++ LH A+ + N D A +LL++GA+ D
Sbjct: 100 ARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREE 159
Query: 494 TALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
T L ++A+EG E A +L + A+ T P +A + I ++L
Sbjct: 160 TPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 210
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 82/166 (49%), Gaps = 2/166 (1%)
Query: 85 GATINVQS-LNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAM 143
GA+++ Q+ G T L++AA+ + + LL + + TPLH A +
Sbjct: 14 GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGV 73
Query: 144 VELLI-SKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMAS 202
++LI ++ +++A+ DG TPL AAR + +++ LI A + + G + LH A+
Sbjct: 74 FQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAA 133
Query: 203 QGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLD 248
++ A VL+ +GA D T L +A+ G AK LLD
Sbjct: 134 AVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLD 179
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 93/246 (37%), Gaps = 41/246 (16%)
Query: 142 AMVELLISKGANIEAKT-RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHM 200
A++ I +GA++ +T R G T LH AAR + L+E A + G PLH
Sbjct: 5 AVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHA 64
Query: 201 ASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNG 260
A D + ++LI +R D +AR +G
Sbjct: 65 AVSADAQGVFQILIR--------------------------------NRATDLDARMHDG 92
Query: 261 FTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELL 320
TPL +A + + + L++ AD NA G + LH A N +L
Sbjct: 93 TTPLILAAR--------LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 144
Query: 321 LKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQT 380
LK GA+ TPL +A+ G A LL A D P +A
Sbjct: 145 LKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHH 204
Query: 381 DIVRIL 386
DIVR+L
Sbjct: 205 DIVRLL 210
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 74/150 (49%), Gaps = 3/150 (2%)
Query: 74 QEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHN-ITPL 132
+ + AK L++ A N+Q G TPL+ A + GV + L+ A H+ TPL
Sbjct: 37 RSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL 96
Query: 133 HVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTK 192
+A + M+E LI+ A++ A G + LH AA + + +L++ GA +
Sbjct: 97 ILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNN 156
Query: 193 NGLAPLHMAS-QGDHEAATRVLIYHGAGVD 221
PL +A+ +G +E A +VL+ H A D
Sbjct: 157 REETPLFLAAREGSYETA-KVLLDHFANRD 185
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 47/108 (43%)
Query: 75 EEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHV 134
E + + L+++ A +N G + L+ AA N+ LL G N+ + TPL +
Sbjct: 105 EGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFL 164
Query: 135 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIE 182
A + G ++L+ AN + P A H +++ +L E
Sbjct: 165 AAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDE 212
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 105/211 (49%), Gaps = 8/211 (3%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGG-NQTLATEHNITP 131
G E + LV+ G + T L+ AA N +V+Y +SKG L + N TP
Sbjct: 20 GIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTP 79
Query: 132 LHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKT 191
LH A + G ++MV L+ GA+ +G + +H AA+ GH +++ LI KG +
Sbjct: 80 LHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMD 139
Query: 192 KNGLAPLHMASQGDHEA-ATRVLIYHGAGV---DEITVDYLTALHVASHCGHVRVAKTLL 247
+NG+ PL A+ H TR+L+ V D+ + TALH A G+ V LL
Sbjct: 140 QNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKN--TALHWAVLAGNTTVISLLL 197
Query: 248 DRKADPNARALNGFTPLHIA-CKKNRYKSSH 277
+ A+ +A+ + G + L +A +KN + +H
Sbjct: 198 EAGANVDAQNIKGESALDLAKQRKNVWMINH 228
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 102/214 (47%), Gaps = 3/214 (1%)
Query: 582 AAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKN- 640
A +YG + + L++ V K VT LH A+ + ++ + +GA + +
Sbjct: 16 ATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDL 75
Query: 641 GYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATV 700
TPLH A ++ + + L++Y A P+ G + +HL+AQ GHT + + LI G V
Sbjct: 76 NSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV 135
Query: 701 SHQAKNGLTPLHLCA-QEDKVNVATITMFNGAEIDPVTKA-GFTPLHIASHFGQLNMVRY 758
+NG+TPL A + V+ + + ++ K T LH A G ++
Sbjct: 136 DMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISL 195
Query: 759 LVENGANVNATTNLGYTPLHQASQQGRVLIIDLL 792
L+E GANV+A G + L A Q+ V +I+ L
Sbjct: 196 LLEAGANVDAQNIKGESALDLAKQRKNVWMINHL 229
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 103/234 (44%), Gaps = 20/234 (8%)
Query: 491 DGYTALHI--SAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKD 548
D Y+ I + + G E L E+G + K+ T LH AA R+ + + + K
Sbjct: 6 DDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKG 65
Query: 549 APVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNG 608
A VD + G + +T PLH A + G + + L++ A G
Sbjct: 66 AIVD----------QLGGDLNST------PLHWATRQGHLSMVVQLMKYGADPSLIDGEG 109
Query: 609 VTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAA-KKNQMDIATTLLEYNAKP 667
+ +H+A+ + H ++ L+ +G + +NG TPL AA + + +D LL +N
Sbjct: 110 CSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSV 169
Query: 668 NAESKA-GFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKV 720
N K T LH + G+T + SLL+E GA V Q G + L L Q V
Sbjct: 170 NLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNV 223
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 88/201 (43%), Gaps = 27/201 (13%)
Query: 303 TPLHIACKKNRYKVVELLLKYGASIAATT-ESGLTPLHVASFMGCMNIAIFLLQAGAAPD 361
T LH A NR +V+ + GA + + TPLH A+ G +++ + L++ GA P
Sbjct: 44 TLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPS 103
Query: 362 TATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSAL 421
G + +HLAA+ T IV L+ G VD + TPL A
Sbjct: 104 LIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWA-------------- 149
Query: 422 TRVRGETPLHLAARANQTDIVRILLRNGASVD-ARAREDQTPLHVASRLGNGDIASLLLQ 480
A R + D R+LL SV+ T LH A GN + SLLL+
Sbjct: 150 -----------AYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLE 198
Query: 481 HGASVDAPTKDGYTALHISAK 501
GA+VDA G +AL ++ +
Sbjct: 199 AGANVDAQNIKGESALDLAKQ 219
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 84/176 (47%), Gaps = 19/176 (10%)
Query: 428 TPLHLAARANQTDIVRILLRNGASVDARARE-DQTPLHVASRLGNGDIASLLLQHGASVD 486
T LH AA N+ D+V+ + GA VD + + TPLH A+R G+ + L+++GA
Sbjct: 44 TLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPS 103
Query: 487 APTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAA-KYGRMKIAQMLL 545
+G + +H++A+ G + + L G + + G TPL AA + + ++LL
Sbjct: 104 LIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLL 163
Query: 546 QKDAPVDSQGK-----------------VASILTESGASITATTKKGFTPLHLAAK 584
+ V+ K V S+L E+GA++ A KG + L LA +
Sbjct: 164 TFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQ 219
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 83/182 (45%), Gaps = 11/182 (6%)
Query: 627 LLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNA-ESKAGFTPLHLSAQEG 685
L++ G K T LH AA N++D+ + A + TPLH + ++G
Sbjct: 28 LVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQG 87
Query: 686 HTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLH 745
H M L+++GA S G + +HL AQ ++ + G ++D + + G TPL
Sbjct: 88 HLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLM 147
Query: 746 IASHFGQ-LNMVRYLVENGANVNATTNLG-----YTPLHQASQQGRVLIIDLLLGAGAQP 799
A++ ++ R L+ N + NLG T LH A G +I LLL AGA
Sbjct: 148 WAAYRTHSVDPTRLLL----TFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANV 203
Query: 800 NA 801
+A
Sbjct: 204 DA 205
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 92/203 (45%), Gaps = 13/203 (6%)
Query: 211 RVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKA--DPNARALNGFTPLHIAC 268
R L+ G V + + +T LH A+ + + K + + A D LN TPLH A
Sbjct: 26 RELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNS-TPLHWAT 84
Query: 269 KKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIA 328
++ H+ + L+ ADP+ G + +H+A + +V L+ G +
Sbjct: 85 RQG--------HLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD 136
Query: 329 ATTESGLTPLHVASFMG-CMNIAIFLLQAGAAPDTA-TVRGETPLHLAARANQTDIVRIL 386
++G+TPL A++ ++ LL + + T LH A A T ++ +L
Sbjct: 137 MMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLL 196
Query: 387 LRNGASVDARAREDQTPLHVASR 409
L GA+VDA+ + ++ L +A +
Sbjct: 197 LEAGANVDAQNIKGESALDLAKQ 219
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 681 SAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVT-KA 739
+ Q G + L+E G V K +T LH A +++++ + GA +D +
Sbjct: 16 ATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDL 75
Query: 740 GFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAG 796
TPLH A+ G L+MV L++ GA+ + G + +H A+Q G I+ L+ G
Sbjct: 76 NSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKG 132
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 75.9 bits (185), Expect = 1e-13, Method: Composition-based stats.
Identities = 40/107 (37%), Positives = 61/107 (57%)
Query: 426 GETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASV 485
G +PLH A R ++ +V +L+ GA ++ R D TPLH+A+ G+ DI LLQ+ A +
Sbjct: 34 GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI 93
Query: 486 DAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLA 532
+A + G LH + GQD+VA L +GA ++ K G P+ A
Sbjct: 94 NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKA 140
Score = 68.9 bits (167), Expect = 1e-11, Method: Composition-based stats.
Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 1/123 (0%)
Query: 99 LYMAAQENHDGVVRYLLSKGGNQ-TLATEHNITPLHVACKWGKVAMVELLISKGANIEAK 157
++ +E + VR L N +H +PLH AC+ G+ A+VE+LI +GA I
Sbjct: 4 IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM 63
Query: 158 TRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHG 217
R TPLH AA GH +++ L++ A + + ++G PLH A + L+ +G
Sbjct: 64 NRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANG 123
Query: 218 AGV 220
A V
Sbjct: 124 ALV 126
Score = 66.6 bits (161), Expect = 5e-11, Method: Composition-based stats.
Identities = 45/129 (34%), Positives = 62/129 (48%)
Query: 279 NHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPL 338
N V V L + + D N +GF+PLH AC++ R VVE+L+ GA I TPL
Sbjct: 12 NAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPL 71
Query: 339 HVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAR 398
H+A+ G +I LLQ A + G PLH A Q + L+ NGA V +
Sbjct: 72 HLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNK 131
Query: 399 EDQTPLHVA 407
+ P+ A
Sbjct: 132 YGEMPVDKA 140
Score = 65.9 bits (159), Expect = 8e-11, Method: Composition-based stats.
Identities = 39/121 (32%), Positives = 60/121 (49%)
Query: 668 NAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITM 727
N GF+PLH + +EG + + +LI GA ++ + TPLHL A ++ +
Sbjct: 28 NQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLL 87
Query: 728 FNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVL 787
A+I+ V + G PLH A +GQ + LV NGA V+ G P+ +A R L
Sbjct: 88 QYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLREL 147
Query: 788 I 788
+
Sbjct: 148 L 148
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 41/124 (33%), Positives = 57/124 (45%), Gaps = 17/124 (13%)
Query: 525 GFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAK 584
GF+PLH A + GR + +ML+ + GA I + TPLHLAA
Sbjct: 34 GFSPLHWACREGRSAVVEMLIMR-----------------GARINVMNRGDDTPLHLAAS 76
Query: 585 YGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTP 644
+G I Q LLQ A +++ ++G PLH A + VA L+ GA K G P
Sbjct: 77 HGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMP 136
Query: 645 LHIA 648
+ A
Sbjct: 137 VDKA 140
Score = 62.8 bits (151), Expect = 7e-10, Method: Composition-based stats.
Identities = 34/104 (32%), Positives = 57/104 (54%)
Query: 575 GFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASP 634
GF+PLH A + GR + +ML+ + A ++ + TPLH+A+ + H+++ LL A
Sbjct: 34 GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI 93
Query: 635 HAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPL 678
+AV ++G PLH A Q +A L+ A + +K G P+
Sbjct: 94 NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPV 137
Score = 62.8 bits (151), Expect = 7e-10, Method: Composition-based stats.
Identities = 45/133 (33%), Positives = 62/133 (46%), Gaps = 9/133 (6%)
Query: 252 DPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKK 311
D N +GF+PLH AC++ R V + L+ R A N TPLH+A
Sbjct: 26 DLNQGDDHGFSPLHWACREGRSA--------VVEMLIMRGARINVMNRGDDTPLHLAASH 77
Query: 312 NRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPL 371
+V+ LL+Y A I A E G PLH A F G +A L+ GA GE P+
Sbjct: 78 GHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPV 137
Query: 372 HLAARANQTDIVR 384
A+A +++R
Sbjct: 138 D-KAKAPLRELLR 149
Score = 62.4 bits (150), Expect = 9e-10, Method: Composition-based stats.
Identities = 39/110 (35%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
Query: 603 SQGKN-GVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLL 661
+QG + G +PLH A V +L+ RGA + + + TPLH+AA DI LL
Sbjct: 28 NQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLL 87
Query: 662 EYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPL 711
+Y A NA ++ G PLH + G ++ L+ +GA VS K G P+
Sbjct: 88 QYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPV 137
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 49/93 (52%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
G+ V ++L+ GA INV + TPL++AA H +V+ LL + EH PL
Sbjct: 45 GRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPL 104
Query: 133 HVACKWGKVAMVELLISKGANIEAKTRDGLTPL 165
H AC WG+ + E L++ GA + + G P+
Sbjct: 105 HYACFWGQDQVAEDLVANGALVSICNKYGEMPV 137
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 1/130 (0%)
Query: 73 GQEEVAKILVDNGAT-INVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITP 131
G ++ +DN +N +GF+PL+ A +E VV L+ +G + + TP
Sbjct: 11 GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTP 70
Query: 132 LHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKT 191
LH+A G +V+ L+ A+I A G PLH A G D V + L+ GA +
Sbjct: 71 LHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICN 130
Query: 192 KNGLAPLHMA 201
K G P+ A
Sbjct: 131 KYGEMPVDKA 140
Score = 60.1 bits (144), Expect = 5e-09, Method: Composition-based stats.
Identities = 40/124 (32%), Positives = 56/124 (45%), Gaps = 17/124 (13%)
Query: 492 GYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPV 551
G++ LH + +EG+ V +L GA I + TPLHLAA +G I Q LLQ
Sbjct: 34 GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK--- 90
Query: 552 DSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTP 611
A I A + G PLH A +G+ ++A+ L+ A V K G P
Sbjct: 91 --------------ADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMP 136
Query: 612 LHVA 615
+ A
Sbjct: 137 VDKA 140
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 56/108 (51%)
Query: 640 NGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGAT 699
+G++PLH A ++ + + L+ A+ N ++ TPLHL+A GH D+ L+++ A
Sbjct: 33 HGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKAD 92
Query: 700 VSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIA 747
++ ++G PLH + VA + NGA + K G P+ A
Sbjct: 93 INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKA 140
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 51/92 (55%)
Query: 706 NGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGAN 765
+G +PLH +E + V + + GA I+ + + TPLH+A+ G ++V+ L++ A+
Sbjct: 33 HGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKAD 92
Query: 766 VNATTNLGYTPLHQASQQGRVLIIDLLLGAGA 797
+NA G PLH A G+ + + L+ GA
Sbjct: 93 INAVNEHGNVPLHYACFWGQDQVAEDLVANGA 124
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 3/112 (2%)
Query: 442 VRILLRNGASVDARAREDQ--TPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHIS 499
VR+ L N + D +D +PLH A R G + +L+ GA ++ + T LH++
Sbjct: 16 VRLWLDNTEN-DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLA 74
Query: 500 AKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPV 551
A G ++ L + A I A + G PLH A +G+ ++A+ L+ A V
Sbjct: 75 ASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV 126
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 38/126 (30%), Positives = 53/126 (42%), Gaps = 26/126 (20%)
Query: 367 GETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRG 426
G +PLH A R ++ +V +L+ GA ++ R D TP
Sbjct: 34 GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTP----------------------- 70
Query: 427 ETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVD 486
LHLAA DIV+ LL+ A ++A PLH A G +A L+ +GA V
Sbjct: 71 ---LHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVS 127
Query: 487 APTKDG 492
K G
Sbjct: 128 ICNKYG 133
Score = 53.1 bits (126), Expect = 7e-07, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 41/76 (53%)
Query: 193 NGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKAD 252
+G +PLH A + A +LI GA ++ + T LH+A+ GH + + LL KAD
Sbjct: 33 HGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKAD 92
Query: 253 PNARALNGFTPLHIAC 268
NA +G PLH AC
Sbjct: 93 INAVNEHGNVPLHYAC 108
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 31/62 (50%)
Query: 740 GFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP 799
GF+PLH A G+ +V L+ GA +N TPLH A+ G I+ LL A
Sbjct: 34 GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI 93
Query: 800 NA 801
NA
Sbjct: 94 NA 95
Score = 34.3 bits (77), Expect = 0.27, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 751 GQLNMVRYLVENGAN-VNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 800
G VR ++N N +N + G++PLH A ++GR ++++L+ GA+ N
Sbjct: 11 GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN 61
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 56/82 (68%)
Query: 433 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDG 492
AARA Q D VRIL+ NGA V+A+ ++ TPLH+A+R G+ +I +LL+ GA V+A K G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 493 YTALHISAKEGQDEVASILTES 514
TA IS G +++A IL ++
Sbjct: 69 KTAFDISIDNGNEDLAEILQKA 90
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%)
Query: 466 ASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKG 525
A+R G D +L+ +GA V+A KDGYT LH++A+EG E+ +L ++GA + A K G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 526 FTPLHLAAKYGRMKIAQML 544
T ++ G +A++L
Sbjct: 69 KTAFDISIDNGNEDLAEIL 87
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 54/105 (51%), Gaps = 26/105 (24%)
Query: 374 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLA 433
AARA Q D VRIL+ NGA V+A+ ++ G TPLHLA
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKD--------------------------GYTPLHLA 42
Query: 434 ARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLL 478
AR +IV +LL+ GA V+A+ + +T ++ GN D+A +L
Sbjct: 43 AREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 87
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 747 ASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNLF 806
A+ GQ + VR L+ NGA+VNA GYTPLH A+++G + I+++LL AGA NA
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 807 CCA-TILVKNGAE 818
A I + NG E
Sbjct: 69 KTAFDISIDNGNE 81
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 17/96 (17%)
Query: 499 SAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVA 558
+A+ GQD+ IL +GA + A K G+TPLHLAA+ G ++I ++LL+
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK------------ 56
Query: 559 SILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 594
+GA + A K G T ++ G +A++L
Sbjct: 57 -----AGADVNAQDKFGKTAFDISIDNGNEDLAEIL 87
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%)
Query: 626 LLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEG 685
+L+ GA +A K+GYTPLH+AA++ ++I LL+ A NA+ K G T +S G
Sbjct: 20 ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNG 79
Query: 686 HTDMSSLL 693
+ D++ +L
Sbjct: 80 NEDLAEIL 87
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 135 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNG 194
A + G+ V +L++ GA++ AK +DG TPLH AAR GH ++++L++ GA + ++ K G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 195 LAPLHMASQGDHEAATRVL 213
++ +E +L
Sbjct: 69 KTAFDISIDNGNEDLAEIL 87
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 553 SQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPL 612
Q IL +GA + A K G+TPLHLAA+ G ++I ++LL+ A V++Q K G T
Sbjct: 13 GQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAF 72
Query: 613 HVASHYDHQNVALLL 627
++ ++++A +L
Sbjct: 73 DISIDNGNEDLAEIL 87
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%)
Query: 648 AAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNG 707
AA+ Q D L+ A NA+ K G+TPLHL+A+EGH ++ +L++ GA V+ Q K G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 708 LTPLHLCAQEDKVNVATI 725
T + ++A I
Sbjct: 69 KTAFDISIDNGNEDLAEI 86
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 714 CAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 773
Q+D+V I M NGA+++ K G+TPLH+A+ G L +V L++ GA+VNA G
Sbjct: 12 AGQDDEV---RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 774 YTPLHQASQQGRVLIIDLL 792
T + G + ++L
Sbjct: 69 KTAFDISIDNGNEDLAEIL 87
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
GQ++ +IL+ NGA +N + +G+TPL++AA+E H +V LL G + + T
Sbjct: 13 GQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAF 72
Query: 133 HVACKWGKVAMVELL 147
++ G + E+L
Sbjct: 73 DISIDNGNEDLAEIL 87
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 47/82 (57%)
Query: 99 LYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKT 158
L AA+ D VR L++ G + + TPLH+A + G + +VE+L+ GA++ A+
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 65
Query: 159 RDGLTPLHCAARSGHDNVIDIL 180
+ G T + +G++++ +IL
Sbjct: 66 KFGKTAFDISIDNGNEDLAEIL 87
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 43/72 (59%)
Query: 285 KTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFM 344
+ L+ AD NA+ +G+TPLH+A ++ ++VE+LLK GA + A + G T ++
Sbjct: 19 RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDN 78
Query: 345 GCMNIAIFLLQA 356
G ++A L +A
Sbjct: 79 GNEDLAEILQKA 90
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%)
Query: 681 SAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAG 740
+A+ G D +L+ +GA V+ + K+G TPLHL A+E + + + + GA+++ K G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 741 FTPLHIASHFGQLNMVRYL 759
T I+ G ++ L
Sbjct: 69 KTAFDISIDNGNEDLAEIL 87
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%)
Query: 168 AARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDY 227
AAR+G D+ + IL+ GA + +K K+G PLH+A++ H VL+ GA V+
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 228 LTALHVASHCGHVRVAKTL 246
TA ++ G+ +A+ L
Sbjct: 69 KTAFDISIDNGNEDLAEIL 87
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%)
Query: 582 AAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNG 641
AA+ G+ ++L+ A V+++ K+G TPLH+A+ H + +LL GA +A K G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 642 YTPLHIAAKKNQMDIATTL 660
T I+ D+A L
Sbjct: 69 KTAFDISIDNGNEDLAEIL 87
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%)
Query: 308 ACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRG 367
A + + V +L+ GA + A + G TPLH+A+ G + I LL+AGA + G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 368 ETPLHLAARANQTDIVRILLR 388
+T ++ D+ IL +
Sbjct: 69 KTAFDISIDNGNEDLAEILQK 89
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 234 ASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKAD 293
A+ G + L+ AD NA+ +G+TPLH+A ++ H+ + + LL AD
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAARE--------GHLEIVEVLLKAGAD 60
Query: 294 PNARALNGFTPLHIACKKNRYKVVELLLK 322
NA+ G T I+ + E+L K
Sbjct: 61 VNAQDKFGKTAFDISIDNGNEDLAEILQK 89
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 352 FLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVA 407
L+ GA + G TPLHLAAR +IV +LL+ GA V+A+ + +T ++
Sbjct: 20 ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDIS 75
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 201 ASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNG 260
A++ + R+L+ +GA V+ D T LH+A+ GH+ + + LL AD NA+ G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 261 FTPLHIAC 268
T I+
Sbjct: 69 KTAFDISI 76
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 52/79 (65%)
Query: 433 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDG 492
AARA Q D VRIL+ NGA V A+ + TPLH+A+R G+ ++ LLL+ GA V+A K G
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Query: 493 YTALHISAKEGQDEVASIL 511
TA IS G +++A IL
Sbjct: 73 KTAFDISIDNGNEDLAEIL 91
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 52/105 (49%), Gaps = 26/105 (24%)
Query: 374 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLA 433
AARA Q D VRIL+ NGA V A+ + G TPLHLA
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDK--------------------------NGSTPLHLA 46
Query: 434 ARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLL 478
AR ++V++LL GA V+A+ + +T ++ GN D+A +L
Sbjct: 47 ARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 17/96 (17%)
Query: 499 SAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVA 558
+A+ GQD+ IL +GA + A K G TPLHLAA+ G +++ ++LL
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLL------------- 59
Query: 559 SILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 594
E+GA + A K G T ++ G +A++L
Sbjct: 60 ----EAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%)
Query: 466 ASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKG 525
A+R G D +L+ +GA V A K+G T LH++A+ G EV +L E+GA + A K G
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Query: 526 FTPLHLAAKYGRMKIAQML 544
T ++ G +A++L
Sbjct: 73 KTAFDISIDNGNEDLAEIL 91
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 135 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNG 194
A + G+ V +L++ GA++ AK ++G TPLH AAR+GH V+ +L+E GA + ++ K G
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Query: 195 LAPLHMASQGDHEAATRVL 213
++ +E +L
Sbjct: 73 KTAFDISIDNGNEDLAEIL 91
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%)
Query: 626 LLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEG 685
+L+ GA A KNG TPLH+AA+ +++ LLE A NA+ K G T +S G
Sbjct: 24 ILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNG 83
Query: 686 HTDMSSLL 693
+ D++ +L
Sbjct: 84 NEDLAEIL 91
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 43/68 (63%)
Query: 560 ILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYD 619
IL +GA + A K G TPLHLAA+ G +++ ++LL+ A V++Q K G T ++
Sbjct: 24 ILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNG 83
Query: 620 HQNVALLL 627
++++A +L
Sbjct: 84 NEDLAEIL 91
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 714 CAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 773
Q+D+V I M NGA++ K G TPLH+A+ G L +V+ L+E GA+VNA G
Sbjct: 16 AGQDDEV---RILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Query: 774 YTPLHQASQQGRVLIIDLL 792
T + G + ++L
Sbjct: 73 KTAFDISIDNGNEDLAEIL 91
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 747 ASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNLF 806
A+ GQ + VR L+ NGA+V A G TPLH A++ G + ++ LLL AGA NA
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Query: 807 CCA-TILVKNGAE 818
A I + NG E
Sbjct: 73 KTAFDISIDNGNE 85
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 48/82 (58%)
Query: 99 LYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKT 158
L AA+ D VR L++ G + ++ TPLH+A + G + +V+LL+ GA++ A+
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQD 69
Query: 159 RDGLTPLHCAARSGHDNVIDIL 180
+ G T + +G++++ +IL
Sbjct: 70 KFGKTAFDISIDNGNEDLAEIL 91
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 41/78 (52%)
Query: 648 AAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNG 707
AA+ Q D L+ A A+ K G TPLHL+A+ GH ++ LL+E GA V+ Q K G
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Query: 708 LTPLHLCAQEDKVNVATI 725
T + ++A I
Sbjct: 73 KTAFDISIDNGNEDLAEI 90
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%)
Query: 582 AAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNG 641
AA+ G+ ++L+ A V ++ KNG TPLH+A+ H V LLL+ GA +A K G
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Query: 642 YTPLHIAAKKNQMDIATTL 660
T I+ D+A L
Sbjct: 73 KTAFDISIDNGNEDLAEIL 91
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 45/79 (56%)
Query: 168 AARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDY 227
AAR+G D+ + IL+ GA + +K KNG PLH+A++ H ++L+ GA V+
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Query: 228 LTALHVASHCGHVRVAKTL 246
TA ++ G+ +A+ L
Sbjct: 73 KTAFDISIDNGNEDLAEIL 91
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
GQ++ +IL+ NGA + + NG TPL++AA+ H VV+ LL G + + T
Sbjct: 17 GQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAF 76
Query: 133 HVACKWGKVAMVELL 147
++ G + E+L
Sbjct: 77 DISIDNGNEDLAEIL 91
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%)
Query: 681 SAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAG 740
+A+ G D +L+ +GA V+ + KNG TPLHL A+ + V + + GA+++ K G
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Query: 741 FTPLHIASHFGQLNMVRYL 759
T I+ G ++ L
Sbjct: 73 KTAFDISIDNGNEDLAEIL 91
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%)
Query: 308 ACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRG 367
A + + V +L+ GA +AA ++G TPLH+A+ G + + LL+AGA + G
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Query: 368 ETPLHLAARANQTDIVRIL 386
+T ++ D+ IL
Sbjct: 73 KTAFDISIDNGNEDLAEIL 91
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%)
Query: 285 KTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFM 344
+ L+ AD A+ NG TPLH+A + +VV+LLL+ GA + A + G T ++
Sbjct: 23 RILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDN 82
Query: 345 GCMNIAIFL 353
G ++A L
Sbjct: 83 GNEDLAEIL 91
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 234 ASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKAD 293
A+ G + L+ AD A+ NG TPLH+A + H+ V K LL+ AD
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARN--------GHLEVVKLLLEAGAD 64
Query: 294 PNARALNGFTPLHIACKKNRYKVVELL 320
NA+ G T I+ + E+L
Sbjct: 65 VNAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 352 FLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVA 407
L+ GA G TPLHLAAR ++V++LL GA V+A+ + +T ++
Sbjct: 24 ILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDIS 79
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 59/110 (53%), Gaps = 1/110 (0%)
Query: 623 VALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSA 682
+A LL RGA+P + G+ +H AA+ Q+D TLLE+ A N E G PLHL+A
Sbjct: 52 IARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAA 111
Query: 683 QEGHTDMSSLLIEHGAT-VSHQAKNGLTPLHLCAQEDKVNVATITMFNGA 731
+EGH + L++H A+ V H+ G T L + V ++ NGA
Sbjct: 112 KEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 65/135 (48%), Gaps = 17/135 (12%)
Query: 460 QTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASIT 519
+T L V +LGN +IA LL GA+ D + G+ +H +A+ GQ + L E A +
Sbjct: 39 RTALQVM-KLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVN 97
Query: 520 ATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPL 579
+G PLHLAAK G +++ + L++ A +++ KG T
Sbjct: 98 IEDNEGNLPLHLAAKEGHLRVVEFLVKHTA----------------SNVGHRNHKGDTAC 141
Query: 580 HLAAKYGRMKIAQML 594
LA YGR ++ ++
Sbjct: 142 DLARLYGRNEVVSLM 156
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 722 VATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQAS 781
+A + GA D + GF +H A+ GQL+ ++ L+E A+VN N G PLH A+
Sbjct: 52 IARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAA 111
Query: 782 QQGRVLIIDLLL 793
++G + +++ L+
Sbjct: 112 KEGHLRVVEFLV 123
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
Query: 283 VAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVAS 342
+A+ LL R A+P+ + GF +H A + + ++ LL++ A + G PLH+A+
Sbjct: 52 IARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAA 111
Query: 343 FMGCMNIAIFLLQAGAAP-DTATVRGETPLHLAARANQTDIVRILLRNGAS 392
G + + FL++ A+ +G+T LA + ++V ++ NGA
Sbjct: 112 KEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 426 GETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGAS- 484
G +H AARA Q D ++ LL A V+ E PLH+A++ G+ + L++H AS
Sbjct: 70 GFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129
Query: 485 VDAPTKDGYTALHISAKEGQDEVASILTESGAS 517
V G TA ++ G++EV S++ +GA
Sbjct: 130 VGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 58/126 (46%), Gaps = 9/126 (7%)
Query: 334 GLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASV 393
G T L V +G IA LL GA PD G +H AARA Q D ++ LL A V
Sbjct: 38 GRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADV 96
Query: 394 DARAREDQTPLHVAS-----RLRRF---SSASQSALTRVRGETPLHLAARANQTDIVRIL 445
+ E PLH+A+ R+ F +AS +G+T LA + ++V ++
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Query: 446 LRNGAS 451
NGA
Sbjct: 157 QANGAG 162
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 130 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 189
T L V K G + L+ +GAN + K R G +H AAR+G + + L+E A +
Sbjct: 40 TALQV-MKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNI 98
Query: 190 KTKNGLAPLHMASQGDHEAATRVLIYHGA 218
+ G PLH+A++ H L+ H A
Sbjct: 99 EDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%)
Query: 110 VVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAA 169
+ R LL +G N L +H A + G++ ++ L+ A++ + +G PLH AA
Sbjct: 52 IARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAA 111
Query: 170 RSGHDNVIDILIEKGAA 186
+ GH V++ L++ A+
Sbjct: 112 KEGHLRVVEFLVKHTAS 128
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%)
Query: 556 KVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVA 615
++A L GA+ + GF +H AA+ G++ Q LL+ A V+ + G PLH+A
Sbjct: 51 EIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLA 110
Query: 616 SHYDHQNVALLLLDRGAS 633
+ H V L+ AS
Sbjct: 111 AKEGHLRVVEFLVKHTAS 128
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 78/159 (49%), Gaps = 4/159 (2%)
Query: 648 AAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNG 707
AA + ++ T+LL+ N NA++ G T L + + G+ +++ L+ GA + + G
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV-MKLGNPEIARRLLLRGANPDLKDRTG 70
Query: 708 LTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGA-NV 766
+H A+ +++ + A+++ G PLH+A+ G L +V +LV++ A NV
Sbjct: 71 FAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV 130
Query: 767 NATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNL 805
+ G T A GR ++ L+ GA TNL
Sbjct: 131 GHRNHKGDTACDLARLYGRNEVVSLMQANGA--GGATNL 167
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 10/136 (7%)
Query: 194 GLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADP 253
G L + G+ E A R+L+ GA D +H A+ G + +TLL+ +AD
Sbjct: 38 GRTALQVMKLGNPEIARRLLL-RGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADV 96
Query: 254 NARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKA-DPNARALNGFTPLHIACKKN 312
N G PLH+A K+ H+ V + L+ A + R G T +A
Sbjct: 97 NIEDNEGNLPLHLAAKE--------GHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYG 148
Query: 313 RYKVVELLLKYGASIA 328
R +VV L+ GA A
Sbjct: 149 RNEVVSLMQANGAGGA 164
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Query: 301 GFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAP 360
G T L + K ++ LL GA+ +G +H A+ G ++ LL+ A
Sbjct: 38 GRTALQV-MKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADV 96
Query: 361 DTATVRGETPLHLAARANQTDIVRILLRNGAS 392
+ G PLHLAA+ +V L+++ AS
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 78/165 (47%), Gaps = 21/165 (12%)
Query: 336 TPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDA 395
TPLH+A IA LL AG P+ RG TPLHLA ASV
Sbjct: 44 TPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCL----------ASVGV 93
Query: 396 RAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDAR 455
+ TP H+ S L+ T G T LHLA+ IV +L+ GA V+A+
Sbjct: 94 LTQSCTTP-HLHSILKA---------TNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ 143
Query: 456 ARED-QTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHIS 499
+ +T LH+A L N D+ SLLL+ GA V+ T GY+ ++
Sbjct: 144 EPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLT 188
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 96/200 (48%), Gaps = 31/200 (15%)
Query: 426 GETPLHLA----ARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQH 481
G++ LHLA +A +++R + + A ++ + QTPLH+A +IA LL
Sbjct: 5 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALL-- 62
Query: 482 GASVDAPTKD--GYTALHISAKEGQDEVASILTESGAS------ITATTKKGFTPLHLAA 533
GA D +D G T LH++ ++G +LT+S + + AT G T LHLA+
Sbjct: 63 GAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLAS 122
Query: 534 KYGRMKIAQMLLQKDAPVDSQ----GKVA-------------SILTESGASITATTKKGF 576
+G + I ++L+ A V++Q G+ A S+L + GA + T +G+
Sbjct: 123 IHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGY 182
Query: 577 TPLHLAAKYGRMKIAQMLLQ 596
+P L +I Q L Q
Sbjct: 183 SPYQLTWGRPSTRIQQQLGQ 202
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 88/186 (47%), Gaps = 11/186 (5%)
Query: 572 TKKGFTPLHLA----AKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLL 627
T+ G + LHLA K M++ + + A ++ Q TPLH+A + +A L
Sbjct: 2 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 61
Query: 628 LDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPN------AESKAGFTPLHLS 681
L G P G TPLH+A ++ + L + P+ A + G T LHL+
Sbjct: 62 LGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLA 121
Query: 682 AQEGHTDMSSLLIEHGATVSHQAK-NGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAG 740
+ G+ + LL+ GA V+ Q NG T LHL ++ ++ + GA+++ VT G
Sbjct: 122 SIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQG 181
Query: 741 FTPLHI 746
++P +
Sbjct: 182 YSPYQL 187
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 67/141 (47%), Gaps = 7/141 (4%)
Query: 643 TPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGAT--- 699
TPLH+A NQ +IA LL P G TPLHL+ ++G +L + T
Sbjct: 44 TPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHL 103
Query: 700 ---VSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKA-GFTPLHIASHFGQLNM 755
+ NG T LHL + + + + + GA+++ G T LH+A ++
Sbjct: 104 HSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL 163
Query: 756 VRYLVENGANVNATTNLGYTP 776
V L++ GA+VN T GY+P
Sbjct: 164 VSLLLKCGADVNRVTYQGYSP 184
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 88/195 (45%), Gaps = 21/195 (10%)
Query: 191 TKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYL-----TALHVASHCGHVRVAKT 245
T++G + LH+A + +A T +I G D +++ T LH+A +A+
Sbjct: 2 TEDGDSFLHLAIIHEEKALTMEVIRQVKG-DLAFLNFQNNLQQTPLHLAVITNQPEIAEA 60
Query: 246 LLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARAL------ 299
LL DP R G TPLH+AC++ S L P+ ++
Sbjct: 61 LLGAGCDPELRDFRGNTPLHLACEQGCLAS--------VGVLTQSCTTPHLHSILKATNY 112
Query: 300 NGFTPLHIACKKNRYKVVELLLKYGASIAATTE-SGLTPLHVASFMGCMNIAIFLLQAGA 358
NG T LH+A +VELL+ GA + A +G T LH+A + ++ LL+ GA
Sbjct: 113 NGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA 172
Query: 359 APDTATVRGETPLHL 373
+ T +G +P L
Sbjct: 173 DVNRVTYQGYSPYQL 187
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 69/166 (41%), Gaps = 31/166 (18%)
Query: 303 TPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDT 362
TPLH+A N+ ++ E LL G G TPLH+A GC+ L Q+ P
Sbjct: 44 TPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHL 103
Query: 363 ATV------RGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSA 416
++ G T LHLA+ IV +L+ GA V+A Q P
Sbjct: 104 HSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNA-----QEP------------- 145
Query: 417 SQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTP 462
G T LHLA D+V +LL+ GA V+ + +P
Sbjct: 146 -------CNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 184
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 7/156 (4%)
Query: 76 EVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVA 135
EV + + + A +N Q+ TPL++A N + LL G + L TPLH+A
Sbjct: 23 EVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLA 82
Query: 136 CKWGKVAMVELLISKGAN------IEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 189
C+ G +A V +L ++A +G T LH A+ G+ ++++L+ GA + +
Sbjct: 83 CEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNA 142
Query: 190 KTK-NGLAPLHMASQGDHEAATRVLIYHGAGVDEIT 224
+ NG LH+A + +L+ GA V+ +T
Sbjct: 143 QEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVT 178
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 87/204 (42%), Gaps = 28/204 (13%)
Query: 489 TKDGYTALHISAKEGQD----EVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
T+DG + LH++ + EV + A + TPLHLA
Sbjct: 2 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAV----------- 50
Query: 545 LQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQK------D 598
+ +Q ++A L +G +G TPLHLA + G + +L Q
Sbjct: 51 ------ITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLH 104
Query: 599 APVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAK-NGYTPLHIAAKKNQMDIA 657
+ + + NG T LH+AS + + + LL+ GA +A NG T LH+A D+
Sbjct: 105 SILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLV 164
Query: 658 TTLLEYNAKPNAESKAGFTPLHLS 681
+ LL+ A N + G++P L+
Sbjct: 165 SLLLKCGADVNRVTYQGYSPYQLT 188
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 7/136 (5%)
Query: 72 TGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTL-----ATE 126
T Q E+A+ L+ G ++ G TPL++A ++ V L L AT
Sbjct: 52 TNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATN 111
Query: 127 HN-ITPLHVACKWGKVAMVELLISKGANIEAKTR-DGLTPLHCAARSGHDNVIDILIEKG 184
+N T LH+A G + +VELL+S GA++ A+ +G T LH A + +++ +L++ G
Sbjct: 112 YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG 171
Query: 185 AALYSKTKNGLAPLHM 200
A + T G +P +
Sbjct: 172 ADVNRVTYQGYSPYQL 187
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 78/165 (47%), Gaps = 21/165 (12%)
Query: 336 TPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDA 395
TPLH+A IA LL AG P+ RG TPLHLA ASV
Sbjct: 47 TPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCL----------ASVGV 96
Query: 396 RAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDAR 455
+ TP H+ S L+ T G T LHLA+ IV +L+ GA V+A+
Sbjct: 97 LTQSCTTP-HLHSILKA---------TNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ 146
Query: 456 ARED-QTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHIS 499
+ +T LH+A L N D+ SLLL+ GA V+ T GY+ ++
Sbjct: 147 EPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLT 191
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 96/200 (48%), Gaps = 31/200 (15%)
Query: 426 GETPLHLA----ARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQH 481
G++ LHLA +A +++R + + A ++ + QTPLH+A +IA LL
Sbjct: 8 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALL-- 65
Query: 482 GASVDAPTKD--GYTALHISAKEGQDEVASILTESGAS------ITATTKKGFTPLHLAA 533
GA D +D G T LH++ ++G +LT+S + + AT G T LHLA+
Sbjct: 66 GAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLAS 125
Query: 534 KYGRMKIAQMLLQKDAPVDSQ----GKVA-------------SILTESGASITATTKKGF 576
+G + I ++L+ A V++Q G+ A S+L + GA + T +G+
Sbjct: 126 IHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGY 185
Query: 577 TPLHLAAKYGRMKIAQMLLQ 596
+P L +I Q L Q
Sbjct: 186 SPYQLTWGRPSTRIQQQLGQ 205
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 92/204 (45%), Gaps = 20/204 (9%)
Query: 572 TKKGFTPLHLA----AKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLL 627
T+ G + LHLA K M++ + + A ++ Q TPLH+A + +A L
Sbjct: 5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 64
Query: 628 LDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPN------AESKAGFTPLHLS 681
L G P G TPLH+A ++ + L + P+ A + G T LHL+
Sbjct: 65 LGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLA 124
Query: 682 AQEGHTDMSSLLIEHGATVSHQAK-NGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAG 740
+ G+ + LL+ GA V+ Q NG T LHL ++ ++ + GA+++ VT G
Sbjct: 125 SIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQG 184
Query: 741 FTPLH---------IASHFGQLNM 755
++P I GQL +
Sbjct: 185 YSPYQLTWGRPSTRIQQQLGQLTL 208
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 88/195 (45%), Gaps = 21/195 (10%)
Query: 191 TKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYL-----TALHVASHCGHVRVAKT 245
T++G + LH+A + +A T +I G D +++ T LH+A +A+
Sbjct: 5 TEDGDSFLHLAIIHEEKALTMEVIRQVKG-DLAFLNFQNNLQQTPLHLAVITNQPEIAEA 63
Query: 246 LLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARAL------ 299
LL DP R G TPLH+AC++ S L P+ ++
Sbjct: 64 LLGAGCDPELRDFRGNTPLHLACEQGCLAS--------VGVLTQSCTTPHLHSILKATNY 115
Query: 300 NGFTPLHIACKKNRYKVVELLLKYGASIAATTE-SGLTPLHVASFMGCMNIAIFLLQAGA 358
NG T LH+A +VELL+ GA + A +G T LH+A + ++ LL+ GA
Sbjct: 116 NGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA 175
Query: 359 APDTATVRGETPLHL 373
+ T +G +P L
Sbjct: 176 DVNRVTYQGYSPYQL 190
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 70/169 (41%), Gaps = 31/169 (18%)
Query: 303 TPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDT 362
TPLH+A N+ ++ E LL G G TPLH+A GC+ L Q+ P
Sbjct: 47 TPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHL 106
Query: 363 ATV------RGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSA 416
++ G T LHLA+ IV +L+ GA V+A Q P
Sbjct: 107 HSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNA-----QEP------------- 148
Query: 417 SQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHV 465
G T LHLA D+V +LL+ GA V+ + +P +
Sbjct: 149 -------CNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQL 190
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 67/141 (47%), Gaps = 7/141 (4%)
Query: 643 TPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGAT--- 699
TPLH+A NQ +IA LL P G TPLHL+ ++G +L + T
Sbjct: 47 TPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHL 106
Query: 700 ---VSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKA-GFTPLHIASHFGQLNM 755
+ NG T LHL + + + + + GA+++ G T LH+A ++
Sbjct: 107 HSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL 166
Query: 756 VRYLVENGANVNATTNLGYTP 776
V L++ GA+VN T GY+P
Sbjct: 167 VSLLLKCGADVNRVTYQGYSP 187
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 7/156 (4%)
Query: 76 EVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVA 135
EV + + + A +N Q+ TPL++A N + LL G + L TPLH+A
Sbjct: 26 EVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLA 85
Query: 136 CKWGKVAMVELLISKGAN------IEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 189
C+ G +A V +L ++A +G T LH A+ G+ ++++L+ GA + +
Sbjct: 86 CEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNA 145
Query: 190 KTK-NGLAPLHMASQGDHEAATRVLIYHGAGVDEIT 224
+ NG LH+A + +L+ GA V+ +T
Sbjct: 146 QEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVT 181
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 72/162 (44%), Gaps = 24/162 (14%)
Query: 527 TPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYG 586
TPLHLA + +Q ++A L +G +G TPLHLA + G
Sbjct: 47 TPLHLAV-----------------ITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQG 89
Query: 587 RMKIAQMLLQK------DAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAK- 639
+ +L Q + + + NG T LH+AS + + + LL+ GA +A
Sbjct: 90 CLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPC 149
Query: 640 NGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLS 681
NG T LH+A D+ + LL+ A N + G++P L+
Sbjct: 150 NGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLT 191
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 7/136 (5%)
Query: 72 TGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTL-----ATE 126
T Q E+A+ L+ G ++ G TPL++A ++ V L L AT
Sbjct: 55 TNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATN 114
Query: 127 HN-ITPLHVACKWGKVAMVELLISKGANIEAKTR-DGLTPLHCAARSGHDNVIDILIEKG 184
+N T LH+A G + +VELL+S GA++ A+ +G T LH A + +++ +L++ G
Sbjct: 115 YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG 174
Query: 185 AALYSKTKNGLAPLHM 200
A + T G +P +
Sbjct: 175 ADVNRVTYQGYSPYQL 190
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 51/79 (64%)
Query: 433 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDG 492
AARA Q D VRIL+ NGA V A+ + TPLH+A+R G+ ++ LLL+ GA V A K G
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 493 YTALHISAKEGQDEVASIL 511
TA IS G +++A IL
Sbjct: 91 KTAFDISIDNGNEDLAEIL 109
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 51/105 (48%), Gaps = 26/105 (24%)
Query: 374 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLA 433
AARA Q D VRIL+ NGA V A+ + G TPLHLA
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDK--------------------------NGSTPLHLA 64
Query: 434 ARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLL 478
AR ++V++LL GA V A+ + +T ++ GN D+A +L
Sbjct: 65 ARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 17/96 (17%)
Query: 499 SAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVA 558
+A+ GQD+ IL +GA + A K G TPLHLAA+ G +++ ++LL
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLL------------- 77
Query: 559 SILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 594
E+GA + A K G T ++ G +A++L
Sbjct: 78 ----EAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%)
Query: 466 ASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKG 525
A+R G D +L+ +GA V A K+G T LH++A+ G EV +L E+GA + A K G
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 526 FTPLHLAAKYGRMKIAQML 544
T ++ G +A++L
Sbjct: 91 KTAFDISIDNGNEDLAEIL 109
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 135 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNG 194
A + G+ V +L++ GA++ AK ++G TPLH AAR+GH V+ +L+E GA + ++ K G
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 195 LAPLHMASQGDHEAATRVL 213
++ +E +L
Sbjct: 91 KTAFDISIDNGNEDLAEIL 109
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 42/68 (61%)
Query: 560 ILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYD 619
IL +GA + A K G TPLHLAA+ G +++ ++LL+ A V +Q K G T ++
Sbjct: 42 ILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNG 101
Query: 620 HQNVALLL 627
++++A +L
Sbjct: 102 NEDLAEIL 109
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%)
Query: 626 LLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEG 685
+L+ GA A KNG TPLH+AA+ +++ LLE A A+ K G T +S G
Sbjct: 42 ILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNG 101
Query: 686 HTDMSSLL 693
+ D++ +L
Sbjct: 102 NEDLAEIL 109
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 714 CAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 773
Q+D+V I M NGA++ K G TPLH+A+ G L +V+ L+E GA+V A G
Sbjct: 34 AGQDDEVR---ILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 774 YTPLHQASQQGRVLIIDLL 792
T + G + ++L
Sbjct: 91 KTAFDISIDNGNEDLAEIL 109
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 48/82 (58%)
Query: 99 LYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKT 158
L AA+ D VR L++ G + ++ TPLH+A + G + +V+LL+ GA++ A+
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQD 87
Query: 159 RDGLTPLHCAARSGHDNVIDIL 180
+ G T + +G++++ +IL
Sbjct: 88 KFGKTAFDISIDNGNEDLAEIL 109
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 40/78 (51%)
Query: 648 AAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNG 707
AA+ Q D L+ A A+ K G TPLHL+A+ GH ++ LL+E GA V Q K G
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 708 LTPLHLCAQEDKVNVATI 725
T + ++A I
Sbjct: 91 KTAFDISIDNGNEDLAEI 108
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 747 ASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNLF 806
A+ GQ + VR L+ NGA+V A G TPLH A++ G + ++ LLL AGA A
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 807 CCA-TILVKNGAE 818
A I + NG E
Sbjct: 91 KTAFDISIDNGNE 103
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%)
Query: 582 AAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNG 641
AA+ G+ ++L+ A V ++ KNG TPLH+A+ H V LLL+ GA A K G
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 642 YTPLHIAAKKNQMDIATTL 660
T I+ D+A L
Sbjct: 91 KTAFDISIDNGNEDLAEIL 109
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
GQ++ +IL+ NGA + + NG TPL++AA+ H VV+ LL G + + T
Sbjct: 35 GQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAF 94
Query: 133 HVACKWGKVAMVELL 147
++ G + E+L
Sbjct: 95 DISIDNGNEDLAEIL 109
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%)
Query: 168 AARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDY 227
AAR+G D+ + IL+ GA + +K KNG PLH+A++ H ++L+ GA V
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 228 LTALHVASHCGHVRVAKTL 246
TA ++ G+ +A+ L
Sbjct: 91 KTAFDISIDNGNEDLAEIL 109
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%)
Query: 681 SAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAG 740
+A+ G D +L+ +GA V+ + KNG TPLHL A+ + V + + GA++ K G
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 741 FTPLHIASHFGQLNMVRYL 759
T I+ G ++ L
Sbjct: 91 KTAFDISIDNGNEDLAEIL 109
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%)
Query: 285 KTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFM 344
+ L+ AD A+ NG TPLH+A + +VV+LLL+ GA + A + G T ++
Sbjct: 41 RILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDN 100
Query: 345 GCMNIAIFL 353
G ++A L
Sbjct: 101 GNEDLAEIL 109
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%)
Query: 308 ACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRG 367
A + + V +L+ GA +AA ++G TPLH+A+ G + + LL+AGA G
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 368 ETPLHLAARANQTDIVRIL 386
+T ++ D+ IL
Sbjct: 91 KTAFDISIDNGNEDLAEIL 109
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 352 FLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVA 407
L+ GA G TPLHLAAR ++V++LL GA V A+ + +T ++
Sbjct: 42 ILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDIS 97
Score = 36.6 bits (83), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 8/87 (9%)
Query: 234 ASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKAD 293
A+ G + L+ AD A+ NG TPLH+A + H+ V K LL+ AD
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARN--------GHLEVVKLLLEAGAD 82
Query: 294 PNARALNGFTPLHIACKKNRYKVVELL 320
A+ G T I+ + E+L
Sbjct: 83 VXAQDKFGKTAFDISIDNGNEDLAEIL 109
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 68.9 bits (167), Expect = 1e-11, Method: Composition-based stats.
Identities = 66/231 (28%), Positives = 94/231 (40%), Gaps = 36/231 (15%)
Query: 304 PLHIACKKNRY-KVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQA------ 356
PLH AC +N + KV ELL + + + G PLH + I FLL
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 357 GAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSA 416
PD + G TP H+A ++V+ L D +Q
Sbjct: 65 DDYPDDS---GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQ--------------- 106
Query: 417 SQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIAS 476
G T LHLA ++ + L+ NGASV + + +Q PLH A+ +G+ +
Sbjct: 107 ---------GVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIE 157
Query: 477 LLLQHGAS-VDAPTKDGYTALHISAKEGQDEVASILTES-GASITATTKKG 525
LL G S V+ K G+T L + EG + A +L E GA KG
Sbjct: 158 LLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG 208
Score = 65.1 bits (157), Expect = 2e-10, Method: Composition-based stats.
Identities = 58/196 (29%), Positives = 82/196 (41%), Gaps = 15/196 (7%)
Query: 556 KVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQK-------DAPVDSQGKNG 608
KV +L + + + G PLH + + +I LL K D P DS G
Sbjct: 17 KVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDS----G 72
Query: 609 VTPLHVASHYDHQNVALLLLDRGASP--HAVAKNGYTPLHIAAKKNQMDIATTLLEYNAK 666
TP H+A + V L DR P + + G T LH+A K +++ L+E A
Sbjct: 73 WTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS 132
Query: 667 PNAESKAGFTPLHLSAQEGHTDMSSLLIEHG-ATVSHQAKNGLTPLHLCAQEDKVNVATI 725
+ K PLH +A G + LL G + V+ Q K G TPL E + A +
Sbjct: 133 VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVL 192
Query: 726 TMFN-GAEIDPVTKAG 740
+ GAE D V G
Sbjct: 193 LVEKYGAEYDLVDNKG 208
Score = 60.8 bits (146), Expect = 3e-09, Method: Composition-based stats.
Identities = 51/177 (28%), Positives = 75/177 (42%), Gaps = 21/177 (11%)
Query: 426 GETPLHLAARANQTDIVRILLRNGASVDARAREDQ---TPLHVASRLGNGDIASLLLQHG 482
G PLH + +I LL +V+ D TP H+A +GN ++ L
Sbjct: 36 GRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRP 95
Query: 483 ASVDAP--TKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKI 540
D T G T LH++ + EV+ L E+GAS+ K PLH AA G +K+
Sbjct: 96 LKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKL 155
Query: 541 AQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQK 597
++L GK A + K+G+TPL A G A +L++K
Sbjct: 156 IELLC-------GLGKSA---------VNWQDKQGWTPLFHALAEGHGDAAVLLVEK 196
Score = 59.7 bits (143), Expect = 6e-09, Method: Composition-based stats.
Identities = 44/162 (27%), Positives = 79/162 (48%), Gaps = 12/162 (7%)
Query: 644 PLHIAAKKNQMDIATTLLEYNAKPN---AESKAGFTPLHLSAQEGHTDMSSLLIEHGATV 700
PLH A +N+ LL ++KP+ + + G PLH S +++S L+ V
Sbjct: 5 PLHQACMENEFFKVQELL--HSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 701 S---HQAKNGLTPLHLCAQEDKVNVATITMFN---GAEIDPVTKAGFTPLHIASHFGQLN 754
+ + +G TP H+ + V ++++ +++ +T G T LH+A
Sbjct: 63 NLDDYPDDSGWTPFHIACSVGNLEVVK-SLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE 121
Query: 755 MVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAG 796
+ ++L+ENGA+V PLH+A+ G + +I+LL G G
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG 163
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 44/140 (31%), Positives = 68/140 (48%), Gaps = 12/140 (8%)
Query: 259 NGFTPLHIACKKNRYKSSHCNHVWVAKTLLDR--KADPNARALNGFTPLHIACKKNRYKV 316
+G+TP HIAC ++ V K+L DR K D N G T LH+A K ++V
Sbjct: 71 SGWTPFHIACS--------VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 122
Query: 317 VELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAG-AAPDTATVRGETPL-HLA 374
+ L++ GAS+ + PLH A+ +G + + L G +A + +G TPL H
Sbjct: 123 SQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 182
Query: 375 ARANQTDIVRILLRNGASVD 394
A + V ++ + GA D
Sbjct: 183 AEGHGDAAVLLVEKYGAEYD 202
Score = 51.2 bits (121), Expect = 3e-06, Method: Composition-based stats.
Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 3/126 (2%)
Query: 71 ATGQEEVAKILVDN--GATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHN 128
+ G EV K L D +N + G T L++A + V ++L+ G + + + N
Sbjct: 81 SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFN 140
Query: 129 ITPLHVACKWGKVAMVELLISKGAN-IEAKTRDGLTPLHCAARSGHDNVIDILIEKGAAL 187
PLH A G + ++ELL G + + + + G TPL A GH + +L+EK A
Sbjct: 141 QIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE 200
Query: 188 YSKTKN 193
Y N
Sbjct: 201 YDLVDN 206
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 5/114 (4%)
Query: 94 NGFTPLYMAAQENHDGVVRYLLSKGGNQTL---ATEHNITPLHVACKWGKVAMVELLISK 150
+G PL+ + + +LLSK N L + TP H+AC G + +V+ L +
Sbjct: 35 DGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDR 94
Query: 151 --GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMAS 202
++ T G+T LH A V LIE GA++ K K PLH A+
Sbjct: 95 PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAA 148
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 66/231 (28%), Positives = 94/231 (40%), Gaps = 36/231 (15%)
Query: 304 PLHIACKKNRY-KVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQA------ 356
PLH AC +N + KV ELL + + + G PLH + I FLL
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 357 GAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSA 416
PD + G TP H+A ++V+ L D +Q
Sbjct: 65 DDYPDDS---GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQ--------------- 106
Query: 417 SQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIAS 476
G T LHLA ++ + L+ NGASV + + +Q PLH A+ +G+ +
Sbjct: 107 ---------GVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIE 157
Query: 477 LLLQHGAS-VDAPTKDGYTALHISAKEGQDEVASILTES-GASITATTKKG 525
LL G S V+ K G+T L + EG + A +L E GA KG
Sbjct: 158 LLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG 208
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 58/196 (29%), Positives = 82/196 (41%), Gaps = 15/196 (7%)
Query: 556 KVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQK-------DAPVDSQGKNG 608
KV +L + + + G PLH + + +I LL K D P DS G
Sbjct: 17 KVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDS----G 72
Query: 609 VTPLHVASHYDHQNVALLLLDRGASP--HAVAKNGYTPLHIAAKKNQMDIATTLLEYNAK 666
TP H+A + V L DR P + + G T LH+A K +++ L+E A
Sbjct: 73 WTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS 132
Query: 667 PNAESKAGFTPLHLSAQEGHTDMSSLLIEHG-ATVSHQAKNGLTPLHLCAQEDKVNVATI 725
+ K PLH +A G + LL G + V+ Q K G TPL E + A +
Sbjct: 133 VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVL 192
Query: 726 TMFN-GAEIDPVTKAG 740
+ GAE D V G
Sbjct: 193 LVEKYGAEYDLVDNKG 208
Score = 60.5 bits (145), Expect = 4e-09, Method: Composition-based stats.
Identities = 51/177 (28%), Positives = 75/177 (42%), Gaps = 21/177 (11%)
Query: 426 GETPLHLAARANQTDIVRILLRNGASVDARAREDQ---TPLHVASRLGNGDIASLLLQHG 482
G PLH + +I LL +V+ D TP H+A +GN ++ L
Sbjct: 36 GRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRP 95
Query: 483 ASVDAP--TKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKI 540
D T G T LH++ + EV+ L E+GAS+ K PLH AA G +K+
Sbjct: 96 LKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKL 155
Query: 541 AQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQK 597
++L GK A + K+G+TPL A G A +L++K
Sbjct: 156 IELLC-------GLGKSA---------VNWQDKQGWTPLFHALAEGHGDAAVLLVEK 196
Score = 59.7 bits (143), Expect = 6e-09, Method: Composition-based stats.
Identities = 44/162 (27%), Positives = 79/162 (48%), Gaps = 12/162 (7%)
Query: 644 PLHIAAKKNQMDIATTLLEYNAKPN---AESKAGFTPLHLSAQEGHTDMSSLLIEHGATV 700
PLH A +N+ LL ++KP+ + + G PLH S +++S L+ V
Sbjct: 5 PLHQACMENEFFKVQELL--HSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 701 S---HQAKNGLTPLHLCAQEDKVNVATITMFN---GAEIDPVTKAGFTPLHIASHFGQLN 754
+ + +G TP H+ + V ++++ +++ +T G T LH+A
Sbjct: 63 NLDDYPDDSGWTPFHIACSVGNLEVVK-SLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE 121
Query: 755 MVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAG 796
+ ++L+ENGA+V PLH+A+ G + +I+LL G G
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG 163
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 44/140 (31%), Positives = 68/140 (48%), Gaps = 12/140 (8%)
Query: 259 NGFTPLHIACKKNRYKSSHCNHVWVAKTLLDR--KADPNARALNGFTPLHIACKKNRYKV 316
+G+TP HIAC ++ V K+L DR K D N G T LH+A K ++V
Sbjct: 71 SGWTPFHIACS--------VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 122
Query: 317 VELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAG-AAPDTATVRGETPL-HLA 374
+ L++ GAS+ + PLH A+ +G + + L G +A + +G TPL H
Sbjct: 123 SQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 182
Query: 375 ARANQTDIVRILLRNGASVD 394
A + V ++ + GA D
Sbjct: 183 AEGHGDAAVLLVEKYGAEYD 202
Score = 51.2 bits (121), Expect = 3e-06, Method: Composition-based stats.
Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 3/126 (2%)
Query: 71 ATGQEEVAKILVDN--GATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHN 128
+ G EV K L D +N + G T L++A + V ++L+ G + + + N
Sbjct: 81 SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFN 140
Query: 129 ITPLHVACKWGKVAMVELLISKGAN-IEAKTRDGLTPLHCAARSGHDNVIDILIEKGAAL 187
PLH A G + ++ELL G + + + + G TPL A GH + +L+EK A
Sbjct: 141 QIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE 200
Query: 188 YSKTKN 193
Y N
Sbjct: 201 YDLVDN 206
Score = 47.4 bits (111), Expect = 4e-05, Method: Composition-based stats.
Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 5/114 (4%)
Query: 94 NGFTPLYMAAQENHDGVVRYLLSKGGNQTL---ATEHNITPLHVACKWGKVAMVELLISK 150
+G PL+ + + +LLSK N L + TP H+AC G + +V+ L +
Sbjct: 35 DGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDR 94
Query: 151 --GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMAS 202
++ T G+T LH A V LIE GA++ K K PLH A+
Sbjct: 95 PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAA 148
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 95/216 (43%), Gaps = 36/216 (16%)
Query: 368 ETPLHLAARANQTDIVRILLR-NGASVDARAREDQTPLHVASRLRRFSSAS---QSALTR 423
E+PL LAA+ N + LL+ G V R +T LH+A+ +A ++A
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63
Query: 424 V---------RGETPLHLAARANQTDIVRILLRNGASVDARA-------------REDQT 461
V G+T LH+A ++VR LL GASV ARA +
Sbjct: 64 VFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEH 123
Query: 462 PLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVAS-----ILTESGA 516
PL A+ +G+ +I LL++HGA + A G T LHI + A +L+ G
Sbjct: 124 PLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGG 183
Query: 517 SITATTK-----KGFTPLHLAAKYGRMKIAQMLLQK 547
+ + +G TP LA G + + Q L+QK
Sbjct: 184 DHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQK 219
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 98/218 (44%), Gaps = 37/218 (16%)
Query: 577 TPLHLAAKYGRMK-IAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPH 635
+PL LAAK ++ ++++L + V +G G T LH+A+ YD+ A++L++ A+P
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLME--AAPE 62
Query: 636 AVAK-------NGYTPLHIAAKKNQMDIATTLLE-------------YNAKPNAESKAGF 675
V + G T LHIA +++ LL ++ +P+ G
Sbjct: 63 LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGE 122
Query: 676 TPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFN------ 729
PL +A G ++ LLIEHGA + Q G T LH+ + A M+N
Sbjct: 123 HPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFAC-QMYNLLLSYD 181
Query: 730 ------GAEIDPVTKAGFTPLHIASHFGQLNMVRYLVE 761
E+ P G TP +A G + M ++L++
Sbjct: 182 GGDHLKSLELVP-NNQGLTPFKLAGVEGNIVMFQHLMQ 218
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 81/185 (43%), Gaps = 37/185 (20%)
Query: 643 TPLHIAAKKNQMDIATTLLEYN-AKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATV- 700
+PL +AAK+N + + LL++ + + G T LH++A + + + +L+E +
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64
Query: 701 ----SHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDP-------------VTKAGFTP 743
+ + G T LH+ VN+ + GA + + G P
Sbjct: 65 FEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHP 124
Query: 744 LHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATT 803
L A+ G +VR L+E+GA++ A +LG T LH +LI+ QPN T
Sbjct: 125 LSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLH-------ILIL--------QPNKT- 168
Query: 804 NLFCC 808
F C
Sbjct: 169 --FAC 171
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 25/163 (15%)
Query: 262 TPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLL 321
+PL +A K+N ++ ++K L + + R G T LHIA + + +L+
Sbjct: 5 SPLLLAAKENDVQA-------LSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLM 57
Query: 322 KYGASIA---ATTE--SGLTPLHVASFMGCMNIAIFLLQAGAA-------------PDTA 363
+ + T+E G T LH+A +N+ LL GA+ P
Sbjct: 58 EAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNL 117
Query: 364 TVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHV 406
GE PL AA +IVR+L+ +GA + A+ T LH+
Sbjct: 118 IYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHI 160
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 73/164 (44%), Gaps = 27/164 (16%)
Query: 196 APLHMAS-QGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKA--- 251
+PL +A+ + D +A +++L + G V + TALH+A+ ++ A L++
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64
Query: 252 -DPNARAL-NGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARA----------- 298
+P L G T LHIA +V + + LL R A +ARA
Sbjct: 65 FEPMTSELYEGQTALHIAVIN--------QNVNLVRALLARGASVSARATGSVFHYRPHN 116
Query: 299 --LNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHV 340
G PL A ++V LL+++GA I A G T LH+
Sbjct: 117 LIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHI 160
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 13/84 (15%)
Query: 130 TPLHVACKWGKVAMVELLISKGANIEAKTRD-------------GLTPLHCAARSGHDNV 176
T LH+A V +V L+++GA++ A+ G PL AA G + +
Sbjct: 77 TALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEI 136
Query: 177 IDILIEKGAALYSKTKNGLAPLHM 200
+ +LIE GA + ++ G LH+
Sbjct: 137 VRLLIEHGADIRAQDSLGNTVLHI 160
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 13/85 (15%)
Query: 95 GFTPLYMAAQENHDGVVRYLLSKG--------GNQTLATEHNIT-----PLHVACKWGKV 141
G T L++A + +VR LL++G G+ HN+ PL A G
Sbjct: 75 GQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSE 134
Query: 142 AMVELLISKGANIEAKTRDGLTPLH 166
+V LLI GA+I A+ G T LH
Sbjct: 135 EIVRLLIEHGADIRAQDSLGNTVLH 159
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 76/145 (52%), Gaps = 3/145 (2%)
Query: 582 AAKYGRMKIAQMLLQKD-APVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKN 640
AA G ++ + LL ++ D+ + G T L V + VAL LL +GASP+ +
Sbjct: 17 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSPAVALELLKQGASPNVQDAS 75
Query: 641 GYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATV 700
G +P+H AA+ +D L+E+ A NA G P+HL+ +EGH+ + S L + +
Sbjct: 76 GTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPE-SDL 134
Query: 701 SHQAKNGLTPLHLCAQEDKVNVATI 725
H+ +GLTPL L Q N+ I
Sbjct: 135 HHRDASGLTPLELARQRGAQNLMDI 159
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 445 LLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQ 504
LL+ GAS + + +P+H A+R G D +L++HGA V+A G +H++ +EG
Sbjct: 62 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 121
Query: 505 DEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
V S L + + G TPL LA + G + +L
Sbjct: 122 SSVVSFLAPE-SDLHHRDASGLTPLELARQRGAQNLMDIL 160
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 110 VVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAA 169
V LL +G + + +P+H A + G + +++L+ GA++ A G P+H A
Sbjct: 58 VALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAI 117
Query: 170 RSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQ 203
R GH +V+ L + + L+ + +GL PL +A Q
Sbjct: 118 REGHSSVVSFLAPE-SDLHHRDASGLTPLELARQ 150
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
G VA L+ GA+ NVQ +G +P++ AA+ ++ L+ G + P+
Sbjct: 54 GSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPI 113
Query: 133 HVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 180
H+A + G ++V L + +++ + GLTPL A + G N++DIL
Sbjct: 114 HLAIREGHSSVVSFLAPE-SDLHHRDASGLTPLELARQRGAQNLMDIL 160
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 69/144 (47%), Gaps = 7/144 (4%)
Query: 308 ACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRG 367
A + + +V LL + A G T L V F G +A+ LL+ GA+P+ G
Sbjct: 18 AARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSPAVALELLKQGASPNVQDASG 76
Query: 368 ETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSAS----QSAL-- 421
+P+H AAR D +++L+ +GA V+A P+H+A R S S +S L
Sbjct: 77 TSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPESDLHH 136
Query: 422 TRVRGETPLHLAARANQTDIVRIL 445
G TPL LA + +++ IL
Sbjct: 137 RDASGLTPLELARQRGAQNLMDIL 160
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 77/180 (42%), Gaps = 35/180 (19%)
Query: 615 ASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAG 674
A+ D Q V LL P A+ + G T L + + +A LL+ A PN + +G
Sbjct: 18 AARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPA-VALELLKQGASPNVQDASG 76
Query: 675 FTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEID 734
+P+H +A+ G D +L+EH GA+++
Sbjct: 77 TSPVHDAARTGFLDTLKVLVEH---------------------------------GADVN 103
Query: 735 PVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLG 794
+ G P+H+A G ++V +L ++++ G TPL A Q+G ++D+L G
Sbjct: 104 ALDSTGSLPIHLAIREGHSSVVSFLAPE-SDLHHRDASGLTPLELARQRGAQNLMDILQG 162
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 21/151 (13%)
Query: 374 AARANQTDIVRILLRNGASVDARAREDQTPLHV------ASRLRRFSSASQSALTRVRGE 427
AAR + ++ R+L R DA R +T L V A L + + G
Sbjct: 18 AARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPAVALELLKQGASPNVQDASGT 77
Query: 428 TPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDA 487
+P+H AAR D +++L+ +GA V+A P+H+A R G+ + S L A
Sbjct: 78 SPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL--------A 129
Query: 488 PTKD-------GYTALHISAKEGQDEVASIL 511
P D G T L ++ + G + IL
Sbjct: 130 PESDLHHRDASGLTPLELARQRGAQNLMDIL 160
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 67/153 (43%), Gaps = 10/153 (6%)
Query: 201 ASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNG 260
A++GD + R+L D + TAL V G VA LL + A PN + +G
Sbjct: 18 AARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSPAVALELLKQGASPNVQDASG 76
Query: 261 FTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELL 320
+P+H A + + K L++ AD NA G P+H+A ++ VV L
Sbjct: 77 TSPVHDAARTGFLDT--------LKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL 128
Query: 321 LKYGASIAATTESGLTPLHVASFMGCMNIAIFL 353
+ + SGLTPL +A G N+ L
Sbjct: 129 APE-SDLHHRDASGLTPLELARQRGAQNLMDIL 160
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 9/108 (8%)
Query: 283 VAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVAS 342
VA LL + A PN + +G +P+H A + +++L+++GA + A +G P+H+A
Sbjct: 58 VALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAI 117
Query: 343 FMGCMNIAIFLLQAGAAPDT----ATVRGETPLHLAARANQTDIVRIL 386
G ++ FL AP++ G TPL LA + +++ IL
Sbjct: 118 REGHSSVVSFL-----APESDLHHRDASGLTPLELARQRGAQNLMDIL 160
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 19/142 (13%)
Query: 486 DAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLL 545
DA + G TAL + G VA L + GAS G +P+H AA+ G + +
Sbjct: 38 DALNRFGKTALQV-MMFGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLK--- 93
Query: 546 QKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQG 605
+L E GA + A G P+HLA + G + L ++ + +
Sbjct: 94 --------------VLVEHGADVNALDSTGSLPIHLAIREGHSSVVS-FLAPESDLHHRD 138
Query: 606 KNGVTPLHVASHYDHQNVALLL 627
+G+TPL +A QN+ +L
Sbjct: 139 ASGLTPLELARQRGAQNLMDIL 160
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Query: 585 YGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTP 644
+G +A LL++ A + Q +G +P+H A+ + +L++ GA +A+ G P
Sbjct: 53 FGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLP 112
Query: 645 LHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEH 696
+H+A ++ + + L + + +G TPL L+ Q G ++ +L H
Sbjct: 113 IHLAIREGHSSV-VSFLAPESDLHHRDASGLTPLELARQRGAQNLMDILQGH 163
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 11/126 (8%)
Query: 534 KYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQM 593
++G+ + M+ A VA L + GAS G +P+H AA+ G + ++
Sbjct: 42 RFGKTALQVMMFGSPA-------VALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKV 94
Query: 594 LLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKK-- 651
L++ A V++ G P+H+A H +V L H A +G TPL +A ++
Sbjct: 95 LVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPESDLHHRDA-SGLTPLELARQRGA 153
Query: 652 -NQMDI 656
N MDI
Sbjct: 154 QNLMDI 159
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 41/76 (53%)
Query: 138 WGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAP 197
+G A+ L+ +GA+ + G +P+H AAR+G + + +L+E GA + + G P
Sbjct: 53 FGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLP 112
Query: 198 LHMASQGDHEAATRVL 213
+H+A + H + L
Sbjct: 113 IHLAIREGHSSVVSFL 128
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 180 LIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGH 239
L+++GA+ + +G +P+H A++ +VL+ HGA V+ + +H+A GH
Sbjct: 62 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 121
Query: 240 VRVAKTLLDRKADPNARALNGFTPLHIACKKN 271
V + L ++D + R +G TPL +A ++
Sbjct: 122 SSVV-SFLAPESDLHHRDASGLTPLELARQRG 152
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 734 DPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLL 793
D + + G T L + FG + L++ GA+ N G +P+H A++ G + + +L+
Sbjct: 38 DALNRFGKTALQVMM-FGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLV 96
Query: 794 GAGAQPNA 801
GA NA
Sbjct: 97 EHGADVNA 104
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 76/145 (52%), Gaps = 3/145 (2%)
Query: 582 AAKYGRMKIAQMLLQKD-APVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKN 640
AA G ++ + LL ++ D+ + G T L V + VAL LL +GASP+ +
Sbjct: 15 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSPAVALELLKQGASPNVQDAS 73
Query: 641 GYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATV 700
G +P+H AA+ +D L+E+ A NA G P+HL+ +EGH+ + S L + +
Sbjct: 74 GTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPE-SDL 132
Query: 701 SHQAKNGLTPLHLCAQEDKVNVATI 725
H+ +GLTPL L Q N+ I
Sbjct: 133 HHRDASGLTPLELARQRGAQNLMDI 157
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 445 LLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQ 504
LL+ GAS + + +P+H A+R G D +L++HGA V+A G +H++ +EG
Sbjct: 60 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 119
Query: 505 DEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
V S L + + G TPL LA + G + +L
Sbjct: 120 SSVVSFLAPE-SDLHHRDASGLTPLELARQRGAQNLMDIL 158
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 110 VVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAA 169
V LL +G + + +P+H A + G + +++L+ GA++ A G P+H A
Sbjct: 56 VALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAI 115
Query: 170 RSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQ 203
R GH +V+ L + + L+ + +GL PL +A Q
Sbjct: 116 REGHSSVVSFLAPE-SDLHHRDASGLTPLELARQ 148
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
G VA L+ GA+ NVQ +G +P++ AA+ ++ L+ G + P+
Sbjct: 52 GSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPI 111
Query: 133 HVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 180
H+A + G ++V L + +++ + GLTPL A + G N++DIL
Sbjct: 112 HLAIREGHSSVVSFLAPE-SDLHHRDASGLTPLELARQRGAQNLMDIL 158
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 69/144 (47%), Gaps = 7/144 (4%)
Query: 308 ACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRG 367
A + + +V LL + A G T L V F G +A+ LL+ GA+P+ G
Sbjct: 16 AARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSPAVALELLKQGASPNVQDASG 74
Query: 368 ETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSAS----QSAL-- 421
+P+H AAR D +++L+ +GA V+A P+H+A R S S +S L
Sbjct: 75 TSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPESDLHH 134
Query: 422 TRVRGETPLHLAARANQTDIVRIL 445
G TPL LA + +++ IL
Sbjct: 135 RDASGLTPLELARQRGAQNLMDIL 158
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 77/180 (42%), Gaps = 35/180 (19%)
Query: 615 ASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAG 674
A+ D Q V LL P A+ + G T L + + +A LL+ A PN + +G
Sbjct: 16 AARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPA-VALELLKQGASPNVQDASG 74
Query: 675 FTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEID 734
+P+H +A+ G D +L+EH GA+++
Sbjct: 75 TSPVHDAARTGFLDTLKVLVEH---------------------------------GADVN 101
Query: 735 PVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLG 794
+ G P+H+A G ++V +L ++++ G TPL A Q+G ++D+L G
Sbjct: 102 ALDSTGSLPIHLAIREGHSSVVSFLAPE-SDLHHRDASGLTPLELARQRGAQNLMDILQG 160
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 21/151 (13%)
Query: 374 AARANQTDIVRILLRNGASVDARAREDQTPLHV------ASRLRRFSSASQSALTRVRGE 427
AAR + ++ R+L R DA R +T L V A L + + G
Sbjct: 16 AARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPAVALELLKQGASPNVQDASGT 75
Query: 428 TPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDA 487
+P+H AAR D +++L+ +GA V+A P+H+A R G+ + S L A
Sbjct: 76 SPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL--------A 127
Query: 488 PTKD-------GYTALHISAKEGQDEVASIL 511
P D G T L ++ + G + IL
Sbjct: 128 PESDLHHRDASGLTPLELARQRGAQNLMDIL 158
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 67/153 (43%), Gaps = 10/153 (6%)
Query: 201 ASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNG 260
A++GD + R+L D + TAL V G VA LL + A PN + +G
Sbjct: 16 AARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSPAVALELLKQGASPNVQDASG 74
Query: 261 FTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELL 320
+P+H A + + K L++ AD NA G P+H+A ++ VV L
Sbjct: 75 TSPVHDAARTGFLDT--------LKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL 126
Query: 321 LKYGASIAATTESGLTPLHVASFMGCMNIAIFL 353
+ + SGLTPL +A G N+ L
Sbjct: 127 APE-SDLHHRDASGLTPLELARQRGAQNLMDIL 158
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 9/108 (8%)
Query: 283 VAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVAS 342
VA LL + A PN + +G +P+H A + +++L+++GA + A +G P+H+A
Sbjct: 56 VALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAI 115
Query: 343 FMGCMNIAIFLLQAGAAPDT----ATVRGETPLHLAARANQTDIVRIL 386
G ++ FL AP++ G TPL LA + +++ IL
Sbjct: 116 REGHSSVVSFL-----APESDLHHRDASGLTPLELARQRGAQNLMDIL 158
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 19/142 (13%)
Query: 486 DAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLL 545
DA + G TAL + G VA L + GAS G +P+H AA+ G + +
Sbjct: 36 DALNRFGKTALQVMMF-GSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLK--- 91
Query: 546 QKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQG 605
+L E GA + A G P+HLA + G + L ++ + +
Sbjct: 92 --------------VLVEHGADVNALDSTGSLPIHLAIREGHSSVVS-FLAPESDLHHRD 136
Query: 606 KNGVTPLHVASHYDHQNVALLL 627
+G+TPL +A QN+ +L
Sbjct: 137 ASGLTPLELARQRGAQNLMDIL 158
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Query: 585 YGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTP 644
+G +A LL++ A + Q +G +P+H A+ + +L++ GA +A+ G P
Sbjct: 51 FGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLP 110
Query: 645 LHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEH 696
+H+A ++ + + L + + +G TPL L+ Q G ++ +L H
Sbjct: 111 IHLAIREGHSSV-VSFLAPESDLHHRDASGLTPLELARQRGAQNLMDILQGH 161
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 11/126 (8%)
Query: 534 KYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQM 593
++G+ + M+ A VA L + GAS G +P+H AA+ G + ++
Sbjct: 40 RFGKTALQVMMFGSPA-------VALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKV 92
Query: 594 LLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKK-- 651
L++ A V++ G P+H+A H +V L H A +G TPL +A ++
Sbjct: 93 LVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPESDLHHRDA-SGLTPLELARQRGA 151
Query: 652 -NQMDI 656
N MDI
Sbjct: 152 QNLMDI 157
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 41/76 (53%)
Query: 138 WGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAP 197
+G A+ L+ +GA+ + G +P+H AAR+G + + +L+E GA + + G P
Sbjct: 51 FGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLP 110
Query: 198 LHMASQGDHEAATRVL 213
+H+A + H + L
Sbjct: 111 IHLAIREGHSSVVSFL 126
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 180 LIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGH 239
L+++GA+ + +G +P+H A++ +VL+ HGA V+ + +H+A GH
Sbjct: 60 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 119
Query: 240 VRVAKTLLDRKADPNARALNGFTPLHIACKK 270
V + L ++D + R +G TPL +A ++
Sbjct: 120 SSVV-SFLAPESDLHHRDASGLTPLELARQR 149
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 734 DPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLL 793
D + + G T L + FG + L++ GA+ N G +P+H A++ G + + +L+
Sbjct: 36 DALNRFGKTALQVMM-FGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLV 94
Query: 794 GAGAQPNA 801
GA NA
Sbjct: 95 EHGADVNA 102
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 68.2 bits (165), Expect = 2e-11, Method: Composition-based stats.
Identities = 66/231 (28%), Positives = 94/231 (40%), Gaps = 36/231 (15%)
Query: 304 PLHIACKKNRY-KVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQA------ 356
PLH AC +N + KV ELL + + + G PLH + I FLL
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 357 GAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSA 416
PD + G TP H+A ++V+ L D +Q
Sbjct: 65 DDYPDDS---GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQ--------------- 106
Query: 417 SQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIAS 476
G T LHLA ++ + L+ NGASV + + +Q PLH A+ +G+ +
Sbjct: 107 ---------GVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIE 157
Query: 477 LLLQHGAS-VDAPTKDGYTALHISAKEGQDEVASILTES-GASITATTKKG 525
LL G S V+ K G+T L + EG + A +L E GA KG
Sbjct: 158 LLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG 208
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 58/196 (29%), Positives = 82/196 (41%), Gaps = 15/196 (7%)
Query: 556 KVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQK-------DAPVDSQGKNG 608
KV +L + + + G PLH + + +I LL K D P DS G
Sbjct: 17 KVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDS----G 72
Query: 609 VTPLHVASHYDHQNVALLLLDRGASP--HAVAKNGYTPLHIAAKKNQMDIATTLLEYNAK 666
TP H+A + V L DR P + + G T LH+A K +++ L+E A
Sbjct: 73 WTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS 132
Query: 667 PNAESKAGFTPLHLSAQEGHTDMSSLLIEHG-ATVSHQAKNGLTPLHLCAQEDKVNVATI 725
+ K PLH +A G + LL G + V+ Q K G TPL E + A +
Sbjct: 133 VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVL 192
Query: 726 TMFN-GAEIDPVTKAG 740
+ GAE D V G
Sbjct: 193 LVEKYGAEYDLVDNKG 208
Score = 60.1 bits (144), Expect = 5e-09, Method: Composition-based stats.
Identities = 51/177 (28%), Positives = 75/177 (42%), Gaps = 21/177 (11%)
Query: 426 GETPLHLAARANQTDIVRILLRNGASVDARAREDQ---TPLHVASRLGNGDIASLLLQHG 482
G PLH + +I LL +V+ D TP H+A +GN ++ L
Sbjct: 36 GRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRP 95
Query: 483 ASVDAP--TKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKI 540
D T G T LH++ + EV+ L E+GAS+ K PLH AA G +K+
Sbjct: 96 LKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKL 155
Query: 541 AQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQK 597
++L GK A + K+G+TPL A G A +L++K
Sbjct: 156 IELLC-------GLGKSA---------VNWQDKQGWTPLFHALAEGHGDAAVLLVEK 196
Score = 59.3 bits (142), Expect = 9e-09, Method: Composition-based stats.
Identities = 44/162 (27%), Positives = 79/162 (48%), Gaps = 12/162 (7%)
Query: 644 PLHIAAKKNQMDIATTLLEYNAKPN---AESKAGFTPLHLSAQEGHTDMSSLLIEHGATV 700
PLH A +N+ LL ++KP+ + + G PLH S +++S L+ V
Sbjct: 5 PLHQACMENEFFKVQELL--HSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 701 S---HQAKNGLTPLHLCAQEDKVNVATITMFN---GAEIDPVTKAGFTPLHIASHFGQLN 754
+ + +G TP H+ + V ++++ +++ +T G T LH+A
Sbjct: 63 NLDDYPDDSGWTPFHIACSVGNLEVVK-SLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE 121
Query: 755 MVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAG 796
+ ++L+ENGA+V PLH+A+ G + +I+LL G G
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG 163
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 44/140 (31%), Positives = 68/140 (48%), Gaps = 12/140 (8%)
Query: 259 NGFTPLHIACKKNRYKSSHCNHVWVAKTLLDR--KADPNARALNGFTPLHIACKKNRYKV 316
+G+TP HIAC ++ V K+L DR K D N G T LH+A K ++V
Sbjct: 71 SGWTPFHIACS--------VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 122
Query: 317 VELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAG-AAPDTATVRGETPL-HLA 374
+ L++ GAS+ + PLH A+ +G + + L G +A + +G TPL H
Sbjct: 123 SQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 182
Query: 375 ARANQTDIVRILLRNGASVD 394
A + V ++ + GA D
Sbjct: 183 AEGHGDAAVLLVEKYGAEYD 202
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 3/126 (2%)
Query: 71 ATGQEEVAKILVDN--GATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHN 128
+ G EV K L D +N + G T L++A + V ++L+ G + + + N
Sbjct: 81 SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFN 140
Query: 129 ITPLHVACKWGKVAMVELLISKGAN-IEAKTRDGLTPLHCAARSGHDNVIDILIEKGAAL 187
PLH A G + ++ELL G + + + + G TPL A GH + +L+EK A
Sbjct: 141 QIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE 200
Query: 188 YSKTKN 193
Y N
Sbjct: 201 YDLVDN 206
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 5/114 (4%)
Query: 94 NGFTPLYMAAQENHDGVVRYLLSKGGNQTL---ATEHNITPLHVACKWGKVAMVELLISK 150
+G PL+ + + +LLSK N L + TP H+AC G + +V+ L +
Sbjct: 35 DGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDR 94
Query: 151 --GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMAS 202
++ T G+T LH A V LIE GA++ K K PLH A+
Sbjct: 95 PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAA 148
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 71/146 (48%), Gaps = 2/146 (1%)
Query: 553 SQGKVASILT--ESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVT 610
+QG++ + T E I T ++GFTPL AA +G++ + + LLQ A GK +
Sbjct: 10 AQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRES 69
Query: 611 PLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAE 670
L +A + ++ +LLD G + NG TPL A N + LLE A P E
Sbjct: 70 ALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE 129
Query: 671 SKAGFTPLHLSAQEGHTDMSSLLIEH 696
+ +G+ + L+ G+ + ++ H
Sbjct: 130 TDSGYNSMDLAVALGYRSVQQVIESH 155
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 70/166 (42%), Gaps = 26/166 (15%)
Query: 495 ALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQ 554
++H A +G+ + E I T ++GFTPL AA +G++ + + LLQ
Sbjct: 4 SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ-------- 55
Query: 555 GKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHV 614
+GA K + L LA G I +MLL V+ NG TPL
Sbjct: 56 ---------NGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLY 106
Query: 615 ASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTL 660
A H +H +LL+ GA P +GY N MD+A L
Sbjct: 107 AVHGNHVKCVKMLLESGADPTIETDSGY---------NSMDLAVAL 143
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 69/154 (44%)
Query: 63 SLSNTKFEATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQT 122
SLS + A G+ ++ IN GFTPL AA VV +LL G +
Sbjct: 2 SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ 61
Query: 123 LATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIE 182
L + + L +AC G +V++L+ G ++ +G TPL A H + +L+E
Sbjct: 62 LLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE 121
Query: 183 KGAALYSKTKNGLAPLHMASQGDHEAATRVLIYH 216
GA +T +G + +A + + +V+ H
Sbjct: 122 SGADPTIETDSGYNSMDLAVALGYRSVQQVIESH 155
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 3/141 (2%)
Query: 404 LHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPL 463
L++A+R+ + + + T G TPL AA Q +V LL+NGA + ++ L
Sbjct: 15 LYLATRIEQENVINH---TDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESAL 71
Query: 464 HVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTK 523
+A G DI +LL G V+ +G T L + + +L ESGA T T
Sbjct: 72 SLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETD 131
Query: 524 KGFTPLHLAAKYGRMKIAQML 544
G+ + LA G + Q++
Sbjct: 132 SGYNSMDLAVALGYRSVQQVI 152
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 55/113 (48%)
Query: 639 KNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGA 698
+ G+TPL AA Q+ + LL+ A P K + L L+ +G+TD+ +L++ G
Sbjct: 32 EEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGV 91
Query: 699 TVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFG 751
V+ NG TPL + V + + +GA+ T +G+ + +A G
Sbjct: 92 DVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALG 144
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 59/127 (46%)
Query: 678 LHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVT 737
+H A +G + IE ++H + G TPL A ++ V + NGA+ +
Sbjct: 5 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 64
Query: 738 KAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGA 797
K + L +A G ++V+ L++ G +VN G TPL A V + +LL +GA
Sbjct: 65 KGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 124
Query: 798 QPNATTN 804
P T+
Sbjct: 125 DPTIETD 131
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 58/155 (37%), Gaps = 26/155 (16%)
Query: 327 IAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRIL 386
I T E G TPL A+ G + + FLLQ GA P E+ L LA TDIV++L
Sbjct: 27 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 86
Query: 387 LRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILL 446
L G V+ G TPL A N V++LL
Sbjct: 87 LDCGVDVNEYDW--------------------------NGGTPLLYAVHGNHVKCVKMLL 120
Query: 447 RNGASVDARAREDQTPLHVASRLGNGDIASLLLQH 481
+GA + +A LG + ++ H
Sbjct: 121 ESGADPTIETDSGYNSMDLAVALGYRSVQQVIESH 155
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 69/170 (40%), Gaps = 28/170 (16%)
Query: 425 RGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGAS 484
+GE L+LA R Q +++ + E TPL A+ G + LLQ+GA
Sbjct: 11 QGEM-LYLATRIEQENVI----------NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 59
Query: 485 VDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
K +AL ++ +G ++ +L + G + G TPL A +K +ML
Sbjct: 60 PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKML 119
Query: 545 LQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 594
L ESGA T T G+ + LA G + Q++
Sbjct: 120 L-----------------ESGADPTIETDSGYNSMDLAVALGYRSVQQVI 152
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 62/140 (44%)
Query: 645 LHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQA 704
+H A + +M T +E N + GFTPL +A G + L+++GA
Sbjct: 5 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 64
Query: 705 KNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGA 764
K + L L + ++ + + G +++ G TPL A H + V+ L+E+GA
Sbjct: 65 KGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 124
Query: 765 NVNATTNLGYTPLHQASQQG 784
+ T+ GY + A G
Sbjct: 125 DPTIETDSGYNSMDLAVALG 144
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 59/144 (40%), Gaps = 18/144 (12%)
Query: 165 LHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEIT 224
L+ A R +NVI+ + G PL A+ A L+ +GA +
Sbjct: 15 LYLATRIEQENVIN----------HTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 64
Query: 225 VDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVA 284
+AL +A G+ + K LLD D N NG TPL A H NHV
Sbjct: 65 KGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAV--------HGNHVKCV 116
Query: 285 KTLLDRKADPNARALNGFTPLHIA 308
K LL+ ADP +G+ + +A
Sbjct: 117 KMLLESGADPTIETDSGYNSMDLA 140
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 56/135 (41%)
Query: 579 LHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVA 638
+H A G M ++++ ++ + G TPL A+ + V LL GA P +
Sbjct: 5 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 64
Query: 639 KNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGA 698
K + L +A K DI LL+ N G TPL + H +L+E GA
Sbjct: 65 KGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 124
Query: 699 TVSHQAKNGLTPLHL 713
+ + +G + L
Sbjct: 125 DPTIETDSGYNSMDL 139
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 2/126 (1%)
Query: 301 GFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAP 360
GFTPL A + VVE LL+ GA + + L +A G +I LL G
Sbjct: 34 GFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDV 93
Query: 361 DTATVRGETPLHLAARANQTDIVRILLRNGA--SVDARAREDQTPLHVASRLRRFSSASQ 418
+ G TPL A N V++LL +GA +++ + + L VA R +
Sbjct: 94 NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIE 153
Query: 419 SALTRV 424
S L ++
Sbjct: 154 SHLLKL 159
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%)
Query: 159 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGA 218
+G TPL AA G V++ L++ GA K + L +A + ++L+ G
Sbjct: 32 EEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGV 91
Query: 219 GVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIA 267
V+E + T L A H HV+ K LL+ ADP +G+ + +A
Sbjct: 92 DVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLA 140
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 10/120 (8%)
Query: 99 LYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKT 158
LY+A + + V+ + E TPL A G++A+VE L+ GA+ +
Sbjct: 15 LYLATRIEQENVINH----------TDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 64
Query: 159 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGA 218
+ + L A G+ +++ +L++ G + NG PL A G+H ++L+ GA
Sbjct: 65 KGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 124
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 8/115 (6%)
Query: 260 GFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVEL 319
GFTPL + ++H + V + LL ADP + L +AC K +V++
Sbjct: 34 GFTPL-------MWAAAH-GQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKM 85
Query: 320 LLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLA 374
LL G + +G TPL A + LL++GA P T G + LA
Sbjct: 86 LLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLA 140
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 71/146 (48%), Gaps = 2/146 (1%)
Query: 553 SQGKVASILT--ESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVT 610
+QG++ + T E I T ++GFTPL AA +G++ + + LLQ A GK +
Sbjct: 28 AQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRES 87
Query: 611 PLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAE 670
L +A + ++ +LLD G + NG TPL A N + LLE A P E
Sbjct: 88 ALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE 147
Query: 671 SKAGFTPLHLSAQEGHTDMSSLLIEH 696
+ +G+ + L+ G+ + ++ H
Sbjct: 148 TDSGYNSMDLAVALGYRSVQQVIESH 173
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 70/166 (42%), Gaps = 26/166 (15%)
Query: 495 ALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQ 554
++H A +G+ + E I T ++GFTPL AA +G++ + + LLQ
Sbjct: 22 SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ-------- 73
Query: 555 GKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHV 614
+GA K + L LA G I +MLL V+ NG TPL
Sbjct: 74 ---------NGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLY 124
Query: 615 ASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTL 660
A H +H +LL+ GA P +GY N MD+A L
Sbjct: 125 AVHGNHVKCVKMLLESGADPTIETDSGY---------NSMDLAVAL 161
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 69/154 (44%)
Query: 63 SLSNTKFEATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQT 122
SLS + A G+ ++ IN GFTPL AA VV +LL G +
Sbjct: 20 SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ 79
Query: 123 LATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIE 182
L + + L +AC G +V++L+ G ++ +G TPL A H + +L+E
Sbjct: 80 LLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE 139
Query: 183 KGAALYSKTKNGLAPLHMASQGDHEAATRVLIYH 216
GA +T +G + +A + + +V+ H
Sbjct: 140 SGADPTIETDSGYNSMDLAVALGYRSVQQVIESH 173
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 3/141 (2%)
Query: 404 LHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPL 463
L++A+R+ + + + T G TPL AA Q +V LL+NGA + ++ L
Sbjct: 33 LYLATRIEQENVINH---TDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESAL 89
Query: 464 HVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTK 523
+A G DI +LL G V+ +G T L + + +L ESGA T T
Sbjct: 90 SLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETD 149
Query: 524 KGFTPLHLAAKYGRMKIAQML 544
G+ + LA G + Q++
Sbjct: 150 SGYNSMDLAVALGYRSVQQVI 170
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 59/127 (46%)
Query: 678 LHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVT 737
+H A +G + IE ++H + G TPL A ++ V + NGA+ +
Sbjct: 23 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 82
Query: 738 KAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGA 797
K + L +A G ++V+ L++ G +VN G TPL A V + +LL +GA
Sbjct: 83 KGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 142
Query: 798 QPNATTN 804
P T+
Sbjct: 143 DPTIETD 149
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 59/144 (40%), Gaps = 18/144 (12%)
Query: 165 LHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEIT 224
L+ A R +NVI+ + G PL A+ A L+ +GA +
Sbjct: 33 LYLATRIEQENVIN----------HTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 82
Query: 225 VDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVA 284
+AL +A G+ + K LLD D N NG TPL A H NHV
Sbjct: 83 KGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAV--------HGNHVKCV 134
Query: 285 KTLLDRKADPNARALNGFTPLHIA 308
K LL+ ADP +G+ + +A
Sbjct: 135 KMLLESGADPTIETDSGYNSMDLA 158
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 58/155 (37%), Gaps = 26/155 (16%)
Query: 327 IAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRIL 386
I T E G TPL A+ G + + FLLQ GA P E+ L LA TDIV++L
Sbjct: 45 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 104
Query: 387 LRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILL 446
L G V+ G TPL A N V++LL
Sbjct: 105 LDCGVDVNEYDW--------------------------NGGTPLLYAVHGNHVKCVKMLL 138
Query: 447 RNGASVDARAREDQTPLHVASRLGNGDIASLLLQH 481
+GA + +A LG + ++ H
Sbjct: 139 ESGADPTIETDSGYNSMDLAVALGYRSVQQVIESH 173
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 60/133 (45%)
Query: 645 LHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQA 704
+H A + +M T +E N + GFTPL +A G + L+++GA
Sbjct: 23 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 82
Query: 705 KNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGA 764
K + L L + ++ + + G +++ G TPL A H + V+ L+E+GA
Sbjct: 83 KGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 142
Query: 765 NVNATTNLGYTPL 777
+ T+ GY +
Sbjct: 143 DPTIETDSGYNSM 155
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 69/170 (40%), Gaps = 28/170 (16%)
Query: 425 RGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGAS 484
+GE L+LA R Q +++ + E TPL A+ G + LLQ+GA
Sbjct: 29 QGEM-LYLATRIEQENVI----------NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 77
Query: 485 VDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
K +AL ++ +G ++ +L + G + G TPL A +K +ML
Sbjct: 78 PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKML 137
Query: 545 LQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 594
L ESGA T T G+ + LA G + Q++
Sbjct: 138 L-----------------ESGADPTIETDSGYNSMDLAVALGYRSVQQVI 170
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 56/135 (41%)
Query: 579 LHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVA 638
+H A G M ++++ ++ + G TPL A+ + V LL GA P +
Sbjct: 23 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 82
Query: 639 KNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGA 698
K + L +A K DI LL+ N G TPL + H +L+E GA
Sbjct: 83 KGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 142
Query: 699 TVSHQAKNGLTPLHL 713
+ + +G + L
Sbjct: 143 DPTIETDSGYNSMDL 157
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%)
Query: 159 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGA 218
+G TPL AA G V++ L++ GA K + L +A + ++L+ G
Sbjct: 50 EEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGV 109
Query: 219 GVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIA 267
V+E + T L A H HV+ K LL+ ADP +G+ + +A
Sbjct: 110 DVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLA 158
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 2/126 (1%)
Query: 301 GFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAP 360
GFTPL A + VVE LL+ GA + + L +A G +I LL G
Sbjct: 52 GFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDV 111
Query: 361 DTATVRGETPLHLAARANQTDIVRILLRNGA--SVDARAREDQTPLHVASRLRRFSSASQ 418
+ G TPL A N V++LL +GA +++ + + L VA R +
Sbjct: 112 NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIE 171
Query: 419 SALTRV 424
S L ++
Sbjct: 172 SHLLKL 177
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 10/120 (8%)
Query: 99 LYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKT 158
LY+A + + V+ + E TPL A G++A+VE L+ GA+ +
Sbjct: 33 LYLATRIEQENVINH----------TDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 82
Query: 159 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGA 218
+ + L A G+ +++ +L++ G + NG PL A G+H ++L+ GA
Sbjct: 83 KGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 142
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 8/115 (6%)
Query: 260 GFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVEL 319
GFTPL + ++H + V + LL ADP + L +AC K +V++
Sbjct: 52 GFTPL-------MWAAAH-GQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKM 103
Query: 320 LLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLA 374
LL G + +G TPL A + LL++GA P T G + LA
Sbjct: 104 LLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLA 158
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 71/146 (48%), Gaps = 2/146 (1%)
Query: 553 SQGKVASILT--ESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVT 610
+QG++ + T E I T ++GFTPL AA +G++ + + LLQ A GK +
Sbjct: 12 AQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRES 71
Query: 611 PLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAE 670
L +A + ++ +LLD G + NG TPL A N + LLE A P E
Sbjct: 72 ALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE 131
Query: 671 SKAGFTPLHLSAQEGHTDMSSLLIEH 696
+ +G+ + L+ G+ + ++ H
Sbjct: 132 TDSGYNSMDLAVALGYRSVQQVIESH 157
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 70/166 (42%), Gaps = 26/166 (15%)
Query: 495 ALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQ 554
++H A +G+ + E I T ++GFTPL AA +G++ + + LLQ
Sbjct: 6 SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ-------- 57
Query: 555 GKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHV 614
+GA K + L LA G I +MLL V+ NG TPL
Sbjct: 58 ---------NGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLY 108
Query: 615 ASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTL 660
A H +H +LL+ GA P +GY N MD+A L
Sbjct: 109 AVHGNHVKCVKMLLESGADPTIETDSGY---------NSMDLAVAL 145
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 69/154 (44%)
Query: 63 SLSNTKFEATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQT 122
SLS + A G+ ++ IN GFTPL AA VV +LL G +
Sbjct: 4 SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ 63
Query: 123 LATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIE 182
L + + L +AC G +V++L+ G ++ +G TPL A H + +L+E
Sbjct: 64 LLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE 123
Query: 183 KGAALYSKTKNGLAPLHMASQGDHEAATRVLIYH 216
GA +T +G + +A + + +V+ H
Sbjct: 124 SGADPTIETDSGYNSMDLAVALGYRSVQQVIESH 157
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 3/141 (2%)
Query: 404 LHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPL 463
L++A+R+ + + + T G TPL AA Q +V LL+NGA + ++ L
Sbjct: 17 LYLATRIEQENVINH---TDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESAL 73
Query: 464 HVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTK 523
+A G DI +LL G V+ +G T L + + +L ESGA T T
Sbjct: 74 SLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETD 133
Query: 524 KGFTPLHLAAKYGRMKIAQML 544
G+ + LA G + Q++
Sbjct: 134 SGYNSMDLAVALGYRSVQQVI 154
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 55/113 (48%)
Query: 639 KNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGA 698
+ G+TPL AA Q+ + LL+ A P K + L L+ +G+TD+ +L++ G
Sbjct: 34 EEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGV 93
Query: 699 TVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFG 751
V+ NG TPL + V + + +GA+ T +G+ + +A G
Sbjct: 94 DVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALG 146
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 59/127 (46%)
Query: 678 LHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVT 737
+H A +G + IE ++H + G TPL A ++ V + NGA+ +
Sbjct: 7 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 66
Query: 738 KAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGA 797
K + L +A G ++V+ L++ G +VN G TPL A V + +LL +GA
Sbjct: 67 KGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 126
Query: 798 QPNATTN 804
P T+
Sbjct: 127 DPTIETD 133
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 58/155 (37%), Gaps = 26/155 (16%)
Query: 327 IAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRIL 386
I T E G TPL A+ G + + FLLQ GA P E+ L LA TDIV++L
Sbjct: 29 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 88
Query: 387 LRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILL 446
L G V+ G TPL A N V++LL
Sbjct: 89 LDCGVDVNEYDW--------------------------NGGTPLLYAVHGNHVKCVKMLL 122
Query: 447 RNGASVDARAREDQTPLHVASRLGNGDIASLLLQH 481
+GA + +A LG + ++ H
Sbjct: 123 ESGADPTIETDSGYNSMDLAVALGYRSVQQVIESH 157
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 59/144 (40%), Gaps = 18/144 (12%)
Query: 165 LHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEIT 224
L+ A R +NVI+ + G PL A+ A L+ +GA +
Sbjct: 17 LYLATRIEQENVIN----------HTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 66
Query: 225 VDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVA 284
+AL +A G+ + K LLD D N NG TPL A H NHV
Sbjct: 67 KGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAV--------HGNHVKCV 118
Query: 285 KTLLDRKADPNARALNGFTPLHIA 308
K LL+ ADP +G+ + +A
Sbjct: 119 KMLLESGADPTIETDSGYNSMDLA 142
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 62/140 (44%)
Query: 645 LHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQA 704
+H A + +M T +E N + GFTPL +A G + L+++GA
Sbjct: 7 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 66
Query: 705 KNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGA 764
K + L L + ++ + + G +++ G TPL A H + V+ L+E+GA
Sbjct: 67 KGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 126
Query: 765 NVNATTNLGYTPLHQASQQG 784
+ T+ GY + A G
Sbjct: 127 DPTIETDSGYNSMDLAVALG 146
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 69/170 (40%), Gaps = 28/170 (16%)
Query: 425 RGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGAS 484
+GE L+LA R Q +++ + E TPL A+ G + LLQ+GA
Sbjct: 13 QGEM-LYLATRIEQENVI----------NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61
Query: 485 VDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
K +AL ++ +G ++ +L + G + G TPL A +K +ML
Sbjct: 62 PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKML 121
Query: 545 LQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 594
L ESGA T T G+ + LA G + Q++
Sbjct: 122 L-----------------ESGADPTIETDSGYNSMDLAVALGYRSVQQVI 154
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 56/135 (41%)
Query: 579 LHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVA 638
+H A G M ++++ ++ + G TPL A+ + V LL GA P +
Sbjct: 7 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 66
Query: 639 KNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGA 698
K + L +A K DI LL+ N G TPL + H +L+E GA
Sbjct: 67 KGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 126
Query: 699 TVSHQAKNGLTPLHL 713
+ + +G + L
Sbjct: 127 DPTIETDSGYNSMDL 141
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 2/126 (1%)
Query: 301 GFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAP 360
GFTPL A + VVE LL+ GA + + L +A G +I LL G
Sbjct: 36 GFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDV 95
Query: 361 DTATVRGETPLHLAARANQTDIVRILLRNGA--SVDARAREDQTPLHVASRLRRFSSASQ 418
+ G TPL A N V++LL +GA +++ + + L VA R +
Sbjct: 96 NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIE 155
Query: 419 SALTRV 424
S L ++
Sbjct: 156 SHLLKL 161
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%)
Query: 159 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGA 218
+G TPL AA G V++ L++ GA K + L +A + ++L+ G
Sbjct: 34 EEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGV 93
Query: 219 GVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIA 267
V+E + T L A H HV+ K LL+ ADP +G+ + +A
Sbjct: 94 DVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLA 142
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 10/120 (8%)
Query: 99 LYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKT 158
LY+A + + V+ + E TPL A G++A+VE L+ GA+ +
Sbjct: 17 LYLATRIEQENVINH----------TDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 66
Query: 159 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGA 218
+ + L A G+ +++ +L++ G + NG PL A G+H ++L+ GA
Sbjct: 67 KGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 126
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 8/115 (6%)
Query: 260 GFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVEL 319
GFTPL + ++H + V + LL ADP + L +AC K +V++
Sbjct: 36 GFTPL-------MWAAAH-GQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKM 87
Query: 320 LLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLA 374
LL G + +G TPL A + LL++GA P T G + LA
Sbjct: 88 LLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLA 142
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 58/110 (52%), Gaps = 1/110 (0%)
Query: 623 VALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSA 682
+A LL RGA+P + G+ +H AA+ +D TLLE+ A N E G PLHL+A
Sbjct: 52 IARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAA 111
Query: 683 QEGHTDMSSLLIEHGAT-VSHQAKNGLTPLHLCAQEDKVNVATITMFNGA 731
+EGH + L++H A+ V H+ G T L + V ++ NGA
Sbjct: 112 KEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 17/135 (12%)
Query: 460 QTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASIT 519
+T L V +LGN +IA LL GA+ D + G+ +H +A+ G + L E A +
Sbjct: 39 RTALQVM-KLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVN 97
Query: 520 ATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPL 579
+G PLHLAAK G +++ + L++ A +++ KG T
Sbjct: 98 IEDNEGNLPLHLAAKEGHLRVVEFLVKHTA----------------SNVGHRNHKGDTAC 141
Query: 580 HLAAKYGRMKIAQML 594
LA YGR ++ ++
Sbjct: 142 DLARLYGRNEVVSLM 156
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Query: 283 VAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVAS 342
+A+ LL R A+P+ + GF +H A + ++ LL++ A + G PLH+A+
Sbjct: 52 IARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAA 111
Query: 343 FMGCMNIAIFLLQAGAAP-DTATVRGETPLHLAARANQTDIVRILLRNGAS 392
G + + FL++ A+ +G+T LA + ++V ++ NGA
Sbjct: 112 KEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%)
Query: 722 VATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQAS 781
+A + GA D + GF +H A+ G L+ ++ L+E A+VN N G PLH A+
Sbjct: 52 IARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAA 111
Query: 782 QQGRVLIIDLLL 793
++G + +++ L+
Sbjct: 112 KEGHLRVVEFLV 123
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 426 GETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGAS- 484
G +H AARA D ++ LL A V+ E PLH+A++ G+ + L++H AS
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129
Query: 485 VDAPTKDGYTALHISAKEGQDEVASILTESGAS 517
V G TA ++ G++EV S++ +GA
Sbjct: 130 VGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 130 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 189
T L V K G + L+ +GAN + K R G +H AAR+G + + L+E A +
Sbjct: 40 TALQV-MKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNI 98
Query: 190 KTKNGLAPLHMASQGDHEAATRVLIYHGA 218
+ G PLH+A++ H L+ H A
Sbjct: 99 EDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 57/126 (45%), Gaps = 9/126 (7%)
Query: 334 GLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASV 393
G T L V +G IA LL GA PD G +H AARA D ++ LL A V
Sbjct: 38 GRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 394 DARAREDQTPLHVAS-----RLRRF---SSASQSALTRVRGETPLHLAARANQTDIVRIL 445
+ E PLH+A+ R+ F +AS +G+T LA + ++V ++
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Query: 446 LRNGAS 451
NGA
Sbjct: 157 QANGAG 162
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%)
Query: 110 VVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAA 169
+ R LL +G N L +H A + G + ++ L+ A++ + +G PLH AA
Sbjct: 52 IARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAA 111
Query: 170 RSGHDNVIDILIEKGAA 186
+ GH V++ L++ A+
Sbjct: 112 KEGHLRVVEFLVKHTAS 128
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%)
Query: 556 KVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVA 615
++A L GA+ + GF +H AA+ G + Q LL+ A V+ + G PLH+A
Sbjct: 51 EIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLA 110
Query: 616 SHYDHQNVALLLLDRGAS 633
+ H V L+ AS
Sbjct: 111 AKEGHLRVVEFLVKHTAS 128
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 74/151 (49%), Gaps = 2/151 (1%)
Query: 648 AAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNG 707
AA + ++ T+LL+ N NA++ G T L + + G+ +++ L+ GA + + G
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV-MKLGNPEIARRLLLRGANPDLKDRTG 70
Query: 708 LTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGA-NV 766
+H A+ ++ + A+++ G PLH+A+ G L +V +LV++ A NV
Sbjct: 71 FAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV 130
Query: 767 NATTNLGYTPLHQASQQGRVLIIDLLLGAGA 797
+ G T A GR ++ L+ GA
Sbjct: 131 GHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 37.0 bits (84), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 58/134 (43%), Gaps = 10/134 (7%)
Query: 194 GLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADP 253
G L + G+ E A R+L+ GA D +H A+ G + +TLL+ +AD
Sbjct: 38 GRTALQVMKLGNPEIARRLLL-RGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 254 NARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKA-DPNARALNGFTPLHIACKKN 312
N G PLH+A K+ H+ V + L+ A + R G T +A
Sbjct: 97 NIEDNEGNLPLHLAAKE--------GHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYG 148
Query: 313 RYKVVELLLKYGAS 326
R +VV L+ GA
Sbjct: 149 RNEVVSLMQANGAG 162
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Query: 301 GFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAP 360
G T L + K ++ LL GA+ +G +H A+ G ++ LL+ A
Sbjct: 38 GRTALQV-MKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 361 DTATVRGETPLHLAARANQTDIVRILLRNGAS 392
+ G PLHLAA+ +V L+++ AS
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 58/110 (52%), Gaps = 1/110 (0%)
Query: 623 VALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSA 682
+A LL RGA+P + G+ +H AA+ +D TLLE+ A N E G PLHL+A
Sbjct: 52 IARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAA 111
Query: 683 QEGHTDMSSLLIEHGAT-VSHQAKNGLTPLHLCAQEDKVNVATITMFNGA 731
+EGH + L++H A+ V H+ G T L + V ++ NGA
Sbjct: 112 KEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 17/135 (12%)
Query: 460 QTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASIT 519
+T L V +LGN +IA LL GA+ D + G+ +H +A+ G + L E A +
Sbjct: 39 RTALQVM-KLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVN 97
Query: 520 ATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPL 579
+G PLHLAAK G +++ + L++ A +++ KG T
Sbjct: 98 IEDNEGNLPLHLAAKEGHLRVVEFLVKHTA----------------SNVGHRNHKGDTAC 141
Query: 580 HLAAKYGRMKIAQML 594
LA YGR ++ ++
Sbjct: 142 DLARLYGRNEVVSLM 156
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Query: 283 VAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVAS 342
+A+ LL R A+P+ + GF +H A + ++ LL++ A + G PLH+A+
Sbjct: 52 IARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAA 111
Query: 343 FMGCMNIAIFLLQAGAAP-DTATVRGETPLHLAARANQTDIVRILLRNGAS 392
G + + FL++ A+ +G+T LA + ++V ++ NGA
Sbjct: 112 KEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%)
Query: 722 VATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQAS 781
+A + GA D + GF +H A+ G L+ ++ L+E A+VN N G PLH A+
Sbjct: 52 IARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAA 111
Query: 782 QQGRVLIIDLLL 793
++G + +++ L+
Sbjct: 112 KEGHLRVVEFLV 123
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 426 GETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGAS- 484
G +H AARA D ++ LL A V+ E PLH+A++ G+ + L++H AS
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129
Query: 485 VDAPTKDGYTALHISAKEGQDEVASILTESGAS 517
V G TA ++ G++EV S++ +GA
Sbjct: 130 VGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 130 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 189
T L V K G + L+ +GAN + K R G +H AAR+G + + L+E A +
Sbjct: 40 TALQV-MKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNI 98
Query: 190 KTKNGLAPLHMASQGDHEAATRVLIYHGA 218
+ G PLH+A++ H L+ H A
Sbjct: 99 EDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 57/126 (45%), Gaps = 9/126 (7%)
Query: 334 GLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASV 393
G T L V +G IA LL GA PD G +H AARA D ++ LL A V
Sbjct: 38 GRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 394 DARAREDQTPLHVAS-----RLRRF---SSASQSALTRVRGETPLHLAARANQTDIVRIL 445
+ E PLH+A+ R+ F +AS +G+T LA + ++V ++
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Query: 446 LRNGAS 451
NGA
Sbjct: 157 QANGAG 162
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%)
Query: 110 VVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAA 169
+ R LL +G N L +H A + G + ++ L+ A++ + +G PLH AA
Sbjct: 52 IARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAA 111
Query: 170 RSGHDNVIDILIEKGAA 186
+ GH V++ L++ A+
Sbjct: 112 KEGHLRVVEFLVKHTAS 128
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%)
Query: 556 KVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVA 615
++A L GA+ + GF +H AA+ G + Q LL+ A V+ + G PLH+A
Sbjct: 51 EIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLA 110
Query: 616 SHYDHQNVALLLLDRGAS 633
+ H V L+ AS
Sbjct: 111 AKEGHLRVVEFLVKHTAS 128
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 77/159 (48%), Gaps = 4/159 (2%)
Query: 648 AAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNG 707
AA + ++ T+LL+ N NA++ G T L + + G+ +++ L+ GA + + G
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV-MKLGNPEIARRLLLRGANPDLKDRTG 70
Query: 708 LTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGA-NV 766
+H A+ ++ + A+++ G PLH+A+ G L +V +LV++ A NV
Sbjct: 71 FAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV 130
Query: 767 NATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNL 805
+ G T A GR ++ L+ GA TNL
Sbjct: 131 GHRNHKGDTACDLARLYGRNEVVSLMQANGA--GGATNL 167
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 10/136 (7%)
Query: 194 GLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADP 253
G L + G+ E A R+L+ GA D +H A+ G + +TLL+ +AD
Sbjct: 38 GRTALQVMKLGNPEIARRLLL-RGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 254 NARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKA-DPNARALNGFTPLHIACKKN 312
N G PLH+A K+ H+ V + L+ A + R G T +A
Sbjct: 97 NIEDNEGNLPLHLAAKE--------GHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYG 148
Query: 313 RYKVVELLLKYGASIA 328
R +VV L+ GA A
Sbjct: 149 RNEVVSLMQANGAGGA 164
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Query: 301 GFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAP 360
G T L + K ++ LL GA+ +G +H A+ G ++ LL+ A
Sbjct: 38 GRTALQV-MKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 361 DTATVRGETPLHLAARANQTDIVRILLRNGAS 392
+ G PLHLAA+ +V L+++ AS
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 54/110 (49%), Gaps = 8/110 (7%)
Query: 229 TALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLL 288
T LH+AS G + + LL +DPN + G+TPLH AC H+ V + LL
Sbjct: 12 TLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNH--------GHLKVVELLL 63
Query: 289 DRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPL 338
KA N +PLH A K +V+LLL YGAS A GL P+
Sbjct: 64 QHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPV 113
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 56/112 (50%), Gaps = 8/112 (7%)
Query: 260 GFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVEL 319
G T LHIA K S + LL +DPN + G+TPLH AC KVVEL
Sbjct: 10 GETLLHIASIKGDIPS--------VEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVEL 61
Query: 320 LLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPL 371
LL++ A + T +PLH A+ G ++I LL GA+ + + G P+
Sbjct: 62 LLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPV 113
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 51/95 (53%)
Query: 301 GFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAP 360
G T LHIA K VE LL+ G+ +G TPLH A G + + LLQ A
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Query: 361 DTATVRGETPLHLAARANQTDIVRILLRNGASVDA 395
+T + ++PLH AA+ DIV++LL GAS +A
Sbjct: 70 NTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNA 104
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 53/109 (48%)
Query: 421 LTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQ 480
T RGET LH+A+ V LL+NG+ + + TPLH A G+ + LLLQ
Sbjct: 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ 64
Query: 481 HGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPL 529
H A V+ + LH +AK G ++ +L GAS A G P+
Sbjct: 65 HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPV 113
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Query: 571 TTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDR 630
T +G T LH+A+ G + + LLQ + + + G TPLH A ++ H V LLL
Sbjct: 6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH 65
Query: 631 GASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMS 690
A + +PLH AAK +DI LL Y A NA + G P+ + E M
Sbjct: 66 KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDES---MK 122
Query: 691 SLLI 694
SLL+
Sbjct: 123 SLLL 126
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 61/125 (48%), Gaps = 17/125 (13%)
Query: 521 TTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLH 580
T +G T LH+A+ G + + LLQ +G+ G+TPLH
Sbjct: 6 TNHRGETLLHIASIKGDIPSVEYLLQ-----------------NGSDPNVKDHAGWTPLH 48
Query: 581 LAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKN 640
A +G +K+ ++LLQ A V++ G +PLH A+ H ++ LLL GAS +AV
Sbjct: 49 EACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIF 108
Query: 641 GYTPL 645
G P+
Sbjct: 109 GLRPV 113
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 53/104 (50%)
Query: 641 GYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATV 700
G T LHIA+ K + LL+ + PN + AG+TPLH + GH + LL++H A V
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Query: 701 SHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPL 744
+ +PLH A+ V++ + + GA + V G P+
Sbjct: 70 NTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPV 113
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 66/126 (52%), Gaps = 1/126 (0%)
Query: 707 GLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANV 766
G T LH+ + + + + NG++ + AG+TPLH A + G L +V L+++ A V
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Query: 767 NATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNLFCCATILVKNGAEIDPVTKLS 826
N T +PLH A++ G V I+ LLL GA NA N+F + + + + L
Sbjct: 70 NTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNA-VNIFGLRPVDYTDDESMKSLLLLP 128
Query: 827 DEHEKS 832
+++E S
Sbjct: 129 EKNESS 134
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 55/104 (52%)
Query: 95 GFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANI 154
G T L++A+ + V YLL G + + TPLH AC G + +VELL+ A +
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Query: 155 EAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPL 198
+PLH AA++GH +++ +L+ GA+ + GL P+
Sbjct: 70 NTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPV 113
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 56/125 (44%), Gaps = 26/125 (20%)
Query: 330 TTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRN 389
T G T LH+AS G + +LLQ G+ P+ G TPLH A +V +LL++
Sbjct: 6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH 65
Query: 390 GASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNG 449
A V+ T + ++PLH AA+ DIV++LL G
Sbjct: 66 KALVNT--------------------------TGYQNDSPLHDAAKNGHVDIVKLLLSYG 99
Query: 450 ASVDA 454
AS +A
Sbjct: 100 ASRNA 104
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 19/137 (13%)
Query: 492 GYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPV 551
G T LHI++ +G L ++G+ G+TPLH A +G +K+ ++LLQ A V
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Query: 552 DSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTP 611
++ G + +PLH AAK G + I ++LL A ++ G+ P
Sbjct: 70 NTTG-----------------YQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRP 112
Query: 612 LHVASHYDHQNVALLLL 628
+ D +LLLL
Sbjct: 113 VDYTD--DESMKSLLLL 127
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 51/96 (53%)
Query: 130 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 189
T LH+A G + VE L+ G++ K G TPLH A GH V+++L++ A + +
Sbjct: 12 TLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNT 71
Query: 190 KTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITV 225
+PLH A++ H ++L+ +GA + + +
Sbjct: 72 TGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNI 107
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 52/110 (47%)
Query: 608 GVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKP 667
G T LH+AS LL G+ P+ G+TPLH A + + LL++ A
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Query: 668 NAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQE 717
N +PLH +A+ GH D+ LL+ +GA+ + GL P+ E
Sbjct: 70 NTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDE 119
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 45/87 (51%)
Query: 79 KILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKW 138
+ L+ NG+ NV+ G+TPL+ A H VV LL N +PLH A K
Sbjct: 27 EYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKN 86
Query: 139 GKVAMVELLISKGANIEAKTRDGLTPL 165
G V +V+LL+S GA+ A GL P+
Sbjct: 87 GHVDIVKLLLSYGASRNAVNIFGLRPV 113
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%)
Query: 460 QTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASIT 519
+T LH+AS G+ LLQ+G+ + G+T LH + G +V +L + A +
Sbjct: 11 ETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVN 70
Query: 520 ATTKKGFTPLHLAAKYGRMKIAQMLLQKDA 549
T + +PLH AAK G + I ++LL A
Sbjct: 71 TTGYQNDSPLHDAAKNGHVDIVKLLLSYGA 100
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 47/104 (45%)
Query: 161 GLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGV 220
G T LH A+ G ++ L++ G+ K G PLH A H +L+ H A V
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Query: 221 DEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPL 264
+ + LH A+ GHV + K LL A NA + G P+
Sbjct: 70 NTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPV 113
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 52/104 (50%)
Query: 674 GFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEI 733
G T LH+++ +G L+++G+ + + G TPLH + V + + + A +
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Query: 734 DPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPL 777
+ +PLH A+ G +++V+ L+ GA+ NA G P+
Sbjct: 70 NTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPV 113
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 31/60 (51%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
G +V ++L+ + A +N +PL+ AA+ H +V+ LLS G ++ + P+
Sbjct: 54 GHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPV 113
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 73/145 (50%), Gaps = 3/145 (2%)
Query: 582 AAKYGRMKIAQMLLQKD-APVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKN 640
AA G ++ + LL ++ D+ + G T L V + +AL LL +GASP+ +
Sbjct: 9 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTS 67
Query: 641 GYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATV 700
G +P+H AA+ +D L+E+ A N G P+HL+ QEGHT + S L + +
Sbjct: 68 GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDL 126
Query: 701 SHQAKNGLTPLHLCAQEDKVNVATI 725
+ GLTPL L Q ++ I
Sbjct: 127 HRRDARGLTPLELALQRGAQDLVDI 151
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
Query: 439 TDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHI 498
T I LL+ GAS + + +P+H A+R G D +L++HGA V+ P G +H+
Sbjct: 48 TAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHL 107
Query: 499 SAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
+ +EG V S L + + +G TPL LA + G + +L
Sbjct: 108 AVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDIL 152
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 71/144 (49%), Gaps = 7/144 (4%)
Query: 308 ACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRG 367
A + + +V LL + A G T L V F G IA+ LL+ GA+P+ G
Sbjct: 10 AARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTSG 68
Query: 368 ETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSS----ASQSALTR 423
+P+H AAR D +++L+ +GA V+ P+H+A + + A++S L R
Sbjct: 69 TSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHR 128
Query: 424 --VRGETPLHLAARANQTDIVRIL 445
RG TPL LA + D+V IL
Sbjct: 129 RDARGLTPLELALQRGAQDLVDIL 152
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 58/108 (53%), Gaps = 1/108 (0%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
G +A L+ GA+ NVQ +G +P++ AA+ ++ L+ G + + P+
Sbjct: 46 GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPI 105
Query: 133 HVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 180
H+A + G A+V L ++ +++ + GLTPL A + G +++DIL
Sbjct: 106 HLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDIL 152
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
Query: 283 VAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVAS 342
+A LL + A PN + +G +P+H A + +++L+++GA + +G P+H+A
Sbjct: 50 IALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAV 109
Query: 343 FMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRIL 386
G + F L A + RG TPL LA + D+V IL
Sbjct: 110 QEGHTAVVSF-LAAESDLHRRDARGLTPLELALQRGAQDLVDIL 152
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 75/147 (51%), Gaps = 2/147 (1%)
Query: 648 AAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNG 707
AA+ + ++ L P+A ++ G T L + G T ++ L++ GA+ + Q +G
Sbjct: 10 AARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSG 68
Query: 708 LTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVN 767
+P+H A+ ++ + + +GA+++ G P+H+A G +V +L ++++
Sbjct: 69 TSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLH 127
Query: 768 ATTNLGYTPLHQASQQGRVLIIDLLLG 794
G TPL A Q+G ++D+L G
Sbjct: 128 RRDARGLTPLELALQRGAQDLVDILQG 154
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 114 LLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGH 173
LL +G + + +P+H A + G + +++L+ GA++ G P+H A + GH
Sbjct: 54 LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGH 113
Query: 174 DNVIDILIEKGAALYSKTKNGLAPLHMASQ 203
V+ L + + L+ + GL PL +A Q
Sbjct: 114 TAVVSFLAAE-SDLHRRDARGLTPLELALQ 142
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%)
Query: 138 WGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAP 197
+G A+ L+ +GA+ + G +P+H AAR+G + + +L+E GA + G P
Sbjct: 45 FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALP 104
Query: 198 LHMASQGDHEAATRVL 213
+H+A Q H A L
Sbjct: 105 IHLAVQEGHTAVVSFL 120
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 72 TGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITP 131
TG + K+LV++GA +NV G P+++A QE H VV +L ++ + +TP
Sbjct: 78 TGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTP 136
Query: 132 LHVACKWGKVAMVELL 147
L +A + G +V++L
Sbjct: 137 LELALQRGAQDLVDIL 152
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 585 YGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTP 644
+G IA LL++ A + Q +G +P+H A+ + +L++ GA + G P
Sbjct: 45 FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALP 104
Query: 645 LHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEH 696
+H+A ++ + + L + + G TPL L+ Q G D+ +L H
Sbjct: 105 IHLAVQEGHTAV-VSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 11/146 (7%)
Query: 374 AARANQTDIVRILLRNGASVDARAREDQTPLHV------ASRLRRFSSASQSALTRVRGE 427
AAR + ++ R+L R DA R +T L V A L + + G
Sbjct: 10 AARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQDTSGT 69
Query: 428 TPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDA 487
+P+H AAR D +++L+ +GA V+ P+H+A + G+ + S L A D
Sbjct: 70 SPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL---AAESDL 126
Query: 488 PTKD--GYTALHISAKEGQDEVASIL 511
+D G T L ++ + G ++ IL
Sbjct: 127 HRRDARGLTPLELALQRGAQDLVDIL 152
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 8/127 (6%)
Query: 534 KYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQM 593
++G+ + M+ A +A L + GAS G +P+H AA+ G + ++
Sbjct: 34 RFGKTALQVMMFGSTA-------IALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKV 86
Query: 594 LLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQ 653
L++ A V+ G P+H+A H V L + H G TPL +A ++
Sbjct: 87 LVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGA 145
Query: 654 MDIATTL 660
D+ L
Sbjct: 146 QDLVDIL 152
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 65/153 (42%), Gaps = 10/153 (6%)
Query: 201 ASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNG 260
A++GD + R+L D + TAL V G +A LL + A PN + +G
Sbjct: 10 AARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSG 68
Query: 261 FTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELL 320
+P+H A + + K L++ AD N G P+H+A ++ VV L
Sbjct: 69 TSPVHDAARTGFLDT--------LKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 120
Query: 321 LKYGASIAATTESGLTPLHVASFMGCMNIAIFL 353
+ + GLTPL +A G ++ L
Sbjct: 121 AAE-SDLHRRDARGLTPLELALQRGAQDLVDIL 152
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 19/142 (13%)
Query: 486 DAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLL 545
DA + G TAL + G +A L + GAS G +P+H AA+ G + +
Sbjct: 30 DALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLK--- 85
Query: 546 QKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQG 605
+L E GA + G P+HLA + G + L ++ + +
Sbjct: 86 --------------VLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS-FLAAESDLHRRD 130
Query: 606 KNGVTPLHVASHYDHQNVALLL 627
G+TPL +A Q++ +L
Sbjct: 131 ARGLTPLELALQRGAQDLVDIL 152
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 180 LIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGH 239
L+++GA+ + +G +P+H A++ +VL+ HGA V+ +H+A GH
Sbjct: 54 LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGH 113
Query: 240 VRVAKTLLDRKADPNARALNGFTPLHIACKKN 271
V + L ++D + R G TPL +A ++
Sbjct: 114 TAVV-SFLAAESDLHRRDARGLTPLELALQRG 144
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 734 DPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLL 793
D + + G T L + FG + L++ GA+ N G +P+H A++ G + + +L+
Sbjct: 30 DALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLV 88
Query: 794 GAGAQPN 800
GA N
Sbjct: 89 EHGADVN 95
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 73/145 (50%), Gaps = 3/145 (2%)
Query: 582 AAKYGRMKIAQMLLQKD-APVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKN 640
AA G ++ + LL ++ D+ + G T L V + +AL LL +GASP+ +
Sbjct: 15 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTS 73
Query: 641 GYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATV 700
G +P+H AA+ +D L+E+ A N G P+HL+ QEGHT + S L + +
Sbjct: 74 GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDL 132
Query: 701 SHQAKNGLTPLHLCAQEDKVNVATI 725
+ GLTPL L Q ++ I
Sbjct: 133 HRRDARGLTPLELALQRGAQDLVDI 157
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
Query: 439 TDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHI 498
T I LL+ GAS + + +P+H A+R G D +L++HGA V+ P G +H+
Sbjct: 54 TAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHL 113
Query: 499 SAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
+ +EG V S L + + +G TPL LA + G + +L
Sbjct: 114 AVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDIL 158
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 71/144 (49%), Gaps = 7/144 (4%)
Query: 308 ACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRG 367
A + + +V LL + A G T L V F G IA+ LL+ GA+P+ G
Sbjct: 16 AARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTSG 74
Query: 368 ETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSS----ASQSALTR 423
+P+H AAR D +++L+ +GA V+ P+H+A + + A++S L R
Sbjct: 75 TSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHR 134
Query: 424 --VRGETPLHLAARANQTDIVRIL 445
RG TPL LA + D+V IL
Sbjct: 135 RDARGLTPLELALQRGAQDLVDIL 158
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 58/108 (53%), Gaps = 1/108 (0%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
G +A L+ GA+ NVQ +G +P++ AA+ ++ L+ G + + P+
Sbjct: 52 GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPI 111
Query: 133 HVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 180
H+A + G A+V L ++ +++ + GLTPL A + G +++DIL
Sbjct: 112 HLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDIL 158
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 73/154 (47%), Gaps = 11/154 (7%)
Query: 234 ASHCGHVRVAKTLLDRK-ADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKA 292
A+ G V+ + LL R+ P+A G T L + + S+ +A LL + A
Sbjct: 15 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM----FGST-----AIALELLKQGA 65
Query: 293 DPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIF 352
PN + +G +P+H A + +++L+++GA + +G P+H+A G + F
Sbjct: 66 SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSF 125
Query: 353 LLQAGAAPDTATVRGETPLHLAARANQTDIVRIL 386
L A + RG TPL LA + D+V IL
Sbjct: 126 -LAAESDLHRRDARGLTPLELALQRGAQDLVDIL 158
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 76/152 (50%), Gaps = 2/152 (1%)
Query: 648 AAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNG 707
AA+ + ++ L P+A ++ G T L + G T ++ L++ GA+ + Q +G
Sbjct: 16 AARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSG 74
Query: 708 LTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVN 767
+P+H A+ ++ + + +GA+++ G P+H+A G +V +L ++++
Sbjct: 75 TSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLH 133
Query: 768 ATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP 799
G TPL A Q+G ++D+L G P
Sbjct: 134 RRDARGLTPLELALQRGAQDLVDILQGHMVAP 165
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 114 LLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGH 173
LL +G + + +P+H A + G + +++L+ GA++ G P+H A + GH
Sbjct: 60 LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGH 119
Query: 174 DNVIDILIEKGAALYSKTKNGLAPLHMASQ 203
V+ L + + L+ + GL PL +A Q
Sbjct: 120 TAVVSFLAAE-SDLHRRDARGLTPLELALQ 148
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%)
Query: 138 WGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAP 197
+G A+ L+ +GA+ + G +P+H AAR+G + + +L+E GA + G P
Sbjct: 51 FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALP 110
Query: 198 LHMASQGDHEAATRVL 213
+H+A Q H A L
Sbjct: 111 IHLAVQEGHTAVVSFL 126
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 72 TGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITP 131
TG + K+LV++GA +NV G P+++A QE H VV +L ++ + +TP
Sbjct: 84 TGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTP 142
Query: 132 LHVACKWGKVAMVELL 147
L +A + G +V++L
Sbjct: 143 LELALQRGAQDLVDIL 158
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 11/146 (7%)
Query: 374 AARANQTDIVRILLRNGASVDARAREDQTPLHV------ASRLRRFSSASQSALTRVRGE 427
AAR + ++ R+L R DA R +T L V A L + + G
Sbjct: 16 AARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQDTSGT 75
Query: 428 TPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDA 487
+P+H AAR D +++L+ +GA V+ P+H+A + G+ + S L A D
Sbjct: 76 SPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL---AAESDL 132
Query: 488 PTKD--GYTALHISAKEGQDEVASIL 511
+D G T L ++ + G ++ IL
Sbjct: 133 HRRDARGLTPLELALQRGAQDLVDIL 158
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 8/134 (5%)
Query: 534 KYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQM 593
++G+ + M+ A +A L + GAS G +P+H AA+ G + ++
Sbjct: 40 RFGKTALQVMMFGSTA-------IALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKV 92
Query: 594 LLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQ 653
L++ A V+ G P+H+A H V L + H G TPL +A ++
Sbjct: 93 LVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGA 151
Query: 654 MDIATTLLEYNAKP 667
D+ L + P
Sbjct: 152 QDLVDILQGHMVAP 165
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 67/160 (41%), Gaps = 10/160 (6%)
Query: 201 ASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNG 260
A++GD + R+L D + TAL V G +A LL + A PN + +G
Sbjct: 16 AARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSG 74
Query: 261 FTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELL 320
+P+H A + + K L++ AD N G P+H+A ++ VV L
Sbjct: 75 TSPVHDAARTGFLDT--------LKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 126
Query: 321 LKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAP 360
+ + GLTPL +A G ++ L AP
Sbjct: 127 AAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGHMVAP 165
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 19/142 (13%)
Query: 486 DAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLL 545
DA + G TAL + G +A L + GAS G +P+H AA+ G + +
Sbjct: 36 DALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLK--- 91
Query: 546 QKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQG 605
+L E GA + G P+HLA + G + L ++ + +
Sbjct: 92 --------------VLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS-FLAAESDLHRRD 136
Query: 606 KNGVTPLHVASHYDHQNVALLL 627
G+TPL +A Q++ +L
Sbjct: 137 ARGLTPLELALQRGAQDLVDIL 158
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 180 LIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGH 239
L+++GA+ + +G +P+H A++ +VL+ HGA V+ +H+A GH
Sbjct: 60 LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGH 119
Query: 240 VRVAKTLLDRKADPNARALNGFTPLHIACKKN 271
V + L ++D + R G TPL +A ++
Sbjct: 120 TAVV-SFLAAESDLHRRDARGLTPLELALQRG 150
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 734 DPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLL 793
D + + G T L + FG + L++ GA+ N G +P+H A++ G + + +L+
Sbjct: 36 DALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLV 94
Query: 794 GAGAQPN 800
GA N
Sbjct: 95 EHGADVN 101
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
Query: 623 VALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSA 682
+A LL RGA+P + G+ +H AA+ +D TLLE A N E G PLHL+A
Sbjct: 52 IARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAA 111
Query: 683 QEGHTDMSSLLIEHGAT-VSHQAKNGLTPLHLCAQEDKVNVATITMFNGA 731
+EGH + L++H A+ V H+ G T L + V ++ NGA
Sbjct: 112 KEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 17/135 (12%)
Query: 460 QTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASIT 519
+T L V +LGN +IA LL GA+ D + G+ +H +A+ G + L E+ A +
Sbjct: 39 RTALQVM-KLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVN 97
Query: 520 ATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPL 579
+G PLHLAAK G +++ + L++ A +++ KG T
Sbjct: 98 IEDNEGNLPLHLAAKEGHLRVVEFLVKHTA----------------SNVGHRNHKGDTAC 141
Query: 580 HLAAKYGRMKIAQML 594
LA YGR ++ ++
Sbjct: 142 DLARLYGRNEVVSLM 156
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 722 VATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQAS 781
+A + GA D + GF +H A+ G L+ ++ L+EN A+VN N G PLH A+
Sbjct: 52 IARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAA 111
Query: 782 QQGRVLIIDLLL 793
++G + +++ L+
Sbjct: 112 KEGHLRVVEFLV 123
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 426 GETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGAS- 484
G +H AARA D ++ LL N A V+ E PLH+A++ G+ + L++H AS
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129
Query: 485 VDAPTKDGYTALHISAKEGQDEVASILTESGAS 517
V G TA ++ G++EV S++ +GA
Sbjct: 130 VGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 58/126 (46%), Gaps = 9/126 (7%)
Query: 334 GLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASV 393
G T L V +G IA LL GA PD G +H AARA D ++ LL N A V
Sbjct: 38 GRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADV 96
Query: 394 DARAREDQTPLHVAS-----RLRRF---SSASQSALTRVRGETPLHLAARANQTDIVRIL 445
+ E PLH+A+ R+ F +AS +G+T LA + ++V ++
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Query: 446 LRNGAS 451
NGA
Sbjct: 157 QANGAG 162
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 130 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 189
T L V K G + L+ +GAN + K R G +H AAR+G + + L+E A +
Sbjct: 40 TALQV-MKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNI 98
Query: 190 KTKNGLAPLHMASQGDHEAATRVLIYHGA 218
+ G PLH+A++ H L+ H A
Sbjct: 99 EDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
Query: 283 VAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVAS 342
+A+ LL R A+P+ + GF +H A + ++ LL+ A + G PLH+A+
Sbjct: 52 IARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAA 111
Query: 343 FMGCMNIAIFLLQAGAAP-DTATVRGETPLHLAARANQTDIVRILLRNGAS 392
G + + FL++ A+ +G+T LA + ++V ++ NGA
Sbjct: 112 KEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%)
Query: 110 VVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAA 169
+ R LL +G N L +H A + G + ++ L+ A++ + +G PLH AA
Sbjct: 52 IARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAA 111
Query: 170 RSGHDNVIDILIEKGAA 186
+ GH V++ L++ A+
Sbjct: 112 KEGHLRVVEFLVKHTAS 128
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 4/159 (2%)
Query: 648 AAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNG 707
AA + ++ T+LL+ N NA++ G T L + + G+ +++ L+ GA + + G
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV-MKLGNPEIARRLLLRGANPDLKDRTG 70
Query: 708 LTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGA-NV 766
+H A+ ++ + N A+++ G PLH+A+ G L +V +LV++ A NV
Sbjct: 71 FAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV 130
Query: 767 NATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNL 805
+ G T A GR ++ L+ GA TNL
Sbjct: 131 GHRNHKGDTACDLARLYGRNEVVSLMQANGA--GGATNL 167
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%)
Query: 556 KVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVA 615
++A L GA+ + GF +H AA+ G + Q LL+ A V+ + G PLH+A
Sbjct: 51 EIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLA 110
Query: 616 SHYDHQNVALLLLDRGAS 633
+ H V L+ AS
Sbjct: 111 AKEGHLRVVEFLVKHTAS 128
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 10/136 (7%)
Query: 194 GLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADP 253
G L + G+ E A R+L+ GA D +H A+ G + +TLL+ +AD
Sbjct: 38 GRTALQVMKLGNPEIARRLLL-RGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADV 96
Query: 254 NARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKA-DPNARALNGFTPLHIACKKN 312
N G PLH+A K+ H+ V + L+ A + R G T +A
Sbjct: 97 NIEDNEGNLPLHLAAKE--------GHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYG 148
Query: 313 RYKVVELLLKYGASIA 328
R +VV L+ GA A
Sbjct: 149 RNEVVSLMQANGAGGA 164
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Query: 301 GFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAP 360
G T L + K ++ LL GA+ +G +H A+ G ++ LL+ A
Sbjct: 38 GRTALQV-MKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADV 96
Query: 361 DTATVRGETPLHLAARANQTDIVRILLRNGAS 392
+ G PLHLAA+ +V L+++ AS
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
Query: 623 VALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSA 682
+A LL RGA+P + G +H AA+ +D TLLE+ A N E G PLHL+A
Sbjct: 52 IARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAA 111
Query: 683 QEGHTDMSSLLIEHGAT-VSHQAKNGLTPLHLCAQEDKVNVATITMFNGA 731
+EGH + L++H A+ V H+ G T L + V ++ NGA
Sbjct: 112 KEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 17/135 (12%)
Query: 460 QTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASIT 519
+T L V +LGN +IA LL GA+ D + G +H +A+ G + L E A +
Sbjct: 39 RTALQVM-KLGNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVN 97
Query: 520 ATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPL 579
+G PLHLAAK G +++ + L++ A +++ KG T
Sbjct: 98 IEDNEGNLPLHLAAKEGHLRVVEFLVKHTA----------------SNVGHRNHKGDTAC 141
Query: 580 HLAAKYGRMKIAQML 594
LA YGR ++ ++
Sbjct: 142 DLARLYGRNEVVSLM 156
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 426 GETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGAS- 484
G +H AARA D ++ LL A V+ E PLH+A++ G+ + L++H AS
Sbjct: 70 GNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129
Query: 485 VDAPTKDGYTALHISAKEGQDEVASILTESGAS 517
V G TA ++ G++EV S++ +GA
Sbjct: 130 VGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 57/126 (45%), Gaps = 9/126 (7%)
Query: 334 GLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASV 393
G T L V +G IA LL GA PD G +H AARA D ++ LL A V
Sbjct: 38 GRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 394 DARAREDQTPLHVAS-----RLRRF---SSASQSALTRVRGETPLHLAARANQTDIVRIL 445
+ E PLH+A+ R+ F +AS +G+T LA + ++V ++
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Query: 446 LRNGAS 451
NGA
Sbjct: 157 QANGAG 162
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
Query: 283 VAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVAS 342
+A+ LL R A+P+ + G +H A + ++ LL++ A + G PLH+A+
Sbjct: 52 IARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAA 111
Query: 343 FMGCMNIAIFLLQAGAAP-DTATVRGETPLHLAARANQTDIVRILLRNGAS 392
G + + FL++ A+ +G+T LA + ++V ++ NGA
Sbjct: 112 KEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 130 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 189
T L V K G + L+ +GAN + K R G +H AAR+G + + L+E A +
Sbjct: 40 TALQV-MKLGNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNI 98
Query: 190 KTKNGLAPLHMASQGDHEAATRVLIYHGA 218
+ G PLH+A++ H L+ H A
Sbjct: 99 EDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 40/72 (55%)
Query: 722 VATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQAS 781
+A + GA D + G +H A+ G L+ ++ L+E A+VN N G PLH A+
Sbjct: 52 IARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAA 111
Query: 782 QQGRVLIIDLLL 793
++G + +++ L+
Sbjct: 112 KEGHLRVVEFLV 123
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%)
Query: 110 VVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAA 169
+ R LL +G N L +H A + G + ++ L+ A++ + +G PLH AA
Sbjct: 52 IARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAA 111
Query: 170 RSGHDNVIDILIEKGAA 186
+ GH V++ L++ A+
Sbjct: 112 KEGHLRVVEFLVKHTAS 128
Score = 36.6 bits (83), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 77/159 (48%), Gaps = 4/159 (2%)
Query: 648 AAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNG 707
AA + ++ T+LL+ N NA++ G T L + + G+ +++ L+ GA + + G
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV-MKLGNPEIARRLLLRGANPDLKDRTG 70
Query: 708 LTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGA-NV 766
+H A+ ++ + A+++ G PLH+A+ G L +V +LV++ A NV
Sbjct: 71 NAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV 130
Query: 767 NATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNL 805
+ G T A GR ++ L+ GA TNL
Sbjct: 131 GHRNHKGDTACDLARLYGRNEVVSLMQANGA--GGATNL 167
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 10/136 (7%)
Query: 194 GLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADP 253
G L + G+ E A R+L+ GA D +H A+ G + +TLL+ +AD
Sbjct: 38 GRTALQVMKLGNPEIARRLLL-RGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 254 NARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKA-DPNARALNGFTPLHIACKKN 312
N G PLH+A K+ H+ V + L+ A + R G T +A
Sbjct: 97 NIEDNEGNLPLHLAAKE--------GHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYG 148
Query: 313 RYKVVELLLKYGASIA 328
R +VV L+ GA A
Sbjct: 149 RNEVVSLMQANGAGGA 164
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Query: 301 GFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAP 360
G T L + K ++ LL GA+ +G +H A+ G ++ LL+ A
Sbjct: 38 GRTALQV-MKLGNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 361 DTATVRGETPLHLAARANQTDIVRILLRNGAS 392
+ G PLHLAA+ +V L+++ AS
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 64.3 bits (155), Expect = 3e-10, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 65/123 (52%)
Query: 424 VRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGA 483
+ G T L A + N+ I LL G++V+ + +TPL + G +++ LL+HGA
Sbjct: 66 IEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGA 125
Query: 484 SVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQM 543
+V+ +G T L +++K G+ E+ L E GA I+A G T A +GR ++ ++
Sbjct: 126 NVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKI 185
Query: 544 LLQ 546
+
Sbjct: 186 FTE 188
Score = 63.9 bits (154), Expect = 4e-10, Method: Composition-based stats.
Identities = 43/136 (31%), Positives = 69/136 (50%)
Query: 127 HNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAA 186
+N TPL VAC G ++ L+ +E K +G T L A ++ + + L+ KG+
Sbjct: 34 YNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN 93
Query: 187 LYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTL 246
+ +K +G PL + + + L+ HGA V++ ++ T L VAS G + K L
Sbjct: 94 VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKL 153
Query: 247 LDRKADPNARALNGFT 262
L+ AD +AR L G T
Sbjct: 154 LELGADISARDLTGLT 169
Score = 63.5 bits (153), Expect = 5e-10, Method: Composition-based stats.
Identities = 41/117 (35%), Positives = 62/117 (52%), Gaps = 3/117 (2%)
Query: 297 RALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQA 356
+ + G T L A K NR + E LL G+++ SG TPL + G ++ FLL+
Sbjct: 64 KDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEH 123
Query: 357 GAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRF 413
GA + + GETPL +A++ +++IV+ LL GA + AR D T L + R F
Sbjct: 124 GANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISAR---DLTGLTAEASARIF 177
Score = 60.8 bits (146), Expect = 3e-09, Method: Composition-based stats.
Identities = 45/152 (29%), Positives = 70/152 (46%)
Query: 610 TPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNA 669
TPL VA +N L++ G T L A K N++ IA LL + N
Sbjct: 37 TPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT 96
Query: 670 ESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFN 729
+ +G TPL S G+++MS L+EHGA V+ + G TPL + ++ + + +
Sbjct: 97 KDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLEL 156
Query: 730 GAEIDPVTKAGFTPLHIASHFGQLNMVRYLVE 761
GA+I G T A FG+ +++ E
Sbjct: 157 GADISARDLTGLTAEASARIFGRQEVIKIFTE 188
Score = 60.8 bits (146), Expect = 3e-09, Method: Composition-based stats.
Identities = 38/123 (30%), Positives = 58/123 (47%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
G E LV+N + + + G T L A + N G+ LLSKG N TPL
Sbjct: 46 GMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPL 105
Query: 133 HVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTK 192
+ +G M L+ GAN+ + +G TPL A++ G ++ L+E GA + ++
Sbjct: 106 MWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDL 165
Query: 193 NGL 195
GL
Sbjct: 166 TGL 168
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 48/169 (28%), Positives = 75/169 (44%), Gaps = 17/169 (10%)
Query: 428 TPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDA 487
TPL +A + + L+ N ++ + E T L A + IA LL G++V+
Sbjct: 37 TPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT 96
Query: 488 PTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQK 547
G T L S G E++ L E GA++ +G TPL +A+KYGR +I + LL
Sbjct: 97 KDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLL-- 154
Query: 548 DAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQ 596
E GA I+A G T A +GR ++ ++ +
Sbjct: 155 ---------------ELGADISARDLTGLTAEASARIFGRQEVIKIFTE 188
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 45/169 (26%), Positives = 78/169 (46%), Gaps = 17/169 (10%)
Query: 455 RAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTES 514
R ++TPL VA LG + L+++ ++ +G TAL + K + +A L
Sbjct: 31 RDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSK 90
Query: 515 GASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKK 574
G+++ G TPL + +G +++ LL E GA++ +
Sbjct: 91 GSNVNTKDFSGKTPLMWSIIFGYSEMSYFLL-----------------EHGANVNDRNLE 133
Query: 575 GFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNV 623
G TPL +A+KYGR +I + LL+ A + ++ G+T A + Q V
Sbjct: 134 GETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEV 182
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 39/126 (30%), Positives = 63/126 (50%)
Query: 676 TPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDP 735
TPL ++ G + L+E+ + + G T L + +++ +A + G+ ++
Sbjct: 37 TPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT 96
Query: 736 VTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGA 795
+G TPL + FG M +L+E+GANVN G TPL AS+ GR I+ LL
Sbjct: 97 KDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLEL 156
Query: 796 GAQPNA 801
GA +A
Sbjct: 157 GADISA 162
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 34/106 (32%), Positives = 52/106 (49%)
Query: 77 VAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVAC 136
+A+ L+ G+ +N + +G TPL + + + +LL G N TPL VA
Sbjct: 83 IAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVAS 142
Query: 137 KWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIE 182
K+G+ +V+ L+ GA+I A+ GLT A G VI I E
Sbjct: 143 KYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTE 188
Score = 53.1 bits (126), Expect = 6e-07, Method: Composition-based stats.
Identities = 34/103 (33%), Positives = 55/103 (53%)
Query: 574 KGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGAS 633
+G T L A K R+ IA+ LL K + V+++ +G TPL + + + ++ LL+ GA+
Sbjct: 67 EGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGAN 126
Query: 634 PHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFT 676
+ G TPL +A+K + +I LLE A +A G T
Sbjct: 127 VNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLT 169
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 47/158 (29%), Positives = 69/158 (43%), Gaps = 8/158 (5%)
Query: 163 TPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDE 222
TPL A G +N ID L+E L K G L A + + L+ G+ V+
Sbjct: 37 TPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT 96
Query: 223 ITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVW 282
T L + G+ ++ LL+ A+ N R L G TPL +A K R +
Sbjct: 97 KDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSE-------- 148
Query: 283 VAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELL 320
+ K LL+ AD +AR L G T A R +V+++
Sbjct: 149 IVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIF 186
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 44/149 (29%), Positives = 72/149 (48%), Gaps = 8/149 (5%)
Query: 197 PLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNAR 256
PL +A E A L+ + +++ ++ TAL A + +A+ LL + ++ N +
Sbjct: 38 PLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTK 97
Query: 257 ALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKV 316
+G TPL + + S+ LL+ A+ N R L G TPL +A K R ++
Sbjct: 98 DFSGKTPLMWSIIFGYSEMSY--------FLLEHGANVNDRNLEGETPLIVASKYGRSEI 149
Query: 317 VELLLKYGASIAATTESGLTPLHVASFMG 345
V+ LL+ GA I+A +GLT A G
Sbjct: 150 VKKLLELGADISARDLTGLTAEASARIFG 178
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 43/156 (27%), Positives = 65/156 (41%), Gaps = 19/156 (12%)
Query: 490 KDGY--TALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQK 547
+D Y T L ++ G + L E+ + +G T L A K R+ IA+ LL K
Sbjct: 31 RDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSK 90
Query: 548 DAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKN 607
G+++ G TPL + +G +++ LL+ A V+ +
Sbjct: 91 -----------------GSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLE 133
Query: 608 GVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYT 643
G TPL VAS Y + LL+ GA A G T
Sbjct: 134 GETPLIVASKYGRSEIVKKLLELGADISARDLTGLT 169
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 65/133 (48%)
Query: 577 TPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHA 636
TPL +A G L++ ++ + G T L A + +A LL +G++ +
Sbjct: 37 TPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT 96
Query: 637 VAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEH 696
+G TPL + +++ LLE+ A N + G TPL ++++ G +++ L+E
Sbjct: 97 KDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLEL 156
Query: 697 GATVSHQAKNGLT 709
GA +S + GLT
Sbjct: 157 GADISARDLTGLT 169
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 42/153 (27%), Positives = 65/153 (42%), Gaps = 26/153 (16%)
Query: 303 TPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDT 362
TPL +AC ++ L++ + G T L A + IA LL G+ +T
Sbjct: 37 TPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT 96
Query: 363 ATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALT 422
G+TPL + +++ LL +GA+V+ R E +TPL VAS+ R
Sbjct: 97 KDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGR---------- 146
Query: 423 RVRGETPLHLAARANQTDIVRILLRNGASVDAR 455
++IV+ LL GA + AR
Sbjct: 147 ----------------SEIVKKLLELGADISAR 163
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 57/123 (46%), Gaps = 1/123 (0%)
Query: 130 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 189
T L A K ++ + E L+SKG+N+ K G TPL + G+ + L+E GA +
Sbjct: 70 TALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVND 129
Query: 190 KTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLD- 248
+ G PL +AS+ + L+ GA + + LTA A G V K +
Sbjct: 130 RNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEV 189
Query: 249 RKA 251
R+A
Sbjct: 190 RRA 192
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 42/158 (26%), Positives = 68/158 (43%), Gaps = 8/158 (5%)
Query: 229 TALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLL 288
T L VA G L++ + + G T L A K NR + +A+ LL
Sbjct: 37 TPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNR--------LGIAEKLL 88
Query: 289 DRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMN 348
+ ++ N + +G TPL + ++ LL++GA++ G TPL VAS G
Sbjct: 89 SKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSE 148
Query: 349 IAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRIL 386
I LL+ GA + G T A + ++++I
Sbjct: 149 IVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIF 186
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 63/135 (46%)
Query: 580 HLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAK 639
LAA+ ++ + L + D V+ + G TPL AS + LL+ GA PH +AK
Sbjct: 8 QLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAK 67
Query: 640 NGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGAT 699
+ L +A+ DI LLE + N G TPL + + H L+ GA
Sbjct: 68 ERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGAD 127
Query: 700 VSHQAKNGLTPLHLC 714
++ +A +G TP+ L
Sbjct: 128 LTTEADSGYTPMDLA 142
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 58/120 (48%)
Query: 425 RGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGAS 484
RG TPL A+ + + VR LL GA A+E ++ L +AS G DI LLL+
Sbjct: 35 RGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVD 94
Query: 485 VDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
++ +G T L + + + L GA +T G+TP+ LA G K+ Q++
Sbjct: 95 INIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVI 154
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 64/124 (51%), Gaps = 1/124 (0%)
Query: 639 KNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGA 698
+ G+TPL A+ +++ LLE+ A P+ +K + L L++ G+TD+ LL+E
Sbjct: 34 ERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDV 93
Query: 699 TVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRY 758
++ NG TPL + + V + GA++ +G+TP+ +A G V+
Sbjct: 94 DINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALG-YRKVQQ 152
Query: 759 LVEN 762
++EN
Sbjct: 153 VIEN 156
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 18/155 (11%)
Query: 495 ALHISAKEGQ-DEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDS 553
++H A +G+ D++ L + + ++GFTPL A+ +G ++ + LL
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLL-------- 56
Query: 554 QGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLH 613
E GA K+ + L LA+ G I +LL++D ++ NG TPL
Sbjct: 57 ---------EWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLL 107
Query: 614 VASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIA 648
A +H LL RGA A +GYTP+ +A
Sbjct: 108 YAVRGNHVKCVEALLARGADLTTEADSGYTPMDLA 142
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 62/129 (48%)
Query: 568 ITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLL 627
+ ++GFTPL A+ +G ++ + LL+ A K + L +AS + ++ LL
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLL 88
Query: 628 LDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHT 687
L+R + NG TPL A + N + LL A E+ +G+TP+ L+ G+
Sbjct: 89 LERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYR 148
Query: 688 DMSSLLIEH 696
+ ++ H
Sbjct: 149 KVQQVIENH 157
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 1/140 (0%)
Query: 63 SLSNTKFEATGQ-EEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQ 121
SLS + A G+ +++ + L +N GFTPL A+ VR+LL G +
Sbjct: 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62
Query: 122 TLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILI 181
+ + + L +A G +V LL+ + +I +G TPL A R H ++ L+
Sbjct: 63 HILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALL 122
Query: 182 EKGAALYSKTKNGLAPLHMA 201
+GA L ++ +G P+ +A
Sbjct: 123 ARGADLTTEADSGYTPMDLA 142
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 76/174 (43%), Gaps = 12/174 (6%)
Query: 165 LHCAARSGHDNVIDILIEKGAALYSK-TKNGLAPLHMASQGDHEAATRVLIYHGAGVDEI 223
+H A G + + + KG L +K + G PL AS R L+ GA +
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 224 TVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWV 283
+ +AL +AS G+ + LL+R D N NG TPL A + NHV
Sbjct: 66 AKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRG--------NHVKC 117
Query: 284 AKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTP 337
+ LL R AD A +G+TP+ +A KV +++ + I +S L P
Sbjct: 118 VEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH---ILKLFQSNLVP 168
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 55/122 (45%), Gaps = 8/122 (6%)
Query: 228 LTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTL 287
T L AS G + + LL+ ADP+ A + L +A S + + L
Sbjct: 37 FTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLA--------STGGYTDIVGLL 88
Query: 288 LDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCM 347
L+R D N NG TPL A + N K VE LL GA + +SG TP+ +A +G
Sbjct: 89 LERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYR 148
Query: 348 NI 349
+
Sbjct: 149 KV 150
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 57/150 (38%), Gaps = 26/150 (17%)
Query: 332 ESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGA 391
E G TPL AS G + FLL+ GA P E+ L LA+ TDIV +LL
Sbjct: 34 ERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDV 93
Query: 392 SVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGAS 451
++ + G TPL A R N V LL GA
Sbjct: 94 DIN--------------------------IYDWNGGTPLLYAVRGNHVKCVEALLARGAD 127
Query: 452 VDARAREDQTPLHVASRLGNGDIASLLLQH 481
+ A TP+ +A LG + ++ H
Sbjct: 128 LTTEADSGYTPMDLAVALGYRKVQQVIENH 157
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 70/166 (42%), Gaps = 18/166 (10%)
Query: 430 LHLAARANQTDIVRILLRNGASVDARAREDQ-TPLHVASRLGNGDIASLLLQHGASVDAP 488
+H A + D ++ LR G ++ + E TPL AS G + LL+ GA
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 489 TKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKD 548
K+ +AL +++ G ++ +L E I G TPL A + +K + LL +
Sbjct: 66 AKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLAR- 124
Query: 549 APVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 594
GA +T G+TP+ LA G K+ Q++
Sbjct: 125 ----------------GADLTTEADSGYTPMDLAVALGYRKVQQVI 154
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 56/129 (43%), Gaps = 14/129 (10%)
Query: 290 RKAD-----PNARALNGFTPLHIACKKNRYKVVELLLKYGAS---IAATTESGLTPLHVA 341
RK D P+ R GFTPL A + V LL++GA +A ES L+ +A
Sbjct: 23 RKGDNLVNKPDER---GFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALS---LA 76
Query: 342 SFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQ 401
S G +I LL+ + G TPL A R N V LL GA + A
Sbjct: 77 STGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGY 136
Query: 402 TPLHVASRL 410
TP+ +A L
Sbjct: 137 TPMDLAVAL 145
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 6/149 (4%)
Query: 101 MAAQENHDGVVRYLLSKGGNQT-LATEHNITPLHVACKWGKVAMVELLISKGAN--IEAK 157
+AAQ D + +L KG N E TPL A +G++ V L+ GA+ I AK
Sbjct: 9 LAAQGELDQLKEHL-RKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAK 67
Query: 158 TRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHG 217
R+ + L A+ G+ +++ +L+E+ + NG PL A +G+H L+ G
Sbjct: 68 ERE--SALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARG 125
Query: 218 AGVDEITVDYLTALHVASHCGHVRVAKTL 246
A + T + +A G+ +V + +
Sbjct: 126 ADLTTEADSGYTPMDLAVALGYRKVQQVI 154
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 50/117 (42%)
Query: 668 NAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITM 727
N + GFTPL ++ G + L+E GA AK + L L + ++ + +
Sbjct: 30 NKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLL 89
Query: 728 FNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQG 784
+I+ G TPL A + V L+ GA++ + GYTP+ A G
Sbjct: 90 ERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALG 146
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 31/54 (57%)
Query: 740 GFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLL 793
GFTPL AS FG++ VR+L+E GA+ + + L AS G I+ LLL
Sbjct: 36 GFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLL 89
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 1/121 (0%)
Query: 678 LHLSAQEGHTDMSSLLIEHGAT-VSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPV 736
+H A +G D + G V+ + G TPL + ++ + GA+ +
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 737 TKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAG 796
K + L +AS G ++V L+E ++N G TPL A + V ++ LL G
Sbjct: 66 AKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARG 125
Query: 797 A 797
A
Sbjct: 126 A 126
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 751 GQLNMVRYLVENGAN-VNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNLFCCA 809
G+L+ ++ + G N VN G+TPL AS G + + LL GA P+ A
Sbjct: 13 GELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESA 72
Query: 810 TILVKNGAEIDPVTKLSDEHEKSIDL 835
L G D V L E+ +D+
Sbjct: 73 LSLASTGGYTDIVGLLL---ERDVDI 95
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 100/235 (42%), Gaps = 25/235 (10%)
Query: 284 AKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASF 343
AK + AD NA + TPL +A R ++V L K GA +S + LH A+
Sbjct: 149 AKECIAAGADVNAXDCDENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQAAA 208
Query: 344 MGCMNIAIFLLQAGAAP---DTATVRGETPLHLAARANQTDIV---RILLRNGASVDARA 397
++ L + + G T L + A D V ++L+ GA VD
Sbjct: 209 NRDFGXXVYXLNSTKLKGDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVD--- 265
Query: 398 REDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILL-RNGASVDARA 456
+ A++ + +G T LH AA+ + IV+ L+ G++ D +
Sbjct: 266 ---------------YDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQD 310
Query: 457 REDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASIL 511
+ +TP+ +A++ G ++ L+Q GASV+A +TA ++ + I
Sbjct: 311 EDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIF 365
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 100/219 (45%), Gaps = 35/219 (15%)
Query: 428 TPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGAS--- 484
TPL LA A + +V L + GA + +++ LH A+ N D + ++
Sbjct: 168 TPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQAA--ANRDFGXXVYXLNSTKLK 225
Query: 485 --VDAPTKDGYTALHISA-KEGQDEVAS--ILTESGASIT--------ATTKKGFTPLHL 531
++ ++G TAL I A EG+D+VAS +L E GA + + KG T LH
Sbjct: 226 GDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHY 285
Query: 532 AAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIA 591
AA+ I + L+ E G++ + G TP+ LAA+ GR+++
Sbjct: 286 AAQVSNXPIVKYLV----------------GEKGSNKDKQDEDGKTPIXLAAQEGRIEVV 329
Query: 592 QMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDR 630
L+Q+ A V++ T +A +H N+ + + DR
Sbjct: 330 XYLIQQGASVEAVDATDHTARQLAQANNHHNI-VDIFDR 367
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 58/107 (54%), Gaps = 1/107 (0%)
Query: 75 EEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLL-SKGGNQTLATEHNITPLH 133
E+ AK+ D A + + G T L+ AAQ ++ +V+YL+ KG N+ E TP+
Sbjct: 259 EKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIX 318
Query: 134 VACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 180
+A + G++ +V LI +GA++EA T A + H N++DI
Sbjct: 319 LAAQEGRIEVVXYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIF 365
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 83/184 (45%), Gaps = 19/184 (10%)
Query: 631 GASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMS 690
GA +A + TPL +A + + L + A P +K+ + LH +A + D
Sbjct: 156 GADVNAXDCDENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQAA--ANRDFG 213
Query: 691 SLLIEHGAT-----VSHQAKNGLTPLHLCAQ---EDKVNVATITMFNGAEIDPVTKA--- 739
+ +T + +NG T L + A D+V A + + GA++D A
Sbjct: 214 XXVYXLNSTKLKGDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKD 273
Query: 740 -----GFTPLHIASHFGQLNMVRYLV-ENGANVNATTNLGYTPLHQASQQGRVLIIDLLL 793
G T LH A+ +V+YLV E G+N + G TP+ A+Q+GR+ ++ L+
Sbjct: 274 SEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLI 333
Query: 794 GAGA 797
GA
Sbjct: 334 QQGA 337
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 86/200 (43%), Gaps = 19/200 (9%)
Query: 610 TPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNA---K 666
TPL +A + + L GA P K+ + LH AA D + N+ K
Sbjct: 168 TPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQAAA--NRDFGXXVYXLNSTKLK 225
Query: 667 PNAES--KAGFTPLHLSA-QEGHTDMSS--LLIEHGATVSH--------QAKNGLTPLHL 713
+ E + G T L + A EG ++S LL+E GA V + + G T LH
Sbjct: 226 GDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHY 285
Query: 714 CAQ-EDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNL 772
AQ + V + G+ D + G TP+ +A+ G++ +V YL++ GA+V A
Sbjct: 286 AAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDAT 345
Query: 773 GYTPLHQASQQGRVLIIDLL 792
+T A I+D+
Sbjct: 346 DHTARQLAQANNHHNIVDIF 365
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 97/248 (39%), Gaps = 57/248 (22%)
Query: 457 REDQTPLHVASRLGNGDIASLLLQH--------GASVDAPTKDGYTALHISAKEGQDEVA 508
R ++T LH + + + + L+ H GA V+A D T L ++ + +
Sbjct: 123 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAXDCDENTPLXLAVLARRRRLV 182
Query: 509 SILTESGASITATTKKGFTPLHLAA----------------------------------- 533
+ L ++GA T K + LH AA
Sbjct: 183 AYLXKAGADPTIYNKSERSALHQAAANRDFGXXVYXLNSTKLKGDIEELDRNGXTALXIV 242
Query: 534 --KYGRMKI--AQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMK 589
GR ++ A++L++K A VD G A + KG T LH AA+
Sbjct: 243 AHNEGRDQVASAKLLVEKGAKVDYDG---------AARKDSEKYKGRTALHYAAQVSNXP 293
Query: 590 IAQMLL-QKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIA 648
I + L+ +K + D Q ++G TP+ +A+ V L+ +GAS AV +T +A
Sbjct: 294 IVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATDHTARQLA 353
Query: 649 AKKNQMDI 656
N +I
Sbjct: 354 QANNHHNI 361
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 1/106 (0%)
Query: 284 AKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLL-KYGASIAATTESGLTPLHVAS 342
AK D A ++ G T LH A + + +V+ L+ + G++ E G TP+ +A+
Sbjct: 262 AKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAA 321
Query: 343 FMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLR 388
G + + +L+Q GA+ + T LA N +IV I R
Sbjct: 322 QEGRIEVVXYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR 367
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 85/220 (38%), Gaps = 49/220 (22%)
Query: 78 AKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLH---- 133
AK + GA +N + TPL +A +V YL G + T+ + + LH
Sbjct: 149 AKECIAAGADVNAXDCDENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQAAA 208
Query: 134 ---------------------------------VACKWGK--VAMVELLISKGANIE--- 155
VA G+ VA +LL+ KGA ++
Sbjct: 209 NRDFGXXVYXLNSTKLKGDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDG 268
Query: 156 AKTRD-----GLTPLHCAARSGHDNVIDILI-EKGAALYSKTKNGLAPLHMASQGDHEAA 209
A +D G T LH AA+ + ++ L+ EKG+ + ++G P+ +A+Q
Sbjct: 269 AARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEV 328
Query: 210 TRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDR 249
LI GA V+ + TA +A H + + DR
Sbjct: 329 VXYLIQQGASVEAVDATDHTARQLAQANNHHNIV-DIFDR 367
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 18/155 (11%)
Query: 495 ALHISAKEGQ-DEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDS 553
++H A +G+ D++ L + + ++GFTPL A+ +G ++ + LL
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLL-------- 56
Query: 554 QGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLH 613
E GA K+ + L LA+ G I +LL++D ++ NG TPL
Sbjct: 57 ---------EWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLL 107
Query: 614 VASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIA 648
A H +H LL RGA A +GYTP+ +A
Sbjct: 108 YAVHGNHVKCVEALLARGADLTTEADSGYTPMDLA 142
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 62/135 (45%)
Query: 580 HLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAK 639
LAA+ ++ + L + D V+ + G TPL AS + LL+ GA PH +AK
Sbjct: 8 QLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAK 67
Query: 640 NGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGAT 699
+ L +A+ DI LLE + N G TPL + H L+ GA
Sbjct: 68 ERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGAD 127
Query: 700 VSHQAKNGLTPLHLC 714
++ +A +G TP+ L
Sbjct: 128 LTTEADSGYTPMDLA 142
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 57/120 (47%)
Query: 425 RGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGAS 484
RG TPL A+ + + VR LL GA A+E ++ L +AS G DI LLL+
Sbjct: 35 RGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVD 94
Query: 485 VDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
++ +G T L + + L GA +T G+TP+ LA G K+ Q++
Sbjct: 95 INIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVI 154
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 63/124 (50%), Gaps = 1/124 (0%)
Query: 639 KNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGA 698
+ G+TPL A+ +++ LLE+ A P+ +K + L L++ G+TD+ LL+E
Sbjct: 34 ERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDV 93
Query: 699 TVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRY 758
++ NG TPL + V + GA++ +G+TP+ +A G V+
Sbjct: 94 DINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALG-YRKVQQ 152
Query: 759 LVEN 762
++EN
Sbjct: 153 VIEN 156
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 76/174 (43%), Gaps = 12/174 (6%)
Query: 165 LHCAARSGHDNVIDILIEKGAALYSK-TKNGLAPLHMASQGDHEAATRVLIYHGAGVDEI 223
+H A G + + + KG L +K + G PL AS R L+ GA +
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 224 TVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWV 283
+ +AL +AS G+ + LL+R D N NG TPL A H NHV
Sbjct: 66 AKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAV--------HGNHVKC 117
Query: 284 AKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTP 337
+ LL R AD A +G+TP+ +A KV +++ + I +S L P
Sbjct: 118 VEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH---ILKLFQSNLVP 168
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 60/124 (48%)
Query: 573 KKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGA 632
++GFTPL A+ +G ++ + LL+ A K + L +AS + ++ LLL+R
Sbjct: 34 ERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDV 93
Query: 633 SPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSL 692
+ NG TPL A N + LL A E+ +G+TP+ L+ G+ + +
Sbjct: 94 DINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQV 153
Query: 693 LIEH 696
+ H
Sbjct: 154 IENH 157
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 54/122 (44%), Gaps = 8/122 (6%)
Query: 228 LTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTL 287
T L AS G + + LL+ ADP+ A + L +A S + + L
Sbjct: 37 FTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLA--------STGGYTDIVGLL 88
Query: 288 LDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCM 347
L+R D N NG TPL A N K VE LL GA + +SG TP+ +A +G
Sbjct: 89 LERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYR 148
Query: 348 NI 349
+
Sbjct: 149 KV 150
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 1/140 (0%)
Query: 63 SLSNTKFEATGQ-EEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQ 121
SLS + A G+ +++ + L +N GFTPL A+ VR+LL G +
Sbjct: 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62
Query: 122 TLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILI 181
+ + + L +A G +V LL+ + +I +G TPL A H ++ L+
Sbjct: 63 HILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALL 122
Query: 182 EKGAALYSKTKNGLAPLHMA 201
+GA L ++ +G P+ +A
Sbjct: 123 ARGADLTTEADSGYTPMDLA 142
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 56/150 (37%), Gaps = 26/150 (17%)
Query: 332 ESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGA 391
E G TPL AS G + FLL+ GA P E+ L LA+ TDIV +LL
Sbjct: 34 ERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDV 93
Query: 392 SVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGAS 451
++ + G TPL A N V LL GA
Sbjct: 94 DIN--------------------------IYDWNGGTPLLYAVHGNHVKCVEALLARGAD 127
Query: 452 VDARAREDQTPLHVASRLGNGDIASLLLQH 481
+ A TP+ +A LG + ++ H
Sbjct: 128 LTTEADSGYTPMDLAVALGYRKVQQVIENH 157
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 69/166 (41%), Gaps = 18/166 (10%)
Query: 430 LHLAARANQTDIVRILLRNGASVDARAREDQ-TPLHVASRLGNGDIASLLLQHGASVDAP 488
+H A + D ++ LR G ++ + E TPL AS G + LL+ GA
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 489 TKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKD 548
K+ +AL +++ G ++ +L E I G TPL A +K + LL +
Sbjct: 66 AKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLAR- 124
Query: 549 APVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 594
GA +T G+TP+ LA G K+ Q++
Sbjct: 125 ----------------GADLTTEADSGYTPMDLAVALGYRKVQQVI 154
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 3/153 (1%)
Query: 132 LHVACKWGKVAMVELLISKGANIEAKTRD-GLTPLHCAARSGHDNVIDILIEKGAALYSK 190
+H G++ ++ + KG N+ K + G TPL A+ G + L+E GA +
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 191 TKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRK 250
K + L +AS G + +L+ ++ + T L A H HV+ + LL R
Sbjct: 66 AKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARG 125
Query: 251 ADPNARALNGFTPLHIACKKNRYKSSHC--NHV 281
AD A +G+TP+ +A K NH+
Sbjct: 126 ADLTTEADSGYTPMDLAVALGYRKVQQVIENHI 158
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 55/129 (42%), Gaps = 14/129 (10%)
Query: 290 RKAD-----PNARALNGFTPLHIACKKNRYKVVELLLKYGAS---IAATTESGLTPLHVA 341
RK D P+ R GFTPL A + V LL++GA +A ES L+ +A
Sbjct: 23 RKGDNLVNKPDER---GFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALS---LA 76
Query: 342 SFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQ 401
S G +I LL+ + G TPL A N V LL GA + A
Sbjct: 77 STGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGY 136
Query: 402 TPLHVASRL 410
TP+ +A L
Sbjct: 137 TPMDLAVAL 145
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 6/149 (4%)
Query: 101 MAAQENHDGVVRYLLSKGGNQT-LATEHNITPLHVACKWGKVAMVELLISKGAN--IEAK 157
+AAQ D + +L KG N E TPL A +G++ V L+ GA+ I AK
Sbjct: 9 LAAQGELDQLKEHL-RKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAK 67
Query: 158 TRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHG 217
R+ + L A+ G+ +++ +L+E+ + NG PL A G+H L+ G
Sbjct: 68 ERE--SALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARG 125
Query: 218 AGVDEITVDYLTALHVASHCGHVRVAKTL 246
A + T + +A G+ +V + +
Sbjct: 126 ADLTTEADSGYTPMDLAVALGYRKVQQVI 154
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 51/117 (43%)
Query: 668 NAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITM 727
N + GFTPL ++ G + L+E GA AK + L L + ++ + +
Sbjct: 30 NKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLL 89
Query: 728 FNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQG 784
+I+ G TPL A H + V L+ GA++ + GYTP+ A G
Sbjct: 90 ERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALG 146
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 31/54 (57%)
Query: 740 GFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLL 793
GFTPL AS FG++ VR+L+E GA+ + + L AS G I+ LLL
Sbjct: 36 GFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLL 89
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 1/121 (0%)
Query: 678 LHLSAQEGHTDMSSLLIEHGAT-VSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPV 736
+H A +G D + G V+ + G TPL + ++ + GA+ +
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 737 TKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAG 796
K + L +AS G ++V L+E ++N G TPL A V ++ LL G
Sbjct: 66 AKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARG 125
Query: 797 A 797
A
Sbjct: 126 A 126
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 751 GQLNMVRYLVENGAN-VNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNLFCCA 809
G+L+ ++ + G N VN G+TPL AS G + + LL GA P+ A
Sbjct: 13 GELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESA 72
Query: 810 TILVKNGAEIDPVTKLSDEHEKSIDL 835
L G D V L E+ +D+
Sbjct: 73 LSLASTGGYTDIVGLLL---ERDVDI 95
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 14/128 (10%)
Query: 67 TKFEATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDG---VVRYLLSKGGNQTL 123
T TG E +A +G + F PL + + +G +V+ ++ + + +L
Sbjct: 17 TNLRKTGSERIA-----HGMRVK------FNPLALLLDSSLEGEFDLVQRIIYEVDDPSL 65
Query: 124 ATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEK 183
+ IT LH A G +V+ L+ G N+ A DG TPLHCAA + V L+E
Sbjct: 66 PNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVES 125
Query: 184 GAALYSKT 191
GAA+++ T
Sbjct: 126 GAAVFAMT 133
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 458 EDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGAS 517
E T LH A G+ +I L+Q G +V+A DG+T LH +A +V L ESGA+
Sbjct: 69 EGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAA 128
Query: 518 ITATT 522
+ A T
Sbjct: 129 VFAMT 133
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 740 GFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP 799
G T LH A G +V++LV+ G NVNA + G+TPLH A+ V + L+ +GA
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
Query: 800 NATT 803
A T
Sbjct: 130 FAMT 133
Score = 47.4 bits (111), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 488 PTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQK 547
P +G TALH + G E+ L + G ++ A G+TPLH AA +++ + L++
Sbjct: 66 PNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVES 125
Query: 548 DAPV 551
A V
Sbjct: 126 GAAV 129
Score = 47.4 bits (111), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 35/69 (50%)
Query: 332 ESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGA 391
+ G+T LH A G I FL+Q G + A G TPLH AA N + + L+ +GA
Sbjct: 68 DEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127
Query: 392 SVDARARED 400
+V A D
Sbjct: 128 AVFAMTYSD 136
Score = 46.2 bits (108), Expect = 7e-05, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 420 ALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLL 479
+L G T LH A A T+IV+ L++ G +V+A + TPLH A+ N + L+
Sbjct: 64 SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 480 QHGASVDAPTKDGYTALHISAKEGQD 505
+ GA+V A T Y+ + +A + ++
Sbjct: 124 ESGAAVFAMT---YSDMQTAADKCEE 146
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 37/67 (55%)
Query: 293 DPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIF 352
DP+ G T LH A ++V+ L+++G ++ A G TPLH A+ + + F
Sbjct: 62 DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKF 121
Query: 353 LLQAGAA 359
L+++GAA
Sbjct: 122 LVESGAA 128
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 10/117 (8%)
Query: 672 KAGFTPLHL---SAQEGHTDMSSLLIEHGATVSHQAKNGLTPLH--LCAQEDKVNVATIT 726
+ F PL L S+ EG D+ +I S G+T LH +CA ++ V +
Sbjct: 32 RVKFNPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEI-VKFLV 90
Query: 727 MFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQ 783
F G ++ G+TPLH A+ + + ++LVE+GA V A T Y+ + A+ +
Sbjct: 91 QF-GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMT---YSDMQTAADK 143
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 642 YTPLHI---AAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGA 698
+ PL + ++ + + D+ ++ P+ + G T LH + GHT++ L++ G
Sbjct: 35 FNPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGV 94
Query: 699 TVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVT 737
V+ +G TPLH A + V V + +GA + +T
Sbjct: 95 NVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMT 133
Score = 42.7 bits (99), Expect = 8e-04, Method: Composition-based stats.
Identities = 36/148 (24%), Positives = 62/148 (41%), Gaps = 12/148 (8%)
Query: 555 GKVASILTESGASITATTKKGFTPLHL---AAKYGRMKIAQMLLQKDAPVDSQGKNGVTP 611
GK ++ I + F PL L ++ G + Q ++ + G+T
Sbjct: 14 GKRTNLRKTGSERIAHGMRVKFNPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITA 73
Query: 612 LHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAES 671
LH A H + L+ G + +A +G+TPLH AA N + + L+E A A +
Sbjct: 74 LHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMT 133
Query: 672 KAGFTPLHLSA------QEGHTDMSSLL 693
++ + +A +EG+T S L
Sbjct: 134 ---YSDMQTAADKCEEMEEGYTQCSQFL 158
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 44/86 (51%)
Query: 139 GKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPL 198
G+ +V+ +I + + +G+T LH A +GH ++ L++ G + + +G PL
Sbjct: 48 GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL 107
Query: 199 HMASQGDHEAATRVLIYHGAGVDEIT 224
H A+ ++ + L+ GA V +T
Sbjct: 108 HCAASCNNVQVCKFLVESGAAVFAMT 133
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Query: 228 LTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTL 287
+TALH A GH + K L+ + NA +G+TPLH A + CN+V V K L
Sbjct: 71 ITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCA--------ASCNNVQVCKFL 122
Query: 288 LDRKA 292
++ A
Sbjct: 123 VESGA 127
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 30/67 (44%)
Query: 634 PHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLL 693
P G T LH A +I L+++ NA G+TPLH +A + + L
Sbjct: 63 PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFL 122
Query: 694 IEHGATV 700
+E GA V
Sbjct: 123 VESGAAV 129
Score = 38.5 bits (88), Expect = 0.014, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 10/85 (11%)
Query: 252 DPNARALNGFTPLHIA-CKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACK 310
DP+ G T LH A C H + K L+ + NA +G+TPLH A
Sbjct: 62 DPSLPNDEGITALHNAVC---------AGHTEIVKFLVQFGVNVNAADSDGWTPLHCAAS 112
Query: 311 KNRYKVVELLLKYGASIAATTESGL 335
N +V + L++ GA++ A T S +
Sbjct: 113 CNNVQVCKFLVESGAAVFAMTYSDM 137
Score = 38.5 bits (88), Expect = 0.018, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 41/100 (41%), Gaps = 26/100 (26%)
Query: 360 PDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQS 419
P G T LH A A T+IV+ L++ G +V+A A D
Sbjct: 63 PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA-ADSD------------------- 102
Query: 420 ALTRVRGETPLHLAARANQTDIVRILLRNGASVDARARED 459
G TPLH AA N + + L+ +GA+V A D
Sbjct: 103 ------GWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSD 136
Score = 36.2 bits (82), Expect = 0.086, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 28/58 (48%)
Query: 194 GLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKA 251
G+ LH A H + L+ G V+ D T LH A+ C +V+V K L++ A
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127
Score = 33.9 bits (76), Expect = 0.39, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 17/78 (21%)
Query: 524 KGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAA 583
+G T LH A G +I + L+Q G ++ A G+TPLH AA
Sbjct: 69 EGITALHNAVCAGHTEIVKFLVQ-----------------FGVNVNAADSDGWTPLHCAA 111
Query: 584 KYGRMKIAQMLLQKDAPV 601
+++ + L++ A V
Sbjct: 112 SCNNVQVCKFLVESGAAV 129
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 60.5 bits (145), Expect = 4e-09, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 12/128 (9%)
Query: 67 TKFEATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDG---VVRYLLSKGGNQTL 123
T TG E +A +G + L PL + + +G +V+ ++ + + +L
Sbjct: 15 TNLRKTGSERIA-----HGMRVKFNPL----PLALLLDSSLEGEFDLVQRIIYEVDDPSL 65
Query: 124 ATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEK 183
+ IT LH A G +V+ L+ G N+ A DG TPLHCAA + V L+E
Sbjct: 66 PNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVES 125
Query: 184 GAALYSKT 191
GAA+++ T
Sbjct: 126 GAAVFAMT 133
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 458 EDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGAS 517
E T LH A G+ +I L+Q G +V+A DG+T LH +A +V L ESGA+
Sbjct: 69 EGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAA 128
Query: 518 ITATT 522
+ A T
Sbjct: 129 VFAMT 133
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 740 GFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP 799
G T LH A G +V++LV+ G NVNA + G+TPLH A+ V + L+ +GA
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
Query: 800 NATT 803
A T
Sbjct: 130 FAMT 133
Score = 47.4 bits (111), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 488 PTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQK 547
P +G TALH + G E+ L + G ++ A G+TPLH AA +++ + L++
Sbjct: 66 PNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVES 125
Query: 548 DAPV 551
A V
Sbjct: 126 GAAV 129
Score = 47.4 bits (111), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 35/69 (50%)
Query: 332 ESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGA 391
+ G+T LH A G I FL+Q G + A G TPLH AA N + + L+ +GA
Sbjct: 68 DEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127
Query: 392 SVDARARED 400
+V A D
Sbjct: 128 AVFAMTYSD 136
Score = 46.2 bits (108), Expect = 7e-05, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 420 ALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLL 479
+L G T LH A A T+IV+ L++ G +V+A + TPLH A+ N + L+
Sbjct: 64 SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 480 QHGASVDAPTKDGYTALHISAKEGQD 505
+ GA+V A T Y+ + +A + ++
Sbjct: 124 ESGAAVFAMT---YSDMQTAADKCEE 146
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 37/67 (55%)
Query: 293 DPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIF 352
DP+ G T LH A ++V+ L+++G ++ A G TPLH A+ + + F
Sbjct: 62 DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKF 121
Query: 353 LLQAGAA 359
L+++GAA
Sbjct: 122 LVESGAA 128
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 642 YTPLHIA-----AKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEH 696
+ PL +A + + + D+ ++ P+ + G T LH + GHT++ L++
Sbjct: 33 FNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQF 92
Query: 697 GATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVT 737
G V+ +G TPLH A + V V + +GA + +T
Sbjct: 93 GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMT 133
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 12/119 (10%)
Query: 672 KAGFTPLHL-----SAQEGHTDMSSLLIEHGATVSHQAKNGLTPLH--LCAQEDKVNVAT 724
+ F PL L S+ EG D+ +I S G+T LH +CA ++ V
Sbjct: 30 RVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEI-VKF 88
Query: 725 ITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQ 783
+ F G ++ G+TPLH A+ + + ++LVE+GA V A T Y+ + A+ +
Sbjct: 89 LVQF-GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMT---YSDMQTAADK 143
Score = 43.1 bits (100), Expect = 7e-04, Method: Composition-based stats.
Identities = 37/150 (24%), Positives = 62/150 (41%), Gaps = 14/150 (9%)
Query: 555 GKVASILTESGASITATTKKGFTPLHLA-----AKYGRMKIAQMLLQKDAPVDSQGKNGV 609
GK ++ I + F PL LA + G + Q ++ + G+
Sbjct: 12 GKRTNLRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGI 71
Query: 610 TPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNA 669
T LH A H + L+ G + +A +G+TPLH AA N + + L+E A A
Sbjct: 72 TALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFA 131
Query: 670 ESKAGFTPLHLSA------QEGHTDMSSLL 693
+ ++ + +A +EG+T S L
Sbjct: 132 MT---YSDMQTAADKCEEMEEGYTQCSQFL 158
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 44/86 (51%)
Query: 139 GKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPL 198
G+ +V+ +I + + +G+T LH A +GH ++ L++ G + + +G PL
Sbjct: 48 GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL 107
Query: 199 HMASQGDHEAATRVLIYHGAGVDEIT 224
H A+ ++ + L+ GA V +T
Sbjct: 108 HCAASCNNVQVCKFLVESGAAVFAMT 133
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Query: 228 LTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTL 287
+TALH A GH + K L+ + NA +G+TPLH A + CN+V V K L
Sbjct: 71 ITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCA--------ASCNNVQVCKFL 122
Query: 288 LDRKA 292
++ A
Sbjct: 123 VESGA 127
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 30/67 (44%)
Query: 634 PHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLL 693
P G T LH A +I L+++ NA G+TPLH +A + + L
Sbjct: 63 PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFL 122
Query: 694 IEHGATV 700
+E GA V
Sbjct: 123 VESGAAV 129
Score = 38.5 bits (88), Expect = 0.014, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 10/85 (11%)
Query: 252 DPNARALNGFTPLHIA-CKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACK 310
DP+ G T LH A C H + K L+ + NA +G+TPLH A
Sbjct: 62 DPSLPNDEGITALHNAVC---------AGHTEIVKFLVQFGVNVNAADSDGWTPLHCAAS 112
Query: 311 KNRYKVVELLLKYGASIAATTESGL 335
N +V + L++ GA++ A T S +
Sbjct: 113 CNNVQVCKFLVESGAAVFAMTYSDM 137
Score = 38.5 bits (88), Expect = 0.018, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 41/100 (41%), Gaps = 26/100 (26%)
Query: 360 PDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQS 419
P G T LH A A T+IV+ L++ G +V+A A D
Sbjct: 63 PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA-ADSD------------------- 102
Query: 420 ALTRVRGETPLHLAARANQTDIVRILLRNGASVDARARED 459
G TPLH AA N + + L+ +GA+V A D
Sbjct: 103 ------GWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSD 136
Score = 36.2 bits (82), Expect = 0.086, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 28/58 (48%)
Query: 194 GLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKA 251
G+ LH A H + L+ G V+ D T LH A+ C +V+V K L++ A
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127
Score = 33.9 bits (76), Expect = 0.39, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 17/78 (21%)
Query: 524 KGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAA 583
+G T LH A G +I + L+Q G ++ A G+TPLH AA
Sbjct: 69 EGITALHNAVCAGHTEIVKFLVQ-----------------FGVNVNAADSDGWTPLHCAA 111
Query: 584 KYGRMKIAQMLLQKDAPV 601
+++ + L++ A V
Sbjct: 112 SCNNVQVCKFLVESGAAV 129
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 97/228 (42%), Gaps = 20/228 (8%)
Query: 492 GYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPV 551
G TALH++A G+ L +GA + + G T LHLA + A +LLQ P
Sbjct: 45 GQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQ---PR 101
Query: 552 DSQGKVAS--ILTESGASITATTKK----GFTPLHLAAKYGRMKIAQMLLQKDAPVDSQG 605
S + AS LT+S T+ P + R + ++ L+ ++
Sbjct: 102 PSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLE------AEN 155
Query: 606 KNGVTPLHVASHYDHQNVALLLLDRGAS---PHAVAKNGYTPLHIAAKKNQMDIATTLLE 662
+G TPLHVA + + LL D GA P G TPLH+A + + LL+
Sbjct: 156 YDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTC--GRTPLHLAVEAQAASVLELLLK 213
Query: 663 YNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTP 710
A P A G TPL + + ++ LL HGA + L+P
Sbjct: 214 AGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSP 261
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 114/290 (39%), Gaps = 43/290 (14%)
Query: 331 TESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVR---GETPLHLAARANQTDIVRILL 387
TE G T LH+A FLL A + ++ G+T LHLAA + V L
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65
Query: 388 RNGASVDARAREDQTPLHVASRLRRFSSAS---QSALTRVRGETPLHLAARANQTDIVRI 444
GA V R T LH+A R+R + A Q + R + +L D
Sbjct: 66 AAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLT---QSQDCTPD 122
Query: 445 LLRNGASVDARA--REDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKE 502
A+VD++ ++ P RL ++A DG+T LH++
Sbjct: 123 TSHAPAAVDSQPNPENEEEPRDEDWRL--------------QLEAENYDGHTPLHVAVIH 168
Query: 503 GQDEVASILTESGASITATTKK-GFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASIL 561
E+ +L ++GA + G TPLHLA + + ++LL+
Sbjct: 169 KDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK--------------- 213
Query: 562 TESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTP 611
+GA TA G TPL A +A++L AP G + ++P
Sbjct: 214 --AGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSP 261
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 89/242 (36%), Gaps = 58/242 (23%)
Query: 300 NGFTPLHIACKKNRYKVVELLLKYGAS---IAATTESGLTPLHVASFMGCMNIAIFLLQA 356
+G T LH+A ++ LL + A + + G T LH+A+ +G + L A
Sbjct: 8 DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA 67
Query: 357 GAAPDTATVRGETPLHLAARANQTDIVRILLRNGAS------------------------ 392
GA A G T LHLA R +LL+ S
Sbjct: 68 GAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAP 127
Query: 393 -----------------------VDARAREDQTPLHVAS--------RLRRFSSASQSAL 421
++A + TPLHVA RL R + A +
Sbjct: 128 AAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKP 187
Query: 422 TRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQH 481
G TPLHLA A ++ +LL+ GA AR +TPL A N +A LL H
Sbjct: 188 EPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAH 247
Query: 482 GA 483
GA
Sbjct: 248 GA 249
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 103/261 (39%), Gaps = 30/261 (11%)
Query: 426 GETPLHLAARANQTDIVRILLRNGAS---VDARAREDQTPLHVASRLGNGDIASLLLQHG 482
G+T LHLA + LL A +D + QT LH+A+ LG L G
Sbjct: 9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG 68
Query: 483 ASVDAPTKDGYTALHISAKEGQDEVASILTE-------SGASITATTKKGFTP--LHLAA 533
A V + G+TALH++ + A +L + + T + TP H A
Sbjct: 69 AGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPA 128
Query: 534 KYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQM 593
+ ++ P D ++ + A G TPLH+A + ++ ++
Sbjct: 129 AVDSQPNPE---NEEEPRDEDWRL---------QLEAENYDGHTPLHVAVIHKDAEMVRL 176
Query: 594 LLQKDAPVD---SQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAK 650
L +DA D + G TPLH+A +V LLL GA P A G TPL A
Sbjct: 177 L--RDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALL 234
Query: 651 KNQMDIATTLLEYNAKPNAES 671
+ I LL + P E
Sbjct: 235 RPNP-ILARLLRAHGAPEPED 254
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 92/234 (39%), Gaps = 23/234 (9%)
Query: 572 TKKGFTPLHLAAKYGRMKIAQMLLQKDAP---VDSQGKNGVTPLHVASHYDHQNVALLLL 628
T+ G T LHLA + LL A +D Q G T LH+A+ + L
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65
Query: 629 DRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTD 688
GA + G+T LH+A + A LL+ +P+ A T L +Q+ D
Sbjct: 66 AAGAGVLVAERGGHTALHLACRVRAHTCACVLLQ--PRPSHPRDASDTYL-TQSQDCTPD 122
Query: 689 MSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIAS 748
S H N +E+ + D G TPLH+A
Sbjct: 123 TS-----HAPAAVDSQPNPEN------EEEPRDEDWRLQLEAENYD-----GHTPLHVAV 166
Query: 749 HFGQLNMVRYLVENGANVN-ATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNA 801
MVR L + GA++N G TPLH A + +++LLL AGA P A
Sbjct: 167 IHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTA 220
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 99/247 (40%), Gaps = 16/247 (6%)
Query: 158 TRDGLTPLHCAARSGHDNVIDILIEKGAA-LYSKTKN--GLAPLHMASQGDHEAATRVLI 214
T DG T LH A H+ +D L+ A Y +N G LH+A+ + L
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65
Query: 215 YHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYK 274
GAGV TALH+A A LL + A + + C +
Sbjct: 66 AAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPD--- 122
Query: 275 SSHCNHVWVAKTLLDRKADP---------NARALNGFTPLHIACKKNRYKVVELLLKYGA 325
+SH ++ + + +P A +G TPLH+A ++V LL GA
Sbjct: 123 TSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGA 182
Query: 326 SIAATTES-GLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVR 384
+ + G TPLH+A ++ LL+AGA P G TPL A + R
Sbjct: 183 DLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILAR 242
Query: 385 ILLRNGA 391
+L +GA
Sbjct: 243 LLRAHGA 249
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 112/287 (39%), Gaps = 62/287 (21%)
Query: 94 NGFTPLYMAAQENHDGVVRYLLS-KGGNQTLATEHNI--TPLHVACKWGKVAMVELLISK 150
+G T L++A H+ + +LL G++ L ++++ T LH+A G+ + VE L +
Sbjct: 8 DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA 67
Query: 151 GANIEAKTRDGLTPLH---------CAA-----RSGHD-NVIDILIEKGAALYSKTKNGL 195
GA + R G T LH CA R H + D + + T +
Sbjct: 68 GAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAP 127
Query: 196 APLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNA 255
A + ++E R DE D+ L ++ GH
Sbjct: 128 AAVDSQPNPENEEEPR---------DE---DWRLQLEAENYDGH---------------- 159
Query: 256 RALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPN-ARALNGFTPLHIACKKNRY 314
TPLH+A + + + L D AD N G TPLH+A +
Sbjct: 160 ------TPLHVAVIHKDAE--------MVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAA 205
Query: 315 KVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPD 361
V+ELLLK GA A G TPL A + I LL+A AP+
Sbjct: 206 SVLELLLKAGADPTARMYGGRTPLGSA-LLRPNPILARLLRAHGAPE 251
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Query: 130 TPLHVACKWGKVAMVELLISKGANI-EAKTRDGLTPLHCAARSGHDNVIDILIEKGAALY 188
TPLHVA MV LL GA++ + + G TPLH A + +V+++L++ GA
Sbjct: 160 TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPT 219
Query: 189 SKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLT 229
++ G PL A + R+L HGA E D L+
Sbjct: 220 ARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLS 260
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 76 EVAKILVDNGATIN-VQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHV 134
E+ ++L D GA +N + G TPL++A + V+ LL G + T TPL
Sbjct: 172 EMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGS 231
Query: 135 ACKWGKVAMVELLISKGANIEAKTRDGLTP 164
A + LL + GA D L+P
Sbjct: 232 ALLRPNPILARLLRAHGAPEPEDGGDKLSP 261
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 97/228 (42%), Gaps = 20/228 (8%)
Query: 492 GYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPV 551
G TALH++A G+ L +GA + + G T LHLA + A +LLQ P
Sbjct: 45 GQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQ---PR 101
Query: 552 DSQGKVAS--ILTESGASITATTKK----GFTPLHLAAKYGRMKIAQMLLQKDAPVDSQG 605
S + AS LT+S T+ P + R + ++ L+ ++
Sbjct: 102 PSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLE------AEN 155
Query: 606 KNGVTPLHVASHYDHQNVALLLLDRGAS---PHAVAKNGYTPLHIAAKKNQMDIATTLLE 662
+G TPLHVA + + LL D GA P G TPLH+A + + LL+
Sbjct: 156 YDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTC--GRTPLHLAVEAQAASVLELLLK 213
Query: 663 YNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTP 710
A P A G TPL + + ++ LL HGA + L+P
Sbjct: 214 AGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSP 261
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 114/290 (39%), Gaps = 43/290 (14%)
Query: 331 TESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVR---GETPLHLAARANQTDIVRILL 387
TE G T LH+A FLL A + ++ G+T LHLAA + V L
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65
Query: 388 RNGASVDARAREDQTPLHVASRLRRFSSAS---QSALTRVRGETPLHLAARANQTDIVRI 444
GA V R T LH+A R+R + A Q + R + +L D
Sbjct: 66 AAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLT---QSQDCTPD 122
Query: 445 LLRNGASVDARA--REDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKE 502
A+VD++ ++ P RL ++A DG+T LH++
Sbjct: 123 TSHAPAAVDSQPNPENEEEPRDEDWRL--------------QLEAENYDGHTPLHVAVIH 168
Query: 503 GQDEVASILTESGASITATTKK-GFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASIL 561
E+ +L ++GA + G TPLHLA + + ++LL+
Sbjct: 169 KDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK--------------- 213
Query: 562 TESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTP 611
+GA TA G TPL A +A++L AP G + ++P
Sbjct: 214 --AGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSP 261
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 89/242 (36%), Gaps = 58/242 (23%)
Query: 300 NGFTPLHIACKKNRYKVVELLLKYGAS---IAATTESGLTPLHVASFMGCMNIAIFLLQA 356
+G T LH+A ++ LL + A + + G T LH+A+ +G + L A
Sbjct: 8 DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA 67
Query: 357 GAAPDTATVRGETPLHLAARANQTDIVRILLRNGAS------------------------ 392
GA A G T LHLA R +LL+ S
Sbjct: 68 GAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAP 127
Query: 393 -----------------------VDARAREDQTPLHVAS--------RLRRFSSASQSAL 421
++A + TPLHVA RL R + A +
Sbjct: 128 AAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKP 187
Query: 422 TRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQH 481
G TPLHLA A ++ +LL+ GA AR +TPL A N +A LL H
Sbjct: 188 EPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAH 247
Query: 482 GA 483
GA
Sbjct: 248 GA 249
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 103/261 (39%), Gaps = 30/261 (11%)
Query: 426 GETPLHLAARANQTDIVRILLRNGAS---VDARAREDQTPLHVASRLGNGDIASLLLQHG 482
G+T LHLA + LL A +D + QT LH+A+ LG L G
Sbjct: 9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG 68
Query: 483 ASVDAPTKDGYTALHISAKEGQDEVASILTE-------SGASITATTKKGFTP--LHLAA 533
A V + G+TALH++ + A +L + + T + TP H A
Sbjct: 69 AGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPA 128
Query: 534 KYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQM 593
+ ++ P D ++ + A G TPLH+A + ++ ++
Sbjct: 129 AVDSQPNPE---NEEEPRDEDWRL---------QLEAENYDGHTPLHVAVIHKDAEMVRL 176
Query: 594 LLQKDAPVD---SQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAK 650
L +DA D + G TPLH+A +V LLL GA P A G TPL A
Sbjct: 177 L--RDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALL 234
Query: 651 KNQMDIATTLLEYNAKPNAES 671
+ I LL + P E
Sbjct: 235 RPNP-ILARLLRAHGAPEPED 254
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 92/234 (39%), Gaps = 23/234 (9%)
Query: 572 TKKGFTPLHLAAKYGRMKIAQMLLQKDAP---VDSQGKNGVTPLHVASHYDHQNVALLLL 628
T+ G T LHLA + LL A +D Q G T LH+A+ + L
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65
Query: 629 DRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTD 688
GA + G+T LH+A + A LL+ +P+ A T L +Q+ D
Sbjct: 66 AAGAGVLVAERGGHTALHLACRVRAHTCACVLLQ--PRPSHPRDASDTYL-TQSQDCTPD 122
Query: 689 MSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIAS 748
S H N +E+ + D G TPLH+A
Sbjct: 123 TS-----HAPAAVDSQPNPEN------EEEPRDEDWRLQLEAENYD-----GHTPLHVAV 166
Query: 749 HFGQLNMVRYLVENGANVN-ATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNA 801
MVR L + GA++N G TPLH A + +++LLL AGA P A
Sbjct: 167 IHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTA 220
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 99/247 (40%), Gaps = 16/247 (6%)
Query: 158 TRDGLTPLHCAARSGHDNVIDILIEKGAA-LYSKTKN--GLAPLHMASQGDHEAATRVLI 214
T DG T LH A H+ +D L+ A Y +N G LH+A+ + L
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65
Query: 215 YHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYK 274
GAGV TALH+A A LL + A + + C +
Sbjct: 66 AAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPD--- 122
Query: 275 SSHCNHVWVAKTLLDRKADP---------NARALNGFTPLHIACKKNRYKVVELLLKYGA 325
+SH ++ + + +P A +G TPLH+A ++V LL GA
Sbjct: 123 TSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGA 182
Query: 326 SIAATTES-GLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVR 384
+ + G TPLH+A ++ LL+AGA P G TPL A + R
Sbjct: 183 DLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILAR 242
Query: 385 ILLRNGA 391
+L +GA
Sbjct: 243 LLRAHGA 249
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 112/287 (39%), Gaps = 62/287 (21%)
Query: 94 NGFTPLYMAAQENHDGVVRYLLS-KGGNQTLATEHNI--TPLHVACKWGKVAMVELLISK 150
+G T L++A H+ + +LL G++ L ++++ T LH+A G+ + VE L +
Sbjct: 8 DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA 67
Query: 151 GANIEAKTRDGLTPLH---------CAA-----RSGHD-NVIDILIEKGAALYSKTKNGL 195
GA + R G T LH CA R H + D + + T +
Sbjct: 68 GAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAP 127
Query: 196 APLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNA 255
A + ++E R DE D+ L ++ GH
Sbjct: 128 AAVDSQPNPENEEEPR---------DE---DWRLQLEAENYDGH---------------- 159
Query: 256 RALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPN-ARALNGFTPLHIACKKNRY 314
TPLH+A + + + L D AD N G TPLH+A +
Sbjct: 160 ------TPLHVAVIHKDAE--------MVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAA 205
Query: 315 KVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPD 361
V+ELLLK GA A G TPL A + I LL+A AP+
Sbjct: 206 SVLELLLKAGADPTARMYGGRTPLGSA-LLRPNPILARLLRAHGAPE 251
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Query: 130 TPLHVACKWGKVAMVELLISKGANI-EAKTRDGLTPLHCAARSGHDNVIDILIEKGAALY 188
TPLHVA MV LL GA++ + + G TPLH A + +V+++L++ GA
Sbjct: 160 TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPT 219
Query: 189 SKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLT 229
++ G PL A + R+L HGA E D L+
Sbjct: 220 ARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLS 260
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 76 EVAKILVDNGATIN-VQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHV 134
E+ ++L D GA +N + G TPL++A + V+ LL G + T TPL
Sbjct: 172 EMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGS 231
Query: 135 ACKWGKVAMVELLISKGANIEAKTRDGLTP 164
A + LL + GA D L+P
Sbjct: 232 ALLRPNPILARLLRAHGAPEPEDGGDKLSP 261
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 3/138 (2%)
Query: 458 EDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGAS 517
E +TP A+R + S LL+ VDA ++G TAL A G D+ +L E+GA
Sbjct: 44 EYETPWWTAARKADEQALSQLLED-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD 102
Query: 518 IT-ATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGF 576
+ + G T LH+AA Y R ++ + L++ A ++ + + E I TT KG
Sbjct: 103 LDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKG- 161
Query: 577 TPLHLAAKYGRMKIAQML 594
P+ + G K+ +L
Sbjct: 162 NPMQFGRRIGLEKVINVL 179
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 38/107 (35%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
Query: 427 ETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVD 486
ETP AAR + LL + VDA +T L + LG+ LL + GA +D
Sbjct: 46 ETPWWTAARKADEQALSQLLED-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD 104
Query: 487 -APTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLA 532
+ G TALH++A + EV L E GA I ++G T L LA
Sbjct: 105 HRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 151
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 2/108 (1%)
Query: 97 TPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEA 156
TP + AA++ + + LL + + E+ T L G V LL GA+++
Sbjct: 47 TPWWTAARKADEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH 105
Query: 157 K-TRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQ 203
+ R GLT LH AA V++ L+E GA + + + GL L +A +
Sbjct: 106 RDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELARE 153
Score = 39.3 bits (90), Expect = 0.010, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 16/105 (15%)
Query: 527 TPLHLAA-KYGRMKIAQMLLQKDA-PVDSQGKVA-------------SILTESGASIT-A 570
TP AA K ++Q+L +D VD G+ A +L E+GA +
Sbjct: 47 TPWWTAARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHR 106
Query: 571 TTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVA 615
+ G T LH+AA Y R ++ + L++ A ++ + + G+T L +A
Sbjct: 107 DMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 151
Score = 38.9 bits (89), Expect = 0.013, Method: Composition-based stats.
Identities = 42/158 (26%), Positives = 65/158 (41%), Gaps = 34/158 (21%)
Query: 399 EDQTPLHVASRLRRFSSASQSALTRV-----------RGETPLHLAARANQTDIVRILLR 447
E +TP A+R A + AL+++ G T L A VR+L
Sbjct: 44 EYETPWWTAAR-----KADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAE 98
Query: 448 NGASVDAR-AREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDE 506
GA +D R R T LH+A+ ++ L++ GA ++ + G TAL + A+E
Sbjct: 99 AGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALEL-ARE---- 153
Query: 507 VASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
I TT KG P+ + G K+ +L
Sbjct: 154 -----------ILKTTPKG-NPMQFGRRIGLEKVINVL 179
Score = 38.5 bits (88), Expect = 0.016, Method: Composition-based stats.
Identities = 38/144 (26%), Positives = 58/144 (40%), Gaps = 22/144 (15%)
Query: 615 ASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAK-PNAESKA 673
A D Q ++ LL DR AV +NG T L A L E A + + +
Sbjct: 53 ARKADEQALSQLLEDRDVD--AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG 110
Query: 674 GFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQ----------------- 716
G T LH++A ++ L+E GA + + + GLT L L +
Sbjct: 111 GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRI 170
Query: 717 --EDKVNVATITMFNGAEIDPVTK 738
E +NV +F AE+D + +
Sbjct: 171 GLEKVINVLEGQVFEYAEVDEIVE 194
Score = 36.6 bits (83), Expect = 0.054, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 285 KTLLDRKADPNARALNG-FTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVA 341
+ L + AD + R + G T LH+A R +VVE L++ GA I E GLT L +A
Sbjct: 94 RLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 151
Score = 34.7 bits (78), Expect = 0.20, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 568 ITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQG-KNGVTPLHVASHYDHQNVALL 626
+ A + G T L A G K ++L + A +D + + G+T LH+A+ Y V
Sbjct: 70 VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEA 129
Query: 627 LLDRGASPHAVAKNGYTPLHIA 648
L++ GA + G T L +A
Sbjct: 130 LVELGADIEVEDERGLTALELA 151
Score = 33.1 bits (74), Expect = 0.71, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 51/140 (36%), Gaps = 33/140 (23%)
Query: 643 TPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSH 702
TP AA+K + LLE + +A + G T L A G LL E GA + H
Sbjct: 47 TPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH 105
Query: 703 QAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVEN 762
+ G G T LH+A+ + + +V LVE
Sbjct: 106 RDMRG--------------------------------GLTALHMAAGYVRPEVVEALVEL 133
Query: 763 GANVNATTNLGYTPLHQASQ 782
GA++ G T L A +
Sbjct: 134 GADIEVEDERGLTALELARE 153
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 6/108 (5%)
Query: 163 TPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDE 222
TP AAR + + L+E + + +NG L + + R+L GA +D
Sbjct: 47 TPWWTAARKADEQALSQLLED-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH 105
Query: 223 ITV-DYLTALHVASHCGHVR--VAKTLLDRKADPNARALNGFTPLHIA 267
+ LTALH+A+ G+VR V + L++ AD G T L +A
Sbjct: 106 RDMRGGLTALHMAA--GYVRPEVVEALVELGADIEVEDERGLTALELA 151
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 18/109 (16%)
Query: 73 GQEEVAKILVDNGATINVQSLNG-FTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITP 131
G ++ ++L + GA ++ + + G T L+MAA VV L+ G + + E +T
Sbjct: 88 GSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTA 147
Query: 132 LHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 180
L +A E+L KT P+ R G + VI++L
Sbjct: 148 LELA--------REIL---------KTTPKGNPMQFGRRIGLEKVINVL 179
Score = 29.6 bits (65), Expect = 7.4, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
Query: 283 VAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASI-AATTESGLTPLHVA 341
+++ L DR D A NG T L K V LL + GA + GLT LH+A
Sbjct: 61 LSQLLEDRDVD--AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA 118
Query: 342 SFMGCMNIAIFLLQAGAAPDTATVRGETPLHLA 374
+ + L++ GA + RG T L LA
Sbjct: 119 AGYVRPEVVEALVELGADIEVEDERGLTALELA 151
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 89/188 (47%), Gaps = 7/188 (3%)
Query: 612 LHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAES 671
L A+ D + V +L D V G TPL+IA N ++IA L++ A N ++
Sbjct: 10 LEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQN 69
Query: 672 KAGFTPLHLSAQEGHTDMSSLLIEHGA-TVSHQAKNGLTPLHLCAQEDKVNVATITMFNG 730
+P + +G T++ + +++H ++ + G L A++ ++ + + +G
Sbjct: 70 SISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDG 129
Query: 731 AE-IDPVTKAGFTPLHIASHFGQLN-----MVRYLVENGANVNATTNLGYTPLHQASQQG 784
E ID G+T L A + N +V+ L+ENGA+ + N G T + A+Q+G
Sbjct: 130 REDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKG 189
Query: 785 RVLIIDLL 792
I +L
Sbjct: 190 YTEISKIL 197
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 87/200 (43%), Gaps = 28/200 (14%)
Query: 506 EVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESG 565
+V IL ++ + +G TPL++A ++IA+ L+ + A ++ Q ++
Sbjct: 20 KVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISD------ 73
Query: 566 ASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPV----DSQGKNGVTPLHVASHYDHQ 621
+P A GR +I +L+ P + G N + P H D
Sbjct: 74 -----------SPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHID-- 120
Query: 622 NVALLLLDRGASPHAVAKNGYTPLHIAA---KKNQM--DIATTLLEYNAKPNAESKAGFT 676
NV LLL D GYT L A + NQ+ DI L+E A + + +G T
Sbjct: 121 NVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRT 180
Query: 677 PLHLSAQEGHTDMSSLLIEH 696
+ + Q+G+T++S +L ++
Sbjct: 181 AMDYANQKGYTEISKILAQY 200
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 54/128 (42%), Gaps = 1/128 (0%)
Query: 711 LHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATT 770
L Q D V I ++D V G TPL+IA H + + + L++ GA++N
Sbjct: 10 LEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQN 69
Query: 771 NLGYTPLHQASQQGRVLIIDLLLG-AGAQPNATTNLFCCATILVKNGAEIDPVTKLSDEH 829
++ +P A QGR I+ +L A N A I ID V L ++
Sbjct: 70 SISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDG 129
Query: 830 EKSIDLPN 837
+ ID N
Sbjct: 130 REDIDFQN 137
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 75/184 (40%), Gaps = 25/184 (13%)
Query: 301 GFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAP 360
G TPL+IA N ++ + L+ GA I +P A G I ++L+ A P
Sbjct: 39 GNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKH-ATP 97
Query: 361 DTA--TVRGETPLHLAARANQTDIVRILLRNG-ASVDARAREDQTPLHVASRLRRFSSAS 417
D G L AA D V++LL +G +D + T L A LR +
Sbjct: 98 DLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLY 157
Query: 418 QSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASL 477
Q DIV++L+ NGA + +T + A++ G +I+ +
Sbjct: 158 Q---------------------DIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKI 196
Query: 478 LLQH 481
L Q+
Sbjct: 197 LAQY 200
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 14/174 (8%)
Query: 425 RGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGA- 483
G TPL++A N +I + L+ GA ++ + +P A G +I + +L+H
Sbjct: 38 EGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATP 97
Query: 484 SVDAPTKDGYTALHISAKEGQ-DEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQ 542
++ + G AL +A++G D V +L + I G+T L A ++
Sbjct: 98 DLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVG---LREGN 154
Query: 543 MLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQ 596
L Q + +L E+GA + G T + A + G +I+++L Q
Sbjct: 155 QLYQ---------DIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 88/215 (40%), Gaps = 31/215 (14%)
Query: 305 LHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTAT 364
L A +++ KV E+L + G TPL++A + IA L+ GA +
Sbjct: 10 LEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQN 69
Query: 365 VRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRV 424
++P A +T+I+ +L+ H L + + +AL
Sbjct: 70 SISDSPYLYAGAQGRTEILAYMLK----------------HATPDLNKHNRYGGNAL--- 110
Query: 425 RGETPLHLAARANQTDIVRILLRNG-ASVDARAREDQTPL--HVASRLGN---GDIASLL 478
P AA D V++LL +G +D + T L V R GN DI LL
Sbjct: 111 ---IP---AAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLL 164
Query: 479 LQHGASVDAPTKDGYTALHISAKEGQDEVASILTE 513
+++GA G TA+ + ++G E++ IL +
Sbjct: 165 MENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 80/197 (40%), Gaps = 13/197 (6%)
Query: 196 APLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNA 255
A L A+Q D + +L VDE+ + T L++A H + +AK L+DR AD N
Sbjct: 8 ALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINL 67
Query: 256 RALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYK 315
+ +P A + R + +A L D N G L A +K
Sbjct: 68 QNSISDSPYLYAGAQGRTE-------ILAYMLKHATPDLNKHNRYGGNALIPAAEKGHID 120
Query: 316 VVELLLKYG-ASIAATTESGLTPLHVASFMGCMN-----IAIFLLQAGAAPDTATVRGET 369
V+LLL+ G I + G T L A + N I L++ GA G T
Sbjct: 121 NVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRT 180
Query: 370 PLHLAARANQTDIVRIL 386
+ A + T+I +IL
Sbjct: 181 AMDYANQKGYTEISKIL 197
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 17/166 (10%)
Query: 57 NTKLEVSLSNTKFEATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLS 116
NT L +++ N E +AK L+D GA IN+Q+ +P A + ++ Y+L
Sbjct: 40 NTPLNIAVHNNDIE------IAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYML- 92
Query: 117 KGGNQTLATEHNI---TPLHVACKWGKVAMVELLISKG-ANIEAKTRDGLTPLHCAA--R 170
K L +HN L A + G + V+LL+ G +I+ + G T L A R
Sbjct: 93 KHATPDL-NKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLR 151
Query: 171 SG---HDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVL 213
G + +++ +L+E GA K +G + A+Q + +++L
Sbjct: 152 EGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 86/186 (46%), Gaps = 15/186 (8%)
Query: 145 ELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDI---LIEKGAALYSKTKNGLAP-LHM 200
E+L ++ +G TPL+ A H+N I+I LI++GA + + +P L+
Sbjct: 23 EILQDTTYQVDEVDTEGNTPLNIAV---HNNDIEIAKALIDRGADINLQNSISDSPYLYA 79
Query: 201 ASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLL-DRKADPNARALN 259
+QG E +L + +++ AL A+ GH+ K LL D + D + +
Sbjct: 80 GAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDF 139
Query: 260 GFTPLHIACKKNRYKSSHCNHVW--VAKTLLDRKADPNARALNGFTPLHIACKKNRYKVV 317
G+T L A N ++ + K L++ AD + + +G T + A +K ++
Sbjct: 140 GYTALIEAV-----GLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEIS 194
Query: 318 ELLLKY 323
++L +Y
Sbjct: 195 KILAQY 200
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 3/138 (2%)
Query: 458 EDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGAS 517
E +TP A+R + S LL+ VDA ++G TAL A G D+ +L E+GA
Sbjct: 43 EYETPWWTAARKADEQALSQLLED-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD 101
Query: 518 IT-ATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGF 576
+ + G T LH+AA Y R ++ + L++ A ++ + + E I TT KG
Sbjct: 102 LDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKG- 160
Query: 577 TPLHLAAKYGRMKIAQML 594
P+ + G K+ +L
Sbjct: 161 NPMQFGRRIGLEKVINVL 178
Score = 49.7 bits (117), Expect = 7e-06, Method: Composition-based stats.
Identities = 38/107 (35%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
Query: 427 ETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVD 486
ETP AAR + LL + VDA +T L + LG+ LL + GA +D
Sbjct: 45 ETPWWTAARKADEQALSQLLED-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD 103
Query: 487 -APTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLA 532
+ G TALH++A + EV L E GA I ++G T L LA
Sbjct: 104 HRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 150
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 2/108 (1%)
Query: 97 TPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEA 156
TP + AA++ + + LL + + E+ T L G V LL GA+++
Sbjct: 46 TPWWTAARKADEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH 104
Query: 157 K-TRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQ 203
+ R GLT LH AA V++ L+E GA + + + GL L +A +
Sbjct: 105 RDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELARE 152
Score = 38.1 bits (87), Expect = 0.019, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 16/105 (15%)
Query: 527 TPLHLAA-KYGRMKIAQMLLQKDA-PVDSQGKVA-------------SILTESGASIT-A 570
TP AA K ++Q+L +D VD G+ A +L E+GA +
Sbjct: 46 TPWWTAARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHR 105
Query: 571 TTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVA 615
+ G T LH+AA Y R ++ + L++ A ++ + + G+T L +A
Sbjct: 106 DMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 150
Score = 37.4 bits (85), Expect = 0.030, Method: Composition-based stats.
Identities = 42/158 (26%), Positives = 65/158 (41%), Gaps = 34/158 (21%)
Query: 399 EDQTPLHVASRLRRFSSASQSALTRV-----------RGETPLHLAARANQTDIVRILLR 447
E +TP A+R A + AL+++ G T L A VR+L
Sbjct: 43 EYETPWWTAAR-----KADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAE 97
Query: 448 NGASVDAR-AREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDE 506
GA +D R R T LH+A+ ++ L++ GA ++ + G TAL + A+E
Sbjct: 98 AGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALEL-ARE---- 152
Query: 507 VASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
I TT KG P+ + G K+ +L
Sbjct: 153 -----------ILKTTPKG-NPMQFGRRIGLEKVINVL 178
Score = 36.6 bits (83), Expect = 0.053, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Query: 615 ASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAK-PNAESKA 673
A D Q ++ LL DR AV +NG T L A L E A + + +
Sbjct: 52 ARKADEQALSQLLEDRDVD--AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG 109
Query: 674 GFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQ 716
G T LH++A ++ L+E GA + + + GLT L L +
Sbjct: 110 GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELARE 152
Score = 36.2 bits (82), Expect = 0.080, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 285 KTLLDRKADPNARAL-NGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVA 341
+ L + AD + R + G T LH+A R +VVE L++ GA I E GLT L +A
Sbjct: 93 RLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 150
Score = 34.3 bits (77), Expect = 0.29, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 568 ITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQG-KNGVTPLHVASHYDHQNVALL 626
+ A + G T L A G K ++L + A +D + + G+T LH+A+ Y V
Sbjct: 69 VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEA 128
Query: 627 LLDRGASPHAVAKNGYTPLHIA 648
L++ GA + G T L +A
Sbjct: 129 LVELGADIEVEDERGLTALELA 150
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 51/140 (36%), Gaps = 33/140 (23%)
Query: 643 TPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSH 702
TP AA+K + LLE + +A + G T L A G LL E GA + H
Sbjct: 46 TPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH 104
Query: 703 QAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVEN 762
+ G G T LH+A+ + + +V LVE
Sbjct: 105 RDMRG--------------------------------GLTALHMAAGYVRPEVVEALVEL 132
Query: 763 GANVNATTNLGYTPLHQASQ 782
GA++ G T L A +
Sbjct: 133 GADIEVEDERGLTALELARE 152
Score = 30.4 bits (67), Expect = 4.0, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 6/108 (5%)
Query: 163 TPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDE 222
TP AAR + + L+E + + +NG L + + R+L GA +D
Sbjct: 46 TPWWTAARKADEQALSQLLED-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH 104
Query: 223 ITV-DYLTALHVASHCGHVR--VAKTLLDRKADPNARALNGFTPLHIA 267
+ LTALH+A+ G+VR V + L++ AD G T L +A
Sbjct: 105 RDMRGGLTALHMAA--GYVRPEVVEALVELGADIEVEDERGLTALELA 150
Score = 29.6 bits (65), Expect = 8.2, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 18/109 (16%)
Query: 73 GQEEVAKILVDNGATINVQSL-NGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITP 131
G ++ ++L + GA ++ + + G T L+MAA VV L+ G + + E +T
Sbjct: 87 GSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTA 146
Query: 132 LHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 180
L +A E+L KT P+ R G + VI++L
Sbjct: 147 LELA--------REIL---------KTTPKGNPMQFGRRIGLEKVINVL 178
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 81/193 (41%), Gaps = 47/193 (24%)
Query: 366 RGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVR 425
RG + LH+A V++L+ NGA+V ARA RF Q
Sbjct: 94 RGHSALHIAIEKRSLQCVKLLVENGANVHARA------------CGRFFQKGQGTCFYF- 140
Query: 426 GETPLHLAARANQTDIVRILLRNG---ASVDARAREDQTPLHVASRLGNGDIASLLLQHG 482
GE PL LAA Q D+V LL N AS+ A + T LH + + ++
Sbjct: 141 GELPLSLAACTKQWDVVSYLLENPHQPASLQATDSQGNTVLHALVXISDNSAENI----- 195
Query: 483 ASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTK-------KGFTPLHLAAKY 535
AL S +G L ++GA + T + + TPL LAAK
Sbjct: 196 ------------ALVTSXYDG-------LLQAGARLCPTVQLEDIRNLQDLTPLKLAAKE 236
Query: 536 GRMKIAQMLLQKD 548
G+++I + +LQ++
Sbjct: 237 GKIEIFRHILQRE 249
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 76/187 (40%), Gaps = 33/187 (17%)
Query: 301 GFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAP 360
G + LHIA +K + V+LL++ GA++ A C Q G
Sbjct: 95 GHSALHIAIEKRSLQCVKLLVENGANVHA--------------RACGR----FFQKGQG- 135
Query: 361 DTATVRGETPLHLAARANQTDIVRILLRN---GASVDARAREDQTPLHVASRLRRFSSAS 417
T GE PL LAA Q D+V LL N AS+ A + T LH + +SA
Sbjct: 136 -TCFYFGELPLSLAACTKQWDVVSYLLENPHQPASLQATDSQGNTVLHALVXISD-NSAE 193
Query: 418 QSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASL 477
AL + L AR T + D R +D TPL +A++ G +I
Sbjct: 194 NIALVTSXYDGLLQAGARLCPTVQLE---------DIRNLQDLTPLKLAAKEGKIEIFRH 244
Query: 478 LLQHGAS 484
+LQ S
Sbjct: 245 ILQREFS 251
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 78/187 (41%), Gaps = 44/187 (23%)
Query: 425 RGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGAS 484
RG + LH+A V++L+ NGA+V ARA Q G
Sbjct: 94 RGHSALHIAIEKRSLQCVKLLVENGANVHARA------------------CGRFFQKGQG 135
Query: 485 VDAPTKDGYTALHISAKEGQDEVASILTESG---ASITATTKKGFTPLHLAAKYGRMKIA 541
G L ++A Q +V S L E+ AS+ AT +G T LH
Sbjct: 136 T--CFYFGELPLSLAACTKQWDVVSYLLENPHQPASLQATDSQGNTVLH----------- 182
Query: 542 QMLLQKDAPVDSQGKVASI---LTESGASITATTK-------KGFTPLHLAAKYGRMKIA 591
++ D ++ V S L ++GA + T + + TPL LAAK G+++I
Sbjct: 183 ALVXISDNSAENIALVTSXYDGLLQAGARLCPTVQLEDIRNLQDLTPLKLAAKEGKIEIF 242
Query: 592 QMLLQKD 598
+ +LQ++
Sbjct: 243 RHILQRE 249
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 72/165 (43%), Gaps = 40/165 (24%)
Query: 260 GFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGF-------------TPLH 306
G + LHIA +K +S C K L++ A+ +ARA F PL
Sbjct: 95 GHSALHIAIEK---RSLQC-----VKLLVENGANVHARACGRFFQKGQGTCFYFGELPLS 146
Query: 307 IACKKNRYKVVELLLK---YGASIAATTESGLTPLHV---ASFMGCMNIAIF------LL 354
+A ++ VV LL+ AS+ AT G T LH S NIA+ LL
Sbjct: 147 LAACTKQWDVVSYLLENPHQPASLQATDSQGNTVLHALVXISDNSAENIALVTSXYDGLL 206
Query: 355 QAGA--AP-----DTATVRGETPLHLAARANQTDIVRILLRNGAS 392
QAGA P D ++ TPL LAA+ + +I R +L+ S
Sbjct: 207 QAGARLCPTVQLEDIRNLQDLTPLKLAAKEGKIEIFRHILQREFS 251
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 23/118 (19%)
Query: 664 NAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVA 723
NA+ + G + LH++ ++ LL+E+GA V +A C + +
Sbjct: 85 NAQCTDDYYRGHSALHIAIEKRSLQCVKLLVENGANVHARA---------CGRFFQKGQG 135
Query: 724 TITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVEN---GANVNATTNLGYTPLH 778
T F G PL +A+ Q ++V YL+EN A++ AT + G T LH
Sbjct: 136 TCFYF-----------GELPLSLAACTKQWDVVSYLLENPHQPASLQATDSQGNTVLH 182
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 57/147 (38%), Gaps = 32/147 (21%)
Query: 608 GVTPLHVASHYDHQNVALLLLDRGASPHAVAKN-------------GYTPLHIAAKKNQM 654
G + LH+A LL++ GA+ HA A G PL +AA Q
Sbjct: 95 GHSALHIAIEKRSLQCVKLLVENGANVHARACGRFFQKGQGTCFYFGELPLSLAACTKQW 154
Query: 655 DIATTLLEYNAKP---NAESKAGFTPLH----LSAQEGH-----TDMSSLLIEHGATVSH 702
D+ + LLE +P A G T LH +S T L++ GA +
Sbjct: 155 DVVSYLLENPHQPASLQATDSQGNTVLHALVXISDNSAENIALVTSXYDGLLQAGARLCP 214
Query: 703 QAK-------NGLTPLHLCAQEDKVNV 722
+ LTPL L A+E K+ +
Sbjct: 215 TVQLEDIRNLQDLTPLKLAAKEGKIEI 241
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 66/166 (39%), Gaps = 23/166 (13%)
Query: 516 ASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKG 575
A T +G + LH+A + ++ ++L++ A V ++ G G
Sbjct: 86 AQCTDDYYRGHSALHIAIEKRSLQCVKLLVENGANVHARACGRFFQKGQGTCFYF----G 141
Query: 576 FTPLHLAAKYGRMKIAQMLLQKD------APVDSQGKNGVTPLHVASHYDHQNVALL--- 626
PL LAA + + LL+ DSQG + L S +N+AL+
Sbjct: 142 ELPLSLAACTKQWDVVSYLLENPHQPASLQATDSQGNTVLHALVXISDNSAENIALVTSX 201
Query: 627 ---LLDRGASPHAVAK-------NGYTPLHIAAKKNQMDIATTLLE 662
LL GA + TPL +AAK+ +++I +L+
Sbjct: 202 YDGLLQAGARLCPTVQLEDIRNLQDLTPLKLAAKEGKIEIFRHILQ 247
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 79/181 (43%), Gaps = 20/181 (11%)
Query: 485 VDAPTKDGYTALHISAKEGQDEVASILTESG-ASITATTKKGFTPLHLAAKYGRMKIAQM 543
V+ +G TALH S V L +SG + + G++P+ L A +A +
Sbjct: 104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTA------LATL 157
Query: 544 LLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDS 603
Q D Q L G ++ G T L LA +GR+ + + LL +A V+
Sbjct: 158 KTQDDIETVLQ------LFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNV 211
Query: 604 QGKNGVTPLHVASHYDHQNVALLLLDRGASPHA----VAKNGYTPLHIAAKKNQMDIATT 659
Q +G T L A + H+ +A LLL A P ++G T L +A Q +IA+
Sbjct: 212 QDDDGSTALMCACEHGHKEIAGLLL---AVPSCDISLTDRDGSTALMVALDAGQSEIASM 268
Query: 660 L 660
L
Sbjct: 269 L 269
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 73/159 (45%), Gaps = 14/159 (8%)
Query: 367 GETPLHLAARANQTDIVRILLRNG-ASVDARAREDQTPL------------HVASRLRRF 413
G T LH + +V+ LL +G VD + R +P+ + + L+ F
Sbjct: 111 GNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLF 170
Query: 414 SSASQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGD 473
+ +A G+T L LA + D+V+ LL A V+ + + T L A G+ +
Sbjct: 171 RLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKE 230
Query: 474 IASLLLQ-HGASVDAPTKDGYTALHISAKEGQDEVASIL 511
IA LLL + +DG TAL ++ GQ E+AS+L
Sbjct: 231 IAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASML 269
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 79/174 (45%), Gaps = 27/174 (15%)
Query: 57 NTKLEVSLSNTKFEATGQEEVAKILVDNGAT-INVQSLNGFTPLYMAA------QENHDG 109
NT L S+S+ F Q L+D+G ++ Q+ G++P+ + A Q++ +
Sbjct: 112 NTALHYSVSHANFPVVQQ------LLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIET 165
Query: 110 VVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAA 169
V++ L G A++ T L +A G+V +V+ L++ A++ + DG T L CA
Sbjct: 166 VLQ-LFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCAC 224
Query: 170 RSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEI 223
GH + +L+ P S D + +T +++ AG EI
Sbjct: 225 EHGHKEIAGLLLA-------------VPSCDISLTDRDGSTALMVALDAGQSEI 265
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 68/147 (46%), Gaps = 12/147 (8%)
Query: 656 IATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGAT-VSHQAKNGLTPLHLC 714
++ LL+Y N G T LH S + + L++ G V Q + G +P+ L
Sbjct: 95 MSARLLDYVV--NIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLT 152
Query: 715 A------QEDKVNVATITMFNGAEID-PVTKAGFTPLHIASHFGQLNMVRYLVENGANVN 767
A Q+D V + +F I+ ++AG T L +A G++++V+ L+ A+VN
Sbjct: 153 ALATLKTQDDIETV--LQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVN 210
Query: 768 ATTNLGYTPLHQASQQGRVLIIDLLLG 794
+ G T L A + G I LLL
Sbjct: 211 VQDDDGSTALMCACEHGHKEIAGLLLA 237
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 80/198 (40%), Gaps = 16/198 (8%)
Query: 264 LHIACKKNRYKSSHCNHVWVAKTLLDRKAD--PNARALNGFTPLHIACKKNRYKVVELLL 321
L +AC+ + + H+ + + R D N NG T LH + + VV+ LL
Sbjct: 72 LRLACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLL 131
Query: 322 KYG-ASIAATTESGLTPLHVASFMGC-----MNIAIFLLQAGAAPDTATVRGETPLHLAA 375
G + +G +P+ + + + + L + G A+ G+T L LA
Sbjct: 132 DSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAV 191
Query: 376 RANQTDIVRILLRNGASVDARAREDQTPLHVASR--------LRRFSSASQSALTRVRGE 427
+ D+V+ LL A V+ + + T L A L + +LT G
Sbjct: 192 SHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGS 251
Query: 428 TPLHLAARANQTDIVRIL 445
T L +A A Q++I +L
Sbjct: 252 TALMVALDAGQSEIASML 269
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 229 TALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACK 269
TAL +A G V V K LL +AD N + +G T L AC+
Sbjct: 185 TALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACE 225
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 80/186 (43%), Gaps = 33/186 (17%)
Query: 366 RGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVR 425
+G + LH+A V++L+ NGA V RA RF Q
Sbjct: 89 QGHSALHIAIEKRSLQCVKLLVENGADVHLRA------------CGRFFQKHQGTCFYF- 135
Query: 426 GETPLHLAARANQTDIVRILLRNG---ASVDARAREDQTPLHVASRLGNGDIASLLLQHG 482
GE PL LAA Q D+V LL N AS++A T LH + +
Sbjct: 136 GELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIAD----------- 184
Query: 483 ASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQ 542
++P +AL I +G ++ + L + + +G TPL LAAK G+++I +
Sbjct: 185 ---NSPEN---SALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFR 238
Query: 543 MLLQKD 548
+LQ++
Sbjct: 239 HILQRE 244
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 80/186 (43%), Gaps = 42/186 (22%)
Query: 425 RGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGAS 484
+G + LH+A V++L+ NGA V RA H + G++
Sbjct: 89 QGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELP--------- 139
Query: 485 VDAPTKDGYTALHISAKEGQDEVASILTESG---ASITATTKKGFTPLHLAAKYGRMKIA 541
L ++A Q +V + L E+ AS+ AT G T LH A
Sbjct: 140 -----------LSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLH----------A 178
Query: 542 QMLLQKDAPVDSQGKVASI--LTESGASITATTK-------KGFTPLHLAAKYGRMKIAQ 592
+++ ++P +S + L + GA + T + +G TPL LAAK G+++I +
Sbjct: 179 LVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFR 238
Query: 593 MLLQKD 598
+LQ++
Sbjct: 239 HILQRE 244
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 67/154 (43%), Gaps = 32/154 (20%)
Query: 664 NAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVA 723
NA+ E G + LH++ ++ LL+E+GA V +A C + + +
Sbjct: 80 NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRA---------CGRFFQKHQG 130
Query: 724 TITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVEN---GANVNATTNLGYTPLH-- 778
T F G PL +A+ Q ++V YL+EN A++ AT +LG T LH
Sbjct: 131 TCFYF-----------GELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHAL 179
Query: 779 ----QASQQGRVLII---DLLLGAGAQPNATTNL 805
S + L+I D LL GA+ T L
Sbjct: 180 VMIADNSPENSALVIHMYDGLLQMGARLCPTVQL 213
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 71/166 (42%), Gaps = 40/166 (24%)
Query: 259 NGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGF-------------TPL 305
G + LHIA +K +S C K L++ AD + RA F PL
Sbjct: 89 QGHSALHIAIEK---RSLQC-----VKLLVENGADVHLRACGRFFQKHQGTCFYFGELPL 140
Query: 306 HIACKKNRYKVVELLLK---YGASIAATTESGLTPLHVASFMG-------CMNIAIF--L 353
+A ++ VV LL+ AS+ AT G T LH + + I ++ L
Sbjct: 141 SLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGL 200
Query: 354 LQAGA--AP-----DTATVRGETPLHLAARANQTDIVRILLRNGAS 392
LQ GA P + + +G TPL LAA+ + +I R +L+ S
Sbjct: 201 LQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFS 246
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 80/183 (43%), Gaps = 27/183 (14%)
Query: 366 RGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVR 425
+G + LH+A V++L+ NGA V RA RF Q
Sbjct: 102 QGHSALHIAIEKRSLQCVKLLVENGADVHLRA------------CGRFFQKHQGTCFYF- 148
Query: 426 GETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASV 485
GE PL LAA Q D+V LL N L LGN + +L++ +
Sbjct: 149 GELPLSLAACTKQWDVVTYLLENP--------HQPASLEATDSLGNTVLHALVM---IAD 197
Query: 486 DAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLL 545
++P +AL I +G ++ + L + + +G TPL LAAK G+++I + +L
Sbjct: 198 NSPEN---SALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHIL 254
Query: 546 QKD 548
Q++
Sbjct: 255 QRE 257
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 80/186 (43%), Gaps = 42/186 (22%)
Query: 425 RGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGAS 484
+G + LH+A V++L+ NGA V RA H + G++
Sbjct: 102 QGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELP--------- 152
Query: 485 VDAPTKDGYTALHISAKEGQDEVASILTESG---ASITATTKKGFTPLHLAAKYGRMKIA 541
L ++A Q +V + L E+ AS+ AT G T LH A
Sbjct: 153 -----------LSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLH----------A 191
Query: 542 QMLLQKDAPVDSQGKVASI--LTESGASITATTK-------KGFTPLHLAAKYGRMKIAQ 592
+++ ++P +S + L + GA + T + +G TPL LAAK G+++I +
Sbjct: 192 LVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFR 251
Query: 593 MLLQKD 598
+LQ++
Sbjct: 252 HILQRE 257
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 67/154 (43%), Gaps = 32/154 (20%)
Query: 664 NAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVA 723
NA+ E G + LH++ ++ LL+E+GA V +A C + + +
Sbjct: 93 NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRA---------CGRFFQKHQG 143
Query: 724 TITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVEN---GANVNATTNLGYTPLH-- 778
T F G PL +A+ Q ++V YL+EN A++ AT +LG T LH
Sbjct: 144 TCFYF-----------GELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHAL 192
Query: 779 ----QASQQGRVLII---DLLLGAGAQPNATTNL 805
S + L+I D LL GA+ T L
Sbjct: 193 VMIADNSPENSALVIHMYDGLLQMGARLCPTVQL 226
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 71/166 (42%), Gaps = 40/166 (24%)
Query: 259 NGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGF-------------TPL 305
G + LHIA +K +S C K L++ AD + RA F PL
Sbjct: 102 QGHSALHIAIEK---RSLQC-----VKLLVENGADVHLRACGRFFQKHQGTCFYFGELPL 153
Query: 306 HIACKKNRYKVVELLLK---YGASIAATTESGLTPLHVASFMG-------CMNIAIF--L 353
+A ++ VV LL+ AS+ AT G T LH + + I ++ L
Sbjct: 154 SLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGL 213
Query: 354 LQAGA--AP-----DTATVRGETPLHLAARANQTDIVRILLRNGAS 392
LQ GA P + + +G TPL LAA+ + +I R +L+ S
Sbjct: 214 LQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFS 259
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 100 YMAAQENHD-GVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKT 158
+M A +N D V+ ++KG + E PLH A G++ ++E L+ KGA+I A
Sbjct: 6 FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD 65
Query: 159 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLH 199
+ +TPL A GH + + +L+ KGA K +GL L
Sbjct: 66 KHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALE 106
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 48/94 (51%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
G + K V G +N G PL+ AA ++ +LL KG + +H+ITPL
Sbjct: 13 GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 72
Query: 133 HVACKWGKVAMVELLISKGANIEAKTRDGLTPLH 166
A G V+ V+LL+SKGA+ K DGLT L
Sbjct: 73 LSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALE 106
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 565 GASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVA 624
G + T + G PLH AA G+++I + LL K A +++ K+ +TPL A + H +
Sbjct: 25 GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCV 84
Query: 625 LLLLDRGASPHAVAKNGYTPLHIAAKKNQ 653
LLL +GA +G T L A NQ
Sbjct: 85 KLLLSKGADKTVKGPDGLTALE--ATDNQ 111
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%)
Query: 730 GAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLII 789
G +++ + G PLH A+ GQL ++ +L+ GA++NA TPL A +G V +
Sbjct: 25 GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCV 84
Query: 790 DLLLGAGAQ 798
LLL GA
Sbjct: 85 KLLLSKGAD 93
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 39/83 (46%)
Query: 630 RGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDM 689
+G + + G PLH AA Q++I LL A NA K TPL + EGH
Sbjct: 24 KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSC 83
Query: 690 SSLLIEHGATVSHQAKNGLTPLH 712
LL+ GA + + +GLT L
Sbjct: 84 VKLLLSKGADKTVKGPDGLTALE 106
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 54/123 (43%), Gaps = 21/123 (17%)
Query: 505 DEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTES 564
DEV + + G + T + G PLH AA G+++I + LL K
Sbjct: 16 DEVKDYVAK-GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK----------------- 57
Query: 565 GASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVA 624
GA I A K TPL A G + ++LL K A +G +G+T L D+Q +
Sbjct: 58 GADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEAT---DNQAIK 114
Query: 625 LLL 627
LL
Sbjct: 115 ALL 117
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 34/72 (47%)
Query: 426 GETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASV 485
G PLH AA Q +I+ LL GA ++A + TPL A G+ LLL GA
Sbjct: 35 GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADK 94
Query: 486 DAPTKDGYTALH 497
DG TAL
Sbjct: 95 TVKGPDGLTALE 106
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 40/98 (40%)
Query: 433 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDG 492
A + D V+ + G V+ + PLH A+ G +I LL GA ++AP K
Sbjct: 9 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 68
Query: 493 YTALHISAKEGQDEVASILTESGASITATTKKGFTPLH 530
T L + EG +L GA T G T L
Sbjct: 69 ITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALE 106
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 48/98 (48%)
Query: 135 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNG 194
A K G + V+ ++KG ++ G PLH AA G +++ L+ KGA + + K+
Sbjct: 9 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 68
Query: 195 LAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALH 232
+ PL A H + ++L+ GA D LTAL
Sbjct: 69 ITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALE 106
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 42/101 (41%)
Query: 683 QEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFT 742
+ G D + G V+ + G PLH A ++ + + GA+I+ K T
Sbjct: 11 KNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHIT 70
Query: 743 PLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQ 783
PL A + G ++ V+ L+ GA+ G T L Q
Sbjct: 71 PLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATDNQ 111
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 751 GQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNA 801
G L+ V+ V G +VN T G PLH A+ G++ I++ LL GA NA
Sbjct: 13 GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA 63
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Query: 324 GASIAATTESGLTPLHVASFMGCMNIAIFLLQAGA---APDTATVRGETPLHLAARANQT 380
G + T E G PLH A+ G + I FLL GA APD + TPL A
Sbjct: 25 GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHI---TPLLSAVYEGHV 81
Query: 381 DIVRILLRNGASVDARAREDQTPLH 405
V++LL GA + + T L
Sbjct: 82 SCVKLLLSKGADKTVKGPDGLTALE 106
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 469 LGNGDIASL--LLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGF 526
L NGD+ + + G V+ + G LH +A GQ E+ L GA I A K
Sbjct: 10 LKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHI 69
Query: 527 TPLHLAAKYGRMKIAQMLLQKDA 549
TPL A G + ++LL K A
Sbjct: 70 TPLLSAVYEGHVSCVKLLLSKGA 92
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 43/98 (43%)
Query: 168 AARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDY 227
A ++G + + + KG + + G PLH A+ L+ GA ++ +
Sbjct: 9 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 68
Query: 228 LTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLH 265
+T L A + GHV K LL + AD + +G T L
Sbjct: 69 ITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALE 106
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Query: 285 KTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFM 344
K + + D N G PLH A + +++E LL GA I A + +TPL A +
Sbjct: 19 KDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE 78
Query: 345 GCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLR 388
G ++ LL GA TV+G L A A ++ LL+
Sbjct: 79 GHVSCVKLLLSKGA---DKTVKGPDGL-TALEATDNQAIKALLQ 118
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 41/102 (40%), Gaps = 8/102 (7%)
Query: 238 GHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNAR 297
G + K + + D N G PLH A + C + + + LL + AD NA
Sbjct: 13 GDLDEVKDYVAKGEDVNRTLEGGRKPLHYA--------ADCGQLEILEFLLLKGADINAP 64
Query: 298 ALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLH 339
+ TPL A + V+LLL GA GLT L
Sbjct: 65 DKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALE 106
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 39/98 (39%)
Query: 648 AAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNG 707
A K +D + N + G PLH +A G ++ L+ GA ++ K+
Sbjct: 9 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 68
Query: 708 LTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLH 745
+TPL E V+ + + GA+ G T L
Sbjct: 69 ITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALE 106
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 39/98 (39%)
Query: 582 AAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNG 641
A K G + + + K V+ + G PLH A+ + LL +GA +A K+
Sbjct: 9 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 68
Query: 642 YTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLH 679
TPL A + + LL A + G T L
Sbjct: 69 ITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALE 106
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Query: 100 YMAAQENHD-GVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKT 158
+M A +N D V+ ++KG + E PLH A G++ ++E L+ KGA+I A
Sbjct: 11 FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD 70
Query: 159 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGL 195
+ +TPL A GH + + +L+ KGA K +GL
Sbjct: 71 KHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGL 107
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 6/110 (5%)
Query: 54 SLSNTKLEVSLSNTKFEATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRY 113
S+ + + +L N G + K V G +N G PL+ AA ++ +
Sbjct: 5 SMCDKEFMWALKN------GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEF 58
Query: 114 LLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLT 163
LL KG + +H+ITPL A G V+ V+LL+SKGA+ K DGLT
Sbjct: 59 LLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLT 108
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%)
Query: 730 GAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLII 789
G +++ + G PLH A+ GQL ++ +L+ GA++NA TPL A +G V +
Sbjct: 30 GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCV 89
Query: 790 DLLLGAGAQ 798
LLL GA
Sbjct: 90 KLLLSKGAD 98
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 565 GASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVA 624
G + T + G PLH AA G+++I + LL K A +++ K+ +TPL A + H +
Sbjct: 30 GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCV 89
Query: 625 LLLLDRGASPHAVAKNGYTPLHIAAKKNQ 653
LLL +GA +G T A NQ
Sbjct: 90 KLLLSKGADKTVKGPDGLTAFE--ATDNQ 116
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 38/80 (47%)
Query: 630 RGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDM 689
+G + + G PLH AA Q++I LL A NA K TPL + EGH
Sbjct: 29 KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSC 88
Query: 690 SSLLIEHGATVSHQAKNGLT 709
LL+ GA + + +GLT
Sbjct: 89 VKLLLSKGADKTVKGPDGLT 108
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 21/123 (17%)
Query: 505 DEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTES 564
DEV + + G + T + G PLH AA G+++I + LL K
Sbjct: 21 DEVKDYVAK-GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK----------------- 62
Query: 565 GASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVA 624
GA I A K TPL A G + ++LL K A +G +G+T D+Q +
Sbjct: 63 GADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEAT---DNQAIK 119
Query: 625 LLL 627
LL
Sbjct: 120 ALL 122
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 33/72 (45%)
Query: 426 GETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASV 485
G PLH AA Q +I+ LL GA ++A + TPL A G+ LLL GA
Sbjct: 40 GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADK 99
Query: 486 DAPTKDGYTALH 497
DG TA
Sbjct: 100 TVKGPDGLTAFE 111
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 47/98 (47%)
Query: 135 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNG 194
A K G + V+ ++KG ++ G PLH AA G +++ L+ KGA + + K+
Sbjct: 14 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 73
Query: 195 LAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALH 232
+ PL A H + ++L+ GA D LTA
Sbjct: 74 ITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFE 111
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 39/95 (41%)
Query: 433 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDG 492
A + D V+ + G V+ + PLH A+ G +I LL GA ++AP K
Sbjct: 14 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 73
Query: 493 YTALHISAKEGQDEVASILTESGASITATTKKGFT 527
T L + EG +L GA T G T
Sbjct: 74 ITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLT 108
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 53/126 (42%), Gaps = 4/126 (3%)
Query: 263 PLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLK 322
PL C K + + K + + D N G PLH A + +++E LL
Sbjct: 2 PLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLL 61
Query: 323 YGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDI 382
GA I A + +TPL A + G ++ LL GA TV+G L A A
Sbjct: 62 KGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGA---DKTVKGPDGL-TAFEATDNQA 117
Query: 383 VRILLR 388
++ LL+
Sbjct: 118 IKALLQ 123
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 751 GQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNA 801
G L+ V+ V G +VN T G PLH A+ G++ I++ LL GA NA
Sbjct: 18 GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA 68
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 41/101 (40%)
Query: 683 QEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFT 742
+ G D + G V+ + G PLH A ++ + + GA+I+ K T
Sbjct: 16 KNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHIT 75
Query: 743 PLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQ 783
PL A + G ++ V+ L+ GA+ G T Q
Sbjct: 76 PLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQ 116
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 469 LGNGDIASL--LLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGF 526
L NGD+ + + G V+ + G LH +A GQ E+ L GA I A K
Sbjct: 15 LKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHI 74
Query: 527 TPLHLAAKYGRMKIAQMLLQKDA 549
TPL A G + ++LL K A
Sbjct: 75 TPLLSAVYEGHVSCVKLLLSKGA 97
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 324 GASIAATTESGLTPLHVASFMGCMNIAIFLLQAGA---APDTATVRGETPLHLAARANQT 380
G + T E G PLH A+ G + I FLL GA APD + TPL A
Sbjct: 30 GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHI---TPLLSAVYEGHV 86
Query: 381 DIVRILLRNGAS 392
V++LL GA
Sbjct: 87 SCVKLLLSKGAD 98
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 42/95 (44%)
Query: 168 AARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDY 227
A ++G + + + KG + + G PLH A+ L+ GA ++ +
Sbjct: 14 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 73
Query: 228 LTALHVASHCGHVRVAKTLLDRKADPNARALNGFT 262
+T L A + GHV K LL + AD + +G T
Sbjct: 74 ITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLT 108
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 231 LHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDR 290
LH A+ CG + + + LL + AD NA + TPL A + HV K LL +
Sbjct: 44 LHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE--------GHVSCVKLLLSK 95
Query: 291 KADPNARALNGFT 303
AD + +G T
Sbjct: 96 GADKTVKGPDGLT 108
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 367 GETPLHLAARANQTDIVRILLRNGASVDARAREDQTPL 404
G PLH AA Q +I+ LL GA ++A + TPL
Sbjct: 40 GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 77
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 36/85 (42%)
Query: 648 AAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNG 707
A K +D + N + G PLH +A G ++ L+ GA ++ K+
Sbjct: 14 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 73
Query: 708 LTPLHLCAQEDKVNVATITMFNGAE 732
+TPL E V+ + + GA+
Sbjct: 74 ITPLLSAVYEGHVSCVKLLLSKGAD 98
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 64/122 (52%)
Query: 287 LLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGC 346
L +R D +AR +G TPL +A + ++E L+ A + A + G + LH A+ +
Sbjct: 1 LRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 60
Query: 347 MNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHV 406
++ A+ LL+ GA D + ETPL LAAR + ++LL + A+ D D+ P +
Sbjct: 61 VDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 120
Query: 407 AS 408
A
Sbjct: 121 AQ 122
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Query: 446 LRNGAS-VDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQ 504
LRN A+ +DAR + TPL +A+RL + L+ A V+A G +ALH +A
Sbjct: 1 LRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 60
Query: 505 DEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQ 546
+ A +L ++GA+ K TPL LAA+ G + A++LL
Sbjct: 61 VDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLD 102
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 64/109 (58%), Gaps = 10/109 (9%)
Query: 387 LRNGAS-VDARAREDQTPLHVASRLRRF--------SSASQSALTRVRGETPLHLAARAN 437
LRN A+ +DAR + TPL +A+RL S A +A+ + G++ LH AA N
Sbjct: 1 LRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDL-GKSALHWAAAVN 59
Query: 438 QTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVD 486
D +LL+NGA+ D + +++TPL +A+R G+ + A +LL H A+ D
Sbjct: 60 NVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRD 108
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 62/135 (45%)
Query: 561 LTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDH 620
L + A G TPL LAA+ + + L+ A V++ G + LH A+ ++
Sbjct: 1 LRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 60
Query: 621 QNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHL 680
+ A++LL GA+ TPL +AA++ + A LL++ A + P +
Sbjct: 61 VDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 120
Query: 681 SAQEGHTDMSSLLIE 695
+ + H D+ LL E
Sbjct: 121 AQERMHHDIVRLLDE 135
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 59/135 (43%)
Query: 627 LLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGH 686
L +R A +G TPL +AA+ + L+ +A NA G + LH +A +
Sbjct: 1 LRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 60
Query: 687 TDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHI 746
D + +L+++GA Q TPL L A+E A + + + A D P I
Sbjct: 61 VDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 120
Query: 747 ASHFGQLNMVRYLVE 761
A ++VR L E
Sbjct: 121 AQERMHHDIVRLLDE 135
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 60/119 (50%)
Query: 426 GETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASV 485
G TPL LAAR ++ L+ + A V+A ++ LH A+ + N D A +LL++GA+
Sbjct: 15 GTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK 74
Query: 486 DAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
D T L ++A+EG E A +L + A+ T P +A + I ++L
Sbjct: 75 DMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 133
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 7/133 (5%)
Query: 320 LLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQ 379
L + A G TPL +A+ + + L+ + A + G++ LH AA N
Sbjct: 1 LRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 60
Query: 380 TDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSA-------SQSALTRVRGETPLHL 432
D +LL+NGA+ D + +++TPL +A+R + +A + +T P +
Sbjct: 61 VDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 120
Query: 433 AARANQTDIVRIL 445
A DIVR+L
Sbjct: 121 AQERMHHDIVRLL 133
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 52/102 (50%)
Query: 147 LISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDH 206
L ++ +++A+ DG TPL AAR + +++ LI A + + G + LH A+ ++
Sbjct: 1 LRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 60
Query: 207 EAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLD 248
A VL+ +GA D T L +A+ G AK LLD
Sbjct: 61 VDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLD 102
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 55/99 (55%)
Query: 601 VDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTL 660
+D++ +G TPL +A+ + + L++ A +AV G + LH AA N +D A L
Sbjct: 8 LDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 67
Query: 661 LEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGAT 699
L+ A + ++ TPL L+A+EG + + +L++H A
Sbjct: 68 LKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFAN 106
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 58/141 (41%), Gaps = 8/141 (5%)
Query: 246 LLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPL 305
L +R D +AR +G TPL +A + + + L++ AD NA G + L
Sbjct: 1 LRNRATDLDARMHDGTTPLILAAR--------LALEGMLEDLINSHADVNAVDDLGKSAL 52
Query: 306 HIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATV 365
H A N +LLK GA+ TPL +A+ G A LL A D
Sbjct: 53 HWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDH 112
Query: 366 RGETPLHLAARANQTDIVRIL 386
P +A DIVR+L
Sbjct: 113 MDRLPRDIAQERMHHDIVRLL 133
Score = 36.6 bits (83), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 60/150 (40%), Gaps = 17/150 (11%)
Query: 478 LLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGR 537
L +DA DG T L ++A+ + + L S A + A G + LH AA
Sbjct: 1 LRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 60
Query: 538 MKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQK 597
+ A +LL+ +GA+ K TPL LAA+ G + A++LL
Sbjct: 61 VDAAVVLLK-----------------NGANKDMQNNKEETPLFLAAREGSYETAKVLLDH 103
Query: 598 DAPVDSQGKNGVTPLHVASHYDHQNVALLL 627
A D P +A H ++ LL
Sbjct: 104 FANRDITDHMDRLPRDIAQERMHHDIVRLL 133
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 732 EIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDL 791
++D G TPL +A+ M+ L+ + A+VNA +LG + LH A+ V +
Sbjct: 7 DLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVV 66
Query: 792 LLGAGAQPNATTN-----LFCCA 809
LL GA + N LF A
Sbjct: 67 LLKNGANKDMQNNKEETPLFLAA 89
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 57/125 (45%)
Query: 668 NAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITM 727
+A G TPL L+A+ M LI A V+ G + LH A + V+ A + +
Sbjct: 9 DARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLL 68
Query: 728 FNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVL 787
NGA D TPL +A+ G + L+++ AN + T ++ P A ++
Sbjct: 69 KNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHD 128
Query: 788 IIDLL 792
I+ LL
Sbjct: 129 IVRLL 133
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 14/107 (13%)
Query: 706 NGLTPLHLCAQ-------EDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRY 758
+G TPL L A+ ED +N + A+++ V G + LH A+ ++
Sbjct: 14 DGTTPLILAARLALEGMLEDLIN-------SHADVNAVDDLGKSALHWAAAVNNVDAAVV 66
Query: 759 LVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNL 805
L++NGAN + N TPL A+++G +LL A + T ++
Sbjct: 67 LLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHM 113
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 51/120 (42%)
Query: 94 NGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGAN 153
+G TPL +AA+ +G++ L++ + + + LH A V +L+ GAN
Sbjct: 14 DGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 73
Query: 154 IEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVL 213
+ + TPL AAR G +L++ A P +A + H R+L
Sbjct: 74 KDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 133
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 130 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 189
TPL +A + M+E LI+ A++ A G + LH AA + + +L++ GA
Sbjct: 17 TPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM 76
Query: 190 KTKNGLAPLHMAS-QGDHEAATRVLIYHGAGVD 221
+ PL +A+ +G +E A +VL+ H A D
Sbjct: 77 QNNKEETPLFLAAREGSYETA-KVLLDHFANRD 108
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%)
Query: 81 LVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGK 140
L+ NGA ++Q+ TPL++AA+E + LL N+ + + P +A +
Sbjct: 67 LLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH 126
Query: 141 VAMVELL 147
+V LL
Sbjct: 127 HDIVRLL 133
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 47/108 (43%)
Query: 75 EEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHV 134
E + + L+++ A +N G + L+ AA N+ LL G N+ + TPL +
Sbjct: 28 EGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFL 87
Query: 135 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIE 182
A + G ++L+ AN + P A H +++ +L E
Sbjct: 88 AAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDE 135
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 93 LNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGA 152
LN L AA VV+ + + + + E IT LH A ++V+ LI+ GA
Sbjct: 19 LNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGA 78
Query: 153 NIEAKTRDGLTPLHCAARSGHDNVIDI-LIEKGAALYSKT 191
N+ + G TPLHCAA S +D VI + L++ GAA+++ T
Sbjct: 79 NVNSPDSHGWTPLHCAA-SCNDTVICMALVQHGAAIFATT 117
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 3/118 (2%)
Query: 111 VRYLLSKGGNQTLATEHNITPLHV---ACKWGKVAMVELLISKGANIEAKTRDGLTPLHC 167
+R +L K G+ A + PL + A G++ +V+ + + + +G+T LH
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60
Query: 168 AARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITV 225
A + +++D LI GA + S +G PLH A+ + L+ HGA + T+
Sbjct: 61 AICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTL 118
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%)
Query: 315 KVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLA 374
+VV+ +K + E G+T LH A +I FL+ AGA ++ G TPLH A
Sbjct: 35 EVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCA 94
Query: 375 ARANQTDIVRILLRNGASVDARARED 400
A N T I L+++GA++ A D
Sbjct: 95 ASCNDTVICMALVQHGAAIFATTLSD 120
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%)
Query: 293 DPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIF 352
DP+ G T LH A Y +V+ L+ GA++ + G TPLH A+ I +
Sbjct: 46 DPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMA 105
Query: 353 LLQAGAA 359
L+Q GAA
Sbjct: 106 LVQHGAA 112
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%)
Query: 738 KAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGA 797
+ G T LH A ++V +L+ GANVN+ + G+TPLH A+ +I L+ GA
Sbjct: 52 EEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGA 111
Query: 798 QPNATT 803
ATT
Sbjct: 112 AIFATT 117
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 52/115 (45%)
Query: 408 SRLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVAS 467
S LR+ S ++ R+ L AA + ++V+ ++ E T LH A
Sbjct: 3 SVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAI 62
Query: 468 RLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATT 522
N I L+ GA+V++P G+T LH +A + L + GA+I ATT
Sbjct: 63 CGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATT 117
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Query: 559 SILTESGASITATTKKGFTPLHL---AAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVA 615
S+L ++G+ A + PL L AA G +++ Q +++ + G+T LH A
Sbjct: 3 SVLRKAGSPRKARRAR-LNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNA 61
Query: 616 SHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNA 665
+ ++ L+ GA+ ++ +G+TPLH AA N I L+++ A
Sbjct: 62 ICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGA 111
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 3/113 (2%)
Query: 442 VRILLRNGASVDARAREDQTPLHV---ASRLGNGDIASLLLQHGASVDAPTKDGYTALHI 498
+R +LR S R PL + A+ G ++ ++ P ++G TALH
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60
Query: 499 SAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPV 551
+ + L +GA++ + G+TPLH AA I L+Q A +
Sbjct: 61 AICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAI 113
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 69/165 (41%), Gaps = 22/165 (13%)
Query: 238 GHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNAR 297
G + V + + DP+ G T LH A Y + L+ A+ N+
Sbjct: 32 GELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYS--------IVDFLITAGANVNSP 83
Query: 298 ALNGFTPLHIACKKNRYKVVELLLKYGASIAATTES-GLTPLH-----------VASFMG 345
+G+TPLH A N + L+++GA+I ATT S G T A+++
Sbjct: 84 DSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLA 143
Query: 346 CMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNG 390
+ ++ L+ +GA E L+ R ++ V +L R+G
Sbjct: 144 DVEQSMGLMNSGAVYALWDYSAEFGDELSFREGES--VTVLRRDG 186
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Query: 634 PHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLL 693
P + G T LH A I L+ A N+ G+TPLH +A T + L
Sbjct: 47 PSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMAL 106
Query: 694 IEHGATV-SHQAKNGLTPLHLC 714
++HGA + + +G T C
Sbjct: 107 VQHGAAIFATTLSDGATAFEKC 128
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 44/97 (45%)
Query: 537 RMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQ 596
R ++ ++L DA + + +V + + ++G T LH A I L+
Sbjct: 16 RARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLIT 75
Query: 597 KDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGAS 633
A V+S +G TPLH A+ + + + L+ GA+
Sbjct: 76 AGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAA 112
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 3/110 (2%)
Query: 627 LLDRGASPHAVAKNGYTPLHI---AAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQ 683
+L + SP + PL + AA ++++ ++ P+ ++ G T LH +
Sbjct: 4 VLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAIC 63
Query: 684 EGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEI 733
+ + LI GA V+ +G TPLH A + + + +GA I
Sbjct: 64 GANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAI 113
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 1/96 (1%)
Query: 72 TGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITP 131
TG+ EV + V + + G T L+ A + +V +L++ G N H TP
Sbjct: 31 TGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTP 90
Query: 132 LHVACKWGKVAMVELLISKGANIEAKT-RDGLTPLH 166
LH A + L+ GA I A T DG T
Sbjct: 91 LHCAASCNDTVICMALVQHGAAIFATTLSDGATAFE 126
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 3/115 (2%)
Query: 659 TLLEYNAKPNAESKAGFTPLHL---SAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCA 715
++L P +A PL L +A G ++ ++ S + G+T LH
Sbjct: 3 SVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAI 62
Query: 716 QEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATT 770
++ + GA ++ G+TPLH A+ + LV++GA + ATT
Sbjct: 63 CGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATT 117
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 43/103 (41%), Gaps = 6/103 (5%)
Query: 426 GETPLHLAARANQTDIVRILLRNGASVDARARED-QTPLHVAS--RLGNGDIASLLLQHG 482
G TPLH AA N T I L+++GA++ A D T R G D A+ L
Sbjct: 87 GWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVE 146
Query: 483 ASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKG 525
S+ AL + E DE++ G S+T + G
Sbjct: 147 QSMGLMNSGAVYALWDYSAEFGDELS---FREGESVTVLRRDG 186
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 557 VASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPV 601
+ L +GA++ + G+TPLH AA I L+Q A +
Sbjct: 69 IVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAI 113
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 14/90 (15%)
Query: 751 GQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNA-----TTNL 805
G+L +V+ V+ + + G T LH A I+D L+ AGA N+ T L
Sbjct: 32 GELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPL 91
Query: 806 FCCATI--------LVKNGAEIDPVTKLSD 827
C A+ LV++GA I T LSD
Sbjct: 92 HCAASCNDTVICMALVQHGAAIF-ATTLSD 120
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 76/186 (40%), Gaps = 32/186 (17%)
Query: 366 RGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVR 425
+G+T LH+A +V +L+ NGA V A A D F ++
Sbjct: 100 KGQTALHIAIERRNXTLVTLLVENGADVQAAANGD------------FFKKTKGRPGFYF 147
Query: 426 GETPLHLAARANQTDIVRILLRNG---ASVDARAREDQTPLHVASRLGNGDIASLLLQHG 482
GE PL LAA NQ IV+ LL+N A + AR T LH + + + +
Sbjct: 148 GELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKF--- 204
Query: 483 ASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQ 542
Y + I + + L + T +KG TPL LAA G++ +
Sbjct: 205 ------VTSXYNEILI--------LGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLA 250
Query: 543 MLLQKD 548
+LQ++
Sbjct: 251 YILQRE 256
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 69/189 (36%), Gaps = 60/189 (31%)
Query: 470 GNGDIASLLLQHGASVD-------APTKDGY----TALHISAKEGQDEVASILTESGASI 518
G D +LLL D A D Y TALHI+ + + ++L E+GA +
Sbjct: 68 GQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNXTLVTLLVENGADV 127
Query: 519 TATTKKGF--------------TPLHLAAKYGRMKIAQMLLQK----------------- 547
A F PL LAA ++ I + LLQ
Sbjct: 128 QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTV 187
Query: 548 --------DAPVDSQGKVASILTES---GASI-------TATTKKGFTPLHLAAKYGRMK 589
D VD+ V S E GA + T +KG TPL LAA G++
Sbjct: 188 LHALVEVADNTVDNTKFVTSXYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIG 247
Query: 590 IAQMLLQKD 598
+ +LQ++
Sbjct: 248 VLAYILQRE 256
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 22/108 (20%)
Query: 674 GFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEI 733
G T LH++ + + + +LL+E+GA V A NG F +
Sbjct: 101 GQTALHIAIERRNXTLVTLLVENGADV-QAAANG------------------DFFKKTKG 141
Query: 734 DPVTKAGFTPLHIASHFGQLNMVRYLVENG---ANVNATTNLGYTPLH 778
P G PL +A+ QL +V++L++N A+++A ++G T LH
Sbjct: 142 RPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLH 189
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 15/87 (17%)
Query: 727 MFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTN--------------L 772
N + D K G T LHIA +V LVENGA+V A N
Sbjct: 89 FVNASYTDSYYK-GQTALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGFYF 147
Query: 773 GYTPLHQASQQGRVLIIDLLLGAGAQP 799
G PL A+ ++ I+ LL QP
Sbjct: 148 GELPLSLAACTNQLAIVKFLLQNSWQP 174
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 2/126 (1%)
Query: 635 HAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLI 694
H + + L AA + Q++ LLE A PNA ++ G P+ + G ++ LL+
Sbjct: 6 HMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLL 64
Query: 695 EHGATVSHQAKNGLT-PLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQL 753
HGA + LT P+H A+E ++ + GA +D G P+ +A G
Sbjct: 65 LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHR 124
Query: 754 NMVRYL 759
++ RYL
Sbjct: 125 DIARYL 130
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 51/109 (46%), Gaps = 2/109 (1%)
Query: 279 NHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLT-P 337
V + LL+ ADPNA G P+ + + +V ELLL +GA + LT P
Sbjct: 23 GQVETVRQLLEAGADPNALNRFGRRPIQVMMMGS-AQVAELLLLHGAEPNCADPATLTRP 81
Query: 338 LHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRIL 386
+H A+ G ++ + L +AGA D G P+ LA DI R L
Sbjct: 82 VHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYL 130
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 2/116 (1%)
Query: 430 LHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPT 489
L AA Q + VR LL GA +A R + P+ V +G+ +A LLL HGA +
Sbjct: 16 LATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVAELLLLHGAEPNCAD 74
Query: 490 KDGYT-ALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
T +H +A+EG + +L +GA + G P+ LA + G IA+ L
Sbjct: 75 PATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYL 130
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 2/105 (1%)
Query: 305 LHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTAT 364
L A + + + V LL+ GA A G P+ V MG +A LL GA P+ A
Sbjct: 16 LATAAARGQVETVRQLLEAGADPNALNRFGRRPIQV-MMMGSAQVAELLLLHGAEPNCAD 74
Query: 365 VRGET-PLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVAS 408
T P+H AAR D + +L R GA +D + P+ +A
Sbjct: 75 PATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAE 119
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 744 LHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 800
L A+ GQ+ VR L+E GA+ NA G P+ Q G + +LLL GA+PN
Sbjct: 16 LATAAARGQVETVRQLLEAGADPNALNRFGRRPI-QVMMMGSAQVAELLLLHGAEPN 71
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 54/127 (42%), Gaps = 17/127 (13%)
Query: 371 LHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETP- 429
L AA Q + VR LL GA +A R + P+ V SA + L + G P
Sbjct: 16 LATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM----MGSAQVAELLLLHGAEPN 71
Query: 430 ----------LHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLL 479
+H AAR D + +L R GA +D + P+ +A G+ DIA L
Sbjct: 72 CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYL- 130
Query: 480 QHGASVD 486
H A+ D
Sbjct: 131 -HAATGD 136
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 45/116 (38%), Gaps = 2/116 (1%)
Query: 99 LYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKT 158
L AA VR LL G + P+ V G + ELL+ GA
Sbjct: 16 LATAAARGQVETVRQLLEAGADPNALNRFGRRPIQV-MMMGSAQVAELLLLHGAEPNCAD 74
Query: 159 RDGLT-PLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVL 213
LT P+H AAR G + + +L GA L G P+ +A + H R L
Sbjct: 75 PATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYL 130
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 2/116 (1%)
Query: 645 LHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQA 704
L AA + +++ LLE A PNA + G P+ + G ++ LL+ HGA +
Sbjct: 16 LATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSARVAELLLLHGAEPNCAD 74
Query: 705 KNGLT-PLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYL 759
LT P+H A+E ++ + GA +D G P+ +A G ++ RYL
Sbjct: 75 PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 2/103 (1%)
Query: 285 KTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLT-PLHVASF 343
+ LL+ A+PNA G P+ + + +V ELLL +GA + LT P+H A+
Sbjct: 29 RALLEAGANPNAPNSYGRRPIQVMMMGS-ARVAELLLLHGAEPNCADPATLTRPVHDAAR 87
Query: 344 MGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRIL 386
G ++ + L +AGA D G P+ LA D+ R L
Sbjct: 88 EGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 2/116 (1%)
Query: 430 LHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPT 489
L AA + + VR LL GA+ +A + P+ V +G+ +A LLL HGA +
Sbjct: 16 LATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCAD 74
Query: 490 KDGYT-ALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
T +H +A+EG + +L +GA + G P+ LA + G +A+ L
Sbjct: 75 PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 2/116 (1%)
Query: 579 LHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVA 638
L AA GR++ + LL+ A ++ G P+ V VA LLL GA P+
Sbjct: 16 LATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQV-MMMGSARVAELLLLHGAEPNCAD 74
Query: 639 KNGYT-PLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLL 693
T P+H AA++ +D L A+ + G P+ L+ + GH D++ L
Sbjct: 75 PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 733 IDPVTKAGFTP----LHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLI 788
++P + P L A+ G++ VR L+E GAN NA + G P+ Q G +
Sbjct: 1 MEPAAGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPI-QVMMMGSARV 59
Query: 789 IDLLLGAGAQPN 800
+LLL GA+PN
Sbjct: 60 AELLLLHGAEPN 71
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 44/104 (42%), Gaps = 2/104 (1%)
Query: 111 VRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLT-PLHCAA 169
VR LL G N + P+ V G + ELL+ GA LT P+H AA
Sbjct: 28 VRALLEAGANPNAPNSYGRRPIQVMMM-GSARVAELLLLHGAEPNCADPATLTRPVHDAA 86
Query: 170 RSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVL 213
R G + + +L GA L + G P+ +A + H R L
Sbjct: 87 REGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 59/141 (41%), Gaps = 26/141 (18%)
Query: 338 LHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARA 397
L A+ G + LL+AGA P+ G P+ + + + +LL +GA +
Sbjct: 16 LATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSAR-VAELLLLHGAEPN--- 71
Query: 398 REDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAR 457
A + LTR P+H AAR D + +L R GA +D R
Sbjct: 72 -----------------CADPATLTR-----PVHDAAREGFLDTLVVLHRAGARLDVRDA 109
Query: 458 EDQTPLHVASRLGNGDIASLL 478
+ P+ +A LG+ D+A L
Sbjct: 110 WGRLPVDLAEELGHRDVARYL 130
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 76/182 (41%), Gaps = 29/182 (15%)
Query: 676 TPLHLSAQEGH----TDMSSLLIEHGAT-----------VSHQAKNGLTPLHLCAQEDKV 720
TP L +EG TD S G + V+ QA++ PLH A+ +
Sbjct: 27 TPDELYIEEGDIIYITDXSDTNWWKGTSKGRTGLIPSNYVAEQAESIDNPLHEAAKRGNL 86
Query: 721 NVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLV-ENGANVNATTNLGYTPLHQ 779
+ + N ++ + KAG T L+ A H G ++V L + +N LG T LH
Sbjct: 87 SWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHA 146
Query: 780 ASQQGRVLIIDLLLGAGAQP-----------NATTNLFCCATILVKNGAEIDPVTKLSDE 828
A+ +G I+ LLL GA+ + TN C + + K G D V LS+
Sbjct: 147 AAWKGYADIVQLLLAKGARTDLRNIEKKLAFDXATNAACASLLKKKQGT--DAVRTLSNA 204
Query: 829 HE 830
+
Sbjct: 205 ED 206
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 462 PLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEG-QDEVASILTESGASITA 520
PLH A++ GN L + V+ K G TAL+ + G +D V + T+ +
Sbjct: 76 PLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQ 135
Query: 521 TTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVD 552
K G T LH AA G I Q+LL K A D
Sbjct: 136 QNKLGDTALHAAAWKGYADIVQLLLAKGARTD 167
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 644 PLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDM-SSLLIEHGATVSH 702
PLH AAK+ + L+ N KAG T L+ + GH D+ L + ++
Sbjct: 76 PLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQ 135
Query: 703 QAKNGLTPLHLCAQEDKVNVATITMFNGAEID 734
Q K G T LH A + ++ + + GA D
Sbjct: 136 QNKLGDTALHAAAWKGYADIVQLLLAKGARTD 167
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 44/102 (43%), Gaps = 4/102 (3%)
Query: 578 PLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDR-GASPHA 636
PLH AAK G + + L V+ K G T L+ A H H+++ L + +
Sbjct: 76 PLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQ 135
Query: 637 VAKNGYTPLHIAAKKNQMDIATTLLEYNAKP---NAESKAGF 675
K G T LH AA K DI LL A+ N E K F
Sbjct: 136 QNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAF 177
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 57/143 (39%), Gaps = 18/143 (12%)
Query: 304 PLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLL-QAGAAPDT 362
PLH A K+ + L + ++G T L+ A G +I L Q +
Sbjct: 76 PLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQ 135
Query: 363 ATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALT 422
G+T LH AA DIV++LL GA D R E + A+ ++A S L
Sbjct: 136 QNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDXAT-----NAACASLLK 190
Query: 423 RVRGETPLHLAARANQTDIVRIL 445
+ +G TD VR L
Sbjct: 191 KKQG------------TDAVRTL 201
Score = 36.2 bits (82), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 49/119 (41%), Gaps = 11/119 (9%)
Query: 368 ETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASR------LRRFSSASQSAL 421
+ PLH AA+ +R L N V+ + T L+ A + + L
Sbjct: 74 DNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIEL 133
Query: 422 TRVR--GETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLL 478
+ G+T LH AA DIV++LL GA D R E + A+ N ASLL
Sbjct: 134 NQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDXAT---NAACASLL 189
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 98 PLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAK 157
PL+ AA+ + +R L + T L+ AC G +VE L ++ NIE
Sbjct: 76 PLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQ-PNIELN 134
Query: 158 TRD--GLTPLHCAARSGHDNVIDILIEKGA 185
++ G T LH AA G+ +++ +L+ KGA
Sbjct: 135 QQNKLGDTALHAAAWKGYADIVQLLLAKGA 164
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 9/96 (9%)
Query: 82 VDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNI--TPLHVACKWG 139
+DN +N G T LY A H +V L ++ N L ++ + T LH A G
Sbjct: 93 LDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQP-NIELNQQNKLGDTALHAAAWKG 151
Query: 140 KVAMVELLISKGA-----NIEAK-TRDGLTPLHCAA 169
+V+LL++KGA NIE K D T CA+
Sbjct: 152 YADIVQLLLAKGARTDLRNIEKKLAFDXATNAACAS 187
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 46/128 (35%), Gaps = 23/128 (17%)
Query: 475 ASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAK 534
++ + + S+D P LH +AK G ++ + K G T L+ A
Sbjct: 63 SNYVAEQAESIDNP-------LHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACH 115
Query: 535 YGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 594
G I + L T+ + K G T LH AA G I Q+L
Sbjct: 116 GGHKDIVEXLF----------------TQPNIELNQQNKLGDTALHAAAWKGYADIVQLL 159
Query: 595 LQKDAPVD 602
L K A D
Sbjct: 160 LAKGARTD 167
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 9/96 (9%)
Query: 231 LHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDR 290
LH A+ G++ + LD + N G T L+ AC H H + + L +
Sbjct: 77 LHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWAC--------HGGHKDIVEXLFTQ 128
Query: 291 -KADPNARALNGFTPLHIACKKNRYKVVELLLKYGA 325
+ N + G T LH A K +V+LLL GA
Sbjct: 129 PNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGA 164
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 2/116 (1%)
Query: 645 LHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQA 704
L AA + +++ LLE A PNA + G P+ + G ++ LL+ HGA +
Sbjct: 16 LATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQVMMM-GSARVAELLLLHGAEPNCAD 74
Query: 705 KNGLT-PLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYL 759
LT P+H A+E ++ + GA +D G P+ +A G ++ RYL
Sbjct: 75 PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
Query: 285 KTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLT-PLHVASF 343
+ LL+ A PNA G P+ + + +V ELLL +GA + LT P+H A+
Sbjct: 29 RALLEAGALPNAPNSYGRRPIQVMMMGS-ARVAELLLLHGAEPNCADPATLTRPVHDAAR 87
Query: 344 MGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRIL 386
G ++ + L +AGA D G P+ LA D+ R L
Sbjct: 88 EGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 2/116 (1%)
Query: 430 LHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPT 489
L AA + + VR LL GA +A + P+ V +G+ +A LLL HGA +
Sbjct: 16 LATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCAD 74
Query: 490 KDGYT-ALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
T +H +A+EG + +L +GA + G P+ LA + G +A+ L
Sbjct: 75 PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 2/116 (1%)
Query: 579 LHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVA 638
L AA GR++ + LL+ A ++ G P+ V VA LLL GA P+
Sbjct: 16 LATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQV-MMMGSARVAELLLLHGAEPNCAD 74
Query: 639 KNGYT-PLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLL 693
T P+H AA++ +D L A+ + G P+ L+ + GH D++ L
Sbjct: 75 PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 59/141 (41%), Gaps = 26/141 (18%)
Query: 338 LHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARA 397
L A+ G + LL+AGA P+ G P+ + + + +LL +GA +
Sbjct: 16 LATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQVMMMGSAR-VAELLLLHGAEPN--- 71
Query: 398 REDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAR 457
A + LTR P+H AAR D + +L R GA +D R
Sbjct: 72 -----------------CADPATLTR-----PVHDAAREGFLDTLVVLHRAGARLDVRDA 109
Query: 458 EDQTPLHVASRLGNGDIASLL 478
+ P+ +A LG+ D+A L
Sbjct: 110 WGRLPVDLAEELGHRDVARYL 130
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 733 IDPVTKAGFTP----LHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLI 788
++P + P L A+ G++ VR L+E GA NA + G P+ Q G +
Sbjct: 1 MEPAAGSSMEPSADWLATAAARGRVEEVRALLEAGALPNAPNSYGRRPI-QVMMMGSARV 59
Query: 789 IDLLLGAGAQPN 800
+LLL GA+PN
Sbjct: 60 AELLLLHGAEPN 71
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 43/104 (41%), Gaps = 2/104 (1%)
Query: 111 VRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLT-PLHCAA 169
VR LL G + P+ V G + ELL+ GA LT P+H AA
Sbjct: 28 VRALLEAGALPNAPNSYGRRPIQVMMM-GSARVAELLLLHGAEPNCADPATLTRPVHDAA 86
Query: 170 RSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVL 213
R G + + +L GA L + G P+ +A + H R L
Sbjct: 87 REGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 427 ETPLHLAAR-ANQTDI--VRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGA 483
E LHLA + ANQ + V +++NG +DA+A + T LH A+ D LLL+ A
Sbjct: 172 ELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRA 231
Query: 484 SVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKY 535
V + G TAL I+ K+ E +L ++ A A PLH+ +
Sbjct: 232 LVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFA------FPLHVDYSW 277
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%)
Query: 352 FLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASR 409
F++Q G D G T LH AA NQ D +++LL+ A V +T L +A +
Sbjct: 192 FIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARK 249
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 9/105 (8%)
Query: 579 LHLAAKYGR---MKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPH 635
LHLA K + + ++Q +D++ +G T LH A+ Y+ + LLL A
Sbjct: 175 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG 234
Query: 636 AVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHL 680
V + G T L IA KK+ + LLE A++ PLH+
Sbjct: 235 TVNEAGETALDIARKKHHKE-CEELLE-----QAQAGTFAFPLHV 273
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 132 LHVACKWGKVA---MVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALY 188
LH+A K A +V+ +I G +++AK DG T LH AA + + +L++ A +
Sbjct: 175 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG 234
Query: 189 SKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEIT--VDY 227
+ + G L +A + H+ +L AG VDY
Sbjct: 235 TVNEAGETALDIARKKHHKECEELLEQAQAGTFAFPLHVDY 275
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 53/125 (42%), Gaps = 30/125 (24%)
Query: 359 APDTATVRGETPLHLAAR-ANQTDI--VRILLRNGASVDARAREDQTPLHVASRLRRFSS 415
PD A E LHLA + ANQ + V +++NG +DA+A +
Sbjct: 164 GPD-AQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAAD---------------- 206
Query: 416 ASQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIA 475
G T LH AA NQ D +++LL+ A V +T L +A + + +
Sbjct: 207 ----------GNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECE 256
Query: 476 SLLLQ 480
LL Q
Sbjct: 257 ELLEQ 261
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 626 LLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEG 685
++ G A A +G T LH AA NQ D LL+ A ++AG T L ++ ++
Sbjct: 192 FIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKH 251
Query: 686 HTDMSSLLIEHGATVSHQAKNGLTPLHL 713
H + LL + QA PLH+
Sbjct: 252 HKECEELLEQ------AQAGTFAFPLHV 273
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 295 NARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVA 341
+A+A +G T LH A N+ ++LLLK A + E+G T L +A
Sbjct: 201 DAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 247
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 10/116 (8%)
Query: 294 PNARALNGFTPLHIACK---KNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIA 350
P+A+A LH+A K + +V+ +++ G + A G T LH A+ +
Sbjct: 165 PDAQAPEELV-LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCL 223
Query: 351 IFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHV 406
LL+ A T GET L +A + + + +L + A+A PLHV
Sbjct: 224 KLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQ------AQAGTFAFPLHV 273
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 427 ETPLHLAAR-ANQTDI--VRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGA 483
E LHLA + ANQ + V +++NG +DA+A + T LH A+ D LLL+ A
Sbjct: 191 ELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRA 250
Query: 484 SVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKY 535
V + G TAL I+ K+ E +L ++ A A PLH+ +
Sbjct: 251 LVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFA------FPLHVDYSW 296
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 9/143 (6%)
Query: 411 RRFSSASQSALTRVRGETPLH-LAARANQTDIVRILLRNGASVDARAREDQTPLHVASRL 469
RR + Q T + L L A AN D + L DA+A E+ LH+A ++
Sbjct: 146 RRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPL----PGPDAQAPEELV-LHLAVKV 200
Query: 470 GNG---DIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGF 526
N + ++Q+G +DA DG TALH +A Q + +L + A + + G
Sbjct: 201 ANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGE 260
Query: 527 TPLHLAAKYGRMKIAQMLLQKDA 549
T L +A K + ++L Q A
Sbjct: 261 TALDIARKKHHKECEELLEQAQA 283
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%)
Query: 352 FLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASR 409
F++Q G D G T LH AA NQ D +++LL+ A V +T L +A +
Sbjct: 211 FIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARK 268
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 132 LHVACKWGKVA---MVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALY 188
LH+A K A +V+ +I G +++AK DG T LH AA + + +L++ A +
Sbjct: 194 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG 253
Query: 189 SKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEIT--VDY 227
+ + G L +A + H+ +L AG VDY
Sbjct: 254 TVNEAGETALDIARKKHHKECEELLEQAQAGTFAFPLHVDY 294
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 53/125 (42%), Gaps = 30/125 (24%)
Query: 359 APDTATVRGETPLHLAAR-ANQTDI--VRILLRNGASVDARAREDQTPLHVASRLRRFSS 415
PD A E LHLA + ANQ + V +++NG +DA+A +
Sbjct: 183 GPD-AQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAAD---------------- 225
Query: 416 ASQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIA 475
G T LH AA NQ D +++LL+ A V +T L +A + + +
Sbjct: 226 ----------GNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECE 275
Query: 476 SLLLQ 480
LL Q
Sbjct: 276 ELLEQ 280
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 579 LHLAAKYGR---MKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPH 635
LHLA K + + ++Q +D++ +G T LH A+ Y+ + LLL A
Sbjct: 194 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG 253
Query: 636 AVAKNGYTPLHIAAKKNQMDIATTLLEYNA 665
V + G T L IA KK+ + L + A
Sbjct: 254 TVNEAGETALDIARKKHHKECEELLEQAQA 283
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 626 LLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEG 685
++ G A A +G T LH AA NQ D LL+ A ++AG T L ++ ++
Sbjct: 211 FIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKH 270
Query: 686 HTDMSSLLIEHGATVSHQAKNGLTPLHL 713
H + LL + QA PLH+
Sbjct: 271 HKECEELLEQ------AQAGTFAFPLHV 292
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 295 NARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVA 341
+A+A +G T LH A N+ ++LLLK A + E+G T L +A
Sbjct: 220 DAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 266
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 10/116 (8%)
Query: 294 PNARALNGFTPLHIACK---KNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIA 350
P+A+A LH+A K + +V+ +++ G + A G T LH A+ +
Sbjct: 184 PDAQAPEELV-LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCL 242
Query: 351 IFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHV 406
LL+ A T GET L +A + + + +L + A+A PLHV
Sbjct: 243 KLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQ------AQAGTFAFPLHV 292
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 53/125 (42%), Gaps = 5/125 (4%)
Query: 303 TPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDT 362
TPL A N E LL+ GA++ +G PLH A+ +G +A L+ GA
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA 296
Query: 363 ATVRGETPLHLAARANQTDIVRIL----LRNGASVDARAREDQTPLHVASRLRRFSSASQ 418
G PL +A DIV +L +R + +A D+T L + +S
Sbjct: 297 RDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQA-GDETYLDIFRDFSLMASDDP 355
Query: 419 SALTR 423
L+R
Sbjct: 356 EKLSR 360
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%)
Query: 428 TPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDA 487
TPL A AN LL+NGA+V+ + PLH A+ LG+ +A L L+ GA + A
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA 296
Query: 488 PTKDGYTALHISAKEGQDEVASIL 511
+G L I+ + ++ ++L
Sbjct: 297 RDSEGRDPLTIAMETANADIVTLL 320
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 37/84 (44%)
Query: 577 TPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHA 636
TPL A + + LLQ A V+ G PLH A+ H +A L L RGA A
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA 296
Query: 637 VAKNGYTPLHIAAKKNQMDIATTL 660
G PL IA + DI T L
Sbjct: 297 RDSEGRDPLTIAMETANADIVTLL 320
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 9/119 (7%)
Query: 69 FEATGQEEVAKILVD---NGATINVQSLNG----FTPLYMAAQENHDGVVRYLLSKGGNQ 121
F A+G + D +GA +N +NG TPL A N +LL G N
Sbjct: 204 FRASGHPPSLPTMADALAHGADVNW--VNGGQDNATPLIQATAANSLLACEFLLQNGANV 261
Query: 122 TLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 180
A PLH A G + L + +GA++ A+ +G PL A + + +++ +L
Sbjct: 262 NQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%)
Query: 120 NQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDI 179
N + N TPL A + E L+ GAN+ G PLH A GH + +
Sbjct: 227 NWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACL 286
Query: 180 LIEKGAALYSKTKNGLAPLHMASQ 203
+++GA L ++ G PL +A +
Sbjct: 287 FLKRGADLGARDSEGRDPLTIAME 310
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%)
Query: 638 AKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHG 697
++ TPL A N + LL+ A N AG PLH + GHT ++ L ++ G
Sbjct: 232 GQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRG 291
Query: 698 ATVSHQAKNGLTPLHLCAQEDKVNVATI 725
A + + G PL + + ++ T+
Sbjct: 292 ADLGARDSEGRDPLTIAMETANADIVTL 319
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
Query: 694 IEHGATVS--HQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFG 751
+ HGA V+ + ++ TPL + + + NGA ++ AG PLH A+ G
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Query: 752 QLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLL 792
+ ++ GA++ A + G PL A + I+ LL
Sbjct: 280 HTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%)
Query: 742 TPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGA 797
TPL A+ L +L++NGANVN + G PLH A+ G + L L GA
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 33/71 (46%)
Query: 197 PLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNAR 256
PL A+ + A L+ +GA V++ LH A+ GH +A L R AD AR
Sbjct: 238 PLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGAR 297
Query: 257 ALNGFTPLHIA 267
G PL IA
Sbjct: 298 DSEGRDPLTIA 308
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Query: 446 LRNGASVDA--RAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEG 503
L +GA V+ +++ TPL A+ + LLQ+GA+V+ G LH + G
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Query: 504 QDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
+A + + GA + A +G PL +A + I +L
Sbjct: 280 HTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 33/68 (48%)
Query: 560 ILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYD 619
L ++GA++ G PLH A G +A + L++ A + ++ G PL +A
Sbjct: 253 FLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETA 312
Query: 620 HQNVALLL 627
+ ++ LL
Sbjct: 313 NADIVTLL 320
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 38/89 (42%)
Query: 605 GKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYN 664
G++ TPL A+ + LL GA+ + G PLH A +A L+
Sbjct: 232 GQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRG 291
Query: 665 AKPNAESKAGFTPLHLSAQEGHTDMSSLL 693
A A G PL ++ + + D+ +LL
Sbjct: 292 ADLGARDSEGRDPLTIAMETANADIVTLL 320
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 53/125 (42%), Gaps = 5/125 (4%)
Query: 303 TPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDT 362
TPL A N E LL+ GA++ +G PLH A+ +G +A L+ GA
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA 296
Query: 363 ATVRGETPLHLAARANQTDIVRIL----LRNGASVDARAREDQTPLHVASRLRRFSSASQ 418
G PL +A DIV +L +R + +A D+T L + +S
Sbjct: 297 RDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQA-GDETYLDIFRDFSLMASDDP 355
Query: 419 SALTR 423
L+R
Sbjct: 356 EKLSR 360
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%)
Query: 428 TPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDA 487
TPL A AN LL+NGA+V+ + PLH A+ LG+ +A L L+ GA + A
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA 296
Query: 488 PTKDGYTALHISAKEGQDEVASIL 511
+G L I+ + ++ ++L
Sbjct: 297 RDSEGRDPLTIAMETANADIVTLL 320
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 37/84 (44%)
Query: 577 TPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHA 636
TPL A + + LLQ A V+ G PLH A+ H +A L L RGA A
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA 296
Query: 637 VAKNGYTPLHIAAKKNQMDIATTL 660
G PL IA + DI T L
Sbjct: 297 RDSEGRDPLTIAMETANADIVTLL 320
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 9/119 (7%)
Query: 69 FEATGQEEVAKILVD---NGATINVQSLNG----FTPLYMAAQENHDGVVRYLLSKGGNQ 121
F A+G + D +GA +N +NG TPL A N +LL G N
Sbjct: 204 FRASGHPPSLPTMADALAHGADVNW--VNGGQDNATPLIQATAANSLLACEFLLQNGANV 261
Query: 122 TLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 180
A PLH A G + L + +GA++ A+ +G PL A + + +++ +L
Sbjct: 262 NQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%)
Query: 120 NQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDI 179
N + N TPL A + E L+ GAN+ G PLH A GH + +
Sbjct: 227 NWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACL 286
Query: 180 LIEKGAALYSKTKNGLAPLHMASQ 203
+++GA L ++ G PL +A +
Sbjct: 287 FLKRGADLGARDSEGRDPLTIAME 310
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%)
Query: 638 AKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHG 697
++ TPL A N + LL+ A N AG PLH + GHT ++ L ++ G
Sbjct: 232 GQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRG 291
Query: 698 ATVSHQAKNGLTPLHLCAQEDKVNVATI 725
A + + G PL + + ++ T+
Sbjct: 292 ADLGARDSEGRDPLTIAMETANADIVTL 319
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
Query: 694 IEHGATVS--HQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFG 751
+ HGA V+ + ++ TPL + + + NGA ++ AG PLH A+ G
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Query: 752 QLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLL 792
+ ++ GA++ A + G PL A + I+ LL
Sbjct: 280 HTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%)
Query: 742 TPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGA 797
TPL A+ L +L++NGANVN + G PLH A+ G + L L GA
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 33/71 (46%)
Query: 197 PLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNAR 256
PL A+ + A L+ +GA V++ LH A+ GH +A L R AD AR
Sbjct: 238 PLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGAR 297
Query: 257 ALNGFTPLHIA 267
G PL IA
Sbjct: 298 DSEGRDPLTIA 308
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Query: 446 LRNGASVDA--RAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEG 503
L +GA V+ +++ TPL A+ + LLQ+GA+V+ G LH + G
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Query: 504 QDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
+A + + GA + A +G PL +A + I +L
Sbjct: 280 HTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 33/68 (48%)
Query: 560 ILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYD 619
L ++GA++ G PLH A G +A + L++ A + ++ G PL +A
Sbjct: 253 FLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETA 312
Query: 620 HQNVALLL 627
+ ++ LL
Sbjct: 313 NADIVTLL 320
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 38/89 (42%)
Query: 605 GKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYN 664
G++ TPL A+ + LL GA+ + G PLH A +A L+
Sbjct: 232 GQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRG 291
Query: 665 AKPNAESKAGFTPLHLSAQEGHTDMSSLL 693
A A G PL ++ + + D+ +LL
Sbjct: 292 ADLGARDSEGRDPLTIAMETANADIVTLL 320
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 53/125 (42%), Gaps = 5/125 (4%)
Query: 303 TPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDT 362
TPL A N E LL+ GA++ +G PLH A+ +G +A L+ GA
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA 296
Query: 363 ATVRGETPLHLAARANQTDIVRIL----LRNGASVDARAREDQTPLHVASRLRRFSSASQ 418
G PL +A DIV +L +R + +A D+T L + +S
Sbjct: 297 RDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQA-GDETYLDIFRDFSLMASDDP 355
Query: 419 SALTR 423
L+R
Sbjct: 356 EKLSR 360
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%)
Query: 428 TPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDA 487
TPL A AN LL+NGA+V+ + PLH A+ LG+ +A L L+ GA + A
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA 296
Query: 488 PTKDGYTALHISAKEGQDEVASIL 511
+G L I+ + ++ ++L
Sbjct: 297 RDSEGRDPLTIAMETANADIVTLL 320
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 37/84 (44%)
Query: 577 TPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHA 636
TPL A + + LLQ A V+ G PLH A+ H +A L L RGA A
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA 296
Query: 637 VAKNGYTPLHIAAKKNQMDIATTL 660
G PL IA + DI T L
Sbjct: 297 RDSEGRDPLTIAMETANADIVTLL 320
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 9/119 (7%)
Query: 69 FEATGQEEVAKILVD---NGATINVQSLNG----FTPLYMAAQENHDGVVRYLLSKGGNQ 121
F A+G + D +GA +N +NG TPL A N +LL G N
Sbjct: 204 FRASGHPPSLPTMADALAHGADVNW--VNGGQDNATPLIQATAANSLLACEFLLQNGANV 261
Query: 122 TLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 180
A PLH A G + L + +GA++ A+ +G PL A + + +++ +L
Sbjct: 262 NQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%)
Query: 120 NQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDI 179
N + N TPL A + E L+ GAN+ G PLH A GH + +
Sbjct: 227 NWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACL 286
Query: 180 LIEKGAALYSKTKNGLAPLHMASQ 203
+++GA L ++ G PL +A +
Sbjct: 287 FLKRGADLGARDSEGRDPLTIAME 310
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%)
Query: 638 AKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHG 697
++ TPL A N + LL+ A N AG PLH + GHT ++ L ++ G
Sbjct: 232 GQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRG 291
Query: 698 ATVSHQAKNGLTPLHLCAQEDKVNVATI 725
A + + G PL + + ++ T+
Sbjct: 292 ADLGARDSEGRDPLTIAMETANADIVTL 319
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
Query: 694 IEHGATVS--HQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFG 751
+ HGA V+ + ++ TPL + + + NGA ++ AG PLH A+ G
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Query: 752 QLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLL 792
+ ++ GA++ A + G PL A + I+ LL
Sbjct: 280 HTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%)
Query: 742 TPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGA 797
TPL A+ L +L++NGANVN + G PLH A+ G + L L GA
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 33/71 (46%)
Query: 197 PLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNAR 256
PL A+ + A L+ +GA V++ LH A+ GH +A L R AD AR
Sbjct: 238 PLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGAR 297
Query: 257 ALNGFTPLHIA 267
G PL IA
Sbjct: 298 DSEGRDPLTIA 308
Score = 32.7 bits (73), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Query: 446 LRNGASVDA--RAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEG 503
L +GA V+ +++ TPL A+ + LLQ+GA+V+ G LH + G
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Query: 504 QDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
+A + + GA + A +G PL +A + I +L
Sbjct: 280 HTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 33/68 (48%)
Query: 560 ILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYD 619
L ++GA++ G PLH A G +A + L++ A + ++ G PL +A
Sbjct: 253 FLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETA 312
Query: 620 HQNVALLL 627
+ ++ LL
Sbjct: 313 NADIVTLL 320
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 38/89 (42%)
Query: 605 GKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYN 664
G++ TPL A+ + LL GA+ + G PLH A +A L+
Sbjct: 232 GQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRG 291
Query: 665 AKPNAESKAGFTPLHLSAQEGHTDMSSLL 693
A A G PL ++ + + D+ +LL
Sbjct: 292 ADLGARDSEGRDPLTIAMETANADIVTLL 320
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%)
Query: 347 MNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHV 406
++I FL+Q D T +G T LH + + +++LLR AS++ +TPL +
Sbjct: 185 LHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDI 244
Query: 407 ASRLR 411
A RL+
Sbjct: 245 AKRLK 249
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 427 ETPLHLAARA---NQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGA 483
ET LHLA R+ IV L++N ++D + + T LH N + LLL+ A
Sbjct: 170 ETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKA 229
Query: 484 SVDAPTKDGYTALHISAKEGQDEVASILTES 514
S++ + G T L I+ + + +LT++
Sbjct: 230 SIEIANESGETPLDIAKRLKHEHCEELLTQA 260
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 10/119 (8%)
Query: 432 LAARANQTDIV-RILLRNGASVDARAREDQTPLHVASRLGNGD---IASLLLQHGASVDA 487
L A A+ D+ +I L NG D+T LH+A R + I L+Q+ ++D
Sbjct: 147 LQAYADGVDLTEKIPLANGH------EPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDK 200
Query: 488 PTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQ 546
T G TALH E +L ASI + G TPL +A + ++L Q
Sbjct: 201 QTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQ 259
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 9/115 (7%)
Query: 373 LAARANQTDIV-RILLRNGASVDARARE------DQTPLHVASRLRRFSSASQSALTRVR 425
L A A+ D+ +I L NG D A D+T LH+ L + S +
Sbjct: 147 LQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGK-- 204
Query: 426 GETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQ 480
G T LH + + +++LLR AS++ +TPL +A RL + LL Q
Sbjct: 205 GSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQ 259
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%)
Query: 110 VVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAA 169
+V +L+ GN T T LH C ++LL+ A+IE G TPL A
Sbjct: 187 IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK 246
Query: 170 RSGHDNVIDILIE 182
R H++ ++L +
Sbjct: 247 RLKHEHCEELLTQ 259
Score = 37.0 bits (84), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 262 TPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLL 321
T LH+A + S H + L+ + + + G T LH C + + ++LLL
Sbjct: 171 TALHLAVRSVDRTSLH-----IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL 225
Query: 322 KYGASIAATTESGLTPLHVA 341
+ ASI ESG TPL +A
Sbjct: 226 RGKASIEIANESGETPLDIA 245
Score = 36.6 bits (83), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 577 TPLHLAAK---YGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGAS 633
T LHLA + + I L+Q +D Q G T LH D+ LLL AS
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKAS 230
Query: 634 PHAVAKNGYTPLHIAAK 650
++G TPL IA +
Sbjct: 231 IEIANESGETPLDIAKR 247
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 34/71 (47%)
Query: 557 VASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVAS 616
+ L ++ ++ T KG T LH + ++LL+ A ++ ++G TPL +A
Sbjct: 187 IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK 246
Query: 617 HYDHQNVALLL 627
H++ LL
Sbjct: 247 RLKHEHCEELL 257
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Query: 676 TPLHLSAQEGHTDMSSL-----LIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNG 730
T LHL+ + D +SL L+++ + Q G T LH C D + +
Sbjct: 171 TALHLAVRS--VDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGK 228
Query: 731 AEIDPVTKAGFTPLHIASHF 750
A I+ ++G TPL IA
Sbjct: 229 ASIEIANESGETPLDIAKRL 248
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 303 TPLHIACK---KNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAA 359
T LH+A + + +V+ L++ ++ T G T LH LL+ A+
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKAS 230
Query: 360 PDTATVRGETPLHLAAR 376
+ A GETPL +A R
Sbjct: 231 IEIANESGETPLDIAKR 247
Score = 32.7 bits (73), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 35/71 (49%)
Query: 143 MVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMAS 202
+V+ L+ N++ +T G T LH + + + +L+ A++ ++G PL +A
Sbjct: 187 IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK 246
Query: 203 QGDHEAATRVL 213
+ HE +L
Sbjct: 247 RLKHEHCEELL 257
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 75/183 (40%), Gaps = 26/183 (14%)
Query: 366 RGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVR 425
RG+T LH+A V +L+ GA V A+AR RF
Sbjct: 92 RGQTALHIAIERRCKHYVELLVEKGADVHAQARG------------RFFQPKDEGGYFYF 139
Query: 426 GETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASV 485
GE PL LAA NQ IV L NG R+D SR GN + +L+ ++
Sbjct: 140 GELPLSLAACTNQPHIVHYLTENGHKQADLRRQD-------SR-GNTVLHALV-----AI 186
Query: 486 DAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLL 545
T++ + + A + ++ G +PL +AAK G++ I Q ++
Sbjct: 187 ADNTRENTKFVTKMYDLLLIKCAKLFPDTNLE-ALLNNDGLSPLMMAAKTGKIGIFQHII 245
Query: 546 QKD 548
+++
Sbjct: 246 RRE 248
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 71/191 (37%), Gaps = 51/191 (26%)
Query: 425 RGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGAS 484
RG+T LH+A V +L+ GA V A+AR G
Sbjct: 92 RGQTALHIAIERRCKHYVELLVEKGADVHAQAR------------------------GRF 127
Query: 485 VDAPTKDGY-----TALHISAKEGQDEVASILTESG---ASITATTKKGFTPLHLAAKYG 536
+ GY L ++A Q + LTE+G A + +G T LH
Sbjct: 128 FQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIA 187
Query: 537 R---------MKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGR 587
K+ +LL K A + + ++L G S PL +AAK G+
Sbjct: 188 DNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLS----------PLMMAAKTGK 237
Query: 588 MKIAQMLLQKD 598
+ I Q +++++
Sbjct: 238 IGIFQHIIRRE 248
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 61/173 (35%), Gaps = 45/173 (26%)
Query: 301 GFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAP 360
G T LHIA ++ VELL++ GA + A F F
Sbjct: 93 GQTALHIAIERRCKHYVELLVEKGADVHAQARGRF-------FQPKDEGGYFYF------ 139
Query: 361 DTATVRGETPLHLAARANQTDIVRILLRNGASVDARARED---QTPLH----VASRLRR- 412
GE PL LAA NQ IV L NG R+D T LH +A R
Sbjct: 140 ------GELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTREN 193
Query: 413 ------------------FSSASQSALTRVRGETPLHLAARANQTDIVRILLR 447
F + AL G +PL +AA+ + I + ++R
Sbjct: 194 TKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIR 246
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 55/142 (38%), Gaps = 33/142 (23%)
Query: 78 AKILVDNGATINVQSLNGF--------------TPLYMAAQENHDGVVRYLLSKGGNQTL 123
++LV+ GA ++ Q+ F PL +AA N +V YL G Q
Sbjct: 109 VELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQAD 168
Query: 124 ATEHNI---TPLHVACKWGK---------VAMVELLISKGA------NIEAK-TRDGLTP 164
+ T LH M +LL+ K A N+EA DGL+P
Sbjct: 169 LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSP 228
Query: 165 LHCAARSGHDNVIDILIEKGAA 186
L AA++G + +I + A
Sbjct: 229 LMMAAKTGKIGIFQHIIRREIA 250
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 14/69 (20%)
Query: 130 TPLHVACKWGKVAMVELLISKGANIEAKTRD--------------GLTPLHCAARSGHDN 175
T LH+A + VELL+ KGA++ A+ R G PL AA + +
Sbjct: 95 TALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPH 154
Query: 176 VIDILIEKG 184
++ L E G
Sbjct: 155 IVHYLTENG 163
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 67/171 (39%), Gaps = 6/171 (3%)
Query: 95 GFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANI 154
G + Y A +N+ +V LL+ G + L N PLH A +V++L+ G +
Sbjct: 31 GHSASYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQAATLEDTKIVKILLFSGLDD 88
Query: 155 EAKTRDGLTPLHCAARSGHDNVIDILIEKGAAL--YSKTKNGLAPLHMASQGDHEAATRV 212
G T L+ A SG+ + + ++K L Y KT + H D +
Sbjct: 89 SQFDDKGNTALYYAVDSGNXQTVKLFVKKNWRLXFYGKTGWKTSFYHAVXLNDVSIVSYF 148
Query: 213 LIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTP 263
L + D + L+ +H+ GHV LLD N F P
Sbjct: 149 LSEIPSTFDLAIL--LSCIHITIKNGHVDXXILLLDYXTSTNTNNSLLFIP 197
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 2/123 (1%)
Query: 556 KVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGV-TPLHV 614
K+ IL SG + KG T L+ A G + ++ ++K+ + GK G T +
Sbjct: 76 KIVKILLFSGLDDSQFDDKGNTALYYAVDSGNXQTVKLFVKKNWRLXFYGKTGWKTSFYH 135
Query: 615 ASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAG 674
A + ++ L S +A + +HI K +D LL+Y N +
Sbjct: 136 AVXLNDVSIVSYFLSEIPSTFDLAI-LLSCIHITIKNGHVDXXILLLDYXTSTNTNNSLL 194
Query: 675 FTP 677
F P
Sbjct: 195 FIP 197
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 77/204 (37%), Gaps = 33/204 (16%)
Query: 353 LLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRR 412
LL AGA + + E PLH AA T IV+ILL +G +D +D
Sbjct: 50 LLNAGALKNL--LENEFPLHQAATLEDTKIVKILLFSG--LDDSQFDD------------ 93
Query: 413 FSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARARED-QTPLHVASRLGN 471
+G T L+ A + V++ ++ + + +T + A L +
Sbjct: 94 ------------KGNTALYYAVDSGNXQTVKLFVKKNWRLXFYGKTGWKTSFYHAVXLND 141
Query: 472 GDIASLLLQH-GASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTP-L 529
I S L ++ D + +HI+ K G + +L + S F P +
Sbjct: 142 VSIVSYFLSEIPSTFDLAI--LLSCIHITIKNGHVDXXILLLDYXTSTNTNNSLLFIPDI 199
Query: 530 HLAAKYGRMKIAQMLLQKDAPVDS 553
LA ++ Q L + D + S
Sbjct: 200 KLAIDNKDIEXLQALFKYDINIYS 223
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 39/108 (36%), Gaps = 1/108 (0%)
Query: 710 PLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNAT 769
PLH A + + I +F+G + G T L+ A G V+ V+ +
Sbjct: 65 PLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNXQTVKLFVKKNWRLXFY 124
Query: 770 TNLGY-TPLHQASQQGRVLIIDLLLGAGAQPNATTNLFCCATILVKNG 816
G+ T + A V I+ L L C I +KNG
Sbjct: 125 GKTGWKTSFYHAVXLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNG 172
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 54/127 (42%), Gaps = 10/127 (7%)
Query: 578 PLHLAAKYGRMKIAQMLL---QKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASP 634
PLH AA KI ++LL D+ D +G T L+ A + L + +
Sbjct: 65 PLHQAATLEDTKIVKILLFSGLDDSQFDDKGN---TALYYAVDSGNXQTVKLFVKKNWRL 121
Query: 635 HAVAKNGY-TPLHIAAKKNQMDIATTLLEYNAKPNAESKAGF-TPLHLSAQEGHTDMSSL 692
K G+ T + A N + I + L + P+ A + +H++ + GH D L
Sbjct: 122 XFYGKTGWKTSFYHAVXLNDVSIVSYFL--SEIPSTFDLAILLSCIHITIKNGHVDXXIL 179
Query: 693 LIEHGAT 699
L+++ +
Sbjct: 180 LLDYXTS 186
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 74/184 (40%), Gaps = 26/184 (14%)
Query: 366 RGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVR 425
RG+T LH+A V +L+ GA V A+AR RF
Sbjct: 90 RGQTALHIAIERRCKHYVELLVAQGADVHAQARG------------RFFQPKDEGGYFYF 137
Query: 426 GETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASV 485
GE PL LAA NQ IV L N R+D SR GN + +L+ ++
Sbjct: 138 GELPLSLAACTNQPHIVNYLTENPHKKADMRRQD-------SR-GNTVLHALV-----AI 184
Query: 486 DAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLL 545
T++ + + A + +S G +PL +AAK G++ I Q ++
Sbjct: 185 ADNTRENTKFVTKMYDLLLLKCARLFPDSNLE-AVLNNDGLSPLMMAAKTGKIGIFQHII 243
Query: 546 QKDA 549
+++
Sbjct: 244 RREV 247
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 84/225 (37%), Gaps = 57/225 (25%)
Query: 397 AREDQTP--LHVASR---LRRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGAS 451
R D P L +A R +R F ++ + RG+T LH+A V +L+ GA
Sbjct: 58 GRNDTIPVLLDIAERTGNMREFINSPFRDIY-YRGQTALHIAIERRCKHYVELLVAQGAD 116
Query: 452 VDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGY-----TALHISAKEGQDE 506
V A+AR G + GY L ++A Q
Sbjct: 117 VHAQAR------------------------GRFFQPKDEGGYFYFGELPLSLAACTNQPH 152
Query: 507 VASILTES---GASITATTKKGFTPLHLAAKYGR---------MKIAQMLLQKDAPVDSQ 554
+ + LTE+ A + +G T LH K+ +LL K A +
Sbjct: 153 IVNYLTENPHKKADMRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLLKCARLFPD 212
Query: 555 GKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDA 599
+ ++L G S PL +AAK G++ I Q +++++
Sbjct: 213 SNLEAVLNNDGLS----------PLMMAAKTGKIGIFQHIIRREV 247
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 282 WVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVA 341
W+ +L NA+ NG T L+IA + +V+ LL YGA +SGL P+
Sbjct: 270 WIIANML------NAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG 323
Query: 342 S 342
+
Sbjct: 324 A 324
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 635 HAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSA 682
+A NG T L+IAA+ + I LL+Y A P +K+G P+ A
Sbjct: 277 NAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 735 PVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQA 780
PV + G TPLH + L +V++LV++G+N N+G + L +A
Sbjct: 126 PVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKA 171
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 30/49 (61%)
Query: 154 IEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMAS 202
+ A+ +G T L+ AAR G+ +++D L++ GA + K+GL P+ +
Sbjct: 276 LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 601 VDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAA 649
+++Q NG T L++A+ + ++ LLD GA P K+G P+ A
Sbjct: 276 LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324
>pdb|1W9H|A Chain A, The Structure Of A Piwi Protein From Archaeoglobus
Fulgidus.
pdb|2BGG|A Chain A, The Structure Of A Piwi Protein From Archaeoglobus
Fulgidus Complexed With A 16nt Sirna Duplex.
pdb|2BGG|B Chain B, The Structure Of A Piwi Protein From Archaeoglobus
Fulgidus Complexed With A 16nt Sirna Duplex.
pdb|2W42|A Chain A, The Structure Of A Piwi Protein From Archaeoglobus
Fulgidus Complexed With A 16nt Dna Duplex.
pdb|2W42|B Chain B, The Structure Of A Piwi Protein From Archaeoglobus
Fulgidus Complexed With A 16nt Dna Duplex
Length = 427
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 790 DLLLGAGAQPNATTNLFCCATILVKNGA----EIDPVTKLSD 827
D+++G GA NLFC A + K+G EI P+ S+
Sbjct: 180 DIIIGTGATRIDNVNLFCFAMVFKKDGTMLWNEISPIVTSSE 221
>pdb|1YTU|A Chain A, Structural Basis For 5'-end-specific Recognition Of The
Guide Rna Strand By The A. Fulgidus Piwi Protein
pdb|1YTU|B Chain B, Structural Basis For 5'-end-specific Recognition Of The
Guide Rna Strand By The A. Fulgidus Piwi Protein
Length = 427
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 790 DLLLGAGAQPNATTNLFCCATILVKNGA----EIDPVTKLSD 827
D+++G GA NLFC A + K+G EI P+ S+
Sbjct: 180 DIIIGTGATRIDNVNLFCFAXVFKKDGTXLWNEISPIVTSSE 221
>pdb|1B0Z|A Chain A, The Crystal Structure Of Phosphoglucose Isomerase-An
Enzyme With Autocrine Motility Factor Activity In Tumor
Cells
pdb|1C7Q|A Chain A, The Crystal Structure Of Phosphoglucose IsomeraseAUTOCRINE
MOTILITY FactorNEUROLEUKIN COMPLEXED WITH ITS
CARBOHYDRATE PHOSPHATE Inhibitors And Its Substrate
Recognition Mechanism
pdb|1C7R|A Chain A, The Crystal Structure Of Phosphoglucose IsomeraseAUTOCRINE
MOTILITY FactorNEUROLEUKIN COMPLEXED WITH ITS
CARBOHYDRATE PHOSPHATE Inhibitors And Its Substrate
Recognition Mechanism
pdb|2PGI|A Chain A, The Crystal Structure Of Phosphoglucose Isomerase-An
Enzyme With Autocrine Motility Factor Activity In Tumor
Cells
Length = 445
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 8/87 (9%)
Query: 151 GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAAT 210
G T GL P+ A + ID ++E A+ Y K N P + ++ AA
Sbjct: 200 GGRYSVLTAVGLLPIAVAGLN-----IDRMMEGAASAYHKYNN---PDLLTNESYQYAAV 251
Query: 211 RVLIYHGAGVDEITVDYLTALHVASHC 237
R ++Y E+ V+Y +LH S
Sbjct: 252 RNILYRKGKAIELLVNYEPSLHYVSEW 278
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,870,598
Number of Sequences: 62578
Number of extensions: 921680
Number of successful extensions: 5746
Number of sequences better than 100.0: 124
Number of HSP's better than 100.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2164
Number of HSP's gapped (non-prelim): 1807
length of query: 838
length of database: 14,973,337
effective HSP length: 107
effective length of query: 731
effective length of database: 8,277,491
effective search space: 6050845921
effective search space used: 6050845921
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)