Query psy3308
Match_columns 838
No_of_seqs 408 out of 4759
Neff 11.3
Searched_HMMs 29240
Date Fri Aug 16 21:40:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3308.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3308hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 100.0 2.3E-61 7.9E-66 521.1 50.0 397 324-796 4-400 (437)
2 1n11_A Ankyrin; clathrin, BAND 100.0 2.1E-61 7.2E-66 521.4 49.0 397 83-513 2-398 (437)
3 4g8k_A 2-5A-dependent ribonucl 100.0 1.6E-44 5.3E-49 374.5 36.0 288 460-802 26-330 (337)
4 4g8k_A 2-5A-dependent ribonucl 100.0 1E-43 3.5E-48 368.4 35.8 294 94-396 24-330 (337)
5 1wdy_A 2-5A-dependent ribonucl 100.0 2E-42 7E-47 350.9 34.1 263 525-804 5-284 (285)
6 3utm_A Tankyrase-1; tankyrase, 100.0 6.1E-42 2.1E-46 358.9 35.3 287 85-392 48-334 (351)
7 3utm_A Tankyrase-1; tankyrase, 100.0 2.3E-41 7.9E-46 354.5 35.0 322 459-816 24-350 (351)
8 2fo1_E LIN-12 protein; beta-ba 100.0 4.5E-43 1.5E-47 367.1 21.8 318 428-799 39-372 (373)
9 1wdy_A 2-5A-dependent ribonucl 100.0 3.5E-41 1.2E-45 341.8 33.1 267 94-364 4-283 (285)
10 3d9h_A CDNA FLJ77766, highly s 100.0 1.5E-40 5.1E-45 334.0 25.6 269 523-801 13-282 (285)
11 2fo1_E LIN-12 protein; beta-ba 100.0 1.8E-41 6.2E-46 354.9 19.4 318 23-392 38-371 (373)
12 3d9h_A CDNA FLJ77766, highly s 100.0 1.7E-40 5.8E-45 333.6 24.0 261 572-837 12-284 (285)
13 1yyh_A HN1;, notch 1, ankyrin 100.0 9.4E-40 3.2E-44 322.8 23.9 231 567-797 2-247 (253)
14 2xai_A ASB-9, ankyrin repeat a 100.0 6.6E-40 2.2E-44 325.4 22.8 241 574-818 2-251 (261)
15 1yyh_A HN1;, notch 1, ankyrin 100.0 1.7E-39 5.8E-44 321.0 20.7 232 600-832 2-249 (253)
16 3b7b_A Euchromatic histone-lys 100.0 2.6E-38 8.9E-43 310.1 28.7 229 566-794 2-231 (237)
17 1k1a_A B-cell lymphoma 3-encod 100.0 8.1E-39 2.8E-43 314.9 23.2 229 569-797 3-240 (241)
18 3ljn_A Hypothetical protein; a 100.0 2.5E-40 8.5E-45 347.0 12.0 234 566-801 11-272 (364)
19 3aji_A 26S proteasome non-ATPa 100.0 3.4E-38 1.2E-42 307.9 24.4 226 574-799 5-231 (231)
20 2xai_A ASB-9, ankyrin repeat a 100.0 2.6E-38 8.9E-43 313.8 23.7 250 524-794 2-259 (261)
21 3ljn_A Hypothetical protein; a 100.0 3E-39 1E-43 338.8 17.9 232 85-326 10-269 (364)
22 3b7b_A Euchromatic histone-lys 100.0 5.2E-38 1.8E-42 308.0 24.5 228 599-827 2-231 (237)
23 4b93_B Ankyrin repeat domain-c 100.0 3.9E-39 1.3E-43 318.7 15.9 230 571-800 7-246 (269)
24 1k1a_A B-cell lymphoma 3-encod 100.0 1.3E-37 4.5E-42 306.3 22.2 226 602-828 3-238 (241)
25 3eu9_A Huntingtin-interacting 100.0 4.3E-37 1.5E-41 302.7 25.8 234 569-802 3-239 (240)
26 1oy3_D Transcription factor in 100.0 1.1E-37 3.8E-42 315.1 21.9 249 569-817 3-270 (282)
27 2f8y_A Notch homolog 1, transl 100.0 4.2E-37 1.4E-41 298.4 23.7 216 586-801 2-219 (223)
28 4b93_B Ankyrin repeat domain-c 100.0 1E-37 3.5E-42 308.5 15.7 214 604-817 7-230 (269)
29 3kea_A K1L; tropism, ANK repea 100.0 1.8E-37 6.2E-42 311.2 15.6 226 568-803 24-251 (285)
30 2dzn_A Probable 26S proteasome 100.0 3E-36 1E-40 293.6 23.1 218 575-795 2-227 (228)
31 3aji_A 26S proteasome non-ATPa 100.0 4.4E-36 1.5E-40 292.9 24.1 227 524-766 5-231 (231)
32 3kea_A K1L; tropism, ANK repea 100.0 1.1E-36 3.8E-41 305.5 20.1 237 72-328 10-248 (285)
33 1oy3_D Transcription factor in 100.0 4.2E-36 1.4E-40 303.5 22.7 250 521-784 5-269 (282)
34 2dzn_A Probable 26S proteasome 100.0 1.4E-35 4.7E-40 288.9 22.0 208 608-815 2-218 (228)
35 1s70_B 130 kDa myosin-binding 100.0 1.9E-35 6.4E-40 301.2 20.9 236 572-814 37-274 (299)
36 3eu9_A Huntingtin-interacting 100.0 1.9E-34 6.4E-39 283.8 26.3 231 89-360 3-236 (240)
37 2f8y_A Notch homolog 1, transl 100.0 6.5E-35 2.2E-39 282.9 22.3 216 72-295 1-218 (223)
38 4gpm_A Engineered protein OR26 100.0 3.9E-34 1.3E-38 259.4 21.2 159 643-801 6-164 (169)
39 1s70_B 130 kDa myosin-binding 100.0 1.6E-34 5.4E-39 294.4 20.6 272 69-388 5-285 (299)
40 1sw6_A Regulatory protein SWI6 100.0 2.1E-36 7.1E-41 310.0 6.6 268 469-782 29-325 (327)
41 1sw6_A Regulatory protein SWI6 100.0 8.4E-36 2.9E-40 305.5 9.6 243 561-816 38-327 (327)
42 1ikn_D Protein (I-kappa-B-alph 100.0 2.6E-35 8.8E-40 288.1 12.5 212 603-814 3-228 (236)
43 2rfa_A Transient receptor pote 100.0 5.6E-34 1.9E-38 278.1 21.9 196 608-803 3-227 (232)
44 3hra_A Ankyrin repeat family p 100.0 8.9E-33 3.1E-37 262.9 25.0 191 606-796 3-201 (201)
45 1ikn_D Protein (I-kappa-B-alph 100.0 1.8E-34 6.2E-39 282.1 10.8 215 570-784 3-230 (236)
46 2rfa_A Transient receptor pote 100.0 1.1E-32 3.8E-37 268.9 21.4 197 574-770 2-227 (232)
47 2pnn_A Transient receptor pote 100.0 1.5E-33 5E-38 282.3 13.8 206 602-807 7-268 (273)
48 4gpm_A Engineered protein OR26 100.0 2.9E-32 1E-36 247.0 20.8 159 610-768 6-164 (169)
49 2etb_A Transient receptor pote 100.0 2.1E-33 7.3E-38 278.3 13.0 193 608-800 2-248 (256)
50 3hra_A Ankyrin repeat family p 100.0 2.2E-31 7.5E-36 253.3 24.9 190 574-763 4-201 (201)
51 2pnn_A Transient receptor pote 100.0 3.8E-32 1.3E-36 272.1 12.7 209 568-776 6-270 (273)
52 2etb_A Transient receptor pote 100.0 5.1E-32 1.7E-36 268.4 11.9 193 575-767 2-248 (256)
53 3jxi_A Vanilloid receptor-rela 100.0 8E-32 2.7E-36 267.8 13.0 196 607-802 4-254 (260)
54 2y1l_E Darpin-8.4; hydrolase-i 100.0 1.9E-29 6.4E-34 231.5 20.2 158 639-796 12-169 (169)
55 3v30_A DNA-binding protein rfx 100.0 5E-30 1.7E-34 236.6 16.2 168 641-808 2-170 (172)
56 2rfm_A Putative ankyrin repeat 100.0 5.8E-30 2E-34 240.9 16.9 163 634-796 28-190 (192)
57 1ihb_A P18-INK4C(INK6), cyclin 100.0 8.7E-30 3E-34 232.6 17.3 158 640-798 4-162 (162)
58 4hbd_A KN motif and ankyrin re 100.0 2.4E-30 8.1E-35 257.9 14.3 186 610-795 78-272 (276)
59 3v31_A Ankyrin repeat family A 100.0 1.3E-29 4.6E-34 232.4 17.3 161 640-800 2-162 (167)
60 2aja_A Ankyrin repeat family p 100.0 1.3E-32 4.5E-37 282.5 -3.3 254 97-387 94-369 (376)
61 3jxi_A Vanilloid receptor-rela 100.0 2.4E-30 8.1E-35 257.2 12.4 196 573-768 3-253 (260)
62 3f6q_A Integrin-linked protein 100.0 5.8E-29 2E-33 230.9 17.9 168 640-807 4-172 (179)
63 2aja_A Ankyrin repeat family p 100.0 1.2E-31 4.1E-36 275.4 -1.1 287 72-412 44-361 (376)
64 1awc_B Protein (GA binding pro 100.0 2E-28 7E-33 220.5 18.8 150 642-792 3-152 (153)
65 3v30_A DNA-binding protein rfx 100.0 8E-29 2.7E-33 228.5 16.3 168 609-776 3-171 (172)
66 4hbd_A KN motif and ankyrin re 100.0 3.8E-29 1.3E-33 249.1 14.2 187 576-762 77-272 (276)
67 2rfm_A Putative ankyrin repeat 100.0 1.6E-28 5.4E-33 231.1 17.3 162 602-763 29-190 (192)
68 3twr_A Tankyrase-2; ankyrin re 100.0 1.1E-28 3.6E-33 225.9 15.2 159 638-797 5-164 (165)
69 2y1l_E Darpin-8.4; hydrolase-i 100.0 5E-28 1.7E-32 222.0 19.6 158 606-763 12-169 (169)
70 1ihb_A P18-INK4C(INK6), cyclin 100.0 3.8E-28 1.3E-32 221.7 17.5 157 608-765 5-162 (162)
71 2vge_A RELA-associated inhibit 100.0 4.8E-31 1.6E-35 254.0 -3.7 196 592-790 2-205 (229)
72 3v31_A Ankyrin repeat family A 100.0 7.2E-28 2.5E-32 220.9 17.1 160 607-766 2-161 (167)
73 1bd8_A P19INK4D CDK4/6 inhibit 100.0 1.4E-27 4.7E-32 216.3 17.8 153 641-795 2-155 (156)
74 2vge_A RELA-associated inhibit 100.0 2E-30 6.8E-35 249.6 -1.2 207 624-834 1-216 (229)
75 3f6q_A Integrin-linked protein 100.0 1.9E-27 6.4E-32 220.7 17.2 167 607-773 4-171 (179)
76 1awc_B Protein (GA binding pro 99.9 4.3E-27 1.5E-31 211.9 18.2 150 609-759 3-152 (153)
77 1ycs_B 53BP2, P53BP2; ankyrin 99.9 8.2E-29 2.8E-33 241.4 6.3 183 639-822 3-198 (239)
78 3twr_A Tankyrase-2; ankyrin re 99.9 4.8E-27 1.6E-31 214.9 15.0 159 605-764 5-164 (165)
79 1bd8_A P19INK4D CDK4/6 inhibit 99.9 3E-26 1E-30 207.4 17.5 152 609-762 3-155 (156)
80 1d9s_A Cyclin-dependent kinase 99.9 8E-27 2.7E-31 205.0 13.3 134 664-798 2-136 (136)
81 1ycs_B 53BP2, P53BP2; ankyrin 99.9 8.4E-28 2.9E-32 234.2 6.7 190 606-798 3-204 (239)
82 1bi7_B P16INK4A, MTS1, multipl 99.9 2.3E-26 8E-31 207.5 12.2 140 668-808 6-146 (156)
83 3t8k_A Uncharacterized protein 99.9 9.1E-27 3.1E-31 214.9 7.0 161 641-803 6-184 (186)
84 1d9s_A Cyclin-dependent kinase 99.9 1.7E-25 5.9E-30 196.5 12.9 134 631-765 2-136 (136)
85 1bi7_B P16INK4A, MTS1, multipl 99.9 1.1E-25 3.7E-30 203.2 11.1 144 636-780 7-151 (156)
86 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.6E-24 5.6E-29 188.2 16.1 126 673-798 1-126 (126)
87 2jab_A H10-2-G3; HER2, darpin, 99.9 1.7E-24 5.8E-29 190.1 14.8 126 671-796 11-136 (136)
88 3t8k_A Uncharacterized protein 99.9 3.3E-25 1.1E-29 204.5 8.8 160 609-770 7-184 (186)
89 3c5r_A BARD-1, BRCA1-associate 99.9 1.6E-24 5.5E-29 190.8 9.7 135 664-799 1-135 (137)
90 1n0r_A 4ANK, 4 ankyrin repeats 99.9 2.8E-23 9.6E-28 180.3 16.1 126 640-765 1-126 (126)
91 2jab_A H10-2-G3; HER2, darpin, 99.9 2.7E-23 9.3E-28 182.3 15.2 125 639-763 12-136 (136)
92 3c5r_A BARD-1, BRCA1-associate 99.9 2.6E-23 8.9E-28 183.0 9.5 132 85-217 1-132 (137)
93 3deo_A Signal recognition part 99.9 6.7E-24 2.3E-28 197.1 4.1 140 92-249 41-181 (183)
94 3deo_A Signal recognition part 99.9 1.8E-22 6.2E-27 187.4 12.9 140 638-795 41-181 (183)
95 3ui2_A Signal recognition part 99.9 1.1E-22 3.9E-27 198.1 11.7 142 639-798 43-185 (244)
96 3ehr_A Osteoclast-stimulating 99.9 6.8E-23 2.3E-27 197.5 9.2 136 671-806 70-206 (222)
97 3aaa_C Myotrophin, protein V-1 99.9 2.3E-22 7.7E-27 173.0 11.2 115 672-786 5-119 (123)
98 2b0o_E UPLC1; arfgap, structur 99.9 7.2E-22 2.5E-26 197.9 16.5 137 643-785 153-298 (301)
99 2b0o_E UPLC1; arfgap, structur 99.9 5.6E-22 1.9E-26 198.7 11.8 139 674-818 151-299 (301)
100 1dcq_A PYK2-associated protein 99.9 3E-21 1E-25 191.2 16.1 126 676-801 132-266 (278)
101 3aaa_C Myotrophin, protein V-1 99.9 1.5E-21 5.1E-26 167.9 11.0 118 92-209 4-121 (123)
102 3ui2_A Signal recognition part 99.9 2.3E-21 7.8E-26 188.9 12.4 140 607-764 44-184 (244)
103 1n0q_A 3ANK, 3 ankyrin repeats 99.9 5.9E-21 2E-25 154.4 12.6 93 706-798 1-93 (93)
104 3ehr_A Osteoclast-stimulating 99.8 1E-21 3.4E-26 189.3 9.0 136 638-773 70-206 (222)
105 3lvq_E ARF-GAP with SH3 domain 99.8 1.3E-20 4.3E-25 204.3 15.5 126 643-768 134-268 (497)
106 1dcq_A PYK2-associated protein 99.8 4.4E-20 1.5E-24 182.8 16.3 192 571-766 62-264 (278)
107 3jue_A Arfgap with coiled-coil 99.8 1.9E-20 6.6E-25 191.3 14.1 121 642-762 200-323 (368)
108 1n0q_A 3ANK, 3 ankyrin repeats 99.8 5.9E-20 2E-24 148.5 12.5 93 94-186 1-93 (93)
109 3jue_A Arfgap with coiled-coil 99.8 5.5E-20 1.9E-24 187.9 14.8 144 672-815 197-347 (368)
110 3lvq_E ARF-GAP with SH3 domain 99.8 1.1E-19 3.7E-24 196.9 15.6 134 609-748 133-275 (497)
111 2l6b_A NR1C; ankyrin, consensu 99.8 2.9E-20 9.8E-25 157.6 8.0 106 703-808 5-110 (115)
112 2l6b_A NR1C; ankyrin, consensu 99.8 1.1E-19 3.9E-24 153.9 9.9 109 669-777 4-112 (115)
113 2zgd_A 3 repeat synthetic anky 99.7 3.4E-17 1.2E-21 136.7 10.9 92 701-792 18-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.7 5.1E-17 1.7E-21 135.7 10.5 92 89-180 18-109 (110)
115 4g26_A Pentatricopeptide repea 58.6 21 0.00071 37.8 7.8 99 142-247 91-198 (501)
116 4g26_A Pentatricopeptide repea 47.8 25 0.00086 37.1 6.3 100 209-319 92-196 (501)
117 3mkq_B Coatomer subunit alpha; 40.7 1.4E+02 0.0049 25.8 8.7 73 24-114 10-82 (177)
118 1gp8_A Protein (scaffolding pr 38.2 24 0.00081 21.1 2.3 16 132-147 17-32 (40)
119 3mkq_B Coatomer subunit alpha; 34.9 1.4E+02 0.0049 25.8 7.8 19 230-248 121-139 (177)
120 3qil_A Clathrin heavy chain 1; 20.8 22 0.00076 28.2 0.2 28 125-152 32-59 (125)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2.3e-61 Score=521.15 Aligned_cols=397 Identities=43% Similarity=0.673 Sum_probs=298.5
Q ss_pred CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCccccccCCCCH
Q psy3308 324 GASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTP 403 (838)
Q Consensus 324 ~~~~~~~~~~~~~~l~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~l~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~~~ 403 (838)
|++++..+..|.|||+.|+..|+.++|++|++.|++++..+..+.|||++|+..|+.+++++|+++|+
T Consensus 4 g~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~------------ 71 (437)
T 1n11_A 4 GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKA------------ 71 (437)
T ss_dssp -----------CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTC------------
T ss_pred CCCccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC------------
Confidence 44455555555555555555555555555555555555555555555555555555555555555544
Q ss_pred HHHHHhhCcccchhhhhhcccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy3308 404 LHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGA 483 (838)
Q Consensus 404 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~L~~~~~ 483 (838)
+++.++..+.|||+.|+..|+.+++++|+++|+
T Consensus 72 -----------------------------------------------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga 104 (437)
T 1n11_A 72 -----------------------------------------------KVNAKAKDDQTPLHCAARIGHTNMVKLLLENNA 104 (437)
T ss_dssp -----------------------------------------------CSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTC
T ss_pred -----------------------------------------------CCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCC
Confidence 444444555555555555555555555555555
Q ss_pred CCCCCCCCCChHHHHHHHhCcHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCchhHHHHHhh
Q psy3308 484 SVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTE 563 (838)
Q Consensus 484 ~~~~~~~~~~~~l~~A~~~~~~e~v~~L~~~~~~~~~~~~~~~~~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~l~~ 563 (838)
+++..+..|.|||+.|+..|+.+++++|++.+.+.+..+..|.|||++|+..|+.+++++|++.+..
T Consensus 105 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------------- 171 (437)
T 1n11_A 105 NPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH------------- 171 (437)
T ss_dssp CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-------------
T ss_pred CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-------------
Confidence 5555555555555555555555555555555555555555566666666666666666666654432
Q ss_pred cCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCCh
Q psy3308 564 SGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYT 643 (838)
Q Consensus 564 ~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t 643 (838)
++..+..|.|||+.|+..++.+++++|+++|.+++..+..|.|||++|+..++.+++++|++.|++++..+..|.|
T Consensus 172 ----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t 247 (437)
T 1n11_A 172 ----PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVT 247 (437)
T ss_dssp ----TTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred ----CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCC
Confidence 2344556677777788888888888888888888888888999999999999999999999999999999999999
Q ss_pred HHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHhHHHHhcCCHHHH
Q psy3308 644 PLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVA 723 (838)
Q Consensus 644 ~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~i~ 723 (838)
|||.|+..|+.+++++|++.|++++..+..|.|||++|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++
T Consensus 248 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v 327 (437)
T 1n11_A 248 PLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLV 327 (437)
T ss_dssp HHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHH
T ss_pred HHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHhCcHHHHHHHHhCC
Q psy3308 724 TITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAG 796 (838)
Q Consensus 724 ~~L~~~~~~~~~~~~~g~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g 796 (838)
++|+++|++++.++..|+||||+|+..|+.++|++|+++|++++..|.+|.|||++|++.|+.+++++|....
T Consensus 328 ~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~ 400 (437)
T 1n11_A 328 KFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVT 400 (437)
T ss_dssp HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998643
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2.1e-61 Score=521.43 Aligned_cols=397 Identities=38% Similarity=0.592 Sum_probs=313.2
Q ss_pred HCCCCcccCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCCCC
Q psy3308 83 DNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGL 162 (838)
Q Consensus 83 ~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~Aa~~g~~~iv~~L~~~~~~~~~~~~~~~ 162 (838)
+.|++++..+..|+||||+||..|++++|++|+++|++++..+..|.||||+||..|+.++|++|+++|++++..+..|.
T Consensus 2 ~~g~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~ 81 (437)
T 1n11_A 2 SPGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ 81 (437)
T ss_dssp -------------CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSC
T ss_pred CCCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCccHHHHHHhCCcHHHHHHHHhCCCCCCcccCCCccHHHHHHhcCCHHH
Q psy3308 163 TPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRV 242 (838)
Q Consensus 163 tal~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~A~~~g~~~i 242 (838)
|||++|+..|+.++|++|+++|++++..+..|.|||++|+..|+.+++++|++++.+.+..+..+.|||++|+..|+.++
T Consensus 82 t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~ 161 (437)
T 1n11_A 82 TPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRV 161 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHH
T ss_pred CHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHH
Confidence 99999999999999999999999998889999999999999999999999999998888888889999999999999999
Q ss_pred HHHHHHCCCCccccccCCCchHHHHHhhCCccccccChHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy3308 243 AKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLK 322 (838)
Q Consensus 243 v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~L~~ 322 (838)
+++|+++|++++..+..+.|||+.|+..+ +.+++++|+++|.+++..+..|.|||+.|+..|+.+++++|++
T Consensus 162 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~--------~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 233 (437)
T 1n11_A 162 AELLLERDAHPNAAGKNGLTPLHVAVHHN--------NLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQ 233 (437)
T ss_dssp HHHHHHTTCCTTCCCSSCCCHHHHHHHTT--------CHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhCCCCCCCCCCCCCCHHHHHHHcC--------CHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 99999999888888777888888877776 5667777777777777777777777777777777777777777
Q ss_pred CCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCccccccCCCC
Q psy3308 323 YGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQT 402 (838)
Q Consensus 323 ~~~~~~~~~~~~~~~l~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~l~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~~ 402 (838)
+|++++..+..|.|||+.|+..|+.+++++|++.+++++..+..|.|||++|+..|+.+++++|+++|++++..+..
T Consensus 234 ~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~--- 310 (437)
T 1n11_A 234 YGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRM--- 310 (437)
T ss_dssp TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSS---
T ss_pred cCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCC---
Confidence 77777777777777777777777777777777777777777777777777777777777777777777766655544
Q ss_pred HHHHHHhhCcccchhhhhhcccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy3308 403 PLHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHG 482 (838)
Q Consensus 403 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~L~~~~ 482 (838)
|.|||+.|+..|+.+++++|+++|++++.++..|.|||++|+..|+.+++++|+++|
T Consensus 311 -----------------------g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g 367 (437)
T 1n11_A 311 -----------------------GYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG 367 (437)
T ss_dssp -----------------------CCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred -----------------------CCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCc
Confidence 344555666666666666666666666666666666666666666666666666666
Q ss_pred CCCCCCCCCCChHHHHHHHhCcHHHHHHHHH
Q psy3308 483 ASVDAPTKDGYTALHISAKEGQDEVASILTE 513 (838)
Q Consensus 483 ~~~~~~~~~~~~~l~~A~~~~~~e~v~~L~~ 513 (838)
++++..+..|.||++.|...|+.+++++|..
T Consensus 368 a~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~ 398 (437)
T 1n11_A 368 ASPNEVSSDGTTPLAIAKRLGYISVTDVLKV 398 (437)
T ss_dssp CCSCCCCSSSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence 6666666666666666666666666666654
No 3
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=1.6e-44 Score=374.55 Aligned_cols=288 Identities=26% Similarity=0.373 Sum_probs=215.4
Q ss_pred CcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCC-CChHHHHHHHhCcHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCH
Q psy3308 460 QTPLHVASRLGNGDIASLLLQHGASVDAPTKD-GYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRM 538 (838)
Q Consensus 460 ~~~l~~a~~~~~~~~v~~L~~~~~~~~~~~~~-~~~~l~~A~~~~~~e~v~~L~~~~~~~~~~~~~~~~~l~~A~~~g~~ 538 (838)
.|+|+.|++.|+.++|++|+++|+++|..+.. |.||||+|+..|+.+++++|+++|++++.++..+
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~------------- 92 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNG------------- 92 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC-------------
T ss_pred ChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCC-------------
Confidence 44555555555555555555555555544432 4555555555555555555555555555444444
Q ss_pred HHHHHHHhCCCCCCCchhHHHHHhhcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHc
Q psy3308 539 KIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHY 618 (838)
Q Consensus 539 ~~~~~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~A~~~ 618 (838)
.++++.++..+...++..+++.+.+++..+..|.||+++|+..
T Consensus 93 -------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~ 135 (337)
T 4g8k_A 93 -------------------------------------ATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVY 135 (337)
T ss_dssp -------------------------------------CCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHT
T ss_pred -------------------------------------CchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHc
Confidence 4555555555555555555555555555555556666666666
Q ss_pred CCHHHHHHHHhCCCCCCc----------cCCCCChHHHHHHHcCcHHHHHHHHh-CCCCCCCCCCCCCcHHHHHHHcCc-
Q psy3308 619 DHQNVALLLLDRGASPHA----------VAKNGYTPLHIAAKKNQMDIATTLLE-YNAKPNAESKAGFTPLHLSAQEGH- 686 (838)
Q Consensus 619 ~~~~~v~~Ll~~g~~~~~----------~~~~~~t~L~~A~~~~~~~iv~~Ll~-~~~~~~~~~~~g~t~L~~A~~~g~- 686 (838)
++.+++++|+++|++++. .+..|.||||.|+..|+.++|++|++ .|++++..+..|.|+++.++..+.
T Consensus 136 ~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~ 215 (337)
T 4g8k_A 136 GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD 215 (337)
T ss_dssp TCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCT
T ss_pred CcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCc
Confidence 666666666665555543 34568899999999999999999996 699999999999999998876553
Q ss_pred ---HHHHHHHHhCCCCCCCCCCCCCcHhHHHHhcCCHHHHHHHHhC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHC
Q psy3308 687 ---TDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFN-GAEIDPVTKAGFTPLHIASHFGQLNMVRYLVEN 762 (838)
Q Consensus 687 ---~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~i~~~L~~~-~~~~~~~~~~g~t~l~~A~~~g~~~~v~~Ll~~ 762 (838)
..++++|+++|++++.++..|.||||+|+..|+.+++++|+.. |++++.+|..|+||||+|+..|+.++|++|+++
T Consensus 216 ~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ 295 (337)
T 4g8k_A 216 SDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 295 (337)
T ss_dssp TTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTT
T ss_pred ccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 5689999999999999999999999999999999999999985 899999999999999999999999999999999
Q ss_pred CCCCccCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCCC
Q psy3308 763 GANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNAT 802 (838)
Q Consensus 763 g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ga~~~~~ 802 (838)
|+++|.. +||++|+++|+.++|++|+++||++|..
T Consensus 296 GAd~n~~-----~~L~~A~~~~~~~iv~~Ll~~GA~~d~~ 330 (337)
T 4g8k_A 296 GASTDCG-----DLVMTARRNYDHSLVKVLLSHGAKEDFH 330 (337)
T ss_dssp SCSSTTC-----CHHHHHHHTTCHHHHHHHHHTTCCC---
T ss_pred CCCCCCC-----CHHHHHHHcCCHHHHHHHHHCcCCCCCC
Confidence 9999765 5999999999999999999999999874
No 4
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=1e-43 Score=368.44 Aligned_cols=294 Identities=31% Similarity=0.348 Sum_probs=263.8
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHHCCCCCCcccc-CCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcHHHHHHHcC
Q psy3308 94 NGFTPLYMAAQENHDGVVRYLLSKGGNQTLATE-HNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSG 172 (838)
Q Consensus 94 ~~~t~l~~A~~~g~~~~v~~L~~~~~~~~~~~~-~~~~~l~~Aa~~g~~~iv~~L~~~~~~~~~~~~~~~tal~~A~~~g 172 (838)
.|.|+|+.||++|++++|++|+++|++++..+. .|.||||+||..|+.++|++|+++|++++..+..+.++++.++..+
T Consensus 24 ~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~ 103 (337)
T 4g8k_A 24 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAG 103 (337)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred CCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcc
Confidence 457899999999999999999999999887765 4889999999999999999999999999989999999999999999
Q ss_pred CHHHHHHHHHcCCCccCCCCCCccHHHHHHhCCcHHHHHHHHhCCCCCCcc----------cCCCccHHHHHHhcCCHHH
Q psy3308 173 HDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEI----------TVDYLTALHVASHCGHVRV 242 (838)
Q Consensus 173 ~~~iv~~L~~~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~L~~~~~~~~~~----------~~~~~~~l~~A~~~g~~~i 242 (838)
+.+++..+++.+.+++..+..|.||+++|+..|+.+++++|+++|++++.. +..|.|||++|+..|+.++
T Consensus 104 ~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~ 183 (337)
T 4g8k_A 104 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV 183 (337)
T ss_dssp CHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHH
T ss_pred cchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHH
Confidence 999999999999999888999999999999999999999999998876633 3457899999999999999
Q ss_pred HHHHHH-CCCCccccccCCCchHHHHHhhCCccccccChHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy3308 243 AKTLLD-RKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLL 321 (838)
Q Consensus 243 v~~L~~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~L~ 321 (838)
|++|++ .|++++..+..+.++++.++..+... ....++++|+++|++++.++..|.||||.|+..|+.+++++|+
T Consensus 184 v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~----~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll 259 (337)
T 4g8k_A 184 LKILLDEMGADVNACDNMGRNALIHALLSSDDS----DVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL 259 (337)
T ss_dssp HHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTT----THHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhccCCCcCccCCCCCcHHHHHHHHcCcc----cHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHH
Confidence 999996 59999999999999999988776432 2456899999999999999999999999999999999999999
Q ss_pred hC-CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCcccc
Q psy3308 322 KY-GASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDAR 396 (838)
Q Consensus 322 ~~-~~~~~~~~~~~~~~l~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~l~~A~~~g~~~iv~~Ll~~g~~~~~~ 396 (838)
+. |++++..+..|.||||+|+..|+.++|++|+++|++++.. +||++|+..|+.++|++|+++|++++..
T Consensus 260 ~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~-----~~L~~A~~~~~~~iv~~Ll~~GA~~d~~ 330 (337)
T 4g8k_A 260 EQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG-----DLVMTARRNYDHSLVKVLLSHGAKEDFH 330 (337)
T ss_dssp TSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTC-----CHHHHHHHTTCHHHHHHHHHTTCCC---
T ss_pred HhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-----CHHHHHHHcCCHHHHHHHHHCcCCCCCC
Confidence 85 8999999999999999999999999999999999988754 5999999999999999999999999864
No 5
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2e-42 Score=350.88 Aligned_cols=263 Identities=27% Similarity=0.330 Sum_probs=248.4
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhCCCCCCCchhHHHHHhhcCCCcccc-CCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCC
Q psy3308 525 GFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITAT-TKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDS 603 (838)
Q Consensus 525 ~~~~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~ 603 (838)
|.++|+.|+..|+.+++++|++.+.+.. .. +..|.||||.|+..|+.+++++|+++|++++.
T Consensus 5 g~~~L~~A~~~g~~~~v~~Ll~~g~~~~-----------------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~ 67 (285)
T 1wdy_A 5 DNHLLIKAVQNEDVDLVQQLLEGGANVN-----------------FQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 67 (285)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCCTT-----------------CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred cchHHHHHHHcCCHHHHHHHHHcCCCcc-----------------cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcc
Confidence 5678888888888888888887765432 23 56789999999999999999999999999999
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHcCcHHHHHHHHhCCCCCCCC----------CCC
Q psy3308 604 QGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAE----------SKA 673 (838)
Q Consensus 604 ~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~----------~~~ 673 (838)
.+..|.|||++|+..|+.+++++|+++|++++..+..|.||||.|+..|+.+++++|+++|++++.. +..
T Consensus 68 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~ 147 (285)
T 1wdy_A 68 RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKG 147 (285)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCC
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999887 778
Q ss_pred CCcHHHHHHHcCcHHHHHHHHhC-CCCCCCCCCCCCcHhHHHHhcCC----HHHHHHHHhCCCCCCCCCCCCCcHHHHHH
Q psy3308 674 GFTPLHLSAQEGHTDMSSLLIEH-GATVSHQAKNGLTPLHLCAQEDK----VNVATITMFNGAEIDPVTKAGFTPLHIAS 748 (838)
Q Consensus 674 g~t~L~~A~~~g~~~iv~~Ll~~-g~~~~~~~~~~~t~l~~A~~~g~----~~i~~~L~~~~~~~~~~~~~g~t~l~~A~ 748 (838)
|.|||++|+..|+.+++++|+++ |++++..+..|.||||+|+..++ .+++++|+++|++++.++..|+||||+|+
T Consensus 148 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~ 227 (285)
T 1wdy_A 148 GATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV 227 (285)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHH
T ss_pred CCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHH
Confidence 99999999999999999999998 99999999999999999999999 99999999999999999999999999999
Q ss_pred HcCCHHHHHHHHH-CCCCCccCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCCCCC
Q psy3308 749 HFGQLNMVRYLVE-NGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTN 804 (838)
Q Consensus 749 ~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ga~~~~~~~ 804 (838)
..|+.+++++|++ .|++++..|..|.|||++|++.|+.+++++|+++|++++.+|.
T Consensus 228 ~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~d~ 284 (285)
T 1wdy_A 228 EKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL 284 (285)
T ss_dssp HTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred HcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccc
Confidence 9999999999999 7999999999999999999999999999999999999999874
No 6
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=6.1e-42 Score=358.93 Aligned_cols=287 Identities=26% Similarity=0.330 Sum_probs=266.1
Q ss_pred CCCcccCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcH
Q psy3308 85 GATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTP 164 (838)
Q Consensus 85 ~~~~~~~~~~~~t~l~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~Aa~~g~~~iv~~L~~~~~~~~~~~~~~~ta 164 (838)
+.+++.+|..|+||||+|+..|+.++|++|+++|++++..+..|.||||+|+..|+.++|++|+++|++++..+..|.||
T Consensus 48 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~ 127 (351)
T 3utm_A 48 NVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTP 127 (351)
T ss_dssp TTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence 67788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCccCCCCCCccHHHHHHhCCcHHHHHHHHhCCCCCCcccCCCccHHHHHHhcCCHHHHH
Q psy3308 165 LHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAK 244 (838)
Q Consensus 165 l~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~A~~~g~~~iv~ 244 (838)
|++|+..|+.+++++|+++|++++..+..+.+++++|+..+..+.+.+.... .++..++..++.+.++
T Consensus 128 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~ 195 (351)
T 3utm_A 128 LHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKG------------HSLLQAAREADLAKVK 195 (351)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHH------------HHHHHHHHTTCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcc------------cHHHHHHHhccHHHHH
Confidence 9999999999999999999999999999999999999999999999887653 5788999999999999
Q ss_pred HHHHCCCCccccccCCCchHHHHHhhCCccccccChHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy3308 245 TLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYG 324 (838)
Q Consensus 245 ~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~L~~~~ 324 (838)
.++..+......+..+.|||+.|+..+.. +..+++++|++.|++++.++..|.||||.|+..|+.+++++|+++|
T Consensus 196 ~~l~~~~~~~~~~~~~~t~L~~A~~~~~~-----~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 270 (351)
T 3utm_A 196 KTLALEIINFKQPQSHETALHCAVASLHP-----KRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHG 270 (351)
T ss_dssp HHTTTCCTTCCCTTTCCCHHHHHHHCCST-----THHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHhhcccccCCCCCCCHHHHHHHHhCc-----cHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 99988766666778899999999998643 2688999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCC
Q psy3308 325 ASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGAS 392 (838)
Q Consensus 325 ~~~~~~~~~~~~~l~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~l~~A~~~g~~~iv~~Ll~~g~~ 392 (838)
++++..+..|.|||++|+..|+.+++++|+++|++++..+..|.||+++| ..+++++|.+.+..
T Consensus 271 a~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a----~~~~~~~l~~~~~~ 334 (351)
T 3utm_A 271 AKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG----NEAVQQILSESTPM 334 (351)
T ss_dssp CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHS----CHHHHHHHHHC---
T ss_pred CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhhhh----hHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999987 67899999987553
No 7
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=2.3e-41 Score=354.51 Aligned_cols=322 Identities=24% Similarity=0.334 Sum_probs=226.3
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhC-CCCCCCCCCCCChHHHHHHHhCcHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCC
Q psy3308 459 DQTPLHVASRLGNGDIASLLLQH-GASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGR 537 (838)
Q Consensus 459 ~~~~l~~a~~~~~~~~v~~L~~~-~~~~~~~~~~~~~~l~~A~~~~~~e~v~~L~~~~~~~~~~~~~~~~~l~~A~~~g~ 537 (838)
+.++|+.|+..|+.+.+++|+.. +.+++..+..|.||||.|+..|+.+++++|++.|++++.++..|.|||++|+..|+
T Consensus 24 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~ 103 (351)
T 3utm_A 24 KKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGH 103 (351)
T ss_dssp HHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred cchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCC
Confidence 34555556666666555555543 45555555566666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHhCCCCCCCchhHHHHHhhcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHH
Q psy3308 538 MKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASH 617 (838)
Q Consensus 538 ~~~~~~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~A~~ 617 (838)
.+++++|++++.+ ++..+..|.|||+.|+..|+.+++++|+++|++++..+..|.+|++.|+.
T Consensus 104 ~~iv~~Ll~~g~~-----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~ 166 (351)
T 3utm_A 104 YEVTELLLKHGAC-----------------VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPT 166 (351)
T ss_dssp HHHHHHHHHTTCC-----------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSS
T ss_pred HHHHHHHHHCCCC-----------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhh
Confidence 6666666655432 33445566777777777777888888888888888888888888888887
Q ss_pred cCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHc---CcHHHHHHHH
Q psy3308 618 YDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQE---GHTDMSSLLI 694 (838)
Q Consensus 618 ~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~g~t~L~~A~~~---g~~~iv~~Ll 694 (838)
.+..+.+.+... ..++..++..++.+.++.++..+......+..|.|||++|+.. +..+++++|+
T Consensus 167 ~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll 234 (351)
T 3utm_A 167 PELRERLTYEFK------------GHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLL 234 (351)
T ss_dssp HHHHHHHHHHHH------------HHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHH
T ss_pred hhhHHHHHhhhc------------ccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHH
Confidence 777777776653 2567778888888888888877665556677788888888888 5578888888
Q ss_pred hCCCCCCCCCCCCCcHhHHHHhcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCC
Q psy3308 695 EHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGY 774 (838)
Q Consensus 695 ~~g~~~~~~~~~~~t~l~~A~~~g~~~i~~~L~~~~~~~~~~~~~g~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~ 774 (838)
++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++|++|+++|++++..|..|+
T Consensus 235 ~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~ 314 (351)
T 3utm_A 235 RKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGF 314 (351)
T ss_dssp HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred HcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cHHHHHHHhCcHHHHHHHHhCCCCCCCCCCccch-HHHHHHcC
Q psy3308 775 TPLHQASQQGRVLIIDLLLGAGAQPNATTNLFCC-ATILVKNG 816 (838)
Q Consensus 775 t~l~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~-~~~~~~~~ 816 (838)
||+++| +.+++++|.+.+.. +...+.+ +..|+++|
T Consensus 315 tal~~a----~~~~~~~l~~~~~~---~~~~~~~~l~~A~~~g 350 (351)
T 3utm_A 315 TAAQMG----NEAVQQILSESTPM---RTSDVDYRLLEASKAG 350 (351)
T ss_dssp CHHHHS----CHHHHHHHHHC----------------------
T ss_pred Chhhhh----hHHHHHHHHhcccc---ccCcceeehhhhhccC
Confidence 888887 67788888887542 2344555 66666665
No 8
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=4.5e-43 Score=367.12 Aligned_cols=318 Identities=22% Similarity=0.263 Sum_probs=228.0
Q ss_pred CHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCChHHHHHHHhCcHHH
Q psy3308 428 TPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEV 507 (838)
Q Consensus 428 ~~l~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~L~~~~~~~~~~~~~~~~~l~~A~~~~~~e~ 507 (838)
.+|..++..|+.+.++.+++...++. ...+++..+...|+++++++++.. ..+..|.|+||.|+..+. ++
T Consensus 39 ~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~g~t~L~~Aa~~~~-~~ 108 (373)
T 2fo1_E 39 HSLLEASYDGYIKRQRNELQHYSLYP----NPQGYGNGNDFLGDFNHTNLQIPT-----EPEPESPIKLHTEAAGSY-AI 108 (373)
T ss_dssp ----------------------------------------------------------------CCCHHHHHHHSSS-CC
T ss_pred cccccccCCccccchhhhhhhhcccc----CccccCCCCCcccccccccccccc-----CCCCCCccHHHHHhcCCc-hH
Confidence 34555666677777777666544432 122334455566677777666543 345566777777776443 56
Q ss_pred HHHHHHCCCCCcccC-CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCchhHHHHHhhcCCCccccCCCCCcHHHHHHHcC
Q psy3308 508 ASILTESGASITATT-KKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYG 586 (838)
Q Consensus 508 v~~L~~~~~~~~~~~-~~~~~~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~ 586 (838)
+++|+. .+++..+ ..|.|||++|+..|+.+++++|+.
T Consensus 109 ~~~L~~--~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~---------------------------------------- 146 (373)
T 2fo1_E 109 TEPITR--ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIV---------------------------------------- 146 (373)
T ss_dssp CSCCST--TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHH----------------------------------------
T ss_pred HHHhcc--ccccccCCcCCCCHHHHHHHCCCHHHHHHHHH----------------------------------------
Confidence 665543 3444455 566667766666666666666652
Q ss_pred cHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHcCcHHHHHHHHhCC--
Q psy3308 587 RMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYN-- 664 (838)
Q Consensus 587 ~~~~v~~Ll~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~-- 664 (838)
..++.|++.|+++|.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++++
T Consensus 147 --~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~ 224 (373)
T 2fo1_E 147 --HEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKL 224 (373)
T ss_dssp --HHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHH
T ss_pred --HHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCcc
Confidence 2345667899999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred -CCCCCCCCCCCcHHHHHHHcC---cHHHHHHHHhCCCCCCC--------CCCCCCcHhHHHHhcCCHHHHHHHHhCC-C
Q psy3308 665 -AKPNAESKAGFTPLHLSAQEG---HTDMSSLLIEHGATVSH--------QAKNGLTPLHLCAQEDKVNVATITMFNG-A 731 (838)
Q Consensus 665 -~~~~~~~~~g~t~L~~A~~~g---~~~iv~~Ll~~g~~~~~--------~~~~~~t~l~~A~~~g~~~i~~~L~~~~-~ 731 (838)
.+++..+..|.|||++|+..+ +.+++++|+++|++++. .+..|.||||+|+..|+.+++++|++++ +
T Consensus 225 ~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~ 304 (373)
T 2fo1_E 225 KGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGS 304 (373)
T ss_dssp HHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCC
T ss_pred ccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCC
Confidence 789999999999999999998 89999999999999886 5678999999999999999999999876 9
Q ss_pred CCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCC
Q psy3308 732 EIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP 799 (838)
Q Consensus 732 ~~~~~~~~g~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ga~~ 799 (838)
+++.+|..|+||||+|+..|+.++|++|+++|++++..|..|.|||++|+.+|+.++|++|+++|++.
T Consensus 305 ~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~~ 372 (373)
T 2fo1_E 305 NKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER 372 (373)
T ss_dssp CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC---
T ss_pred CccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999864
No 9
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.5e-41 Score=341.81 Aligned_cols=267 Identities=31% Similarity=0.342 Sum_probs=226.4
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHHCCCCCCcc-ccCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcHHHHHHHcC
Q psy3308 94 NGFTPLYMAAQENHDGVVRYLLSKGGNQTLA-TEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSG 172 (838)
Q Consensus 94 ~~~t~l~~A~~~g~~~~v~~L~~~~~~~~~~-~~~~~~~l~~Aa~~g~~~iv~~L~~~~~~~~~~~~~~~tal~~A~~~g 172 (838)
.|.|+|+.|++.|++++|++|+++|.+++.. +..|.||||+|+..|+.++|++|+++|++++..+..|.|||++|+..|
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 83 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG 83 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcC
Confidence 4678899999999999999999998888877 677889999999999999999999999998888889999999999999
Q ss_pred CHHHHHHHHHcCCCccCCCCCCccHHHHHHhCCcHHHHHHHHhCCCCCCcc----------cCCCccHHHHHHhcCCHHH
Q psy3308 173 HDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEI----------TVDYLTALHVASHCGHVRV 242 (838)
Q Consensus 173 ~~~iv~~L~~~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~L~~~~~~~~~~----------~~~~~~~l~~A~~~g~~~i 242 (838)
+.+++++|+++|++++..+..|.|||++|+..|+.+++++|+++|++++.. +..+.|||+.|+..|+.++
T Consensus 84 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~ 163 (285)
T 1wdy_A 84 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV 163 (285)
T ss_dssp CHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHH
T ss_pred CHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHH
Confidence 999999999999988888888999999999999999999999998887765 5667889999999999999
Q ss_pred HHHHHHC-CCCccccccCCCchHHHHHhhCCccccccChHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy3308 243 AKTLLDR-KADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLL 321 (838)
Q Consensus 243 v~~L~~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~L~ 321 (838)
+++|++. |++++..+..|.+||+.|+..+... ...+++++|++.|++++.++..|.||||.|+..|+.+++++|+
T Consensus 164 v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~----~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 239 (285)
T 1wdy_A 164 LKILLDEMGADVNACDNMGRNALIHALLSSDDS----DVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL 239 (285)
T ss_dssp HHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTT----THHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhcCCCCCccCCCCCCHHHHHHHccccc----hHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 9999987 8888888888888888888876422 1367888888888888888888888888888888888888888
Q ss_pred h-CCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy3308 322 K-YGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTAT 364 (838)
Q Consensus 322 ~-~~~~~~~~~~~~~~~l~~A~~~g~~~iv~~Ll~~~~~~~~~~ 364 (838)
+ .|++++..+..|.|||++|+..|+.+++++|+++|++++..|
T Consensus 240 ~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~d 283 (285)
T 1wdy_A 240 EQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283 (285)
T ss_dssp HSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSS
T ss_pred hccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCccc
Confidence 7 778888788888888888888888888888888888777665
No 10
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.5e-40 Score=333.96 Aligned_cols=269 Identities=23% Similarity=0.262 Sum_probs=212.8
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCchhHHHHHhhcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCC
Q psy3308 523 KKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVD 602 (838)
Q Consensus 523 ~~~~~~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~ 602 (838)
..+.|++|+|+..|+.+.+..++..++....... + ....++..+..|.||||.|+..|+.+++++|++.|++++
T Consensus 13 ~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~----l--~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~ 86 (285)
T 3d9h_A 13 GLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIR----L--LSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVN 86 (285)
T ss_dssp -----------------------------CCSEE----C--CCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSC
T ss_pred hHHHHHHHHHhhcCCCCCcccCCCCccccccchh----h--hhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence 4567788888888876666655444322110000 0 011245678889999999999999999999999999999
Q ss_pred CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHH
Q psy3308 603 SQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSA 682 (838)
Q Consensus 603 ~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~g~t~L~~A~ 682 (838)
.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+..|+.+++++|+++|++++..+ .|.|||++|+
T Consensus 87 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~ 165 (285)
T 3d9h_A 87 IITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAA 165 (285)
T ss_dssp EECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHH
T ss_pred CcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999988654 4899999999
Q ss_pred HcCcHHHHHHHHhCCCCCCCCCCCCCcHhHHHHhcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHC
Q psy3308 683 QEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVEN 762 (838)
Q Consensus 683 ~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~i~~~L~~~~~~~~~~~~~g~t~l~~A~~~g~~~~v~~Ll~~ 762 (838)
..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++. +..|.||||+|+..|+.+++++|+++
T Consensus 166 ~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~ 244 (285)
T 3d9h_A 166 RRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDF 244 (285)
T ss_dssp HHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999984 88899999999999999999999999
Q ss_pred CCCCccCCCCCCcHHHHHHHhCcHHHHHHHHhC-CCCCCC
Q psy3308 763 GANVNATTNLGYTPLHQASQQGRVLIIDLLLGA-GAQPNA 801 (838)
Q Consensus 763 g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~-ga~~~~ 801 (838)
|++++.+|..|+|||++|+ ++.+++++|+++ |+++..
T Consensus 245 gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l~~ 282 (285)
T 3d9h_A 245 GADTQAKNAEGKRPVELVP--PESPLAQLFLEREGASLPK 282 (285)
T ss_dssp TCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC------
T ss_pred CCCCCCcCCCCCCHHHHhc--CccHHHHHHHHhhccCCCC
Confidence 9999999999999999999 557899999998 887654
No 11
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=1.8e-41 Score=354.93 Aligned_cols=318 Identities=20% Similarity=0.219 Sum_probs=212.4
Q ss_pred CcHHhHHHhcCCHHHHHHHHhccccccchhhcccCcchhhhccchhhhhcCcHHHHHHHHHCCCCcccCCCCCCcHHHHH
Q psy3308 23 LPALHIAAKKDDCKAAALLLEVSFSNTKLEVSLSNTKLEVSLSNTKFEATGQEEVAKILVDNGATINVQSLNGFTPLYMA 102 (838)
Q Consensus 23 ~~al~~Aa~~g~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~l~~~~~~~~~~~~~~~t~l~~A 102 (838)
..+|..|+..|+.+.++.+++.... ..+. ......+...|+++++++++.. .++..|.||||.|
T Consensus 38 ~~~l~~~~~~~~~~~~~~~~~~~~~----------~~~~-~~~~~~~~~~g~~~~~~~~~~~-----~~~~~g~t~L~~A 101 (373)
T 2fo1_E 38 QHSLLEASYDGYIKRQRNELQHYSL----------YPNP-QGYGNGNDFLGDFNHTNLQIPT-----EPEPESPIKLHTE 101 (373)
T ss_dssp ------------------------------------------------------------------------CCCHHHHH
T ss_pred ccccccccCCccccchhhhhhhhcc----------ccCc-cccCCCCCcccccccccccccc-----CCCCCCccHHHHH
Confidence 4568888899999999998872111 0011 1112335667999999988764 4678899999999
Q ss_pred HHcCcHHHHHHHHHCCCCCCccc-cCCCcHHHHHHHcCCHHHHHHHH--------HcCCCCccccCCCCcHHHHHHHcCC
Q psy3308 103 AQENHDGVVRYLLSKGGNQTLAT-EHNITPLHVACKWGKVAMVELLI--------SKGANIEAKTRDGLTPLHCAARSGH 173 (838)
Q Consensus 103 ~~~g~~~~v~~L~~~~~~~~~~~-~~~~~~l~~Aa~~g~~~iv~~L~--------~~~~~~~~~~~~~~tal~~A~~~g~ 173 (838)
+..| .+++++|+.. +++..+ ..|.||||+||.+|+.++|++|+ +.|++++..+..|.||||+|+..|+
T Consensus 102 a~~~-~~~~~~L~~~--~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~ 178 (373)
T 2fo1_E 102 AAGS-YAITEPITRE--SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARR 178 (373)
T ss_dssp HHSS-SCCCSCCSTT--TTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTC
T ss_pred hcCC-chHHHHhccc--cccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcCh
Confidence 9955 4899988754 556777 78999999999999999888886 7899999999999999999999999
Q ss_pred HHHHHHHHHcCCCccCCCCCCccHHHHHHhCCcHHHHHHHHhCC---CCCCcccCCCccHHHHHHhcC---CHHHHHHHH
Q psy3308 174 DNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHG---AGVDEITVDYLTALHVASHCG---HVRVAKTLL 247 (838)
Q Consensus 174 ~~iv~~L~~~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~L~~~~---~~~~~~~~~~~~~l~~A~~~g---~~~iv~~L~ 247 (838)
.++|++|++.|++++..+..|.|||++|+..|+.+++++|++++ .+++..+..+.|||++|+..| +.+++++|+
T Consensus 179 ~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll 258 (373)
T 2fo1_E 179 RRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLV 258 (373)
T ss_dssp HHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999988 788888999999999999998 899999999
Q ss_pred HCCCCccccccCCCchHHHHHhhCCccccccChHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC-CC
Q psy3308 248 DRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYG-AS 326 (838)
Q Consensus 248 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~L~~~~-~~ 326 (838)
+.|++++..... ..+..+..|.||||.|+..|+.++|++|++++ ++
T Consensus 259 ~~g~~~~~~~~~---------------------------------~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~ 305 (373)
T 2fo1_E 259 EKGAKVDYDGAA---------------------------------RKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN 305 (373)
T ss_dssp HHTCCSSCCSGG---------------------------------GTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCC
T ss_pred HCCCCccccccc---------------------------------ccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCC
Confidence 999988864210 01223455666677777667777777776654 66
Q ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCC
Q psy3308 327 IAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGAS 392 (838)
Q Consensus 327 ~~~~~~~~~~~l~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~l~~A~~~g~~~iv~~Ll~~g~~ 392 (838)
++..+..|.|||++|+..|+.++|++|+++|++++..+..|.|||++|+..|+.+++++|++++++
T Consensus 306 ~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~ 371 (373)
T 2fo1_E 306 KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPE 371 (373)
T ss_dssp TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC--
T ss_pred ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence 666666666777777777777777777777766666666667777777777777777777666654
No 12
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.7e-40 Score=333.59 Aligned_cols=261 Identities=23% Similarity=0.248 Sum_probs=213.9
Q ss_pred CCCCCcHHHHHHHcCcHHHHHHHHhCC-----------CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccCCC
Q psy3308 572 TKKGFTPLHLAAKYGRMKIAQMLLQKD-----------APVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKN 640 (838)
Q Consensus 572 ~~~~~~~l~~a~~~~~~~~v~~Ll~~~-----------~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~ 640 (838)
...+.|++|+|+..|+.+.+..++..+ ..++.++..|.||||+|+..|+.+++++|++.|++++..+..
T Consensus 12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~ 91 (285)
T 3d9h_A 12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITAD 91 (285)
T ss_dssp ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTT
T ss_pred chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC
Confidence 346789999999999987777665442 235667889999999999999999999999999999999999
Q ss_pred CChHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHhHHHHhcCCH
Q psy3308 641 GYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKV 720 (838)
Q Consensus 641 ~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~ 720 (838)
|.||||+|+..|+.+++++|+++|++++..+..|.|||++|+..|+.+++++|+++|++++..+ .|.||||+|+..|+.
T Consensus 92 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~ 170 (285)
T 3d9h_A 92 HVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHV 170 (285)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCH
T ss_pred CCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCH
Confidence 9999999999999999999999999999999999999999999999999999999999998654 599999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCC
Q psy3308 721 NVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 800 (838)
Q Consensus 721 ~i~~~L~~~~~~~~~~~~~g~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ga~~~ 800 (838)
+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++. +..|.||||+|++.|+.+++++|+++|++++
T Consensus 171 ~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~ 249 (285)
T 3d9h_A 171 ECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQ 249 (285)
T ss_dssp HHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence 999999999999999999999999999999999999999999999995 8889999999999999999999999999999
Q ss_pred CCCCccch-HHHHHHcCCccCcccccccccccccCCCC
Q psy3308 801 ATTNLFCC-ATILVKNGAEIDPVTKLSDEHEKSIDLPN 837 (838)
Q Consensus 801 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 837 (838)
.+|..|.| +++|+.+ .+.++.|++...-+++.|.
T Consensus 250 ~~d~~g~t~l~~A~~~---~~~~~~Ll~~~~a~l~~~~ 284 (285)
T 3d9h_A 250 AKNAEGKRPVELVPPE---SPLAQLFLEREGASLPKPK 284 (285)
T ss_dssp CCCTTSCCGGGGSCTT---SHHHHHHHHHC--------
T ss_pred CcCCCCCCHHHHhcCc---cHHHHHHHHhhccCCCCCC
Confidence 99999999 9999933 4778888887777887774
No 13
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=9.4e-40 Score=322.81 Aligned_cols=231 Identities=27% Similarity=0.347 Sum_probs=175.6
Q ss_pred CccccCCCCCcHHHHHHHcC-------------cHHHHHHHHhCCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy3308 567 SITATTKKGFTPLHLAAKYG-------------RMKIAQMLLQKDAPVDS-QGKNGVTPLHVASHYDHQNVALLLLDRGA 632 (838)
Q Consensus 567 ~~~~~~~~~~~~l~~a~~~~-------------~~~~v~~Ll~~~~~~~~-~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~ 632 (838)
+++.++..|.||||.|+..| +.+++++|++.|++++. .+..|.||||+|+..|+.+++++|+++|+
T Consensus 2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~ 81 (253)
T 1yyh_A 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA 81 (253)
T ss_dssp --------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence 56778889999999999977 88999999999988865 47889999999999999999999999999
Q ss_pred CCCccCCCCChHHHHHHHcCcHHHHHHHHhCCC-CCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHh
Q psy3308 633 SPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNA-KPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPL 711 (838)
Q Consensus 633 ~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~-~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l 711 (838)
+++..+..|.||||+|+..|+.+++++|++++. +++..+..|.|||++|+..|+.+++++|+++|++++.++..|.|||
T Consensus 82 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L 161 (253)
T 1yyh_A 82 DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSAL 161 (253)
T ss_dssp CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHH
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence 999999899999999999999999999999886 8888888999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHhCcHHHHHH
Q psy3308 712 HLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDL 791 (838)
Q Consensus 712 ~~A~~~g~~~i~~~L~~~~~~~~~~~~~g~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~ 791 (838)
|+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|.|||++|++.|+.+|+++
T Consensus 162 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~ 241 (253)
T 1yyh_A 162 HWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRL 241 (253)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCC
Q psy3308 792 LLGAGA 797 (838)
Q Consensus 792 Ll~~ga 797 (838)
|.+...
T Consensus 242 l~~~~~ 247 (253)
T 1yyh_A 242 LDLEHH 247 (253)
T ss_dssp HHC---
T ss_pred HHHHhh
Confidence 987643
No 14
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=6.6e-40 Score=325.37 Aligned_cols=241 Identities=23% Similarity=0.305 Sum_probs=225.7
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHcCc
Q psy3308 574 KGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQ 653 (838)
Q Consensus 574 ~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~ 653 (838)
.|+||||.|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+..|+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 81 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGS 81 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHhHHHHhcCCHHHHHHHHhCCCCC
Q psy3308 654 MDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEI 733 (838)
Q Consensus 654 ~~iv~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~i~~~L~~~~~~~ 733 (838)
.+++++|+++|++++.. ..|.|||++|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|+++
T Consensus 82 ~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 160 (261)
T 2xai_A 82 WDCVNLLLQHGASVQPE-SDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADV 160 (261)
T ss_dssp HHHHHHHHHTTCCSSCS-CTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHCCCCCCCC-CCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence 99999999999998854 45899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCC--------CCCCCc
Q psy3308 734 DPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP--------NATTNL 805 (838)
Q Consensus 734 ~~~~~~g~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ga~~--------~~~~~~ 805 (838)
+. +..|+||||+|+..|+.+++++|+++|++++.+|..|+|||++|+..+ +++++|++++..+ +++|..
T Consensus 161 ~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~--~~~~~ll~~~~~~~l~~~~~~~~r~~~ 237 (261)
T 2xai_A 161 NQ-GKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPES--PLAQLFLEREGPPSLMQLCRLRIRKCF 237 (261)
T ss_dssp TC-CBTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCTTC--THHHHHHHC-CCCCHHHHHHHHHHTTS
T ss_pred CC-CCCCCChHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCChhhhccccc--cHHHHHHhccCCccHHHHHHHHHHHHh
Confidence 85 889999999999999999999999999999999999999999999665 4899999998755 478889
Q ss_pred cch-HHHHHHcCCc
Q psy3308 806 FCC-ATILVKNGAE 818 (838)
Q Consensus 806 ~~~-~~~~~~~~~~ 818 (838)
|.| ++++.+...+
T Consensus 238 g~t~l~~~~~~~~p 251 (261)
T 2xai_A 238 GIQQHHKITKLVLP 251 (261)
T ss_dssp CTTCGGGGGGSSSC
T ss_pred chhccccCcccCCc
Confidence 999 8888877654
No 15
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=1.7e-39 Score=320.96 Aligned_cols=232 Identities=29% Similarity=0.356 Sum_probs=185.1
Q ss_pred CCCCCCCCCCcHHHHHHHcC-------------CHHHHHHHHhCCCCCCcc-CCCCChHHHHHHHcCcHHHHHHHHhCCC
Q psy3308 600 PVDSQGKNGVTPLHVASHYD-------------HQNVALLLLDRGASPHAV-AKNGYTPLHIAAKKNQMDIATTLLEYNA 665 (838)
Q Consensus 600 ~~~~~~~~~~~~l~~A~~~~-------------~~~~v~~Ll~~g~~~~~~-~~~~~t~L~~A~~~~~~~iv~~Ll~~~~ 665 (838)
++|.+|..|.||||+|+..| +.+++++|+++|++++.. +..|.||||+|+..|+.+++++|+++|+
T Consensus 2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~ 81 (253)
T 1yyh_A 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA 81 (253)
T ss_dssp --------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence 67889999999999999977 899999999999998654 7899999999999999999999999999
Q ss_pred CCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCC-CCCCCCCCCCcHhHHHHhcCCHHHHHHHHhCCCCCCCCCCCCCcHH
Q psy3308 666 KPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGA-TVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPL 744 (838)
Q Consensus 666 ~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~-~~~~~~~~~~t~l~~A~~~g~~~i~~~L~~~~~~~~~~~~~g~t~l 744 (838)
+++..+..|.|||++|+..|+.+++++|+++|+ +++..+..|.||||+|+..|+.+++++|+++|++++.++..|+|||
T Consensus 82 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L 161 (253)
T 1yyh_A 82 DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSAL 161 (253)
T ss_dssp CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHH
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence 999999999999999999999999999999987 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCCCCCccch-HHHHHHcCCccCccc
Q psy3308 745 HIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNLFCC-ATILVKNGAEIDPVT 823 (838)
Q Consensus 745 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~-~~~~~~~~~~~~~~~ 823 (838)
|+|+..|+.+++++|+++|++++..|..|.||||+|++.|+.+++++|+++|++++.+|..|.| +++|+++|+ .++++
T Consensus 162 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~-~~i~~ 240 (253)
T 1yyh_A 162 HWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH-HDIVR 240 (253)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC-HHHHH
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCC-HHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 999999999 49998
Q ss_pred ccccccccc
Q psy3308 824 KLSDEHEKS 832 (838)
Q Consensus 824 ~~~~~~~~~ 832 (838)
.|.++.+.+
T Consensus 241 ~l~~~~~~~ 249 (253)
T 1yyh_A 241 LLDLEHHHH 249 (253)
T ss_dssp HHHC-----
T ss_pred HHHHHhhhc
Confidence 888776654
No 16
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=2.6e-38 Score=310.14 Aligned_cols=229 Identities=27% Similarity=0.387 Sum_probs=209.6
Q ss_pred CCccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHH
Q psy3308 566 ASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPL 645 (838)
Q Consensus 566 ~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L 645 (838)
.+++..+..|.|||+.|+..|+.+++++|+++|++++..+..|.|||++|+..|+.+++++|+++|++++..+..|.|||
T Consensus 2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L 81 (237)
T 3b7b_A 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCL 81 (237)
T ss_dssp CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHH
T ss_pred CCcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHH
Confidence 35677788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCcHHHHHHHHhCC-CCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHhHHHHhcCCHHHHH
Q psy3308 646 HIAAKKNQMDIATTLLEYN-AKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVAT 724 (838)
Q Consensus 646 ~~A~~~~~~~iv~~Ll~~~-~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~i~~ 724 (838)
|.|+..|+.+++++|++.| .+++..+..|.|||++|+..|+.+++++|+++|++++..+..|.||||+|+..|+.++++
T Consensus 82 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~ 161 (237)
T 3b7b_A 82 HLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAE 161 (237)
T ss_dssp HHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHH
T ss_pred HHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHH
Confidence 9999999999999999988 788888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHhCcHHHHHHHHh
Q psy3308 725 ITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLG 794 (838)
Q Consensus 725 ~L~~~~~~~~~~~~~g~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~ 794 (838)
+|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+.+|+...+..|++
T Consensus 162 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~ 231 (237)
T 3b7b_A 162 ILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSK 231 (237)
T ss_dssp HHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred HHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998866655554
No 17
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=8.1e-39 Score=314.92 Aligned_cols=229 Identities=28% Similarity=0.388 Sum_probs=208.9
Q ss_pred cccCCCCCcHHHHHHHcCcHHHHHHHHh----CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChH
Q psy3308 569 TATTKKGFTPLHLAAKYGRMKIAQMLLQ----KDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTP 644 (838)
Q Consensus 569 ~~~~~~~~~~l~~a~~~~~~~~v~~Ll~----~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~ 644 (838)
+.+|..|.||||.|+..|+.+++++|++ .+.+++..+..|.|||++|+..|+.+++++|+++|++++..+..|.||
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 82 (241)
T 1k1a_A 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA 82 (241)
T ss_dssp ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence 4567789999999999999999999997 789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCcHHHHHHHHhCCC----CCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCC-CCCCcHhHHHHhcCC
Q psy3308 645 LHIAAKKNQMDIATTLLEYNA----KPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQA-KNGLTPLHLCAQEDK 719 (838)
Q Consensus 645 L~~A~~~~~~~iv~~Ll~~~~----~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~-~~~~t~l~~A~~~g~ 719 (838)
||.|+..|+.+++++|++.+. +++..+..|.|||++|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+
T Consensus 83 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~ 162 (241)
T 1k1a_A 83 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNS 162 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCC
Confidence 999999999999999999887 888889999999999999999999999999999999888 789999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHhCcHHHHHHHHhCCC
Q psy3308 720 VNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGA 797 (838)
Q Consensus 720 ~~i~~~L~~~~~~~~~~~~~g~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ga 797 (838)
.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+.++++.|.+.++
T Consensus 163 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~a 240 (241)
T 1k1a_A 163 LSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240 (241)
T ss_dssp HHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC------
T ss_pred HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998765
No 18
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=2.5e-40 Score=347.02 Aligned_cols=234 Identities=24% Similarity=0.292 Sum_probs=219.2
Q ss_pred CCccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHH
Q psy3308 566 ASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPL 645 (838)
Q Consensus 566 ~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L 645 (838)
.+.+..+..|.||||.|+..|+.++|++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++. ..|.|||
T Consensus 11 ~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L 88 (364)
T 3ljn_A 11 LNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPI 88 (364)
T ss_dssp -----CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHH
T ss_pred CCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHH
Confidence 34566778899999999999999999999999999999999999999999999999999999999996664 4789999
Q ss_pred HHHHHcCcHHHHHHHHhC----CCCCCC-----------------CCCCCCcHHHHHHHcC--cHHHHHHHHhCCCCCCC
Q psy3308 646 HIAAKKNQMDIATTLLEY----NAKPNA-----------------ESKAGFTPLHLSAQEG--HTDMSSLLIEHGATVSH 702 (838)
Q Consensus 646 ~~A~~~~~~~iv~~Ll~~----~~~~~~-----------------~~~~g~t~L~~A~~~g--~~~iv~~Ll~~g~~~~~ 702 (838)
|.|+..|+.+++++|+++ |.+++. .+..|.|||++|+..| +.++|++|+++|++++.
T Consensus 89 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~ 168 (364)
T 3ljn_A 89 HLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTA 168 (364)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTC
T ss_pred HHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcc
Confidence 999999999999999998 777766 7888999999999999 99999999999999999
Q ss_pred CCCCCCcHhHHHHhcCCHHHHHHHHhCCCC-----CCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHH
Q psy3308 703 QAKNGLTPLHLCAQEDKVNVATITMFNGAE-----IDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPL 777 (838)
Q Consensus 703 ~~~~~~t~l~~A~~~g~~~i~~~L~~~~~~-----~~~~~~~g~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l 777 (838)
.+..|.||||+|+..|+.+++++|+++|++ ++.++..|+||||+|+..|+.++|++|+++|++++..|..|+|||
T Consensus 169 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL 248 (364)
T 3ljn_A 169 KDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPL 248 (364)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence 999999999999999999999999999998 999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCcHHHHHHHHhCCCCCCC
Q psy3308 778 HQASQQGRVLIIDLLLGAGAQPNA 801 (838)
Q Consensus 778 ~~A~~~~~~~~v~~Ll~~ga~~~~ 801 (838)
++|++.|+.++|++|+++|++++.
T Consensus 249 ~~A~~~g~~~~v~~Ll~~~~~~~~ 272 (364)
T 3ljn_A 249 YLSVRAAMVLLTKELLQKTDVFLI 272 (364)
T ss_dssp HHHHHTCCHHHHHHHHHHSCHHHH
T ss_pred HHHHHhChHHHHHHHHHcCCchhh
Confidence 999999999999999999988644
No 19
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=3.4e-38 Score=307.90 Aligned_cols=226 Identities=25% Similarity=0.356 Sum_probs=217.4
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHhCCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHcC
Q psy3308 574 KGFTPLHLAAKYGRMKIAQMLLQKDAP-VDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKN 652 (838)
Q Consensus 574 ~~~~~l~~a~~~~~~~~v~~Ll~~~~~-~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~ 652 (838)
.+.+||+.|+..|+.+++++|++.+.. ++..+..|.|||++|+..|+.+++++|+++|++++..+..|.||||.|+..|
T Consensus 5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 84 (231)
T 3aji_A 5 VSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAG 84 (231)
T ss_dssp CSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHT
T ss_pred cccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcC
Confidence 467999999999999999999987644 6778899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHhHHHHhcCCHHHHHHHHhCCCC
Q psy3308 653 QMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAE 732 (838)
Q Consensus 653 ~~~iv~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~i~~~L~~~~~~ 732 (838)
+.+++++|+++|++++..+..|.|||++|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++
T Consensus 85 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 164 (231)
T 3aji_A 85 XDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAS 164 (231)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCC
Q psy3308 733 IDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP 799 (838)
Q Consensus 733 ~~~~~~~g~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ga~~ 799 (838)
++.++..|+||||+|+..|+.+++++|+++|++++.+|..|.|||++|++.++.+++++|.++|+++
T Consensus 165 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~i 231 (231)
T 3aji_A 165 TNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEASM 231 (231)
T ss_dssp SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHCC
T ss_pred ccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHccccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999998763
No 20
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=2.6e-38 Score=313.85 Aligned_cols=250 Identities=22% Similarity=0.305 Sum_probs=230.6
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhCCCCCCCchhHHHHHhhcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCC
Q psy3308 524 KGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDS 603 (838)
Q Consensus 524 ~~~~~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~ 603 (838)
.|.|||++|+..|+.+++++|++.+. +++..+..|.||||.|+..|+.+++++|+++|++++.
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~-----------------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~ 64 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGW-----------------AVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 64 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTC-----------------CSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCC-----------------CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence 47899999999999999999998754 4566788999999999999999999999999999999
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHH
Q psy3308 604 QGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQ 683 (838)
Q Consensus 604 ~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~g~t~L~~A~~ 683 (838)
.+..|.|||++|+..|+.+++++|+++|++++. +..|.||||.|+..|+.+++++|+++|++++..+..|.||||+|+.
T Consensus 65 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 143 (261)
T 2xai_A 65 VTADWHTPLFNACVSGSWDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACE 143 (261)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSC-SCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Confidence 999999999999999999999999999999985 4569999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHhCCCCCCCCCCCCCcHhHHHHhcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCC
Q psy3308 684 EGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENG 763 (838)
Q Consensus 684 ~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~i~~~L~~~~~~~~~~~~~g~t~l~~A~~~g~~~~v~~Ll~~g 763 (838)
.|+.+++++|+++|++++. +..|.||||+|+..|+.+++++|+++|++++.+|..|+|||++|+..+ +++++|++++
T Consensus 144 ~~~~~~v~~Ll~~g~~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~--~~~~~ll~~~ 220 (261)
T 2xai_A 144 NQQRACVKKLLESGADVNQ-GKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPES--PLAQLFLERE 220 (261)
T ss_dssp TTCHHHHHHHHHHTCCTTC-CBTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCTTC--THHHHHHHC-
T ss_pred hCCHHHHHHHHHcCCCCCC-CCCCCChHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCChhhhccccc--cHHHHHHhcc
Confidence 9999999999999999995 789999999999999999999999999999999999999999999766 5899999987
Q ss_pred CC--------CccCCCCCCcHHHHHHHhCcHHHHHHHHh
Q psy3308 764 AN--------VNATTNLGYTPLHQASQQGRVLIIDLLLG 794 (838)
Q Consensus 764 ~~--------~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~ 794 (838)
.. ++.+|..|.||+|.|.+...++.++-++.
T Consensus 221 ~~~~l~~~~~~~~r~~~g~t~l~~~~~~~~p~~l~~~l~ 259 (261)
T 2xai_A 221 GPPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDLKQFLL 259 (261)
T ss_dssp CCCCHHHHHHHHHHTTSCTTCGGGGGGSSSCHHHHHHHT
T ss_pred CCccHHHHHHHHHHHHhchhccccCcccCCcHHHHHHHh
Confidence 64 45688999999999999988888777664
No 21
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=3e-39 Score=338.79 Aligned_cols=232 Identities=22% Similarity=0.220 Sum_probs=166.6
Q ss_pred CCCcccCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcH
Q psy3308 85 GATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTP 164 (838)
Q Consensus 85 ~~~~~~~~~~~~t~l~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~Aa~~g~~~iv~~L~~~~~~~~~~~~~~~ta 164 (838)
+.+++..|..|+||||+||..|+.++|++|+++|++++..+..|.||||+||..|+.++|++|+++|+++ .+..|.||
T Consensus 10 ~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~~g~t~ 87 (364)
T 3ljn_A 10 KLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH--SLWHGQKP 87 (364)
T ss_dssp ------CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC--CCBTTBCH
T ss_pred CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc--cccCCCCH
Confidence 3456778889999999999999999999999999999999999999999999999999999999999965 44578999
Q ss_pred HHHHHHcCCHHHHHHHHHc----CCCccC-----------------CCCCCccHHHHHHhCC--cHHHHHHHHhCCCCCC
Q psy3308 165 LHCAARSGHDNVIDILIEK----GAALYS-----------------KTKNGLAPLHMASQGD--HEAATRVLIYHGAGVD 221 (838)
Q Consensus 165 l~~A~~~g~~~iv~~L~~~----~~~~~~-----------------~~~~~~~~l~~A~~~g--~~~~v~~L~~~~~~~~ 221 (838)
|++|+..|+.++|++|++. +.+.+. .+..|.|||++|+..| +.+++++|+++|++++
T Consensus 88 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~ 167 (364)
T 3ljn_A 88 IHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPT 167 (364)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCc
Confidence 9999999999999999998 666544 4556666777777766 6677777776666666
Q ss_pred cccCCCccHHHHHHhcCCHHHHHHHHHCCCC-----ccccccCCCchHHHHHhhCCccccccChHHHHHHHHhCCCCCCC
Q psy3308 222 EITVDYLTALHVASHCGHVRVAKTLLDRKAD-----PNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNA 296 (838)
Q Consensus 222 ~~~~~~~~~l~~A~~~g~~~iv~~L~~~~~~-----~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~ 296 (838)
..+..+.|||++|+..|+.+++++|++.|++ ++..+..|.||||+|+..| +.+++++|+++|++++.
T Consensus 168 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g--------~~~~v~~Ll~~gad~~~ 239 (364)
T 3ljn_A 168 AKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILIN--------WEDVAMRFVEMGIDVNM 239 (364)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTT--------CHHHHHHHHTTTCCTTC
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcC--------CHHHHHHHHHcCCCCCC
Confidence 6666666677777777777666666666665 5555555555555555544 44455555555555555
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHhCCCC
Q psy3308 297 RALNGFTPLHIACKKNRYKVVELLLKYGAS 326 (838)
Q Consensus 297 ~~~~~~~~l~~A~~~g~~~~v~~L~~~~~~ 326 (838)
.+..|.|||+.|+..|+.+++++|+++|++
T Consensus 240 ~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ 269 (364)
T 3ljn_A 240 EDNEHTVPLYLSVRAAMVLLTKELLQKTDV 269 (364)
T ss_dssp CCTTSCCHHHHHHHTCCHHHHHHHHHHSCH
T ss_pred CCCCCCCHHHHHHHhChHHHHHHHHHcCCc
Confidence 555555555555555555555555555443
No 22
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=5.2e-38 Score=307.97 Aligned_cols=228 Identities=22% Similarity=0.326 Sum_probs=217.5
Q ss_pred CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHH
Q psy3308 599 APVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPL 678 (838)
Q Consensus 599 ~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~g~t~L 678 (838)
.+++..+..|.|||++|+..|+.+++++|+++|++++..+..|.||||.|+..|+.+++++|+++|++++..+..|.|||
T Consensus 2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L 81 (237)
T 3b7b_A 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCL 81 (237)
T ss_dssp CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHH
T ss_pred CCcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCcHHHHHHHHhCC-CCCCCCCCCCCcHhHHHHhcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHH
Q psy3308 679 HLSAQEGHTDMSSLLIEHG-ATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVR 757 (838)
Q Consensus 679 ~~A~~~g~~~iv~~Ll~~g-~~~~~~~~~~~t~l~~A~~~g~~~i~~~L~~~~~~~~~~~~~g~t~l~~A~~~g~~~~v~ 757 (838)
++|+..|+.+++++|+++| .+++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.++++
T Consensus 82 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~ 161 (237)
T 3b7b_A 82 HLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAE 161 (237)
T ss_dssp HHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHH
T ss_pred HHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHH
Confidence 9999999999999999998 899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCCccCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCCCCCccch-HHHHHHcCCccCccccccc
Q psy3308 758 YLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNLFCC-ATILVKNGAEIDPVTKLSD 827 (838)
Q Consensus 758 ~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 827 (838)
+|+++|++++..|..|.||||+|++.|+.+++++|+++|++++.+|..|.| +++|+.+++. ..+..+.+
T Consensus 162 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~-~~~~~l~~ 231 (237)
T 3b7b_A 162 ILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQV-WSALQMSK 231 (237)
T ss_dssp HHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHH-HHHHHHHH
T ss_pred HHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHH-HHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 9999998874 44444433
No 23
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.9e-39 Score=318.69 Aligned_cols=230 Identities=22% Similarity=0.304 Sum_probs=181.9
Q ss_pred cCCCCCcHHHHHHHcCcHHHHHHHHhCCCC--------CCCCCCCCCcHHHHHHHcCCH-HHHHHHHhCCCCCCccCCCC
Q psy3308 571 TTKKGFTPLHLAAKYGRMKIAQMLLQKDAP--------VDSQGKNGVTPLHVASHYDHQ-NVALLLLDRGASPHAVAKNG 641 (838)
Q Consensus 571 ~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~--------~~~~~~~~~~~l~~A~~~~~~-~~v~~Ll~~g~~~~~~~~~~ 641 (838)
+|..+.++|+.|+..|+.++|++|++.+.+ ++..+..+.+||+.|+..+.. .++++|++.|++++..+..|
T Consensus 7 kd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G 86 (269)
T 4b93_B 7 KDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDG 86 (269)
T ss_dssp CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTTS
T ss_pred cCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCC
Confidence 455567899999999999999999998875 455677889999999988765 58899999999999999999
Q ss_pred ChHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHhHHHHhcCCHH
Q psy3308 642 YTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVN 721 (838)
Q Consensus 642 ~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~ 721 (838)
+||||+|+..|+.++|++|++.|++++..+..|.||++.|+..++.+++++|+++|++++.++..|.||||+|+..|+.+
T Consensus 87 ~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~ 166 (269)
T 4b93_B 87 SSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHE 166 (269)
T ss_dssp CCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGG
T ss_pred CCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHhCc-HHHHHHHHhCCCCCC
Q psy3308 722 VATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGR-VLIIDLLLGAGAQPN 800 (838)
Q Consensus 722 i~~~L~~~~~~~~~~~~~g~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~-~~~v~~Ll~~ga~~~ 800 (838)
++++|+++|+++|.++..|+||||+|+..|+.++|++|+++|++++.+|..|+|||++|+++++ .+++++|...++..+
T Consensus 167 ~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~~~~ 246 (269)
T 4b93_B 167 LVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVASLD 246 (269)
T ss_dssp GHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCHHHHHTTC---------
T ss_pred HHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhchhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999887 455666666665544
No 24
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=1.3e-37 Score=306.30 Aligned_cols=226 Identities=26% Similarity=0.353 Sum_probs=211.4
Q ss_pred CCCCCCCCcHHHHHHHcCCHHHHHHHHh----CCCCCCccCCCCChHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcH
Q psy3308 602 DSQGKNGVTPLHVASHYDHQNVALLLLD----RGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTP 677 (838)
Q Consensus 602 ~~~~~~~~~~l~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~g~t~ 677 (838)
+.+|..|.||||+|+..|+.+++++|++ .|.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 82 (241)
T 1k1a_A 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA 82 (241)
T ss_dssp ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence 4578899999999999999999999997 799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCcHHHHHHHHhCCC----CCCCCCCCCCcHhHHHHhcCCHHHHHHHHhCCCCCCCCC-CCCCcHHHHHHHcCC
Q psy3308 678 LHLSAQEGHTDMSSLLIEHGA----TVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVT-KAGFTPLHIASHFGQ 752 (838)
Q Consensus 678 L~~A~~~g~~~iv~~Ll~~g~----~~~~~~~~~~t~l~~A~~~g~~~i~~~L~~~~~~~~~~~-~~g~t~l~~A~~~g~ 752 (838)
|++|+..|+.+++++|++.++ +++..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+
T Consensus 83 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~ 162 (241)
T 1k1a_A 83 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNS 162 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCC
Confidence 999999999999999999987 888899999999999999999999999999999999988 889999999999999
Q ss_pred HHHHHHHHHCCCCCccCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCCCCCccch-HHHHHHcCCccCcccccccc
Q psy3308 753 LNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNLFCC-ATILVKNGAEIDPVTKLSDE 828 (838)
Q Consensus 753 ~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 828 (838)
.+++++|+++|++++..|..|.||||+|++.|+.+++++|+++|++++.+|..|.| +++|+..|+ .++++.|.+.
T Consensus 163 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~-~~i~~~l~~~ 238 (241)
T 1k1a_A 163 LSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRV-IDILRGKATR 238 (241)
T ss_dssp HHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHH-HHHHTC----
T ss_pred HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCc-HHHHhhhccC
Confidence 99999999999999999999999999999999999999999999999999999999 999999888 5888776653
No 25
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=4.3e-37 Score=302.71 Aligned_cols=234 Identities=27% Similarity=0.366 Sum_probs=218.2
Q ss_pred cccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccCCC-CChHHHH
Q psy3308 569 TATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKN-GYTPLHI 647 (838)
Q Consensus 569 ~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~-~~t~L~~ 647 (838)
+..+..+.++|+.|+..|+.+++++|++.|++++..+..|.|||++|+..|+.+++++|+++|++++..... |.|||+.
T Consensus 3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~ 82 (240)
T 3eu9_A 3 THIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHW 82 (240)
T ss_dssp CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHH
T ss_pred cccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHH
Confidence 445667889999999999999999999999999999999999999999999999999999999998866544 9999999
Q ss_pred HHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHhHHHHhcCC-HHHHHHH
Q psy3308 648 AAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDK-VNVATIT 726 (838)
Q Consensus 648 A~~~~~~~iv~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~-~~i~~~L 726 (838)
|+..|+.+++++|+++|++++..+..|.|||++|+..|+.+++++|+++|++++..+..|.||||.|+..++ .+++++|
T Consensus 83 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L 162 (240)
T 3eu9_A 83 ATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLL 162 (240)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999997766 7899999
Q ss_pred HhCCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCCC
Q psy3308 727 MFNGAEIDPVTK-AGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNAT 802 (838)
Q Consensus 727 ~~~~~~~~~~~~-~g~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ga~~~~~ 802 (838)
++.|++++..+. .|.||||+|+..|+.+++++|+++|++++..|..|.|||++|++.|+.+++++|+++|++....
T Consensus 163 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~ 239 (240)
T 3eu9_A 163 LTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYD 239 (240)
T ss_dssp HHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC------
T ss_pred HhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhccCcC
Confidence 999999999987 8999999999999999999999999999999999999999999999999999999999877644
No 26
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=1.1e-37 Score=315.08 Aligned_cols=249 Identities=22% Similarity=0.262 Sum_probs=201.6
Q ss_pred cccCCCCCcHHHHHHHcCcHHHHHHHHhCCCC---CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHH
Q psy3308 569 TATTKKGFTPLHLAAKYGRMKIAQMLLQKDAP---VDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPL 645 (838)
Q Consensus 569 ~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~---~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L 645 (838)
+..+..|.||||.|+..|+.++|++|++.|++ ++.++..|.||||+|+..|+.+++++|+++|++++..+..|.|||
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL 82 (282)
T 1oy3_D 3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTAL 82 (282)
T ss_dssp CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence 56788999999999999999999999999888 788999999999999999999999999999999999999999999
Q ss_pred HHHHHcCcHHHHHHHHhCCCCCCCC-------------CCCCCcHHHHHHHcCc-HHHHHHHHhCCCCCCCCCCCCCcHh
Q psy3308 646 HIAAKKNQMDIATTLLEYNAKPNAE-------------SKAGFTPLHLSAQEGH-TDMSSLLIEHGATVSHQAKNGLTPL 711 (838)
Q Consensus 646 ~~A~~~~~~~iv~~Ll~~~~~~~~~-------------~~~g~t~L~~A~~~g~-~~iv~~Ll~~g~~~~~~~~~~~t~l 711 (838)
|+|+..|+.+++++|+++|++.... ...+.++++.+...+. ......+...+.+++..+..|.|||
T Consensus 83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L 162 (282)
T 1oy3_D 83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL 162 (282)
T ss_dssp HHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHH
T ss_pred HHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHH
Confidence 9999999999999999988764322 1234556666555543 3444556666888999999999999
Q ss_pred HHHHhcCCHHHHHHHHhCCCCCCCCCCC-CCcHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHhCcHHHHH
Q psy3308 712 HLCAQEDKVNVATITMFNGAEIDPVTKA-GFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIID 790 (838)
Q Consensus 712 ~~A~~~g~~~i~~~L~~~~~~~~~~~~~-g~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~ 790 (838)
|+|+..|+.+++++|+++|++++.++.. |+||||+|+..|+.++|++|+++|++++.+|..|+||||+|++.|+.++++
T Consensus 163 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~ 242 (282)
T 1oy3_D 163 HVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILAR 242 (282)
T ss_dssp HHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHH
Confidence 9999999999999999999999998854 999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCCCCCccch-HHHHHHcCC
Q psy3308 791 LLLGAGAQPNATTNLFCC-ATILVKNGA 817 (838)
Q Consensus 791 ~Ll~~ga~~~~~~~~~~~-~~~~~~~~~ 817 (838)
+|+++|++++.+|..|.| ++++.....
T Consensus 243 ~Ll~~ga~~~~~~~~g~tpl~~a~~~~~ 270 (282)
T 1oy3_D 243 LLRAHGAPEPEDGGDKLSPCSSSGSDSD 270 (282)
T ss_dssp HHHHTTCCCCCCC---------------
T ss_pred HHHHcCCCcCcCCCcccccccccCCccc
Confidence 999999999999999999 998877554
No 27
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=4.2e-37 Score=298.38 Aligned_cols=216 Identities=26% Similarity=0.320 Sum_probs=206.3
Q ss_pred CcHHHHHHHHhCCCCCCCC-CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHcCcHHHHHHHHhCC
Q psy3308 586 GRMKIAQMLLQKDAPVDSQ-GKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYN 664 (838)
Q Consensus 586 ~~~~~v~~Ll~~~~~~~~~-~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~ 664 (838)
|+.+++++|+++|++++.. +..|.|||++|+..|+.+++++|+++|++++..+..|.||||.|+..|+.+++++|++.+
T Consensus 2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~ 81 (223)
T 2f8y_A 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 81 (223)
T ss_dssp ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBT
T ss_pred CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 5788899999999999875 789999999999999999999999999999999999999999999999999999999998
Q ss_pred C-CCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHhHHHHhcCCHHHHHHHHhCCCCCCCCCCCCCcH
Q psy3308 665 A-KPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTP 743 (838)
Q Consensus 665 ~-~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~i~~~L~~~~~~~~~~~~~g~t~ 743 (838)
. +++..+..|.|||++|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||
T Consensus 82 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 161 (223)
T 2f8y_A 82 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP 161 (223)
T ss_dssp TSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred CCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCH
Confidence 7 889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCC
Q psy3308 744 LHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNA 801 (838)
Q Consensus 744 l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ga~~~~ 801 (838)
||+|+..|+.+++++|+++|++++..|..|.|||++|++.++.+++++|+++|+....
T Consensus 162 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~~ 219 (223)
T 2f8y_A 162 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSP 219 (223)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSCC
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCccc
Confidence 9999999999999999999999999999999999999999999999999999997654
No 28
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=1e-37 Score=308.49 Aligned_cols=214 Identities=26% Similarity=0.322 Sum_probs=177.8
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHhCCCC--------CCccCCCCChHHHHHHHcCcH-HHHHHHHhCCCCCCCCCCCC
Q psy3308 604 QGKNGVTPLHVASHYDHQNVALLLLDRGAS--------PHAVAKNGYTPLHIAAKKNQM-DIATTLLEYNAKPNAESKAG 674 (838)
Q Consensus 604 ~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~--------~~~~~~~~~t~L~~A~~~~~~-~iv~~Ll~~~~~~~~~~~~g 674 (838)
+|..+.+||+.|+..|+.++|++|++.|++ ++..+..+.|||+.|+..+.. .++++|++.|++++.+|..|
T Consensus 7 kd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G 86 (269)
T 4b93_B 7 KDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDG 86 (269)
T ss_dssp CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTTS
T ss_pred cCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCC
Confidence 455667899999999999999999999875 345567789999999988775 58899999999999999999
Q ss_pred CcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHhHHHHhcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHH
Q psy3308 675 FTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLN 754 (838)
Q Consensus 675 ~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~i~~~L~~~~~~~~~~~~~g~t~l~~A~~~g~~~ 754 (838)
+||||+|+..|+.++|++|++.|++++..+..|.||++.|+..++.+++++|++.|++++.+|..|+||||+|+..|+.+
T Consensus 87 ~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~ 166 (269)
T 4b93_B 87 SSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHE 166 (269)
T ss_dssp CCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGG
T ss_pred CCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCccCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCCCCCccch-HHHHHHcCC
Q psy3308 755 MVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNLFCC-ATILVKNGA 817 (838)
Q Consensus 755 ~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~-~~~~~~~~~ 817 (838)
+|++|+++|+++|..+..|+||||+|++.|+.++|++|+++|+|++.+|..|.| +++|++++.
T Consensus 167 ~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~ 230 (269)
T 4b93_B 167 LVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSK 230 (269)
T ss_dssp GHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCH
T ss_pred HHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCc
Confidence 999999999999999999999999999999999999999999999999999999 999988775
No 29
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1.8e-37 Score=311.21 Aligned_cols=226 Identities=14% Similarity=0.164 Sum_probs=211.7
Q ss_pred ccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHH
Q psy3308 568 ITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHI 647 (838)
Q Consensus 568 ~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~ 647 (838)
++..+..|.||||.|+..|+.+++++|+++|++++.. +|.||||+|+..|+.+++++|+++|++++..+..|.||||+
T Consensus 24 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~ 101 (285)
T 3kea_A 24 TFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYY 101 (285)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC--TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHH
Confidence 5677889999999999999999999999999999887 48999999999999999999999999999999999999999
Q ss_pred HHHcCcHHHHHHHHhCCCCCCCCCCCC-CcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHhHHHHhcCCHHHHHHH
Q psy3308 648 AAKKNQMDIATTLLEYNAKPNAESKAG-FTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATIT 726 (838)
Q Consensus 648 A~~~~~~~iv~~Ll~~~~~~~~~~~~g-~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~i~~~L 726 (838)
|+..|+.+++++|+++|++++..+..| .|||++|+..|+.+++++|+++|++.... ..|.||||+|+..|+.+++++|
T Consensus 102 A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~L 180 (285)
T 3kea_A 102 AVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILL 180 (285)
T ss_dssp HHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHHHH
Confidence 999999999999999999999999999 79999999999999999999999877332 2899999999999999999999
Q ss_pred HhCCCCCCCCCCCCCcH-HHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCCCC
Q psy3308 727 MFNGAEIDPVTKAGFTP-LHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATT 803 (838)
Q Consensus 727 ~~~~~~~~~~~~~g~t~-l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ga~~~~~~ 803 (838)
+++|++++.++..|+|| ||+|+..|+.+++++|+++|++++..|. .|+..|+.++|++|+++|++++..+
T Consensus 181 l~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~-------~a~~~~~~~iv~~Ll~~g~~~~~~~ 251 (285)
T 3kea_A 181 LDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL-------ENVLLDDAEIAKMIIEKHVEYKSDS 251 (285)
T ss_dssp HHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG-------GGGTTTCHHHHHHHHHHHHHHTTCT
T ss_pred HHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh-------hhhhcCCHHHHHHHHHcCCCCCCcc
Confidence 99999999999999998 9999999999999999999999999873 6788999999999999999887654
No 30
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=3e-36 Score=293.58 Aligned_cols=218 Identities=25% Similarity=0.351 Sum_probs=174.1
Q ss_pred CCcHHHHHHHcCcHHHHHHHHhCCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHhCC--CCCCc-cCCCCChHHHHHHH
Q psy3308 575 GFTPLHLAAKYGRMKIAQMLLQKDAPVDS-QGKNGVTPLHVASHYDHQNVALLLLDRG--ASPHA-VAKNGYTPLHIAAK 650 (838)
Q Consensus 575 ~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~-~~~~~~~~l~~A~~~~~~~~v~~Ll~~g--~~~~~-~~~~~~t~L~~A~~ 650 (838)
|.||||.|+..|+.+++++|++.+.++.. .+..|.||||+|+..|+.+++++|+++| .+++. .+..|.||||.|+.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~ 81 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 46788888888888888888888766543 6778888888888888888888888888 44444 56778888888888
Q ss_pred cCcHHHHHHHHhCC--CCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHhHHHHhcCCHHHHHHHHh
Q psy3308 651 KNQMDIATTLLEYN--AKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMF 728 (838)
Q Consensus 651 ~~~~~iv~~Ll~~~--~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~i~~~L~~ 728 (838)
.|+.+++++|+++| ++++..+..|.|||++|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|++
T Consensus 82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 161 (228)
T 2dzn_A 82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG 161 (228)
T ss_dssp HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 88888888888877 7777778888888888888888888888888888888888888888888888888888888888
Q ss_pred CC-CCCCCCCCCCCcHHHHHHHcCCHHHHHHHH-HCCCCCccCCCCCCcHHHHHHHhCcHHHHHHHHhC
Q psy3308 729 NG-AEIDPVTKAGFTPLHIASHFGQLNMVRYLV-ENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGA 795 (838)
Q Consensus 729 ~~-~~~~~~~~~g~t~l~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 795 (838)
+| ++++.+|..|+||||+|+..|+.+++++|+ ++|++++..|..|.|||++|++. +++++|+++
T Consensus 162 ~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~---~~~~~l~~~ 227 (228)
T 2dzn_A 162 LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLNN 227 (228)
T ss_dssp TTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST---THHHHHHTT
T ss_pred cCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH---HHHHHHHhc
Confidence 88 788888888888888888888888888888 77888888888888888888654 566666653
No 31
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=4.4e-36 Score=292.92 Aligned_cols=227 Identities=32% Similarity=0.403 Sum_probs=213.5
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhCCCCCCCchhHHHHHhhcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCC
Q psy3308 524 KGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDS 603 (838)
Q Consensus 524 ~~~~~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~ 603 (838)
.+.+||+.|+..|+.+++++|++.+.. ..+..+..|.|||+.|+..|+.+++++|++.|++++.
T Consensus 5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~----------------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~ 68 (231)
T 3aji_A 5 VSNIMICNLAYSGKLDELKERILADKS----------------LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 68 (231)
T ss_dssp CSSSHHHHHHHHTCHHHHHHHHHHCGG----------------GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCC
T ss_pred cccchHHHHHHhCCHHHHHHHHHhchh----------------hhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCC
Confidence 456788888889999988888875432 2355677899999999999999999999999999999
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHH
Q psy3308 604 QGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQ 683 (838)
Q Consensus 604 ~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~g~t~L~~A~~ 683 (838)
.+..|.|||++|+..++.+++++|+++|++++..+..|.||||.|+..|+.+++++|+++|++++..+..|.|||++|+.
T Consensus 69 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~ 148 (231)
T 3aji_A 69 KDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAA 148 (231)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred cCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHhCCCCCCCCCCCCCcHhHHHHhcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCC
Q psy3308 684 EGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENG 763 (838)
Q Consensus 684 ~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~i~~~L~~~~~~~~~~~~~g~t~l~~A~~~g~~~~v~~Ll~~g 763 (838)
.|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|+|||++|+..++.+++++|.++|
T Consensus 149 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~ 228 (231)
T 3aji_A 149 KGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEE 228 (231)
T ss_dssp HTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCC
Q psy3308 764 ANV 766 (838)
Q Consensus 764 ~~~ 766 (838)
+++
T Consensus 229 a~i 231 (231)
T 3aji_A 229 ASM 231 (231)
T ss_dssp HCC
T ss_pred ccC
Confidence 763
No 32
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1.1e-36 Score=305.46 Aligned_cols=237 Identities=18% Similarity=0.241 Sum_probs=202.4
Q ss_pred cCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHcC
Q psy3308 72 TGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKG 151 (838)
Q Consensus 72 ~g~~~~v~~l~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~Aa~~g~~~iv~~L~~~~ 151 (838)
....+++++|.+. +++.+|..|+||||+|+..|+.++|++|+++|++++.. .|.||||+||..|+.++|++|+++|
T Consensus 10 ~~~~~v~~lL~~~--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~g 85 (285)
T 3kea_A 10 WKSKQLKSFLSSK--DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQAATLEDTKIVKILLFSG 85 (285)
T ss_dssp CCHHHHHHHHHST--TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC--TTCCHHHHHTTSSSCHHHHHHHHTT
T ss_pred cCHHHHHHHHHhC--CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 4556666666655 57899999999999999999999999999999988776 4899999999999999999999999
Q ss_pred CCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCccCCCCCC-ccHHHHHHhCCcHHHHHHHHhCCCCCCcccCCCccH
Q psy3308 152 ANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNG-LAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTA 230 (838)
Q Consensus 152 ~~~~~~~~~~~tal~~A~~~g~~~iv~~L~~~~~~~~~~~~~~-~~~l~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~ 230 (838)
++++..+..|.||||+|+..|+.++|++|++.|++++..+..| .|||++|+..|+.+++++|+++|.+.... ..+.||
T Consensus 86 a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~ 164 (285)
T 3kea_A 86 LDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSC 164 (285)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHH
T ss_pred CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccH
Confidence 9999999999999999999999999999999999999899988 79999999999999999999999876332 278899
Q ss_pred HHHHHhcCCHHHHHHHHHCCCCccccccCCCch-HHHHHhhCCccccccChHHHHHHHHhCCCCCCCCCCCCCcHHHHHH
Q psy3308 231 LHVASHCGHVRVAKTLLDRKADPNARALNGFTP-LHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIAC 309 (838)
Q Consensus 231 l~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~~~-l~~a~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~~~~l~~A~ 309 (838)
|++|+..|+.+++++|+++|++++..+..|.|| |++|+..+ +.+++++|+++|++++..+. .|+
T Consensus 165 L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~--------~~~~v~~Ll~~gad~~~~~~-------~a~ 229 (285)
T 3kea_A 165 IHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNK--------DIEMLQALFKYDINIYSANL-------ENV 229 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHT--------CHHHHHHHTTSCBCSTTTTG-------GGG
T ss_pred HHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcC--------CHHHHHHHHHcCCCCCCCCh-------hhh
Confidence 999999999999999999998888887777776 77777766 56677777777777766552 356
Q ss_pred HcCCHHHHHHHHhCCCCcc
Q psy3308 310 KKNRYKVVELLLKYGASIA 328 (838)
Q Consensus 310 ~~g~~~~v~~L~~~~~~~~ 328 (838)
..|+.+++++|+++|+++.
T Consensus 230 ~~~~~~iv~~Ll~~g~~~~ 248 (285)
T 3kea_A 230 LLDDAEIAKMIIEKHVEYK 248 (285)
T ss_dssp TTTCHHHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHcCCCCC
Confidence 6677777777777766554
No 33
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=4.2e-36 Score=303.52 Aligned_cols=250 Identities=25% Similarity=0.297 Sum_probs=164.2
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCchhHHHHHhhcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCC
Q psy3308 521 TTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAP 600 (838)
Q Consensus 521 ~~~~~~~~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~ 600 (838)
++..|.|||++|+..|+.+++++|++.+.... .++..+..|.||||+|+..|+.+++++|+++|++
T Consensus 5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~--------------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~ 70 (282)
T 1oy3_D 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHE--------------YLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG 70 (282)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSG--------------GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcc--------------cccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 44455555555555555555555554332210 1234455566666666666666666666666666
Q ss_pred CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcc-------------CCCCChHHHHHHHcCcH-HHHHHHHhCCCC
Q psy3308 601 VDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAV-------------AKNGYTPLHIAAKKNQM-DIATTLLEYNAK 666 (838)
Q Consensus 601 ~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~-------------~~~~~t~L~~A~~~~~~-~iv~~Ll~~~~~ 666 (838)
++.++..|.|||++|+..++.+++++|+++|++.... ...+.++++.++..+.. .....+...+.+
T Consensus 71 ~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (282)
T 1oy3_D 71 VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQ 150 (282)
T ss_dssp SSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGG
T ss_pred CCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhc
Confidence 6666666666666666666666666666665543221 12344566666555433 344555567888
Q ss_pred CCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCC-CCcHhHHHHhcCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Q psy3308 667 PNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKN-GLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLH 745 (838)
Q Consensus 667 ~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~-~~t~l~~A~~~g~~~i~~~L~~~~~~~~~~~~~g~t~l~ 745 (838)
++..+..|.||||+|+..|+.++|++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++.++..|+||||
T Consensus 151 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~ 230 (282)
T 1oy3_D 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLG 230 (282)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred CCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHH
Confidence 9999999999999999999999999999999999998854 999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHhC
Q psy3308 746 IASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQG 784 (838)
Q Consensus 746 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 784 (838)
+|+..|+.+++++|+++|++++.++..|.|||++|....
T Consensus 231 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~ 269 (282)
T 1oy3_D 231 SALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDS 269 (282)
T ss_dssp HHHTSSCHHHHHHHHHTTCCCCCCC--------------
T ss_pred HHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCcc
Confidence 999999999999999999999999999999999998654
No 34
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=1.4e-35 Score=288.89 Aligned_cols=208 Identities=25% Similarity=0.326 Sum_probs=197.0
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhCCCCCCc-cCCCCChHHHHHHHcCcHHHHHHHHhCC--CCCCC-CCCCCCcHHHHHHH
Q psy3308 608 GVTPLHVASHYDHQNVALLLLDRGASPHA-VAKNGYTPLHIAAKKNQMDIATTLLEYN--AKPNA-ESKAGFTPLHLSAQ 683 (838)
Q Consensus 608 ~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~~~t~L~~A~~~~~~~iv~~Ll~~~--~~~~~-~~~~g~t~L~~A~~ 683 (838)
|.|||+.|+..|+.+++++|++.+.+... .+..|.||||+|+..|+.+++++|++.| .+++. .+..|.|||++|+.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~ 81 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 67999999999999999999999887665 7889999999999999999999999999 55555 77899999999999
Q ss_pred cCcHHHHHHHHhCC--CCCCCCCCCCCcHhHHHHhcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy3308 684 EGHTDMSSLLIEHG--ATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVE 761 (838)
Q Consensus 684 ~g~~~iv~~Ll~~g--~~~~~~~~~~~t~l~~A~~~g~~~i~~~L~~~~~~~~~~~~~g~t~l~~A~~~g~~~~v~~Ll~ 761 (838)
.|+.+++++|+++| ++++..+..|.||||.|+..|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|++
T Consensus 82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 161 (228)
T 2dzn_A 82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG 161 (228)
T ss_dssp HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 99999999999998 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCCccCCCCCCcHHHHHHHhCcHHHHHHHH-hCCCCCCCCCCccch-HHHHHHc
Q psy3308 762 NG-ANVNATTNLGYTPLHQASQQGRVLIIDLLL-GAGAQPNATTNLFCC-ATILVKN 815 (838)
Q Consensus 762 ~g-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll-~~ga~~~~~~~~~~~-~~~~~~~ 815 (838)
+| ++++..|..|+||||+|++.|+.+++++|+ ++|++++.+|..|.| +++|.+.
T Consensus 162 ~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~ 218 (228)
T 2dzn_A 162 LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE 218 (228)
T ss_dssp TTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST
T ss_pred cCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH
Confidence 99 999999999999999999999999999999 889999999999999 9998654
No 35
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=1.9e-35 Score=301.23 Aligned_cols=236 Identities=22% Similarity=0.270 Sum_probs=206.2
Q ss_pred CCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHc
Q psy3308 572 TKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKK 651 (838)
Q Consensus 572 ~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~ 651 (838)
+..+.|||+.|+..|+.++|++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus 37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~ 116 (299)
T 1s70_B 37 KFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC 116 (299)
T ss_dssp EECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred ccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Confidence 34667999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhC-CCCCCCCCCCCCcHhHHHHhcCCHHHHHHHHhCC
Q psy3308 652 NQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEH-GATVSHQAKNGLTPLHLCAQEDKVNVATITMFNG 730 (838)
Q Consensus 652 ~~~~iv~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~-g~~~~~~~~~~~t~l~~A~~~g~~~i~~~L~~~~ 730 (838)
|+.+++++|+++|++++..+..|.|||++|+..++.+++++|+.. |.+++.....+.+++.. .+..++....
T Consensus 117 g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~ 189 (299)
T 1s70_B 117 GYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLR-------DARQWLNSGH 189 (299)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH-------HHHHHHHHTC
T ss_pred CCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHH-------HHHHHHhccC
Confidence 999999999999999999999999999999999999999988764 55554433333333322 2333444444
Q ss_pred CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCCCCCccch-H
Q psy3308 731 AEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNLFCC-A 809 (838)
Q Consensus 731 ~~~~~~~~~g~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~-~ 809 (838)
......+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|++.|+.++|++|+++|++++.+|..|+| +
T Consensus 190 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l 269 (299)
T 1s70_B 190 INDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAF 269 (299)
T ss_dssp CCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTT
T ss_pred cchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence 444556778999999999999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred HHHHH
Q psy3308 810 TILVK 814 (838)
Q Consensus 810 ~~~~~ 814 (838)
++|.+
T Consensus 270 ~~A~~ 274 (299)
T 1s70_B 270 DVADE 274 (299)
T ss_dssp TSCCS
T ss_pred HHHHH
Confidence 88854
No 36
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.9e-34 Score=283.82 Aligned_cols=231 Identities=27% Similarity=0.254 Sum_probs=149.9
Q ss_pred ccCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccC-CCCcHHHH
Q psy3308 89 NVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTR-DGLTPLHC 167 (838)
Q Consensus 89 ~~~~~~~~t~l~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~Aa~~g~~~iv~~L~~~~~~~~~~~~-~~~tal~~ 167 (838)
+..|..+.++|+.|+..|+++++++|+++|.+++..+..|.|||++|+..|+.++|++|+++|.+++.... .|.|||++
T Consensus 3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~ 82 (240)
T 3eu9_A 3 THIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHW 82 (240)
T ss_dssp CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHH
T ss_pred cccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHH
Confidence 34456667777777777777777777777777777777777777777777777777777777776654433 36777777
Q ss_pred HHHcCCHHHHHHHHHcCCCccCCCCCCccHHHHHHhCCcHHHHHHHHhCCCCCCcccCCCccHHHHHHhcCC-HHHHHHH
Q psy3308 168 AARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGH-VRVAKTL 246 (838)
Q Consensus 168 A~~~g~~~iv~~L~~~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~A~~~g~-~~iv~~L 246 (838)
|+..|+.+++++|++.|++++..+..|.+||++|+..|+.+++++|+++|++++..+..+.|||++|+..++ .++
T Consensus 83 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~---- 158 (240)
T 3eu9_A 83 ATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDP---- 158 (240)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTT----
T ss_pred HHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHH----
Confidence 777777777777777766666555555566666655555555555555555555555555555555554333 444
Q ss_pred HHCCCCccccccCCCchHHHHHhhCCccccccChHHHHHHHHhCCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy3308 247 LDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARAL-NGFTPLHIACKKNRYKVVELLLKYGA 325 (838)
Q Consensus 247 ~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~-~~~~~l~~A~~~g~~~~v~~L~~~~~ 325 (838)
+++|++.|++++..+. .|.||||.|+..|+.+++++|+++|+
T Consensus 159 -------------------------------------~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 201 (240)
T 3eu9_A 159 -------------------------------------TRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGA 201 (240)
T ss_dssp -------------------------------------HHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTC
T ss_pred -------------------------------------HHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence 4555555555554454 56677777777777777777777777
Q ss_pred CccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy3308 326 SIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAP 360 (838)
Q Consensus 326 ~~~~~~~~~~~~l~~A~~~g~~~iv~~Ll~~~~~~ 360 (838)
+++..+..|.|||++|+..|+.+++++|++.+...
T Consensus 202 ~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~ 236 (240)
T 3eu9_A 202 NVDAQNIKGESALDLAKQRKNVWMINHLQEARQAK 236 (240)
T ss_dssp CTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC---
T ss_pred CCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhcc
Confidence 77766777777777777777777777777665543
No 37
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=6.5e-35 Score=282.91 Aligned_cols=216 Identities=26% Similarity=0.304 Sum_probs=202.9
Q ss_pred cCcHHHHHHHHHCCCCcccC-CCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHc
Q psy3308 72 TGQEEVAKILVDNGATINVQ-SLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISK 150 (838)
Q Consensus 72 ~g~~~~v~~l~~~~~~~~~~-~~~~~t~l~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~Aa~~g~~~iv~~L~~~ 150 (838)
.|+.+++++|+++|.+++.. |..|+||||+|+..|+.++|++|+++|++++..+..|.|||++|+..|+.++|++|+++
T Consensus 1 gg~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 80 (223)
T 2f8y_A 1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN 80 (223)
T ss_dssp ----CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHB
T ss_pred CCcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 36788899999999998875 88999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCccHHHHHHhCCcHHHHHHHHhCCCCCCcccCCCcc
Q psy3308 151 GA-NIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLT 229 (838)
Q Consensus 151 ~~-~~~~~~~~~~tal~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~ 229 (838)
+. +++..+..|.|||++|+..|+.+++++|++.|++++..+..|.|||++|+..|+.+++++|+++|++++..+..+.|
T Consensus 81 ~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t 160 (223)
T 2f8y_A 81 RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREET 160 (223)
T ss_dssp TTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred CCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcC
Confidence 87 78888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHCCCCccccccCCCchHHHHHhhCCccccccChHHHHHHHHhCCCCCC
Q psy3308 230 ALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPN 295 (838)
Q Consensus 230 ~l~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~i~~~Ll~~~~~~~ 295 (838)
||++|+..|+.+++++|+++|++++..+..+.||+++|+..+ +.+++++|+++|+...
T Consensus 161 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~--------~~~i~~~L~~~g~~~~ 218 (223)
T 2f8y_A 161 PLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERM--------HHDIVRLLDEYNLVRS 218 (223)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT--------CHHHHHHHHHTTCSSC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhc--------chHHHHHHHHcCCCcc
Confidence 999999999999999999999999999999999999999987 7789999999988654
No 38
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=3.9e-34 Score=259.36 Aligned_cols=159 Identities=34% Similarity=0.516 Sum_probs=149.3
Q ss_pred hHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHhHHHHhcCCHHH
Q psy3308 643 TPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNV 722 (838)
Q Consensus 643 t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~i 722 (838)
++|+.|++.|+.++|++|+++|++++.+|..|+|||++|+..++.+++++|+++|++++.++..|.||||+|+..|+.++
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~ 85 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEV 85 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCC
Q psy3308 723 ATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNA 801 (838)
Q Consensus 723 ~~~L~~~~~~~~~~~~~g~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ga~~~~ 801 (838)
+++|+++|+++|.+|..|+||||+|+..|+.++|++|+++|++++.+|..|+|||++|++.|+.+++++|+++||+++.
T Consensus 86 v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie~ 164 (169)
T 4gpm_A 86 VKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLEH 164 (169)
T ss_dssp HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC------
T ss_pred HHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998864
No 39
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=1.6e-34 Score=294.35 Aligned_cols=272 Identities=23% Similarity=0.280 Sum_probs=184.4
Q ss_pred hhhcCcHHHHHHHHHCCCCcccC---------CCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCccccCCCcHHHHHHHcC
Q psy3308 69 FEATGQEEVAKILVDNGATINVQ---------SLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWG 139 (838)
Q Consensus 69 ~~~~g~~~~v~~l~~~~~~~~~~---------~~~~~t~l~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~Aa~~g 139 (838)
+++.|+.+.++.++....++... +..+.|||+.||..|++++|++|+++|++++..+..|.||||+||..|
T Consensus 5 ~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g 84 (299)
T 1s70_B 5 DAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDD 84 (299)
T ss_dssp HHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcC
Confidence 45666777777776665443321 223457777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHcCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCccHHHHHHhCCcHHHHHHHHhCCCC
Q psy3308 140 KVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAG 219 (838)
Q Consensus 140 ~~~iv~~L~~~~~~~~~~~~~~~tal~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~L~~~~~~ 219 (838)
+.++|++|+++|++++..+..|.||||+|+..|+.++|++|+++|++++..+..|.|||++|+..|+.+++++++...
T Consensus 85 ~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~-- 162 (299)
T 1s70_B 85 NVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQ-- 162 (299)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHH--
T ss_pred CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhc--
Confidence 777777777777777777777777777777777777777777777777666666777777777666666666665431
Q ss_pred CCcccCCCccHHHHHHhcCCHHHHHHHHHCCCCccccccCCCchHHHHHhhCCccccccChHHHHHHHHhCCCCCCCCCC
Q psy3308 220 VDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARAL 299 (838)
Q Consensus 220 ~~~~~~~~~~~l~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~ 299 (838)
+.+++.....+.+++ ...+..++..........+.
T Consensus 163 ------------------------------~~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~ 197 (299)
T 1s70_B 163 ------------------------------GVDIEAARKEEERIM---------------LRDARQWLNSGHINDVRHAK 197 (299)
T ss_dssp ------------------------------TCCHHHHHHHHHHHH---------------HHHHHHHHHHTCCCCCCCTT
T ss_pred ------------------------------CCCchhhhhhhhhHH---------------HHHHHHHHhccCcchhhhcC
Confidence 111111100000000 01122333333333444566
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCc
Q psy3308 300 NGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQ 379 (838)
Q Consensus 300 ~~~~~l~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~l~~A~~~g~ 379 (838)
.|.||||.|+..|+.+++++|+++|++++..+..|.|||++|+..|+.+++++|+++|++++..+..|.||+++|++. .
T Consensus 198 ~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~-~ 276 (299)
T 1s70_B 198 SGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADED-I 276 (299)
T ss_dssp TCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSG-G
T ss_pred CCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHH-H
Confidence 788888888888888888888888888888888888888888888888888888888888888888888888888654 3
Q ss_pred HHHHHHHHH
Q psy3308 380 TDIVRILLR 388 (838)
Q Consensus 380 ~~iv~~Ll~ 388 (838)
.+.++.+++
T Consensus 277 ~~~l~~l~~ 285 (299)
T 1s70_B 277 LGYLEELQK 285 (299)
T ss_dssp GHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444444
No 40
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=2.1e-36 Score=309.96 Aligned_cols=268 Identities=14% Similarity=0.104 Sum_probs=164.1
Q ss_pred cCCHHHHHHHHhCCCCCCCCCCCCChHHHHHHHhCcHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy3308 469 LGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKD 548 (838)
Q Consensus 469 ~~~~~~v~~L~~~~~~~~~~~~~~~~~l~~A~~~~~~e~v~~L~~~~~~~~~~~~~~~~~l~~A~~~g~~~~~~~Ll~~~ 548 (838)
....+++++|+++|++++..+..|.++++ |+.+++++|+++|++++. +++..|+...... ..
T Consensus 29 ~~~~dlv~~ll~~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~------~~~~~a~~~~~~~-----~~-- 90 (327)
T 1sw6_A 29 TFTHDLTSDFLSSPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEI------QEMPTSLNNDSSN-----RN-- 90 (327)
T ss_dssp ECCTTCCCSTTTSSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------------------------
T ss_pred hhcCchHHHHhhCCcccccCCCCCCcccC-----chhHHHHHHHHhccCCcc------ccchHhhhccccc-----cc--
Confidence 45567788888888888888888888765 788888888888776432 2444443221000 00
Q ss_pred CCCCCchhHHHHHhhcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHH
Q psy3308 549 APVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDS-QGKNGVTPLHVASHYDHQNVALLL 627 (838)
Q Consensus 549 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~-~~~~~~~~l~~A~~~~~~~~v~~L 627 (838)
........+..+.++..+..+++++|++.|+++|. ++..|.||||+|+..|+.+++++|
T Consensus 91 --------------------~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~L 150 (327)
T 1sw6_A 91 --------------------SEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHL 150 (327)
T ss_dssp ---------------------------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHH
T ss_pred --------------------ccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHH
Confidence 00011122345777777778888888888888888 788888888888888888888888
Q ss_pred HhCCCCCCccCCCCChHHHHHHHcCc---HHHHHHHHhCC-CCCCCCCCCCCcHHHHHHH----cCcHHHHHHHHhC---
Q psy3308 628 LDRGASPHAVAKNGYTPLHIAAKKNQ---MDIATTLLEYN-AKPNAESKAGFTPLHLSAQ----EGHTDMSSLLIEH--- 696 (838)
Q Consensus 628 l~~g~~~~~~~~~~~t~L~~A~~~~~---~~iv~~Ll~~~-~~~~~~~~~g~t~L~~A~~----~g~~~iv~~Ll~~--- 696 (838)
+++|++++..+..|+||||+|+..|+ .++++.|++++ .+++.++..|+||||+|+. .|+.+++++|++.
T Consensus 151 l~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~ 230 (327)
T 1sw6_A 151 VKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMG 230 (327)
T ss_dssp HHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHH
Confidence 88888888888888888888888887 67777777765 6678888888888888888 7888888888876
Q ss_pred -----------------CCCCCCCCCCCCcHhHHHHhcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q psy3308 697 -----------------GATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYL 759 (838)
Q Consensus 697 -----------------g~~~~~~~~~~~t~l~~A~~~g~~~i~~~L~~~~~~~~~~~~~g~t~l~~A~~~g~~~~v~~L 759 (838)
|++++..+..|.||||.|+. +++|+++ +++.+|..|+||||+|+..|+.++|++|
T Consensus 231 ~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~L 302 (327)
T 1sw6_A 231 WIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDAL 302 (327)
T ss_dssp HHHHGGGCCEEEC----------------CHHHHHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHH
T ss_pred HHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 44444444444444444443 4444443 2444444444444444444444444444
Q ss_pred HHCCCCCccCCCCCCcHHHHHHH
Q psy3308 760 VENGANVNATTNLGYTPLHQASQ 782 (838)
Q Consensus 760 l~~g~~~~~~~~~g~t~l~~A~~ 782 (838)
+++|++++.+|..|+||||+|++
T Consensus 303 l~~Gad~~~~d~~G~TpL~~A~~ 325 (327)
T 1sw6_A 303 LDYGADPFIANKSGLRPVDFGAG 325 (327)
T ss_dssp HHTTCCTTCCCTTSCCGGGGTCC
T ss_pred HHcCCCCcccCCCCCCHHHHHHh
Confidence 44444444444444444444443
No 41
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=8.4e-36 Score=305.46 Aligned_cols=243 Identities=16% Similarity=0.093 Sum_probs=198.8
Q ss_pred HhhcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCC-----------------CCCCcHHHHHHHcCCHHH
Q psy3308 561 LTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQG-----------------KNGVTPLHVASHYDHQNV 623 (838)
Q Consensus 561 l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~-----------------~~~~~~l~~A~~~~~~~~ 623 (838)
+++.|.+++..+..|.++++ |+.++|++|+++|++++... ....+..+.|+..+..++
T Consensus 38 ll~~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 112 (327)
T 1sw6_A 38 FLSSPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEV 112 (327)
T ss_dssp TTTSSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------------------------CHHHHHHHH
T ss_pred HhhCCcccccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHH
Confidence 33455667778888999876 99999999999998865411 111223467777788899
Q ss_pred HHHHHhCCCCCCc-cCCCCChHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCc---HHHHHHHHhCC-C
Q psy3308 624 ALLLLDRGASPHA-VAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGH---TDMSSLLIEHG-A 698 (838)
Q Consensus 624 v~~Ll~~g~~~~~-~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~---~~iv~~Ll~~g-~ 698 (838)
+++|++.|++++. .+..|.||||+|+..|+.++|++|+++|++++.++..|+||||+|+..|+ .++++.|++.+ +
T Consensus 113 ~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~ 192 (327)
T 1sw6_A 113 NDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP 192 (327)
T ss_dssp HHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG
T ss_pred HHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhc
Confidence 9999999999999 89999999999999999999999999999999999999999999999998 67888888776 6
Q ss_pred CCCCCCCCCCcHhHHHHh----cCCHHHHHHHHhC--------------------CCCCCCCCCCCCcHHHHHHHcCCHH
Q psy3308 699 TVSHQAKNGLTPLHLCAQ----EDKVNVATITMFN--------------------GAEIDPVTKAGFTPLHIASHFGQLN 754 (838)
Q Consensus 699 ~~~~~~~~~~t~l~~A~~----~g~~~i~~~L~~~--------------------~~~~~~~~~~g~t~l~~A~~~g~~~ 754 (838)
+++.++..|.||||+|+. .|+.+++++|++. |++++.++..|+||||+|+.
T Consensus 193 ~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~----- 267 (327)
T 1sw6_A 193 CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD----- 267 (327)
T ss_dssp GGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS-----
T ss_pred cccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH-----
Confidence 789999999999999999 8999999999987 89999999999999999986
Q ss_pred HHHHHHHCCCCCccCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCCCCCccch-HHHHHHcC
Q psy3308 755 MVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNLFCC-ATILVKNG 816 (838)
Q Consensus 755 ~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~-~~~~~~~~ 816 (838)
+++|+++ ++|.+|..|+||||+|++.|+.++|++|+++|+|++.+|..|.| +++|+++|
T Consensus 268 -~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 268 -LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp -HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred -HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence 9999998 68899999999999999999999999999999999999999999 99998764
No 42
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=2.6e-35 Score=288.10 Aligned_cols=212 Identities=24% Similarity=0.277 Sum_probs=173.3
Q ss_pred CCCCCCCcHHHHHHHcCCHHHHHHHHhCCC----CCCccCCCCChHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHH
Q psy3308 603 SQGKNGVTPLHVASHYDHQNVALLLLDRGA----SPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPL 678 (838)
Q Consensus 603 ~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~----~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~g~t~L 678 (838)
.+|..|.||||+|+..|+.+++++|++.+. +++..+..|.||||+|+..|+.+++++|+++|++++.++..|.|||
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L 82 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPL 82 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHH
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence 356677777888877777777777776654 5777777788888888888888888888888888888888888888
Q ss_pred HHHHHcCcHHHHHHHHhCCCC------CCCCCCCCCcHhHHHHhcCCHHHHHHHHhCCCCCCCCCC-CCCcHHHHHHHcC
Q psy3308 679 HLSAQEGHTDMSSLLIEHGAT------VSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTK-AGFTPLHIASHFG 751 (838)
Q Consensus 679 ~~A~~~g~~~iv~~Ll~~g~~------~~~~~~~~~t~l~~A~~~g~~~i~~~L~~~~~~~~~~~~-~g~t~l~~A~~~g 751 (838)
++|+..|+.+++++|+++|++ ++..+..|.||||+|+..|+.+++++|+++|++++.++. .|+||||+|+..|
T Consensus 83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~ 162 (236)
T 1ikn_D 83 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQ 162 (236)
T ss_dssp HHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcC
Confidence 888888888888888888765 456777899999999999999999999999999998887 8999999999999
Q ss_pred CHHHHHHHHHCCCCCccCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCC--CCCCccch-HHHHHH
Q psy3308 752 QLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN--ATTNLFCC-ATILVK 814 (838)
Q Consensus 752 ~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~~~~-~~~~~~ 814 (838)
+.+++++|+++|++++..|..|.|||++|+..|+.+++++|+++|+++. .++..+.| .+....
T Consensus 163 ~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~ 228 (236)
T 1ikn_D 163 NPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESE 228 (236)
T ss_dssp CHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC--
T ss_pred CHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhcc
Confidence 9999999999999999999999999999999999999999999999876 77888877 555443
No 43
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=5.6e-34 Score=278.08 Aligned_cols=196 Identities=24% Similarity=0.314 Sum_probs=137.4
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhC-CCCCCccCCCCChHHHHHHHcCcHHHHHHHHhCCCCC-----CCCCCCCCcHHHHH
Q psy3308 608 GVTPLHVASHYDHQNVALLLLDR-GASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKP-----NAESKAGFTPLHLS 681 (838)
Q Consensus 608 ~~~~l~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~-----~~~~~~g~t~L~~A 681 (838)
|.||||.|+..|+.+++++|++. |++++..+..|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|
T Consensus 3 g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A 82 (232)
T 2rfa_A 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIA 82 (232)
T ss_dssp TTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHH
Confidence 34445555554555555444444 4444444444555555555555555555555544443 33444455555555
Q ss_pred HHcCcHHHHHHHHhCCCCCCCC-------------CCCCCcHhHHHHhcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHH
Q psy3308 682 AQEGHTDMSSLLIEHGATVSHQ-------------AKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIAS 748 (838)
Q Consensus 682 ~~~g~~~iv~~Ll~~g~~~~~~-------------~~~~~t~l~~A~~~g~~~i~~~L~~~~~~~~~~~~~g~t~l~~A~ 748 (838)
+..|+.+++++|+++|++++.. +..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus 83 ~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~ 162 (232)
T 2rfa_A 83 VINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILI 162 (232)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence 5555555555555555555444 447999999999999999999999999999999999999999999
Q ss_pred HcCCHHHH----HHHHHCCCCC------ccCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCCCC
Q psy3308 749 HFGQLNMV----RYLVENGANV------NATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATT 803 (838)
Q Consensus 749 ~~g~~~~v----~~Ll~~g~~~------~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ga~~~~~~ 803 (838)
..|+.+++ ++|+++|+++ +..|..|+|||++|++.|+.++|++|+++|+++..+.
T Consensus 163 ~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~~~~~~ 227 (232)
T 2rfa_A 163 LQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAAH 227 (232)
T ss_dssp TCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred HcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCccchhhh
Confidence 99999888 9999999988 5889999999999999999999999999988776554
No 44
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=8.9e-33 Score=262.91 Aligned_cols=191 Identities=23% Similarity=0.345 Sum_probs=173.9
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhCCC-CCCccCCCCChHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHc
Q psy3308 606 KNGVTPLHVASHYDHQNVALLLLDRGA-SPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQE 684 (838)
Q Consensus 606 ~~~~~~l~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~g~t~L~~A~~~ 684 (838)
..+.+||+.|+..|+.+.++.|++.+. +++..+..|.||||.|+..|+.+++++|+++|++++..+..|.|||++|+..
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 82 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ 82 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence 356788999999999988888888865 8888888899999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHH-hCCCCCCCCCCCCCcHhHHHHhcCCHHHHHHHHhCC-CCCCCCCCCCCcHHHHHHHcCC-----HHHHH
Q psy3308 685 GHTDMSSLLI-EHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNG-AEIDPVTKAGFTPLHIASHFGQ-----LNMVR 757 (838)
Q Consensus 685 g~~~iv~~Ll-~~g~~~~~~~~~~~t~l~~A~~~g~~~i~~~L~~~~-~~~~~~~~~g~t~l~~A~~~g~-----~~~v~ 757 (838)
|+.+++++|+ ..+++++..+..|.||||+|+..|+.+++++|+++| ++++.++..|+||||+|+..++ .++++
T Consensus 83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~ 162 (201)
T 3hra_A 83 GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK 162 (201)
T ss_dssp TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHH
T ss_pred CCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHH
Confidence 9999999999 567788888999999999999999999999999998 8999999999999999999988 99999
Q ss_pred HHHHCCCCCccCCCCCCcHHHHHHHhCcHHHHHHHHhCC
Q psy3308 758 YLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAG 796 (838)
Q Consensus 758 ~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g 796 (838)
+|+++|++++..|..|.|||++|++.|+.+++++|+++|
T Consensus 163 ~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 163 LLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp HHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred HHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 999999999999999999999999999999999999987
No 45
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=1.8e-34 Score=282.05 Aligned_cols=215 Identities=24% Similarity=0.292 Sum_probs=194.8
Q ss_pred ccCCCCCcHHHHHHHcCcHHHHHHHHhCCC----CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHH
Q psy3308 570 ATTKKGFTPLHLAAKYGRMKIAQMLLQKDA----PVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPL 645 (838)
Q Consensus 570 ~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~----~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L 645 (838)
..+..|.||||.|+..|+.+++++|++.+. +++..+..|.||||+|+..|+.+++++|+++|++++..+..|.|||
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L 82 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPL 82 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHH
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence 457789999999999999999999998765 6899999999999999999999999999999999999999999999
Q ss_pred HHHHHcCcHHHHHHHHhCCCC------CCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCC-CCCcHhHHHHhcC
Q psy3308 646 HIAAKKNQMDIATTLLEYNAK------PNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAK-NGLTPLHLCAQED 718 (838)
Q Consensus 646 ~~A~~~~~~~iv~~Ll~~~~~------~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~-~~~t~l~~A~~~g 718 (838)
|+|+..|+.+++++|+++|.+ ++..+..|.||||+|+..|+.++|++|+++|++++.++. .|.||||+|+..|
T Consensus 83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~ 162 (236)
T 1ikn_D 83 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQ 162 (236)
T ss_dssp HHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcC
Confidence 999999999999999999876 466778899999999999999999999999999999997 9999999999999
Q ss_pred CHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCc--cCCCCCCcHHHHHHHhC
Q psy3308 719 KVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVN--ATTNLGYTPLHQASQQG 784 (838)
Q Consensus 719 ~~~i~~~L~~~~~~~~~~~~~g~t~l~~A~~~g~~~~v~~Ll~~g~~~~--~~~~~g~t~l~~A~~~~ 784 (838)
+.+++++|+++|++++.++..|+|||++|+..|+.+++++|+++|+++. .++..|.||.+.+....
T Consensus 163 ~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~ 230 (236)
T 1ikn_D 163 NPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFT 230 (236)
T ss_dssp CHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC----
T ss_pred CHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhcccc
Confidence 9999999999999999999999999999999999999999999999876 77888899887766443
No 46
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=1.1e-32 Score=268.89 Aligned_cols=197 Identities=28% Similarity=0.380 Sum_probs=183.8
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHhC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-----CccCCCCChHHHH
Q psy3308 574 KGFTPLHLAAKYGRMKIAQMLLQK-DAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASP-----HAVAKNGYTPLHI 647 (838)
Q Consensus 574 ~~~~~l~~a~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~-----~~~~~~~~t~L~~ 647 (838)
.|.||||.|+..|+.+++++|++. |++++.++..|.||||+|+..|+.+++++|+++|+++ +..+..|.||||.
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~ 81 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI 81 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence 478999999999999999999998 9999999999999999999999999999999999887 6667789999999
Q ss_pred HHHcCcHHHHHHHHhCCCCCCCCCC-------------CCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHhHHH
Q psy3308 648 AAKKNQMDIATTLLEYNAKPNAESK-------------AGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLC 714 (838)
Q Consensus 648 A~~~~~~~iv~~Ll~~~~~~~~~~~-------------~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A 714 (838)
|+..|+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|+++|++++.++..|.||||+|
T Consensus 82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A 161 (232)
T 2rfa_A 82 AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHIL 161 (232)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred HHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence 9999999999999999999998865 799999999999999999999999999999999999999999
Q ss_pred HhcCCHHHH----HHHHhCCCCC------CCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccCC
Q psy3308 715 AQEDKVNVA----TITMFNGAEI------DPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATT 770 (838)
Q Consensus 715 ~~~g~~~i~----~~L~~~~~~~------~~~~~~g~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~ 770 (838)
+..|+.+++ ++|+++|+++ +.+|..|+|||++|+..|+.+++++|+++|++.....
T Consensus 162 ~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~~~~~~ 227 (232)
T 2rfa_A 162 ILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAAH 227 (232)
T ss_dssp HTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred HHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCccchhhh
Confidence 999999988 9999999987 5889999999999999999999999999987765543
No 47
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=1.5e-33 Score=282.33 Aligned_cols=206 Identities=22% Similarity=0.254 Sum_probs=151.9
Q ss_pred CCCCCCCCcHHHHHHHcCCHHHHHHHHh----CCCCCC----ccCCCCChHHHHHHHc---CcHHHHHHHHhCCCC----
Q psy3308 602 DSQGKNGVTPLHVASHYDHQNVALLLLD----RGASPH----AVAKNGYTPLHIAAKK---NQMDIATTLLEYNAK---- 666 (838)
Q Consensus 602 ~~~~~~~~~~l~~A~~~~~~~~v~~Ll~----~g~~~~----~~~~~~~t~L~~A~~~---~~~~iv~~Ll~~~~~---- 666 (838)
+..+..|.|||+.|+..|+.++++.|++ .+.+++ ..+..|.||||+|+.. |+.+++++|+++|++
T Consensus 7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~ 86 (273)
T 2pnn_A 7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSL 86 (273)
T ss_dssp ----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCH
T ss_pred CCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccch
Confidence 3345555556666666665555555444 344443 2345566666666654 666666666665433
Q ss_pred -------CCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCC--------------CCCcHhHHHHhcCCHHHHHH
Q psy3308 667 -------PNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAK--------------NGLTPLHLCAQEDKVNVATI 725 (838)
Q Consensus 667 -------~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~--------------~~~t~l~~A~~~g~~~i~~~ 725 (838)
....+..|.||||+|+..|+.++|++|+++|++++..+. .|.||||+|+..|+.+++++
T Consensus 87 ~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~ 166 (273)
T 2pnn_A 87 KQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKF 166 (273)
T ss_dssp HHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHH
T ss_pred hHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHH
Confidence 122456788888888888888888888888888888776 79999999999999999999
Q ss_pred HHh---CCCCCCCCCCCCCcHHHHHHHcCC---------HHHHHHHHHCCCCCc-------cCCCCCCcHHHHHHHhCcH
Q psy3308 726 TMF---NGAEIDPVTKAGFTPLHIASHFGQ---------LNMVRYLVENGANVN-------ATTNLGYTPLHQASQQGRV 786 (838)
Q Consensus 726 L~~---~~~~~~~~~~~g~t~l~~A~~~g~---------~~~v~~Ll~~g~~~~-------~~~~~g~t~l~~A~~~~~~ 786 (838)
|++ +|++++.+|..|+||||+|+..|+ .+++++|+++|++++ ..|..|+||||+|++.|+.
T Consensus 167 Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~ 246 (273)
T 2pnn_A 167 LLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKI 246 (273)
T ss_dssp HHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCH
T ss_pred HHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChH
Confidence 999 899999999999999999999998 899999999999997 4899999999999999999
Q ss_pred HHHHHHHhCCC-CCCCCCCccc
Q psy3308 787 LIIDLLLGAGA-QPNATTNLFC 807 (838)
Q Consensus 787 ~~v~~Ll~~ga-~~~~~~~~~~ 807 (838)
++|++|+++|| ||..+...+.
T Consensus 247 ~iv~~Ll~~ga~dp~~~~~~~~ 268 (273)
T 2pnn_A 247 GVLAYILQREIHEPECRHAAAH 268 (273)
T ss_dssp HHHHHHHHHHTC----------
T ss_pred HHHHHHHHCCCCCchhhhhhhh
Confidence 99999999999 8887766554
No 48
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=2.9e-32 Score=247.01 Aligned_cols=159 Identities=31% Similarity=0.498 Sum_probs=131.9
Q ss_pred cHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCcHHH
Q psy3308 610 TPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDM 689 (838)
Q Consensus 610 ~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~i 689 (838)
++|+.|+..|+.++|++|+++|++++..+..|+|||+.|+..++.+++++|++.|++++.++..|+|||++|+..|+.++
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~ 85 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEV 85 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHH
Confidence 36778888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHhCCCCCCCCCCCCCcHhHHHHhcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcc
Q psy3308 690 SSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNA 768 (838)
Q Consensus 690 v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~i~~~L~~~~~~~~~~~~~g~t~l~~A~~~g~~~~v~~Ll~~g~~~~~ 768 (838)
|++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|+|||++|+..|+.+++++|+++|++++.
T Consensus 86 v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie~ 164 (169)
T 4gpm_A 86 VKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLEH 164 (169)
T ss_dssp HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC------
T ss_pred HHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCC
Confidence 8888888888888888888888888888888888888888888888888888888888888888888888888888754
No 49
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=2.1e-33 Score=278.33 Aligned_cols=193 Identities=22% Similarity=0.233 Sum_probs=154.5
Q ss_pred CCcHHHHHHHcCCHH----HHHHHHhCCCCCCc----cCCCCChHHHHHHHc---CcHHHHHHHHhCCCCCCC-------
Q psy3308 608 GVTPLHVASHYDHQN----VALLLLDRGASPHA----VAKNGYTPLHIAAKK---NQMDIATTLLEYNAKPNA------- 669 (838)
Q Consensus 608 ~~~~l~~A~~~~~~~----~v~~Ll~~g~~~~~----~~~~~~t~L~~A~~~---~~~~iv~~Ll~~~~~~~~------- 669 (838)
|.||||.|+..|+.+ ++++|++.|++++. .+..|.||||+|+.. |+.+++++|++.|++++.
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~ 81 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA 81 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccc
Confidence 456666666666664 44555556666665 566666666666666 666666666666555442
Q ss_pred ----CCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCC-------------CCcHhHHHHhcCCHHHHHHHHh---C
Q psy3308 670 ----ESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKN-------------GLTPLHLCAQEDKVNVATITMF---N 729 (838)
Q Consensus 670 ----~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~-------------~~t~l~~A~~~g~~~i~~~L~~---~ 729 (838)
.+..|.||||+|+..|+.++|++|+++|++++..+.. |.||||+|+..|+.+++++|++ +
T Consensus 82 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ 161 (256)
T 2etb_A 82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQ 161 (256)
T ss_dssp CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSC
T ss_pred ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence 2356778888888888888888888888887777765 9999999999999999999999 8
Q ss_pred CCCCCCCCCCCCcHHHHHHH--cCCHH-------HHHHHHHCCCCC-------ccCCCCCCcHHHHHHHhCcHHHHHHHH
Q psy3308 730 GAEIDPVTKAGFTPLHIASH--FGQLN-------MVRYLVENGANV-------NATTNLGYTPLHQASQQGRVLIIDLLL 793 (838)
Q Consensus 730 ~~~~~~~~~~g~t~l~~A~~--~g~~~-------~v~~Ll~~g~~~-------~~~~~~g~t~l~~A~~~~~~~~v~~Ll 793 (838)
|++++.+|..|+||||+|+. .++.+ ++++|+++|+++ +..|..|+||||+|++.|+.+++++|+
T Consensus 162 ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll 241 (256)
T 2etb_A 162 PASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHIL 241 (256)
T ss_dssp CCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999998 78888 999999999999 899999999999999999999999999
Q ss_pred hCCCCCC
Q psy3308 794 GAGAQPN 800 (838)
Q Consensus 794 ~~ga~~~ 800 (838)
++|+++.
T Consensus 242 ~~g~~~~ 248 (256)
T 2etb_A 242 QREFSGA 248 (256)
T ss_dssp HHHHHHH
T ss_pred hCCCCCC
Confidence 9987553
No 50
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=2.2e-31 Score=253.28 Aligned_cols=190 Identities=25% Similarity=0.323 Sum_probs=183.6
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHhCCC-CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHcC
Q psy3308 574 KGFTPLHLAAKYGRMKIAQMLLQKDA-PVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKN 652 (838)
Q Consensus 574 ~~~~~l~~a~~~~~~~~v~~Ll~~~~-~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~ 652 (838)
.+.+||+.|+..|+.+.+++|++.+. +++..+..|.|||++|+..|+.+++++|+++|++++..+..|.||||.|+..|
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 83 (201)
T 3hra_A 4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQG 83 (201)
T ss_dssp CCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred ccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence 56899999999999999999999876 99999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHH-hCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCC-CCCCCCCCCCCcHhHHHHhcCC-----HHHHHH
Q psy3308 653 QMDIATTLL-EYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHG-ATVSHQAKNGLTPLHLCAQEDK-----VNVATI 725 (838)
Q Consensus 653 ~~~iv~~Ll-~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g-~~~~~~~~~~~t~l~~A~~~g~-----~~i~~~ 725 (838)
+.+++++|+ ..+.+++..+..|.|||++|+..|+.+++++|+++| ++++.++..|.||||+|+..++ .+++++
T Consensus 84 ~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~ 163 (201)
T 3hra_A 84 RTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKL 163 (201)
T ss_dssp CHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHH
T ss_pred CHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHH
Confidence 999999999 577899999999999999999999999999999999 9999999999999999999998 999999
Q ss_pred HHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCC
Q psy3308 726 TMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENG 763 (838)
Q Consensus 726 L~~~~~~~~~~~~~g~t~l~~A~~~g~~~~v~~Ll~~g 763 (838)
|+++|++++.+|..|+|||++|+..|+.+++++|+++|
T Consensus 164 Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 164 LMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred HHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 99999999999999999999999999999999999986
No 51
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=3.8e-32 Score=272.08 Aligned_cols=209 Identities=21% Similarity=0.270 Sum_probs=177.1
Q ss_pred ccccCCCCCcHHHHHHHcCcHHHHHHHHh----CCCCCC----CCCCCCCcHHHHHHHc---CCHHHHHHHHhCCCCC--
Q psy3308 568 ITATTKKGFTPLHLAAKYGRMKIAQMLLQ----KDAPVD----SQGKNGVTPLHVASHY---DHQNVALLLLDRGASP-- 634 (838)
Q Consensus 568 ~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~----~~~~~~----~~~~~~~~~l~~A~~~---~~~~~v~~Ll~~g~~~-- 634 (838)
.+..+..|.|||+.|+..|+.++|+.|++ .+.+++ ..+..|.||||+|+.. |+.+++++|++.|+++
T Consensus 6 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~ 85 (273)
T 2pnn_A 6 EKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDS 85 (273)
T ss_dssp -----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTC
T ss_pred CCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccc
Confidence 34567789999999999999998888876 566666 4578999999999987 9999999999998653
Q ss_pred -----C----ccCCCCChHHHHHHHcCcHHHHHHHHhCCCCCCCCCC--------------CCCcHHHHHHHcCcHHHHH
Q psy3308 635 -----H----AVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESK--------------AGFTPLHLSAQEGHTDMSS 691 (838)
Q Consensus 635 -----~----~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~--------------~g~t~L~~A~~~g~~~iv~ 691 (838)
+ ..+..|.||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..|+.++|+
T Consensus 86 ~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~ 165 (273)
T 2pnn_A 86 LKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVK 165 (273)
T ss_dssp HHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHH
T ss_pred hhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHH
Confidence 2 2456899999999999999999999999999999987 7999999999999999999
Q ss_pred HHHh---CCCCCCCCCCCCCcHhHHHHhcCC---------HHHHHHHHhCCCCCC-------CCCCCCCcHHHHHHHcCC
Q psy3308 692 LLIE---HGATVSHQAKNGLTPLHLCAQEDK---------VNVATITMFNGAEID-------PVTKAGFTPLHIASHFGQ 752 (838)
Q Consensus 692 ~Ll~---~g~~~~~~~~~~~t~l~~A~~~g~---------~~i~~~L~~~~~~~~-------~~~~~g~t~l~~A~~~g~ 752 (838)
+|++ +|++++.++..|.||||+|+..|+ .+++++|+++|++++ .+|..|+||||+|+..|+
T Consensus 166 ~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~ 245 (273)
T 2pnn_A 166 FLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGK 245 (273)
T ss_dssp HHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred HHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhCh
Confidence 9999 999999999999999999999998 899999999999987 489999999999999999
Q ss_pred HHHHHHHHHCCC-CCccCCCCCCcH
Q psy3308 753 LNMVRYLVENGA-NVNATTNLGYTP 776 (838)
Q Consensus 753 ~~~v~~Ll~~g~-~~~~~~~~g~t~ 776 (838)
.+++++|+++|+ |+......+.+|
T Consensus 246 ~~iv~~Ll~~ga~dp~~~~~~~~~~ 270 (273)
T 2pnn_A 246 IGVLAYILQREIHEPECRHAAAHHH 270 (273)
T ss_dssp HHHHHHHHHHHTC------------
T ss_pred HHHHHHHHHCCCCCchhhhhhhhhc
Confidence 999999999999 888877766655
No 52
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=5.1e-32 Score=268.38 Aligned_cols=193 Identities=21% Similarity=0.255 Sum_probs=180.8
Q ss_pred CCcHHHHHHHcCcHH----HHHHHHhCCCCCCC----CCCCCCcHHHHHHHc---CCHHHHHHHHhCCCCCCccC-----
Q psy3308 575 GFTPLHLAAKYGRMK----IAQMLLQKDAPVDS----QGKNGVTPLHVASHY---DHQNVALLLLDRGASPHAVA----- 638 (838)
Q Consensus 575 ~~~~l~~a~~~~~~~----~v~~Ll~~~~~~~~----~~~~~~~~l~~A~~~---~~~~~v~~Ll~~g~~~~~~~----- 638 (838)
|.||||.|+..|+.+ ++++|++.|++++. .+..|.||||+|+.. |+.+++++|++.|++++..+
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~ 81 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA 81 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccc
Confidence 679999999999997 77888889999998 899999999999999 99999999999988876433
Q ss_pred ------CCCChHHHHHHHcCcHHHHHHHHhCCCCCCCCCCC-------------CCcHHHHHHHcCcHHHHHHHHh---C
Q psy3308 639 ------KNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKA-------------GFTPLHLSAQEGHTDMSSLLIE---H 696 (838)
Q Consensus 639 ------~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~-------------g~t~L~~A~~~g~~~iv~~Ll~---~ 696 (838)
..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.++|++|++ +
T Consensus 82 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ 161 (256)
T 2etb_A 82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQ 161 (256)
T ss_dssp CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSC
T ss_pred ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence 67999999999999999999999999999999886 9999999999999999999999 9
Q ss_pred CCCCCCCCCCCCcHhHHHHh--cCCHH-------HHHHHHhCCCCC-------CCCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy3308 697 GATVSHQAKNGLTPLHLCAQ--EDKVN-------VATITMFNGAEI-------DPVTKAGFTPLHIASHFGQLNMVRYLV 760 (838)
Q Consensus 697 g~~~~~~~~~~~t~l~~A~~--~g~~~-------i~~~L~~~~~~~-------~~~~~~g~t~l~~A~~~g~~~~v~~Ll 760 (838)
|++++.++..|.||||+|+. .++.+ ++++|+++|+++ +.+|..|+||||+|+..|+.+++++|+
T Consensus 162 ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll 241 (256)
T 2etb_A 162 PASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHIL 241 (256)
T ss_dssp CCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999 88888 999999999999 889999999999999999999999999
Q ss_pred HCCCCCc
Q psy3308 761 ENGANVN 767 (838)
Q Consensus 761 ~~g~~~~ 767 (838)
++|+++.
T Consensus 242 ~~g~~~~ 248 (256)
T 2etb_A 242 QREFSGA 248 (256)
T ss_dssp HHHHHHH
T ss_pred hCCCCCC
Confidence 9987653
No 53
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=8e-32 Score=267.83 Aligned_cols=196 Identities=22% Similarity=0.213 Sum_probs=152.4
Q ss_pred CCCcHHHHHHHcCCHHH----HHHHHhCCCCCCccC----CCCChHHHHHH---HcCcHHHHHHHHhCC-----------
Q psy3308 607 NGVTPLHVASHYDHQNV----ALLLLDRGASPHAVA----KNGYTPLHIAA---KKNQMDIATTLLEYN----------- 664 (838)
Q Consensus 607 ~~~~~l~~A~~~~~~~~----v~~Ll~~g~~~~~~~----~~~~t~L~~A~---~~~~~~iv~~Ll~~~----------- 664 (838)
.+.++|+.|+..|+.+. +++|++.|++++..+ ..|.||||+|+ ..|+.+++++|++.|
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~ 83 (260)
T 3jxi_A 4 FNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFIN 83 (260)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHT
T ss_pred chHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhc
Confidence 34455555555555553 333333555555443 44666666666 446666666666654
Q ss_pred CCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCC--------------CCCCcHhHHHHhcCCHHHHHHHHh--
Q psy3308 665 AKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQA--------------KNGLTPLHLCAQEDKVNVATITMF-- 728 (838)
Q Consensus 665 ~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~--------------~~~~t~l~~A~~~g~~~i~~~L~~-- 728 (838)
..++..+..|+||||+|+..|+.++|++|+++|++++..+ ..|.||||+|+..|+.+++++|++
T Consensus 84 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~ 163 (260)
T 3jxi_A 84 SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENG 163 (260)
T ss_dssp CCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred ccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 2334455578888888888888888888888888888887 579999999999999999999999
Q ss_pred -CCCCCCCCCCCCCcHHHHHHHcCC---------HHHHHHHHHCCCCC-------ccCCCCCCcHHHHHHHhCcHHHHHH
Q psy3308 729 -NGAEIDPVTKAGFTPLHIASHFGQ---------LNMVRYLVENGANV-------NATTNLGYTPLHQASQQGRVLIIDL 791 (838)
Q Consensus 729 -~~~~~~~~~~~g~t~l~~A~~~g~---------~~~v~~Ll~~g~~~-------~~~~~~g~t~l~~A~~~~~~~~v~~ 791 (838)
+|++++.+|..|+||||+|+..|+ .+++++|+++|+++ +..|..|+||||+|++.|+.++|++
T Consensus 164 ~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~ 243 (260)
T 3jxi_A 164 HKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQH 243 (260)
T ss_dssp SCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred ccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHH
Confidence 899999999999999999998887 79999999999998 6799999999999999999999999
Q ss_pred HHhCCCCCCCC
Q psy3308 792 LLGAGAQPNAT 802 (838)
Q Consensus 792 Ll~~ga~~~~~ 802 (838)
|+++|+++...
T Consensus 244 Ll~~g~~~~~~ 254 (260)
T 3jxi_A 244 IIRREIADAAA 254 (260)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHhCCCcccc
Confidence 99998866543
No 54
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.97 E-value=1.9e-29 Score=231.54 Aligned_cols=158 Identities=33% Similarity=0.531 Sum_probs=148.3
Q ss_pred CCCChHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHhHHHHhcC
Q psy3308 639 KNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQED 718 (838)
Q Consensus 639 ~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~g 718 (838)
..+.++|+.|+..|+.++|++|+++|++++..+..|.|||++|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus 12 ~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 91 (169)
T 2y1l_E 12 SDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFG 91 (169)
T ss_dssp -CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred CcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHhCcHHHHHHHHhCC
Q psy3308 719 KVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAG 796 (838)
Q Consensus 719 ~~~i~~~L~~~~~~~~~~~~~g~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g 796 (838)
+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..|..|.|||++|++.|+.+++++|+++|
T Consensus 92 ~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 92 HLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999986
No 55
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.97 E-value=5e-30 Score=236.59 Aligned_cols=168 Identities=21% Similarity=0.258 Sum_probs=149.1
Q ss_pred CChHHHHHHHcCcHHHHHHHHhCCCC-CCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHhHHHHhcCC
Q psy3308 641 GYTPLHIAAKKNQMDIATTLLEYNAK-PNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDK 719 (838)
Q Consensus 641 ~~t~L~~A~~~~~~~iv~~Ll~~~~~-~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~ 719 (838)
+.+|||.|+..|+.+++++|++.+.+ ++..+..|.|||++|+..|+.++|++|+++|++++..+..|.||||+|+..|+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 81 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY 81 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCC
Confidence 35789999999999999999988876 78888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCC
Q psy3308 720 VNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP 799 (838)
Q Consensus 720 ~~i~~~L~~~~~~~~~~~~~g~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ga~~ 799 (838)
.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++..|..|.|||++|++.|+.+++++|+++|+++
T Consensus 82 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~ 161 (172)
T 3v30_A 82 TDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKL 161 (172)
T ss_dssp HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCccch
Q psy3308 800 NATTNLFCC 808 (838)
Q Consensus 800 ~~~~~~~~~ 808 (838)
..++..+.|
T Consensus 162 ~~~~~~~~~ 170 (172)
T 3v30_A 162 FQSNLVPAD 170 (172)
T ss_dssp SCC------
T ss_pred hcccCCCCC
Confidence 888877765
No 56
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.97 E-value=5.8e-30 Score=240.90 Aligned_cols=163 Identities=23% Similarity=0.296 Sum_probs=147.2
Q ss_pred CCccCCCCChHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHhHH
Q psy3308 634 PHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHL 713 (838)
Q Consensus 634 ~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~ 713 (838)
++..+..|+||||.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 107 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMW 107 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHH
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Confidence 34567788889999998888999999998888888888888999999999999999999999999998888899999999
Q ss_pred HHhcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHhCcHHHHHHHH
Q psy3308 714 CAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLL 793 (838)
Q Consensus 714 A~~~g~~~i~~~L~~~~~~~~~~~~~g~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll 793 (838)
|+..|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++..|..|.|||++|+..|+.+++++|+
T Consensus 108 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll 187 (192)
T 2rfm_A 108 SIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFT 187 (192)
T ss_dssp HHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCC
Q psy3308 794 GAG 796 (838)
Q Consensus 794 ~~g 796 (838)
++|
T Consensus 188 ~~~ 190 (192)
T 2rfm_A 188 EVR 190 (192)
T ss_dssp HHH
T ss_pred hcc
Confidence 864
No 57
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.97 E-value=8.7e-30 Score=232.60 Aligned_cols=158 Identities=25% Similarity=0.351 Sum_probs=148.2
Q ss_pred CCChHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHhHHHHhcCC
Q psy3308 640 NGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDK 719 (838)
Q Consensus 640 ~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~ 719 (838)
...|||+.|+..|+.+++++|++.|++++..+..|.|||++|+. |+.+++++|+++|++++.++..|.||||+|+..|+
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 82 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGF 82 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence 45689999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCC-CccCCCCCCcHHHHHHHhCcHHHHHHHHhCCCC
Q psy3308 720 VNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGAN-VNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQ 798 (838)
Q Consensus 720 ~~i~~~L~~~~~~~~~~~~~g~t~l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ga~ 798 (838)
.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++ ++..|..|.|||++|++.|+.+++++|+++|||
T Consensus 83 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 83 LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162 (162)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999998 599999999999999999999999999999986
No 58
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=2.4e-30 Score=257.85 Aligned_cols=186 Identities=21% Similarity=0.296 Sum_probs=166.2
Q ss_pred cHHHHHHHcCCHHHHHHHHhCCCC--CCccCCCCChHHHHHHHcCcHHHHHHHHhCCC-CCCCCCCCCCcHHHHHH----
Q psy3308 610 TPLHVASHYDHQNVALLLLDRGAS--PHAVAKNGYTPLHIAAKKNQMDIATTLLEYNA-KPNAESKAGFTPLHLSA---- 682 (838)
Q Consensus 610 ~~l~~A~~~~~~~~v~~Ll~~g~~--~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~-~~~~~~~~g~t~L~~A~---- 682 (838)
++++.|+..++.+.++.+++.+.+ ++..|..|.||||+|+..|+.+++++|++.|+ +++..+..|.|||++|+
T Consensus 78 ~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~ 157 (276)
T 4hbd_A 78 SDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATL 157 (276)
T ss_dssp TTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHh
Confidence 456677777777777777766554 77788888999999999999999999999887 88888889999999988
Q ss_pred -HcCcHHHHHHHHhCCCCCCCCCCCCCcHhHHHHhcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy3308 683 -QEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVE 761 (838)
Q Consensus 683 -~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~i~~~L~~~~~~~~~~~~~g~t~l~~A~~~g~~~~v~~Ll~ 761 (838)
..++.+++++|++.|...+..+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++
T Consensus 158 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~ 237 (276)
T 4hbd_A 158 KTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLA 237 (276)
T ss_dssp CSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred hhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHh
Confidence 6688999999999998888888899999999999999999999999999999999999999999999999999999999
Q ss_pred -CCCCCccCCCCCCcHHHHHHHhCcHHHHHHHHhC
Q psy3308 762 -NGANVNATTNLGYTPLHQASQQGRVLIIDLLLGA 795 (838)
Q Consensus 762 -~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 795 (838)
.|++++..|..|.|||++|++.|+.+++++|+++
T Consensus 238 ~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ 272 (276)
T 4hbd_A 238 VPSCDISLTDRDGSTALMVALDAGQSEIASMLYSR 272 (276)
T ss_dssp STTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred cCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 8999999999999999999999999999999986
No 59
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.97 E-value=1.3e-29 Score=232.44 Aligned_cols=161 Identities=22% Similarity=0.303 Sum_probs=152.5
Q ss_pred CCChHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHhHHHHhcCC
Q psy3308 640 NGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDK 719 (838)
Q Consensus 640 ~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~ 719 (838)
.|.||||.|+..|+.+++++|++.|.+++..+..|.|||++|+..|+.+++++|+++|++++..+..|.||||+|+..|+
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 81 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGY 81 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCC
Q psy3308 720 VNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP 799 (838)
Q Consensus 720 ~~i~~~L~~~~~~~~~~~~~g~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ga~~ 799 (838)
.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++..|..|.|||++|++.|+.+++++|++++++.
T Consensus 82 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~ 161 (167)
T 3v31_A 82 TDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKL 161 (167)
T ss_dssp HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred C
Q psy3308 800 N 800 (838)
Q Consensus 800 ~ 800 (838)
.
T Consensus 162 ~ 162 (167)
T 3v31_A 162 L 162 (167)
T ss_dssp C
T ss_pred H
Confidence 3
No 60
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.96 E-value=1.3e-32 Score=282.48 Aligned_cols=254 Identities=12% Similarity=0.119 Sum_probs=124.0
Q ss_pred cHHHHHHHcCcHHHHHHHHHCCCCC---CccccCCCcHHHHHHHcCCHHHHHHHHHcCCCC---ccccCCCCcHHHHHHH
Q psy3308 97 TPLYMAAQENHDGVVRYLLSKGGNQ---TLATEHNITPLHVACKWGKVAMVELLISKGANI---EAKTRDGLTPLHCAAR 170 (838)
Q Consensus 97 t~l~~A~~~g~~~~v~~L~~~~~~~---~~~~~~~~~~l~~Aa~~g~~~iv~~L~~~~~~~---~~~~~~~~tal~~A~~ 170 (838)
||||+|+..|+.++|++|+++|+.. +..+..|.||||+||.+|+.++|++|+++|+++ +..+.+ .||||+||.
T Consensus 94 T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~ 172 (376)
T 2aja_A 94 VICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAE 172 (376)
T ss_dssp HHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHH
Confidence 6666666666666666666665521 122334456666666666666666666666431 111222 566666666
Q ss_pred cCCHHHHHHHHHcCCCccC--CCCCCccHHHHHH-hCCcHHHHHHHHhCCCCCCcccCCCccHHHHHHhcCCHHHHHHHH
Q psy3308 171 SGHDNVIDILIEKGAALYS--KTKNGLAPLHMAS-QGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLL 247 (838)
Q Consensus 171 ~g~~~iv~~L~~~~~~~~~--~~~~~~~~l~~A~-~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~A~~~g~~~iv~~L~ 247 (838)
.|+.++|++|+++|++++. .+..|.|||++|+ .+|+.++|++|+++|. .+.|||+.|+.+|+.+++++|+
T Consensus 173 ~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-------~~~taL~~Aa~~g~~evv~lL~ 245 (376)
T 2aja_A 173 NGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV-------MLAYAEIHEFEYGEKYVNPFIA 245 (376)
T ss_dssp TTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH-------HHHHHHHCTTTTTTTTHHHHHH
T ss_pred CCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC-------ccchHHHHHHHCCCHHHHHHHH
Confidence 6666666666666666443 4455566666666 6666666666666542 2456666666666666666666
Q ss_pred HCCCCccccccCCCchHHHHHhhCCccccccC----hHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy3308 248 DRKADPNARALNGFTPLHIACKKNRYKSSHCN----HVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKY 323 (838)
Q Consensus 248 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~----~~~i~~~Ll~~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~L~~~ 323 (838)
++|++++..+ ++++.|+.+|..+..... ...+++.|+..+. .+..+.+++|++.
T Consensus 246 ~~ga~~~~~~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~------------------~~~~~~~~~Ll~~ 303 (376)
T 2aja_A 246 RHVNRLKEMH----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRND------------------EVLLDDIRFLLSI 303 (376)
T ss_dssp HHHHHHHHHH----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCC------------------GGGHHHHHHHHTS
T ss_pred hcCccccccc----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcch------------------hhHHHHHHHHHhC
Confidence 6665544432 244445544443321100 1113344444321 1224445555542
Q ss_pred ---------CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHH
Q psy3308 324 ---------GASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILL 387 (838)
Q Consensus 324 ---------~~~~~~~~~~~~~~l~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~l~~A~~~g~~~iv~~Ll 387 (838)
|+++ ..+.+||++|+..|+.+++++|++.+ ...+..+.+++.+|-..|+.++.+.-.
T Consensus 304 ~~vk~l~~~g~~~----n~~~~~L~~A~~~g~~e~v~lLl~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (376)
T 2aja_A 304 PGIKALAPTATIP----GDANELLRLALRLGNQGACALLLSIP---SVLALTKANNYYINETGGRLDLRAVAL 369 (376)
T ss_dssp TTTGGGSSCCSST----TCCCHHHHHHHHHTCTTHHHHHTTSH---HHHHSCC--------------------
T ss_pred hhhhhhhccCCCC----CCccHHHHHHHHcCcHHHHHHHHcCh---HHHHHHHHhccccccccccccHHHHHH
Confidence 2222 23446677777777777777776543 334445566666666667666666544
No 61
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.96 E-value=2.4e-30 Score=257.18 Aligned_cols=196 Identities=21% Similarity=0.257 Sum_probs=177.0
Q ss_pred CCCCcHHHHHHHcCcHH----HHHHHHhCCCCCCCCC----CCCCcHHHHHH---HcCCHHHHHHHHhCCCC--------
Q psy3308 573 KKGFTPLHLAAKYGRMK----IAQMLLQKDAPVDSQG----KNGVTPLHVAS---HYDHQNVALLLLDRGAS-------- 633 (838)
Q Consensus 573 ~~~~~~l~~a~~~~~~~----~v~~Ll~~~~~~~~~~----~~~~~~l~~A~---~~~~~~~v~~Ll~~g~~-------- 633 (838)
..+.++|+.|+..|+.+ ++++|++.+.+++..+ ..|.||||+|+ ..|+.+++++|++.|++
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~ 82 (260)
T 3jxi_A 3 VFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFI 82 (260)
T ss_dssp CCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhh
Confidence 45779999999999999 4555556899998665 67999999999 67999999999998744
Q ss_pred ---CCccCCCCChHHHHHHHcCcHHHHHHHHhCCCCCCCCC--------------CCCCcHHHHHHHcCcHHHHHHHHh-
Q psy3308 634 ---PHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAES--------------KAGFTPLHLSAQEGHTDMSSLLIE- 695 (838)
Q Consensus 634 ---~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~--------------~~g~t~L~~A~~~g~~~iv~~Ll~- 695 (838)
.+..+..|.||||+|+..|+.++|++|+++|++++..+ ..|.||||+|+..|+.++|++|++
T Consensus 83 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~ 162 (260)
T 3jxi_A 83 NSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTEN 162 (260)
T ss_dssp TCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHC
T ss_pred cccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 34445589999999999999999999999999999998 689999999999999999999999
Q ss_pred --CCCCCCCCCCCCCcHhHHHHhcCC---------HHHHHHHHhCCCCC-------CCCCCCCCcHHHHHHHcCCHHHHH
Q psy3308 696 --HGATVSHQAKNGLTPLHLCAQEDK---------VNVATITMFNGAEI-------DPVTKAGFTPLHIASHFGQLNMVR 757 (838)
Q Consensus 696 --~g~~~~~~~~~~~t~l~~A~~~g~---------~~i~~~L~~~~~~~-------~~~~~~g~t~l~~A~~~g~~~~v~ 757 (838)
+|++++.++..|.||||+|+..|+ .+++++|+++|+++ +.+|..|+||||+|+..|+.++++
T Consensus 163 ~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~ 242 (260)
T 3jxi_A 163 GHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQ 242 (260)
T ss_dssp SSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred cccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHH
Confidence 999999999999999999998887 79999999999998 679999999999999999999999
Q ss_pred HHHHCCCCCcc
Q psy3308 758 YLVENGANVNA 768 (838)
Q Consensus 758 ~Ll~~g~~~~~ 768 (838)
+|+++|+++..
T Consensus 243 ~Ll~~g~~~~~ 253 (260)
T 3jxi_A 243 HIIRREIADAA 253 (260)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHhCCCccc
Confidence 99999876543
No 62
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.96 E-value=5.8e-29 Score=230.90 Aligned_cols=168 Identities=25% Similarity=0.353 Sum_probs=156.0
Q ss_pred CCChHHHHHHHcCcHHHHHHHHhC-CCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHhHHHHhcC
Q psy3308 640 NGYTPLHIAAKKNQMDIATTLLEY-NAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQED 718 (838)
Q Consensus 640 ~~~t~L~~A~~~~~~~iv~~Ll~~-~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~g 718 (838)
.+.++|+.|+..|+.+++++|++. +.+++..+..|.|||++|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus 4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 83 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHG 83 (179)
T ss_dssp ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence 466899999999999999999987 6778999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHhCcHHHHHHHHhCCCC
Q psy3308 719 KVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQ 798 (838)
Q Consensus 719 ~~~i~~~L~~~~~~~~~~~~~g~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ga~ 798 (838)
+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..|..|.|||++|+..++.+++++|+++|++
T Consensus 84 ~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~ 163 (179)
T 3f6q_A 84 HRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQN 163 (179)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccc
Q psy3308 799 PNATTNLFC 807 (838)
Q Consensus 799 ~~~~~~~~~ 807 (838)
++..+..+.
T Consensus 164 ~~~~~~~~~ 172 (179)
T 3f6q_A 164 LNRIPYKDT 172 (179)
T ss_dssp CSCBCCCCT
T ss_pred cccCCcccc
Confidence 998776553
No 63
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.96 E-value=1.2e-31 Score=275.35 Aligned_cols=287 Identities=16% Similarity=0.120 Sum_probs=186.2
Q ss_pred cCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHH-cCcHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHc
Q psy3308 72 TGQEEVAKILVDNGATINVQSLNGFTPLYMAAQ-ENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISK 150 (838)
Q Consensus 72 ~g~~~~v~~l~~~~~~~~~~~~~~~t~l~~A~~-~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~Aa~~g~~~iv~~L~~~ 150 (838)
.+..+.+..++++..+++.. .+.+++++|.. .++.+++++|+++|.+. .||||+||+.|+.++|++|+++
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~--~~ll~~~~a~~~~~~~~~~~~l~~~g~~~-------~T~Lh~Aa~~G~~e~v~~Ll~~ 114 (376)
T 2aja_A 44 LSYKEAIHIFLPGTKNMEQV--RQLLCLYYAHYNRNAKQLWSDAHKKGIKS-------EVICFVAAITGCSSALDTLCLL 114 (376)
T ss_dssp SCHHHHHHHCCCCSSHHHHH--HHHHHHHHHHTTTTCTTHHHHHHHHTCCH-------HHHHHHHHHHCCHHHHHHHTTC
T ss_pred ccHHHHHHHHhcCCCCHHHH--HHHHHHHHHHhcCCCHHHHHHHHHcCCCc-------CCHHHHHHHcCCHHHHHHHHHc
Confidence 34555555555544333221 23456777666 57788888888876652 3888888888888888888888
Q ss_pred CCCC---ccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCc---cCCCCCCccHHHHHHhCCcHHHHHHHHhCCCCCCc--
Q psy3308 151 GANI---EAKTRDGLTPLHCAARSGHDNVIDILIEKGAAL---YSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDE-- 222 (838)
Q Consensus 151 ~~~~---~~~~~~~~tal~~A~~~g~~~iv~~L~~~~~~~---~~~~~~~~~~l~~A~~~g~~~~v~~L~~~~~~~~~-- 222 (838)
|+.. +..+..+.||||+||+.|+.++|++|+++|++. +..+.. .|||++|+..|+.++|++|+++|++++.
T Consensus 115 ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~ 193 (376)
T 2aja_A 115 LTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAM 193 (376)
T ss_dssp --CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHH
T ss_pred CCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhc
Confidence 7621 123445678888888888888888888888641 112222 7888888888888888888888877665
Q ss_pred ccCCCccHHHHHH-hcCCHHHHHHHHHCCCCccccccCCCchHHHHHhhCCccccccChHHHHHHHHhCCCCCCCCCCCC
Q psy3308 223 ITVDYLTALHVAS-HCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNG 301 (838)
Q Consensus 223 ~~~~~~~~l~~A~-~~g~~~iv~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~ 301 (838)
.+..+.|||++|+ .+|+.++|++|++.|. .+.||++.|+.+| +.+++++|+++|++++..+
T Consensus 194 ~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-------~~~taL~~Aa~~g--------~~evv~lL~~~ga~~~~~~--- 255 (376)
T 2aja_A 194 IQAENYYAFRWAAVGRGHHNVINFLLDCPV-------MLAYAEIHEFEYG--------EKYVNPFIARHVNRLKEMH--- 255 (376)
T ss_dssp HHHHHHHHHHHHHSTTCCHHHHHHHTTSHH-------HHHHHHHCTTTTT--------TTTHHHHHHHHHHHHHHHH---
T ss_pred cCCCCCCHHHHHHHHCCCHHHHHHHHhCCC-------ccchHHHHHHHCC--------CHHHHHHHHhcCccccccc---
Confidence 6667788888888 8888888888887653 2678888888877 5568888888877665443
Q ss_pred CcHHHHHHHcCCHHH------------HHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHc---------CCCC
Q psy3308 302 FTPLHIACKKNRYKV------------VELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQA---------GAAP 360 (838)
Q Consensus 302 ~~~l~~A~~~g~~~~------------v~~L~~~~~~~~~~~~~~~~~l~~A~~~g~~~iv~~Ll~~---------~~~~ 360 (838)
++++.|+.+|++++ ++.|+..+ ..+..+.+++|++. |.++
T Consensus 256 -~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~------------------~~~~~~~~~~Ll~~~~vk~l~~~g~~~ 316 (376)
T 2aja_A 256 -DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRN------------------DEVLLDDIRFLLSIPGIKALAPTATIP 316 (376)
T ss_dssp -TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHC------------------CGGGHHHHHHHHTSTTTGGGSSCCSST
T ss_pred -HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcc------------------hhhHHHHHHHHHhChhhhhhhccCCCC
Confidence 35667777777663 34444432 12345666777653 3332
Q ss_pred CCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCccccccCCCCHHHHHHhhCc
Q psy3308 361 DTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRR 412 (838)
Q Consensus 361 ~~~~~~~~~~l~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~~~l~~~~~~~~ 412 (838)
+ .+.+++++|+..|+.+++++|++.| ...+..+.++..++.....
T Consensus 317 n----~~~~~L~~A~~~g~~e~v~lLl~~~---~v~~~~~~~~~~~~~~~~~ 361 (376)
T 2aja_A 317 G----DANELLRLALRLGNQGACALLLSIP---SVLALTKANNYYINETGGR 361 (376)
T ss_dssp T----CCCHHHHHHHHHTCTTHHHHHTTSH---HHHHSCC------------
T ss_pred C----CccHHHHHHHHcCcHHHHHHHHcCh---HHHHHHHHhcccccccccc
Confidence 2 3457888888888888888888754 4455666677666555443
No 64
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.96 E-value=2e-28 Score=220.53 Aligned_cols=150 Identities=27% Similarity=0.393 Sum_probs=140.3
Q ss_pred ChHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHhHHHHhcCCHH
Q psy3308 642 YTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVN 721 (838)
Q Consensus 642 ~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~ 721 (838)
.++|+.|+..|+.+++++|++.|.+++ .+..|.|||++|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 81 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHAN 81 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHH
Confidence 478999999999999999999998876 5778899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHhCcHHHHHHH
Q psy3308 722 VATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLL 792 (838)
Q Consensus 722 i~~~L~~~~~~~~~~~~~g~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L 792 (838)
++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.|||++|++.|+.+++++|
T Consensus 82 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 82 IVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987
No 65
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=8e-29 Score=228.52 Aligned_cols=168 Identities=21% Similarity=0.334 Sum_probs=144.8
Q ss_pred CcHHHHHHHcCCHHHHHHHHhCCCC-CCccCCCCChHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCcH
Q psy3308 609 VTPLHVASHYDHQNVALLLLDRGAS-PHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHT 687 (838)
Q Consensus 609 ~~~l~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~ 687 (838)
.+||+.|+..|+.+++++|++.+.. ++..+..|.||||.|+..|+.+++++|+++|++++..+..|.||||+|+..|+.
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 82 (172)
T 3v30_A 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYT 82 (172)
T ss_dssp -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred hhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCH
Confidence 5788888888888888888888776 777788889999999999999999999999999998888899999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCCCcHhHHHHhcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCc
Q psy3308 688 DMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVN 767 (838)
Q Consensus 688 ~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~i~~~L~~~~~~~~~~~~~g~t~l~~A~~~g~~~~v~~Ll~~g~~~~ 767 (838)
+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|+|||++|+..|+.+++++|+++|+++.
T Consensus 83 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~ 162 (172)
T 3v30_A 83 DIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLF 162 (172)
T ss_dssp HHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence 99999999999999889999999999999999999999999999999999999999999999999999999999998888
Q ss_pred cCCCCCCcH
Q psy3308 768 ATTNLGYTP 776 (838)
Q Consensus 768 ~~~~~g~t~ 776 (838)
..+..|.||
T Consensus 163 ~~~~~~~~p 171 (172)
T 3v30_A 163 QSNLVPADP 171 (172)
T ss_dssp CC-------
T ss_pred cccCCCCCC
Confidence 888777776
No 66
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.96 E-value=3.8e-29 Score=249.14 Aligned_cols=187 Identities=22% Similarity=0.300 Sum_probs=179.0
Q ss_pred CcHHHHHHHcCcHHHHHHHHhCCCC--CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC-CCCccCCCCChHHHHHH---
Q psy3308 576 FTPLHLAAKYGRMKIAQMLLQKDAP--VDSQGKNGVTPLHVASHYDHQNVALLLLDRGA-SPHAVAKNGYTPLHIAA--- 649 (838)
Q Consensus 576 ~~~l~~a~~~~~~~~v~~Ll~~~~~--~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~~~t~L~~A~--- 649 (838)
.++++.|+..++.+.++.+++.+.+ +|..|..|.||||+|+..|+.+++++|++.|+ +++..+..|.||||.|+
T Consensus 77 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~ 156 (276)
T 4hbd_A 77 RSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALAT 156 (276)
T ss_dssp STTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCC
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHH
Confidence 4678899999999999999887655 78899999999999999999999999999998 99999999999999999
Q ss_pred --HcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHhHHHHhcCCHHHHHHHH
Q psy3308 650 --KKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITM 727 (838)
Q Consensus 650 --~~~~~~iv~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~i~~~L~ 727 (838)
..++.+++++|++.|..++..+..|.||||+|+..|+.++|++|+++|++++.++..|.||||+|+..|+.+++++|+
T Consensus 157 ~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll 236 (276)
T 4hbd_A 157 LKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLL 236 (276)
T ss_dssp CCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH
Confidence 678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred h-CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHC
Q psy3308 728 F-NGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVEN 762 (838)
Q Consensus 728 ~-~~~~~~~~~~~g~t~l~~A~~~g~~~~v~~Ll~~ 762 (838)
+ .|++++.+|..|+|||++|+..|+.+++++|+++
T Consensus 237 ~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ 272 (276)
T 4hbd_A 237 AVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSR 272 (276)
T ss_dssp TSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred hcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 9 8999999999999999999999999999999986
No 67
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.96 E-value=1.6e-28 Score=231.06 Aligned_cols=162 Identities=28% Similarity=0.344 Sum_probs=148.3
Q ss_pred CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHH
Q psy3308 602 DSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLS 681 (838)
Q Consensus 602 ~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~g~t~L~~A 681 (838)
|.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|
T Consensus 29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 108 (192)
T 2rfm_A 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWS 108 (192)
T ss_dssp TCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHH
T ss_pred hCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence 45778889999999999999999999999999998888899999999999999999999999999999999999999999
Q ss_pred HHcCcHHHHHHHHhCCCCCCCCCCCCCcHhHHHHhcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy3308 682 AQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVE 761 (838)
Q Consensus 682 ~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~i~~~L~~~~~~~~~~~~~g~t~l~~A~~~g~~~~v~~Ll~ 761 (838)
+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|+|||++|+..|+.+++++|++
T Consensus 109 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~ 188 (192)
T 2rfm_A 109 IIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTE 188 (192)
T ss_dssp HHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q psy3308 762 NG 763 (838)
Q Consensus 762 ~g 763 (838)
+|
T Consensus 189 ~~ 190 (192)
T 2rfm_A 189 VR 190 (192)
T ss_dssp HH
T ss_pred cc
Confidence 53
No 68
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.96 E-value=1.1e-28 Score=225.93 Aligned_cols=159 Identities=29% Similarity=0.395 Sum_probs=146.8
Q ss_pred CCCCChHHHHHHHcCcHHHHHHHHh-CCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHhHHHHh
Q psy3308 638 AKNGYTPLHIAAKKNQMDIATTLLE-YNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQ 716 (838)
Q Consensus 638 ~~~~~t~L~~A~~~~~~~iv~~Ll~-~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~ 716 (838)
+..+.++|+.|+..|+.+++++|++ .+.+++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+.
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 84 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACS 84 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHH
Confidence 4567799999999999999999998 566778888889999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHhCcHHHHHHHHhCC
Q psy3308 717 EDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAG 796 (838)
Q Consensus 717 ~g~~~i~~~L~~~~~~~~~~~~~g~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g 796 (838)
.|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.|||++|++ |+.+++++|+++|
T Consensus 85 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~g 163 (165)
T 3twr_A 85 YGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDA 163 (165)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC-
T ss_pred cCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999877 8999999999998
Q ss_pred C
Q psy3308 797 A 797 (838)
Q Consensus 797 a 797 (838)
|
T Consensus 164 A 164 (165)
T 3twr_A 164 A 164 (165)
T ss_dssp -
T ss_pred c
Confidence 6
No 69
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.96 E-value=5e-28 Score=222.03 Aligned_cols=158 Identities=30% Similarity=0.461 Sum_probs=127.3
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcC
Q psy3308 606 KNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEG 685 (838)
Q Consensus 606 ~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~g~t~L~~A~~~g 685 (838)
..+.++++.|+..|+.+++++|+++|++++..+..|.||||.|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus 12 ~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 91 (169)
T 2y1l_E 12 SDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFG 91 (169)
T ss_dssp -CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred CcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence 34556778888888888888888888777777777888888888888888888888888888888888888888888888
Q ss_pred cHHHHHHHHhCCCCCCCCCCCCCcHhHHHHhcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCC
Q psy3308 686 HTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENG 763 (838)
Q Consensus 686 ~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~i~~~L~~~~~~~~~~~~~g~t~l~~A~~~g~~~~v~~Ll~~g 763 (838)
+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+.+++++|++.|
T Consensus 92 ~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 92 HLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 888888888888888888888888888888888888888888888888888888888888888888888888888765
No 70
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.96 E-value=3.8e-28 Score=221.69 Aligned_cols=157 Identities=26% Similarity=0.338 Sum_probs=125.2
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCcH
Q psy3308 608 GVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHT 687 (838)
Q Consensus 608 ~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~ 687 (838)
..+||+.|+..|+.+++++|+++|++++..+..|.||||.|+. |+.+++++|+++|++++.++..|.||||+|+..|+.
T Consensus 5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 83 (162)
T 1ihb_A 5 WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFL 83 (162)
T ss_dssp CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred HhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 3467777777777777777777777777777777788887777 778888888888888877777788888888888888
Q ss_pred HHHHHHHhCCCCCCCCCCCCCcHhHHHHhcCCHHHHHHHHhCCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCC
Q psy3308 688 DMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAE-IDPVTKAGFTPLHIASHFGQLNMVRYLVENGAN 765 (838)
Q Consensus 688 ~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~i~~~L~~~~~~-~~~~~~~g~t~l~~A~~~g~~~~v~~Ll~~g~~ 765 (838)
+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++ ++.++..|+|||++|+..|+.+++++|+++|+|
T Consensus 84 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 84 DTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162 (162)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence 888888888888888888888888888888888888888888877 577888888888888888888888888888875
No 71
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.95 E-value=4.8e-31 Score=253.95 Aligned_cols=196 Identities=20% Similarity=0.179 Sum_probs=91.3
Q ss_pred HHHHhCCCCCCCCC---CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHcCcHHHHHHHHhCCCCCC
Q psy3308 592 QMLLQKDAPVDSQG---KNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPN 668 (838)
Q Consensus 592 ~~Ll~~~~~~~~~~---~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~ 668 (838)
+.|+++|.+++..+ ..+.|||+.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++
T Consensus 2 ~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n 81 (229)
T 2vge_A 2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVN 81 (229)
T ss_dssp --------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred eehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence 34444444443222 233344555555555555555555555555555555555555555555555555555555555
Q ss_pred CCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCC-CCCCcHhHHH--HhcCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Q psy3308 669 AESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQA-KNGLTPLHLC--AQEDKVNVATITMFNGAEIDPVTKAGFTPLH 745 (838)
Q Consensus 669 ~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~-~~~~t~l~~A--~~~g~~~i~~~L~~~~~~~~~~~~~g~t~l~ 745 (838)
..|..|+||||+|+..|+.+++++|+++|++++..+ ..|.||||+| +..|+.+++++|+++|++++..+..|.||++
T Consensus 82 ~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~ 161 (229)
T 2vge_A 82 SPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALW 161 (229)
T ss_dssp CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESS
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHH
Confidence 555555555555555555555555555555555443 3455555555 4555555555555555555544444444444
Q ss_pred HHHHcCCHHHHHHHHHCCCC--CccCCCCCCcHHHHHHHhCcHHHHH
Q psy3308 746 IASHFGQLNMVRYLVENGAN--VNATTNLGYTPLHQASQQGRVLIID 790 (838)
Q Consensus 746 ~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~l~~A~~~~~~~~v~ 790 (838)
.++..+ .+++|++.|++ ++.+|..|+||||+|++.|+.++|+
T Consensus 162 ~~~~~~---~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~ 205 (229)
T 2vge_A 162 DYSAEF---GDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVP 205 (229)
T ss_dssp CBCCSS---TTBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEE
T ss_pred HHhhcc---ccccCccccccccccccCCCcccHHHHHHHcCCcceee
Confidence 332222 12344444444 3444444555555555555544443
No 72
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.95 E-value=7.2e-28 Score=220.88 Aligned_cols=160 Identities=21% Similarity=0.310 Sum_probs=132.6
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCc
Q psy3308 607 NGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGH 686 (838)
Q Consensus 607 ~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~ 686 (838)
.|.||||.|+..|+.+++++|++.|.+++..+..|.||||.|+..|+.+++++|+++|++++..+..|.||||+|+..|+
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 81 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGY 81 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence 45678888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCcHhHHHHhcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC
Q psy3308 687 TDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANV 766 (838)
Q Consensus 687 ~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~i~~~L~~~~~~~~~~~~~g~t~l~~A~~~g~~~~v~~Ll~~g~~~ 766 (838)
.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|+|||++|+..|+.+++++|+++++++
T Consensus 82 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~ 161 (167)
T 3v31_A 82 TDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKL 161 (167)
T ss_dssp HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888875543
No 73
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.95 E-value=1.4e-27 Score=216.28 Aligned_cols=153 Identities=25% Similarity=0.393 Sum_probs=141.9
Q ss_pred CChHHHHHHHcCcHHHHHHHHhC-CCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHhHHHHhcCC
Q psy3308 641 GYTPLHIAAKKNQMDIATTLLEY-NAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDK 719 (838)
Q Consensus 641 ~~t~L~~A~~~~~~~iv~~Ll~~-~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~ 719 (838)
+.|+|+.|+..|+.+++++|++. +.+++..+..|.|||++ +..|+.+++++|+++|++++.++..|.||||+|+..|+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 80 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF 80 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence 45899999999999999999987 44888889999999999 88999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHhCcHHHHHHHHhC
Q psy3308 720 VNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGA 795 (838)
Q Consensus 720 ~~i~~~L~~~~~~~~~~~~~g~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 795 (838)
.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++ ++++..|..|.|||++|++.|+.+++++|+++
T Consensus 81 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 81 LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999 99999999999999999999999999999875
No 74
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.95 E-value=2e-30 Score=249.64 Aligned_cols=207 Identities=19% Similarity=0.173 Sum_probs=178.5
Q ss_pred HHHHHhCCCCCCccCC---CCChHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCC
Q psy3308 624 ALLLLDRGASPHAVAK---NGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATV 700 (838)
Q Consensus 624 v~~Ll~~g~~~~~~~~---~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~ 700 (838)
++.|+++|++++..+. .+.||||.|+..|+.+++++|++.|++++..+..|+||||+|+..|+.++|++|+++|+++
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~ 80 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV 80 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence 4678889888876554 4567899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcHhHHHHhcCCHHHHHHHHhCCCCCCCCC-CCCCcHHHHH--HHcCCHHHHHHHHHCCCCCccCCCCCCcHH
Q psy3308 701 SHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVT-KAGFTPLHIA--SHFGQLNMVRYLVENGANVNATTNLGYTPL 777 (838)
Q Consensus 701 ~~~~~~~~t~l~~A~~~g~~~i~~~L~~~~~~~~~~~-~~g~t~l~~A--~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l 777 (838)
+.++..|.||||+|+..|+.+++++|+++|++++..+ ..|+|||++| +..|+.+++++|+++|++++..|..|.||+
T Consensus 81 n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l 160 (229)
T 2vge_A 81 NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYAL 160 (229)
T ss_dssp TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEES
T ss_pred CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHH
Confidence 9999999999999999999999999999999999987 6999999999 999999999999999999999999999999
Q ss_pred HHHHHhCcHHHHHHHHhCCCC--CCCCCCccch-HHHHHHcCCccCcccccccccccccC
Q psy3308 778 HQASQQGRVLIIDLLLGAGAQ--PNATTNLFCC-ATILVKNGAEIDPVTKLSDEHEKSID 834 (838)
Q Consensus 778 ~~A~~~~~~~~v~~Ll~~ga~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 834 (838)
+.++... .+++|++.|++ ++.+|..|.| +++|+..|+. ++|++.+-+...++-
T Consensus 161 ~~~~~~~---~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~-~~v~~~~l~~~p~~~ 216 (229)
T 2vge_A 161 WDYSAEF---GDELSFREGESVTVLRRDGPEETDWWWAALHGQE-GYVPRNYFGLFPRVK 216 (229)
T ss_dssp SCBCCSS---TTBCCBCTTCEEEEEESSCTTCSSEEEEEETTEE-EEEEGGGEESSCCCC
T ss_pred HHHhhcc---ccccCccccccccccccCCCcccHHHHHHHcCCc-ceeehhhhhhCCCCC
Confidence 8665544 33788999999 6788999999 9999999984 888876555544443
No 75
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.95 E-value=1.9e-27 Score=220.72 Aligned_cols=167 Identities=23% Similarity=0.276 Sum_probs=139.1
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhC-CCCCCccCCCCChHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcC
Q psy3308 607 NGVTPLHVASHYDHQNVALLLLDR-GASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEG 685 (838)
Q Consensus 607 ~~~~~l~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~g~t~L~~A~~~g 685 (838)
.+.++|+.|+..|+.+++++|++. +.+++..+..|.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..|
T Consensus 4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 83 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHG 83 (179)
T ss_dssp ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence 356778888888888888888887 6677778888888888888888888888888888888888888888888888888
Q ss_pred cHHHHHHHHhCCCCCCCCCCCCCcHhHHHHhcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCC
Q psy3308 686 HTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGAN 765 (838)
Q Consensus 686 ~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~i~~~L~~~~~~~~~~~~~g~t~l~~A~~~g~~~~v~~Ll~~g~~ 765 (838)
+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|+|||++|+..++.+++++|+++|++
T Consensus 84 ~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~ 163 (179)
T 3f6q_A 84 HRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQN 163 (179)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CccCCCCC
Q psy3308 766 VNATTNLG 773 (838)
Q Consensus 766 ~~~~~~~g 773 (838)
++..+..+
T Consensus 164 ~~~~~~~~ 171 (179)
T 3f6q_A 164 LNRIPYKD 171 (179)
T ss_dssp CSCBCCCC
T ss_pred cccCCccc
Confidence 88766543
No 76
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.95 E-value=4.3e-27 Score=211.86 Aligned_cols=150 Identities=26% Similarity=0.397 Sum_probs=120.2
Q ss_pred CcHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCcHH
Q psy3308 609 VTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTD 688 (838)
Q Consensus 609 ~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~ 688 (838)
.+||+.|+..|+.+++++|+++|++++ .+..|.||||.|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 81 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHAN 81 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHH
Confidence 367777777777777777777777665 4667778888888888888888888888888877778888888888888888
Q ss_pred HHHHHHhCCCCCCCCCCCCCcHhHHHHhcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q psy3308 689 MSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYL 759 (838)
Q Consensus 689 iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~i~~~L~~~~~~~~~~~~~g~t~l~~A~~~g~~~~v~~L 759 (838)
++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|+|||++|+..|+.+++++|
T Consensus 82 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 82 IVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888876
No 77
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.95 E-value=8.2e-29 Score=241.42 Aligned_cols=183 Identities=19% Similarity=0.244 Sum_probs=129.3
Q ss_pred CCCChHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHhHHHHhcC
Q psy3308 639 KNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQED 718 (838)
Q Consensus 639 ~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~g 718 (838)
..|.||||.|+..++.++++.|+++|++++.. ..|.|||+.|+..|+.++|++|+++|++++.++..|.||||+|+..|
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g 81 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAG 81 (239)
T ss_dssp -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHT
T ss_pred ccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence 35788999999999999999999999888754 66789999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCC-cHHHHH--HHhCcHHHHHHHHhC
Q psy3308 719 KVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGY-TPLHQA--SQQGRVLIIDLLLGA 795 (838)
Q Consensus 719 ~~~i~~~L~~~~~~~~~~~~~g~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-t~l~~A--~~~~~~~~v~~Ll~~ 795 (838)
+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..+..|. |||++| +..|+.+++++|+++
T Consensus 82 ~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~ 161 (239)
T 1ycs_B 82 HTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV 161 (239)
T ss_dssp CHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999988776 999999 788999999999999
Q ss_pred CCCCCCCCCc---------cch-HHHHHHcCCccCcc
Q psy3308 796 GAQPNATTNL---------FCC-ATILVKNGAEIDPV 822 (838)
Q Consensus 796 ga~~~~~~~~---------~~~-~~~~~~~~~~~~~~ 822 (838)
|++++..+.. +++ .+++.+.|..+..+
T Consensus 162 ~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~~i~vl 198 (239)
T 1ycs_B 162 QEKMGIMNKGVIYALWDYEPQNDDELPMKEGDCMTII 198 (239)
T ss_dssp HHHTTTTGGGEEEESSCBCCSSTTBCCBCSSCEEEEC
T ss_pred hhcccccccceEEEEeccCCCCCCcccccCCCEEEEE
Confidence 9999887544 455 55566666544333
No 78
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.94 E-value=4.8e-27 Score=214.89 Aligned_cols=159 Identities=26% Similarity=0.388 Sum_probs=119.6
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCCccCCCCChHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHH
Q psy3308 605 GKNGVTPLHVASHYDHQNVALLLLDR-GASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQ 683 (838)
Q Consensus 605 ~~~~~~~l~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~g~t~L~~A~~ 683 (838)
+..+.+||+.|+..|+.+++++|++. +.+++..+..|.||||.|+..|+.+++++|+++|++++..+..|.||||+|+.
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 84 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACS 84 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHH
Confidence 34456677777777777777777763 55666666667777777777777777777777777777777777788888888
Q ss_pred cCcHHHHHHHHhCCCCCCCCCCCCCcHhHHHHhcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCC
Q psy3308 684 EGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENG 763 (838)
Q Consensus 684 ~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~i~~~L~~~~~~~~~~~~~g~t~l~~A~~~g~~~~v~~Ll~~g 763 (838)
.|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|+|||++|+. |+.+++++|+++|
T Consensus 85 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~g 163 (165)
T 3twr_A 85 YGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDA 163 (165)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC-
T ss_pred cCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhcc
Confidence 888888888888887777777778888888888888888888888888887788888888887665 7778888887776
Q ss_pred C
Q psy3308 764 A 764 (838)
Q Consensus 764 ~ 764 (838)
+
T Consensus 164 A 164 (165)
T 3twr_A 164 A 164 (165)
T ss_dssp -
T ss_pred c
Confidence 4
No 79
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.94 E-value=3e-26 Score=207.45 Aligned_cols=152 Identities=29% Similarity=0.409 Sum_probs=122.0
Q ss_pred CcHHHHHHHcCCHHHHHHHHhC-CCCCCccCCCCChHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCcH
Q psy3308 609 VTPLHVASHYDHQNVALLLLDR-GASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHT 687 (838)
Q Consensus 609 ~~~l~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~ 687 (838)
.+||+.|+..|+.+++++|++. +.+++..+..|.||||. +..|+.+++++|+++|++++.++..|.||||+|+..|+.
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 81 (156)
T 1bd8_A 3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFL 81 (156)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred chHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcH
Confidence 4677778888888888777777 34777777778888888 777888888888888888888888888888888888888
Q ss_pred HHHHHHHhCCCCCCCCCCCCCcHhHHHHhcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHC
Q psy3308 688 DMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVEN 762 (838)
Q Consensus 688 ~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~i~~~L~~~~~~~~~~~~~g~t~l~~A~~~g~~~~v~~Ll~~ 762 (838)
+++++|+++|++++.++..|.||||+|+..|+.+++++|+++ ++++.++..|.|||++|+..|+.+++++|+++
T Consensus 82 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 82 DTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp HHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 888888888888888888888888888888888888888877 77888888888888888888888888888764
No 80
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.94 E-value=8e-27 Score=204.97 Aligned_cols=134 Identities=23% Similarity=0.284 Sum_probs=125.2
Q ss_pred CCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHhHHHHhcCCHHHHHHHHhCCCCCCCCCCC-CCc
Q psy3308 664 NAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKA-GFT 742 (838)
Q Consensus 664 ~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~i~~~L~~~~~~~~~~~~~-g~t 742 (838)
+++++..+..|.|||++|+..|+.+++++|+++|++++.++..|.||||+|+. |+.+++++|+++|++++.++.. |+|
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t 80 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTR 80 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBC
T ss_pred CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCC
Confidence 46778888899999999999999999999999999999999999999999999 9999999999999999999999 999
Q ss_pred HHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHhCcHHHHHHHHhCCCC
Q psy3308 743 PLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQ 798 (838)
Q Consensus 743 ~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ga~ 798 (838)
|||+|+..|+.+++++|+++|++++..|..|.|||++|++.++.+++++|+++|||
T Consensus 81 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 81 PVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999986
No 81
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.94 E-value=8.4e-28 Score=234.24 Aligned_cols=190 Identities=16% Similarity=0.220 Sum_probs=140.5
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcC
Q psy3308 606 KNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEG 685 (838)
Q Consensus 606 ~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~g~t~L~~A~~~g 685 (838)
..|.|||+.|+..++.++++.|+++|++++.. ..+.||||.|+..|+.+++++|++.|++++.++..|.||||+|+..|
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g 81 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAG 81 (239)
T ss_dssp -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHT
T ss_pred ccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence 45789999999999999999999999998854 67889999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhCCCCCCCCCCCCCcHhHHHHhcCCHHHHHHHHhCCCCCCCCCCCCC-cHHHHH--HHcCCHHHHHHHHHC
Q psy3308 686 HTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGF-TPLHIA--SHFGQLNMVRYLVEN 762 (838)
Q Consensus 686 ~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~i~~~L~~~~~~~~~~~~~g~-t~l~~A--~~~g~~~~v~~Ll~~ 762 (838)
+.++|++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|. ||||+| +..|+.+++++|+++
T Consensus 82 ~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~ 161 (239)
T 1ycs_B 82 HTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV 161 (239)
T ss_dssp CHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999988877 999999 788999999999999
Q ss_pred CCCCccC---------CCCCCcHHHHHHHhCcHHHHHHHHhCCCC
Q psy3308 763 GANVNAT---------TNLGYTPLHQASQQGRVLIIDLLLGAGAQ 798 (838)
Q Consensus 763 g~~~~~~---------~~~g~t~l~~A~~~~~~~~v~~Ll~~ga~ 798 (838)
|++++.. +..+.+++++|++.|. ++++|.+.+.+
T Consensus 162 ~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~~~~~ 204 (239)
T 1ycs_B 162 QEKMGIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHREDED 204 (239)
T ss_dssp HHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCCCTTS
T ss_pred hhcccccccceEEEEeccCCCCCCcccccCCC--EEEEEEecCCC
Confidence 9888776 5568899988888876 56666665554
No 82
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.93 E-value=2.3e-26 Score=207.51 Aligned_cols=140 Identities=21% Similarity=0.278 Sum_probs=110.1
Q ss_pred CCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHhHHHHhcCCHHHHHHHHhCCCCCCCCCCCCCc-HHHH
Q psy3308 668 NAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFT-PLHI 746 (838)
Q Consensus 668 ~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~i~~~L~~~~~~~~~~~~~g~t-~l~~ 746 (838)
+..+..|.|||++|+..|+.++|++|+++|++++..+..|.||||+|+ .|+.+++++|+++|++++.++..|+| |||+
T Consensus 6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~ 84 (156)
T 1bi7_B 6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHD 84 (156)
T ss_dssp ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHH
T ss_pred cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence 345567788888888888888888888888888888888888888874 88888889888888888888888888 9999
Q ss_pred HHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCCCCCccch
Q psy3308 747 ASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNLFCC 808 (838)
Q Consensus 747 A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~ 808 (838)
|+..|+.+++++|+++|++++.+|..|.||||+|++.|+.+++++|+++|++++.+|..|.|
T Consensus 85 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t 146 (156)
T 1bi7_B 85 AAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARID 146 (156)
T ss_dssp HHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC------------
T ss_pred HHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCc
Confidence 99999999999999999999999888999999999999999999999999999998888887
No 83
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.93 E-value=9.1e-27 Score=214.93 Aligned_cols=161 Identities=16% Similarity=0.161 Sum_probs=131.6
Q ss_pred CChHHHHHHHcCcHHHHHHHHhCCCCCCCCC-CCCCcHHHHHHHcCcH----HHHHHHHhCCCCCCCCCCCCCcHhHHHH
Q psy3308 641 GYTPLHIAAKKNQMDIATTLLEYNAKPNAES-KAGFTPLHLSAQEGHT----DMSSLLIEHGATVSHQAKNGLTPLHLCA 715 (838)
Q Consensus 641 ~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~-~~g~t~L~~A~~~g~~----~iv~~Ll~~g~~~~~~~~~~~t~l~~A~ 715 (838)
+.++|+.|++.|+++.++.+++.+. +..+ ..|+||||+|+..|+. +++++|+++|+++|.++..|.||||+|+
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~ 83 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLF 83 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSS--SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCc--ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence 3467888888888888888887654 3344 5678888888888764 5888888888888888888888888888
Q ss_pred hcCC------HHHHHHHHhCCCCCCCCCCCCC-cHHHHHHHcC-----CHHHHHHHHH-CCCCCccCCCCCCcHHHHHHH
Q psy3308 716 QEDK------VNVATITMFNGAEIDPVTKAGF-TPLHIASHFG-----QLNMVRYLVE-NGANVNATTNLGYTPLHQASQ 782 (838)
Q Consensus 716 ~~g~------~~i~~~L~~~~~~~~~~~~~g~-t~l~~A~~~g-----~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~ 782 (838)
..|+ .+++++|+++|+++|.+|..|+ ||||+|+..+ +.+++++|++ +|++++.+|..|+||||+|++
T Consensus 84 ~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~ 163 (186)
T 3t8k_A 84 QGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKR 163 (186)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHT
T ss_pred HcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHH
Confidence 8876 5788889999999998888888 8999888854 4579999999 899999999999999999999
Q ss_pred hCcHHHHHHHHhCCCCCCCCC
Q psy3308 783 QGRVLIIDLLLGAGAQPNATT 803 (838)
Q Consensus 783 ~~~~~~v~~Ll~~ga~~~~~~ 803 (838)
.|+.++|++|.+...+.+.++
T Consensus 164 ~~~~~~v~~L~~~~~~~~~~~ 184 (186)
T 3t8k_A 164 CQKPIALKMMEDYIKKYNLKE 184 (186)
T ss_dssp TTCHHHHHHHHHHHHHHTCCC
T ss_pred cCCHHHHHHHHHHHHHHhccc
Confidence 999999999998766555544
No 84
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.93 E-value=1.7e-25 Score=196.45 Aligned_cols=134 Identities=25% Similarity=0.374 Sum_probs=120.6
Q ss_pred CCCCCccCCCCChHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCC-CCc
Q psy3308 631 GASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKN-GLT 709 (838)
Q Consensus 631 g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~-~~t 709 (838)
+++++..+..|.||||.|+..|+.+++++|+++|++++.++..|+||||+|+. |+.+++++|+++|++++.++.. |.|
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t 80 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTR 80 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBC
T ss_pred CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCC
Confidence 45777888888999999999999999999999999999888889999999999 9999999999999999988888 899
Q ss_pred HhHHHHhcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCC
Q psy3308 710 PLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGAN 765 (838)
Q Consensus 710 ~l~~A~~~g~~~i~~~L~~~~~~~~~~~~~g~t~l~~A~~~g~~~~v~~Ll~~g~~ 765 (838)
|||+|+..|+.+++++|+++|++++.+|..|+|||++|+..|+.+++++|+++|+|
T Consensus 81 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 81 PVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999998875
No 85
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.92 E-value=1.1e-25 Score=203.18 Aligned_cols=144 Identities=24% Similarity=0.345 Sum_probs=114.9
Q ss_pred ccCCCCChHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCc-HhHHH
Q psy3308 636 AVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLT-PLHLC 714 (838)
Q Consensus 636 ~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t-~l~~A 714 (838)
..+..|.||||.|+..|+.+++++|+++|++++..+..|+||||+|+ .|+.+++++|+++|++++.++..|.| |||+|
T Consensus 7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A 85 (156)
T 1bi7_B 7 SSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDA 85 (156)
T ss_dssp ---CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHH
T ss_pred CCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHH
Confidence 44567889999999999999999999999999999999999999985 89999999999999999999999998 99999
Q ss_pred HhcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHH
Q psy3308 715 AQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQA 780 (838)
Q Consensus 715 ~~~g~~~i~~~L~~~~~~~~~~~~~g~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A 780 (838)
+..|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++..+..|.||.+.+
T Consensus 86 ~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 86 AREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP 151 (156)
T ss_dssp HHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred HHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence 999999999999999999999999999999999999999999999999999999999999888744
No 86
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.92 E-value=1.6e-24 Score=188.20 Aligned_cols=126 Identities=45% Similarity=0.740 Sum_probs=115.7
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHhHHHHhcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCC
Q psy3308 673 AGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQ 752 (838)
Q Consensus 673 ~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~i~~~L~~~~~~~~~~~~~g~t~l~~A~~~g~ 752 (838)
+|+|||+.|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 80 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence 37889999999999999999999988888888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCccCCCCCCcHHHHHHHhCcHHHHHHHHhCCCC
Q psy3308 753 LNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQ 798 (838)
Q Consensus 753 ~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ga~ 798 (838)
.+++++|+++|++++..|..|.|||++|++.|+.+++++|+++|||
T Consensus 81 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 81 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999986
No 87
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.92 E-value=1.7e-24 Score=190.08 Aligned_cols=126 Identities=29% Similarity=0.503 Sum_probs=110.4
Q ss_pred CCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHhHHHHhcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHc
Q psy3308 671 SKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHF 750 (838)
Q Consensus 671 ~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~i~~~L~~~~~~~~~~~~~g~t~l~~A~~~ 750 (838)
...+.|||++|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~ 90 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFI 90 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred cccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence 34467888888888888888888888888888888888888888888888888888888888888888899999999999
Q ss_pred CCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHhCcHHHHHHHHhCC
Q psy3308 751 GQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAG 796 (838)
Q Consensus 751 g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g 796 (838)
|+.+++++|+++|++++..|..|.|||++|++.|+.+++++|+++|
T Consensus 91 ~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 91 GHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred CCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999876
No 88
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.91 E-value=3.3e-25 Score=204.51 Aligned_cols=160 Identities=16% Similarity=0.125 Sum_probs=132.4
Q ss_pred CcHHHHHHHcCCHHHHHHHHhCCCCCCccC-CCCChHHHHHHHcCcH----HHHHHHHhCCCCCCCCCCCCCcHHHHHHH
Q psy3308 609 VTPLHVASHYDHQNVALLLLDRGASPHAVA-KNGYTPLHIAAKKNQM----DIATTLLEYNAKPNAESKAGFTPLHLSAQ 683 (838)
Q Consensus 609 ~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~~~t~L~~A~~~~~~----~iv~~Ll~~~~~~~~~~~~g~t~L~~A~~ 683 (838)
.++|+.|+..|+.+.++.++..+. +..+ ..|+||||+|+..|+. +++++|+++|++++.++..|+||||+|+.
T Consensus 7 ~~~l~~Aa~~g~~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~ 84 (186)
T 3t8k_A 7 YRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQ 84 (186)
T ss_dssp CSSHHHHHHHSCHHHHHHHHHHSS--SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHH
T ss_pred ccHHHHHHHcCCHHHHHHHHhcCc--ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Confidence 457788888888888887777654 3344 5688888888888864 58888999999998888888999999888
Q ss_pred cCc------HHHHHHHHhCCCCCCCCCCCCC-cHhHHHHhcC-----CHHHHHHHHh-CCCCCCCCCCCCCcHHHHHHHc
Q psy3308 684 EGH------TDMSSLLIEHGATVSHQAKNGL-TPLHLCAQED-----KVNVATITMF-NGAEIDPVTKAGFTPLHIASHF 750 (838)
Q Consensus 684 ~g~------~~iv~~Ll~~g~~~~~~~~~~~-t~l~~A~~~g-----~~~i~~~L~~-~~~~~~~~~~~g~t~l~~A~~~ 750 (838)
.|+ .+++++|+++|+++|.++..|. ||||+|+..+ +.+++++|++ +|++++.+|..|+||||+|+..
T Consensus 85 ~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~ 164 (186)
T 3t8k_A 85 GGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRC 164 (186)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTT
T ss_pred cCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHc
Confidence 876 6789999999999999999999 9999999844 4568999999 9999999999999999999999
Q ss_pred CCHHHHHHHHHCCCCCccCC
Q psy3308 751 GQLNMVRYLVENGANVNATT 770 (838)
Q Consensus 751 g~~~~v~~Ll~~g~~~~~~~ 770 (838)
|+.++|++|.++....+.++
T Consensus 165 ~~~~~v~~L~~~~~~~~~~~ 184 (186)
T 3t8k_A 165 QKPIALKMMEDYIKKYNLKE 184 (186)
T ss_dssp TCHHHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHHhccc
Confidence 99999999988755555544
No 89
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.91 E-value=1.6e-24 Score=190.77 Aligned_cols=135 Identities=21% Similarity=0.353 Sum_probs=114.1
Q ss_pred CCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHhHHHHhcCCHHHHHHHHhCCCCCCCCCCCCCcH
Q psy3308 664 NAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTP 743 (838)
Q Consensus 664 ~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~i~~~L~~~~~~~~~~~~~g~t~ 743 (838)
|+|+ .++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|+||
T Consensus 1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~ 79 (137)
T 3c5r_A 1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSP 79 (137)
T ss_dssp ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCH
T ss_pred CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCH
Confidence 4566 677888899999999999999999999999888888889999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCC
Q psy3308 744 LHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP 799 (838)
Q Consensus 744 l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ga~~ 799 (838)
||+|+..|+.+++++|+++|++++..|..|.|||++|+..+..+++++|.+++..+
T Consensus 80 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~s~ 135 (137)
T 3c5r_A 80 LHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESSS 135 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-------
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhccccccCC
Confidence 99999999999999999999999999999999999999999999999888876543
No 90
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.90 E-value=2.8e-23 Score=180.34 Aligned_cols=126 Identities=44% Similarity=0.732 Sum_probs=115.7
Q ss_pred CCChHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHhHHHHhcCC
Q psy3308 640 NGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDK 719 (838)
Q Consensus 640 ~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~ 719 (838)
+|.||||.|+..|+.+++++|+++|++++..+..|.|||++|+..|+.+++++|+++|++++.++..|.||||+|+..|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 80 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence 47899999999999999999999999998888899999999999999999999999999999899999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCC
Q psy3308 720 VNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGAN 765 (838)
Q Consensus 720 ~~i~~~L~~~~~~~~~~~~~g~t~l~~A~~~g~~~~v~~Ll~~g~~ 765 (838)
.+++++|+++|++++.++..|.|||++|+..|+.+++++|+++|++
T Consensus 81 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 81 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999998875
No 91
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.90 E-value=2.7e-23 Score=182.34 Aligned_cols=125 Identities=29% Similarity=0.406 Sum_probs=109.4
Q ss_pred CCCChHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHhHHHHhcC
Q psy3308 639 KNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQED 718 (838)
Q Consensus 639 ~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~g 718 (838)
..+.||||.|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus 12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~ 91 (136)
T 2jab_A 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIG 91 (136)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred ccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC
Confidence 34668888888888888888888888888888888888999988888889999888888888888888889999999999
Q ss_pred CHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCC
Q psy3308 719 KVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENG 763 (838)
Q Consensus 719 ~~~i~~~L~~~~~~~~~~~~~g~t~l~~A~~~g~~~~v~~Ll~~g 763 (838)
+.+++++|+++|++++..|..|+|||++|+..|+.+++++|+++|
T Consensus 92 ~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 92 HLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred CHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 999999999888888888888999999999999999999998875
No 92
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.89 E-value=2.6e-23 Score=182.97 Aligned_cols=132 Identities=27% Similarity=0.404 Sum_probs=116.8
Q ss_pred CCCcccCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcH
Q psy3308 85 GATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTP 164 (838)
Q Consensus 85 ~~~~~~~~~~~~t~l~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~Aa~~g~~~iv~~L~~~~~~~~~~~~~~~ta 164 (838)
|+|+ .+|..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus 1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~ 79 (137)
T 3c5r_A 1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSP 79 (137)
T ss_dssp ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCH
T ss_pred CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCH
Confidence 5666 678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCccCCCCCCccHHHHHHhCCcHHHHHHHHhCC
Q psy3308 165 LHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHG 217 (838)
Q Consensus 165 l~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~L~~~~ 217 (838)
||+|+..|+.+++++|++.|++++..+..|.||+++|+..++.+++++|.+++
T Consensus 80 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~ 132 (137)
T 3c5r_A 80 LHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE 132 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence 99999999999999999999999889999999999999989888888887654
No 93
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.88 E-value=6.7e-24 Score=197.10 Aligned_cols=140 Identities=25% Similarity=0.324 Sum_probs=128.6
Q ss_pred CCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccc-CCCCcHHHHHHH
Q psy3308 92 SLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKT-RDGLTPLHCAAR 170 (838)
Q Consensus 92 ~~~~~t~l~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~Aa~~g~~~iv~~L~~~~~~~~~~~-~~~~tal~~A~~ 170 (838)
+..|.||||+|+..|+.++|++|++ +++++..+..|.||||+|+..|+.++|++|+++|++++..+ ..|.||||+|+.
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~ 119 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 119 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence 3567899999999999999999999 99999999999999999999999999999999999999888 889999999999
Q ss_pred cCCHHHHHHHHHcCCCccCCCCCCccHHHHHHhCCcHHHHHHHHhCCCCCCcccCCCccHHHHHHhcCCHHHHHHHHHC
Q psy3308 171 SGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDR 249 (838)
Q Consensus 171 ~g~~~iv~~L~~~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~A~~~g~~~iv~~L~~~ 249 (838)
.|+.+++++|+++|++++..+..|.|||++|+..++. ....++|++|+..|+.+++++|.++
T Consensus 120 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~-----------------~~~~~~l~~a~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 120 YVRPEVVEALVELGADIEVEDERGLTALELAREILKT-----------------TPKGNPMQFGRRIGLEKVINVLEGQ 181 (183)
T ss_dssp TTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT-----------------CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred cCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC-----------------cccccHHHHHHHcCHHHHHHHHHHh
Confidence 9999999999999999999999999999999874322 2345899999999999999999865
No 94
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.88 E-value=1.8e-22 Score=187.43 Aligned_cols=140 Identities=28% Similarity=0.353 Sum_probs=122.9
Q ss_pred CCCCChHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCC-CCCCcHhHHHHh
Q psy3308 638 AKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQA-KNGLTPLHLCAQ 716 (838)
Q Consensus 638 ~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~-~~~~t~l~~A~~ 716 (838)
+..|.||||.|+..|+.+++++|++ |.+++..+..|+||||+|+..|+.+++++|+++|++++.++ ..|.||||+|+.
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~ 119 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 119 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence 3467789999999999999999999 88999999999999999999999999999999999998887 889999999999
Q ss_pred cCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHhCcHHHHHHHHhC
Q psy3308 717 EDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGA 795 (838)
Q Consensus 717 ~g~~~i~~~L~~~~~~~~~~~~~g~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 795 (838)
.|+.+++++|+++|++++.+|..|+|||++|+..++. ..+.+||++|++.|+.+++++|.++
T Consensus 120 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~-----------------~~~~~~l~~a~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 120 YVRPEVVEALVELGADIEVEDERGLTALELAREILKT-----------------TPKGNPMQFGRRIGLEKVINVLEGQ 181 (183)
T ss_dssp TTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT-----------------CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred cCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC-----------------cccccHHHHHHHcCHHHHHHHHHHh
Confidence 9999999999999999999999999999999874422 3457899999999999999999875
No 95
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.88 E-value=1.1e-22 Score=198.10 Aligned_cols=142 Identities=28% Similarity=0.347 Sum_probs=127.5
Q ss_pred CCCChHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCC-CCCCcHhHHHHhc
Q psy3308 639 KNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQA-KNGLTPLHLCAQE 717 (838)
Q Consensus 639 ~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~-~~~~t~l~~A~~~ 717 (838)
..|.||||.|+..|+.+++++|++ |++++.++..|+||||+|+..|+.++|++|+++|++++.++ ..|.||||+|+..
T Consensus 43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~ 121 (244)
T 3ui2_A 43 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY 121 (244)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHT
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHc
Confidence 457899999999999999999999 99999999999999999999999999999999999998888 7899999999999
Q ss_pred CCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHhCcHHHHHHHHhCCC
Q psy3308 718 DKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGA 797 (838)
Q Consensus 718 g~~~i~~~L~~~~~~~~~~~~~g~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ga 797 (838)
|+.+++++|+++|++++.+|..|+||||+|+..++ ...+.|||++|++.|+.+++++|++++.
T Consensus 122 g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~-----------------~~~~~~~l~~a~~~g~~~iv~~L~~~~~ 184 (244)
T 3ui2_A 122 VRPEVVEALVELGADIEVEDERGLTALELAREILK-----------------TTPKGNPMQFGRRIGLEKVINVLEGQVF 184 (244)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHT-----------------TCCCSSHHHHHHHHHHHHHHHHHHHHHE
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHh-----------------ccCCCCHHHHHHHcChHHHHHHHHHhcc
Confidence 99999999999999999999999999999986322 2457899999999999999999998755
Q ss_pred C
Q psy3308 798 Q 798 (838)
Q Consensus 798 ~ 798 (838)
+
T Consensus 185 ~ 185 (244)
T 3ui2_A 185 E 185 (244)
T ss_dssp E
T ss_pred c
Confidence 4
No 96
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.87 E-value=6.8e-23 Score=197.46 Aligned_cols=136 Identities=18% Similarity=0.210 Sum_probs=106.2
Q ss_pred CCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHhHHHHhcCCHHHHHHHHhC-CCCCCCCCCCCCcHHHHHHH
Q psy3308 671 SKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFN-GAEIDPVTKAGFTPLHIASH 749 (838)
Q Consensus 671 ~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~i~~~L~~~-~~~~~~~~~~g~t~l~~A~~ 749 (838)
+..|.||||+|+..|+.++|++|++.|++++.++..|.||||+|+..|+.+++++|++. |++++.+|..|+||||+|+.
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~ 149 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAW 149 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHH
T ss_pred ccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHH
Confidence 44567888888888888888888888888888888888888888888888888888888 88888899999999999999
Q ss_pred cCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCCCCCcc
Q psy3308 750 FGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNLF 806 (838)
Q Consensus 750 ~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~ 806 (838)
.|+.+++++|+++|++++..|..|.|||++|+..++.++++.|+++|++.+.+|..+
T Consensus 150 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~ 206 (222)
T 3ehr_A 150 KGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED 206 (222)
T ss_dssp HTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC----------------
T ss_pred cCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhh
Confidence 999999999999999999999999999999999999999999999999888777554
No 97
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.87 E-value=2.3e-22 Score=173.01 Aligned_cols=115 Identities=22% Similarity=0.325 Sum_probs=84.0
Q ss_pred CCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHhHHHHhcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcC
Q psy3308 672 KAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFG 751 (838)
Q Consensus 672 ~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~i~~~L~~~~~~~~~~~~~g~t~l~~A~~~g 751 (838)
..|.|||++|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|
T Consensus 5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~ 84 (123)
T 3aaa_C 5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEG 84 (123)
T ss_dssp --CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC
Confidence 34567777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHCCCCCccCCCCCCcHHHHHHHhCcH
Q psy3308 752 QLNMVRYLVENGANVNATTNLGYTPLHQASQQGRV 786 (838)
Q Consensus 752 ~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~ 786 (838)
+.+++++|+++|++++..|..|.|||++|...+..
T Consensus 85 ~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~ 119 (123)
T 3aaa_C 85 HVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIK 119 (123)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHH
T ss_pred CHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHH
Confidence 77777777777777777777777777777443333
No 98
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.87 E-value=7.2e-22 Score=197.92 Aligned_cols=137 Identities=19% Similarity=0.164 Sum_probs=69.9
Q ss_pred hHHHHHHHcCcHHHHHHHHhCCCCCCC------CCCCCCcHHHHHHHc---CcHHHHHHHHhCCCCCCCCCCCCCcHhHH
Q psy3308 643 TPLHIAAKKNQMDIATTLLEYNAKPNA------ESKAGFTPLHLSAQE---GHTDMSSLLIEHGATVSHQAKNGLTPLHL 713 (838)
Q Consensus 643 t~L~~A~~~~~~~iv~~Ll~~~~~~~~------~~~~g~t~L~~A~~~---g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~ 713 (838)
++|+.|+..|+++.++.|++.|++++. .+..|.||||+|+.. |+.+++++|+++|++++.++..|.||||+
T Consensus 153 ~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~ 232 (301)
T 2b0o_E 153 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHY 232 (301)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHH
T ss_pred HHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 455666666666666666655555554 344555555555554 45555555555555555555555555555
Q ss_pred HHhcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHhCc
Q psy3308 714 CAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGR 785 (838)
Q Consensus 714 A~~~g~~~i~~~L~~~~~~~~~~~~~g~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 785 (838)
|+..|+.+++++|+++|++++.+|..|+|||++|+..|+.+++++|+++|++ .|.||||+|++.|+
T Consensus 233 A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~ 298 (301)
T 2b0o_E 233 AALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVI 298 (301)
T ss_dssp HHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC-------
T ss_pred HHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCC
Confidence 5555555555555555555555555555555555555555555555554443 24455555554443
No 99
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.86 E-value=5.6e-22 Score=198.71 Aligned_cols=139 Identities=19% Similarity=0.160 Sum_probs=125.3
Q ss_pred CCcHHHHHHHcCcHHHHHHHHhCCCCCCC------CCCCCCcHhHHHHhc---CCHHHHHHHHhCCCCCCCCCCCCCcHH
Q psy3308 674 GFTPLHLSAQEGHTDMSSLLIEHGATVSH------QAKNGLTPLHLCAQE---DKVNVATITMFNGAEIDPVTKAGFTPL 744 (838)
Q Consensus 674 g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~------~~~~~~t~l~~A~~~---g~~~i~~~L~~~~~~~~~~~~~g~t~l 744 (838)
..++|+.|+..|+.+.|++|++.|++++. .+..|.||||+|+.. |+.+++++|+++|++++.+|..|+|||
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpL 230 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL 230 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHH
T ss_pred hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 34789999999999999999999999998 688999999999997 899999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCCCCCccch-HHHHHHcCCc
Q psy3308 745 HIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNLFCC-ATILVKNGAE 818 (838)
Q Consensus 745 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~-~~~~~~~~~~ 818 (838)
|+|+..|+.++|++|+++|++++.+|..|.|||++|+..|+.+++++|+++|++ .|.| +++|+++|+.
T Consensus 231 h~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 231 HYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVIS 299 (301)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence 999999999999999999999999999999999999999999999999999986 5778 9999999875
No 100
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.86 E-value=3e-21 Score=191.15 Aligned_cols=126 Identities=18% Similarity=0.188 Sum_probs=107.7
Q ss_pred cHHHHHHHcCcHHHHHHHHhCCCCC------CCCCCCCCcHhHHHHhc---CCHHHHHHHHhCCCCCCCCCCCCCcHHHH
Q psy3308 676 TPLHLSAQEGHTDMSSLLIEHGATV------SHQAKNGLTPLHLCAQE---DKVNVATITMFNGAEIDPVTKAGFTPLHI 746 (838)
Q Consensus 676 t~L~~A~~~g~~~iv~~Ll~~g~~~------~~~~~~~~t~l~~A~~~---g~~~i~~~L~~~~~~~~~~~~~g~t~l~~ 746 (838)
++|+.|+..|+.+.++.+++.|+++ +..+..|.||||+|+.. |+.+++++|+++|+++|.+|..|+||||+
T Consensus 132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~ 211 (278)
T 1dcq_A 132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHY 211 (278)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHH
T ss_pred hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHH
Confidence 5677777777777777777777773 34467788999999988 88899999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCC
Q psy3308 747 ASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNA 801 (838)
Q Consensus 747 A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ga~~~~ 801 (838)
|+..|+.++|++|+++|++++.+|..|.||||+|++.|+.+++++|+++|++...
T Consensus 212 A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~ 266 (278)
T 1dcq_A 212 CCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFN 266 (278)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCCC
T ss_pred HHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence 9999999999999999999999999999999999999999999999999886543
No 101
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.86 E-value=1.5e-21 Score=167.86 Aligned_cols=118 Identities=26% Similarity=0.377 Sum_probs=103.1
Q ss_pred CCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcHHHHHHHc
Q psy3308 92 SLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARS 171 (838)
Q Consensus 92 ~~~~~t~l~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~Aa~~g~~~iv~~L~~~~~~~~~~~~~~~tal~~A~~~ 171 (838)
+..|.||||+|+..|+.++|++|++++.+++..+..|.||||+||..|+.++|++|+++|++++..+..|.||||+|+..
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~ 83 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE 83 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHcCCCccCCCCCCccHHHHHHhCCcHHH
Q psy3308 172 GHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAA 209 (838)
Q Consensus 172 g~~~iv~~L~~~~~~~~~~~~~~~~~l~~A~~~g~~~~ 209 (838)
|+.++|++|+++|++++..+..|.||+++|...+..++
T Consensus 84 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~l 121 (123)
T 3aaa_C 84 GHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKAL 121 (123)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHHHH
Confidence 99999999999999988888899999998855444444
No 102
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.85 E-value=2.3e-21 Score=188.91 Aligned_cols=140 Identities=24% Similarity=0.275 Sum_probs=110.6
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHcCcHHHHHHHHhCCCCCCCCC-CCCCcHHHHHHHcC
Q psy3308 607 NGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAES-KAGFTPLHLSAQEG 685 (838)
Q Consensus 607 ~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~-~~g~t~L~~A~~~g 685 (838)
.|.||||.|+..|+.+++++|++ |++++..+..|.||||+|+..|+.++|++|+++|++++..+ ..|+||||+|+..|
T Consensus 44 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g 122 (244)
T 3ui2_A 44 EYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV 122 (244)
T ss_dssp HHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcC
Confidence 45678888888888888888887 77788777788888888888888888888888888887777 66888888888888
Q ss_pred cHHHHHHHHhCCCCCCCCCCCCCcHhHHHHhcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCC
Q psy3308 686 HTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGA 764 (838)
Q Consensus 686 ~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~i~~~L~~~~~~~~~~~~~g~t~l~~A~~~g~~~~v~~Ll~~g~ 764 (838)
+.++|++|+++|++++.++..|.||||+|+..+ ....+.|||++|+..|+.+++++|++++.
T Consensus 123 ~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~-----------------~~~~~~~~l~~a~~~g~~~iv~~L~~~~~ 184 (244)
T 3ui2_A 123 RPEVVEALVELGADIEVEDERGLTALELAREIL-----------------KTTPKGNPMQFGRRIGLEKVINVLEGQVF 184 (244)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHH-----------------TTCCCSSHHHHHHHHHHHHHHHHHHHHHE
T ss_pred CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHH-----------------hccCCCCHHHHHHHcChHHHHHHHHHhcc
Confidence 888888888888888888888888888887532 12456788888888888888888888643
No 103
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.85 E-value=5.9e-21 Score=154.43 Aligned_cols=93 Identities=44% Similarity=0.722 Sum_probs=83.3
Q ss_pred CCCcHhHHHHhcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHhCc
Q psy3308 706 NGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGR 785 (838)
Q Consensus 706 ~~~t~l~~A~~~g~~~i~~~L~~~~~~~~~~~~~g~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 785 (838)
+|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|++.|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~ 80 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence 37788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCC
Q psy3308 786 VLIIDLLLGAGAQ 798 (838)
Q Consensus 786 ~~~v~~Ll~~ga~ 798 (838)
.+++++|+++||+
T Consensus 81 ~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 81 LEVVKLLLEAGAY 93 (93)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCC
Confidence 9999999999885
No 104
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.85 E-value=1e-21 Score=189.26 Aligned_cols=136 Identities=22% Similarity=0.258 Sum_probs=107.7
Q ss_pred CCCCChHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhC-CCCCCCCCCCCCcHhHHHHh
Q psy3308 638 AKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEH-GATVSHQAKNGLTPLHLCAQ 716 (838)
Q Consensus 638 ~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~-g~~~~~~~~~~~t~l~~A~~ 716 (838)
+..|.||||.|+..|+.+++++|++.|++++.++..|+||||+|+..|+.++|++|+++ |++++.++..|.||||+|+.
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~ 149 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAW 149 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHH
T ss_pred ccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHH
Confidence 45678899999999999999999999988888888899999999999999999999988 88898888899999999999
Q ss_pred cCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccCCCCC
Q psy3308 717 EDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 773 (838)
Q Consensus 717 ~g~~~i~~~L~~~~~~~~~~~~~g~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g 773 (838)
.|+.+++++|+++|++++.++..|+|||++|+..|+.++++.|++.|+..+..+.+|
T Consensus 150 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~ 206 (222)
T 3ehr_A 150 KGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED 206 (222)
T ss_dssp HTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC----------------
T ss_pred cCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhh
Confidence 999999999999999999999999999999999999999999999888877766544
No 105
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.84 E-value=1.3e-20 Score=204.27 Aligned_cols=126 Identities=19% Similarity=0.198 Sum_probs=81.4
Q ss_pred hHHHHHHHcCcHHHHHHHHhCCCCCCCC------CCCCCcHHHHHHH---cCcHHHHHHHHhCCCCCCCCCCCCCcHhHH
Q psy3308 643 TPLHIAAKKNQMDIATTLLEYNAKPNAE------SKAGFTPLHLSAQ---EGHTDMSSLLIEHGATVSHQAKNGLTPLHL 713 (838)
Q Consensus 643 t~L~~A~~~~~~~iv~~Ll~~~~~~~~~------~~~g~t~L~~A~~---~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~ 713 (838)
+.|+.|+..|+.++|+.|++.|++++.. +..|.||||+|+. .|+.++|++|+++|+++|.++..|.||||+
T Consensus 134 ~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh~ 213 (497)
T 3lvq_E 134 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHY 213 (497)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHHH
T ss_pred HHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHHH
Confidence 5677777777777777777777666655 5566666666644 666666666666666666666666666666
Q ss_pred HHhcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcc
Q psy3308 714 CAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNA 768 (838)
Q Consensus 714 A~~~g~~~i~~~L~~~~~~~~~~~~~g~t~l~~A~~~g~~~~v~~Ll~~g~~~~~ 768 (838)
|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.
T Consensus 214 A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~ 268 (497)
T 3lvq_E 214 AALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFA 268 (497)
T ss_dssp HTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC----
T ss_pred HHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCC
Confidence 6666666666666666666666666666666666666666666666666666655
No 106
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.83 E-value=4.4e-20 Score=182.77 Aligned_cols=192 Identities=19% Similarity=0.195 Sum_probs=147.4
Q ss_pred cCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCC-CCCCcHHHHHHHcCCHHHHHHHHhCCCC-CCccCCCCChHHHHH
Q psy3308 571 TTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQG-KNGVTPLHVASHYDHQNVALLLLDRGAS-PHAVAKNGYTPLHIA 648 (838)
Q Consensus 571 ~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~-~~~~~~l~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~~~t~L~~A 648 (838)
.|.++.+.++.+...|+..+.+++...-....... ..+.... .....-..+|+...... .........++|+.|
T Consensus 62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~----~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a 137 (278)
T 1dcq_A 62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMI----ARKDYITAKYMERRYARKKHADTAAKLHSLCEA 137 (278)
T ss_dssp TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHH----HHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHH----HHHHHHHHHHHHhhcccccccccchhhhhhhhH
Confidence 46677889999999999888777654322111101 1111111 11111122333322111 111112234789999
Q ss_pred HHcCcHHHHHHHHhCCCCCC------CCCCCCCcHHHHHHHc---CcHHHHHHHHhCCCCCCCCCCCCCcHhHHHHhcCC
Q psy3308 649 AKKNQMDIATTLLEYNAKPN------AESKAGFTPLHLSAQE---GHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDK 719 (838)
Q Consensus 649 ~~~~~~~iv~~Ll~~~~~~~------~~~~~g~t~L~~A~~~---g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~ 719 (838)
+..|+.+.++.+++.|.+++ ..+..|.||||+|+.. |+.+++++|+++|++++.++..|.||||+|+..|+
T Consensus 138 ~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~ 217 (278)
T 1dcq_A 138 VKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDN 217 (278)
T ss_dssp HHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTC
T ss_pred hhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCC
Confidence 99999999999999999844 4478899999999999 89999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC
Q psy3308 720 VNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANV 766 (838)
Q Consensus 720 ~~i~~~L~~~~~~~~~~~~~g~t~l~~A~~~g~~~~v~~Ll~~g~~~ 766 (838)
.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++.
T Consensus 218 ~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 218 AECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR 264 (278)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999998863
No 107
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.83 E-value=1.9e-20 Score=191.27 Aligned_cols=121 Identities=21% Similarity=0.252 Sum_probs=61.0
Q ss_pred ChHHHHHHHc-CcHHHHHHHHhCCCCCCCCC--CCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHhHHHHhcC
Q psy3308 642 YTPLHIAAKK-NQMDIATTLLEYNAKPNAES--KAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQED 718 (838)
Q Consensus 642 ~t~L~~A~~~-~~~~iv~~Ll~~~~~~~~~~--~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~g 718 (838)
.|+||.|+.. |+++++++|++.|++++..+ ..|.||||+|+..|+.++|++|+++|++++..+..|.||||+|+..|
T Consensus 200 ~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g 279 (368)
T 3jue_A 200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279 (368)
T ss_dssp HHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred CcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence 3455555555 55555555555555555444 44455555555555555555555555555544444445555444444
Q ss_pred CHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHC
Q psy3308 719 KVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVEN 762 (838)
Q Consensus 719 ~~~i~~~L~~~~~~~~~~~~~g~t~l~~A~~~g~~~~v~~Ll~~ 762 (838)
+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++.
T Consensus 280 ~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~ 323 (368)
T 3jue_A 280 HTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLA 323 (368)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence 44444444444444444444444444444444444444444443
No 108
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.82 E-value=5.9e-20 Score=148.52 Aligned_cols=93 Identities=44% Similarity=0.717 Sum_probs=80.4
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcHHHHHHHcCC
Q psy3308 94 NGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGH 173 (838)
Q Consensus 94 ~~~t~l~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~Aa~~g~~~iv~~L~~~~~~~~~~~~~~~tal~~A~~~g~ 173 (838)
+|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.++|++|+++|++++.++..|.|||++|+..|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~ 80 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence 36788999999999999999999888888888888899999999999999999999888888888888899999999899
Q ss_pred HHHHHHHHHcCCC
Q psy3308 174 DNVIDILIEKGAA 186 (838)
Q Consensus 174 ~~iv~~L~~~~~~ 186 (838)
.+++++|++.|++
T Consensus 81 ~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 81 LEVVKLLLEAGAY 93 (93)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCC
Confidence 9999988888753
No 109
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.82 E-value=5.5e-20 Score=187.92 Aligned_cols=144 Identities=22% Similarity=0.234 Sum_probs=100.8
Q ss_pred CCCCcHHHHHHHc-CcHHHHHHHHhCCCCCCCCC--CCCCcHhHHHHhcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHH
Q psy3308 672 KAGFTPLHLSAQE-GHTDMSSLLIEHGATVSHQA--KNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIAS 748 (838)
Q Consensus 672 ~~g~t~L~~A~~~-g~~~iv~~Ll~~g~~~~~~~--~~~~t~l~~A~~~g~~~i~~~L~~~~~~~~~~~~~g~t~l~~A~ 748 (838)
..+.|+|+.|+.. |+.++|++|+++|++++..+ ..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus 197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~ 276 (368)
T 3jue_A 197 LHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHAT 276 (368)
T ss_dssp CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence 3455788888887 88888888888888888777 67888888888888888888888888888888888888888888
Q ss_pred HcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHhCcHHHHHHHHhCC---CCCCCCCCccch-HHHHHHc
Q psy3308 749 HFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAG---AQPNATTNLFCC-ATILVKN 815 (838)
Q Consensus 749 ~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~g---a~~~~~~~~~~~-~~~~~~~ 815 (838)
..|+.+++++|+++|++++..|..|.|||++|+..|+.+++++|++.| ++....+..+.| +.++...
T Consensus 277 ~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~ 347 (368)
T 3jue_A 277 ILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF 347 (368)
T ss_dssp HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred HcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence 888888888888888888888888888888888888888888888654 333344555556 5555443
No 110
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.81 E-value=1.1e-19 Score=196.90 Aligned_cols=134 Identities=19% Similarity=0.196 Sum_probs=112.6
Q ss_pred CcHHHHHHHcCCHHHHHHHHhCCCCCCcc------CCCCChHHHHHHH---cCcHHHHHHHHhCCCCCCCCCCCCCcHHH
Q psy3308 609 VTPLHVASHYDHQNVALLLLDRGASPHAV------AKNGYTPLHIAAK---KNQMDIATTLLEYNAKPNAESKAGFTPLH 679 (838)
Q Consensus 609 ~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~------~~~~~t~L~~A~~---~~~~~iv~~Ll~~~~~~~~~~~~g~t~L~ 679 (838)
.+.|+.|+..|+.++++.|++.|++++.. +..|.||||+|+. .|+.+++++|+++|++++.+|..|+||||
T Consensus 133 ~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh 212 (497)
T 3lvq_E 133 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALH 212 (497)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHH
T ss_pred HHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHH
Confidence 36799999999999999999999998877 7789999999966 88999999999999999999999999999
Q ss_pred HHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHhHHHHhcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHH
Q psy3308 680 LSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIAS 748 (838)
Q Consensus 680 ~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~i~~~L~~~~~~~~~~~~~g~t~l~~A~ 748 (838)
+|+..|+.++|++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++. +|+|.+.
T Consensus 213 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~------~~~h~~~ 275 (497)
T 3lvq_E 213 YAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFA------FPLHVDY 275 (497)
T ss_dssp HHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC-----------------
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCC------Ccceeec
Confidence 99999999999999999999999999999999999999999999999999998865 4566544
No 111
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.81 E-value=2.9e-20 Score=157.65 Aligned_cols=106 Identities=35% Similarity=0.494 Sum_probs=62.0
Q ss_pred CCCCCCcHhHHHHhcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHH
Q psy3308 703 QAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQ 782 (838)
Q Consensus 703 ~~~~~~t~l~~A~~~g~~~i~~~L~~~~~~~~~~~~~g~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 782 (838)
++..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..|..|.|||++|++
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~ 84 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKK 84 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHT
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence 34455555555555555555555555555555555555666666666666666666666666666665556666666666
Q ss_pred hCcHHHHHHHHhCCCCCCCCCCccch
Q psy3308 783 QGRVLIIDLLLGAGAQPNATTNLFCC 808 (838)
Q Consensus 783 ~~~~~~v~~Ll~~ga~~~~~~~~~~~ 808 (838)
.|+.+++++|+++|++++.++..|.+
T Consensus 85 ~~~~~~~~~Ll~~ga~~n~~~~~~~~ 110 (115)
T 2l6b_A 85 NGHHEIVKLLDAKGADVNARSWGSSH 110 (115)
T ss_dssp TTCHHHHHHHHTTSSSHHHHSCCCC-
T ss_pred CCCHHHHHHHHHcCCCCCcCCccccc
Confidence 66666666666666666555555543
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.80 E-value=1.1e-19 Score=153.92 Aligned_cols=109 Identities=35% Similarity=0.530 Sum_probs=96.3
Q ss_pred CCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHhHHHHhcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHH
Q psy3308 669 AESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIAS 748 (838)
Q Consensus 669 ~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~i~~~L~~~~~~~~~~~~~g~t~l~~A~ 748 (838)
.+|..|+|||++|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|+|||++|+
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~ 83 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAK 83 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence 45778889999999999999999999999999888889999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHCCCCCccCCCCCCcHH
Q psy3308 749 HFGQLNMVRYLVENGANVNATTNLGYTPL 777 (838)
Q Consensus 749 ~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l 777 (838)
..|+.+++++|+++|+++|..+..|.+|-
T Consensus 84 ~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 84 KNGHHEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp TTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred HCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence 99999999999999999999988888763
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.71 E-value=3.4e-17 Score=136.73 Aligned_cols=92 Identities=32% Similarity=0.456 Sum_probs=80.7
Q ss_pred CCCCCCCCcHhHHHHhcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHH
Q psy3308 701 SHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQA 780 (838)
Q Consensus 701 ~~~~~~~~t~l~~A~~~g~~~i~~~L~~~~~~~~~~~~~g~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A 780 (838)
...+..|.|+||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..|..|+|||++|
T Consensus 18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A 97 (110)
T 2zgd_A 18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDIS 97 (110)
T ss_dssp ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred cccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHH
Confidence 34567788999999999999999999999999998999999999999999999999999999999999999999999999
Q ss_pred HHhCcHHHHHHH
Q psy3308 781 SQQGRVLIIDLL 792 (838)
Q Consensus 781 ~~~~~~~~v~~L 792 (838)
++.|+.+++++|
T Consensus 98 ~~~~~~~~~~~L 109 (110)
T 2zgd_A 98 IDNGNEDLAEIL 109 (110)
T ss_dssp HHHTCHHHHHHH
T ss_pred HHcCCHHHHHHh
Confidence 999999999887
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.70 E-value=5.1e-17 Score=135.71 Aligned_cols=92 Identities=27% Similarity=0.456 Sum_probs=83.3
Q ss_pred ccCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcHHHHH
Q psy3308 89 NVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCA 168 (838)
Q Consensus 89 ~~~~~~~~t~l~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~Aa~~g~~~iv~~L~~~~~~~~~~~~~~~tal~~A 168 (838)
...+.+|.|+||+|+..|+.++|++|+++|++++..+..|.||||+||..|+.++|++|+++|++++..+..|.|||++|
T Consensus 18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A 97 (110)
T 2zgd_A 18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDIS 97 (110)
T ss_dssp ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred cccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHH
Q psy3308 169 ARSGHDNVIDIL 180 (838)
Q Consensus 169 ~~~g~~~iv~~L 180 (838)
+..|+.+++++|
T Consensus 98 ~~~~~~~~~~~L 109 (110)
T 2zgd_A 98 IDNGNEDLAEIL 109 (110)
T ss_dssp HHHTCHHHHHHH
T ss_pred HHcCCHHHHHHh
Confidence 999999999987
No 115
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=58.61 E-value=21 Score=37.76 Aligned_cols=99 Identities=10% Similarity=0.017 Sum_probs=43.4
Q ss_pred HHHHHHHHcCCCCccccCCCCcHHHHHHHcCCHHHHHHHH----HcCCCccCCCCCCccH-HHHHHhCCcHHHHHH----
Q psy3308 142 AMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILI----EKGAALYSKTKNGLAP-LHMASQGDHEAATRV---- 212 (838)
Q Consensus 142 ~iv~~L~~~~~~~~~~~~~~~tal~~A~~~g~~~iv~~L~----~~~~~~~~~~~~~~~~-l~~A~~~g~~~~v~~---- 212 (838)
++.+-+.+.|..++... ..+.+...++.|+.+-+.-++ +.|..+ +...+++ +...++.|..+-+.-
T Consensus 91 ~lf~~M~~~G~~Pd~~t--yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P---d~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 91 DIFKQMIVDKVVPNEAT--FTNGARLAVAKDDPEMAFDMVKQMKAFGIQP---RLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHTTCCCCHHH--HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---ccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 45555566666553322 123445566677765433333 344332 1222223 333355555543333
Q ss_pred HHhCCCCCCcccCCCccHHHHHHhcCCHHHHHHHH
Q psy3308 213 LIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLL 247 (838)
Q Consensus 213 L~~~~~~~~~~~~~~~~~l~~A~~~g~~~iv~~L~ 247 (838)
+.+.|..++..+ ..+.+...+..|+.+-+..++
T Consensus 166 M~~~G~~Pd~~t--y~~Li~~~~~~g~~d~A~~ll 198 (501)
T 4g26_A 166 MVESEVVPEEPE--LAALLKVSMDTKNADKVYKTL 198 (501)
T ss_dssp HHHTTCCCCHHH--HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhcCCCCCHHH--HHHHHHHHhhCCCHHHHHHHH
Confidence 234455444322 123344445566655444443
No 116
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=47.84 E-value=25 Score=37.12 Aligned_cols=100 Identities=15% Similarity=0.181 Sum_probs=41.9
Q ss_pred HHHHHHhCCCCCCcccCCCccHHHHHHhcCCHHHHHHHH----HCCCCccccccCCCchHH-HHHhhCCccccccChHHH
Q psy3308 209 ATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLL----DRKADPNARALNGFTPLH-IACKKNRYKSSHCNHVWV 283 (838)
Q Consensus 209 ~v~~L~~~~~~~~~~~~~~~~~l~~A~~~g~~~iv~~L~----~~~~~~~~~~~~~~~~l~-~a~~~~~~~~~~~~~~~i 283 (838)
+.+-+...|..+|..+ ..+.+...+..|+++-+..++ +.|..|+.. .++++. ..+..|..+ .-.++
T Consensus 92 lf~~M~~~G~~Pd~~t--yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~---tyn~lI~~~~~~g~~~----~A~~l 162 (501)
T 4g26_A 92 IFKQMIVDKVVPNEAT--FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLR---SYGPALFGFCRKGDAD----KAYEV 162 (501)
T ss_dssp HHHHHHHTTCCCCHHH--HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH---HHHHHHHHHHHTTCHH----HHHHH
T ss_pred HHHHHHHhCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc---eehHHHHHHHHCCCHH----HHHHH
Confidence 4444455555544322 123444455666655444333 334444332 122222 233333322 13344
Q ss_pred HHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHH
Q psy3308 284 AKTLLDRKADPNARALNGFTPLHIACKKNRYKVVEL 319 (838)
Q Consensus 284 ~~~Ll~~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~ 319 (838)
++.+.+.|..|+.... .+.+...++.|+.+-+..
T Consensus 163 ~~~M~~~G~~Pd~~ty--~~Li~~~~~~g~~d~A~~ 196 (501)
T 4g26_A 163 DAHMVESEVVPEEPEL--AALLKVSMDTKNADKVYK 196 (501)
T ss_dssp HHHHHHTTCCCCHHHH--HHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhcCCCCCHHHH--HHHHHHHhhCCCHHHHHH
Confidence 5555555555543221 123333445555544333
No 117
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=40.70 E-value=1.4e+02 Score=25.79 Aligned_cols=73 Identities=11% Similarity=0.089 Sum_probs=40.3
Q ss_pred cHHhHHHhcCCHHHHHHHHhccccccchhhcccCcchhhhccchhhhhcCcHHHHHHHHHCCCCcccCCCCCCcHHHHHH
Q psy3308 24 PALHIAAKKDDCKAAALLLEVSFSNTKLEVSLSNTKLEVSLSNTKFEATGQEEVAKILVDNGATINVQSLNGFTPLYMAA 103 (838)
Q Consensus 24 ~al~~Aa~~g~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~l~~~~~~~~~~~~~~~t~l~~A~ 103 (838)
+-|..|...|++++..-+.+ ...+...|..+. ..|-..|++++++...++--|+. ..+....
T Consensus 10 ~rF~LAL~lg~l~~A~e~a~----------~l~~~~~Wk~Lg-~~AL~~gn~~lAe~cy~~~~D~~-------~L~~Ly~ 71 (177)
T 3mkq_B 10 IRFDLALEYGNLDAALDEAK----------KLNDSITWERLI-QEALAQGNASLAEMIYQTQHSFD-------KLSFLYL 71 (177)
T ss_dssp HHHHHHHHTTCHHHHHHHHH----------HHCCHHHHHHHH-HHHHHTTCHHHHHHHHHHTTCHH-------HHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHH----------HhCCHHHHHHHH-HHHHHcCChHHHHHHHHHhCCHH-------HHHHHHH
Confidence 45888889999988766654 112222333332 34556677777776666533322 2344444
Q ss_pred HcCcHHHHHHH
Q psy3308 104 QENHDGVVRYL 114 (838)
Q Consensus 104 ~~g~~~~v~~L 114 (838)
..|+.+-++.+
T Consensus 72 ~tg~~e~L~kl 82 (177)
T 3mkq_B 72 VTGDVNKLSKM 82 (177)
T ss_dssp HHTCHHHHHHH
T ss_pred HhCCHHHHHHH
Confidence 45555555554
No 118
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=38.16 E-value=24 Score=21.10 Aligned_cols=16 Identities=25% Similarity=0.291 Sum_probs=11.0
Q ss_pred HHHHHHcCCHHHHHHH
Q psy3308 132 LHVACKWGKVAMVELL 147 (838)
Q Consensus 132 l~~Aa~~g~~~iv~~L 147 (838)
+..||..|+.+.|+.|
T Consensus 17 iyvA~seGd~etv~~L 32 (40)
T 1gp8_A 17 MDAAASKGDVETYRKL 32 (40)
T ss_dssp HHHHHTTSCHHHHHHH
T ss_pred HHHHHhcCCHHHHHHH
Confidence 5567777777777766
No 119
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=34.95 E-value=1.4e+02 Score=25.80 Aligned_cols=19 Identities=32% Similarity=0.375 Sum_probs=11.2
Q ss_pred HHHHHHhcCCHHHHHHHHH
Q psy3308 230 ALHVASHCGHVRVAKTLLD 248 (838)
Q Consensus 230 ~l~~A~~~g~~~iv~~L~~ 248 (838)
|...|-.+|..++.+.+++
T Consensus 121 A~~~A~t~g~~~~a~~~~~ 139 (177)
T 3mkq_B 121 AYAVAKANGDEAAASAFLE 139 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHH
Confidence 5555556666666665554
No 120
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=20.80 E-value=22 Score=28.23 Aligned_cols=28 Identities=11% Similarity=-0.014 Sum_probs=15.3
Q ss_pred ccCCCcHHHHHHHcCCHHHHHHHHHcCC
Q psy3308 125 TEHNITPLHVACKWGKVAMVELLISKGA 152 (838)
Q Consensus 125 ~~~~~~~l~~Aa~~g~~~iv~~L~~~~~ 152 (838)
|.-...++..|+.+|+.++++-|++...
T Consensus 32 DkLykDAietAa~S~d~elaEeLL~yFV 59 (125)
T 3qil_A 32 DSLYKDAMQYASESKDTELAEELLQWFL 59 (125)
T ss_dssp CCCSSHHHHTTTSSCCSHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344456666666666666665555433
Done!