RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3308
(838 letters)
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 432 bits (1114), Expect = e-144
Identities = 178/379 (46%), Positives = 254/379 (67%), Gaps = 17/379 (4%)
Query: 426 GETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASV 485
G TPLH+A+ IV+ LL+ GAS + + +TPLH+A+R G+ ++A LLQ+ A V
Sbjct: 14 GLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV 73
Query: 486 DAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLL 545
+A KD T LH +A+ G + +L E+ A+ T G TPLH+AA+ G ++ LL
Sbjct: 74 NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALL 133
Query: 546 QKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQG 605
+K AS TKKGFTPLH+AAKYG++++A++LL++DA ++ G
Sbjct: 134 EK-----------------EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAG 176
Query: 606 KNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNA 665
KNG+TPLHVA H+++ ++ LLL RG SPH+ A NGYTPLHIAAK+NQ+++A +LL+Y
Sbjct: 177 KNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG 236
Query: 666 KPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATI 725
NAES G TPLHL+AQEGH +M +LL+ A + K+GLTPLHL AQE V VA +
Sbjct: 237 SANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADV 296
Query: 726 TMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGR 785
+ +G +D T+ G+TPLH+ASH+G + +V++L+++ A+VNA T LGY+PLHQA+QQG
Sbjct: 297 LIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGH 356
Query: 786 VLIIDLLLGAGAQPNATTN 804
I+ LLL GA PN ++
Sbjct: 357 TDIVTLLLKNGASPNEVSS 375
Score = 429 bits (1107), Expect = e-143
Identities = 152/467 (32%), Positives = 231/467 (49%), Gaps = 48/467 (10%)
Query: 116 SKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDN 175
S G + E +TPLHVA G + +V+ L+ +GA+ TPLH AAR+GH
Sbjct: 2 SPGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTE 61
Query: 176 VIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVAS 235
V L++ A + +K K+ PLH A++ H ++L+ + A + T T LH+A+
Sbjct: 62 VAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAA 121
Query: 236 HCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPN 295
GHV LL+++A GFTPLH+A K V VA+ LL+R A PN
Sbjct: 122 REGHVETVLALLEKEASQACMTKKGFTPLHVAAKY--------GKVRVAELLLERDAHPN 173
Query: 296 ARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQ 355
A NG TPLH+A N +V+LLL G S + +G TPLH+A+ + +A LLQ
Sbjct: 174 AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQ 233
Query: 356 AGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSS 415
G + + +V+G TPLHLAA+ ++V +LL A+ + +
Sbjct: 234 YGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKS---------------- 277
Query: 416 ASQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIA 475
G TPLHL A+ + +L+++G VDA R TPLHVAS GN +
Sbjct: 278 ----------GLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLV 327
Query: 476 SLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKY 535
LLQH A V+A TK GY+ LH +A++G ++ ++L ++GAS + G TPL +A +
Sbjct: 328 KFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRL 387
Query: 536 GRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLA 582
G + + +L +T+ + + + K +
Sbjct: 388 GYISVTDVLKV--------------VTDETSFVLVSDKHRMSFPETV 420
Score = 426 bits (1099), Expect = e-142
Identities = 153/452 (33%), Positives = 232/452 (51%), Gaps = 37/452 (8%)
Query: 84 NGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAM 143
G + +G TPL++A+ H +V+ LL +G + ++ TPLH+A + G +
Sbjct: 3 PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEV 62
Query: 144 VELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQ 203
+ L+ A + AK +D TPLHCAAR GH N++ +L+E A T G PLH+A++
Sbjct: 63 AKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAR 122
Query: 204 GDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTP 263
H L+ A +T T LHVA+ G VRVA+ LL+R A PNA NG TP
Sbjct: 123 EGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTP 182
Query: 264 LHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKY 323
LH+A H N++ + K LL R P++ A NG+TPLHIA K+N+ +V LL+Y
Sbjct: 183 LHVAV--------HHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQY 234
Query: 324 GASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIV 383
G S A + G+TPLH+A+ G + LL A + G TPLHL A+ +
Sbjct: 235 GGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVA 294
Query: 384 RILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVR 443
+L+++G VDA R G TPLH+A+ +V+
Sbjct: 295 DVLIKHGVMVDATTRM--------------------------GYTPLHVASHYGNIKLVK 328
Query: 444 ILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEG 503
LL++ A V+A+ + +PLH A++ G+ DI +LLL++GAS + + DG T L I+ + G
Sbjct: 329 FLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLG 388
Query: 504 QDEVASIL---TESGASITATTKKGFTPLHLA 532
V +L T+ + + + K +
Sbjct: 389 YISVTDVLKVVTDETSFVLVSDKHRMSFPETV 420
Score = 424 bits (1092), Expect = e-141
Identities = 163/486 (33%), Positives = 252/486 (51%), Gaps = 59/486 (12%)
Query: 357 GAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSA 416
G + G TPLH+A+ IV+ LL+ GAS +
Sbjct: 4 GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSN------------------- 44
Query: 417 SQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIAS 476
V+ ETPLH+AARA T++ + LL+N A V+A+A++DQTPLH A+R+G+ ++
Sbjct: 45 -------VKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVK 97
Query: 477 LLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYG 536
LLL++ A+ + T G+T LHI+A+EG E L E AS TKKGFTPLH+AAKYG
Sbjct: 98 LLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYG 157
Query: 537 RMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQ 596
++++A++LL++ A A K G TPLH+A + + I ++LL
Sbjct: 158 KVRVAELLLER-----------------DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLP 200
Query: 597 KDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDI 656
+ S NG TPLH+A+ + VA LL G S +A + G TPLH+AA++ ++
Sbjct: 201 RGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEM 260
Query: 657 ATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQ 716
LL A N +K+G TPLHL AQEGH ++ +LI+HG V + G TPLH+ +
Sbjct: 261 VALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASH 320
Query: 717 EDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTP 776
+ + + + A+++ TK G++PLH A+ G ++V L++NGA+ N ++ G TP
Sbjct: 321 YGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTP 380
Query: 777 LHQASQQGRVLIIDLLLGA---GAQPNAT----TNLFCCATILVKNGAEIDPVTKLSDEH 829
L A + G + + D+L + + + ++ DE
Sbjct: 381 LAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETVDEILDVSE---------DEG 431
Query: 830 EKSIDL 835
E+ I
Sbjct: 432 EELISF 437
Score = 413 bits (1065), Expect = e-137
Identities = 149/446 (33%), Positives = 221/446 (49%), Gaps = 44/446 (9%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
G + K L+ GA+ NV ++ TPL+MAA+ H V +YLL + + TPL
Sbjct: 25 GHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPL 84
Query: 133 HVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTK 192
H A + G MV+LL+ AN T G TPLH AAR GH + L+EK A+ TK
Sbjct: 85 HCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTK 144
Query: 193 NGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKAD 252
G PLH+A++ +L+ A + + LT LHVA H ++ + K LL R
Sbjct: 145 KGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS 204
Query: 253 PNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKN 312
P++ A NG+TPLHIA K+ N V VA++LL NA ++ G TPLH+A ++
Sbjct: 205 PHSPAWNGYTPLHIAAKQ--------NQVEVARSLLQYGGSANAESVQGVTPLHLAAQEG 256
Query: 313 RYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLH 372
++V LLL A+ +SGLTPLH+ + G + +A L++ G D T G TPLH
Sbjct: 257 HAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLH 316
Query: 373 LAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHL 432
+A+ +V+ LL++ A V+A+ + G +PLH
Sbjct: 317 VASHYGNIKLVKFLLQHQADVNAKTKL--------------------------GYSPLHQ 350
Query: 433 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLL---LQHGASVDAPT 489
AA+ TDIV +LL+NGAS + + + TPL +A RLG + +L + V
Sbjct: 351 AAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSD 410
Query: 490 KDGYTALHI-------SAKEGQDEVA 508
K + S EG++ ++
Sbjct: 411 KHRMSFPETVDEILDVSEDEGEELIS 436
Score = 344 bits (886), Expect = e-111
Identities = 121/416 (29%), Positives = 195/416 (46%), Gaps = 55/416 (13%)
Query: 2 QQGHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCKAAALLLEVSFSNTKLEVSLSN 57
+ GH V LL+N + K K LH AA+
Sbjct: 56 RAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARI------------------------- 90
Query: 58 TKLEVSLSNTKFEATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSK 117
G + K+L++N A N+ + G TPL++AA+E H V LL K
Sbjct: 91 ---------------GHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 135
Query: 118 GGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVI 177
+Q T+ TPLHVA K+GKV + ELL+ + A+ A ++GLTPLH A + +++
Sbjct: 136 EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIV 195
Query: 178 DILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHC 237
+L+ +G + +S NG PLH+A++ + R L+ +G + +V +T LH+A+
Sbjct: 196 KLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQE 255
Query: 238 GHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNAR 297
GH + LL ++A+ N +G TPLH+ ++ HV VA L+ +A
Sbjct: 256 GHAEMVALLLSKQANGNLGNKSGLTPLHLVAQE--------GHVPVADVLIKHGVMVDAT 307
Query: 298 ALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAG 357
G+TPLH+A K+V+ LL++ A + A T+ G +PLH A+ G +I LL+ G
Sbjct: 308 TRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG 367
Query: 358 AAPDTATVRGETPLHLAARANQTDIVRILLR---NGASVDARAREDQTPLHVASRL 410
A+P+ + G TPL +A R + +L + V + + +
Sbjct: 368 ASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETVDEI 423
Score = 309 bits (795), Expect = 2e-97
Identities = 102/397 (25%), Positives = 167/397 (42%), Gaps = 64/397 (16%)
Query: 2 QQGHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCKAAALLLEVSFSNTKLEVSLSN 57
+ GH +V +LLEN + LHIAA++
Sbjct: 89 RIGHTNMVKLLLENNANPNLATTAGHTPLHIAARE------------------------- 123
Query: 58 TKLEVSLSNTKFEATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSK 117
G E L++ A+ + GFTPL++AA+ V LL +
Sbjct: 124 ---------------GHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLER 168
Query: 118 GGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVI 177
+ A ++ +TPLHVA + +V+LL+ +G + + +G TPLH AA+ V
Sbjct: 169 DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVA 228
Query: 178 DILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHC 237
L++ G + +++ G+ PLH+A+Q H +L+ A + LT LH+ +
Sbjct: 229 RSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQE 288
Query: 238 GHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNAR 297
GHV VA L+ +A G+TPLH+A ++ + K LL +AD NA+
Sbjct: 289 GHVPVADVLIKHGVMVDATTRMGYTPLHVASHY--------GNIKLVKFLLQHQADVNAK 340
Query: 298 ALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQA- 356
G++PLH A ++ +V LLLK GAS + G TPL +A +G +++ L
Sbjct: 341 TKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVT 400
Query: 357 --GAAPDTATVRGETPLHLAARANQTDIVRILLRNGA 391
+ + + V +L
Sbjct: 401 DETSFVLVSDKHRMSFPE---------TVDEILDVSE 428
Score = 213 bits (545), Expect = 2e-61
Identities = 79/306 (25%), Positives = 126/306 (41%), Gaps = 64/306 (20%)
Query: 2 QQGHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCKAAALLLEVSFSNTKLEVSLSN 57
+ +V +LL + LHIAAK+
Sbjct: 188 HHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQ------------------------- 222
Query: 58 TKLEVSLSNTKFEATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSK 117
Q EVA+ L+ G + N +S+ G TPL++AAQE H +V LLSK
Sbjct: 223 ---------------NQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSK 267
Query: 118 GGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVI 177
N L + +TPLH+ + G V + ++LI G ++A TR G TPLH A+ G+ ++
Sbjct: 268 QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLV 327
Query: 178 DILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHC 237
L++ A + +KTK G +PLH A+Q H +L+ +GA +E++ D T L +A
Sbjct: 328 KFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRL 387
Query: 238 GHVRVAKTL---LDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADP 294
G++ V L D + + + +LD D
Sbjct: 388 GYISVTDVLKVVTDETSFVLVSDKHRMSFPET-----------------VDEILDVSEDE 430
Query: 295 NARALN 300
++
Sbjct: 431 GEELIS 436
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 333 bits (857), Expect = e-107
Identities = 77/386 (19%), Positives = 131/386 (33%), Gaps = 58/386 (15%)
Query: 426 GETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASV 485
+H+AAR QTD VR L+ G S + R T LH+A + G D A L G
Sbjct: 20 NMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH 79
Query: 486 DAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLL 545
G +H++ + ++ L E ++G P L + ++ +
Sbjct: 80 SL--WHGQKPIHLAVMANKTDLVVALVEGAK------ERGQMPESLLNECDEREVNE--- 128
Query: 546 QKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYG--RMKIAQMLLQKDAPVDS 603
KG T LH G +++ ++L+Q A +
Sbjct: 129 --------------------IGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTA 168
Query: 604 QGKNGVTPLHVASHYDHQNVALLLLDRGASPH-----AVAKNGYTPLHIAAKKNQMDIAT 658
+ K TPL A + ++ L++D S K G + LH A N D+A
Sbjct: 169 KDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAM 228
Query: 659 TLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQED 718
+E N E PL+LS + ++ L++ QA P H
Sbjct: 229 RFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQA----CPYH------ 278
Query: 719 KVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLH 778
NG + P + A+ + +++ L E V + N G
Sbjct: 279 ----------NGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAV 328
Query: 779 QASQQGRVLIIDLLLGAGAQPNATTN 804
+ ++ + + L A +
Sbjct: 329 KRKKKAAPAVKRMKLAPSAPVRTRSR 354
Score = 332 bits (853), Expect = e-107
Identities = 65/384 (16%), Positives = 128/384 (33%), Gaps = 44/384 (11%)
Query: 124 ATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEK 183
+ + N+ +HVA + G+ V LI G + + R G T LH A + G + L
Sbjct: 16 SDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASV 75
Query: 184 GAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVA 243
G +G P+H+A + L+ + + + C V
Sbjct: 76 GEVH--SLWHGQKPIHLAVMANKTDLVVALVEGAKERGQ------MPESLLNECDEREVN 127
Query: 244 KTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFT 303
+ + + G T LH ++ + K L+ A P A+ T
Sbjct: 128 ------EIGSHVKHCKGQTALHWCVGLG------PEYLEMIKILVQLGASPTAKDKADET 175
Query: 304 PLHIACKKNRYKVVELLLKY-----GASIAATTESGLTPLHVASFMGCMNIAIFLLQAGA 358
PL A + + ++L++ + + G + LH A + ++A+ ++ G
Sbjct: 176 PLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGI 235
Query: 359 APDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQ---TPLHVASRLRRFSS 415
+ PL+L+ RA + + LL+ +A T L
Sbjct: 236 DVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLP---------- 285
Query: 416 ASQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIA 475
RV + AA ++ +++++L V + +
Sbjct: 286 ------DRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVK 339
Query: 476 SLLLQHGASVDAPTKDGYTALHIS 499
+ L A V ++ + +S
Sbjct: 340 RMKLAPSAPVRTRSRSRARSSAVS 363
Score = 327 bits (840), Expect = e-105
Identities = 70/404 (17%), Positives = 137/404 (33%), Gaps = 55/404 (13%)
Query: 250 KADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIAC 309
K + +H+A +K + L++ P + G T LH+AC
Sbjct: 10 KLNRIKSDDENMEKIHVAARKG--------QTDEVRRLIETGVSPTIQNRFGCTALHLAC 61
Query: 310 KKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGET 369
K + L G + G P+H+A ++ + L++ RG+
Sbjct: 62 KFGCVDTAKYLASVGEVHSL--WHGQKPIHLAVMANKTDLVVALVEGAK------ERGQM 113
Query: 370 PLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETP 429
P L ++ ++ + + QT LH L
Sbjct: 114 PESLLNECDEREVN------EIGSHVKHCKGQTALHWCVGLGP----------------- 150
Query: 430 LHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLL-----QHGAS 484
++++IL++ GAS A+ + D+TPL A N + L++ +
Sbjct: 151 -------EYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLR 203
Query: 485 VDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
+D K G + LH + ++VA E G + + PL+L+ + + + + L
Sbjct: 204 LDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKEL 263
Query: 545 LQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQ 604
LQK Q + +G ++ + AA + ++ Q+L +K V
Sbjct: 264 LQKTDVFLIQ----ACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRS 319
Query: 605 GKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIA 648
G V + L A +++ ++
Sbjct: 320 LNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVS 363
Score = 322 bits (828), Expect = e-103
Identities = 67/410 (16%), Positives = 127/410 (30%), Gaps = 67/410 (16%)
Query: 319 LLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARAN 378
+ + + + + +HVA+ G + L++ G +P G T LHLA +
Sbjct: 5 MTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFG 64
Query: 379 QTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQ 438
D + L G G+ P+HLA AN+
Sbjct: 65 CVDTAKYLASVGEVHSLW----------------------------HGQKPIHLAVMANK 96
Query: 439 TDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHI 498
TD+V L+ Q P + + ++ G TALH
Sbjct: 97 TDLVVALVEGAKERG------QMPESLLNECDEREVN------EIGSHVKHCKGQTALHW 144
Query: 499 SAKEGQD--EVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGK 556
G + E+ IL + GAS TA K TPL A ++ + +++
Sbjct: 145 CVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSK----- 199
Query: 557 VASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVAS 616
S + K+G + LH A +A ++ V+ + PL+++
Sbjct: 200 -------SSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSV 252
Query: 617 HYDHQNVALLLLDRGAS-------------PHAVAKNGYTPLHIAAKKNQMDIATTLLEY 663
+ LL + + AA ++ ++ L E
Sbjct: 253 RAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEK 312
Query: 664 NAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHL 713
+ G ++ + + + A V ++++ +
Sbjct: 313 LDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAV 362
Score = 317 bits (815), Expect = e-101
Identities = 65/407 (15%), Positives = 124/407 (30%), Gaps = 68/407 (16%)
Query: 146 LLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGD 205
+ N + + +H AAR G + + LIE G + + + G LH+A +
Sbjct: 5 MTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFG 64
Query: 206 HEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLH 265
+ L G +H+A + L++ + G P
Sbjct: 65 CVDTAKYLASVGEVHSL--WHGQKPIHLAVMANKTDLVVALVEGAKE------RGQMPES 116
Query: 266 IACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACK--KNRYKVVELLLKY 323
+ + C+ V + + + G T LH +++++L++
Sbjct: 117 LL--------NECDEREVN------EIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL 162
Query: 324 GASIAATTESGLTPLHVASFMGCMNIAIFLL-----QAGAAPDTATVRGETPLHLAARAN 378
GAS A ++ TPL A ++ ++ D A +G + LH A N
Sbjct: 163 GASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILIN 222
Query: 379 QTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQ 438
D+ + G V+ E PL+L+ RA
Sbjct: 223 WEDVAMRFVEMGIDVNMEDNE--------------------------HTVPLYLSVRAAM 256
Query: 439 TDIVRILL-------------RNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASV 485
+ + LL NG +V + A+ ++ LL + V
Sbjct: 257 VLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEV 316
Query: 486 DAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLA 532
G K+ V + A + ++ ++
Sbjct: 317 VRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVS 363
Score = 292 bits (750), Expect = 8e-92
Identities = 60/355 (16%), Positives = 107/355 (30%), Gaps = 42/355 (11%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
GQ + + L++ G + +Q+ G T L++A + +YL S G + H P+
Sbjct: 31 GQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHS--LWHGQKPI 88
Query: 133 HVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTK 192
H+A K +V L+ G P V +I K
Sbjct: 89 HLAVMANKTDLVVALVEGAKE------RGQMPESLLNECDEREVNEIGSHV------KHC 136
Query: 193 NGLAPLHMASQ--GDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRK 250
G LH ++ ++L+ GA T L A + ++D
Sbjct: 137 KGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTV 196
Query: 251 -----ADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPL 305
+ G + LH A N VA ++ D N PL
Sbjct: 197 PSKSSLRLDYANKQGNSHLHWAILI--------NWEDVAMRFVEMGIDVNMEDNEHTVPL 248
Query: 306 HIACKKNRYKVVELLL-------------KYGASIAATTESGLTPLHVASFMGCMNIAIF 352
+++ + + + LL G ++ L + A+ +
Sbjct: 249 YLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQL 308
Query: 353 LLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVA 407
L + + G + + R+ L A V R+R V+
Sbjct: 309 LQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVS 363
Score = 267 bits (685), Expect = 3e-82
Identities = 61/397 (15%), Positives = 117/397 (29%), Gaps = 86/397 (21%)
Query: 2 QQGHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCKAAALLLEVSFSNTKLEVSLSN 57
++G V L+E + + ALH+A K
Sbjct: 29 RKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKF------------------------- 63
Query: 58 TKLEVSLSNTKFEATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSK 117
G + AK L G ++ +G P+++A N +V L+
Sbjct: 64 ---------------GCVDTAKYLASVGEVHSLW--HGQKPIHLAVMANKTDLVVALVEG 106
Query: 118 GGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSG--HDN 175
+ P + + + + E K G T LH G +
Sbjct: 107 AKER------GQMPESLLNECDEREVNE------IGSHVKHCKGQTALHWCVGLGPEYLE 154
Query: 176 VIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIY-----HGAGVDEITVDYLTA 230
+I IL++ GA+ +K K PL A + + A +++ +D +
Sbjct: 155 MIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSH 214
Query: 231 LHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDR 290
LH A VA ++ D N PL+++ + V + K LL +
Sbjct: 215 LHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAA--------MVLLTKELLQK 266
Query: 291 KA-------------DPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTP 337
+ + A ++ +V++LL + + + +G
Sbjct: 267 TDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGG 326
Query: 338 LHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLA 374
+ L A T + ++
Sbjct: 327 AVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVS 363
Score = 260 bits (668), Expect = 6e-80
Identities = 62/383 (16%), Positives = 129/383 (33%), Gaps = 64/383 (16%)
Query: 475 ASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAK 534
S+ + + +H++A++GQ + L E+G S T + G T LHLA K
Sbjct: 3 GSMTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACK 62
Query: 535 YGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 594
+G + A+ L G + G P+HLA + + L
Sbjct: 63 FGCVDTAKYLASV-----------------GEVHSL--WHGQKPIHLAVMANKTDLVVAL 103
Query: 595 LQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQ- 653
++ + G P + + D + V H G T LH
Sbjct: 104 VEGAK------ERGQMPESLLNECDEREVN------EIGSHVKHCKGQTALHWCVGLGPE 151
Query: 654 -MDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIE-----HGATVSHQAKNG 707
+++ L++ A P A+ KA TPL + + + + L+++ + + K G
Sbjct: 152 YLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQG 211
Query: 708 LTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGAN-- 765
+ LH + +VA + G +++ PL+++ + + + L++
Sbjct: 212 NSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFL 271
Query: 766 -----------VNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTN-----LFC-- 807
V + + A+ + ++ LL + + N
Sbjct: 272 IQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRK 331
Query: 808 ------CATILVKNGAEIDPVTK 824
+ + A + ++
Sbjct: 332 KKAAPAVKRMKLAPSAPVRTRSR 354
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 312 bits (803), Expect = e-99
Identities = 92/402 (22%), Positives = 144/402 (35%), Gaps = 58/402 (14%)
Query: 107 HDG-VVRYLLSKGGNQTLATEHNITPLHVACKWG-KVAMVELLISKGANIEAKTRDGLTP 164
G L L E+ L A + G + ++ LL N A TP
Sbjct: 2 EFGKSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTP 61
Query: 165 LHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEIT 224
LH AA ++ +L++ GA +++K K GL PLH A H T +L+ HGA V+ +
Sbjct: 62 LHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMD 121
Query: 225 VDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVA 284
+ T LH A+ V V LL ADP +G + + +A
Sbjct: 122 LWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTP--------ELRERL 173
Query: 285 KTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFM 344
G + L A + + KV + L + +S T LH A
Sbjct: 174 TYEFK-----------GHSLLQAAREADLAKVKKTLALEIINFKQ-PQSHETALHCAVAS 221
Query: 345 GCMN---IAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQ 401
+A LL+ GA + TPLH+AA D++ +L ++GA ++A
Sbjct: 222 LHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSL-- 279
Query: 402 TPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQT 461
G+T LH AA A R+LL G+ + + T
Sbjct: 280 ------------------------GQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFT 315
Query: 462 PLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEG 503
+ + + +L + D L ++K G
Sbjct: 316 AAQMGN-----EAVQQILSESTPMRT--SDVDYRLLEASKAG 350
Score = 310 bits (797), Expect = 8e-99
Identities = 82/383 (21%), Positives = 149/383 (38%), Gaps = 51/383 (13%)
Query: 426 GETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGD-IASLLLQHGAS 484
G++ L LA A + L A+R GN + + +LL +
Sbjct: 4 GKSALDLAD-------------PSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVN 50
Query: 485 VDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
A T LH++A + + +L + GA + A K G PLH A YG ++ ++L
Sbjct: 51 CHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELL 110
Query: 545 LQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQ 604
L+ GA + A FTPLH AA R+++ +LL A
Sbjct: 111 LKH-----------------GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLV 153
Query: 605 GKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYN 664
+G + + +A + + G++ L A + + L
Sbjct: 154 NCHGKSAVDMAPTPELRERLTYEFK-----------GHSLLQAAREADL-AKVKKTLALE 201
Query: 665 AKPNAESKAGFTPLHLSAQEGH---TDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVN 721
+ ++ T LH + H ++ LL+ GA V+ + K+ +TPLH+ A+ +
Sbjct: 202 IINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHND 261
Query: 722 VATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQAS 781
V + +GA+++ + G T LH A+ G L R L+ G++ + + G+T +
Sbjct: 262 VMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGN 321
Query: 782 QQGRVLIIDLLLGAGAQPNATTN 804
+ + +L +
Sbjct: 322 E-----AVQQILSESTPMRTSDV 339
Score = 310 bits (796), Expect = 1e-98
Identities = 92/421 (21%), Positives = 145/421 (34%), Gaps = 77/421 (18%)
Query: 367 GETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRG 426
G++ L LA A + L
Sbjct: 4 GKSALDLAD-------------PSAKAVLTGEYKKDELL--------------------- 29
Query: 427 ETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVD 486
A N+ ++ +L + A TPLH+A+ I LLLQHGA V
Sbjct: 30 ----EAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVH 85
Query: 487 APTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQ 546
A K G LH + G EV +L + GA + A FTPLH AA R+++ +LL
Sbjct: 86 AKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLS 145
Query: 547 KDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGK 606
GA T G + + +A +
Sbjct: 146 H-----------------GADPTLVNCHGKSAVDMAPTPELRERLTYEF----------- 177
Query: 607 NGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKK---NQMDIATTLLEY 663
G + L A D V L ++ T LH A + +A LL
Sbjct: 178 KGHSLLQAAREADLAKVKKTL-ALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRK 236
Query: 664 NAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVA 723
A N ++K TPLH++A+ H D+ +L +HGA ++ G T LH A +
Sbjct: 237 GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTC 296
Query: 724 TITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQ 783
+ + G++ ++ GFT + + V+ ++ + + L +AS+
Sbjct: 297 RLLLSYGSDPSIISLQGFTAAQMGN-----EAVQQILSESTPMRTSDV--DYRLLEASKA 349
Query: 784 G 784
G
Sbjct: 350 G 350
Score = 308 bits (791), Expect = 6e-98
Identities = 88/400 (22%), Positives = 150/400 (37%), Gaps = 57/400 (14%)
Query: 76 EVAKILVDNGATINVQSLNGFTPLYMAAQENH-DGVVRYLLSKGGNQTLATEHNITPLHV 134
+ A L D A + L AA+ + + ++ L N + TPLH+
Sbjct: 5 KSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHL 64
Query: 135 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNG 194
A + +V +V+LL+ GA++ AK + GL PLH A GH V ++L++ GA + +
Sbjct: 65 AAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQ 124
Query: 195 LAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPN 254
PLH A+ + +L+ HGA + +A+ +A
Sbjct: 125 FTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFK------ 178
Query: 255 ARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKK--- 311
G + L A + + K L + + + T LH A
Sbjct: 179 -----GHSLLQAARE---------ADLAKVKKTLALEIINFKQPQSHETALHCAVASLHP 224
Query: 312 NRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPL 371
R +V ELLL+ GA++ + +TPLHVA+ ++ L + GA + G+T L
Sbjct: 225 KRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTAL 284
Query: 372 HLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLH 431
H AA A R+LL G+ + + T + +
Sbjct: 285 HRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGN----------------------- 321
Query: 432 LAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGN 471
+ V+ +L + + L AS+ G+
Sbjct: 322 --------EAVQQILSESTPMR--TSDVDYRLLEASKAGD 351
Score = 306 bits (787), Expect = 3e-97
Identities = 81/337 (24%), Positives = 134/337 (39%), Gaps = 24/337 (7%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
+E++ +L + TPL++AA N +V+ LL G + + + PL
Sbjct: 36 NEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPL 95
Query: 133 HVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTK 192
H AC +G + ELL+ GA + A TPLH AA V +L+ GA
Sbjct: 96 HNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNC 155
Query: 193 NGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKAD 252
+G + + MA + +L A+ + K L +
Sbjct: 156 HGKSAVDMAPTPELRERLTYEFKGH------------SLLQAAREADLAKVKKTLALEII 203
Query: 253 PNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKN 312
+ + T LH A H VA+ LL + A+ N + + TPLH+A ++
Sbjct: 204 NFKQPQSHETALHCAVASL-----HPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERA 258
Query: 313 RYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLH 372
V+E+L K+GA + A G T LH A+ G + LL G+ P +++G T
Sbjct: 259 HNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQ 318
Query: 373 LAARANQTDIVRILLRNGASVDARAREDQTPLHVASR 409
+ + V+ +L + + L AS+
Sbjct: 319 MGN-----EAVQQILSESTPMR--TSDVDYRLLEASK 348
Score = 294 bits (755), Expect = 1e-92
Identities = 87/366 (23%), Positives = 145/366 (39%), Gaps = 41/366 (11%)
Query: 471 NGDIASLLLQHGASVDAPTKDGYTALHISAKEG-QDEVASILTESGASITATTKKGFTPL 529
G A L A + L +A+ G ++++ ++LT + A+ + TPL
Sbjct: 3 FGKSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPL 62
Query: 530 HLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMK 589
HLAA Y R++I Q+LLQ GA + A K G PLH A YG +
Sbjct: 63 HLAAGYNRVRIVQLLLQH-----------------GADVHAKDKGGLVPLHNACSYGHYE 105
Query: 590 IAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAA 649
+ ++LL+ A V++ TPLH A+ + V LLL GA P V +G + + +A
Sbjct: 106 VTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAP 165
Query: 650 KKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLT 709
+ T + G + L + + + L Q ++ T
Sbjct: 166 TPELRERLTYEFK-----------GHSLLQAAREADLAKVKKTLALEII-NFKQPQSHET 213
Query: 710 PLHLCAQEDKVNVATITMF---NGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANV 766
LH + GA ++ K TPLH+A+ +++ L ++GA +
Sbjct: 214 ALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKM 273
Query: 767 NATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTN-----LFC---CATILVKNGAE 818
NA +LG T LH+A+ G + LLL G+ P+ + ++
Sbjct: 274 NALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNEAVQQILSESTP 333
Query: 819 IDPVTK 824
+
Sbjct: 334 MRTSDV 339
Score = 267 bits (684), Expect = 3e-82
Identities = 77/382 (20%), Positives = 126/382 (32%), Gaps = 74/382 (19%)
Query: 4 GHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCKAAALLLEVSFSNTKLEVSLSNTK 59
++++A+L K LH+AA
Sbjct: 36 NEEKLMALLTPLNVNCHASDGRKSTPLHLAAGY--------------------------- 68
Query: 60 LEVSLSNTKFEATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGG 119
+ + ++L+ +GA ++ + G PL+ A H V LL G
Sbjct: 69 -------------NRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGA 115
Query: 120 NQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDI 179
TPLH A +V + LL+S GA+ G + + A +
Sbjct: 116 CVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTY 175
Query: 180 LIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGH 239
G + L A + D + L + + TALH A H
Sbjct: 176 EF-----------KGHSLLQAAREADLAKVKKTLALEII-NFKQPQSHETALHCAVASLH 223
Query: 240 ---VRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNA 296
+VA+ LL + A+ N + + TPLH+A ++ H V + L A NA
Sbjct: 224 PKRKQVAELLLRKGANVNEKNKDFMTPLHVAAER--------AHNDVMEVLHKHGAKMNA 275
Query: 297 RALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQA 356
G T LH A + LLL YG+ + + G T + + +L
Sbjct: 276 LDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGN-----EAVQQILSE 330
Query: 357 GAAPDTATVRGETPLHLAARAN 378
T+ + L A++A
Sbjct: 331 STPMRTSD--VDYRLLEASKAG 350
Score = 253 bits (650), Expect = 2e-77
Identities = 86/351 (24%), Positives = 144/351 (41%), Gaps = 57/351 (16%)
Query: 490 KDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDA 549
+ G +AL L + A T + L AA+ G +
Sbjct: 2 EFGKSALD-------------LADPSAKAVLTGEYKKDELLEAARSGNEE---------- 38
Query: 550 PVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGV 609
K+ ++LT + A+ + TPLHLAA Y R++I Q+LLQ A V ++ K G+
Sbjct: 39 ------KLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGL 92
Query: 610 TPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNA 669
PLH A Y H V LLL GA +A+ +TPLH AA KN++++ + LL + A P
Sbjct: 93 VPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTL 152
Query: 670 ESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFN 729
+ G + + ++ + + + + L + D V +
Sbjct: 153 VNCHGKSAVDMAPTPELRERLTYEFKGH-----------SLLQAAREADLAKVKKT-LAL 200
Query: 730 GAEIDPVTKAGFTPLHIAS---HFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRV 786
++ T LH A H + + L+ GANVN TPLH A+++
Sbjct: 201 EIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHN 260
Query: 787 LIIDLLLGAGAQPNATTN-----LFCCA--------TILVKNGAEIDPVTK 824
++++L GA+ NA + L A +L+ G++ ++
Sbjct: 261 DVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISL 311
Score = 201 bits (515), Expect = 2e-58
Identities = 65/318 (20%), Positives = 110/318 (34%), Gaps = 74/318 (23%)
Query: 2 QQGHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCKAAALLLEVSFSNTKLEVSLSN 57
GH V +LL++ + + LH AA K
Sbjct: 100 SYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASK------------------------- 134
Query: 58 TKLEVSLSNTKFEATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSK 117
+ EV +L+ +GA + + +G + + MA + Y
Sbjct: 135 ---------------NRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKG 179
Query: 118 GGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVI 177
+ L A + + + L + N + + T LHCA S H
Sbjct: 180 H-----------SLLQAAREADLAKVKKTLALEIINF-KQPQSHETALHCAVASLHPKRK 227
Query: 178 DI---LIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVA 234
+ L+ KGA + K K+ + PLH+A++ H VL HGA ++ + TALH A
Sbjct: 228 QVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRA 287
Query: 235 SHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADP 294
+ GH++ + LL +DP+ +L GFT + + + +L
Sbjct: 288 ALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNE-------------AVQQILSESTPM 334
Query: 295 NARALNGFTPLHIACKKN 312
+ L A K
Sbjct: 335 RTS--DVDYRLLEASKAG 350
Score = 169 bits (430), Expect = 1e-46
Identities = 48/218 (22%), Positives = 77/218 (35%), Gaps = 16/218 (7%)
Query: 605 GKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAA-KKNQMDIATTLLEY 663
G+ G + L L D A + L AA N+ + L
Sbjct: 1 GEFGKSALD-------------LADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPL 47
Query: 664 NAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVA 723
N +A TPLHL+A + LL++HGA V + K GL PLH V
Sbjct: 48 NVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVT 107
Query: 724 TITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQ 783
+ + +GA ++ + FTPLH A+ ++ + L+ +GA+ G + + A
Sbjct: 108 ELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTP 167
Query: 784 GRVLIIDLLLGAGAQPNATT--NLFCCATILVKNGAEI 819
+ + A +L L
Sbjct: 168 ELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINF 205
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 278 bits (715), Expect = 5e-88
Identities = 63/266 (23%), Positives = 114/266 (42%), Gaps = 12/266 (4%)
Query: 93 LNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGA 152
++ ++P++ AA H +R L+S+G + T +++PLH AC G ++ V++L+ GA
Sbjct: 1 MSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGA 60
Query: 153 NIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRV 212
+ T D TPL A SG + +++L++ GA++ + +P+H A++ H
Sbjct: 61 QVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASV-QPESDLASPIHEAARRGHVECVNS 119
Query: 213 LIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNR 272
LI +G +D T L++A K LL+ AD N +PLH +
Sbjct: 120 LIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVART-- 176
Query: 273 YKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTE 332
+A L+D AD A+ G P+ + ++ + +L L+ +
Sbjct: 177 ------ASEELACLLMDFGADTQAKNAEGKRPVELVPPES--PLAQLFLEREGPPSLMQL 228
Query: 333 SGLTPLHVASFMGCMNIAIFLLQAGA 358
L I +L
Sbjct: 229 CRLRIRKCFGIQQHHKITKLVLPEDL 254
Score = 271 bits (695), Expect = 3e-85
Identities = 67/292 (22%), Positives = 111/292 (38%), Gaps = 38/292 (13%)
Query: 258 LNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVV 317
++ ++P+H A H + L+ + N + +PLH AC V
Sbjct: 1 MSDWSPMHEAA--------IHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCV 52
Query: 318 ELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARA 377
++LLK+GA + T TPL A G + LLQ GA+ +P+H AAR
Sbjct: 53 KILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ-PESDLASPIHEAARR 111
Query: 378 NQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARAN 437
+ V L+ G ++D + TPL+LA
Sbjct: 112 GHVECVNSLIAYGGNIDHKISH--------------------------LGTPLYLACENQ 145
Query: 438 QTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALH 497
Q V+ LL +GA V+ + +PLH +R + ++A LL+ GA A +G +
Sbjct: 146 QRACVKKLLESGADVNQ-GKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVE 204
Query: 498 ISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDA 549
+ E +A + E + KI +++L +D
Sbjct: 205 LVPPES--PLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDL 254
Score = 270 bits (693), Expect = 6e-85
Identities = 66/301 (21%), Positives = 114/301 (37%), Gaps = 47/301 (15%)
Query: 299 LNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGA 358
++ ++P+H A + L+ G ++ T ++PLH A G ++ LL+ GA
Sbjct: 1 MSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGA 60
Query: 359 APDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQ 418
+ T TPL A + D V +LL++GASV +
Sbjct: 61 QVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES--------------------- 99
Query: 419 SALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLL 478
+P+H AAR + V L+ G ++D + TPL++A L
Sbjct: 100 ------DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKL 153
Query: 479 LQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRM 538
L+ GA V+ K + LH A+ +E+A +L + GA A +G P+ L
Sbjct: 154 LESGADVNQ-GKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPES-- 210
Query: 539 KIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKD 598
+AQ+ L++ + KI +++L +D
Sbjct: 211 PLAQLFLER-----------------EGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPED 253
Query: 599 A 599
Sbjct: 254 L 254
Score = 260 bits (667), Expect = 4e-81
Identities = 60/274 (21%), Positives = 105/274 (38%), Gaps = 21/274 (7%)
Query: 525 GFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAK 584
++P+H AA +G + L+ + G ++ T +PLH A
Sbjct: 3 DWSPMHEAAIHGHQLSLRNLISQ-----------------GWAVNIITADHVSPLHEACL 45
Query: 585 YGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTP 644
G + ++LL+ A V+ + TPL A + LLL GAS + +P
Sbjct: 46 GGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP-ESDLASP 104
Query: 645 LHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQA 704
+H AA++ ++ +L+ Y + + TPL+L+ + L+E GA V +Q
Sbjct: 105 IHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADV-NQG 163
Query: 705 KNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGA 764
K +PLH A+ +A + M GA+ G P+ + L + +E
Sbjct: 164 KGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPL--AQLFLEREG 221
Query: 765 NVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQ 798
+ Q I L+L +
Sbjct: 222 PPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDLK 255
Score = 257 bits (660), Expect = 4e-80
Identities = 62/253 (24%), Positives = 110/253 (43%), Gaps = 12/253 (4%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
G + + L+ G +N+ + + +PL+ A H V+ LL G T TPL
Sbjct: 14 GHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPL 73
Query: 133 HVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTK 192
AC G V LL+ GA+++ ++ D +P+H AAR GH ++ LI G + K
Sbjct: 74 FNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKIS 132
Query: 193 NGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKAD 252
+ PL++A + A + L+ GA V++ + LH + +A L+D AD
Sbjct: 133 HLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVARTASEELACLLMDFGAD 191
Query: 253 PNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKN 312
A+ G P+ + ++ +A+ L+R+ P+ L +
Sbjct: 192 TQAKNAEGKRPVELVPPESP----------LAQLFLEREGPPSLMQLCRLRIRKCFGIQQ 241
Query: 313 RYKVVELLLKYGA 325
+K+ +L+L
Sbjct: 242 HHKITKLVLPEDL 254
Score = 241 bits (619), Expect = 4e-74
Identities = 56/230 (24%), Positives = 101/230 (43%), Gaps = 4/230 (1%)
Query: 575 GFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASP 634
++P+H AA +G + L+ + V+ + V+PLH A H + +LL GA
Sbjct: 3 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV 62
Query: 635 HAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLI 694
+ V + +TPL A D LL++ A ES +P+H +A+ GH + + LI
Sbjct: 63 NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESD-LASPIHEAARRGHVECVNSLI 121
Query: 695 EHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLN 754
+G + H+ + TPL+L + + + +GA+++ K +PLH +
Sbjct: 122 AYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVARTASEE 180
Query: 755 MVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTN 804
+ L++ GA+ A G P+ + + L L P+
Sbjct: 181 LACLLMDFGADTQAKNAEGKRPVELVPPESP--LAQLFLEREGPPSLMQL 228
Score = 207 bits (529), Expect = 3e-61
Identities = 54/225 (24%), Positives = 96/225 (42%), Gaps = 13/225 (5%)
Query: 607 NGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAK 666
+ +P+H A+ + HQ L+ +G + + + + +PLH A + LL++ A+
Sbjct: 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 61
Query: 667 PNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATIT 726
N + TPL + G D +LL++HGA+V + +P+H A+ V
Sbjct: 62 VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASV-QPESDLASPIHEAARRGHVECVNSL 120
Query: 727 MFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRV 786
+ G ID TPL++A Q V+ L+E+GA+VN +PLH ++
Sbjct: 121 IAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKG-QDSPLHAVARTASE 179
Query: 787 LIIDLLLGAGAQPNATTN-----LFC------CATILVKNGAEID 820
+ LL+ GA A + A + ++
Sbjct: 180 ELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQLFLEREGPPS 224
Score = 187 bits (477), Expect = 4e-54
Identities = 48/254 (18%), Positives = 94/254 (37%), Gaps = 48/254 (18%)
Query: 2 QQGHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCKAAALLLEVSFSNTKLEVSLSN 57
GH V +LL++ + L A
Sbjct: 45 LGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVS------------------------- 79
Query: 58 TKLEVSLSNTKFEATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSK 117
G + +L+ +GA++ +S + +P++ AA+ H V L++
Sbjct: 80 ---------------GSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAY 123
Query: 118 GGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVI 177
GGN H TPL++AC+ + A V+ L+ GA++ + + +PLH AR+ + +
Sbjct: 124 GGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVARTASEELA 182
Query: 178 DILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHC 237
+L++ GA +K G P+ + A ++ + + + L
Sbjct: 183 CLLMDFGADTQAKNAEGKRPVELVPPESPLA--QLFLEREGPPSLMQLCRLRIRKCFGIQ 240
Query: 238 GHVRVAKTLLDRKA 251
H ++ K +L
Sbjct: 241 QHHKITKLVLPEDL 254
Score = 73.6 bits (182), Expect = 1e-14
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 20/86 (23%)
Query: 739 AGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQ 798
+ ++P+H A+ G +R L+ G VN T +PLH+A G + + +LL
Sbjct: 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILL----- 56
Query: 799 PNATTNLFCCATILVKNGAEIDPVTK 824
K+GA+++ VT
Sbjct: 57 ---------------KHGAQVNGVTA 67
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 277 bits (710), Expect = 7e-86
Identities = 74/387 (19%), Positives = 129/387 (33%), Gaps = 66/387 (17%)
Query: 426 GETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASV 485
+ L A+ R L++ + P GN + +
Sbjct: 37 SQHSLLEASYDGYIKRQRNELQHYS---------LYPNPQGYGNGNDFLGDFNHTNLQIP 87
Query: 486 DAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLL 545
P + LH A G + +T +I + T LH A + ++ L+
Sbjct: 88 TEPEPESPIKLHTEAA-GSYAITEPITRESVNI-IDPRHNRTVLHWIASNSSAEKSEDLI 145
Query: 546 QKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQG 605
+A +GA + A TPL LA R ++ L++ A
Sbjct: 146 VHEA---------KECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYN 196
Query: 606 KNGVTPLHVASHYDHQNVALLLLD---RGASPHAVAKNGYTPLHIAAKKN---QMDIATT 659
K+ + LH A+ + + +L+ + +NG T L I A Q+ A
Sbjct: 197 KSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKL 256
Query: 660 LLEYNAKPN--------AESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPL 711
L+E AK + +E G T LH +AQ + + L+
Sbjct: 257 LVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGE--------------- 301
Query: 712 HLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTN 771
G+ D + G TP+ +A+ G++ +V YL++ GA+V A
Sbjct: 302 -----------------KGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDA 344
Query: 772 LGYTPLHQASQQGRVLIIDLLLGAGAQ 798
+T A I+D+ +
Sbjct: 345 TDHTARQLAQANNHHNIVDIFDRCRPE 371
Score = 268 bits (687), Expect = 1e-82
Identities = 71/377 (18%), Positives = 129/377 (34%), Gaps = 36/377 (9%)
Query: 149 SKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEA 208
K L A+ G+ ++ L P ++
Sbjct: 25 EKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQ---------HYSLYPNPQGYGNGNDF 75
Query: 209 ATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIAC 268
+ E + LH + G + + + + + T LH
Sbjct: 76 LGDFNHTNLQIPTEPEPESPIKLHTEAA-GSYAITEPITRESVNIIDPR-HNRTVLHWIA 133
Query: 269 KKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIA 328
+ + S V AK + AD NA + TPL +A R ++V L+K GA
Sbjct: 134 SNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPT 193
Query: 329 ATTESGLTPLHVASFMGCMNIAIFLLQ---AGAAPDTATVRGETPLHLAARANQTD---I 382
+S + LH A+ + +++L + G T L + A D
Sbjct: 194 IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVAS 253
Query: 383 VRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIV 442
++L+ GA VD + + +G T LH AA+ + IV
Sbjct: 254 AKLLVEKGAKVDYDGAARKD------------------SEKYKGRTALHYAAQVSNMPIV 295
Query: 443 RILLR-NGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAK 501
+ L+ G++ D + + +TP+ +A++ G ++ L+Q GASV+A +TA ++
Sbjct: 296 KYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQA 355
Query: 502 EGQDEVASILTESGASI 518
+ I
Sbjct: 356 NNHHNIVDIFDRCRPER 372
Score = 267 bits (686), Expect = 2e-82
Identities = 75/393 (19%), Positives = 132/393 (33%), Gaps = 61/393 (15%)
Query: 289 DRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMN 348
++ + + L A K L++ L P G
Sbjct: 25 EKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHY---------SLYPNPQGYGNGNDF 75
Query: 349 IAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVAS 408
+ F P LH A A I + R ++ + +
Sbjct: 76 LGDFNHTNLQIPTEPEPESPIKLHTEA-AGSYAITEPITRESVNII----DPR------- 123
Query: 409 RLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRN--------GASVDARAREDQ 460
T LH A + + L+ + GA V+A ++
Sbjct: 124 ----------------HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDEN 167
Query: 461 TPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASIL---TESGAS 517
TPL +A + + L++ GA K +ALH +A + + T+
Sbjct: 168 TPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGD 227
Query: 518 ITATTKKGFTPLHLAAKYG---RMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKK 574
I + G T L + A ++ A++L+ +G A + + A + K
Sbjct: 228 IEELDRNGMTALMIVAHNEGRDQVASAKLLV-------EKG--AKVDYDGAARKDSEKYK 278
Query: 575 GFTPLHLAAKYGRMKIAQMLL-QKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGAS 633
G T LH AA+ M I + L+ +K + D Q ++G TP+ +A+ V + L+ +GAS
Sbjct: 279 GRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS 338
Query: 634 PHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAK 666
AV +T +A N +I +
Sbjct: 339 VEAVDATDHTARQLAQANNHHNIVDIFDRCRPE 371
Score = 262 bits (672), Expect = 2e-80
Identities = 69/337 (20%), Positives = 114/337 (33%), Gaps = 27/337 (8%)
Query: 78 AKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACK 137
A N P +D + + + T + LH
Sbjct: 44 ASYDGYIKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAA 103
Query: 138 WGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILI--------EKGAALYS 189
G A+ E + + NI R T LH A + + LI GA + +
Sbjct: 104 -GSYAITEPITRESVNI-IDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNA 161
Query: 190 KTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDR 249
+ PL +A L+ GA +ALH A+ + +L+
Sbjct: 162 MDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNS 221
Query: 250 K---ADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARAL------- 299
D NG T L I + V AK L+++ A +
Sbjct: 222 TKLKGDIEELDRNGMTALMIVAHNE-----GRDQVASAKLLVEKGAKVDYDGAARKDSEK 276
Query: 300 -NGFTPLHIACKKNRYKVVELLL-KYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAG 357
G T LH A + + +V+ L+ + G++ E G TP+ +A+ G + + ++L+Q G
Sbjct: 277 YKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG 336
Query: 358 AAPDTATVRGETPLHLAARANQTDIVRILLRNGASVD 394
A+ + T LA N +IV I R +
Sbjct: 337 ASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPERE 373
Score = 254 bits (650), Expect = 3e-77
Identities = 73/402 (18%), Positives = 118/402 (29%), Gaps = 77/402 (19%)
Query: 388 RNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILLR 447
Q L AS Q + P +
Sbjct: 25 EKNRKNHQSITSSQHSLLEASYD--GYIKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHT 82
Query: 448 NGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEV 507
N E LH + G+ I + + ++ + T LH A E
Sbjct: 83 NLQIPTEPEPESPIKLHTEAA-GSYAITEPITRESVNIID-PRHNRTVLHWIASNSSAEK 140
Query: 508 ASIL--------TESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVAS 559
+ L +GA + A TPL LA R ++ L++
Sbjct: 141 SEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKA------------ 188
Query: 560 ILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKD---APVDSQGKNGVTPLHVAS 616
GA T K + LH AA + +L ++ +NG+T L + +
Sbjct: 189 -----GADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVA 243
Query: 617 ---HYDHQNVALLLLDRGA--------SPHAVAKNGYTPLHIAAKKNQMDIATTLLEYN- 664
D A LL+++GA + G T LH AA+ + M I L+
Sbjct: 244 HNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKG 303
Query: 665 AKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVAT 724
+ + + + G TP+ L+AQEG ++ LI+
Sbjct: 304 SNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ---------------------------- 335
Query: 725 ITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANV 766
GA ++ V T +A N+V
Sbjct: 336 -----GASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER 372
Score = 249 bits (637), Expect = 2e-75
Identities = 72/397 (18%), Positives = 123/397 (30%), Gaps = 85/397 (21%)
Query: 229 TALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLL 288
+L AS+ G+++ + L P + ++
Sbjct: 39 HSLLEASYDGYIKRQRNELQH---------YSLYPNPQG--------YGNGNDFLGDFNH 81
Query: 289 DRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMN 348
P LH Y + E + + +I T LH +
Sbjct: 82 TNLQIPTEPEPESPIKLHTEAA-GSYAITEPITRESVNIIDP-RHNRTVLHWIASNSSAE 139
Query: 349 IAIFLL--------QAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARARED 400
+ L+ AGA + TPL LA A + +V L++ GA +
Sbjct: 140 KSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKS- 198
Query: 401 QTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRN---GASVDARAR 457
+ LH AA ++ +L + ++ R
Sbjct: 199 -------------------------ERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDR 233
Query: 458 EDQTPLHVASRLGNGD---IASLLLQHGASV--------DAPTKDGYTALHISAKEGQDE 506
T L + + D A LL++ GA V D+ G TALH +A+
Sbjct: 234 NGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMP 293
Query: 507 VASIL-TESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESG 565
+ L E G++ + G TP+ LAA+ GR+++ L+Q+ G
Sbjct: 294 IVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ-----------------G 336
Query: 566 ASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVD 602
AS+ A T LA I + + +
Sbjct: 337 ASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPERE 373
Score = 246 bits (630), Expect = 3e-74
Identities = 62/309 (20%), Positives = 114/309 (36%), Gaps = 33/309 (10%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
G + + N L+ A + + + N HN T L
Sbjct: 72 GNDFLGDFNHTNLQIPTEPEPESPIKLHTEAA-GSYAITEPITRESVNII-DPRHNRTVL 129
Query: 133 HVACKWGKVAMVELLI--------SKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKG 184
H E LI + GA++ A D TPL A + ++ L++ G
Sbjct: 130 HWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAG 189
Query: 185 AALYSKTKNGLAPLHMASQGDHEAATRVLIYH---GAGVDEITVDYLTALHVASHCGH-- 239
A K+ + LH A+ ++ ++E+ + +TAL + +H
Sbjct: 190 ADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRD 249
Query: 240 -VRVAKTLLDRKADPNARAL--------NGFTPLHIACKKNRYKSSHCNHVWVAKTLLDR 290
V AK L+++ A + G T LH A + +++ + K L+
Sbjct: 250 QVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYA--------AQVSNMPIVKYLVGE 301
Query: 291 K-ADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNI 349
K ++ + + +G TP+ +A ++ R +VV L++ GAS+ A + T +A NI
Sbjct: 302 KGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNI 361
Query: 350 AIFLLQAGA 358
+
Sbjct: 362 VDIFDRCRP 370
Score = 229 bits (585), Expect = 6e-68
Identities = 66/375 (17%), Positives = 122/375 (32%), Gaps = 64/375 (17%)
Query: 482 GASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIA 541
+L ++ +G + + P G +
Sbjct: 27 NRKNHQSITSSQHSLLEASYDGYIKRQRNELQ---------HYSLYPNPQGYGNGNDFLG 77
Query: 542 QMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPV 601
T + LH A G I + + ++ +
Sbjct: 78 DFNHTN-----------------LQIPTEPEPESPIKLHTEAA-GSYAITEPITRESVNI 119
Query: 602 DSQGKNGVTPLHVASHYDHQNVALLLL--------DRGASPHAVAKNGYTPLHIAAKKNQ 653
++ T LH + + L+ GA +A+ + TPL +A +
Sbjct: 120 I-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARR 178
Query: 654 MDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEH---GATVSHQAKNGLTP 710
+ L++ A P +K+ + LH +A M ++ + +NG+T
Sbjct: 179 RRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTA 238
Query: 711 LHLCAQE---DKVNVATITMFNGAEIDPVTKA--------GFTPLHIASHFGQLNMVRYL 759
L + A D+V A + + GA++D A G T LH A+ + +V+YL
Sbjct: 239 LMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYL 298
Query: 760 V-ENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTN-----LFC------ 807
V E G+N + G TP+ A+Q+GR+ ++ L+ GA A
Sbjct: 299 VGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNH 358
Query: 808 --CATILVKNGAEID 820
I + E +
Sbjct: 359 HNIVDIFDRCRPERE 373
Score = 173 bits (441), Expect = 6e-48
Identities = 45/261 (17%), Positives = 77/261 (29%), Gaps = 25/261 (9%)
Query: 563 ESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQN 622
E + L A+ G +K + LQ + P +
Sbjct: 25 EKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQH---------YSLYPNPQGYGNGNDF 75
Query: 623 VALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSA 682
+ P LH A I + + + + T LH A
Sbjct: 76 LGDFNHTNLQIPTEPEPESPIKLHTEA-AGSYAITEPITRESVNII-DPRHNRTVLHWIA 133
Query: 683 QEGHTDMSSLLIEH--------GATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEID 734
+ S LI H GA V+ + TPL L + + M GA+
Sbjct: 134 SNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPT 193
Query: 735 PVTKAGFTPLHIASHFGQLNMVRYLVEN---GANVNATTNLGYTPLHQASQQG---RVLI 788
K+ + LH A+ M+ Y++ + ++ G T L + +V
Sbjct: 194 IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVAS 253
Query: 789 IDLLLGAGAQPNATTNLFCCA 809
LL+ GA+ + +
Sbjct: 254 AKLLVEKGAKVDYDGAARKDS 274
Score = 146 bits (371), Expect = 2e-38
Identities = 32/164 (19%), Positives = 60/164 (36%), Gaps = 15/164 (9%)
Query: 73 GQEEVAKILVDN---GATINVQSLNGFTPLYMAAQENHDG---VVRYLLSKGGNQTLATE 126
+ ++++ I NG T L + A + L+ KG
Sbjct: 210 RDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGA 269
Query: 127 HNI--------TPLHVACKWGKVAMVELLIS-KGANIEAKTRDGLTPLHCAARSGHDNVI 177
T LH A + + +V+ L+ KG+N + + DG TP+ AA+ G V+
Sbjct: 270 ARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVV 329
Query: 178 DILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVD 221
LI++GA++ + +A +H + +
Sbjct: 330 MYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPERE 373
Score = 46.1 bits (110), Expect = 3e-05
Identities = 13/104 (12%), Positives = 23/104 (22%), Gaps = 21/104 (20%)
Query: 729 NGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLI 788
+ + L AS+ G + R +++ P Q G +
Sbjct: 26 KNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHY---------SLYPNPQGYGNGNDFL 76
Query: 789 IDLLLGAGAQPNATTN-----LFCCAT-------ILVKNGAEID 820
D P L A + + I
Sbjct: 77 GDFNHTNLQIPTEPEPESPIKLHTEAAGSYAITEPITRESVNII 120
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 267 bits (685), Expect = 2e-83
Identities = 66/289 (22%), Positives = 102/289 (35%), Gaps = 33/289 (11%)
Query: 426 GETPLHLAARANQTDIVRILLRNGA---SVDARAREDQTPLHVASRLGNGDIASLLLQHG 482
G+T LHLA + LL A +D + QT LH+A+ LG L G
Sbjct: 9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG 68
Query: 483 ASVDAPTKDGYTALHISAKEGQDEVASILTESGASITA-------------TTKKGFTPL 529
A V + G+TALH++ + A +L + S T P
Sbjct: 69 AGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPA 128
Query: 530 HLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMK 589
+ ++ + + A G TPLH+A + +
Sbjct: 129 AVDSQPNPENE----------------EEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAE 172
Query: 590 IAQMLLQKDAPVDSQGKN-GVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIA 648
+ ++L A ++ G TPLH+A +V LLL GA P A G TPL A
Sbjct: 173 MVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSA 232
Query: 649 AKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHG 697
+ +A L + A + +P S + +D E+
Sbjct: 233 LLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEYD 281
Score = 254 bits (650), Expect = 2e-78
Identities = 66/304 (21%), Positives = 99/304 (32%), Gaps = 31/304 (10%)
Query: 88 INVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTL---ATEHNITPLHVACKWGKVAMV 144
+ +G T L++A H+ + +LL + T LH+A G+ + V
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61
Query: 145 ELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQG 204
E L + GA + R G T LH A R +L++ + +
Sbjct: 62 EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121
Query: 205 DHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPL 264
D + A + D + A +G TPL
Sbjct: 122 DT-------------------SHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL 162
Query: 265 HIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALN-GFTPLHIACKKNRYKVVELLLKY 323
H+A + + L D AD N G TPLH+A + V+ELLLK
Sbjct: 163 HVAVIHK--------DAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA 214
Query: 324 GASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIV 383
GA A G TPL A +A L GA +P + + +D
Sbjct: 215 GADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNR 274
Query: 384 RILL 387
Sbjct: 275 DEGD 278
Score = 251 bits (644), Expect = 1e-77
Identities = 64/269 (23%), Positives = 99/269 (36%), Gaps = 9/269 (3%)
Query: 460 QTPLHVASRLGNGDIASLLLQHGA---SVDAPTKDGYTALHISAKEGQDEVASILTESGA 516
T LH+A + LL A +D G TALH++A G+ L +GA
Sbjct: 10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69
Query: 517 SITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGF 576
+ + G T LHLA + A +LLQ + T
Sbjct: 70 GVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDC----TPDTSH 125
Query: 577 TPLHLAAKYGRMK-IAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPH 635
P + ++ ++++ +G TPLHVA + + LL D GA +
Sbjct: 126 APAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLN 185
Query: 636 AVAKN-GYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLI 694
G TPLH+A + + LL+ A P A G TPL + + ++ LL
Sbjct: 186 KPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLR 245
Query: 695 EHGATVSHQAKNGLTPLHLCAQEDKVNVA 723
HGA + L+P + +
Sbjct: 246 AHGAPEPEDGGDKLSPCSSSGSDSDSDNR 274
Score = 245 bits (628), Expect = 3e-75
Identities = 64/289 (22%), Positives = 96/289 (33%), Gaps = 29/289 (10%)
Query: 520 ATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPL 579
T+ G T LHLA + LL A + G T L
Sbjct: 4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSA--------------GHEYLDLQNDLGQTAL 49
Query: 580 HLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASP----- 634
HLAA G + L A V + G T LH+A A +LL S
Sbjct: 50 HLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDAS 109
Query: 635 --------HAVAKNGYTPLHIAAKKN-QMDIATTLLEYNAKPNAESKAGFTPLHLSAQEG 685
+ P + ++ N + + ++ + AE+ G TPLH++
Sbjct: 110 DTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHK 169
Query: 686 HTDMSSLLIEHGATVSHQAKN-GLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPL 744
+M LL + GA ++ G TPLHL + +V + + GA+ G TPL
Sbjct: 170 DAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPL 229
Query: 745 HIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLL 793
A + R L +GA +P + D
Sbjct: 230 GSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGD 278
Score = 243 bits (624), Expect = 1e-74
Identities = 66/266 (24%), Positives = 94/266 (35%), Gaps = 10/266 (3%)
Query: 154 IEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS---KTKNGLAPLHMASQGDHEAAT 210
T DG T LH A H+ +D L+ A + G LH+A+ +
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61
Query: 211 RVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKK 270
L GAGV TALH+A A LL + A + + C
Sbjct: 62 EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121
Query: 271 NR------YKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYG 324
+ S D + A +G TPLH+A ++V LL G
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAG 181
Query: 325 ASI-AATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIV 383
A + G TPLH+A ++ LL+AGA P G TPL A +
Sbjct: 182 ADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILA 241
Query: 384 RILLRNGASVDARAREDQTPLHVASR 409
R+L +GA + +P +
Sbjct: 242 RLLRAHGAPEPEDGGDKLSPCSSSGS 267
Score = 238 bits (610), Expect = 1e-72
Identities = 52/270 (19%), Positives = 90/270 (33%), Gaps = 26/270 (9%)
Query: 73 GQEEVAKILVDNGA---TINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNI 129
E L+ A +++Q+ G T L++AA V L + G +A
Sbjct: 20 QHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGH 79
Query: 130 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTP--------------LHCAARSGHDN 175
T LH+AC+ +L+ + D + + +
Sbjct: 80 TALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENE 139
Query: 176 VIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDY-LTALHVA 234
+ L ++ +G PLH+A R+L GA +++ T LH+A
Sbjct: 140 EEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLA 199
Query: 235 SHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADP 294
V + LL ADP AR G TPL A + + +A+ L A
Sbjct: 200 VEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRP--------NPILARLLRAHGAPE 251
Query: 295 NARALNGFTPLHIACKKNRYKVVELLLKYG 324
+ +P + + + +Y
Sbjct: 252 PEDGGDKLSPCSSSGSDSDSDNRDEGDEYD 281
Score = 225 bits (576), Expect = 9e-68
Identities = 56/253 (22%), Positives = 91/253 (35%), Gaps = 18/253 (7%)
Query: 570 ATTKKGFTPLHLAAKYGRMKIAQMLLQKDA---PVDSQGKNGVTPLHVASHYDHQNVALL 626
T+ G T LHLA + LL A +D Q G T LH+A+ +
Sbjct: 4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEK 63
Query: 627 LLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAE-------------SKA 673
L GA + G+T LH+A + A LL+ +
Sbjct: 64 LYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDT 123
Query: 674 GFTPLHLSAQE-GHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAE 732
P + +Q + + + + +G TPLH+ + + GA+
Sbjct: 124 SHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD 183
Query: 733 IDPVTK-AGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDL 791
++ G TPLH+A +++ L++ GA+ A G TPL A + ++ L
Sbjct: 184 LNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARL 243
Query: 792 LLGAGAQPNATTN 804
L GA
Sbjct: 244 LRAHGAPEPEDGG 256
Score = 168 bits (427), Expect = 5e-47
Identities = 45/218 (20%), Positives = 78/218 (35%), Gaps = 12/218 (5%)
Query: 2 QQGHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCKAAALLLEVSFSNTKLEVSLSN 57
G V L + ALH+A + A +LL+ S+ +
Sbjct: 54 ILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYL 113
Query: 58 TKLEVSLSNTKFEAT-------GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGV 110
T+ + +T + E D + ++ +G TPL++A +
Sbjct: 114 TQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEM 173
Query: 111 VRYLLSKGGNQTLAT-EHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAA 169
VR L G + TPLH+A + +++ELL+ GA+ A+ G TPL A
Sbjct: 174 VRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSAL 233
Query: 170 RSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHE 207
+ + +L GA + L+P +
Sbjct: 234 LRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDS 271
Score = 128 bits (324), Expect = 4e-33
Identities = 38/201 (18%), Positives = 63/201 (31%), Gaps = 24/201 (11%)
Query: 2 QQGHDRVVAVLLEN-----------------DTKGKVKLPALHIAAKKDDCKAAALLLEV 44
+ VLL+ D + ++ + E
Sbjct: 87 RVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDED 146
Query: 45 SFSNTKLEVSLSNTKLEVSLSNTKFEATGQEEVAKILVDNGATINVQSLN-GFTPLYMAA 103
+ E +T L V++ + E+ ++L D GA +N G TPL++A
Sbjct: 147 WRLQLEAENYDGHTPLHVAVIH------KDAEMVRLLRDAGADLNKPEPTCGRTPLHLAV 200
Query: 104 QENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLT 163
+ V+ LL G + T TPL A + LL + GA D L+
Sbjct: 201 EAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLS 260
Query: 164 PLHCAARSGHDNVIDILIEKG 184
P + + D E
Sbjct: 261 PCSSSGSDSDSDNRDEGDEYD 281
Score = 115 bits (290), Expect = 1e-28
Identities = 30/183 (16%), Positives = 49/183 (26%), Gaps = 30/183 (16%)
Query: 668 NAESKAGFTPLHLSAQEGHTDMSSLLIEHGA---TVSHQAKNGLTPLHLCAQEDKVNVAT 724
++ G T LHL+ H L+ A + Q G T LHL A + +
Sbjct: 3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVE 62
Query: 725 ITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTP-------- 776
GA + + G T LH+A L++ + + Y
Sbjct: 63 KLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPD 122
Query: 777 ------LHQASQQGRVLIIDLLLGAGAQPNATTN-----LFC--------CATILVKNGA 817
+ Q A L +L GA
Sbjct: 123 TSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGA 182
Query: 818 EID 820
+++
Sbjct: 183 DLN 185
Score = 41.0 bits (97), Expect = 9e-04
Identities = 16/71 (22%), Positives = 20/71 (28%), Gaps = 16/71 (22%)
Query: 766 VNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP---NATTN-----LFCCAT------- 810
T G T LH A +D LLG A + + L A
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61
Query: 811 -ILVKNGAEID 820
L GA +
Sbjct: 62 EKLYAAGAGVL 72
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 262 bits (672), Expect = 2e-81
Identities = 74/380 (19%), Positives = 129/380 (33%), Gaps = 90/380 (23%)
Query: 425 RGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGAS 484
+ + L + + + +D A G+ + LL+ GA
Sbjct: 7 KQKRNEQLKRWIGSETDLEPPVVKRKKTKVKF-DDGAVFLAACSSGDTEEVLRLLERGAD 65
Query: 485 VDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
++ DG TALH + + ++ L E+GA+I +G+ PLH AA G + IA+ L
Sbjct: 66 INYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYL 125
Query: 545 LQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQ 604
+ + GA + A +G TPL +A + ++ Q + + Q
Sbjct: 126 ISQ-----------------GAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNR------Q 162
Query: 605 GKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYN 664
G + ++ L + AK+G T LH+AA K
Sbjct: 163 GVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAK------------- 209
Query: 665 AKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVAT 724
G+T++ LLI+ V+ + +G
Sbjct: 210 --------------------GYTEVLKLLIQARYDVNIKDYDG----------------- 232
Query: 725 ITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQG 784
+TPLH A+H+G+ R LVEN ++ A +G T A +
Sbjct: 233 ----------------WTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDI 276
Query: 785 RVLIIDLLLGAGAQPNATTN 804
+ +L +
Sbjct: 277 LGYLEELQKKQNLLHSEKRE 296
Score = 261 bits (670), Expect = 5e-81
Identities = 68/321 (21%), Positives = 118/321 (36%), Gaps = 41/321 (12%)
Query: 229 TALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLL 288
+ G + + ++ + + AC LL
Sbjct: 10 RNEQLKRWIGSETDLEPPVVKRKKTKVKF-DDGAVFLAACSSG--------DTEEVLRLL 60
Query: 289 DRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMN 348
+R AD N ++G T LH AC + +V+ L++ GA+I G PLH A+ G ++
Sbjct: 61 ERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLD 120
Query: 349 IAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVAS 408
IA +L+ GA G+TPL +A ++++ +
Sbjct: 121 IAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQG----------------- 163
Query: 409 RLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASR 468
V E R D + L + A+ T LHVA+
Sbjct: 164 ---------------VDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAA 208
Query: 469 LGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTP 528
G ++ LL+Q V+ DG+T LH +A G++E IL E+ + A K G T
Sbjct: 209 KGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTA 268
Query: 529 LHLAAKYGRMKIAQMLLQKDA 549
+A + + ++ +++
Sbjct: 269 FDVADEDILGYLEELQKKQNL 289
Score = 260 bits (668), Expect = 8e-81
Identities = 61/341 (17%), Positives = 111/341 (32%), Gaps = 50/341 (14%)
Query: 366 RGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVR 425
+ + L + + +
Sbjct: 7 KQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFD--------------------------- 39
Query: 426 GETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASV 485
A + T+ V LL GA ++ + T LH A N D+ L+++GA++
Sbjct: 40 DGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANI 99
Query: 486 DAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLL 545
+ P +G+ LH +A G ++A L GA + A +G TPL +A + ++ Q +
Sbjct: 100 NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEV 159
Query: 546 QKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQG 605
+ + Q L
Sbjct: 160 NRQG-----------------------VDIEAARKEEERIMLRDARQWLNSGHINDVRHA 196
Query: 606 KNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNA 665
K+G T LHVA+ + V LL+ + +G+TPLH AA + + L+E
Sbjct: 197 KSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLC 256
Query: 666 KPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKN 706
A +K G T ++ ++ + L + S + +
Sbjct: 257 DMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKREK 297
Score = 257 bits (660), Expect = 1e-79
Identities = 66/286 (23%), Positives = 106/286 (37%), Gaps = 15/286 (5%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
G E + V V+ + A V LL +G + A +T L
Sbjct: 19 GSETDLEPPVVKRKKTKVKF-DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTAL 77
Query: 133 HVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTK 192
H AC V MV+ L+ GANI +G PLH AA G+ ++ + LI +GA + +
Sbjct: 78 HQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNS 137
Query: 193 NGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKAD 252
G PL +A + E + + VD A + L +
Sbjct: 138 EGDTPLDIAEEEAMEELLQNEVNRQG------VDIEAARKEEERIMLRDARQWLNSGHIN 191
Query: 253 PNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKN 312
A +G T LH+A + + V K L+ + D N + +G+TPLH A
Sbjct: 192 DVRHAKSGGTALHVA--------AAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWG 243
Query: 313 RYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGA 358
+ + +L++ + A + G T VA + +
Sbjct: 244 KEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNL 289
Score = 255 bits (655), Expect = 6e-79
Identities = 58/315 (18%), Positives = 108/315 (34%), Gaps = 16/315 (5%)
Query: 88 INVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELL 147
+ + + + + + K + + AC G V L
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDG-AVFLAACSSGDTEEVLRL 59
Query: 148 ISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHE 207
+ +GA+I DGLT LH A + +++ L+E GA + G PLH A+ +
Sbjct: 60 LERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYL 119
Query: 208 AATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIA 267
LI GA V + + T L +A + + ++R+ +
Sbjct: 120 DIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGV------DIEAARKEE 173
Query: 268 CKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASI 327
+ L + A +G T LH+A K +V++LL++ +
Sbjct: 174 --------ERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV 225
Query: 328 AATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILL 387
G TPLH A+ G L++ + G+T +A + +
Sbjct: 226 NIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQK 285
Query: 388 RNGASVDARAREDQT 402
+ + RE ++
Sbjct: 286 KQNLLHSEK-REKKS 299
Score = 240 bits (615), Expect = 4e-73
Identities = 56/282 (19%), Positives = 100/282 (35%), Gaps = 24/282 (8%)
Query: 523 KKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLA 582
K L G + + K G A
Sbjct: 6 AKQKRNEQLKRWIGSETDLEPPVVK-----------------RKKTKVKFDDG-AVFLAA 47
Query: 583 AKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGY 642
G + LL++ A ++ +G+T LH A D+ ++ L++ GA+ + G+
Sbjct: 48 CSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGW 107
Query: 643 TPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSH 702
PLH AA +DIA L+ A A + G TPL ++ +E ++ + +
Sbjct: 108 IPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEV------NR 161
Query: 703 QAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVEN 762
Q + + + K+G T LH+A+ G +++ L++
Sbjct: 162 QGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA 221
Query: 763 GANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTN 804
+VN G+TPLH A+ G+ +L+ A
Sbjct: 222 RYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNK 263
Score = 210 bits (536), Expect = 7e-62
Identities = 67/335 (20%), Positives = 103/335 (30%), Gaps = 91/335 (27%)
Query: 2 QQGHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCKAAALLLEVSFSNTKLEVSLSN 57
G V LLE + L ALH A
Sbjct: 49 SSGDTEEVLRLLERGADINYANVDGLTALHQACID------------------------- 83
Query: 58 TKLEVSLSNTKFEATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSK 117
++ K LV+NGA IN G+ PL+ AA +
Sbjct: 84 ---------------DNVDMVKFLVENGANINQPDNEGWIPLHAAASCGY---------- 118
Query: 118 GGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVI 177
+ + E LIS+GA++ A +G TPL A + ++
Sbjct: 119 -----------------------LDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELL 155
Query: 178 DILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHC 237
+ + + A + A + L TALHVA+
Sbjct: 156 QNEVNRQGV------DIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAK 209
Query: 238 GHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNAR 297
G+ V K L+ + D N + +G+TPLH A +H + L++ D A
Sbjct: 210 GYTEVLKLLIQARYDVNIKDYDGWTPLHAA--------AHWGKEEACRILVENLCDMEAV 261
Query: 298 ALNGFTPLHIACKKNRYKVVELLLKYGASIAATTE 332
G T +A + + EL K + E
Sbjct: 262 NKVGQTAFDVADEDILGYLEELQKKQNLLHSEKRE 296
Score = 136 bits (346), Expect = 6e-36
Identities = 31/200 (15%), Positives = 66/200 (33%), Gaps = 25/200 (12%)
Query: 2 QQGHDRVVAVLLEN-------DTKGKVKLPALHIAAKKDDCKAAALLLEVSFSNTKLEVS 54
G+ + L+ +++G L IA ++ + + +
Sbjct: 115 SCGYLDIAEYLISQGAHVGAVNSEGDT---PLDIAEEEAMEELLQNEVNRQGVDI----- 166
Query: 55 LSNTKLEVSLSNTKFEAT-GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRY 113
K E + + L + +G T L++AA + + V++
Sbjct: 167 --EAAR-------KEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKL 217
Query: 114 LLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGH 173
L+ + + TPLH A WGK +L+ ++EA + G T A
Sbjct: 218 LIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDIL 277
Query: 174 DNVIDILIEKGAALYSKTKN 193
+ ++ ++ K +
Sbjct: 278 GYLEELQKKQNLLHSEKREK 297
Score = 124 bits (313), Expect = 2e-31
Identities = 33/137 (24%), Positives = 50/137 (36%), Gaps = 1/137 (0%)
Query: 668 NAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITM 727
L G + + +G +
Sbjct: 2 KMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDG-AVFLAACSSGDTEEVLRLL 60
Query: 728 FNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVL 787
GA+I+ G T LH A ++MV++LVENGAN+N N G+ PLH A+ G +
Sbjct: 61 ERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLD 120
Query: 788 IIDLLLGAGAQPNATTN 804
I + L+ GA A +
Sbjct: 121 IAEYLISQGAHVGAVNS 137
Score = 29.0 bits (66), Expect = 5.5
Identities = 7/67 (10%), Positives = 17/67 (25%), Gaps = 12/67 (17%)
Query: 766 VNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTN-----LFCC-------ATILV 813
+ G ++ + + + L C L+
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLL 60
Query: 814 KNGAEID 820
+ GA+I+
Sbjct: 61 ERGADIN 67
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 261 bits (669), Expect = 4e-81
Identities = 42/274 (15%), Positives = 93/274 (33%), Gaps = 21/274 (7%)
Query: 71 ATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNIT 130
T + + K + + ++G + Y A +N+ +V LL+ G + N
Sbjct: 8 NTWKSKQLKSFL-SSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKN--LLENEF 64
Query: 131 PLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSK 190
PLH A +V++L+ G + G T L+ A SG+ + + ++K L
Sbjct: 65 PLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFY 124
Query: 191 TKNGLA-PLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDR 249
K G + A + + + L+ +H+ GHV + LLD
Sbjct: 125 GKTGWKTSFYHAVMLNDVSIVSYFLSEIP-STFDLAILLSCIHITIKNGHVDMMILLLDY 183
Query: 250 KADPNARALNGFTP-LHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIA 308
N F P + +A + + + L + +
Sbjct: 184 MTSTNTNNSLLFIPDIKLAIDN--------KDIEMLQALFKYDINIY-------SANLEN 228
Query: 309 CKKNRYKVVELLLKYGASIAATTESGLTPLHVAS 342
+ ++ +++++ + + + + +
Sbjct: 229 VLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNN 262
Score = 242 bits (620), Expect = 5e-74
Identities = 46/336 (13%), Positives = 98/336 (29%), Gaps = 65/336 (19%)
Query: 460 QTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASIT 519
+ + L G++A + + + + L +GA
Sbjct: 2 MDLSRINT--WKSKQLKSFLS-SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKN 58
Query: 520 ATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPL 579
+ PLH AA KI ++LL G + KG T L
Sbjct: 59 L--LENEFPLHQAATLEDTKIVKILLFS-----------------GLDDSQFDDKGNTAL 99
Query: 580 HLAAKYGRMKIAQMLLQKDAPVDSQGKNGV-TPLHVASHYDHQNVALLLLDRGASPHAVA 638
+ A G M+ ++ ++K+ + GK G T + A + ++ L S +
Sbjct: 100 YYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL- 158
Query: 639 KNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTP-LHLSAQEGHTDMSSLLIEHG 697
+ +HI K +D+ LL+Y N + F P + L+ +M L ++
Sbjct: 159 AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYD 218
Query: 698 ATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVR 757
+ + + +
Sbjct: 219 INIY----------------------------------------SANLENVLLDDAEIAK 238
Query: 758 YLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLL 793
++E + + + + ++ ++ + L
Sbjct: 239 MIIEKHVEYKSDSYTKDLDIVKNNKLDEIISKNKEL 274
Score = 230 bits (589), Expect = 1e-69
Identities = 47/338 (13%), Positives = 95/338 (28%), Gaps = 64/338 (18%)
Query: 260 GFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVEL 319
G I K++ D ++G + + A N ++V
Sbjct: 1 GMDLSRINTWKSK-----------QLKSFLSSKDTFKADVHGHSASYYAIADNNVRLVCT 49
Query: 320 LLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQ 379
LL GA PLH A+ + I LL +G +G T L+ A +
Sbjct: 50 LLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGN 107
Query: 380 TDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQT 439
V++ ++ + + +T + A N
Sbjct: 108 MQTVKLFVKKNWRLMFYGKTG-------------------------WKTSFYHAVMLNDV 142
Query: 440 DIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYT-ALHI 498
IV L + +H+ + G+ D+ LLL + S + + + +
Sbjct: 143 SIVSYFLSEIP-STFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKL 201
Query: 499 SAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVA 558
+ E+ L + +I + +IA+M+++K
Sbjct: 202 AIDNKDIEMLQALFKYDINIY-------SANLENVLLDDAEIAKMIIEK----------- 243
Query: 559 SILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQ 596
+ + + K + L+
Sbjct: 244 ------HVEYKSDSYTKDLDIVKNNKLDEIISKNKELR 275
Score = 227 bits (581), Expect = 2e-68
Identities = 45/334 (13%), Positives = 94/334 (28%), Gaps = 58/334 (17%)
Query: 367 GETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRG 426
G ++ ++ L + G
Sbjct: 1 GMDLSR--INTWKSKQLKSFL-SSKDTFKADVH--------------------------G 31
Query: 427 ETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVD 486
+ + A N +V LL GA + E++ PLH A+ L + I +LL G
Sbjct: 32 HSASYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQAATLEDTKIVKILLFSGLDDS 89
Query: 487 APTKDGYTALHISAKEGQDEVASILTESGASITATTKKGF-TPLHLAAKYGRMKIAQMLL 545
G TAL+ + G + + + + K G+ T + A + I L
Sbjct: 90 QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFL 149
Query: 546 QKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQG 605
+ + +H+ K G + + +LL ++
Sbjct: 150 SEIPST------------------FDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNN 191
Query: 606 KNGVTP-LHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYN 664
P + +A + L N Y+ + +IA ++E +
Sbjct: 192 SLLFIPDIKLAIDNKDIEMLQALFKYDI-------NIYSANLENVLLDDAEIAKMIIEKH 244
Query: 665 AKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGA 698
+ ++S + + + + +
Sbjct: 245 VEYKSDSYTKDLDIVKNNKLDEIISKNKELRLMY 278
Score = 223 bits (571), Expect = 6e-67
Identities = 38/345 (11%), Positives = 92/345 (26%), Gaps = 80/345 (23%)
Query: 161 GLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGV 220
G+ + + + + +G + + A ++ L+ GA
Sbjct: 1 GMDLSR--INTWKSKQLKSFL-SSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK 57
Query: 221 DEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNH 280
+ ++ LH A+ ++ K LL D + G T L+ A +
Sbjct: 58 NL--LENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDS--------GN 107
Query: 281 VWVAKTLLDRKADPNARALNGF-TPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLH 339
+ K + + G+ T + A N +V L S
Sbjct: 108 MQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAI------- 160
Query: 340 VASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARARE 399
+ +H+ + D++ +LL S +
Sbjct: 161 ---------------------------LLSCIHITIKNGHVDMMILLLDYMTSTNTNNSL 193
Query: 400 DQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARARED 459
P + LA ++++ L + ++
Sbjct: 194 LFIPD-------------------------IKLAIDNKDIEMLQALFKYDINIY------ 222
Query: 460 QTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQ 504
+ L + +IA ++++ + + + + K +
Sbjct: 223 -SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDE 266
Score = 221 bits (566), Expect = 2e-66
Identities = 44/314 (14%), Positives = 91/314 (28%), Gaps = 63/314 (20%)
Query: 492 GYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPV 551
G I+ + ++ S L S G + + A +++ LL A
Sbjct: 1 GMDLSRINTWK-SKQLKSFL--SSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK 57
Query: 552 DSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTP 611
+ + PLH AA KI ++LL G T
Sbjct: 58 N-------------------LLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTA 98
Query: 612 LHVASHYDHQNVALLLLDRGASPHAVAKNGY-TPLHIAAKKNQMDIATTLLEYNAKPNAE 670
L+ A + L + + K G+ T + A N + I + L +
Sbjct: 99 LYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIP-STFD 157
Query: 671 SKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNG 730
+ +H++ + GH DM LL+++ + + P
Sbjct: 158 LAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPD------------------- 198
Query: 731 AEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIID 790
+ +A + M++ L + N+ + + I
Sbjct: 199 -------------IKLAIDNKDIEMLQALFKYDINIY-------SANLENVLLDDAEIAK 238
Query: 791 LLLGAGAQPNATTN 804
+++ + + +
Sbjct: 239 MIIEKHVEYKSDSY 252
Score = 209 bits (535), Expect = 7e-62
Identities = 38/254 (14%), Positives = 81/254 (31%), Gaps = 14/254 (5%)
Query: 575 GFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASP 634
G + + K + L +G + + A ++ + LL+ GA
Sbjct: 1 GMDLSRIN--TWKSKQLKSFLSS-KDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK 57
Query: 635 HAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLI 694
+ PLH AA I LL + G T L+ + G+ L +
Sbjct: 58 NL--LENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFV 115
Query: 695 EHGATVSHQAKNGL-TPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQL 753
+ + K G T + + V++ + + + +HI G +
Sbjct: 116 KKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF-DLAILLSCIHITIKNGHV 174
Query: 754 NMVRYLVENGANVNATTNLGYTP-LHQASQQGRVLIIDLLLGAGAQPNATTNLFCC---- 808
+M+ L++ + N +L + P + A + ++ L +
Sbjct: 175 DMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANLENVLLDDA 234
Query: 809 --ATILVKNGAEID 820
A ++++ E
Sbjct: 235 EIAKMIIEKHVEYK 248
Score = 196 bits (501), Expect = 4e-57
Identities = 35/278 (12%), Positives = 90/278 (32%), Gaps = 22/278 (7%)
Query: 4 GHDRVVAVLLEN---DTKGKVKLPALHIAAKKDDCKAAALLLEVSFSNTKLEVSLSNTKL 60
+ + L + A + A ++ + LL + + + L
Sbjct: 10 WKSKQLKSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLN---AGALKNLLENEFPL 66
Query: 61 EVSLSNTKFEATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGN 120
+ + ++ KIL+ +G + G T LY A + V+ + K
Sbjct: 67 HQAATL------EDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR 120
Query: 121 QTLATEHNI-TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDI 179
+ T + A V++V +S+ + L+ +H ++GH +++ +
Sbjct: 121 LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF-DLAILLSCIHITIKNGHVDMMIL 179
Query: 180 LIEKGAALYSKTKNGLAP-LHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCG 238
L++ + + P + +A + L + + +A
Sbjct: 180 LLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY-------SANLENVLLD 232
Query: 239 HVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSS 276
+AK ++++ + + + + K + S
Sbjct: 233 DAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEIISK 270
Score = 156 bits (398), Expect = 6e-43
Identities = 33/257 (12%), Positives = 65/257 (25%), Gaps = 54/257 (21%)
Query: 2 QQGHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCKAAALLLEVSFSNTKLEVSLSN 57
++V +LL + AL+ A
Sbjct: 71 TLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDS------------------------- 105
Query: 58 TKLEVSLSNTKFEATGQEEVAKILVDNGATINVQSLNGF-TPLYMAAQENHDGVVRYLLS 116
G + K+ V + G+ T Y A N +V Y LS
Sbjct: 106 ---------------GNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLS 150
Query: 117 KGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTP-LHCAARSGHDN 175
+ + T ++ +H+ K G V M+ LL+ + P + A +
Sbjct: 151 EIPS-TFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIE 209
Query: 176 VIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVAS 235
++ L + N + D +++I + + +
Sbjct: 210 MLQALFKYDI-------NIYSANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNN 262
Query: 236 HCGHVRVAKTLLDRKAD 252
+ L
Sbjct: 263 KLDEIISKNKELRLMYV 279
Score = 56.8 bits (138), Expect = 8e-09
Identities = 12/163 (7%), Positives = 35/163 (21%), Gaps = 56/163 (34%)
Query: 2 QQGHDRVVAVLLEN-------DTKGKVKLPALHIAAKKDDCKAAALLLEVSFSNTKLEVS 54
+ GH ++ +LL+ ++ + P + +A
Sbjct: 170 KNGHVDMMILLLDYMTSTNTNNSLLFI--PDIKLAIDN---------------------- 205
Query: 55 LSNTKLEVSLSNTKFEATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYL 114
E+ + L I + + + + +
Sbjct: 206 ------------------KDIEMLQALFKYDINIY-------SANLENVLLDDAEIAKMI 240
Query: 115 LSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAK 157
+ K + + K ++ + K
Sbjct: 241 IEKHVEYKSDSYTKDLDIVKNNKLDEIISKNKELRLMYVNCVK 283
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 260 bits (667), Expect = 9e-81
Identities = 62/333 (18%), Positives = 117/333 (35%), Gaps = 58/333 (17%)
Query: 373 LAARANQTDIVRILLRNGASVDAR-----AREDQTPLHVASRLRRFSSASQSALTRVRGE 427
+ + + L+ G+ + + + P ++ V
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDW 60
Query: 428 TPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDA 487
+P+H AA +R L+ G +V+ + +PLH A G+ +LL+HGA V+
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 120
Query: 488 PTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQK 547
T D +T L + G + ++L + GAS+
Sbjct: 121 VTADWHTPLFNACVSGSWDCVNLLLQHGASVQP--------------------------- 153
Query: 548 DAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKN 607
+P+H AA+ G ++ L+ +D + +
Sbjct: 154 ------------------------ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISH 189
Query: 608 GVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKP 667
TPL++A + LL+ GA + K +PLH + ++A L+++ A
Sbjct: 190 LGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADT 248
Query: 668 NAESKAGFTPLHLSAQEGHTDMSSLLIEHGATV 700
A++ G P+ L E L GA++
Sbjct: 249 QAKNAEGKRPVELVPPESPLAQ-LFLEREGASL 280
Score = 257 bits (660), Expect = 9e-80
Identities = 69/320 (21%), Positives = 120/320 (37%), Gaps = 50/320 (15%)
Query: 233 VASHCGHVRVAKTLLDRKADPNAR-----ALNGFTPLHIACKKNRYKSSHCNHVWVAKTL 287
+ S H + L+ R + + ++G P S+
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPL-------- 52
Query: 288 LDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCM 347
A++ ++P+H A + L+ G ++ T ++PLH A G +
Sbjct: 53 -------MGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHL 105
Query: 348 NIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVA 407
+ LL+ GA + T TPL A + D V +LL++GASV +
Sbjct: 106 SCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES---------- 155
Query: 408 SRLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVAS 467
+P+H AAR + V L+ G ++D + TPL++A
Sbjct: 156 -----------------DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLAC 198
Query: 468 RLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFT 527
LL+ GA V+ K + LH + +E+A +L + GA A +G
Sbjct: 199 ENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKR 257
Query: 528 PLHLAAKYGRMKIAQMLLQK 547
P+ L +AQ+ L++
Sbjct: 258 PVELVPPES--PLAQLFLER 275
Score = 257 bits (658), Expect = 1e-79
Identities = 65/290 (22%), Positives = 117/290 (40%), Gaps = 42/290 (14%)
Query: 73 GQEEVAKILVDNGATIN-------------------------------VQSLNGFTPLYM 101
+ LV G+ + +++ ++P++
Sbjct: 6 HHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHE 65
Query: 102 AAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDG 161
AA H +R L+S+G + T +++PLH AC G ++ V++L+ GA + T D
Sbjct: 66 AAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADW 125
Query: 162 LTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVD 221
TPL A SG + +++L++ GA++ + +P+H A++ H LI +G +D
Sbjct: 126 HTPLFNACVSGSWDCVNLLLQHGASV-QPESDLASPIHEAARRGHVECVNSLIAYGGNID 184
Query: 222 EITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHV 281
T L++A K LL+ AD N +PLH +
Sbjct: 185 HKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRT--------ASE 235
Query: 282 WVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATT 331
+A L+D AD A+ G P+ + ++ L + GAS+
Sbjct: 236 ELACLLMDFGADTQAKNAEGKRPVELVPPES-PLAQLFLEREGASLPKPK 284
Score = 255 bits (655), Expect = 5e-79
Identities = 67/339 (19%), Positives = 119/339 (35%), Gaps = 55/339 (16%)
Query: 465 VASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKK 524
+ S + +S L+ G+ + + DG
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMAS--MDGKQ--------------------------GGMD 32
Query: 525 GFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAK 584
G P G ++ L+ ++P+H AA
Sbjct: 33 GSKPAGPRDFPGIRLLSNPLMGDA------------------------VSDWSPMHEAAI 68
Query: 585 YGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTP 644
+G + L+ + V+ + V+PLH A H + +LL GA + V + +TP
Sbjct: 69 HGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTP 128
Query: 645 LHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQA 704
L A D LL++ A ES +P+H +A+ GH + + LI +G + H+
Sbjct: 129 LFNACVSGSWDCVNLLLQHGASVQPESD-LASPIHEAARRGHVECVNSLIAYGGNIDHKI 187
Query: 705 KNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGA 764
+ TPL+L + + + +GA+++ K +PLH + L++ GA
Sbjct: 188 SHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVVRTASEELACLLMDFGA 246
Query: 765 NVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATT 803
+ A G P+ + L L GA
Sbjct: 247 DTQAKNAEGKRPVELVPPESP-LAQLFLEREGASLPKPK 284
Score = 200 bits (510), Expect = 2e-58
Identities = 51/261 (19%), Positives = 93/261 (35%), Gaps = 25/261 (9%)
Query: 581 LAAKYGRMKIAQMLLQKDAPVDSQGKN-----GVTPLHVASHYDHQNVALLLLDRGASPH 635
+ + + + L+ + + + S G P LL
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGI-----RLLSNPLMGD 55
Query: 636 AVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIE 695
A + ++P+H AA L+ N + +PLH + GH +L++
Sbjct: 56 A--VSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLK 113
Query: 696 HGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNM 755
HGA V+ + TPL + + + +GA + P +P+H A+ G +
Sbjct: 114 HGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVEC 172
Query: 756 VRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTN----LFC---- 807
V L+ G N++ + TPL+ A + + + LL +GA N L
Sbjct: 173 VNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVVRT 232
Query: 808 ----CATILVKNGAEIDPVTK 824
A +L+ GA+
Sbjct: 233 ASEELACLLMDFGADTQAKNA 253
Score = 183 bits (466), Expect = 3e-52
Identities = 51/258 (19%), Positives = 82/258 (31%), Gaps = 47/258 (18%)
Query: 2 QQGHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCKAAALLLEVSFSNTKLEVSLSN 57
GH + L+ + + LH A
Sbjct: 68 IHGHQLSLRNLISQGWAVNIITADHVSPLHEACLG------------------------- 102
Query: 58 TKLEVSLSNTKFEATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSK 117
G KIL+ +GA +N + + TPL+ A V LL
Sbjct: 103 ---------------GHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQH 147
Query: 118 GGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVI 177
G + +P+H A + G V V LI+ G NI+ K TPL+ A + +
Sbjct: 148 GAS-VQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACV 206
Query: 178 DILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHC 237
L+E GA + ++ K +PLH + E +L+ GA + + +
Sbjct: 207 KKLLESGADV-NQGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPE 265
Query: 238 GHVRVAKTLLDRKADPNA 255
+ L A
Sbjct: 266 SPL-AQLFLEREGASLPK 282
Score = 87.9 bits (219), Expect = 3e-19
Identities = 25/161 (15%), Positives = 49/161 (30%), Gaps = 47/161 (29%)
Query: 2 QQGHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCKAAALLLEVSFSNTKLEVSLSN 57
++GH V L+ D K L++A +
Sbjct: 166 RRGHVECVNSLIAYGGNIDHKISHLGTPLYLACEN------------------------- 200
Query: 58 TKLEVSLSNTKFEATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSK 117
Q K L+++GA +N Q +PL+ + + + L+
Sbjct: 201 ---------------QQRACVKKLLESGADVN-QGKGQDSPLHAVVRTASEELACLLMDF 244
Query: 118 GGNQTLATEHNITPLHVACKWGKVAMVELLISKGANI-EAK 157
G + P+ + +A L +GA++ + K
Sbjct: 245 GADTQAKNAEGKRPVELVPPESPLA-QLFLEREGASLPKPK 284
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 252 bits (647), Expect = 1e-78
Identities = 71/277 (25%), Positives = 114/277 (41%), Gaps = 48/277 (17%)
Query: 124 ATEHNITPLHVACKWGKVAMVELLIS----KGANIEAKTRDGLTPLHCAARSGHDNVIDI 179
A E TPLH+A G + V L++ G ++ TPLH A + +V+ +
Sbjct: 5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRL 64
Query: 180 LIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAG----VDEITVDYLTALHVAS 235
L+ GA+ + ++G H+A + R L+ A ++ D LTALHVA
Sbjct: 65 LVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAV 124
Query: 236 HCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPN 295
+ + LL+R AD +A +
Sbjct: 125 NTECQETVQLLLERGADIDAVDIK------------------------------------ 148
Query: 296 ARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQ 355
+G +PL A + N +V+LLL++GA++ A SG + LH AS G + + L++
Sbjct: 149 ----SGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVR 204
Query: 356 AGAAPDTATVRGETPLHLAARANQTDIVRILLRNGAS 392
+GA +TPL +A DI+R AS
Sbjct: 205 SGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPAS 241
Score = 236 bits (604), Expect = 2e-72
Identities = 66/239 (27%), Positives = 107/239 (44%), Gaps = 9/239 (3%)
Query: 568 ITATTKKGFTPLHLAAKYGRMKIAQMLL----QKDAPVDSQGKNGVTPLHVASHYDHQNV 623
T + G TPLH+A G + L+ Q +D TPLH+A +V
Sbjct: 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61
Query: 624 ALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKP----NAESKAGFTPLH 679
LL+ GASP A+ ++G T H+A + LL+ A A + G T LH
Sbjct: 62 VRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALH 121
Query: 680 LSAQEGHTDMSSLLIEHGATVSHQ-AKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTK 738
++ + LL+E GA + K+G +PL + + +++ + + +GA ++
Sbjct: 122 VAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMY 181
Query: 739 AGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGA 797
+G + LH AS G L +VR LV +GA+ + TPL A + + I+ A
Sbjct: 182 SGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240
Score = 233 bits (596), Expect = 3e-71
Identities = 63/244 (25%), Positives = 102/244 (41%), Gaps = 18/244 (7%)
Query: 460 QTPLHVASRLGNGDIA----SLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESG 515
TPLH+A GN +L Q G +D T LH++ V +L +G
Sbjct: 10 DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 69
Query: 516 ASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKG 575
AS A + G T HLA ++ + LL AP + A G
Sbjct: 70 ASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAP-------------GTLDLEARNYDG 116
Query: 576 FTPLHLAAKYGRMKIAQMLLQKDAPVDSQ-GKNGVTPLHVASHYDHQNVALLLLDRGASP 634
T LH+A + Q+LL++ A +D+ K+G +PL A + ++ LLL GA+
Sbjct: 117 LTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV 176
Query: 635 HAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLI 694
+A +G + LH A+ + + + TL+ A + ++ TPL ++ D+
Sbjct: 177 NAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKA 236
Query: 695 EHGA 698
A
Sbjct: 237 TRPA 240
Score = 230 bits (589), Expect = 4e-70
Identities = 60/253 (23%), Positives = 103/253 (40%), Gaps = 18/253 (7%)
Query: 518 ITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFT 577
T + G TPLH+A G + L+ ++ + G + T
Sbjct: 2 ATRADEDGDTPLHIAVVQGNLPAVHRLV-------------NLFQQGGRELDIYNNLRQT 48
Query: 578 PLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPH-- 635
PLHLA + ++L+ A + ++G T H+A + LLD A
Sbjct: 49 PLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLD 108
Query: 636 --AVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNA-ESKAGFTPLHLSAQEGHTDMSSL 692
A +G T LH+A + LLE A +A + K+G +PL + + M L
Sbjct: 109 LEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQL 168
Query: 693 LIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQ 752
L++HGA V+ Q +G + LH + + + + +GA+ TPL +A
Sbjct: 169 LLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRV 228
Query: 753 LNMVRYLVENGAN 765
++++R A+
Sbjct: 229 IDILRGKATRPAS 241
Score = 228 bits (584), Expect = 2e-69
Identities = 67/248 (27%), Positives = 103/248 (41%), Gaps = 24/248 (9%)
Query: 426 GETPLHLAARANQTDIVRILL----RNGASVDARAREDQTPLHVASRLGNGDIASLLLQH 481
G+TPLH+A V L+ + G +D QTPLH+A + LL+
Sbjct: 9 GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 68
Query: 482 GASVDAPTKDGYTALHISAKEGQDEVASILTESGAS----ITATTKKGFTPLHLAAKYGR 537
GAS A + G TA H++ + L +S A + A G T LH+A
Sbjct: 69 GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC 128
Query: 538 MKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQK 597
+ Q+LL++ A +D+ K G +PL A + + + Q+LLQ
Sbjct: 129 QETVQLLLERGADIDAV----------------DIKSGRSPLIHAVENNSLSMVQLLLQH 172
Query: 598 DAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIA 657
A V++Q +G + LH AS + L+ GA + TPL +A + +DI
Sbjct: 173 GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDIL 232
Query: 658 TTLLEYNA 665
A
Sbjct: 233 RGKATRPA 240
Score = 223 bits (572), Expect = 9e-68
Identities = 64/272 (23%), Positives = 100/272 (36%), Gaps = 41/272 (15%)
Query: 254 NARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRK----ADPNARALNGFTPLHIAC 309
+G TPLHIA + ++ L++ + + TPLH+A
Sbjct: 3 TRADEDGDTPLHIAVVQG--------NLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAV 54
Query: 310 KKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAP----DTATV 365
VV LL+ GAS A G T H+A LL + A +
Sbjct: 55 ITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNY 114
Query: 366 RGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVR 425
G T LH+A + V++LL GA +DA +
Sbjct: 115 DGLTALHVAVNTECQETVQLLLERGADIDAVDIKS------------------------- 149
Query: 426 GETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASV 485
G +PL A N +V++LL++GA+V+A+ + LH AS G + L++ GA
Sbjct: 150 GRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADS 209
Query: 486 DAPTKDGYTALHISAKEGQDEVASILTESGAS 517
T L ++ ++ AS
Sbjct: 210 SLKNCHNDTPLMVARSRRVIDILRGKATRPAS 241
Score = 211 bits (541), Expect = 3e-63
Identities = 61/291 (20%), Positives = 97/291 (33%), Gaps = 75/291 (25%)
Query: 73 GQEEVAKILVD----NGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHN 128
G LV+ G +++ + TPL++A V
Sbjct: 20 GNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV------------------ 61
Query: 129 ITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALY 188
V LL++ GA+ A R G T H A + L++ A
Sbjct: 62 ---------------VRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAP-- 104
Query: 189 SKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLD 248
++ D LTALHVA + + LL+
Sbjct: 105 ---------------------------GTLDLEARNYDGLTALHVAVNTECQETVQLLLE 137
Query: 249 RKADPNARALN-GFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHI 307
R AD +A + G +PL A + N + + + LL A+ NA+ +G + LH
Sbjct: 138 RGADIDAVDIKSGRSPLIHAVEN--------NSLSMVQLLLQHGANVNAQMYSGSSALHS 189
Query: 308 ACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGA 358
A + +V L++ GA + TPL VA ++I A
Sbjct: 190 ASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240
Score = 140 bits (355), Expect = 1e-37
Identities = 38/197 (19%), Positives = 65/197 (32%), Gaps = 24/197 (12%)
Query: 2 QQGHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCKAAALLLEVSFSNTKLEVSLSN 57
VV +L+ + A H+A + LL +
Sbjct: 55 ITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALL----DSAAPGTLDLE 110
Query: 58 TKLEVSLSNTKFEAT--------GQEEVAKILVDNGATINVQSLN-GFTPLYMAAQENHD 108
+ T +E ++L++ GA I+ + G +PL A + N
Sbjct: 111 AR-------NYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSL 163
Query: 109 GVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCA 168
+V+ LL G N + LH A G + +V L+ GA+ K TPL A
Sbjct: 164 SMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVA 223
Query: 169 ARSGHDNVIDILIEKGA 185
+++ + A
Sbjct: 224 RSRRVIDILRGKATRPA 240
Score = 102 bits (258), Expect = 8e-25
Identities = 36/170 (21%), Positives = 55/170 (32%), Gaps = 46/170 (27%)
Query: 668 NAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITM 727
+ G TPLH++ +G+ L+ +
Sbjct: 3 TRADEDGDTPLHIAVVQGNLPAVHRLVN-----------------------------LFQ 33
Query: 728 FNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVL 787
G E+D TPLH+A ++VR LV GA+ A G T H A +
Sbjct: 34 QGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPT 93
Query: 788 IIDLLLGAGAQP----NATTN-----LFC--------CATILVKNGAEID 820
+ LL + A A L +L++ GA+ID
Sbjct: 94 CLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADID 143
Score = 97.9 bits (245), Expect = 5e-23
Identities = 33/168 (19%), Positives = 66/168 (39%), Gaps = 30/168 (17%)
Query: 2 QQGHDRVVAVLLEN--------DTKGKVKLPALHIAAKKDDCKAAALLLEVSFSNTKLEV 53
+ + LL++ + + L ALH+A + + LLLE
Sbjct: 88 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLER--------- 138
Query: 54 SLSNTKLEVSLSNTKFEAT--------GQEEVAKILVDNGATINVQSLNGFTPLYMAAQE 105
++ + K + + ++L+ +GA +N Q +G + L+ A+
Sbjct: 139 -----GADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGR 193
Query: 106 NHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGAN 153
+VR L+ G + +L HN TPL VA + ++ ++ A+
Sbjct: 194 GLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPAS 241
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 253 bits (648), Expect = 5e-78
Identities = 82/278 (29%), Positives = 113/278 (40%), Gaps = 17/278 (6%)
Query: 94 NGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHN-ITPLHVACKWGKVAMVELLISKGA 152
L A Q +V+ LL G N E TPLH A + + +VELL+ GA
Sbjct: 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63
Query: 153 NIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRV 212
+ + ++G TP AA +G ++ + + KGA + G A+ A +
Sbjct: 64 DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF 123
Query: 213 LIYHGAGVDEITVDYL----------TALHVASHCGHVRVAKTLLDRK-ADPNARALNGF 261
L GA V+ TAL A+ GHV V K LLD AD NA G
Sbjct: 124 LYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGR 183
Query: 262 TPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLL 321
L A + + + LLD AD N R G TPL +A +K +V+ LL
Sbjct: 184 NALIHALLSS----DDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL 239
Query: 322 -KYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGA 358
+ I T G T L +A + IA L + GA
Sbjct: 240 EQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGA 277
Score = 248 bits (636), Expect = 3e-76
Identities = 82/322 (25%), Positives = 127/322 (39%), Gaps = 56/322 (17%)
Query: 363 ATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALT 422
A V L A + D+V+ LL GA+V+ + E
Sbjct: 1 AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEG---------------------- 38
Query: 423 RVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHG 482
G TPLH A + ++ DIV +LLR+GA R + TP +A+ G+ + L L G
Sbjct: 39 ---GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKG 95
Query: 483 ASVDAPTKDGYTALHISAKEGQDEVASILTESGASI----------TATTKKGFTPLHLA 532
A V+ G+TA +A G+ + L + GA++ K G T L A
Sbjct: 96 ADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDA 155
Query: 533 AKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMK--- 589
A+ G +++ ++L L E GA + A G L A
Sbjct: 156 AEKGHVEVLKIL----------------LDEMGADVNACDNMGRNALIHALLSSDDSDVE 199
Query: 590 -IAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDR-GASPHAVAKNGYTPLHI 647
I +LL A V+ +G+ G TPL +A H + LL++ + +G T L +
Sbjct: 200 AITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLL 259
Query: 648 AAKKNQMDIATTLLEYNAKPNA 669
A + IA L + A +
Sbjct: 260 AVELKLKKIAELLCKRGASTDC 281
Score = 248 bits (636), Expect = 3e-76
Identities = 82/290 (28%), Positives = 120/290 (41%), Gaps = 25/290 (8%)
Query: 124 ATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRD-GLTPLHCAARSGHDNVIDILIE 182
A + L A + V +V+ L+ GAN+ + + G TPLH A + ++++++L+
Sbjct: 1 AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60
Query: 183 KGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRV 242
GA + KNG P +A+ ++ + GA V+E TA A+ G V+
Sbjct: 61 HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKA 120
Query: 243 AKTLLDRKADPNAR----------ALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRK- 291
K L R A+ N R G T L A +K HV V K LLD
Sbjct: 121 LKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK--------GHVEVLKILLDEMG 172
Query: 292 ADPNARALNGFTPLHIACKKNRYK----VVELLLKYGASIAATTESGLTPLHVASFMGCM 347
AD NA G L A + + LLL +GA + E G TPL +A +
Sbjct: 173 ADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHL 232
Query: 348 NIAIFLL-QAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDAR 396
+ LL Q + G+T L LA I +L + GAS D
Sbjct: 233 GLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG 282
Score = 246 bits (630), Expect = 2e-75
Identities = 78/345 (22%), Positives = 127/345 (36%), Gaps = 70/345 (20%)
Query: 426 GETPLHLAARANQTDIVRILLRNGASVDARARED-QTPLHVASRLGNGDIASLLLQHGAS 484
L A + D+V+ LL GA+V+ + E TPLH A ++ DI LLL+HGA
Sbjct: 5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD 64
Query: 485 VDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
K+G T ++A G ++ + GA + GFT AA YG++K + L
Sbjct: 65 PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFL 124
Query: 545 LQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKD-APVDS 603
++ A V+ + K + K G T L AA+ G +++ ++LL + A V++
Sbjct: 125 YKRGANVNLRRK-------TKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNA 177
Query: 604 QGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEY 663
G L A + + I LL++
Sbjct: 178 CDNMGRNALIHALLSSDDS-----------------------------DVEAITHLLLDH 208
Query: 664 NAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVA 723
A N + G TPL L+ ++ H + L+E
Sbjct: 209 GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ--------------------------- 241
Query: 724 TITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNA 768
EI+ G T L +A + L + GA+ +
Sbjct: 242 -----EHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC 281
Score = 244 bits (626), Expect = 6e-75
Identities = 78/303 (25%), Positives = 125/303 (41%), Gaps = 31/303 (10%)
Query: 259 NGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALN-GFTPLHIACKKNRYKVV 317
L A + V + + LL+ A+ N + G+TPLH A + +R +V
Sbjct: 4 EDNHLLIKAVQNE--------DVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIV 55
Query: 318 ELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARA 377
ELLL++GA ++G TP +A+ G + + L GA + G T AA
Sbjct: 56 ELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVY 115
Query: 378 NQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARAN 437
+ ++ L + GA+V+ R + + + G T L AA
Sbjct: 116 GKVKALKFLYKRGANVNLRRKTKEDQERLRK----------------GGATALMDAAEKG 159
Query: 438 QTDIVRILLRN-GASVDARAREDQTPLHVASRLGNGD----IASLLLQHGASVDAPTKDG 492
++++ILL GA V+A + L A + I LLL HGA V+ + G
Sbjct: 160 HVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERG 219
Query: 493 YTALHISAKEGQDEVASILTES-GASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPV 551
T L ++ ++ + L E I T G T L LA + KIA++L ++ A
Sbjct: 220 KTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAST 279
Query: 552 DSQ 554
D
Sbjct: 280 DCG 282
Score = 240 bits (614), Expect = 3e-73
Identities = 75/296 (25%), Positives = 122/296 (41%), Gaps = 32/296 (10%)
Query: 522 TKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHL 581
+ L A + + + Q LL+ A V+ Q + + G+TPLH
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEE----------------EGGWTPLHN 45
Query: 582 AAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNG 641
A + R I ++LL+ A + KNG TP +A+ + L L +GA + G
Sbjct: 46 AVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYG 105
Query: 642 YTPLHIAAKKNQMDIATTLLEYNAKPNAESK----------AGFTPLHLSAQEGHTDMSS 691
+T AA ++ L + A N K G T L +A++GH ++
Sbjct: 106 FTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLK 165
Query: 692 LLIEH-GATVSHQAKNGLTPLHLCAQE-DKVNVATITMF---NGAEIDPVTKAGFTPLHI 746
+L++ GA V+ G L D +V IT +GA+++ + G TPL +
Sbjct: 166 ILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLIL 225
Query: 747 ASHFGQLNMVRYLVEN-GANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNA 801
A L +V+ L+E +N T + G T L A + I +LL GA +
Sbjct: 226 AVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC 281
Score = 233 bits (596), Expect = 1e-70
Identities = 80/321 (24%), Positives = 124/321 (38%), Gaps = 58/321 (18%)
Query: 300 NGFTPLHIACKKNRYKVVELLLKYGASI-AATTESGLTPLHVASFMGCMNIAIFLLQAGA 358
L A + +V+ LL+ GA++ E G TPLH A M +I LL+ GA
Sbjct: 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63
Query: 359 APDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQ 418
P G TP LAA A ++++ L GA V+
Sbjct: 64 DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFY------------------- 104
Query: 419 SALTRVRGETPLHLAARANQTDIVRILLRNGASVDARARED----------QTPLHVASR 468
G T AA + ++ L + GA+V+ R + T L A+
Sbjct: 105 -------GFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE 157
Query: 469 LGNGDIASLLLQH-GASVDAPTKDGYTALHISAKEGQD----EVASILTESGASITATTK 523
G+ ++ +LL GA V+A G AL + D + +L + GA + +
Sbjct: 158 KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE 217
Query: 524 KGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAA 583
+G TPL LA + + + Q LL+++ I T G T L LA
Sbjct: 218 RGKTPLILAVEKKHLGLVQRLLEQE----------------HIEINDTDSDGKTALLLAV 261
Query: 584 KYGRMKIAQMLLQKDAPVDSQ 604
+ KIA++L ++ A D
Sbjct: 262 ELKLKKIAELLCKRGASTDCG 282
Score = 197 bits (503), Expect = 2e-57
Identities = 64/239 (26%), Positives = 92/239 (38%), Gaps = 29/239 (12%)
Query: 572 TKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKN-GVTPLHVASHYDHQNVALLLLDR 630
+ L A + + + Q LL+ A V+ Q + G TPLH A +++ LLL
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61
Query: 631 GASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMS 690
GA P KNG TP +AA + + L A N GFT +A G
Sbjct: 62 GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKAL 121
Query: 691 SLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHF 750
L + GA V+ + K + + + K G T L A+
Sbjct: 122 KFLYKRGANVNLRRK-----------------------TKEDQERLRKGGATALMDAAEK 158
Query: 751 GQLNMVRYLV-ENGANVNATTNLGYTPLHQASQQGRVL----IIDLLLGAGAQPNATTN 804
G + +++ L+ E GA+VNA N+G L A I LLL GA N
Sbjct: 159 GHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE 217
Score = 185 bits (473), Expect = 3e-53
Identities = 60/276 (21%), Positives = 107/276 (38%), Gaps = 28/276 (10%)
Query: 2 QQGHDRVVAVLLE-----NDTKGKVKLPALHIAAKKDDCKAAALLLEVSFSNTKLEVSLS 56
Q +V LLE N + + LH A + LLL ++ L
Sbjct: 14 QNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG-ADPVLRKKNG 72
Query: 57 NTKLEVSLSNTKFEATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLS 116
T ++ G ++ K+ + GA +N GFT AA +++L
Sbjct: 73 ATPFLLAAIA------GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK 126
Query: 117 KGGN----------QTLATEHNITPLHVACKWGKVAMVELLISK-GANIEAKTRDGLTPL 165
+G N Q + T L A + G V ++++L+ + GA++ A G L
Sbjct: 127 RGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL 186
Query: 166 HCAARSGHDN----VIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLI-YHGAGV 220
A S D+ + +L++ GA + + + G PL +A + H + L+ +
Sbjct: 187 IHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEI 246
Query: 221 DEITVDYLTALHVASHCGHVRVAKTLLDRKADPNAR 256
++ D TAL +A ++A+ L R A +
Sbjct: 247 NDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG 282
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 247 bits (634), Expect = 1e-76
Identities = 63/237 (26%), Positives = 105/237 (44%), Gaps = 3/237 (1%)
Query: 568 ITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLL 627
+T + A +YG + + L++ V K VT LH A+ + ++
Sbjct: 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYY 61
Query: 628 LDRGASPHAVAKN-GYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGH 686
+ +GA + + TPLH A ++ + + L++Y A P+ G + +HL+AQ GH
Sbjct: 62 ISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGH 121
Query: 687 TDMSSLLIEHGATVSHQAKNGLTPLHLCAQE-DKVNVATITMFNGAEIDPVTKA-GFTPL 744
T + + LI G V +NG+TPL A V+ + + ++ K T L
Sbjct: 122 TSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTAL 181
Query: 745 HIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNA 801
H A G ++ L+E GANV+A G + L A Q+ V +I+ L A
Sbjct: 182 HWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGY 238
Score = 235 bits (601), Expect = 6e-72
Identities = 59/245 (24%), Positives = 102/245 (41%), Gaps = 11/245 (4%)
Query: 88 INVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELL 147
+ + A Q R L+ G + + N+T LH A ++ +V+
Sbjct: 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYY 61
Query: 148 ISKGANIEAKTRD-GLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDH 206
ISKGA ++ D TPLH A R GH +++ L++ GA G + +H+A+Q H
Sbjct: 62 ISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGH 121
Query: 207 EAATRVLIYHGAGVDEITVDYLTALHVASHCGH-VRVAKTLLDRKADPNARA-LNGFTPL 264
+ LI G VD + + +T L A++ H V + LL N + T L
Sbjct: 122 TSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTAL 181
Query: 265 HIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYG 324
H A + V LL+ A+ +A+ + G + L +A ++ ++ L +
Sbjct: 182 HWAVLA--------GNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEAR 233
Query: 325 ASIAA 329
+
Sbjct: 234 QAKGY 238
Score = 233 bits (598), Expect = 2e-71
Identities = 54/235 (22%), Positives = 99/235 (42%), Gaps = 9/235 (3%)
Query: 126 EHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGA 185
+++ + A ++G L+ G ++ ++ +T LH AA + +++ I KGA
Sbjct: 7 DYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGA 66
Query: 186 ALYSKTKN-GLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAK 244
+ + PLH A++ H + L+ +GA I + + +H+A+ GH +
Sbjct: 67 IVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVA 126
Query: 245 TLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARA-LNGFT 303
L+ + D + NG TPL A + + V + LL N + T
Sbjct: 127 YLIAKGQDVDMMDQNGMTPLMWAAYRT-------HSVDPTRLLLTFNVSVNLGDKYHKNT 179
Query: 304 PLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGA 358
LH A V+ LLL+ GA++ A G + L +A + + L +A
Sbjct: 180 ALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQ 234
Score = 233 bits (598), Expect = 2e-71
Identities = 58/246 (23%), Positives = 95/246 (38%), Gaps = 11/246 (4%)
Query: 153 NIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRV 212
++ + A + G L+E G + K + LH A+ + +
Sbjct: 1 HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKY 60
Query: 213 LIYHGAGVDEITVDY-LTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKN 271
I GA VD++ D T LH A+ GH+ + L+ ADP+ G + +H+A +
Sbjct: 61 YISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQF- 119
Query: 272 RYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYK-VVELLLKYGASI-AA 329
H + L+ + D + NG TPL A + LLL + S+
Sbjct: 120 -------GHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLG 172
Query: 330 TTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRN 389
T LH A G + LL+AGA D ++GE+ L LA + ++ L
Sbjct: 173 DKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEA 232
Query: 390 GASVDA 395
+
Sbjct: 233 RQAKGY 238
Score = 224 bits (573), Expect = 6e-68
Identities = 65/269 (24%), Positives = 103/269 (38%), Gaps = 35/269 (13%)
Query: 254 NARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNR 313
+ A + + L++ D T LH A NR
Sbjct: 3 THIDDYSTWDIVKATQYG--------IYERCRELVEAGYDVRQPDKENVTLLHWAAINNR 54
Query: 314 YKVVELLLKYGASI-AATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLH 372
+V+ + GA + + TPLH A+ G +++ + L++ GA P G + +H
Sbjct: 55 IDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIH 114
Query: 373 LAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHL 432
LAA+ T IV L+ G VD + TPL A+
Sbjct: 115 LAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAY----------------------- 151
Query: 433 AARANQTDIVRILLRNGASVDARARED-QTPLHVASRLGNGDIASLLLQHGASVDAPTKD 491
R + D R+LL SV+ + T LH A GN + SLLL+ GA+VDA
Sbjct: 152 --RTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIK 209
Query: 492 GYTALHISAKEGQDEVASILTESGASITA 520
G +AL ++ + + + L E+ +
Sbjct: 210 GESALDLAKQRKNVWMINHLQEARQAKGY 238
Score = 223 bits (570), Expect = 2e-67
Identities = 61/270 (22%), Positives = 103/270 (38%), Gaps = 35/270 (12%)
Query: 220 VDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCN 279
+ I + A+ G + L++ D T LH A N
Sbjct: 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINN-------- 53
Query: 280 HVWVAKTLLDRKADPNARALN-GFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPL 338
+ + K + + A + + TPLH A ++ +V L+KYGA + G + +
Sbjct: 54 RIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCI 113
Query: 339 HVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAA-RANQTDIVRILLRNGASVDARA 397
H+A+ G +I +L+ G D G TPL AA R + D R+LL SV+
Sbjct: 114 HLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGD 173
Query: 398 REDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAR 457
+ T LH A A T ++ +LL GA+VDA+
Sbjct: 174 KYH-------------------------KNTALHWAVLAGNTTVISLLLEAGANVDAQNI 208
Query: 458 EDQTPLHVASRLGNGDIASLLLQHGASVDA 487
+ ++ L +A + N + + L + +
Sbjct: 209 KGESALDLAKQRKNVWMINHLQEARQAKGY 238
Score = 221 bits (567), Expect = 5e-67
Identities = 64/227 (28%), Positives = 105/227 (46%), Gaps = 11/227 (4%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQ-TLATEHNITP 131
G E + LV+ G + T L+ AA N +V+Y +SKG L + N TP
Sbjct: 20 GIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTP 79
Query: 132 LHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKT 191
LH A + G ++MV L+ GA+ +G + +H AA+ GH +++ LI KG +
Sbjct: 80 LHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMD 139
Query: 192 KNGLAPLHMASQGDHEAAT-RVLIYHGAGVDEIT-VDYLTALHVASHCGHVRVAKTLLDR 249
+NG+ PL A+ H R+L+ V+ TALH A G+ V LL+
Sbjct: 140 QNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA 199
Query: 250 KADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNA 296
A+ +A+ + G + L +A ++ +VW+ L + +
Sbjct: 200 GANVDAQNIKGESALDLAKQR--------KNVWMINHLQEARQAKGY 238
Score = 218 bits (559), Expect = 7e-66
Identities = 59/275 (21%), Positives = 97/275 (35%), Gaps = 44/275 (16%)
Query: 327 IAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRIL 386
+ + + A+ G L++AG T LH AA N+ D+V+
Sbjct: 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYY 61
Query: 387 LRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILL 446
+ GA VD + TPLH A R +V L+
Sbjct: 62 ISKGAIVDQLGGD-------------------------LNSTPLHWATRQGHLSMVVQLM 96
Query: 447 RNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEG-QD 505
+ GA E + +H+A++ G+ I + L+ G VD ++G T L +A
Sbjct: 97 KYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSV 156
Query: 506 EVASILTESGASITATTKK-GFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTES 564
+ +L S+ K T LH A G + +LL+
Sbjct: 157 DPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA----------------- 199
Query: 565 GASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDA 599
GA++ A KG + L LA + + + L +
Sbjct: 200 GANVDAQNIKGESALDLAKQRKNVWMINHLQEARQ 234
Score = 188 bits (480), Expect = 8e-55
Identities = 51/261 (19%), Positives = 97/261 (37%), Gaps = 47/261 (18%)
Query: 2 QQGHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCKAAALLLEVSFSNTKLEVSLSN 57
Q G L+E K + LH AA
Sbjct: 18 QYGIYERCRELVEAGYDVRQPDKENVTLLHWAAIN------------------------- 52
Query: 58 TKLEVSLSNTKFEATGQEEVAKILVDNGATINVQSLN-GFTPLYMAAQENHDGVVRYLLS 116
+ ++ K + GA ++ + TPL+ A ++ H +V L+
Sbjct: 53 ---------------NRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMK 97
Query: 117 KGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHD-N 175
G + +L + +H+A ++G ++V LI+KG +++ ++G+TPL AA H +
Sbjct: 98 YGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVD 157
Query: 176 VIDILIEKGAALYSKTK-NGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVA 234
+L+ ++ K + LH A + +L+ GA VD + +AL +A
Sbjct: 158 PTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLA 217
Query: 235 SHCGHVRVAKTLLDRKADPNA 255
+V + L + +
Sbjct: 218 KQRKNVWMINHLQEARQAKGY 238
Score = 171 bits (437), Expect = 8e-49
Identities = 48/240 (20%), Positives = 81/240 (33%), Gaps = 49/240 (20%)
Query: 601 VDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTL 660
+ + A+ Y L++ G K T LH AA N++D+
Sbjct: 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYY 61
Query: 661 LEYNAKPNAESK-AGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDK 719
+ A + TPLH + ++GH M L+++GA S G
Sbjct: 62 ISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEG------------ 109
Query: 720 VNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQ 779
+ +H+A+ FG ++V YL+ G +V+ G TPL
Sbjct: 110 ---------------------CSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMW 148
Query: 780 ASQQGRVL-IIDLLLGAGAQPNATTN------LFC--------CATILVKNGAEIDPVTK 824
A+ + + LLL N L ++L++ GA +D
Sbjct: 149 AAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNI 208
Score = 92.1 bits (230), Expect = 5e-21
Identities = 25/161 (15%), Positives = 45/161 (27%), Gaps = 44/161 (27%)
Query: 2 QQGHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCKAAALLLEVSFSNTKLEVSLSN 57
Q GH +VA L+ D + + L AA +
Sbjct: 118 QFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSV--------------------- 156
Query: 58 TKLEVSLSNTKFEATGQEEVAKILVDNGATINVQ-SLNGFTPLYMAAQENHDGVVRYLLS 116
+ ++L+ ++N+ + T L+ A + V+ LL
Sbjct: 157 ------------------DPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLE 198
Query: 117 KGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAK 157
G N + L +A + V M+ L
Sbjct: 199 AGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYD 239
Score = 47.8 bits (115), Expect = 5e-06
Identities = 10/69 (14%), Positives = 19/69 (27%), Gaps = 13/69 (18%)
Query: 765 NVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTN-----LFC--------CATI 811
++ + + +A+Q G L+ AG L
Sbjct: 1 HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKY 60
Query: 812 LVKNGAEID 820
+ GA +D
Sbjct: 61 YISKGAIVD 69
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 245 bits (629), Expect = 5e-76
Identities = 64/239 (26%), Positives = 107/239 (44%), Gaps = 9/239 (3%)
Query: 88 INVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELL 147
++ N +PL+ AA+ H + L+ G N +E TPL A + + V+ L
Sbjct: 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYL 63
Query: 148 ISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAA-LYSKTKNGLAPLHMASQGDH 206
I GA ++ K +G T LH AA+ GH V+ L+ G + + G P+ A++ H
Sbjct: 64 IKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKH 123
Query: 207 EAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHI 266
++L+ G+ ++ + LH A+ G V +A+ LL K D +A ++G +PLHI
Sbjct: 124 VDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHI 183
Query: 267 ACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGA 325
A ++ N L R +D + G TPL A ++ + K
Sbjct: 184 AARE--------NRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQ 234
Score = 243 bits (623), Expect = 5e-75
Identities = 64/247 (25%), Positives = 113/247 (45%), Gaps = 16/247 (6%)
Query: 452 VDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASIL 511
+ ++PLH A+ G+ DI +L+Q GA++D ++D T L +A+ E L
Sbjct: 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYL 63
Query: 512 TESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITAT 571
++GA + +G T LHLAAK G ++ Q LL +
Sbjct: 64 IKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQ----------------MDVNCQ 107
Query: 572 TKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRG 631
G+TP+ A +Y + + ++LL K + ++ + LH A+ ++A +LL
Sbjct: 108 DDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAK 167
Query: 632 ASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSS 691
HAV +G +PLHIAA++N+ D L ++ ++K G TPL ++ +
Sbjct: 168 CDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSAL 227
Query: 692 LLIEHGA 698
+ +
Sbjct: 228 QMSKALQ 234
Score = 240 bits (616), Expect = 4e-74
Identities = 65/241 (26%), Positives = 109/241 (45%), Gaps = 9/241 (3%)
Query: 152 ANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATR 211
N + + ++ +PLH AA +GH ++ +L++ GA + + +++ PL A++ +H A +
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVK 61
Query: 212 VLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKA-DPNARALNGFTPLHIACKK 270
LI GA VD + T LH+A+ GH V + LL D N + G+TP+ A +
Sbjct: 62 YLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEY 121
Query: 271 NRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAAT 330
HV + K LL + +D N R LH A + E+LL + A
Sbjct: 122 K--------HVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAV 173
Query: 331 TESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNG 390
G +PLH+A+ + + L + GETPL A+ +Q + +
Sbjct: 174 NIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKAL 233
Query: 391 A 391
Sbjct: 234 Q 234
Score = 237 bits (607), Expect = 9e-73
Identities = 67/241 (27%), Positives = 114/241 (47%), Gaps = 18/241 (7%)
Query: 426 GETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASV 485
+PLH AA A DI +L++ GA++D + + +TPL A+ + + L++ GA V
Sbjct: 11 KRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV 70
Query: 486 DAPTKDGYTALHISAKEGQDEVASILTESGAS-ITATTKKGFTPLHLAAKYGRMKIAQML 544
D +G T LH++AK+G EV L +G + G+TP+ A +Y + + ++L
Sbjct: 71 DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLL 130
Query: 545 LQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQ 604
L K G+ I + LH AA G + IA++LL + +
Sbjct: 131 LSK-----------------GSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAV 173
Query: 605 GKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYN 664
+G +PLH+A+ + + +L L R + K G TPL A+ +Q+ A + +
Sbjct: 174 NIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKAL 233
Query: 665 A 665
Sbjct: 234 Q 234
Score = 236 bits (604), Expect = 2e-72
Identities = 62/231 (26%), Positives = 102/231 (44%), Gaps = 1/231 (0%)
Query: 568 ITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLL 627
+ +PLH AA+ G + I ML+Q A +D+ ++ TPL A+ +H L
Sbjct: 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYL 63
Query: 628 LDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAK-PNAESKAGFTPLHLSAQEGH 686
+ GA G T LH+AAKK ++ LL N + G+TP+ + + H
Sbjct: 64 IKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKH 123
Query: 687 TDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHI 746
D+ LL+ G+ ++ + LH A V++A I + ++ V G +PLHI
Sbjct: 124 VDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHI 183
Query: 747 ASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGA 797
A+ + + V + ++V G TPL AS +V + A
Sbjct: 184 AARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQ 234
Score = 233 bits (598), Expect = 2e-71
Identities = 67/259 (25%), Positives = 112/259 (43%), Gaps = 27/259 (10%)
Query: 292 ADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAI 351
+ N +PLH A + + +L++ GA+I +E TPL A+ +
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVK 61
Query: 352 FLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGAS-VDARAREDQTPLHVASRL 410
+L++AGA D G T LHLAA+ ++V+ LL NG V+ +
Sbjct: 62 YLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDG----------- 110
Query: 411 RRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLG 470
G TP+ A D+V++LL G+ ++ R E+ LH A+ G
Sbjct: 111 ---------------GWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSG 155
Query: 471 NGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLH 530
DIA +LL + A G + LHI+A+E + + + + +T K+G TPL
Sbjct: 156 CVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQ 215
Query: 531 LAAKYGRMKIAQMLLQKDA 549
A+ ++ A + +
Sbjct: 216 CASLNSQVWSALQMSKALQ 234
Score = 230 bits (589), Expect = 3e-70
Identities = 66/240 (27%), Positives = 110/240 (45%), Gaps = 18/240 (7%)
Query: 485 VDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
++ + LH +A+ G ++ +L ++GA+I ++ TPL AA+ ++ + L
Sbjct: 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYL 63
Query: 545 LQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAP-VDS 603
++ GA + +G T LHLAAK G ++ Q LL V+
Sbjct: 64 IKA-----------------GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNC 106
Query: 604 QGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEY 663
Q G TP+ A+ Y H ++ LLL +G+ + LH AA +DIA LL
Sbjct: 107 QDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAA 166
Query: 664 NAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVA 723
+A + G +PLH++A+E D L + + V+ + K G TPL + +V A
Sbjct: 167 KCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSA 226
Score = 205 bits (525), Expect = 4e-61
Identities = 49/205 (23%), Positives = 99/205 (48%), Gaps = 1/205 (0%)
Query: 601 VDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTL 660
+ +N +PLH A+ H ++ +L+ GA+ +++ TPL AA+ N ++ L
Sbjct: 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYL 63
Query: 661 LEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGAT-VSHQAKNGLTPLHLCAQEDK 719
++ A + + G T LHL+A++GH ++ L+ +G V+ Q G TP+ +
Sbjct: 64 IKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKH 123
Query: 720 VNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQ 779
V++ + + G++I+ LH A+ G +++ L+ +++A G +PLH
Sbjct: 124 VDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHI 183
Query: 780 ASQQGRVLIIDLLLGAGAQPNATTN 804
A+++ R + L L +
Sbjct: 184 AARENRYDCVVLFLSRDSDVTLKNK 208
Score = 186 bits (476), Expect = 3e-54
Identities = 51/181 (28%), Positives = 89/181 (49%), Gaps = 1/181 (0%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKG-GNQTLATEHNITP 131
E K L+ GA ++ + G T L++AA++ H VV+YLLS G + + TP
Sbjct: 55 NHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTP 114
Query: 132 LHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKT 191
+ A ++ V +V+LL+SKG++I + + LH AA SG ++ +IL+ L++
Sbjct: 115 MIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVN 174
Query: 192 KNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKA 251
+G +PLH+A++ + + + + V + T L AS V A +
Sbjct: 175 IHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQ 234
Query: 252 D 252
D
Sbjct: 235 D 235
Score = 160 bits (407), Expect = 8e-45
Identities = 52/222 (23%), Positives = 82/222 (36%), Gaps = 45/222 (20%)
Query: 2 QQGHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCKAAALLLEVSFSNTKLEVSLSN 57
+ H V L++ D K LH+AAKK
Sbjct: 53 ENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKK------------------------- 87
Query: 58 TKLEVSLSNTKFEATGQEEVAKILVDNGAT-INVQSLNGFTPLYMAAQENHDGVVRYLLS 116
G EV + L+ NG +N Q G+TP+ A + H +V+ LLS
Sbjct: 88 ---------------GHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLS 132
Query: 117 KGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNV 176
KG + + LH A G V + E+L++ ++ A G +PLH AAR +
Sbjct: 133 KGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDC 192
Query: 177 IDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGA 218
+ + + + + + K K G PL AS + +
Sbjct: 193 VVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQ 234
Score = 138 bits (351), Expect = 3e-37
Identities = 47/171 (27%), Positives = 82/171 (47%), Gaps = 14/171 (8%)
Query: 664 NAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVA 723
+ E + +PLH +A+ GH D+ +L++ GA + +++ TPL A+ + +
Sbjct: 1 HMNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAV 60
Query: 724 TITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGA-NVNATTNLGYTPLHQASQ 782
+ GA +DP G T LH+A+ G +V+YL+ NG +VN + G+TP+ A++
Sbjct: 61 KYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATE 120
Query: 783 QGRVLIIDLLLGAGAQPNATTN-----LFC--------CATILVKNGAEID 820
V ++ LLL G+ N N L A IL+ ++
Sbjct: 121 YKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLH 171
Score = 59.0 bits (144), Expect = 8e-10
Identities = 17/132 (12%), Positives = 41/132 (31%), Gaps = 27/132 (20%)
Query: 2 QQGHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCKAAALLLEV--------SFSNT 49
+ H +V +LL + + + LH AA A +LL ++
Sbjct: 120 EYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDS 179
Query: 50 KLEVSLSNTKLEVSLSNTKFEATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDG 109
L ++ + + + + + + +++ G TPL A+ +
Sbjct: 180 PLHIAARE---------------NRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVW 224
Query: 110 VVRYLLSKGGNQ 121
+ +
Sbjct: 225 SALQMSKALQDS 236
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 241 bits (618), Expect = 4e-74
Identities = 78/300 (26%), Positives = 123/300 (41%), Gaps = 56/300 (18%)
Query: 252 DPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKK 311
D N R +GFTPL IA G + ++
Sbjct: 2 DVNVRGPDGFTPLMIASCSG----------------------------GGLETGNSEEEE 33
Query: 312 NRYKVVELLLKYGASI-AATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETP 370
+ V+ + GAS+ T +G T LH+A+ + A LL+A A + G TP
Sbjct: 34 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP 93
Query: 371 LHLAARANQTDIVRILLRNGAS-VDARAREDQTPLHVASRLRRFSSASQSALTRVRGETP 429
LH A A+ + +IL+RN A+ +DAR + G TP
Sbjct: 94 LHAAVSADAQGVFQILIRNRATDLDARMHD--------------------------GTTP 127
Query: 430 LHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPT 489
L LAAR ++ L+ + A V+A ++ LH A+ + N D A +LL++GA+ D
Sbjct: 128 LILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN 187
Query: 490 KDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDA 549
T L ++A+EG E A +L + A+ T P +A + I ++L +
Sbjct: 188 NREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHH 247
Score = 231 bits (591), Expect = 3e-70
Identities = 65/275 (23%), Positives = 108/275 (39%), Gaps = 30/275 (10%)
Query: 88 INVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELL 147
+NV+ +GFTPL +A+ + + + A++
Sbjct: 3 VNVRGPDGFTPLMIASCSGG--------------------GLETGNSEEEEDAPAVISDF 42
Query: 148 ISKGANIE-AKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDH 206
I +GA++ R G T LH AAR + L+E A + G PLH A D
Sbjct: 43 IYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADA 102
Query: 207 EAATRVLIYHGAG-VDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLH 265
+ ++LI + A +D D T L +A+ + + L++ AD NA G + LH
Sbjct: 103 QGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALH 162
Query: 266 IACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGA 325
A + N+V A LL A+ + + TPL +A ++ Y+ ++LL + A
Sbjct: 163 WA--------AAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFA 214
Query: 326 SIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAP 360
+ T P +A +I L
Sbjct: 215 NRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHH 249
Score = 230 bits (589), Expect = 6e-70
Identities = 73/252 (28%), Positives = 110/252 (43%), Gaps = 6/252 (2%)
Query: 518 ITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATT-KKGF 576
+ GFTPL +A+ G +++ V S GAS+ T + G
Sbjct: 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPA----VISDFIYQGASLHNQTDRTGE 58
Query: 577 TPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGAS-PH 635
T LHLAA+Y R A+ LL+ A + Q G TPLH A D Q V +L+ A+
Sbjct: 59 TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 118
Query: 636 AVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIE 695
A +G TPL +AA+ + L+ +A NA G + LH +A + D + +L++
Sbjct: 119 ARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK 178
Query: 696 HGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNM 755
+GA Q TPL L A+E A + + + A D P IA ++
Sbjct: 179 NGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDI 238
Query: 756 VRYLVENGANVN 767
VR L + +
Sbjct: 239 VRLLDLEHHHHH 250
Score = 226 bits (580), Expect = 1e-68
Identities = 79/309 (25%), Positives = 120/309 (38%), Gaps = 65/309 (21%)
Query: 293 DPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIF 352
D N R +GFTPL IA GL + +
Sbjct: 2 DVNVRGPDGFTPLMIASCSG--------------------GGLETGNSEEEEDAPAVISD 41
Query: 353 LLQAGAAPDTATVR-GETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLR 411
+ GA+ T R GET LHLAAR +++D + LL A + +
Sbjct: 42 FIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNM------------ 89
Query: 412 RFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGAS-VDARAREDQTPLHVASRLG 470
G TPLH A A+ + +IL+RN A+ +DAR + TPL +A+RL
Sbjct: 90 --------------GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLA 135
Query: 471 NGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLH 530
+ L+ A V+A G +ALH +A + A +L ++GA+ + TPL
Sbjct: 136 VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF 195
Query: 531 LAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKI 590
LAA+ G + A++LL A+ T P +A + I
Sbjct: 196 LAAREGSYETAKVLLDH-----------------FANRDITDHMDRLPRDIAQERMHHDI 238
Query: 591 AQMLLQKDA 599
++L +
Sbjct: 239 VRLLDLEHH 247
Score = 218 bits (559), Expect = 8e-66
Identities = 80/300 (26%), Positives = 118/300 (39%), Gaps = 56/300 (18%)
Query: 153 NIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRV 212
++ + DG TPL A+ SG GL + + D A
Sbjct: 2 DVNVRGPDGFTPLMIASCSGG--------------------GLETGNSEEEEDAPAVISD 41
Query: 213 LIYHGAGVDEITVDY-LTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKN 271
IY GA + T TALH+A+ AK LL+ AD N + G TPLH A
Sbjct: 42 FIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA---- 97
Query: 272 RYKSSHCNHVWVAKTLLDRKA-DPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAAT 330
+ V + L+ +A D +AR +G TPL +A + ++E L+ A + A
Sbjct: 98 ----VSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV 153
Query: 331 TESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNG 390
+ G + LH A+ + ++ A+ LL+ GA D R ETPL LAAR + ++LL +
Sbjct: 154 DDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHF 213
Query: 391 ASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGA 450
A+ D P +A DIVR+L
Sbjct: 214 ANRDITDHM--------------------------DRLPRDIAQERMHHDIVRLLDLEHH 247
Score = 205 bits (524), Expect = 8e-61
Identities = 56/225 (24%), Positives = 94/225 (41%), Gaps = 10/225 (4%)
Query: 73 GQEEVAKILVDNGATI-NVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITP 131
V + GA++ N G T L++AA+ + + LL + + TP
Sbjct: 34 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP 93
Query: 132 LHVACKWGKVAMVELLISKGA-NIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSK 190
LH A + ++LI A +++A+ DG TPL AAR + +++ LI A + +
Sbjct: 94 LHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV 153
Query: 191 TKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRK 250
G + LH A+ ++ A VL+ +GA D T L +A+ G AK LLD
Sbjct: 154 DDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHF 213
Query: 251 ADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPN 295
A+ + P IA ++ H + + L +
Sbjct: 214 ANRDITDHMDRLPRDIAQER--------MHHDIVRLLDLEHHHHH 250
Score = 185 bits (472), Expect = 2e-53
Identities = 53/250 (21%), Positives = 91/250 (36%), Gaps = 14/250 (5%)
Query: 16 DTKGKVKLPALHIAAKKDDCKAAALLLEVSFSNTKLEVSLSNTKLEVSLSNTKFE----- 70
+ +G L IA+ E + + + SL N
Sbjct: 4 NVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQ---GASLHNQTDRTGETA 60
Query: 71 -----ATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLAT 125
+ + AK L++ A N+Q G TPL+ A + GV + L+ A
Sbjct: 61 LHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR 120
Query: 126 EHN-ITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKG 184
H+ TPL +A + M+E LI+ A++ A G + LH AA + + +L++ G
Sbjct: 121 MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG 180
Query: 185 AALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAK 244
A + PL +A++ +VL+ H A D +A H + +
Sbjct: 181 ANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVR 240
Query: 245 TLLDRKADPN 254
L +
Sbjct: 241 LLDLEHHHHH 250
Score = 158 bits (403), Expect = 5e-44
Identities = 51/223 (22%), Positives = 95/223 (42%), Gaps = 13/223 (5%)
Query: 2 QQGHDRVVAVLLEN-----DTKGKVKLPALHIAAKKDDCKAAALLLEVSFSNTKLEVSLS 56
++ V++ + + + ALH+AA+ AA LLE S ++ ++ ++
Sbjct: 32 EEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEAS-ADANIQDNMG 90
Query: 57 NTKLEVSLSNTKFEATGQEEVAKILVDNGAT-INVQSLNGFTPLYMAAQENHDGVVRYLL 115
T L ++S + V +IL+ N AT ++ + +G TPL +AA+ +G++ L+
Sbjct: 91 RTPLHAAVSA------DAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLI 144
Query: 116 SKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDN 175
+ + + + LH A V +L+ GAN + + TPL AAR G
Sbjct: 145 NSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYE 204
Query: 176 VIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGA 218
+L++ A P +A + H R+L
Sbjct: 205 TAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHH 247
Score = 130 bits (329), Expect = 4e-34
Identities = 47/197 (23%), Positives = 79/197 (40%), Gaps = 35/197 (17%)
Query: 639 KNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGA 698
+G+TPL IA+ G + +E + S I GA
Sbjct: 8 PDGFTPLMIASCSGG--------------------GLETGNSEEEEDAPAVISDFIYQGA 47
Query: 699 TVS-HQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVR 757
++ + G T LHL A+ + + A + A+ + G TPLH A + +
Sbjct: 48 SLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQ 107
Query: 758 YLVENGA-NVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTN-----LFC---- 807
L+ N A +++A + G TPL A++ +++ L+ + A NA + L
Sbjct: 108 ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV 167
Query: 808 ----CATILVKNGAEID 820
A +L+KNGA D
Sbjct: 168 NNVDAAVVLLKNGANKD 184
Score = 67.5 bits (166), Expect = 2e-12
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 14/87 (16%)
Query: 732 EIDPVTKAGFTPLHIASHFGQ-------------LNMVRYLVENGANV-NATTNLGYTPL 777
+++ GFTPL IAS G ++ + GA++ N T G T L
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61
Query: 778 HQASQQGRVLIIDLLLGAGAQPNATTN 804
H A++ R LL A A N N
Sbjct: 62 HLAARYSRSDAAKRLLEASADANIQDN 88
Score = 35.9 bits (84), Expect = 0.038
Identities = 18/83 (21%), Positives = 28/83 (33%), Gaps = 27/83 (32%)
Query: 765 NVNATTNLGYTPLHQASQQGRVL-------------IIDLLLGAGAQPNATTN------L 805
+VN G+TPL AS G L +I + GA + T+ L
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61
Query: 806 FCCAT--------ILVKNGAEID 820
A L++ A+ +
Sbjct: 62 HLAARYSRSDAAKRLLEASADAN 84
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 224 bits (574), Expect = 4e-68
Identities = 58/270 (21%), Positives = 102/270 (37%), Gaps = 49/270 (18%)
Query: 426 GETPLHLAARANQT----DIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQH 481
G++ LHLA + +++R + + A ++ + QTPLH+A +IA LL
Sbjct: 8 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 67
Query: 482 GASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIA 541
G + G T LH++ ++G +LT+S +
Sbjct: 68 GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTP----------------------- 104
Query: 542 QMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPV 601
+ + AT G T LHLA+ +G + I ++L+ A V
Sbjct: 105 ---------------------HLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV 143
Query: 602 DSQ-GKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTL 660
++Q NG T LH+A + ++ LLL GA + V GY+P + + I L
Sbjct: 144 NAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQL 203
Query: 661 LEYNAKPNAESKAGFTPLHLSAQEGHTDMS 690
+ + + T+ +
Sbjct: 204 GQLTLENLQMLPESEDEESYDTESEFTEFT 233
Score = 207 bits (529), Expect = 1e-61
Identities = 60/247 (24%), Positives = 94/247 (38%), Gaps = 25/247 (10%)
Query: 300 NGFTPLHIACKKNR----YKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQ 355
+G + LH+A +V+ + A + TPLH+A IA LL
Sbjct: 7 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 66
Query: 356 AGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSS 415
AG P+ RG TPLHLA V +L ++ + + T +
Sbjct: 67 AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYN---------- 116
Query: 416 ASQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARARED-QTPLHVASRLGNGDI 474
G T LHLA+ IV +L+ GA V+A+ + +T LH+A L N D+
Sbjct: 117 ----------GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL 166
Query: 475 ASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAK 534
SLLL+ GA V+ T GY+ ++ + L + + +
Sbjct: 167 VSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTE 226
Query: 535 YGRMKIA 541
+
Sbjct: 227 SEFTEFT 233
Score = 204 bits (521), Expect = 1e-60
Identities = 51/210 (24%), Positives = 87/210 (41%), Gaps = 11/210 (5%)
Query: 606 KNGVTPLHVASHYDHQNVAL----LLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLL 661
++G + LH+A ++ + + + + A + TPLH+A NQ +IA LL
Sbjct: 6 EDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALL 65
Query: 662 EYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQA------KNGLTPLHLCA 715
P G TPLHL+ ++G +L + T + NG T LHL +
Sbjct: 66 GAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLAS 125
Query: 716 QEDKVNVATITMFNGAEIDPVTKA-GFTPLHIASHFGQLNMVRYLVENGANVNATTNLGY 774
+ + + + GA+++ G T LH+A ++V L++ GA+VN T GY
Sbjct: 126 IHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGY 185
Query: 775 TPLHQASQQGRVLIIDLLLGAGAQPNATTN 804
+P + I L +
Sbjct: 186 SPYQLTWGRPSTRIQQQLGQLTLENLQMLP 215
Score = 203 bits (520), Expect = 2e-60
Identities = 56/240 (23%), Positives = 80/240 (33%), Gaps = 19/240 (7%)
Query: 155 EAKTRDGLTPLHCAARSGH----DNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAAT 210
+ T DG + LH A VI + A L + PLH+A +
Sbjct: 2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIA 61
Query: 211 RVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADP------NARALNGFTPL 264
L+ G + T LH+A G + L P A NG T L
Sbjct: 62 EALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCL 121
Query: 265 HIACKKNRYKSSHCNHVWVAKTLLDRKADPNARA-LNGFTPLHIACKKNRYKVVELLLKY 323
H+A ++ + + L+ AD NA+ NG T LH+A +V LLLK
Sbjct: 122 HLASIHG--------YLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC 173
Query: 324 GASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIV 383
GA + T G +P + I L Q E + T+
Sbjct: 174 GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFT 233
Score = 203 bits (518), Expect = 4e-60
Identities = 58/248 (23%), Positives = 91/248 (36%), Gaps = 28/248 (11%)
Query: 487 APTKDGYTALHISA----KEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQ 542
T+DG + LH++ K EV + A + TPLHLA + +IA+
Sbjct: 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 62
Query: 543 MLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDA--- 599
LL G +G TPLHLA + G + +L Q
Sbjct: 63 ALLGA-----------------GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPH 105
Query: 600 ---PVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAK-NGYTPLHIAAKKNQMD 655
+ + NG T LH+AS + + + LL+ GA +A NG T LH+A D
Sbjct: 106 LHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPD 165
Query: 656 IATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCA 715
+ + LL+ A N + G++P L+ T + L +
Sbjct: 166 LVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDT 225
Query: 716 QEDKVNVA 723
+ +
Sbjct: 226 ESEFTEFT 233
Score = 201 bits (513), Expect = 1e-59
Identities = 47/236 (19%), Positives = 80/236 (33%), Gaps = 19/236 (8%)
Query: 94 NGFTPLYMAAQENHDG----VVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLIS 149
+G + L++A V+R + TPLH+A + + E L+
Sbjct: 7 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 66
Query: 150 KGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGA------ALYSKTKNGLAPLHMASQ 203
G + E + G TPLH A G + +L + L + NG LH+AS
Sbjct: 67 AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 126
Query: 204 GDHEAATRVLIYHGAGVDEITVDY-LTALHVASHCGHVRVAKTLLDRKADPNARALNGFT 262
+ +L+ GA V+ TALH+A + + LL AD N G++
Sbjct: 127 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYS 186
Query: 263 PLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVE 318
P + + + + L + + + E
Sbjct: 187 PYQLTWGRP--------STRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFTE 234
Score = 200 bits (511), Expect = 3e-59
Identities = 47/237 (19%), Positives = 84/237 (35%), Gaps = 19/237 (8%)
Query: 125 TEHNITPLHVACKWGKVA----MVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 180
TE + LH+A + A ++ + A + + TPLH A + + + L
Sbjct: 5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 64
Query: 181 IEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGA------GVDEITVDYLTALHVA 234
+ G + G PLH+A + A+ VL + + T LH+A
Sbjct: 65 LGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLA 124
Query: 235 SHCGHVRVAKTLLDRKADPNARA-LNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKAD 293
S G++ + + L+ AD NA+ NG T LH+A + + LL AD
Sbjct: 125 SIHGYLGIVELLVSLGADVNAQEPCNGRTALHLA--------VDLQNPDLVSLLLKCGAD 176
Query: 294 PNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIA 350
N G++P + + ++ + L + +
Sbjct: 177 VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFT 233
Score = 192 bits (491), Expect = 2e-56
Identities = 55/270 (20%), Positives = 92/270 (34%), Gaps = 53/270 (19%)
Query: 520 ATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPL 579
T+ G + LHLA + + +V + A + TPL
Sbjct: 3 QLTEDGDSFLHLAIIHEEKALTM-------------EVIRQVKGDLAFLNFQNNLQQTPL 49
Query: 580 HLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVA- 638
HLA + +IA+ LL + + G TPLH+A +L +PH +
Sbjct: 50 HLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSI 109
Query: 639 -----KNGYTPLHIAAKKNQMDIATTLLEYNAKPNA-ESKAGFTPLHLSAQEGHTDMSSL 692
NG+T LH+A+ + I L+ A NA E G T LHL+ + D+ SL
Sbjct: 110 LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSL 169
Query: 693 LIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQ 752
L++ GA+++ VT G++P +
Sbjct: 170 LLKC---------------------------------GADVNRVTYQGYSPYQLTWGRPS 196
Query: 753 LNMVRYLVENGANVNATTNLGYTPLHQASQ 782
+ + L + ++
Sbjct: 197 TRIQQQLGQLTLENLQMLPESEDEESYDTE 226
Score = 190 bits (485), Expect = 1e-55
Identities = 46/204 (22%), Positives = 84/204 (41%), Gaps = 7/204 (3%)
Query: 75 EEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHV 134
EV + + + A +N Q+ TPL++A N + LL G + L TPLH+
Sbjct: 25 MEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHL 84
Query: 135 ACKWGKVAMVELLISKGAN------IEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALY 188
AC+ G +A V +L ++A +G T LH A+ G+ ++++L+ GA +
Sbjct: 85 ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN 144
Query: 189 SKTK-NGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLL 247
++ NG LH+A + +L+ GA V+ +T + + R+ + L
Sbjct: 145 AQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLG 204
Query: 248 DRKADPNARALNGFTPLHIACKKN 271
+ +
Sbjct: 205 QLTLENLQMLPESEDEESYDTESE 228
Score = 164 bits (418), Expect = 2e-46
Identities = 39/175 (22%), Positives = 72/175 (41%), Gaps = 7/175 (4%)
Query: 72 TGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNI-- 129
T Q E+A+ L+ G ++ G TPL++A ++ V L L +
Sbjct: 55 TNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATN 114
Query: 130 ----TPLHVACKWGKVAMVELLISKGANIEAKT-RDGLTPLHCAARSGHDNVIDILIEKG 184
T LH+A G + +VELL+S GA++ A+ +G T LH A + +++ +L++ G
Sbjct: 115 YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG 174
Query: 185 AALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGH 239
A + T G +P + + L ++ + +
Sbjct: 175 ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEF 229
Score = 129 bits (328), Expect = 3e-34
Identities = 36/190 (18%), Positives = 65/190 (34%), Gaps = 14/190 (7%)
Query: 25 ALHIAAKKDDCKAAALLLEVSFSNTKLEVSLSNTKLEVSLSNTKFEATGQEEVAKILVDN 84
LH+A + + A LL + +L NT L ++ G +L +
Sbjct: 48 PLHLAVITNQPEIAEALLGAG-CDPELRDFRGNTPLHLACEQ------GCLASVGVLTQS 100
Query: 85 GA------TINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHN-ITPLHVACK 137
+ + NG T L++A+ + G+V L+S G + N T LH+A
Sbjct: 101 CTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVD 160
Query: 138 WGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAP 197
+V LL+ GA++ T G +P + L +
Sbjct: 161 LQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDE 220
Query: 198 LHMASQGDHE 207
++ +
Sbjct: 221 ESYDTESEFT 230
Score = 99.5 bits (249), Expect = 1e-23
Identities = 29/188 (15%), Positives = 50/188 (26%), Gaps = 51/188 (27%)
Query: 2 QQGHDRVVAVLLENDTKGKVKLP----------ALHIAAKKDDCKAAALLLEVSFSNTKL 51
+QG V VL ++ T + LH+A+
Sbjct: 87 EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH------------------- 127
Query: 52 EVSLSNTKLEVSLSNTKFEATGQEEVAKILVDNGATINVQ-SLNGFTPLYMAAQENHDGV 110
G + ++LV GA +N Q NG T L++A + +
Sbjct: 128 ---------------------GYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL 166
Query: 111 VRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAAR 170
V LL G + T +P + + + L +
Sbjct: 167 VSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTE 226
Query: 171 SGHDNVID 178
S +
Sbjct: 227 SEFTEFTE 234
Score = 79.1 bits (196), Expect = 1e-16
Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 17/107 (15%)
Query: 736 VTKAGFTPLHIASHFGQ----LNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDL 791
+T+ G + LH+A + + ++R + + A +N NL TPLH A + I +
Sbjct: 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 63
Query: 792 LLGAGAQPNATTN-----LFC--------CATILVKNGAEIDPVTKL 825
LLGAG P L +L ++ + L
Sbjct: 64 LLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSIL 110
Score = 36.4 bits (85), Expect = 0.027
Identities = 14/74 (18%), Positives = 21/74 (28%), Gaps = 17/74 (22%)
Query: 768 ATTNLGYTPLHQASQQGR----VLIIDLLLGAGAQPNATTNLFC-------------CAT 810
T G + LH A + +I + G A N NL A
Sbjct: 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 62
Query: 811 ILVKNGAEIDPVTK 824
L+ G + +
Sbjct: 63 ALLGAGCDPELRDF 76
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 223 bits (571), Expect = 7e-68
Identities = 69/224 (30%), Positives = 99/224 (44%), Gaps = 9/224 (4%)
Query: 557 VASILTESGASIT-ATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVA 615
V S GAS+ T + G T LHLAA+Y R A+ LL+ A + Q G TPLH A
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 65
Query: 616 SHYDHQNVALLLLDRGAS-PHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAG 674
D Q V +L+ A+ A +G TPL +AA+ + L+ +A NA G
Sbjct: 66 VSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLG 125
Query: 675 FTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEID 734
+ LH +A + D + +L+++GA Q TPL L A+E A + + + A D
Sbjct: 126 KSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD 185
Query: 735 PVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLH 778
P IA ++VR L E + LH
Sbjct: 186 ITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS-------PQLH 222
Score = 215 bits (551), Expect = 6e-65
Identities = 63/246 (25%), Positives = 94/246 (38%), Gaps = 26/246 (10%)
Query: 436 ANQTDIVRILLRNGASVDARARED-QTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYT 494
+ ++ + GAS+ + +T LH+A+R D A LL+ A + G T
Sbjct: 1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRT 60
Query: 495 ALHISAKEGQDEVASILTESGAS-ITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDS 553
LH + V IL + A+ + A G TPL LAA+ + + L+
Sbjct: 61 PLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS------ 114
Query: 554 QGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLH 613
A + A G + LH AA + A +LL+ A D Q TPL
Sbjct: 115 -----------HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF 163
Query: 614 VASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKA 673
+A+ A +LLD A+ P IA ++ DI L EYN +
Sbjct: 164 LAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS----- 218
Query: 674 GFTPLH 679
LH
Sbjct: 219 --PQLH 222
Score = 215 bits (550), Expect = 7e-65
Identities = 60/244 (24%), Positives = 102/244 (41%), Gaps = 24/244 (9%)
Query: 470 GNGDIASLLLQHGASV-DAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTP 528
+ S + GAS+ + + G TALH++A+ + + A L E+ A G TP
Sbjct: 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP 61
Query: 529 LHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRM 588
LH A + Q+L++ A + A G TPL LAA+
Sbjct: 62 LHAAVSADAQGVFQILIRNRA----------------TDLDARMHDGTTPLILAARLAVE 105
Query: 589 KIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIA 648
+ + L+ A V++ G + LH A+ ++ + A++LL GA+ TPL +A
Sbjct: 106 GMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLA 165
Query: 649 AKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGL 708
A++ + A LL++ A + P ++ + H D+ LL E+
Sbjct: 166 AREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNL-------VRS 218
Query: 709 TPLH 712
LH
Sbjct: 219 PQLH 222
Score = 211 bits (541), Expect = 2e-63
Identities = 67/236 (28%), Positives = 108/236 (45%), Gaps = 28/236 (11%)
Query: 316 VVELLLKYGASI-AATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLA 374
V+ + GAS+ T +G T LH+A+ + A LL+A A + G TPLH A
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 65
Query: 375 ARANQTDIVRILLRNGAS-VDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLA 433
A+ + +IL+RN A+ +DAR + G TPL LA
Sbjct: 66 VSADAQGVFQILIRNRATDLDARMHD--------------------------GTTPLILA 99
Query: 434 ARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGY 493
AR ++ L+ + A V+A ++ LH A+ + N D A +LL++GA+ D
Sbjct: 100 ARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREE 159
Query: 494 TALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDA 549
T L ++A+EG E A +L + A+ T P +A + I ++L + +
Sbjct: 160 TPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNL 215
Score = 207 bits (530), Expect = 5e-62
Identities = 58/231 (25%), Positives = 98/231 (42%), Gaps = 11/231 (4%)
Query: 73 GQEEVAKILVDNGATI-NVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITP 131
V + GA++ N G T L++AA+ + + LL + + TP
Sbjct: 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP 61
Query: 132 LHVACKWGKVAMVELLISKGA-NIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSK 190
LH A + ++LI A +++A+ DG TPL AAR + +++ LI A + +
Sbjct: 62 LHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV 121
Query: 191 TKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRK 250
G + LH A+ ++ A VL+ +GA D T L +A+ G AK LLD
Sbjct: 122 DDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHF 181
Query: 251 ADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNG 301
A+ + P IA ++ H + + L + + L+G
Sbjct: 182 ANRDITDHMDRLPRDIAQER--------MHHDIVRLLDEYNLVRSP-QLHG 223
Score = 206 bits (527), Expect = 1e-61
Identities = 65/264 (24%), Positives = 92/264 (34%), Gaps = 48/264 (18%)
Query: 143 MVELLISKGANIE-AKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMA 201
++ I +GA++ R G T LH AAR + L+E A + G PLH A
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 65
Query: 202 SQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGF 261
D + ++LI + A D +AR +G
Sbjct: 66 VSADAQGVFQILIRNRA--------------------------------TDLDARMHDGT 93
Query: 262 TPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLL 321
TPL +A + + + L++ AD NA G + LH A N +LL
Sbjct: 94 TPLILAARLA--------VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLL 145
Query: 322 KYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTD 381
K GA+ TPL +A+ G A LL A D P +A D
Sbjct: 146 KNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHD 205
Query: 382 IVRILLRNGASVDARAREDQTPLH 405
IVR+L LH
Sbjct: 206 IVRLLDEYNLVR-------SPQLH 222
Score = 205 bits (524), Expect = 4e-61
Identities = 69/271 (25%), Positives = 107/271 (39%), Gaps = 52/271 (19%)
Query: 345 GCMNIAIFLLQAGAAPDTATVR-GETPLHLAARANQTDIVRILLRNGASVDARAREDQTP 403
+ + GA+ T R GET LHLAAR +++D + LL A + +
Sbjct: 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNM---- 57
Query: 404 LHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGAS-VDARAREDQTP 462
G TPLH A A+ + +IL+RN A+ +DAR + TP
Sbjct: 58 ----------------------GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTP 95
Query: 463 LHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATT 522
L +A+RL + L+ A V+A G +ALH +A + A +L ++GA+
Sbjct: 96 LILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN 155
Query: 523 KKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLA 582
+ TPL LAA+ G + A++LL A+ T P +A
Sbjct: 156 NREETPLFLAAREGSYETAKVLLDH-----------------FANRDITDHMDRLPRDIA 198
Query: 583 AKYGRMKIAQMLLQKDAPVDSQGKNGVTPLH 613
+ I ++L LH
Sbjct: 199 QERMHHDIVRLLD-------EYNLVRSPQLH 222
Score = 199 bits (508), Expect = 7e-59
Identities = 73/263 (27%), Positives = 105/263 (39%), Gaps = 43/263 (16%)
Query: 204 GDHEAATRVLIYHGAGVDEITVDY-LTALHVASHCGHVRVAKTLLDRKADPNARALNGFT 262
GD A IY GA + T TALH+A+ AK LL+ AD N + G T
Sbjct: 1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRT 60
Query: 263 PLHIACKKNRYKSSHCNHVWVAKTLLDRKA-DPNARALNGFTPLHIACKKNRYKVVELLL 321
PLH A + V + L+ +A D +AR +G TPL +A + ++E L+
Sbjct: 61 PLHAAVSAD--------AQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLI 112
Query: 322 KYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTD 381
A + A + G + LH A+ + ++ A+ LL+ GA D R ETPL LAAR +
Sbjct: 113 NSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYE 172
Query: 382 IVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDI 441
++LL + A+ D P +A DI
Sbjct: 173 TAKVLLDHFANRDITDHM--------------------------DRLPRDIAQERMHHDI 206
Query: 442 VRILLRNGASVDARAREDQTPLH 464
VR+L LH
Sbjct: 207 VRLLDEYNLVR-------SPQLH 222
Score = 157 bits (401), Expect = 4e-44
Identities = 44/234 (18%), Positives = 75/234 (32%), Gaps = 52/234 (22%)
Query: 4 GHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCKAAALLLEVSFSNTKLEVSLSNTK 59
LLE + + + LH A
Sbjct: 36 SRSDAAKRLLEASADANIQDNMGRTPLHAAVSA--------------------------- 68
Query: 60 LEVSLSNTKFEATGQEEVAKILVDNGAT-INVQSLNGFTPLYMAAQENHDGVVRYLLSKG 118
+ V +IL+ N AT ++ + +G TPL +AA+ +G++ L++
Sbjct: 69 -------------DAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH 115
Query: 119 GNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVID 178
+ + + LH A V +L+ GAN + + TPL AAR G
Sbjct: 116 ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAK 175
Query: 179 ILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALH 232
+L++ A P +A + H R+L + LH
Sbjct: 176 VLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNL-------VRSPQLH 222
Score = 109 bits (276), Expect = 2e-27
Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 15/151 (9%)
Query: 685 GHTDMSSLLIEHGATVSHQA-KNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTP 743
+ S I GA++ +Q + G T LHL A+ + + A + A+ + G TP
Sbjct: 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP 61
Query: 744 LHIASHFGQLNMVRYLVENGA-NVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNAT 802
LH A + + L+ N A +++A + G TPL A++ +++ L+ + A NA
Sbjct: 62 LHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV 121
Query: 803 TN-----LFCCAT--------ILVKNGAEID 820
+ L A +L+KNGA D
Sbjct: 122 DDLGKSALHWAAAVNNVDAAVVLLKNGANKD 152
Score = 55.9 bits (136), Expect = 8e-09
Identities = 21/121 (17%), Positives = 36/121 (29%), Gaps = 44/121 (36%)
Query: 2 QQGHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCKAAALLLEVSFSNTKLEVSLSN 57
+ VLL+N D + + L +AA++
Sbjct: 134 AVNNVDAAVVLLKNGANKDMQNNREETPLFLAARE------------------------- 168
Query: 58 TKLEVSLSNTKFEATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSK 117
G E AK+L+D+ A ++ P +A + H +VR L
Sbjct: 169 ---------------GSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEY 213
Query: 118 G 118
Sbjct: 214 N 214
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 212 bits (542), Expect = 1e-63
Identities = 54/221 (24%), Positives = 81/221 (36%), Gaps = 16/221 (7%)
Query: 130 TPLHVACKWG-KVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGA--- 185
PLH AC + ELL SK + + K +DG PLH + + L+ K
Sbjct: 4 YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 63
Query: 186 ALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVD--EITVDYLTALHVASHCGHVRVA 243
+G P H+A + + L D +IT +T LH+A V+
Sbjct: 64 LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 123
Query: 244 KTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDR-KADPNARALNGF 302
+ L++ A + PLH A + + + L K+ N + G+
Sbjct: 124 QFLIENGASVRIKDKFNQIPLHRAASV--------GSLKLIELLCGLGKSAVNWQDKQGW 175
Query: 303 TPLHIACKKNRYKVVELLL-KYGASIAATTESGLTPLHVAS 342
TPL A + LL+ KYGA G VA
Sbjct: 176 TPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL 216
Score = 211 bits (540), Expect = 3e-63
Identities = 55/236 (23%), Positives = 89/236 (37%), Gaps = 19/236 (8%)
Query: 95 GFTPLYMAAQENH-DGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGAN 153
PL+ A EN V L SK + PLH + + + L+SK N
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61
Query: 154 I---EAKTRDGLTPLHCAARSGHDNVIDILIEK--GAALYSKTKNGLAPLHMASQGDHEA 208
+ + G TP H A G+ V+ L ++ L T G+ LH+A
Sbjct: 62 VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE 121
Query: 209 ATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDR-KADPNARALNGFTPLHIA 267
++ LI +GA V LH A+ G +++ + L K+ N + G+TPL A
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 181
Query: 268 CKKNRYKSSHCNHVWVAKTLLDRK-ADPNARALNGFTPLHIACKKNRYKVVELLLK 322
+ H A L+++ A+ + G +A + V + L
Sbjct: 182 LAE--------GHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQ---VKKFFLN 226
Score = 209 bits (535), Expect = 1e-62
Identities = 66/246 (26%), Positives = 94/246 (38%), Gaps = 30/246 (12%)
Query: 301 GFTPLHIACKKNRYK-VVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGA- 358
PLH AC +N + V ELL + + + G PLH + I FLL
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61
Query: 359 --APDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSA 416
D G TP H+A ++V+ L D +Q
Sbjct: 62 VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQ--------------- 106
Query: 417 SQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIAS 476
G T LHLA ++ + L+ NGASV + + +Q PLH A+ +G+ +
Sbjct: 107 ---------GVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIE 157
Query: 477 LLLQHGAS-VDAPTKDGYTALHISAKEGQDEVASILTES-GASITATTKKGFTPLHLAAK 534
LL G S V+ K G+T L + EG + A +L E GA KG +A
Sbjct: 158 LLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN 217
Query: 535 YGRMKI 540
K
Sbjct: 218 EQVKKF 223
Score = 205 bits (525), Expect = 3e-61
Identities = 59/275 (21%), Positives = 87/275 (31%), Gaps = 57/275 (20%)
Query: 525 GFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAK 584
PLH A V +L + + + G PLH +
Sbjct: 2 SNYPLHQACMENEFFK----------------VQELLHSKPSLLLQKDQDGRIPLHWSVS 45
Query: 585 YGRMKIAQMLLQKDAPV---DSQGKNGVTPLHVASHYDHQNVALLLLDR--GASPHAVAK 639
+ +I LL K V D +G TP H+A + V L DR + +
Sbjct: 46 FQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN 105
Query: 640 NGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGAT 699
G T LH+A K +++ L+E A + K PLH +A G + LL G
Sbjct: 106 QGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGK- 164
Query: 700 VSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYL 759
+ ++ K G+TPL A G + L
Sbjct: 165 -------------------------------SAVNWQDKQGWTPLFHALAEGHGDAAVLL 193
Query: 760 VEN-GANVNATTNLGYTPLHQASQQGRVLIIDLLL 793
VE GA + N G A + + L
Sbjct: 194 VEKYGAEYDLVDNKGAKAEDVALNEQ---VKKFFL 225
Score = 200 bits (512), Expect = 2e-59
Identities = 49/204 (24%), Positives = 82/204 (40%), Gaps = 7/204 (3%)
Query: 75 EEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGN---QTLATEHNITP 131
+V ++L + + + +G PL+ + + +LLSK N + TP
Sbjct: 16 FKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTP 75
Query: 132 LHVACKWGKVAMVELLISK--GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 189
H+AC G + +V+ L + ++ T G+T LH A V LIE GA++
Sbjct: 76 FHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI 135
Query: 190 KTKNGLAPLHMASQGDHEAATRVLIYHG-AGVDEITVDYLTALHVASHCGHVRVAKTLLD 248
K K PLH A+ +L G + V+ T L A GH A L++
Sbjct: 136 KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVE 195
Query: 249 RK-ADPNARALNGFTPLHIACKKN 271
+ A+ + G +A +
Sbjct: 196 KYGAEYDLVDNKGAKAEDVALNEQ 219
Score = 199 bits (508), Expect = 8e-59
Identities = 52/205 (25%), Positives = 85/205 (41%), Gaps = 8/205 (3%)
Query: 608 GVTPLHVASHYDHQN-VALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAK 666
PLH A + V LL + + ++G PLH + +I + LL
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61
Query: 667 PNAES---KAGFTPLHLSAQEGHTDMSSLLIEH--GATVSHQAKNGLTPLHLCAQEDKVN 721
N + +G+TP H++ G+ ++ L + ++ G+T LHL +
Sbjct: 62 VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE 121
Query: 722 VATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGAN-VNATTNLGYTPLHQA 780
V+ + NGA + K PLH A+ G L ++ L G + VN G+TPL A
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 181
Query: 781 SQQGRVLIIDLLLGA-GAQPNATTN 804
+G LL+ GA+ + N
Sbjct: 182 LAEGHGDAAVLLVEKYGAEYDLVDN 206
Score = 199 bits (508), Expect = 8e-59
Identities = 60/268 (22%), Positives = 97/268 (36%), Gaps = 51/268 (19%)
Query: 367 GETPLHLAARANQTDIVR-ILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVR 425
PLH A N+ V+ +L + + + ++
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQD-------------------------- 35
Query: 426 GETPLHLAARANQTDIVRILLRNGASVDARARED---QTPLHVASRLGNGDIASLLLQH- 481
G PLH + +I LL +V+ D TP H+A +GN ++ L
Sbjct: 36 GRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRP 95
Query: 482 -GASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKI 540
++ T G T LH++ + EV+ L E+GAS+ K PLH AA G +K+
Sbjct: 96 LKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKL 155
Query: 541 AQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKD-A 599
++L +++ K+G+TPL A G A +L++K A
Sbjct: 156 IELLCGLGK----------------SAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGA 199
Query: 600 PVDSQGKNGVTPLHVASHYDHQNVALLL 627
D G VA + L
Sbjct: 200 EYDLVDNKGAKAEDVALNEQV--KKFFL 225
Score = 189 bits (483), Expect = 2e-55
Identities = 56/221 (25%), Positives = 89/221 (40%), Gaps = 16/221 (7%)
Query: 197 PLHMASQ-GDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNA 255
PLH A + +L + + + D LH + + LL + + N
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 256 RAL---NGFTPLHIACKKNRYKSSHCNHVWVAKTLLDR--KADPNARALNGFTPLHIACK 310
+G+TP HIAC ++ V K+L DR K D N G T LH+A
Sbjct: 65 DDYPDDSGWTPFHIACSVG--------NLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVG 116
Query: 311 KNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAP-DTATVRGET 369
K ++V + L++ GAS+ + PLH A+ +G + + L G + + +G T
Sbjct: 117 KKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWT 176
Query: 370 PLHLAARANQTDIVRILL-RNGASVDARAREDQTPLHVASR 409
PL A D +L+ + GA D + VA
Sbjct: 177 PLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN 217
Score = 169 bits (432), Expect = 2e-48
Identities = 55/231 (23%), Positives = 91/231 (39%), Gaps = 16/231 (6%)
Query: 25 ALHIAAKKDDCKAAALLLEVSFSNTKLEVSLSNTKLEVSLSNTKFEATGQEEVAKILVDN 84
LH A +++ LL S + L S+S E+ L+
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSF------QAHEITSFLLSK 58
Query: 85 GATINVQSL---NGFTPLYMAAQENHDGVVRYLLSK--GGNQTLATEHNITPLHVACKWG 139
+N+ +G+TP ++A + VV+ L + + T +T LH+A
Sbjct: 59 MENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKK 118
Query: 140 KVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAA-LYSKTKNGLAPL 198
+ + LI GA++ K + PLH AA G +I++L G + + + K G PL
Sbjct: 119 WFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Query: 199 HMASQGDHEAATRVLI-YHGAGVDEITVDYLTALHVASHCGHVRVAKTLLD 248
A H A +L+ +GA D + A VA + V K L+
Sbjct: 179 FHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQ---VKKFFLN 226
Score = 137 bits (349), Expect = 5e-37
Identities = 44/226 (19%), Positives = 71/226 (31%), Gaps = 54/226 (23%)
Query: 2 QQGHDRVVAVLLEN-------DTKGKVKLPALHIAAKKDDCKAAALLLEVSFSNTKLEVS 54
+ + LL D HIA
Sbjct: 45 SFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV---------------------- 82
Query: 55 LSNTKLEVSLSNTKFEATGQEEVAKILVDN--GATINVQSLNGFTPLYMAAQENHDGVVR 112
G EV K L D +N + G T L++A + V +
Sbjct: 83 ------------------GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 113 YLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGAN-IEAKTRDGLTPLHCAARS 171
+L+ G + + + N PLH A G + ++ELL G + + + + G TPL A
Sbjct: 125 FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE 184
Query: 172 GHDNVIDILIEK-GAALYSKTKNGLAPLHMASQGDHEAATRVLIYH 216
GH + +L+EK GA G +A + + +
Sbjct: 185 GHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQV---KKFFLNN 227
Score = 34.7 bits (81), Expect = 0.081
Identities = 9/63 (14%), Positives = 18/63 (28%), Gaps = 14/63 (22%)
Query: 772 LGYTPLHQASQQGRVLII-DLLLGAGAQPNATTN-----LFC--------CATILVKNGA 817
+ PLHQA + + +LL + L + L+
Sbjct: 1 MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60
Query: 818 EID 820
++
Sbjct: 61 NVN 63
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 203 bits (519), Expect = 2e-60
Identities = 61/241 (25%), Positives = 93/241 (38%), Gaps = 29/241 (12%)
Query: 301 GFTPLHIACKKNRYKVV-ELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGA- 358
+PL +A K+N + + +LL G + G T LH+A+ + A+ L++A
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62
Query: 359 ----APDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFS 414
+ G+T LH+A ++VR LL GASV ARA + +
Sbjct: 63 LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYY-- 120
Query: 415 SASQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDI 474
GE PL AA +IVR+L+ +GA + A+ T LH+ N
Sbjct: 121 -----------GEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTF 169
Query: 475 AS----LLLQHGASVDA------PTKDGYTALHISAKEGQDEVASILTESGASITATTKK 524
A LLL + P G T ++ EG + L + I A
Sbjct: 170 ACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAAHHH 229
Query: 525 G 525
Sbjct: 230 H 230
Score = 188 bits (481), Expect = 4e-55
Identities = 54/229 (23%), Positives = 92/229 (40%), Gaps = 29/229 (12%)
Query: 575 GFTPLHLAAKYGRMK-IAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGA- 632
+PL LAAK ++ ++++L + V +G G T LH+A+ YD+ A++L++
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62
Query: 633 ----SPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESK-------------AGF 675
+ G T LHIA +++ LL A +A + G
Sbjct: 63 LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGE 122
Query: 676 TPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITM----FNGA 731
PL +A G ++ LLIEHGA + Q G T LH+ + A
Sbjct: 123 HPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDG 182
Query: 732 EID------PVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGY 774
G TP +A G + M ++L++ ++ A + +
Sbjct: 183 GDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAAHHHHH 231
Score = 185 bits (473), Expect = 6e-54
Identities = 51/230 (22%), Positives = 83/230 (36%), Gaps = 29/230 (12%)
Query: 130 TPLHVACKWGKV-AMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALY 188
+PL +A K V A+ +LL +G + + G T LH AA + +L+E L
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64
Query: 189 -----SKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYL-------------TA 230
S+ G LH+A + R L+ GA V +
Sbjct: 65 FEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHP 124
Query: 231 LHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDR 290
L A+ G + + L++ AD A+ G T LHI + + LL
Sbjct: 125 LSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTF----ACQMYNLLLSY 180
Query: 291 KADPNARAL------NGFTPLHIACKKNRYKVVELLLKYGASIAATTESG 334
+ ++L G TP +A + + + L++ IAA
Sbjct: 181 DGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAAHHHH 230
Score = 182 bits (464), Expect = 9e-53
Identities = 52/240 (21%), Positives = 93/240 (38%), Gaps = 36/240 (15%)
Query: 492 GYTALHISAKEGQ-DEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAP 550
+ L ++AKE ++ +L G + G T LH+AA Y ++ A +L++
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62
Query: 551 VDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKN--- 607
+ + +T+ +G T LH+A + + + LL + A V ++
Sbjct: 63 LVFE------------PMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVF 110
Query: 608 ----------GVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIA 657
G PL A+ + + LL++ GA A G T LHI + A
Sbjct: 111 HYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFA 170
Query: 658 TT----LLEYNAKPNAES------KAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNG 707
LL Y+ + +S G TP L+ EG+ M L++ ++ +
Sbjct: 171 CQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAAHHHH 230
Score = 179 bits (457), Expect = 9e-52
Identities = 54/262 (20%), Positives = 88/262 (33%), Gaps = 61/262 (23%)
Query: 260 GFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVEL 319
+PL +A K+N ++ ++K L + + R G T LHIA + + +
Sbjct: 3 WESPLLLAAKENDVQA-------LSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMV 55
Query: 320 LLKYGASIA-----ATTESGLTPLHVASFMGCMNIAIFLLQAGA-------------APD 361
L++ + + G T LH+A +N+ LL GA P
Sbjct: 56 LMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPH 115
Query: 362 TATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSAL 421
GE PL AA +IVR+L+ +GA + A+
Sbjct: 116 NLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSL---------------------- 153
Query: 422 TRVRGETPLHLAARANQTDIVR----ILLRNGASVDARARED------QTPLHVASRLGN 471
G T LH+ +LL ++ E TP +A GN
Sbjct: 154 ----GNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGN 209
Query: 472 GDIASLLLQHGASVDAPTKDGY 493
+ L+Q + A +
Sbjct: 210 IVMFQHLMQKRKHIAAAHHHHH 231
Score = 165 bits (420), Expect = 1e-46
Identities = 42/214 (19%), Positives = 87/214 (40%), Gaps = 28/214 (13%)
Query: 75 EEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGN-----QTLATEHNI 129
+ ++K+L G ++ + G T L++AA ++ L+ T
Sbjct: 17 QALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQ 76
Query: 130 TPLHVACKWGKVAMVELLISKGANIEAKTRD-------------GLTPLHCAARSGHDNV 176
T LH+A V +V L+++GA++ A+ G PL AA G + +
Sbjct: 77 TALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEI 136
Query: 177 IDILIEKGAALYSKTKNGLAPLHMASQGDHE----AATRVLIYHGAGVDEITVDY----- 227
+ +LIE GA + ++ G LH+ ++ +L+ + G +++
Sbjct: 137 VRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQ 196
Query: 228 -LTALHVASHCGHVRVAKTLLDRKADPNARALNG 260
LT +A G++ + + L+ ++ A +
Sbjct: 197 GLTPFKLAGVEGNIVMFQHLMQKRKHIAAAHHHH 230
Score = 165 bits (419), Expect = 1e-46
Identities = 53/252 (21%), Positives = 85/252 (33%), Gaps = 44/252 (17%)
Query: 161 GLTPLHCAARSGHDNVID-ILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGA- 218
+PL AA+ + +L +G ++ + G LH+A+ D+ A VL+
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62
Query: 219 ----GVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYK 274
+ + TALH+A +V + + LL R A +ARA
Sbjct: 63 LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYR--------- 113
Query: 275 SSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESG 334
P+ G PL A ++V LL+++GA I A G
Sbjct: 114 -------------------PHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLG 154
Query: 335 LTPLHVASFMGCMNIAI----FLLQAGA------APDTATVRGETPLHLAARANQTDIVR 384
T LH+ A LL +G TP LA + +
Sbjct: 155 NTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQ 214
Query: 385 ILLRNGASVDAR 396
L++ + A
Sbjct: 215 HLMQKRKHIAAA 226
Score = 157 bits (399), Expect = 8e-44
Identities = 51/242 (21%), Positives = 85/242 (35%), Gaps = 49/242 (20%)
Query: 608 GVTPLHVASHYDHQN-VALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNA- 665
+PL +A+ + ++ LL G H G T LHIAA + ++ A L+E
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62
Query: 666 ----KPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVN 721
+E G T LH++ + ++ L+ GA+VS +A +
Sbjct: 63 LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYR--------- 113
Query: 722 VATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQAS 781
+ G PL A+ G +VR L+E+GA++ A +LG T LH
Sbjct: 114 -----------PHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILI 162
Query: 782 QQGR----VLIIDLLLGAGAQPNATTNLFCC-------------------ATILVKNGAE 818
Q + +LLL + + L++
Sbjct: 163 LQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKH 222
Query: 819 ID 820
I
Sbjct: 223 IA 224
Score = 31.8 bits (73), Expect = 0.78
Identities = 10/67 (14%), Positives = 23/67 (34%), Gaps = 14/67 (20%)
Query: 772 LGYTPLHQASQQGRV-LIIDLLLGAGAQPNATTNLFC-------------CATILVKNGA 817
+ +PL A+++ V + LL G + + + A +L++
Sbjct: 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAP 61
Query: 818 EIDPVTK 824
E+
Sbjct: 62 ELVFEPM 68
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 202 bits (516), Expect = 4e-60
Identities = 73/243 (30%), Positives = 112/243 (46%), Gaps = 19/243 (7%)
Query: 525 GFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAK 584
+LA ++ + +L + T T + T LH A
Sbjct: 7 NIMICNLAYSGKLDELKERILAD-----------------KSLATRTDQDSRTALHWACS 49
Query: 585 YGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTP 644
G +I + LLQ PV+ + G +PLH+A+ + LL +GA +AV +NG TP
Sbjct: 50 AGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTP 109
Query: 645 LHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQA 704
LH AA KN+ +IA LLE A P+A+ T +H +A +G+ M +L+ + A+ + Q
Sbjct: 110 LHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQD 169
Query: 705 KNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGA 764
G TPLHL E++V A + GA I K TPL +A G L ++ + G
Sbjct: 170 TEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGLGLILKRLAEGE 227
Query: 765 NVN 767
+
Sbjct: 228 EAS 230
Score = 198 bits (504), Expect = 2e-58
Identities = 66/234 (28%), Positives = 102/234 (43%), Gaps = 10/234 (4%)
Query: 94 NGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGAN 153
+ +A D + +L+ T + + T LH AC G +VE L+ G
Sbjct: 6 SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 65
Query: 154 IEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVL 213
+ K G +PLH AA +G D ++ L+ KGA + + +NG PLH A+ + +L
Sbjct: 66 VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125
Query: 214 IYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRY 273
+ GA D TA+H A+ G++++ LL KA N + G TPLH+AC +
Sbjct: 126 LEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDE--- 182
Query: 274 KSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASI 327
V AK L+ + A TPL +A K ++ L G
Sbjct: 183 -----ERVEEAKFLVTQGASIYIENKEEKTPLQVA--KGGLGLILKRLAEGEEA 229
Score = 193 bits (491), Expect = 1e-56
Identities = 58/226 (25%), Positives = 98/226 (43%), Gaps = 2/226 (0%)
Query: 575 GFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASP 634
+LA ++ + +L + ++ T LH A H + LL G
Sbjct: 7 NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 66
Query: 635 HAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLI 694
+ G++PLHIAA +I LL A NA ++ G TPLH +A + +++ +L+
Sbjct: 67 NDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL 126
Query: 695 EHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLN 754
E GA + T +H A + + + I +F A + G TPLH+A ++
Sbjct: 127 EGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVE 186
Query: 755 MVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 800
++LV GA++ TPL A G + +I L G + +
Sbjct: 187 EAKFLVTQGASIYIENKEEKTPLQVAK--GGLGLILKRLAEGEEAS 230
Score = 186 bits (475), Expect = 2e-54
Identities = 69/243 (28%), Positives = 105/243 (43%), Gaps = 19/243 (7%)
Query: 426 GETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASV 485
+LA ++ +L + + ++ +T LH A G+ +I LLQ G V
Sbjct: 7 NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 66
Query: 486 DAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLL 545
+ G++ LHI+A G DE+ L GA + A + G TPLH AA R +IA MLL
Sbjct: 67 NDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL 126
Query: 546 QKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQG 605
+ GA+ A T +H AA G +K+ +LL A + Q
Sbjct: 127 EG-----------------GANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQD 169
Query: 606 KNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNA 665
G TPLH+A + A L+ +GAS + K TPL +A + + L
Sbjct: 170 TEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGLGLILKRLAEGE 227
Query: 666 KPN 668
+ +
Sbjct: 228 EAS 230
Score = 180 bits (457), Expect = 7e-52
Identities = 68/267 (25%), Positives = 104/267 (38%), Gaps = 43/267 (16%)
Query: 128 NITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAAL 187
NI ++A + E +++ + +D T LH A +GH +++ L++ G +
Sbjct: 7 NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 66
Query: 188 YSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLL 247
K G + LH+A+ G + K LL
Sbjct: 67 NDKDDAGW---------------------------------SPLHIAASAGXDEIVKALL 93
Query: 248 DRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHI 307
+ A NA NG TPLH A KN +A LL+ A+P+A+ T +H
Sbjct: 94 VKGAHVNAVNQNGCTPLHYAASKN--------RHEIAVMLLEGGANPDAKDHYDATAMHR 145
Query: 308 ACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRG 367
A K K+V +LL Y AS G TPLH+A + A FL+ GA+
Sbjct: 146 AAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEE 205
Query: 368 ETPLHLAARANQTDIVRILLRNGASVD 394
+TPL +A ++ L G
Sbjct: 206 KTPLQVAK--GGLGLILKRLAEGEEAS 230
Score = 179 bits (455), Expect = 1e-51
Identities = 65/260 (25%), Positives = 100/260 (38%), Gaps = 36/260 (13%)
Query: 259 NGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVE 318
+ ++A + + +L K+ + T LH AC ++VE
Sbjct: 6 SNIMICNLAYSGK--------LDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVE 57
Query: 319 LLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARAN 378
LL+ G + ++G +PLH+A+ G I LL GA + G TPLH AA N
Sbjct: 58 FLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKN 117
Query: 379 QTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQ 438
+ +I +LL GA+ DA+ T +H AA
Sbjct: 118 RHEIAVMLLEGGANPDAKDHY--------------------------DATAMHRAAAKGN 151
Query: 439 TDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHI 498
+V ILL AS + + E TPLH+A + A L+ GAS+ K+ T L +
Sbjct: 152 LKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQV 211
Query: 499 SAKEGQDEVASILTESGASI 518
+ G + G
Sbjct: 212 AK--GGLGLILKRLAEGEEA 229
Score = 174 bits (442), Expect = 8e-50
Identities = 66/264 (25%), Positives = 104/264 (39%), Gaps = 36/264 (13%)
Query: 190 KTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDR 249
+ + ++A G + ++ + D TALH A GH + + LL
Sbjct: 3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL 62
Query: 250 KADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIAC 309
N + G++PLHIA + + K LL + A NA NG TPLH A
Sbjct: 63 GVPVNDKDDAGWSPLHIAASAGXDE--------IVKALLVKGAHVNAVNQNGCTPLHYAA 114
Query: 310 KKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGET 369
KNR+++ +LL+ GA+ A T +H A+ G + + LL A+ + G T
Sbjct: 115 SKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNT 174
Query: 370 PLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETP 429
PLHLA + + + L+ GAS+ +E++TPL VA
Sbjct: 175 PLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA---------------------- 212
Query: 430 LHLAARANQTDIVRILLRNGASVD 453
++ L G
Sbjct: 213 ------KGGLGLILKRLAEGEEAS 230
Score = 172 bits (438), Expect = 3e-49
Identities = 55/213 (25%), Positives = 90/213 (42%)
Query: 607 NGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAK 666
+ + ++A + +L + ++ T LH A +I LL+
Sbjct: 6 SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 65
Query: 667 PNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATIT 726
N + AG++PLH++A G ++ L+ GA V+ +NG TPLH A +++ +A +
Sbjct: 66 VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125
Query: 727 MFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRV 786
+ GA D T +H A+ G L MV L+ A+ N G TPLH A + RV
Sbjct: 126 LEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERV 185
Query: 787 LIIDLLLGAGAQPNATTNLFCCATILVKNGAEI 819
L+ GA + K G +
Sbjct: 186 EEAKFLVTQGASIYIENKEEKTPLQVAKGGLGL 218
Score = 146 bits (369), Expect = 8e-40
Identities = 55/257 (21%), Positives = 95/257 (36%), Gaps = 46/257 (17%)
Query: 2 QQGHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCKAAALLLEVSFSNTKLEVSLSN 57
D + +L + + ALH A
Sbjct: 16 SGKLDELKERILADKSLATRTDQDSRTALHWACSA------------------------- 50
Query: 58 TKLEVSLSNTKFEATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSK 117
G E+ + L+ G +N + G++PL++AA D +V+ LL K
Sbjct: 51 ---------------GHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVK 95
Query: 118 GGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVI 177
G + ++ TPLH A + + +L+ GAN +AK T +H AA G+ ++
Sbjct: 96 GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMV 155
Query: 178 DILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHC 237
IL+ A+ + G PLH+A + + L+ GA + + T L VA
Sbjct: 156 HILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK-- 213
Query: 238 GHVRVAKTLLDRKADPN 254
G + + L + +
Sbjct: 214 GGLGLILKRLAEGEEAS 230
Score = 34.1 bits (78), Expect = 0.14
Identities = 16/93 (17%), Positives = 36/93 (38%), Gaps = 13/93 (13%)
Query: 2 QQGHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCKAAALLLEVSFSNTKLEVSLSN 57
+G+ ++V +LL + + LH+A ++ + A L+ ++ +E
Sbjct: 148 AKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQG-ASIYIENKEEK 206
Query: 58 TKLEVSLSNTKFEATGQEEVAKILVDNGATINV 90
T L+V A G + + G ++
Sbjct: 207 TPLQV--------AKGGLGLILKRLAEGEEASM 231
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 193 bits (492), Expect = 5e-57
Identities = 40/201 (19%), Positives = 81/201 (40%), Gaps = 5/201 (2%)
Query: 125 TEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKG 184
T L A + + E+L ++ +G TPL+ A + + LI++G
Sbjct: 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG 62
Query: 185 AALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAG-VDEITVDYLTALHVASHCGHVRVA 243
A + + +P A ++ H +++ AL A+ GH+
Sbjct: 63 ADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNV 122
Query: 244 KTLLDR-KADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGF 302
K LL+ + D + + G+T L A + + + K L++ AD + + +G
Sbjct: 123 KLLLEDGREDIDFQNDFGYTALIEAVGLR---EGNQLYQDIVKLLMENGADQSIKDNSGR 179
Query: 303 TPLHIACKKNRYKVVELLLKY 323
T + A +K ++ ++L +Y
Sbjct: 180 TAMDYANQKGYTEISKILAQY 200
Score = 176 bits (450), Expect = 3e-51
Identities = 48/215 (22%), Positives = 87/215 (40%), Gaps = 24/215 (11%)
Query: 489 TKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKD 548
T + L + + +V IL ++ + +G TPL++A ++IA+ L+ +
Sbjct: 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDR- 61
Query: 549 APVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAP-VDSQGKN 607
GA I +P A GR +I +L+ P ++ +
Sbjct: 62 ----------------GADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRY 105
Query: 608 GVTPLHVASHYDHQNVALLLLDRG-ASPHAVAKNGYTPLHIAA-----KKNQMDIATTLL 661
G L A+ H + LLL+ G GYT L A + DI L+
Sbjct: 106 GGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLM 165
Query: 662 EYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEH 696
E A + + +G T + + Q+G+T++S +L ++
Sbjct: 166 ENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200
Score = 176 bits (450), Expect = 4e-51
Identities = 47/211 (22%), Positives = 79/211 (37%), Gaps = 22/211 (10%)
Query: 460 QTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASIT 519
L A++ + +L VD +G T L+I+ E+A L + GA I
Sbjct: 7 GALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADIN 66
Query: 520 ATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPL 579
+P A GR +I +L+ + + G L
Sbjct: 67 LQNSISDSPYLYAGAQGRTEILAYMLKHAT----------------PDLNKHNRYGGNAL 110
Query: 580 HLAAKYGRMKIAQMLLQK-DAPVDSQGKNGVTPLHVASHYD-----HQNVALLLLDRGAS 633
AA+ G + ++LL+ +D Q G T L A +Q++ LL++ GA
Sbjct: 111 IPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGAD 170
Query: 634 PHAVAKNGYTPLHIAAKKNQMDIATTLLEYN 664
+G T + A +K +I+ L +YN
Sbjct: 171 QSIKDNSGRTAMDYANQKGYTEISKILAQYN 201
Score = 174 bits (444), Expect = 2e-50
Identities = 47/195 (24%), Positives = 88/195 (45%), Gaps = 7/195 (3%)
Query: 606 KNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNA 665
L A+ D + V +L D V G TPL+IA N ++IA L++ A
Sbjct: 4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGA 63
Query: 666 KPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGAT-VSHQAKNGLTPLHLCAQEDKVNVAT 724
N ++ +P + +G T++ + +++H ++ + G L A++ ++
Sbjct: 64 DINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVK 123
Query: 725 ITMFNG-AEIDPVTKAGFTPLHIASHF-----GQLNMVRYLVENGANVNATTNLGYTPLH 778
+ + +G +ID G+T L A ++V+ L+ENGA+ + N G T +
Sbjct: 124 LLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMD 183
Query: 779 QASQQGRVLIIDLLL 793
A+Q+G I +L
Sbjct: 184 YANQKGYTEISKILA 198
Score = 174 bits (444), Expect = 2e-50
Identities = 38/209 (18%), Positives = 76/209 (36%), Gaps = 22/209 (10%)
Query: 426 GETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASV 485
L A + + + IL VD E TPL++A + +IA L+ GA +
Sbjct: 6 VGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI 65
Query: 486 DAPTKDGYTALHISAKEGQDEVASILTESGAS-ITATTKKGFTPLHLAAKYGRMKIAQML 544
+ + + +G+ E+ + + + + + G L AA+ G + ++L
Sbjct: 66 NLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLL 125
Query: 545 LQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKY-----GRMKIAQMLLQKDA 599
L G+ I G+T L A I ++L++ A
Sbjct: 126 L-------EDGR---------EDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGA 169
Query: 600 PVDSQGKNGVTPLHVASHYDHQNVALLLL 628
+ +G T + A+ + ++ +L
Sbjct: 170 DQSIKDNSGRTAMDYANQKGYTEISKILA 198
Score = 171 bits (437), Expect = 2e-49
Identities = 46/206 (22%), Positives = 75/206 (36%), Gaps = 15/206 (7%)
Query: 157 KTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYH 216
KT + L A + V +IL + + G PL++A + + LI
Sbjct: 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDR 61
Query: 217 GAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKA-DPNARALNGFTPLHIACKKNRYKS 275
GA ++ + A G + +L D N G L A +K
Sbjct: 62 GADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEK----- 116
Query: 276 SHCNHVWVAKTLLDR-KADPNARALNGFTPLHIACKKNRYK-----VVELLLKYGASIAA 329
H+ K LL+ + D + + G+T L A +V+LL++ GA +
Sbjct: 117 ---GHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSI 173
Query: 330 TTESGLTPLHVASFMGCMNIAIFLLQ 355
SG T + A+ G I+ L Q
Sbjct: 174 KDNSGRTAMDYANQKGYTEISKILAQ 199
Score = 169 bits (430), Expect = 2e-48
Identities = 50/219 (22%), Positives = 84/219 (38%), Gaps = 33/219 (15%)
Query: 300 NGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAA 359
L A +++ KV E+L + G TPL++A + IA L+ GA
Sbjct: 5 EVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD 64
Query: 360 PDTATVRGETPLHLAARANQTDIVRILLRNGAS-VDARAREDQTPLHVASRLRRFSSASQ 418
+ ++P A +T+I+ +L++ ++ R
Sbjct: 65 INLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRY------------------- 105
Query: 419 SALTRVRGETPLHLAARANQTDIVRILLRNG-ASVDARAREDQTPLHVASRLGNG----- 472
G L AA D V++LL +G +D + T L A L G
Sbjct: 106 -------GGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQ 158
Query: 473 DIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASIL 511
DI LL+++GA G TA+ + ++G E++ IL
Sbjct: 159 DIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197
Score = 168 bits (428), Expect = 5e-48
Identities = 38/182 (20%), Positives = 75/182 (41%), Gaps = 7/182 (3%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
++V +IL D ++ G TPL +A N + + L+ +G + L + +P
Sbjct: 17 DTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPY 76
Query: 133 HVACKWGKVAMVELLISKGA-NIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAA-LYSK 190
A G+ ++ ++ ++ R G L AA GH + + +L+E G + +
Sbjct: 77 LYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQ 136
Query: 191 TKNGLAPLHMA-----SQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKT 245
G L A ++ ++L+ +GA TA+ A+ G+ ++K
Sbjct: 137 NDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKI 196
Query: 246 LL 247
L
Sbjct: 197 LA 198
Score = 165 bits (420), Expect = 4e-47
Identities = 46/225 (20%), Positives = 84/225 (37%), Gaps = 33/225 (14%)
Query: 331 TESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNG 390
T L A+ + L D G TPL++A N +I + L+ G
Sbjct: 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG 62
Query: 391 ASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGA 450
A ++ + ++P A +T+I+ +L++
Sbjct: 63 ADINLQNSI--------------------------SDSPYLYAGAQGRTEILAYMLKHAT 96
Query: 451 S-VDARAREDQTPLHVASRLGNGDIASLLLQHG-ASVDAPTKDGYTALHISA-----KEG 503
++ R L A+ G+ D LLL+ G +D GYTAL + +
Sbjct: 97 PDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQL 156
Query: 504 QDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKD 548
++ +L E+GA + G T + A + G +I+++L Q +
Sbjct: 157 YQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201
Score = 164 bits (419), Expect = 7e-47
Identities = 49/225 (21%), Positives = 82/225 (36%), Gaps = 31/225 (13%)
Query: 259 NGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVE 318
L A +++ V + L D + G TPL+IA N ++ +
Sbjct: 5 EVGALLEAANQRD--------TKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAK 56
Query: 319 LLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAA-PDTATVRGETPLHLAARA 377
L+ GA I +P A G I ++L+ + G L AA
Sbjct: 57 ALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEK 116
Query: 378 NQTDIVRILLRNG-ASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARA 436
D V++LL +G +D + T L A LR +
Sbjct: 117 GHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQ--------------------- 155
Query: 437 NQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQH 481
DIV++L+ NGA + +T + A++ G +I+ +L Q+
Sbjct: 156 LYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200
Score = 162 bits (413), Expect = 5e-46
Identities = 40/209 (19%), Positives = 81/209 (38%), Gaps = 24/209 (11%)
Query: 522 TKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHL 581
T + L A + K+ ++L ++ + +G TPL++
Sbjct: 3 TYEVGALLEAANQRDTKKVKEILQ-----------------DTTYQVDEVDTEGNTPLNI 45
Query: 582 AAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGAS-PHAVAKN 640
A ++IA+ L+ + A ++ Q +P A + +L + +
Sbjct: 46 AVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRY 105
Query: 641 GYTPLHIAAKKNQMDIATTLLEY-NAKPNAESKAGFTPLHLSA-----QEGHTDMSSLLI 694
G L AA+K +D LLE + ++ G+T L + + + D+ LL+
Sbjct: 106 GGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLM 165
Query: 695 EHGATVSHQAKNGLTPLHLCAQEDKVNVA 723
E+GA S + +G T + Q+ ++
Sbjct: 166 ENGADQSIKDNSGRTAMDYANQKGYTEIS 194
Score = 144 bits (366), Expect = 1e-39
Identities = 42/226 (18%), Positives = 79/226 (34%), Gaps = 51/226 (22%)
Query: 2 QQGHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCKAAALLLEVSFSNTKLEVSLSN 57
Q+ +V +L + D L+IA
Sbjct: 15 QRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHN------------------------- 49
Query: 58 TKLEVSLSNTKFEATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSK 117
E+AK L+D GA IN+Q+ +P A + ++ Y+L
Sbjct: 50 ---------------NDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKH 94
Query: 118 GG-NQTLATEHNITPLHVACKWGKVAMVELLISKG-ANIEAKTRDGLTPLHCAA-----R 170
+ + L A + G + V+LL+ G +I+ + G T L A
Sbjct: 95 ATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGN 154
Query: 171 SGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYH 216
+ +++ +L+E GA K +G + A+Q + +++L +
Sbjct: 155 QLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200
Score = 120 bits (304), Expect = 2e-31
Identities = 25/168 (14%), Positives = 58/168 (34%), Gaps = 35/168 (20%)
Query: 639 KNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGA 698
L A +++ + L + + + G TPL+++ +++ LI+ GA
Sbjct: 4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGA 63
Query: 699 TVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRY 758
+ +N +P A G+ ++ Y
Sbjct: 64 DI--NLQN-------------------------------SISDSPYLYAGAQGRTEILAY 90
Query: 759 LVENGA-NVNATTNLGYTPLHQASQQGRVLIIDLLLGAG-AQPNATTN 804
++++ ++N G L A+++G + + LLL G + +
Sbjct: 91 MLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQND 138
Score = 76.7 bits (190), Expect = 4e-16
Identities = 15/68 (22%), Positives = 23/68 (33%)
Query: 737 TKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAG 796
T L A+ + L + V+ G TPL+ A + I L+ G
Sbjct: 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG 62
Query: 797 AQPNATTN 804
A N +
Sbjct: 63 ADINLQNS 70
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 192 bits (491), Expect = 1e-56
Identities = 41/234 (17%), Positives = 67/234 (28%), Gaps = 23/234 (9%)
Query: 454 ARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTE 513
+ Q + A L + T T +G+ +
Sbjct: 7 KPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGL-----I 61
Query: 514 SGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTK 573
+ + PLH AAK G + + L + K
Sbjct: 62 PSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDN-----------------RVGVNGLDK 104
Query: 574 KGFTPLHLAAKYGRMKIAQMLL-QKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGA 632
G T L+ A G I +ML Q + ++ Q K G T LH A+ + ++ LLL +GA
Sbjct: 105 AGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGA 164
Query: 633 SPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGH 686
+A + +A + + S E H
Sbjct: 165 RTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHH 218
Score = 192 bits (489), Expect = 2e-56
Identities = 40/227 (17%), Positives = 63/227 (27%), Gaps = 21/227 (9%)
Query: 425 RGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGAS 484
G+ + A + L + T + G L
Sbjct: 11 PGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGR-----TGLIPSNY 65
Query: 485 VDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
V + LH +AK G ++ + K G T L+ A G I +ML
Sbjct: 66 VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEML 125
Query: 545 LQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQ 604
T+ + K G T LH AA G I Q+LL K A D +
Sbjct: 126 F----------------TQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLR 169
Query: 605 GKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKK 651
+A++ ++ A Y + +
Sbjct: 170 NIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLE 216
Score = 192 bits (489), Expect = 2e-56
Identities = 34/223 (15%), Positives = 71/223 (31%), Gaps = 14/223 (6%)
Query: 124 ATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEK 183
+ + A + + L + +I T T G +
Sbjct: 8 PVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGR-----TGLIP 62
Query: 184 GAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVA 243
+ + ++ PLH A++ + + R + + GV+ + TAL+ A H GH +
Sbjct: 63 SNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIV 122
Query: 244 KTLLDRK-ADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGF 302
+ L + + N + G T LH A K + + + LL + A + R +
Sbjct: 123 EMLFTQPNIELNQQNKLGDTALHAAAWK--------GYADIVQLLLAKGARTDLRNIEKK 174
Query: 303 TPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMG 345
+A +++ A + +
Sbjct: 175 LAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEH 217
Score = 191 bits (488), Expect = 3e-56
Identities = 42/244 (17%), Positives = 68/244 (27%), Gaps = 32/244 (13%)
Query: 294 PNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFL 353
P G + A + + L I T+ T + G
Sbjct: 5 PPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRT-----G 59
Query: 354 LQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRF 413
L + PLH AA+ +R L N V+ +
Sbjct: 60 LIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKA-------------- 105
Query: 414 SSASQSALTRVRGETPLHLAARANQTDIVRILLRN-GASVDARAREDQTPLHVASRLGNG 472
G T L+ A DIV +L ++ + + T LH A+ G
Sbjct: 106 ------------GSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYA 153
Query: 473 DIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLA 532
DI LLL GA D + A ++ + + A T + + + +
Sbjct: 154 DIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDS 213
Query: 533 AKYG 536
Sbjct: 214 DLEH 217
Score = 189 bits (482), Expect = 2e-55
Identities = 37/222 (16%), Positives = 63/222 (28%), Gaps = 14/222 (6%)
Query: 156 AKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIY 215
+ G + A + D L + + T + +
Sbjct: 7 KPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGR-----TGLI 61
Query: 216 HGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKS 275
V E LH A+ G++ + LD + N G T L+ AC
Sbjct: 62 PSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGG---- 117
Query: 276 SHCNHVWVAKTLLDRK-ADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESG 334
H + + L + + N + G T LH A K +V+LLL GA
Sbjct: 118 ----HKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEK 173
Query: 335 LTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAAR 376
+A+ C ++ A + +
Sbjct: 174 KLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDL 215
Score = 188 bits (480), Expect = 4e-55
Identities = 41/232 (17%), Positives = 63/232 (27%), Gaps = 23/232 (9%)
Query: 487 APTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQ 546
P K G + + + L I T T GR +
Sbjct: 7 KPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIP---- 62
Query: 547 KDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGK 606
+ + PLH AAK G + + L V+ K
Sbjct: 63 ------------------SNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDK 104
Query: 607 NGVTPLHVASHYDHQNVA-LLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNA 665
G T L+ A H H+++ +L + K G T LH AA K DI LL A
Sbjct: 105 AGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGA 164
Query: 666 KPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQE 717
+ + + ++ + A + E
Sbjct: 165 RTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLE 216
Score = 186 bits (475), Expect = 2e-54
Identities = 37/216 (17%), Positives = 69/216 (31%), Gaps = 6/216 (2%)
Query: 570 ATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLD 629
K G + A + L ++ + T + L
Sbjct: 7 KPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGR-----TGLI 61
Query: 630 RGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDM 689
A++ PLH AAK+ + L+ N KAG T L+ + GH D+
Sbjct: 62 PSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDI 121
Query: 690 SSLLIEH-GATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIAS 748
+L ++ Q K G T LH A + ++ + + GA D +A+
Sbjct: 122 VEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMAT 181
Query: 749 HFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQG 784
+ ++++ A + Y + +
Sbjct: 182 NAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEH 217
Score = 184 bits (469), Expect = 1e-53
Identities = 33/224 (14%), Positives = 67/224 (29%), Gaps = 14/224 (6%)
Query: 89 NVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLI 148
G ++ A L + G+ T+ + T G +
Sbjct: 6 PKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKG-----RTGL 60
Query: 149 SKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEA 208
+ + PLH AA+ G+ + + ++ + K G L+ A G H+
Sbjct: 61 IPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKD 120
Query: 209 ATRVLIYH-GAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIA 267
+L +++ TALH A+ G+ + + LL + A + R + +A
Sbjct: 121 IVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMA 180
Query: 268 CKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKK 311
+ K A + + +
Sbjct: 181 TNA--------ACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLE 216
Score = 183 bits (466), Expect = 4e-53
Identities = 44/226 (19%), Positives = 70/226 (30%), Gaps = 14/226 (6%)
Query: 185 AALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAK 244
K G + A L + IT T + G
Sbjct: 3 KPPPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGR----- 57
Query: 245 TLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTP 304
T L +A + PLH A K+ ++ + LD + N G T
Sbjct: 58 TGLIPSNYVAEQAESIDNPLHEAAKRG--------NLSWLRECLDNRVGVNGLDKAGSTA 109
Query: 305 LHIACKKNRYKVVELLL-KYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTA 363
L+ AC +VE+L + + + G T LH A++ G +I LL GA D
Sbjct: 110 LYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLR 169
Query: 364 TVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASR 409
+ + +A A +++ A ED +
Sbjct: 170 NIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDL 215
Score = 176 bits (449), Expect = 1e-50
Identities = 34/207 (16%), Positives = 66/207 (31%), Gaps = 6/207 (2%)
Query: 599 APVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIAT 658
P K G + A + L + T K +
Sbjct: 3 KPPPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGR----- 57
Query: 659 TLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQED 718
T L + ++++ PLH +A+ G+ +++ V+ K G T L+
Sbjct: 58 TGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGG 117
Query: 719 KVNVATITMFN-GAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPL 777
++ + E++ K G T LH A+ G ++V+ L+ GA +
Sbjct: 118 HKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAF 177
Query: 778 HQASQQGRVLIIDLLLGAGAQPNATTN 804
A+ ++ G A +
Sbjct: 178 DMATNAACASLLKKKQGTDAVRTLSNA 204
Score = 175 bits (446), Expect = 2e-50
Identities = 32/199 (16%), Positives = 66/199 (33%), Gaps = 6/199 (3%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
+ L I + T + + G++ E PL
Sbjct: 23 FEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLI-----PSNYVAEQAESIDNPL 77
Query: 133 HVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILI-EKGAALYSKT 191
H A K G ++ + + + + G T L+ A GH +++++L + L +
Sbjct: 78 HEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQN 137
Query: 192 KNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKA 251
K G LH A+ + ++L+ GA D ++ A +A++ + K A
Sbjct: 138 KLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDA 197
Query: 252 DPNARALNGFTPLHIACKK 270
+ + +
Sbjct: 198 VRTLSNAEDYLDDEDSDLE 216
Score = 152 bits (385), Expect = 5e-42
Identities = 30/162 (18%), Positives = 59/162 (36%), Gaps = 1/162 (0%)
Query: 80 ILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWG 139
+ + Q+ + PL+ AA+ + +R L + T L+ AC G
Sbjct: 58 TGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGG 117
Query: 140 KVAMVELLISK-GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPL 198
+VE+L ++ + + + G T LH AA G+ +++ +L+ KGA +
Sbjct: 118 HKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAF 177
Query: 199 HMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHV 240
MA+ + + A + + H
Sbjct: 178 DMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHHH 219
Score = 105 bits (263), Expect = 1e-25
Identities = 28/182 (15%), Positives = 58/182 (31%), Gaps = 27/182 (14%)
Query: 2 QQGHDRVVAVLLENDTKGKVKLPALHIAAKKDDCKAAALLLEVSFS-NTKLEVSLSNTKL 60
+G ++ + + + LH AAK+ + L+ N
Sbjct: 54 SKGRTGLIPSNYVAE-QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGL---------- 102
Query: 61 EVSLSNTKFEAT--------GQEEVAKILVDN-GATINVQSLNGFTPLYMAAQENHDGVV 111
K +T G +++ ++L +N Q+ G T L+ AA + + +V
Sbjct: 103 ------DKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIV 156
Query: 112 RYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARS 171
+ LL+KG L +A ++++ A + +
Sbjct: 157 QLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLE 216
Query: 172 GH 173
H
Sbjct: 217 HH 218
Score = 72.7 bits (179), Expect = 2e-14
Identities = 13/96 (13%), Positives = 29/96 (30%), Gaps = 8/96 (8%)
Query: 737 TKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAG 796
K G + A + + L ++ T++ T + + +GR +I A
Sbjct: 9 VKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAE 68
Query: 797 AQPNATTNLFC--------CATILVKNGAEIDPVTK 824
+ L + N ++ + K
Sbjct: 69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDK 104
Score = 36.1 bits (84), Expect = 0.026
Identities = 5/39 (12%), Positives = 9/39 (23%)
Query: 767 NATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNL 805
G + +A D L T++
Sbjct: 6 PKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDM 44
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 186 bits (475), Expect = 5e-55
Identities = 43/203 (21%), Positives = 73/203 (35%), Gaps = 34/203 (16%)
Query: 575 GFTPLHLAAKYGRMKIAQMLLQKDA-PVDSQGKNGVTPLHVASHYDHQNVALLLLDRGAS 633
+H A G + + L+K V+ + G TPL AS + LL+ GA
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Query: 634 PHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLL 693
PH +AK + L +A+ DI LLE + N G TPL + + H L
Sbjct: 62 PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEAL 121
Query: 694 IEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQL 753
+ GA ++ +A + G+TP+ +A G
Sbjct: 122 LARGADLTTEADS---------------------------------GYTPMDLAVALGYR 148
Query: 754 NMVRYLVENGANVNATTNLGYTP 776
+ + + + + + + P
Sbjct: 149 KVQQVIENHILKLFQSNLVPADP 171
Score = 183 bits (468), Expect = 6e-54
Identities = 41/186 (22%), Positives = 73/186 (39%), Gaps = 16/186 (8%)
Query: 525 GFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAK 584
+H A G + + L+K + ++GFTPL A+
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGD----------------NLVNKPDERGFTPLIWASA 45
Query: 585 YGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTP 644
+G ++ + LL+ A K + L +AS + ++ LLL+R + NG TP
Sbjct: 46 FGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTP 105
Query: 645 LHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQA 704
L A + N + LL A E+ +G+TP+ L+ G+ + ++ H +
Sbjct: 106 LLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSN 165
Query: 705 KNGLTP 710
P
Sbjct: 166 LVPADP 171
Score = 183 bits (468), Expect = 6e-54
Identities = 44/187 (23%), Positives = 70/187 (37%), Gaps = 18/187 (9%)
Query: 426 GETPLHLAARANQTDIVRILLRNGA-SVDARAREDQTPLHVASRLGNGDIASLLLQHGAS 484
+H A + D ++ LR G V+ TPL AS G + LL+ GA
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Query: 485 VDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
K+ +AL +++ G ++ +L E I G TPL A + +K + L
Sbjct: 62 PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEAL 121
Query: 545 LQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQ 604
L + GA +T G+TP+ LA G K+ Q++ +
Sbjct: 122 LAR-----------------GADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQS 164
Query: 605 GKNGVTP 611
P
Sbjct: 165 NLVPADP 171
Score = 182 bits (465), Expect = 1e-53
Identities = 35/170 (20%), Positives = 69/170 (40%), Gaps = 1/170 (0%)
Query: 95 GFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHN-ITPLHVACKWGKVAMVELLISKGAN 153
++ A + ++ L KG N + TPL A +G++ V L+ GA+
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Query: 154 IEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVL 213
++ + L A+ G+ +++ +L+E+ + NG PL A +G+H L
Sbjct: 62 PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEAL 121
Query: 214 IYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTP 263
+ GA + T + +A G+ +V + + + L P
Sbjct: 122 LARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171
Score = 181 bits (463), Expect = 3e-53
Identities = 39/176 (22%), Positives = 68/176 (38%), Gaps = 9/176 (5%)
Query: 130 TPLHVACKWGKVAMVELLISKGAN-IEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALY 188
+H G++ ++ + KG N + G TPL A+ G + L+E GA +
Sbjct: 4 LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH 63
Query: 189 SKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLD 248
K + L +AS G + +L+ ++ + T L A HV+ + LL
Sbjct: 64 ILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLA 123
Query: 249 RKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTP 304
R AD A +G+TP+ +A + V + + + L P
Sbjct: 124 RGADLTTEADSGYTPMDLAVAL--------GYRKVQQVIENHILKLFQSNLVPADP 171
Score = 173 bits (442), Expect = 2e-50
Identities = 44/190 (23%), Positives = 72/190 (37%), Gaps = 25/190 (13%)
Query: 367 GETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRG 426
+H A + D ++ LR G ++ + E G
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDER-------------------------G 36
Query: 427 ETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVD 486
TPL A+ + + VR LL GA A+E ++ L +AS G DI LLL+ ++
Sbjct: 37 FTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDIN 96
Query: 487 APTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQ 546
+G T L + + + L GA +T G+TP+ LA G K+ Q++
Sbjct: 97 IYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIEN 156
Query: 547 KDAPVDSQGK 556
+
Sbjct: 157 HILKLFQSNL 166
Score = 173 bits (441), Expect = 3e-50
Identities = 40/176 (22%), Positives = 63/176 (35%), Gaps = 9/176 (5%)
Query: 229 TALHVASHCGHVRVAKTLLDRKAD-PNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTL 287
++H + G + K L + + N GFTPL A + + L
Sbjct: 4 LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFG--------EIETVRFL 55
Query: 288 LDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCM 347
L+ ADP+ A + L +A +V LLL+ I +G TPL A +
Sbjct: 56 LEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHV 115
Query: 348 NIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTP 403
LL GA T G TP+ LA + +++ + + P
Sbjct: 116 KCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171
Score = 172 bits (440), Expect = 4e-50
Identities = 35/165 (21%), Positives = 63/165 (38%), Gaps = 1/165 (0%)
Query: 641 GYTPLHIAAKKNQMDIATTLLEYNA-KPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGAT 699
+H A + ++D L N + GFTPL ++ G + L+E GA
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Query: 700 VSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYL 759
AK + L L + ++ + + +I+ G TPL A + V L
Sbjct: 62 PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEAL 121
Query: 760 VENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTN 804
+ GA++ + GYTP+ A G + ++ + +
Sbjct: 122 LARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNL 166
Score = 161 bits (410), Expect = 5e-46
Identities = 41/204 (20%), Positives = 63/204 (30%), Gaps = 35/204 (17%)
Query: 260 GFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKAD-PNARALNGFTPLHIACKKNRYKVVE 318
+H + + K L + + N GFTPL A + V
Sbjct: 2 DSLSIHQLAAQG--------ELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVR 53
Query: 319 LLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARAN 378
LL++GA + + L +AS G +I LL+ + G TPL A R N
Sbjct: 54 FLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGN 113
Query: 379 QTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQ 438
V LL GA + A G TP+ LA
Sbjct: 114 HVKCVEALLARGADLTTEADS--------------------------GYTPMDLAVALGY 147
Query: 439 TDIVRILLRNGASVDARAREDQTP 462
+ +++ + + P
Sbjct: 148 RKVQQVIENHILKLFQSNLVPADP 171
Score = 148 bits (377), Expect = 2e-41
Identities = 33/201 (16%), Positives = 65/201 (32%), Gaps = 45/201 (22%)
Query: 2 QQGHDRVVAVLLEN-----DTKGKVKLPALHIAAKKDDCKAAALLLEVSFSNTKLEVSLS 56
QG + L + + L A+
Sbjct: 11 AQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAF------------------------ 46
Query: 57 NTKLEVSLSNTKFEATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLS 116
G+ E + L++ GA ++ + + L +A+ + +V LL
Sbjct: 47 ----------------GEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLE 90
Query: 117 KGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNV 176
+ + + + TPL A + V VE L+++GA++ + G TP+ A G+ V
Sbjct: 91 RDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKV 150
Query: 177 IDILIEKGAALYSKTKNGLAP 197
++ L+ P
Sbjct: 151 QQVIENHILKLFQSNLVPADP 171
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 189 bits (483), Expect = 7e-55
Identities = 68/320 (21%), Positives = 101/320 (31%), Gaps = 78/320 (24%)
Query: 292 ADPNARALNGFTPLHIACKKNRYKVVELLLKY-------GASIAAT-TESGLTPLHVASF 343
A L + A ++ + +E LL + E+G T L A
Sbjct: 4 AGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAML 63
Query: 344 ---MGCMNIAIFLLQAGAAPDTAT-----------VRGETPLHLAARANQTDIVRILLRN 389
G + LL D+ +G+T LH+A +V +L+ N
Sbjct: 64 NLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVEN 123
Query: 390 GASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNG 449
GA V A A D F GE PL LAA NQ IV+ LL+N
Sbjct: 124 GADVQAAANGDFFKKTKGRPGFYF------------GELPLSLAACTNQLAIVKFLLQNS 171
Query: 450 ---ASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDE 506
A + AR T LH + + + + T S
Sbjct: 172 WQPADISARDSVGNTVLHALVEVADNTVDN-----------------TKFVTSMYNEILI 214
Query: 507 VASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGA 566
+ + L + T +KG TPL LAA G++ + +LQ++
Sbjct: 215 LGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREI----------------- 257
Query: 567 SITATTKKGFTPLHLAAKYG 586
H AA +
Sbjct: 258 -------HEPECRHAAAHHH 270
Score = 164 bits (418), Expect = 5e-46
Identities = 57/362 (15%), Positives = 89/362 (24%), Gaps = 99/362 (27%)
Query: 149 SKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEA 208
S A + + A + ++ L+
Sbjct: 1 SVSAGEKPPRLYDRRSIFDAVAQSNCQELESLLP-------------------------- 34
Query: 209 ATRVLIYHGAGVDEITVDY-LTALHVAS---HCGHVRVAKTLLDRKADPNARALNGFTPL 264
+ + + T L A H G LLD ++
Sbjct: 35 FLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFV---- 90
Query: 265 HIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYG 324
A G T LHIA ++ +V LL++ G
Sbjct: 91 --------------------------NASYTDSYYKGQTALHIAIERRNMTLVTLLVENG 124
Query: 325 ASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVR 384
A + A GE PL LAA NQ IV+
Sbjct: 125 ADVQAAANGDFFKKT-------------------KGRPGFYFGELPLSLAACTNQLAIVK 165
Query: 385 ILLRNG---ASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDI 441
LL+N A + AR T LH + + T + +
Sbjct: 166 FLLQNSWQPADISARDSVGNTVLHALVEVADNT----------VDNTKFVTSMYNEILIL 215
Query: 442 VRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAK 501
L + R+ TPL +A+ G + + +LQ H +A
Sbjct: 216 GAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREI-------HEPECRHAAAH 268
Query: 502 EG 503
Sbjct: 269 HH 270
Score = 163 bits (415), Expect = 2e-45
Identities = 51/298 (17%), Positives = 89/298 (29%), Gaps = 52/298 (17%)
Query: 449 GASVDARAREDQTPLHVASRLGNGDIASLLLQ-------HGASVDAP-TKDGYTALH--- 497
A D+ + A N LL + + G T L
Sbjct: 3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAM 62
Query: 498 ISAKEGQDEVASILTESGASITATTK-----------KGFTPLHLAAKYGRMKIAQMLLQ 546
++ GQ++ ++L + + + KG T LH+A + M + +L++
Sbjct: 63 LNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVE 122
Query: 547 KDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQK---DAPVDS 603
A V + G PL LAA ++ I + LLQ A + +
Sbjct: 123 NGADVQAAANGDF---FKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISA 179
Query: 604 QGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEY 663
+ G T LH V + Y + I K L
Sbjct: 180 RDSVGNTVLHALVEVADNTVDNTKF---------VTSMYNEILILGAK--------LHPT 222
Query: 664 NAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVN 721
++ G TPL L+A G + + +++ + H A +
Sbjct: 223 LKLEEITNRKGLTPLALAASSGKIGVLAYILQREI-------HEPECRHAAAHHHHHH 273
Score = 156 bits (397), Expect = 4e-43
Identities = 45/277 (16%), Positives = 80/277 (28%), Gaps = 54/277 (19%)
Query: 116 SKGGNQTLATEHNITPLHVACKWGKVAMVELL-------ISKGANIEAKTRD-GLTPLHC 167
S + ++ + A +E L + + E K + G T L
Sbjct: 1 SVSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLK 60
Query: 168 A---ARSGHDNVIDILIEKGAALY-----------SKTKNGLAPLHMASQGDHEAATRVL 213
A +G ++ I +L++ G LH+A + + +L
Sbjct: 61 AMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLL 120
Query: 214 IYHGAGVDEITVDYL--------------TALHVASHCGHVRVAKTLLDR---KADPNAR 256
+ +GA V L +A+ + + K LL AD +AR
Sbjct: 121 VENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISAR 180
Query: 257 ALNGFTPLHIACKKNR--------YKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIA 308
G T LH + S + + + L G TPL +A
Sbjct: 181 DSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALA 240
Query: 309 CKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMG 345
+ V+ +L+ H A+
Sbjct: 241 ASSGKIGVLAYILQREI-------HEPECRHAAAHHH 270
Score = 148 bits (376), Expect = 3e-40
Identities = 49/272 (18%), Positives = 80/272 (29%), Gaps = 56/272 (20%)
Query: 565 GASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQG--------KNGVTPLHVAS 616
A + A + + LL + + G T L A
Sbjct: 3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAM 62
Query: 617 ---HYDHQNVALLLLDRGASPHAVAK-----------NGYTPLHIAAKKNQMDIATTLLE 662
H + LLLD ++ + G T LHIA ++ M + T L+E
Sbjct: 63 LNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVE 122
Query: 663 YNAKPNAESKAGF--------------TPLHLSAQEGHTDMSSLLIEHG---ATVSHQAK 705
A A + F PL L+A + L+++ A +S +
Sbjct: 123 NGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDS 182
Query: 706 NGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGAN 765
G T LH + V T + + L + L
Sbjct: 183 VGNTVLHALVEVADNTVDN-----------------TKFVTSMYNEILILGAKLHPTLKL 225
Query: 766 VNATTNLGYTPLHQASQQGRVLIIDLLLGAGA 797
T G TPL A+ G++ ++ +L
Sbjct: 226 EEITNRKGLTPLALAASSGKIGVLAYILQREI 257
Score = 142 bits (360), Expect = 4e-38
Identities = 42/320 (13%), Positives = 79/320 (24%), Gaps = 97/320 (30%)
Query: 25 ALHIAAKKDDCKAAALLLEVSFSNTKLEVSLSNTKLEVSLSNTKFEATGQEEVAKILVDN 84
++ A + +C+ LL +
Sbjct: 16 SIFDAVAQSNCQELESLL---------------------------------PFLQRSKKR 42
Query: 85 GATINVQSL-NGFTPLYMA---AQENHDGVVRYLLSKGGNQTLATEHNI----------- 129
+ G T L A + + LL +
Sbjct: 43 LTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQ 102
Query: 130 TPLHVACKWGKVAMVELLISKGANIEAKTRD--------------GLTPLHCAARSGHDN 175
T LH+A + + +V LL+ GA+++A G PL AA +
Sbjct: 103 TALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLA 162
Query: 176 VIDILIEKG---AALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALH 232
++ L++ A + ++ G LH + T
Sbjct: 163 IVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDN-----------------TKFV 205
Query: 233 VASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKA 292
+ + + + L G TPL +A + V +L R+
Sbjct: 206 TSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASS--------GKIGVLAYILQREI 257
Query: 293 DPNARALNGFTPLHIACKKN 312
+ H A +
Sbjct: 258 -------HEPECRHAAAHHH 270
Score = 115 bits (289), Expect = 1e-28
Identities = 35/168 (20%), Positives = 58/168 (34%), Gaps = 40/168 (23%)
Query: 73 GQEEVAKILVDNGATINVQSLNGF--------------TPLYMAAQENHDGVVRYLLSKG 118
+ +LV+NGA + + F PL +AA N +V++LL
Sbjct: 112 RNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNS 171
Query: 119 G---NQTLATEHNITPLHVACKWGK---------VAMVELLISKGANI-------EAKTR 159
+ + T LH + +M ++ GA + E R
Sbjct: 172 WQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNR 231
Query: 160 DGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHE 207
GLTPL AA SG V+ ++++ + H A+ H
Sbjct: 232 KGLTPLALAASSGKIGVLAYILQREI-------HEPECRHAAAHHHHH 272
Score = 100 bits (251), Expect = 1e-23
Identities = 39/194 (20%), Positives = 59/194 (30%), Gaps = 47/194 (24%)
Query: 631 GASPHAVAKNGYTPLHIAAKKNQMDIATTLLEY-------NAKPNA-ESKAGFTPLH--- 679
A + A ++ +LL + + + G T L
Sbjct: 3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAM 62
Query: 680 LSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKA 739
L+ G D +LL++ ++ F A
Sbjct: 63 LNLHNGQNDTIALLLDVAR----------------------KTDSLKQFVNASYTDSYYK 100
Query: 740 GFTPLHIASHFGQLNMVRYLVENGANVNATTN--------------LGYTPLHQASQQGR 785
G T LHIA + +V LVENGA+V A N G PL A+ +
Sbjct: 101 GQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQ 160
Query: 786 VLIIDLLLGAGAQP 799
+ I+ LL QP
Sbjct: 161 LAIVKFLLQNSWQP 174
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 188 bits (479), Expect = 1e-54
Identities = 49/296 (16%), Positives = 84/296 (28%), Gaps = 54/296 (18%)
Query: 492 GYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPV 551
G I ++ + G + K G A V
Sbjct: 1 GEVNKIIGSRTAGE-------------------GAMEYLIEWKDGHSPSWVPSSYIAADV 41
Query: 552 DSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTP 611
S+ + TP AA+ + LL+ D VD+ +NG T
Sbjct: 42 VSEYE--------------------TPWWTAARKADEQALSQLLE-DRDVDAVDENGRTA 80
Query: 612 LHVASHYDHQNVALLLLDRGASPHAV-AKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAE 670
L + LL + GA + G T LH+AA + ++ L+E A E
Sbjct: 81 LLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVE 140
Query: 671 SKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNG 730
+ G T L L+ + T ++ G + + + + + V I G
Sbjct: 141 DERGLTALELAREILKTTPKGNPMQFGRRIGLEK---VINVLEGQVFEYAEVDEIVEKRG 197
Query: 731 AEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRV 786
G ++ + + A A L A + +
Sbjct: 198 --------KGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKDY--EDGLEYAVAESVI 243
Score = 187 bits (478), Expect = 2e-54
Identities = 57/276 (20%), Positives = 96/276 (34%), Gaps = 49/276 (17%)
Query: 426 GETPLHLAARAN--------------QTDIVRILLRNGASVDARAREDQTPLHVASRLGN 471
GE + +R + A V + E +TP A+R +
Sbjct: 1 GEVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS---EYETPWWTAARKAD 57
Query: 472 GDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKK-GFTPLH 530
S LL VDA ++G TAL A G D+ +L E+GA + + G T LH
Sbjct: 58 EQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALH 116
Query: 531 LAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKI 590
+AA Y R ++ + L++ GA I ++G T L LA + +
Sbjct: 117 MAAGYVRPEVVEALVEL-----------------GADIEVEDERGLTALELAREILKTTP 159
Query: 591 AQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAK 650
+Q + + V + +++ V ++ RG G ++
Sbjct: 160 KGNPMQFGRRIGLE---KVINVLEGQVFEYAEVDEIVEKRGK--------GKDVEYLVRW 208
Query: 651 KNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGH 686
K+ D + A+ A K L + E
Sbjct: 209 KDGGDCEWVKGVHVAEDVA--KDYEDGLEYAVAESV 242
Score = 184 bits (470), Expect = 2e-53
Identities = 45/314 (14%), Positives = 85/314 (27%), Gaps = 78/314 (24%)
Query: 95 GFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANI 154
G + ++ +G + K G A++
Sbjct: 1 GEVNKIIGSRTAGEGA-------------------MEYLIEWKDGHSPSWVPSSYIAADV 41
Query: 155 EAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLI 214
++ TP AAR + + L+
Sbjct: 42 VSE---YETPWWTAARKADEQALSQLL--------------------------------- 65
Query: 215 YHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNAR-ALNGFTPLHIACKKNRY 273
VD + + TAL + G + + L + AD + R G T LH+A
Sbjct: 66 -EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV-- 122
Query: 274 KSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTES 333
V + L++ AD G T L +A + + +++G I
Sbjct: 123 ------RPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLE--- 173
Query: 334 GLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASV 393
+ + + + + G G+ +L + D + + A
Sbjct: 174 KVINVLEGQVFEYAEVDEIVEKRGK--------GKDVEYLVRWKDGGDCEWVKGVHVAED 225
Query: 394 DARAREDQTPLHVA 407
A+ E L A
Sbjct: 226 VAKDYE--DGLEYA 237
Score = 172 bits (437), Expect = 7e-49
Identities = 47/294 (15%), Positives = 73/294 (24%), Gaps = 59/294 (20%)
Query: 295 NARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLL 354
+ A G I K A + + TP A+ LL
Sbjct: 9 SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADEQALSQLL 65
Query: 355 QAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFS 414
+ D G T L A VR+L GA +D R
Sbjct: 66 E-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG-------------- 110
Query: 415 SASQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDI 474
G T LH+AA + ++V L+ GA ++ T L +A +
Sbjct: 111 -----------GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTP 159
Query: 475 ASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAK 534
+Q G + + + EV I+ + G G +L
Sbjct: 160 KGNPMQFGRRIGL---EKVINVLEGQVFEYAEVDEIVEKRGK--------GKDVEYLVRW 208
Query: 535 YGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRM 588
+ A A + L A +
Sbjct: 209 KDGGDCEWVKGVH-----------------VAEDVAKDYE--DGLEYAVAESVI 243
Score = 163 bits (415), Expect = 9e-46
Identities = 48/248 (19%), Positives = 79/248 (31%), Gaps = 22/248 (8%)
Query: 555 GKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHV 614
G+V I+ + T +G + K G A V S+ + TP
Sbjct: 1 GEVNKII------GSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYE---TPWWT 51
Query: 615 ASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNA-ESKA 673
A+ + LL+ AV +NG T L A L E A + + +
Sbjct: 52 AARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG 110
Query: 674 GFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEI 733
G T LH++A ++ L+E GA + + + GLT L L + K M G I
Sbjct: 111 GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRI 170
Query: 734 DPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLL 793
+ F + + + G G + + +
Sbjct: 171 G---LEKVINVLEGQVFEYAEVDEIVEKRGK--------GKDVEYLVRWKDGGDCEWVKG 219
Query: 794 GAGAQPNA 801
A+ A
Sbjct: 220 VHVAEDVA 227
Score = 160 bits (407), Expect = 1e-44
Identities = 43/256 (16%), Positives = 83/256 (32%), Gaps = 25/256 (9%)
Query: 25 ALHIAAKKDDCKAAALLLEVSFSNTKLEVSLSNTKLEVSLSNTKFE-------ATGQEEV 77
I ++ A L+E ++ V S +V +++E E+
Sbjct: 4 NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQA 60
Query: 78 AKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLA-TEHNITPLHVAC 136
L++ ++ NG T L A D VR L G + +T LH+A
Sbjct: 61 LSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA 119
Query: 137 KWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLA 196
+ + +VE L+ GA+IE + GLT L A ++ G + + +
Sbjct: 120 GYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLE---KVI 176
Query: 197 PLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNAR 256
+ ++ ++ G G ++ A+ A+
Sbjct: 177 NVLEGQVFEYAEVDEIVEKRGKGK--------DVEYLVRWKDGGDCEWVKGVHVAEDVAK 228
Query: 257 ALNGFTPLHIACKKNR 272
+ L A ++
Sbjct: 229 --DYEDGLEYAVAESV 242
Score = 149 bits (378), Expect = 8e-41
Identities = 45/247 (18%), Positives = 69/247 (27%), Gaps = 57/247 (23%)
Query: 575 GFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASP 634
G + ++ G + H + A
Sbjct: 1 GEVNKIIGSR-------------------TAGEGAMEYLIEWKDGHSPSWVPSSYIAAD- 40
Query: 635 HAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLI 694
V TP AA+K + LLE + +A + G T L A G LL
Sbjct: 41 --VVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLA 97
Query: 695 EHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLN 754
E GA + H+ G G T LH+A+ + +
Sbjct: 98 EAGADLDHRDMRG--------------------------------GLTALHMAAGYVRPE 125
Query: 755 MVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNA--TTNLFCCATIL 812
+V LVE GA++ G T L A + + + G + N+
Sbjct: 126 VVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFE 185
Query: 813 VKNGAEI 819
EI
Sbjct: 186 YAEVDEI 192
Score = 133 bits (337), Expect = 3e-35
Identities = 44/252 (17%), Positives = 83/252 (32%), Gaps = 45/252 (17%)
Query: 2 QQGHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCKAAALLLEVSFSNTKLEVSLSN 57
+ GH ++ + AA+K D +A + LLE +
Sbjct: 24 KDGHSPSWVPSSYIAADVVSEYET---PWWTAARKADEQALSQLLEDRDVDAV------- 73
Query: 58 TKLEVSLSNTKFEAT--------GQEEVAKILVDNGATINVQ-SLNGFTPLYMAAQENHD 108
+ T G ++ ++L + GA ++ + G T L+MAA
Sbjct: 74 ---------DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRP 124
Query: 109 GVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCA 168
VV L+ G + + E +T L +A + K + G I + + +
Sbjct: 125 EVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLE---KVINVLEG 181
Query: 169 ARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYL 228
+ V +I+ ++G G ++ D V H A +++ DY
Sbjct: 182 QVFEYAEVDEIVEKRGK--------GKDVEYLVRWKDGGDCEWVKGVHVA--EDVAKDYE 231
Query: 229 TALHVASHCGHV 240
L A +
Sbjct: 232 DGLEYAVAESVI 243
Score = 37.6 bits (88), Expect = 0.010
Identities = 17/130 (13%), Positives = 30/130 (23%), Gaps = 27/130 (20%)
Query: 2 QQGHDRVVAVLLEN-------DTKGKVKLPALHIAAKKDDCKAAALLLEV-----SFSNT 49
VV L+E D +G AL +A + ++
Sbjct: 120 GYVRPEVVEALVELGADIEVEDERGL---TALELAREILKTTPKGNPMQFGRRIGLEKVI 176
Query: 50 KLEVSLSNTKLEVSLSNTKFEA----------TGQEEVAKILVDNGATINVQSLNGFTPL 99
+ EV K + + + A + + L
Sbjct: 177 NVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAK--DYEDGL 234
Query: 100 YMAAQENHDG 109
A E+ G
Sbjct: 235 EYAVAESVIG 244
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 185 bits (472), Expect = 1e-54
Identities = 44/181 (24%), Positives = 73/181 (40%), Gaps = 17/181 (9%)
Query: 525 GFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAK 584
+H A G M +++ I T ++GFTPL AA
Sbjct: 3 NSLSVHQLAAQGEMLYLATRIEQ-----------------ENVINHTDEEGFTPLMWAAA 45
Query: 585 YGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTP 644
+G++ + + LLQ A GK + L +A + ++ +LLD G + NG TP
Sbjct: 46 HGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTP 105
Query: 645 LHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQA 704
L A N + LLE A P E+ +G+ + L+ G+ + ++ H +
Sbjct: 106 LLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNI 165
Query: 705 K 705
K
Sbjct: 166 K 166
Score = 179 bits (458), Expect = 1e-52
Identities = 36/197 (18%), Positives = 65/197 (32%), Gaps = 33/197 (16%)
Query: 575 GFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASP 634
+H A G M ++++ ++ + G TPL A+ + V LL GA P
Sbjct: 3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP 62
Query: 635 HAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLI 694
+ K + L +A K DI LL+ N G TPL + H +L+
Sbjct: 63 QLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLL 122
Query: 695 EHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLN 754
E GA + + + G+ + +A G +
Sbjct: 123 ESGADPTIETDS---------------------------------GYNSMDLAVALGYRS 149
Query: 755 MVRYLVENGANVNATTN 771
+ + + + +
Sbjct: 150 VQQVIESHLLKLLQNIK 166
Score = 179 bits (458), Expect = 1e-52
Identities = 38/171 (22%), Positives = 65/171 (38%), Gaps = 8/171 (4%)
Query: 127 HNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAA 186
N +H G++ + I + I +G TPL AA G V++ L++ GA
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61
Query: 187 LYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTL 246
K + L +A + ++L+ G V+E + T L A H HV+ K L
Sbjct: 62 PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKML 121
Query: 247 LDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNAR 297
L+ ADP +G+ + +A + V + +
Sbjct: 122 LESGADPTIETDSGYNSMDLAVAL--------GYRSVQQVIESHLLKLLQN 164
Score = 179 bits (457), Expect = 1e-52
Identities = 38/198 (19%), Positives = 69/198 (34%), Gaps = 33/198 (16%)
Query: 607 NGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAK 666
+H + +++ + + G+TPL AA Q+ + LL+ A
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61
Query: 667 PNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATIT 726
P K + L L+ +G+TD+ +L++ G V+ N
Sbjct: 62 PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWN-------------------- 101
Query: 727 MFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRV 786
G TPL A H + V+ L+E+GA+ T+ GY + A G
Sbjct: 102 -------------GGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 148
Query: 787 LIIDLLLGAGAQPNATTN 804
+ ++ +
Sbjct: 149 SVQQVIESHLLKLLQNIK 166
Score = 179 bits (457), Expect = 2e-52
Identities = 32/163 (19%), Positives = 64/163 (39%)
Query: 94 NGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGAN 153
++ A + + + + E TPL A G++A+VE L+ GA+
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61
Query: 154 IEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVL 213
+ + + L A G+ +++ +L++ G + NG PL A G+H ++L
Sbjct: 62 PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKML 121
Query: 214 IYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNAR 256
+ GA T ++ +A G+ V + +
Sbjct: 122 LESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQN 164
Score = 178 bits (454), Expect = 4e-52
Identities = 38/182 (20%), Positives = 65/182 (35%), Gaps = 17/182 (9%)
Query: 425 RGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGAS 484
+H A + + + ++ E TPL A+ G + LLQ+GA
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61
Query: 485 VDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
K +AL ++ +G ++ +L + G + G TPL A +K +ML
Sbjct: 62 PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKML 121
Query: 545 LQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQ 604
L+ GA T T G+ + LA G + Q++ +
Sbjct: 122 LES-----------------GADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQN 164
Query: 605 GK 606
K
Sbjct: 165 IK 166
Score = 176 bits (450), Expect = 1e-51
Identities = 39/171 (22%), Positives = 67/171 (39%), Gaps = 8/171 (4%)
Query: 229 TALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLL 288
++H + G + T ++++ N GFTPL A + V + LL
Sbjct: 5 LSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHG--------QIAVVEFLL 56
Query: 289 DRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMN 348
ADP + L +AC K +V++LL G + +G TPL A +
Sbjct: 57 QNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVK 116
Query: 349 IAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARARE 399
LL++GA P T G + LA + +++ + + +E
Sbjct: 117 CVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIKE 167
Score = 173 bits (441), Expect = 3e-50
Identities = 38/150 (25%), Positives = 66/150 (44%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
G+ ++ IN GFTPL AA VV +LL G + L + + L
Sbjct: 14 GEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESAL 73
Query: 133 HVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTK 192
+AC G +V++L+ G ++ +G TPL A H + +L+E GA +T
Sbjct: 74 SLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETD 133
Query: 193 NGLAPLHMASQGDHEAATRVLIYHGAGVDE 222
+G + +A + + +V+ H + +
Sbjct: 134 SGYNSMDLAVALGYRSVQQVIESHLLKLLQ 163
Score = 168 bits (428), Expect = 1e-48
Identities = 42/192 (21%), Positives = 66/192 (34%), Gaps = 26/192 (13%)
Query: 333 SGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGAS 392
+ +H + G M ++ + G TPL AA Q +V LL+NGA
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61
Query: 393 VDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGASV 452
+ E+ L LA TDIV++LL G V
Sbjct: 62 PQLLGKG--------------------------RESALSLACSKGYTDIVKMLLDCGVDV 95
Query: 453 DARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILT 512
+ TPL A + +LL+ GA T GY ++ ++ G V ++
Sbjct: 96 NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIE 155
Query: 513 ESGASITATTKK 524
+ K+
Sbjct: 156 SHLLKLLQNIKE 167
Score = 165 bits (420), Expect = 2e-47
Identities = 38/200 (19%), Positives = 63/200 (31%), Gaps = 34/200 (17%)
Query: 259 NGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVE 318
+H + + T ++++ N GFTPL A + VVE
Sbjct: 2 ANSLSVHQLAAQG--------EMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVE 53
Query: 319 LLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARAN 378
LL+ GA + + L +A G +I LL G + G TPL A N
Sbjct: 54 FLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGN 113
Query: 379 QTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQ 438
V++LL +GA G + LA
Sbjct: 114 HVKCVKMLLESGADPTIETDS--------------------------GYNSMDLAVALGY 147
Query: 439 TDIVRILLRNGASVDARARE 458
+ +++ + + +E
Sbjct: 148 RSVQQVIESHLLKLLQNIKE 167
Score = 147 bits (373), Expect = 4e-41
Identities = 38/198 (19%), Positives = 66/198 (33%), Gaps = 46/198 (23%)
Query: 640 NGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGAT 699
+H A + +M T +E N + GFTPL +A G + L+++GA
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61
Query: 700 VSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYL 759
K + L +A G ++V+ L
Sbjct: 62 PQLLGKGR---------------------------------ESALSLACSKGYTDIVKML 88
Query: 760 VENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTN-----LFC------- 807
++ G +VN G TPL A V + +LL +GA P T+ +
Sbjct: 89 LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 148
Query: 808 -CATILVKNGAEIDPVTK 824
++ + ++ K
Sbjct: 149 SVQQVIESHLLKLLQNIK 166
Score = 144 bits (366), Expect = 5e-40
Identities = 36/195 (18%), Positives = 61/195 (31%), Gaps = 44/195 (22%)
Query: 2 QQGHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCKAAALLLEVSFSNTKLEVSLSN 57
QG +A +E + + L AA
Sbjct: 12 AQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAH------------------------- 46
Query: 58 TKLEVSLSNTKFEATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSK 117
GQ V + L+ NGA + + L +A + + +V+ LL
Sbjct: 47 ---------------GQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDC 91
Query: 118 GGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVI 177
G + + TPL A V V++L+ GA+ +T G + A G+ +V
Sbjct: 92 GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQ 151
Query: 178 DILIEKGAALYSKTK 192
++ L K
Sbjct: 152 QVIESHLLKLLQNIK 166
Score = 113 bits (285), Expect = 4e-29
Identities = 35/163 (21%), Positives = 57/163 (34%), Gaps = 44/163 (26%)
Query: 2 QQGHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCKAAALLLEVSFSNTKLEVSLSN 57
G VV LL+N GK + AL +A K
Sbjct: 45 AHGQIAVVEFLLQNGADPQLLGKGRESALSLACSK------------------------- 79
Query: 58 TKLEVSLSNTKFEATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSK 117
G ++ K+L+D G +N NG TPL A NH V+ LL
Sbjct: 80 ---------------GYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES 124
Query: 118 GGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRD 160
G + T+ T+ + +A G ++ +++ S + ++
Sbjct: 125 GADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIKE 167
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 187 bits (476), Expect = 3e-54
Identities = 63/276 (22%), Positives = 96/276 (34%), Gaps = 55/276 (19%)
Query: 303 TPLHIACKKNRYKVVELLLKY--------GASIAATTESGLTPLHVASFM---GCMNIAI 351
L + + + LL+Y S +G T L A G +
Sbjct: 4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63
Query: 352 FLLQAGAAPDTATV-----------RGETPLHLAARANQTDIVRILLRNGASVDARARED 400
LLQ +G + LH+A V++L+ NGA V RA
Sbjct: 64 PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGR 123
Query: 401 QTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNG---ASVDARAR 457
H + GE PL LAA Q D+V LL N AS++A
Sbjct: 124 FFQKHQGT-------------CFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDS 170
Query: 458 EDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGAS 517
T LH + A +AL I +G ++ + L +
Sbjct: 171 LGNTVLHALV-----------------MIADNSPENSALVIHMYDGLLQMGARLCPTVQL 213
Query: 518 ITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDS 553
+ +G TPL LAAK G+++I + +LQ++ +
Sbjct: 214 EEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAA 249
Score = 163 bits (415), Expect = 9e-46
Identities = 57/315 (18%), Positives = 82/315 (26%), Gaps = 90/315 (28%)
Query: 229 TALHVASHCGHVRVAKTLLD--------RKADPNARALNGFTPLHIACKKNRYKSSHCNH 280
L G LL+ G T L A +
Sbjct: 4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVL-----NLQDGV 58
Query: 281 VWVAKTLLDRKADP-----------NARALNGFTPLHIACKKNRYKVVELLLKYGASIAA 329
LL D G + LHIA +K + V+LL++ GA +
Sbjct: 59 NACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHL 118
Query: 330 TTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRN 389
H T GE PL LAA Q D+V LL N
Sbjct: 119 RACGRFFQKH--------------------QGTCFYFGELPLSLAACTKQWDVVTYLLEN 158
Query: 390 G---ASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILL 446
AS++A T LH
Sbjct: 159 PHQPASLEATDSLGNTVLHALV-------------------------------------- 180
Query: 447 RNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDE 506
+ A + + L + G + + L + G T L ++AKEG+ E
Sbjct: 181 -----MIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIE 235
Query: 507 VASILTESGASITAT 521
+ + + S A
Sbjct: 236 IFRHILQREFSGAAA 250
Score = 162 bits (411), Expect = 3e-45
Identities = 49/266 (18%), Positives = 78/266 (29%), Gaps = 55/266 (20%)
Query: 577 TPLHLAAKYGRMKIAQMLLQK--------DAPVDSQGKNGVTPLHVA---SHYDHQNVAL 625
L G + LL+ ++G G T L A +
Sbjct: 4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63
Query: 626 LLLDRG-----------ASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNA----- 669
LL A G++ LHIA +K + L+E A +
Sbjct: 64 PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGR 123
Query: 670 --------ESKAGFTPLHLSAQEGHTDMSSLLIEHG---ATVSHQAKNGLTPLHLCAQED 718
G PL L+A D+ + L+E+ A++ G T LH
Sbjct: 124 FFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIA 183
Query: 719 KVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLH 778
+ L I + G L M L + + G TPL
Sbjct: 184 D-----------------NSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLK 226
Query: 779 QASQQGRVLIIDLLLGAGAQPNATTN 804
A+++G++ I +L A +
Sbjct: 227 LAAKEGKIEIFRHILQREFSGAAAHH 252
Score = 156 bits (396), Expect = 4e-43
Identities = 45/265 (16%), Positives = 84/265 (31%), Gaps = 46/265 (17%)
Query: 459 DQTPLHVASRLGNGDIASLLLQH--------GASVDAPTKDGYTALHISA---KEGQDEV 507
D+ L G + + LL++ S G T L + ++G +
Sbjct: 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61
Query: 508 ASILTESG-----------ASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGK 556
L + A T +G + LH+A + ++ ++L++ A V +
Sbjct: 62 IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRAC 121
Query: 557 VASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQK---DAPVDSQGKNGVTPLH 613
G G PL LAA + + LL+ A +++ G T LH
Sbjct: 122 GRFFQKHQG----TCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLH 177
Query: 614 VASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKA 673
+ + L I + + L +
Sbjct: 178 ALVMIADNS-----------------PENSALVIHMYDGLLQMGARLCPTVQLEEISNHQ 220
Query: 674 GFTPLHLSAQEGHTDMSSLLIEHGA 698
G TPL L+A+EG ++ +++
Sbjct: 221 GLTPLKLAAKEGKIEIFRHILQREF 245
Score = 142 bits (360), Expect = 2e-38
Identities = 43/252 (17%), Positives = 77/252 (30%), Gaps = 55/252 (21%)
Query: 75 EEVAKILVDNGATINVQSLNGFTPLYMAAQENHDG---VVRYLLSKGGNQTLATEHN--- 128
E + + + G T L A DG + LL +
Sbjct: 23 EYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQ 82
Query: 129 --------ITPLHVACKWGKVAMVELLISKGANIEAKTR-------------DGLTPLHC 167
+ LH+A + + V+LL+ GA++ + G PL
Sbjct: 83 CTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSL 142
Query: 168 AARSGHDNVIDILIEKG---AALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEIT 224
AA + +V+ L+E A+L + G LH +
Sbjct: 143 AACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPEN------------- 189
Query: 225 VDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVA 284
+AL + + G +++ L G TPL +A K+ + +
Sbjct: 190 ----SALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKE--------GKIEIF 237
Query: 285 KTLLDRKADPNA 296
+ +L R+ A
Sbjct: 238 RHILQREFSGAA 249
Score = 134 bits (338), Expect = 2e-35
Identities = 41/266 (15%), Positives = 77/266 (28%), Gaps = 54/266 (20%)
Query: 24 PALHIAAKKDDCKAAALLLEVSFSNTKLEVSLSNTK-------LEVSLSNTKFEATGQEE 76
L + + LLE N+K + T+ L ++ N + G
Sbjct: 4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQ---DGVNA 60
Query: 77 VAKILVDNG-----------ATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGN----- 120
L+ A + G + L++A ++ V+ L+ G +
Sbjct: 61 CIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRA 120
Query: 121 --------QTLATEHNITPLHVACKWGKVAMVELLISKG---ANIEAKTRDGLTPLHCAA 169
Q PL +A + +V L+ A++EA G T LH
Sbjct: 121 CGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALV 180
Query: 170 RSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLT 229
++ + L + L + LT
Sbjct: 181 MIADNS-----------------PENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLT 223
Query: 230 ALHVASHCGHVRVAKTLLDRKADPNA 255
L +A+ G + + + +L R+ A
Sbjct: 224 PLKLAAKEGKIEIFRHILQREFSGAA 249
Score = 107 bits (268), Expect = 5e-26
Identities = 39/209 (18%), Positives = 62/209 (29%), Gaps = 41/209 (19%)
Query: 2 QQGHDRVVAVLLENDTKGKVKLP---------------ALHIAAKKDDCKAAALLLE--- 43
Q G + + LL+ D P ALHIA +K + LL+E
Sbjct: 55 QDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGA 114
Query: 44 -VSFSNTKLEVSLSNTKLEVSLSNTKFEA--TGQEEVAKILVDNG---ATINVQSLNGFT 97
V A T Q +V L++N A++ G T
Sbjct: 115 DVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNT 174
Query: 98 PLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAK 157
L+ + + L + G + M L E
Sbjct: 175 VLHALVMIADN-----------------SPENSALVIHMYDGLLQMGARLCPTVQLEEIS 217
Query: 158 TRDGLTPLHCAARSGHDNVIDILIEKGAA 186
GLTPL AA+ G + ++++ +
Sbjct: 218 NHQGLTPLKLAAKEGKIEIFRHILQREFS 246
Score = 28.6 bits (64), Expect = 6.9
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Query: 1 MQQGHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCKAAALLLE 43
M G ++ A L + L L +AAK+ + +L+
Sbjct: 196 MYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQ 242
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 184 bits (469), Expect = 5e-54
Identities = 47/200 (23%), Positives = 77/200 (38%), Gaps = 24/200 (12%)
Query: 489 TKDGYTALHISAKEGQDEVASILTESGAS-ITATTKKGFTPLHLAAKYGRMKIAQMLLQK 547
+ + + +EG + ++ + + GF+PLH A + GR + +ML+ +
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61
Query: 548 DAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKN 607
GA I + TPLHLAA +G I Q LLQ A +++ ++
Sbjct: 62 -----------------GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEH 104
Query: 608 GVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKP 667
G PLH A + VA L+ GA K G P+ A + + +
Sbjct: 105 GNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNL 164
Query: 668 NAESKAGFTPLHLSAQEGHT 687
N P + +G T
Sbjct: 165 NR------IPYKDTFWKGTT 178
Score = 182 bits (464), Expect = 2e-53
Identities = 49/223 (21%), Positives = 75/223 (33%), Gaps = 48/223 (21%)
Query: 124 ATEHNITPLHVACKWGKVAMVELLISKGAN-IEAKTRDGLTPLHCAARSGHDNVIDILIE 182
+ + + C+ G V L + N + G +PLH A R G V+++LI
Sbjct: 1 GSPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIM 60
Query: 183 KGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRV 242
+GA + + T LH+A+ GH +
Sbjct: 61 RGARINVMNRGD---------------------------------DTPLHLAASHGHRDI 87
Query: 243 AKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGF 302
+ LL KAD NA +G PLH AC VA+ L+ A + G
Sbjct: 88 VQKLLQYKADINAVNEHGNVPLHYACFW--------GQDQVAEDLVANGALVSICNKYGE 139
Query: 303 TPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMG 345
P+ A R + E K G ++ P + G
Sbjct: 140 MPVDKAKAPLRELLRERAEKMGQNLNR------IPYKDTFWKG 176
Score = 181 bits (461), Expect = 5e-53
Identities = 49/214 (22%), Positives = 74/214 (34%), Gaps = 41/214 (19%)
Query: 259 NGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKA-DPNARALNGFTPLHIACKKNRYKVV 317
+ C++ + + LD D N +GF+PLH AC++ R VV
Sbjct: 4 EFMDDIFTQCREG--------NAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVV 55
Query: 318 ELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARA 377
E+L+ GA I TPLH+A+ G +I LLQ A + G PLH A
Sbjct: 56 EMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFW 115
Query: 378 NQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARAN 437
Q + L+ NGA V + GE P+ A
Sbjct: 116 GQDQVAEDLVANGALVSICNKY--------------------------GEMPVDKAKAPL 149
Query: 438 QTDIVRILLRNGASVDARAREDQTPLHVASRLGN 471
+ + + G +++ P G
Sbjct: 150 RELLRERAEKMGQNLNR------IPYKDTFWKGT 177
Score = 180 bits (460), Expect = 8e-53
Identities = 44/178 (24%), Positives = 71/178 (39%), Gaps = 7/178 (3%)
Query: 94 NGFTPLYMAAQENHDGVVRYLLSKGGNQT-LATEHNITPLHVACKWGKVAMVELLISKGA 152
++ +E + VR L N +H +PLH AC+ G+ A+VE+LI +GA
Sbjct: 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA 63
Query: 153 NIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRV 212
I R TPLH AA GH +++ L++ A + + ++G PLH A +
Sbjct: 64 RINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAED 123
Query: 213 LIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKK 270
L+ +GA V + A + + + N P K
Sbjct: 124 LVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNR------IPYKDTFWK 175
Score = 177 bits (452), Expect = 9e-52
Identities = 38/196 (19%), Positives = 74/196 (37%), Gaps = 22/196 (11%)
Query: 522 TKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHL 581
+ + + + G ++ L + GF+PLH
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTE----------------NDLNQGDDHGFSPLHW 45
Query: 582 AAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNG 641
A + GR + +ML+ + A ++ + TPLH+A+ + H+++ LL A +AV ++G
Sbjct: 46 ACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHG 105
Query: 642 YTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVS 701
PLH A Q +A L+ A + +K G P+ + + + G ++
Sbjct: 106 NVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLN 165
Query: 702 HQAKNGLTPLHLCAQE 717
P +
Sbjct: 166 R------IPYKDTFWK 175
Score = 176 bits (450), Expect = 2e-51
Identities = 45/215 (20%), Positives = 75/215 (34%), Gaps = 40/215 (18%)
Query: 572 TKKGFTPLHLAAKYGRMKIAQMLLQKDA-PVDSQGKNGVTPLHVASHYDHQNVALLLLDR 630
+ + + + G ++ L ++ +G +PLH A V +L+ R
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61
Query: 631 GASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMS 690
GA + + + TPLH+AA DI LL+Y A NA ++ G PLH + G ++
Sbjct: 62 GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVA 121
Query: 691 SLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHF 750
L+ +GA VS K G P+ A
Sbjct: 122 EDLVANGALVSICNKY---------------------------------GEMPVDKAKAP 148
Query: 751 GQLNMVRYLVENGANVNATTNLGYTPLHQASQQGR 785
+ + + G N+N P +G
Sbjct: 149 LRELLRERAEKMGQNLNR------IPYKDTFWKGT 177
Score = 173 bits (440), Expect = 5e-50
Identities = 42/165 (25%), Positives = 68/165 (41%), Gaps = 1/165 (0%)
Query: 639 KNGYTPLHIAAKKNQMDIATTLLEYNA-KPNAESKAGFTPLHLSAQEGHTDMSSLLIEHG 697
+ ++ L+ N GF+PLH + +EG + + +LI G
Sbjct: 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRG 62
Query: 698 ATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVR 757
A ++ + TPLHL A ++ + A+I+ V + G PLH A +GQ +
Sbjct: 63 ARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAE 122
Query: 758 YLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNAT 802
LV NGA V+ G P+ +A R L+ + G N
Sbjct: 123 DLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRI 167
Score = 171 bits (437), Expect = 1e-49
Identities = 44/170 (25%), Positives = 67/170 (39%), Gaps = 7/170 (4%)
Query: 73 GQEEVAKILVDNGAT-INVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITP 131
G ++ +DN +N +GF+PL+ A +E VV L+ +G + + TP
Sbjct: 16 GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTP 75
Query: 132 LHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKT 191
LH+A G +V+ L+ A+I A G PLH A G D V + L+ GA +
Sbjct: 76 LHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICN 135
Query: 192 KNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVR 241
K G P+ A E G ++ G R
Sbjct: 136 KYGEMPVDKAKAPLRELLRERAEKMGQNLNR------IPYKDTFWKGTTR 179
Score = 171 bits (436), Expect = 2e-49
Identities = 39/196 (19%), Positives = 71/196 (36%), Gaps = 24/196 (12%)
Query: 426 GETPLHLAARANQTDIVRILLRNGAS-VDARAREDQTPLHVASRLGNGDIASLLLQHGAS 484
+ R VR+ L N + ++ +PLH A R G + +L+ GA
Sbjct: 5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR 64
Query: 485 VDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
++ + T LH++A G ++ L + A I A + G PLH A +G+ ++A+ L
Sbjct: 65 INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDL 124
Query: 545 LQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQ 604
+ GA ++ K G P+ A R + + + ++
Sbjct: 125 VAN-----------------GALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNR- 166
Query: 605 GKNGVTPLHVASHYDH 620
P
Sbjct: 167 -----IPYKDTFWKGT 177
Score = 169 bits (432), Expect = 5e-49
Identities = 49/224 (21%), Positives = 81/224 (36%), Gaps = 50/224 (22%)
Query: 367 GETPLHLAARANQTDIVRILLRNGAS-VDARAREDQTPLHVASRLRRFSSASQSALTRVR 425
+ R VR+ L N + ++
Sbjct: 5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDH-------------------------- 38
Query: 426 GETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASV 485
G +PLH A R ++ +V +L+ GA ++ R D TPLH+A+ G+ DI LLQ+ A +
Sbjct: 39 GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI 98
Query: 486 DAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLL 545
+A + G LH + GQD+VA L +GA ++ K G P+ A R + +
Sbjct: 99 NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAE 158
Query: 546 QKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMK 589
+ G ++ P G +
Sbjct: 159 KM-----------------GQNLNR------IPYKDTFWKGTTR 179
Score = 162 bits (412), Expect = 3e-46
Identities = 42/210 (20%), Positives = 71/210 (33%), Gaps = 33/210 (15%)
Query: 331 TESGLTPLHVASFMGCMNIAIFLLQAGAA-PDTATVRGETPLHLAARANQTDIVRILLRN 389
+ + + G L + G +PLH A R ++ +V +L+
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61
Query: 390 GASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNG 449
GA ++ R +TPLHLAA DIV+ LL+
Sbjct: 62 GARINVMNRG--------------------------DDTPLHLAASHGHRDIVQKLLQYK 95
Query: 450 ASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVAS 509
A ++A PLH A G +A L+ +GA V K G + + ++ +
Sbjct: 96 ADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRE 155
Query: 510 ILTESGASITATTKKGFTPLHLAAKYGRMK 539
+ G ++ P G +
Sbjct: 156 RAEKMGQNLNR------IPYKDTFWKGTTR 179
Score = 139 bits (354), Expect = 2e-38
Identities = 45/210 (21%), Positives = 73/210 (34%), Gaps = 57/210 (27%)
Query: 2 QQGHDRVVAVLLEN--------DTKGKVKLPALHIAAKKDDCKAAALLLEVSFSNTKLEV 53
++G+ V + L+N D G LH A ++
Sbjct: 14 REGNAVAVRLWLDNTENDLNQGDDHGFS---PLHWACRE--------------------- 49
Query: 54 SLSNTKLEVSLSNTKFEATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRY 113
G+ V ++L+ GA INV + TPL++AA H +V+
Sbjct: 50 -------------------GRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 90
Query: 114 LLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGH 173
LL + EH PLH AC WG+ + E L++ GA + + G P+ A
Sbjct: 91 LLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLR 150
Query: 174 DNVIDILIEKGAALYSKTKNGLAPLHMASQ 203
+ + + + G L P
Sbjct: 151 ELLRERAEKMGQNLNRI------PYKDTFW 174
Score = 102 bits (256), Expect = 4e-25
Identities = 28/176 (15%), Positives = 52/176 (29%), Gaps = 50/176 (28%)
Query: 2 QQGHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCKAAALLLEVSFSNTKLEVSLSN 57
++G VV +L+ + + LH+AA
Sbjct: 48 REGRSAVVEMLIMRGARINVMNRGDDTPLHLAASH------------------------- 82
Query: 58 TKLEVSLSNTKFEATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSK 117
G ++ + L+ A IN + +G PL+ A D V L++
Sbjct: 83 ---------------GHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVAN 127
Query: 118 GGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGH 173
G ++ ++ P+ A + + E G N+ P G
Sbjct: 128 GALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNR------IPYKDTFWKGT 177
Score = 34.7 bits (81), Expect = 0.064
Identities = 9/65 (13%), Positives = 19/65 (29%), Gaps = 14/65 (21%)
Query: 770 TNLGYTPLHQASQQGRVLIIDLLLGAGAQ-PNATTN-----LFCCAT--------ILVKN 815
+ + ++G + + L L N + L +L+
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61
Query: 816 GAEID 820
GA I+
Sbjct: 62 GARIN 66
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 185 bits (473), Expect = 8e-54
Identities = 33/225 (14%), Positives = 70/225 (31%), Gaps = 17/225 (7%)
Query: 94 NGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGAN 153
G L + N ++ G + L + G+ +V+ +I + +
Sbjct: 4 TGQVSLPPGKRTNLRKTGSERIAHGMRVK-FNPLPLALLLDSSLEGEFDLVQRIIYEVDD 62
Query: 154 IEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVL 213
+G+T LH A +GH ++ L++ G + + +G PLH A+ ++ + L
Sbjct: 63 PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFL 122
Query: 214 IYHGAGVDEITVD---YLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKK 270
+ GA V +T G+ + ++ L + L +
Sbjct: 123 VESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQ 182
Query: 271 NRYKSSHCNHVWVAKTLLDRKADPNA--RALNGFTPLHIACKKNR 313
N + + R A ++
Sbjct: 183 N-----------DDELPMKEGDCMTIIHREDEDEIEWWWARLNDK 216
Score = 177 bits (452), Expect = 5e-51
Identities = 32/169 (18%), Positives = 57/169 (33%), Gaps = 4/169 (2%)
Query: 639 KNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGA 698
G L + N + + + + + L S+ EG D+ +I
Sbjct: 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVD 61
Query: 699 TVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRY 758
S G+T LH + + G ++ G+TPLH A+ + + ++
Sbjct: 62 DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKF 121
Query: 759 LVENGANVNATTN---LGYTPLHQASQQGRVLIIDLLLGAGAQPNATTN 804
LVE+GA V A T + ++G L G +
Sbjct: 122 LVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNK 170
Score = 177 bits (450), Expect = 1e-50
Identities = 43/267 (16%), Positives = 77/267 (28%), Gaps = 41/267 (15%)
Query: 523 KKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLA 582
G L + K + G + L +
Sbjct: 3 ITGQVSLPPGKRTNLRKTGSERIAH-----------------GMRVKFN-PLPLALLLDS 44
Query: 583 AKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGY 642
+ G + Q ++ + G+T LH A H + L+ G + +A +G+
Sbjct: 45 SLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGW 104
Query: 643 TPLHIAAKKNQMDIATTLLEYNAKPNAESKAG---FTPLHLSAQEGHTDMSSLLIEHGAT 699
TPLH AA N + + L+E A A + + +EG+T S L
Sbjct: 105 TPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEK 164
Query: 700 VSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYL 759
+ K + L + N E+ T +H + + +
Sbjct: 165 MGIMNKGVIYALWDYEPQ-----------NDDELPMKEGDCMTIIHR----EDEDEIEWW 209
Query: 760 VENGANVNATTNLGYTPLHQASQQGRV 786
+ GY P + R+
Sbjct: 210 WARLND-----KEGYVPRNLLGLYPRI 231
Score = 175 bits (447), Expect = 3e-50
Identities = 52/307 (16%), Positives = 87/307 (28%), Gaps = 77/307 (25%)
Query: 360 PDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQS 419
P+ + G+ L R N + +G V PL
Sbjct: 1 PE---ITGQVSLPPGKRTNLRKTGSERIAHGMRVKF------NPL--------------- 36
Query: 420 ALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLL 479
L ++ + D+V+ ++ E T LH A G+ +I L+
Sbjct: 37 ------PLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLV 90
Query: 480 QHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKG---FTPLHLAAKYG 536
Q G +V+A DG+T LH +A +V L ESGA++ A T + G
Sbjct: 91 QFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEG 150
Query: 537 RMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQ 596
+ +Q L + K L ++ + +
Sbjct: 151 YTQCSQFLYGV-----------------QEKMGIMNKGVIYALWDYEPQNDDELP--MKE 191
Query: 597 KDAP-VDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAA-----K 650
D + + A D GY P ++ K
Sbjct: 192 GDCMTIIHREDEDEIEWWWARLNDK-------------------EGYVPRNLLGLYPRIK 232
Query: 651 KNQMDIA 657
Q +A
Sbjct: 233 PRQRSLA 239
Score = 175 bits (446), Expect = 4e-50
Identities = 35/218 (16%), Positives = 65/218 (29%), Gaps = 17/218 (7%)
Query: 130 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 189
L + I+ G ++ L L ++ G +++ +I +
Sbjct: 7 VSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSL 65
Query: 190 KTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDR 249
G+ LH A H + L+ G V+ D T LH A+ C +V+V K L++
Sbjct: 66 PNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVES 125
Query: 250 KADPNARALNG---FTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLH 306
A A + ++ + ++ L + L
Sbjct: 126 GAAVFAMTYSDMQTAADKCEEMEE--------GYTQCSQFLYGVQEKMGIMNKGVIYALW 177
Query: 307 IACKKNRYKVVELLLKYGASIAATTESGL--TPLHVAS 342
+N EL +K G + A
Sbjct: 178 DYEPQN---DDELPMKEGDCMTIIHREDEDEIEWWWAR 212
Score = 174 bits (444), Expect = 7e-50
Identities = 42/226 (18%), Positives = 70/226 (30%), Gaps = 19/226 (8%)
Query: 160 DGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAG 219
G L R+ I G + LA L +S + +IY
Sbjct: 4 TGQVSLPPGKRTNLRKTGSERIAHGMRV-KFNPLPLALLLDSSLEGEFDLVQRIIYEVDD 62
Query: 220 VDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCN 279
+ +TALH A GH + K L+ + NA +G+TPLH A + CN
Sbjct: 63 PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCA--------ASCN 114
Query: 280 HVWVAKTLLDRKADPNARALNG---FTPLHIACKKNRYKVVELLLKYGASIAATTESGLT 336
+V V K L++ A A + ++ + + L + + +
Sbjct: 115 NVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIY 174
Query: 337 PLHVASFMGCMNIAIFLLQAGAAPDTATVRG---ETPLHLAARANQ 379
L + + T R E A ++
Sbjct: 175 ALWDYEPQNDDELPM----KEGDCMTIIHREDEDEIEWWWARLNDK 216
Score = 174 bits (443), Expect = 9e-50
Identities = 38/205 (18%), Positives = 74/205 (36%), Gaps = 9/205 (4%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
+ + +G + L ++ E +V+ ++ + + +L + IT L
Sbjct: 16 NLRKTGSERIAHGMRVKFNP-LPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITAL 74
Query: 133 HVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTK 192
H A G +V+ L+ G N+ A DG TPLHCAA + V L+E GAA+++ T
Sbjct: 75 HNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTY 134
Query: 193 NGL---APLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDR 249
+ + A + + ++ L + + + AL + +
Sbjct: 135 SDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQND---DELPMKE 191
Query: 250 KADPNA--RALNGFTPLHIACKKNR 272
R A ++
Sbjct: 192 GDCMTIIHREDEDEIEWWWARLNDK 216
Score = 173 bits (440), Expect = 3e-49
Identities = 42/283 (14%), Positives = 78/283 (27%), Gaps = 56/283 (19%)
Query: 259 NGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVE 318
G L + N + L + + + +V+
Sbjct: 4 TGQVSLPPGKRTN--------LRKTGSERIAHGMRVKFNP-LPLALLLDSSLEGEFDLVQ 54
Query: 319 LLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARAN 378
++ + + G+T LH A G I FL+Q G + A G TPLH AA N
Sbjct: 55 RIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCN 114
Query: 379 QTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQ 438
+ + L+ +GA+V A D +
Sbjct: 115 NVQVCKFLVESGAAVFAMTYSDM-----------------------QTAADKCEEMEEGY 151
Query: 439 TDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGY--TAL 496
T + L + + L + ++ ++ G + ++
Sbjct: 152 TQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELP---MKEGDCMTIIHREDEDEIEW 208
Query: 497 HISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMK 539
+ K+G+ P +L Y R+K
Sbjct: 209 WWARLND-------------------KEGYVPRNLLGLYPRIK 232
Score = 170 bits (434), Expect = 2e-48
Identities = 49/248 (19%), Positives = 78/248 (31%), Gaps = 29/248 (11%)
Query: 192 KNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKA 251
G L + + I HG V L L +S G + + ++
Sbjct: 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVD 61
Query: 252 DPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKK 311
DP+ G T LH A H + K L+ + NA +G+TPLH A
Sbjct: 62 DPSLPNDEGITALHNAVCA--------GHTEIVKFLVQFGVNVNAADSDGWTPLHCAASC 113
Query: 312 NRYKVVELLLKYGASIAATTESGL---TPLHVASFMGCMNIAIFLLQAGAAPDTATVRGE 368
N +V + L++ GA++ A T S + G + FL
Sbjct: 114 NNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVI 173
Query: 369 TPLHLAARANQTDIVRILLRNGASVDARARED--QTPLHVASRLRRFSSASQSALTRVRG 426
L N + + ++ G + RED + A + G
Sbjct: 174 YALWDYEPQNDDE---LPMKEGDCMTIIHREDEDEIEWWWARLNDK------------EG 218
Query: 427 ETPLHLAA 434
P +L
Sbjct: 219 YVPRNLLG 226
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 174 bits (443), Expect = 3e-50
Identities = 52/242 (21%), Positives = 95/242 (39%), Gaps = 50/242 (20%)
Query: 85 GATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMV 144
G+ ++ NG + +++ + + +L + + +N TPL VAC G +
Sbjct: 1 GSHMDK---NGEIVEKIKDEKSINQNLDFLRNYRDS------YNRTPLMVACMLGMENAI 51
Query: 145 ELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQG 204
+ L+ +E K +G T L A ++ + + L+ KG+ + +K +G
Sbjct: 52 DKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSG---------- 101
Query: 205 DHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPL 264
T L + G+ ++ LL+ A+ N R L G TPL
Sbjct: 102 -----------------------KTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPL 138
Query: 265 HIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYG 324
+A S + K LL+ AD +AR L G T A R +V+++ +
Sbjct: 139 IVA--------SKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVR 190
Query: 325 AS 326
+
Sbjct: 191 RA 192
Score = 171 bits (436), Expect = 3e-49
Identities = 48/217 (22%), Positives = 84/217 (38%), Gaps = 26/217 (11%)
Query: 482 GASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIA 541
G+ +D K+G I ++ ++ L TPL +A G
Sbjct: 1 GSHMD---KNGEIVEKIKDEKSINQNLDFLRN------YRDSYNRTPLMVACMLGMENAI 51
Query: 542 QMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPV 601
L++ + +G T L A K R+ IA+ LL K + V
Sbjct: 52 DKLVEN-----------------FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV 94
Query: 602 DSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLL 661
+++ +G TPL + + + ++ LL+ GA+ + G TPL +A+K + +I LL
Sbjct: 95 NTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLL 154
Query: 662 EYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGA 698
E A +A G T + G ++ + E
Sbjct: 155 ELGADISARDLTGLTAEASARIFGRQEVIKIFTEVRR 191
Score = 171 bits (435), Expect = 3e-49
Identities = 48/209 (22%), Positives = 88/209 (42%), Gaps = 17/209 (8%)
Query: 151 GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAAT 210
G++++ ++G + +D L + PL +A E A
Sbjct: 1 GSHMD---KNGEIVEKIKDEKSINQNLDFLRNY------RDSYNRTPLMVACMLGMENAI 51
Query: 211 RVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKK 270
L+ + +++ ++ TAL A + +A+ LL + ++ N + +G TPL +
Sbjct: 52 DKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWS--- 108
Query: 271 NRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAAT 330
+ ++ LL+ A+ N R L G TPL +A K R ++V+ LL+ GA I+A
Sbjct: 109 -----IIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISAR 163
Query: 331 TESGLTPLHVASFMGCMNIAIFLLQAGAA 359
+GLT A G + + A
Sbjct: 164 DLTGLTAEASARIFGRQEVIKIFTEVRRA 192
Score = 167 bits (426), Expect = 6e-48
Identities = 56/229 (24%), Positives = 87/229 (37%), Gaps = 42/229 (18%)
Query: 565 GASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVA 624
G+ + K G + + + L + + TPL VA +N
Sbjct: 1 GSHMD---KNGEIVEKIKDEKSINQNLDFL------RNYRDSYNRTPLMVACMLGMENAI 51
Query: 625 LLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQE 684
L++ G T L A K N++ IA LL + N + +G TPL S
Sbjct: 52 DKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIF 111
Query: 685 GHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPL 744
G+++MS L+EHGA V +N G TPL
Sbjct: 112 GYSEMSYFLLEHGANV--NDRN-------------------------------LEGETPL 138
Query: 745 HIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLL 793
+AS +G+ +V+ L+E GA+++A G T A GR +I +
Sbjct: 139 IVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFT 187
Score = 157 bits (400), Expect = 2e-44
Identities = 41/209 (19%), Positives = 76/209 (36%), Gaps = 26/209 (12%)
Query: 515 GASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKK 574
G+ + K G + + + L
Sbjct: 1 GSHMD---KNGEIVEKIKDEKSINQNLDFL-----------------------RNYRDSY 34
Query: 575 GFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASP 634
TPL +A G L++ ++ + G T L A + +A LL +G++
Sbjct: 35 NRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV 94
Query: 635 HAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLI 694
+ +G TPL + +++ LLE+ A N + G TPL ++++ G +++ L+
Sbjct: 95 NTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLL 154
Query: 695 EHGATVSHQAKNGLTPLHLCAQEDKVNVA 723
E GA +S + GLT + V
Sbjct: 155 ELGADISARDLTGLTAEASARIFGRQEVI 183
Score = 156 bits (398), Expect = 4e-44
Identities = 51/229 (22%), Positives = 81/229 (35%), Gaps = 49/229 (21%)
Query: 367 GETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRG 426
GE + + + L N
Sbjct: 8 GEIVEKIKDEKSINQNLDFLR-NYRDSY-------------------------------N 35
Query: 427 ETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVD 486
TPL +A + + L+ N ++ + E T L A + IA LL G++V+
Sbjct: 36 RTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVN 95
Query: 487 APTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQ 546
G T L S G E++ L E GA++ +G TPL +A+KYGR +I + LL+
Sbjct: 96 TKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLE 155
Query: 547 KDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLL 595
GA I+A G T A +GR ++ ++
Sbjct: 156 L-----------------GADISARDLTGLTAEASARIFGRQEVIKIFT 187
Score = 154 bits (393), Expect = 2e-43
Identities = 54/212 (25%), Positives = 85/212 (40%), Gaps = 32/212 (15%)
Query: 300 NGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAA 359
NG I +K+ + ++ L TPL VA +G N L++
Sbjct: 7 NGEIVEKIKDEKSINQNLDFL------RNYRDSYNRTPLMVACMLGMENAIDKLVENFDK 60
Query: 360 PDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQS 419
+ + G T L A + N+ I LL G++V+ +
Sbjct: 61 LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFS-------------------- 100
Query: 420 ALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLL 479
G+TPL + +++ LL +GA+V+ R E +TPL VAS+ G +I LL
Sbjct: 101 ------GKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLL 154
Query: 480 QHGASVDAPTKDGYTALHISAKEGQDEVASIL 511
+ GA + A G TA + G+ EV I
Sbjct: 155 ELGADISARDLTGLTAEASARIFGRQEVIKIF 186
Score = 153 bits (390), Expect = 4e-43
Identities = 39/147 (26%), Positives = 62/147 (42%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
G E LV+N + + + G T L A + N G+ LLSKG N TPL
Sbjct: 46 GMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPL 105
Query: 133 HVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTK 192
+ +G M L+ GAN+ + +G TPL A++ G ++ L+E GA + ++
Sbjct: 106 MWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDL 165
Query: 193 NGLAPLHMASQGDHEAATRVLIYHGAG 219
GL A + ++
Sbjct: 166 TGLTAEASARIFGRQEVIKIFTEVRRA 192
Score = 150 bits (382), Expect = 5e-42
Identities = 52/226 (23%), Positives = 84/226 (37%), Gaps = 40/226 (17%)
Query: 259 NGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVE 318
NG I +K+ N L N R TPL +AC ++
Sbjct: 7 NGEIVEKIKDEKS------INQN--LDFLR------NYRDSYNRTPLMVACMLGMENAID 52
Query: 319 LLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARAN 378
L++ + G T L A + IA LL G+ +T G+TPL +
Sbjct: 53 KLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFG 112
Query: 379 QTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQ 438
+++ LL +GA+V+ R E GETPL +A++ +
Sbjct: 113 YSEMSYFLLEHGANVNDRNLE--------------------------GETPLIVASKYGR 146
Query: 439 TDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGAS 484
++IV+ LL GA + AR T A G ++ + + +
Sbjct: 147 SEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVRRA 192
Score = 144 bits (365), Expect = 1e-39
Identities = 46/166 (27%), Positives = 72/166 (43%), Gaps = 6/166 (3%)
Query: 639 KNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGA 698
KNG I +K+ L N TPL ++ G + L+E+
Sbjct: 6 KNGEIVEKIKDEKSINQNLDFLR------NYRDSYNRTPLMVACMLGMENAIDKLVENFD 59
Query: 699 TVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRY 758
+ + G T L + +++ +A + G+ ++ +G TPL + FG M +
Sbjct: 60 KLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYF 119
Query: 759 LVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTN 804
L+E+GANVN G TPL AS+ GR I+ LL GA +A
Sbjct: 120 LLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDL 165
Score = 90.9 bits (227), Expect = 4e-21
Identities = 43/197 (21%), Positives = 65/197 (32%), Gaps = 60/197 (30%)
Query: 2 QQGHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCKAAALLLEV--------SFSNT 49
G + + L+EN + K AL A K + A LL T
Sbjct: 44 MLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKT 103
Query: 50 KLEVSLSNTKLEVSLSNTKFEATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDG 109
L S+ G E++ L+++GA +N ++L G TPL +A++
Sbjct: 104 PLMWSIIF---------------GYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGR-- 146
Query: 110 VVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAA 169
+V+ L+ GA+I A+ GLT A
Sbjct: 147 -------------------------------SEIVKKLLELGADISARDLTGLTAEASAR 175
Query: 170 RSGHDNVIDILIEKGAA 186
G VI I E A
Sbjct: 176 IFGRQEVIKIFTEVRRA 192
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 172 bits (438), Expect = 4e-50
Identities = 47/151 (31%), Positives = 74/151 (49%), Gaps = 3/151 (1%)
Query: 574 KGFTPLHLAAKYGRMKIAQMLLQKD-APVDSQGKNGVTPLHVASHYDHQNVALLLLDRGA 632
+ L AA G ++ + LL ++ D+ + G T L V + +AL LL +GA
Sbjct: 1 RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGA 59
Query: 633 SPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSL 692
SP+ +G +P+H AA+ +D L+E+ A N G P+HL+ QEGHT + S
Sbjct: 60 SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSF 119
Query: 693 LIEHGATVSHQAKNGLTPLHLCAQEDKVNVA 723
L + + + GLTPL L Q ++
Sbjct: 120 LAAE-SDLHRRDARGLTPLELALQRGAQDLV 149
Score = 163 bits (416), Expect = 5e-47
Identities = 46/172 (26%), Positives = 67/172 (38%), Gaps = 20/172 (11%)
Query: 425 RGETPLHLAARANQTDIVRILL-RNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGA 483
R L AA VR LL R DA R +T L V G+ IA LL+ GA
Sbjct: 1 RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGA 59
Query: 484 SVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQM 543
S + G + +H +A+ G + +L E GA + G P+HLA + G +
Sbjct: 60 SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSF 119
Query: 544 LLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLL 595
L + + + +G TPL LA + G + +L
Sbjct: 120 LA------------------AESDLHRRDARGLTPLELALQRGAQDLVDILQ 153
Score = 158 bits (402), Expect = 4e-45
Identities = 39/173 (22%), Positives = 71/173 (41%), Gaps = 18/173 (10%)
Query: 524 KGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAA 583
+ L AA G ++ + LL ++ A + G T L +
Sbjct: 1 RAGDRLSGAAARGDVQEVRRLLHRE----------------LVHPDALNRFGKTALQVMM 44
Query: 584 KYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYT 643
+G IA LL++ A + Q +G +P+H A+ + +L++ GA + G
Sbjct: 45 -FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGAL 103
Query: 644 PLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEH 696
P+H+A ++ + + L + + G TPL L+ Q G D+ +L H
Sbjct: 104 PIHLAVQEGHTAVVSFLAA-ESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155
Score = 156 bits (398), Expect = 1e-44
Identities = 49/181 (27%), Positives = 71/181 (39%), Gaps = 29/181 (16%)
Query: 366 RGETPLHLAARANQTDIVRILL-RNGASVDARAREDQTPLHVASRLRRFSSASQSALTRV 424
R L AA VR LL R DA R +T L V
Sbjct: 1 RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF--------------- 45
Query: 425 RGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGAS 484
T I LL+ GAS + + +P+H A+R G D +L++HGA
Sbjct: 46 ------------GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGAD 93
Query: 485 VDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
V+ P G +H++ +EG V S L + + + +G TPL LA + G + +L
Sbjct: 94 VNVPDGTGALPIHLAVQEGHTAVVSFL-AAESDLHRRDARGLTPLELALQRGAQDLVDIL 152
Query: 545 L 545
Sbjct: 153 Q 153
Score = 151 bits (385), Expect = 7e-43
Identities = 43/160 (26%), Positives = 70/160 (43%), Gaps = 11/160 (6%)
Query: 229 TALHVASHCGHVRVAKTLLDRK-ADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTL 287
L A+ G V+ + LL R+ P+A G T L + +A L
Sbjct: 4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF---------GSTAIALEL 54
Query: 288 LDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCM 347
L + A PN + +G +P+H A + +++L+++GA + +G P+H+A G
Sbjct: 55 LKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHT 114
Query: 348 NIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILL 387
+ FL + RG TPL LA + D+V IL
Sbjct: 115 AVVSFLAA-ESDLHRRDARGLTPLELALQRGAQDLVDILQ 153
Score = 151 bits (384), Expect = 1e-42
Identities = 40/155 (25%), Positives = 62/155 (40%), Gaps = 3/155 (1%)
Query: 95 GFTPLYMAAQENHDGVVRYLLSKGG-NQTLATEHNITPLHVACKWGKVAMVELLISKGAN 153
L AA VR LL + + T L V +G A+ L+ +GA+
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGAS 60
Query: 154 IEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVL 213
+ G +P+H AAR+G + + +L+E GA + G P+H+A Q H A L
Sbjct: 61 PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 120
Query: 214 IYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLD 248
+ + LT L +A G + L
Sbjct: 121 A-AESDLHRRDARGLTPLELALQRGAQDLVDILQG 154
Score = 149 bits (380), Expect = 4e-42
Identities = 40/161 (24%), Positives = 64/161 (39%), Gaps = 11/161 (6%)
Query: 130 TPLHVACKWGKVAMV-ELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALY 188
L A G V V LL + + +A R G T L G + L+++GA+
Sbjct: 4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPN 62
Query: 189 SKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLD 248
+ +G +P+H A++ +VL+ HGA V+ +H+A GH V L
Sbjct: 63 VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS-FLA 121
Query: 249 RKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLD 289
++D + R G TPL +A + L
Sbjct: 122 AESDLHRRDARGLTPLELA--------LQRGAQDLVDILQG 154
Score = 149 bits (378), Expect = 8e-42
Identities = 33/142 (23%), Positives = 62/142 (43%), Gaps = 2/142 (1%)
Query: 75 EEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHV 134
+EV ++L + + G T L + + LL +G + + +P+H
Sbjct: 16 QEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHD 74
Query: 135 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNG 194
A + G + +++L+ GA++ G P+H A + GH V+ L + L+ + G
Sbjct: 75 AARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARG 133
Query: 195 LAPLHMASQGDHEAATRVLIYH 216
L PL +A Q + +L H
Sbjct: 134 LTPLELALQRGAQDLVDILQGH 155
Score = 147 bits (374), Expect = 2e-41
Identities = 42/172 (24%), Positives = 65/172 (37%), Gaps = 20/172 (11%)
Query: 492 GYTALHISAKEGQ-DEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAP 550
L +A G EV +L A + G T L + +G IA LL++
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQ--- 57
Query: 551 VDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVT 610
GAS G +P+H AA+ G + ++L++ A V+ G
Sbjct: 58 --------------GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGAL 103
Query: 611 PLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLE 662
P+H+A H V L + H G TPL +A ++ D+ L
Sbjct: 104 PIHLAVQEGHTAVVSFLAA-ESDLHRRDARGLTPLELALQRGAQDLVDILQG 154
Score = 146 bits (372), Expect = 5e-41
Identities = 47/182 (25%), Positives = 71/182 (39%), Gaps = 29/182 (15%)
Query: 301 GFTPLHIACKKNRYKVV-ELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAA 359
L A + + V LL + A G T L V F G IA+ LL+ GA+
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGAS 60
Query: 360 PDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQS 419
P+ G +P+H AAR D +++L+ +GA V+
Sbjct: 61 PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGT-------------------- 100
Query: 420 ALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLL 479
G P+HLA + T +V L + + R TPL +A + G D+ +L
Sbjct: 101 ------GALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQ 153
Query: 480 QH 481
H
Sbjct: 154 GH 155
Score = 145 bits (369), Expect = 1e-40
Identities = 42/163 (25%), Positives = 67/163 (41%), Gaps = 10/163 (6%)
Query: 192 KNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKA 251
+ G A++GD + R+L D + TAL V G +A LL + A
Sbjct: 1 RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGA 59
Query: 252 DPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKK 311
PN + +G +P+H A + + K L++ AD N G P+H+A ++
Sbjct: 60 SPNVQDTSGTSPVHDAART--------GFLDTLKVLVEHGADVNVPDGTGALPIHLAVQE 111
Query: 312 NRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLL 354
VV L + + GLTPL +A G ++ L
Sbjct: 112 GHTAVVSFLAA-ESDLHRRDARGLTPLELALQRGAQDLVDILQ 153
Score = 130 bits (329), Expect = 3e-35
Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 8/158 (5%)
Query: 25 ALHIAAKKDDCKAAALLLEVSFSNTKLEVSLSNTKLEVSLSNTKFEATGQEEVAKILVDN 84
L AA + D + LL + T L+V G +A L+
Sbjct: 5 RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-------MFGSTAIALELLKQ 57
Query: 85 GATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMV 144
GA+ NVQ +G +P++ AA+ ++ L+ G + + P+H+A + G A+V
Sbjct: 58 GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVV 117
Query: 145 ELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIE 182
L + +++ + GLTPL A + G +++DIL
Sbjct: 118 SFLAA-ESDLHRRDARGLTPLELALQRGAQDLVDILQG 154
Score = 124 bits (314), Expect = 3e-33
Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 3/132 (2%)
Query: 674 GFTPLHLSAQEGHTD-MSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAE 732
L +A G + LL + G T L + +A + GA
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGAS 60
Query: 733 IDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLL 792
+ +G +P+H A+ G L+ ++ LVE+GA+VN G P+H A Q+G ++ L
Sbjct: 61 PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 120
Query: 793 LGAGAQPNATTN 804
A + +
Sbjct: 121 A-AESDLHRRDA 131
Score = 70.1 bits (173), Expect = 3e-14
Identities = 23/95 (24%), Positives = 35/95 (36%), Gaps = 15/95 (15%)
Query: 740 GFTPLHIASHFGQLNMVRYLVE-NGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQ 798
L A+ G + VR L+ + +A G T L G I LL GA
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGAS 60
Query: 799 PNATTN-----LFCCA--------TILVKNGAEID 820
PN + A +LV++GA+++
Sbjct: 61 PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVN 95
Score = 50.9 bits (123), Expect = 1e-07
Identities = 17/119 (14%), Positives = 32/119 (26%), Gaps = 45/119 (37%)
Query: 2 QQGHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCKAAALLLEVSFSNTKLEVSLSN 57
+ G + VL+E+ + +H+A ++
Sbjct: 77 RTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQE------------------------- 111
Query: 58 TKLEVSLSNTKFEATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLS 116
G V L + ++ + G TPL +A Q +V L
Sbjct: 112 ---------------GHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQG 154
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 170 bits (434), Expect = 3e-49
Identities = 59/173 (34%), Positives = 92/173 (53%), Gaps = 17/173 (9%)
Query: 426 GETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASV 485
L AARA + D VRIL+ NGA V+A TPLH+A+ G+ +I +LL++GA V
Sbjct: 14 LGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV 73
Query: 486 DAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLL 545
+A G T L ++A G E+ +L ++GA + A +G TPLHLAA +G ++I ++LL
Sbjct: 74 NAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLL 133
Query: 546 QKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKD 598
+ GA + A K G T ++ G +A++L + +
Sbjct: 134 KN-----------------GADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 165 bits (421), Expect = 2e-47
Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 9/175 (5%)
Query: 150 KGANIEAKT-RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEA 208
+G++ D L AAR+G D+ + IL+ GA + ++ +G PLH+A+ H
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLE 61
Query: 209 ATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIAC 268
VL+ +GA V+ + +T L +A+ GH+ + + LL AD NA + G TPLH+A
Sbjct: 62 IVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLA- 120
Query: 269 KKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKY 323
+ H+ + + LL AD NA+ G T I+ + E+L K
Sbjct: 121 -------AMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 165 bits (420), Expect = 2e-47
Identities = 60/190 (31%), Positives = 92/190 (48%), Gaps = 24/190 (12%)
Query: 475 ASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAK 534
+ HG+ D L +A+ G+D+ IL +GA + A G+TPLHLAA
Sbjct: 4 SHHHHHHGS-------DLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAF 56
Query: 535 YGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 594
G ++I ++LL+ GA + A G TPL LAA +G ++I ++L
Sbjct: 57 NGHLEIVEVLLKN-----------------GADVNAVDHAGMTPLRLAALFGHLEIVEVL 99
Query: 595 LQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQM 654
L+ A V++ G TPLH+A+ + H + +LL GA +A K G T I+
Sbjct: 100 LKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNE 159
Query: 655 DIATTLLEYN 664
D+A L + N
Sbjct: 160 DLAEILQKLN 169
Score = 164 bits (419), Expect = 3e-47
Identities = 48/170 (28%), Positives = 82/170 (48%), Gaps = 7/170 (4%)
Query: 78 AKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACK 137
+ +G+ + L AA+ D VR L++ G + TPLH+A
Sbjct: 4 SHHHHHHGS-------DLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAF 56
Query: 138 WGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAP 197
G + +VE+L+ GA++ A G+TPL AA GH ++++L++ GA + + G P
Sbjct: 57 NGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTP 116
Query: 198 LHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLL 247
LH+A+ H VL+ +GA V+ TA ++ G+ +A+ L
Sbjct: 117 LHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 164 bits (418), Expect = 4e-47
Identities = 47/159 (29%), Positives = 82/159 (51%), Gaps = 8/159 (5%)
Query: 130 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 189
L A + G+ V +L++ GA++ A+ G TPLH AA +GH ++++L++ GA + +
Sbjct: 16 KKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNA 75
Query: 190 KTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDR 249
G+ PL +A+ H VL+ +GA V+ ++ T LH+A+ GH+ + + LL
Sbjct: 76 VDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN 135
Query: 250 KADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLL 288
AD NA+ G T I+ + +A+ L
Sbjct: 136 GADVNAQDKFGKTAFDIS--------IDNGNEDLAEILQ 166
Score = 161 bits (411), Expect = 3e-46
Identities = 55/165 (33%), Positives = 88/165 (53%), Gaps = 1/165 (0%)
Query: 630 RGASP-HAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTD 688
RG+ H + L AA+ + D L+ A NAE +G+TPLHL+A GH +
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLE 61
Query: 689 MSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIAS 748
+ +L+++GA V+ G+TPL L A + + + + NGA+++ G TPLH+A+
Sbjct: 62 IVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAA 121
Query: 749 HFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLL 793
FG L +V L++NGA+VNA G T + G + ++L
Sbjct: 122 MFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 160 bits (409), Expect = 7e-46
Identities = 54/176 (30%), Positives = 79/176 (44%), Gaps = 15/176 (8%)
Query: 212 VLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKN 271
+HG+ D L A+ G + L+ AD NA +G+TPLH+A
Sbjct: 6 HHHHHGS-------DLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNG 58
Query: 272 RYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATT 331
H+ + + LL AD NA G TPL +A ++VE+LLK GA + A
Sbjct: 59 --------HLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNAND 110
Query: 332 ESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILL 387
G TPLH+A+ G + I LL+ GA + G+T ++ D+ IL
Sbjct: 111 MEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 160 bits (409), Expect = 7e-46
Identities = 54/172 (31%), Positives = 86/172 (50%), Gaps = 17/172 (9%)
Query: 525 GFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAK 584
L AA+ GR ++L+ GA + A G+TPLHLAA
Sbjct: 14 LGKKLLEAARAGRDDEVRILMAN-----------------GADVNAEDASGWTPLHLAAF 56
Query: 585 YGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTP 644
G ++I ++LL+ A V++ G+TPL +A+ + H + +LL GA +A G+TP
Sbjct: 57 NGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTP 116
Query: 645 LHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEH 696
LH+AA ++I LL+ A NA+ K G T +S G+ D++ +L +
Sbjct: 117 LHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 159 bits (404), Expect = 3e-45
Identities = 45/144 (31%), Positives = 81/144 (56%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
G+++ +IL+ NGA +N + +G+TPL++AA H +V LL G + +TPL
Sbjct: 25 GRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPL 84
Query: 133 HVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTK 192
+A +G + +VE+L+ GA++ A +G TPLH AA GH ++++L++ GA + ++ K
Sbjct: 85 RLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDK 144
Query: 193 NGLAPLHMASQGDHEAATRVLIYH 216
G ++ +E +L
Sbjct: 145 FGKTAFDISIDNGNEDLAEILQKL 168
Score = 155 bits (396), Expect = 4e-44
Identities = 51/178 (28%), Positives = 82/178 (46%), Gaps = 15/178 (8%)
Query: 178 DILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHC 237
G+ + L A++ + R+L+ +GA V+ T LH+A+
Sbjct: 5 HHHHHHGS-------DLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFN 57
Query: 238 GHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNAR 297
GH+ + + LL AD NA G TPL +A + H+ + + LL AD NA
Sbjct: 58 GHLEIVEVLLKNGADVNAVDHAGMTPLRLA--------ALFGHLEIVEVLLKNGADVNAN 109
Query: 298 ALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQ 355
+ G TPLH+A ++VE+LLK GA + A + G T ++ G ++A L +
Sbjct: 110 DMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 155 bits (396), Expect = 4e-44
Identities = 51/149 (34%), Positives = 79/149 (53%)
Query: 575 GFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASP 634
L AA+ GR ++L+ A V+++ +G TPLH+A+ H + +LL GA
Sbjct: 14 LGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV 73
Query: 635 HAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLI 694
+AV G TPL +AA ++I LL+ A NA G TPLHL+A GH ++ +L+
Sbjct: 74 NAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLL 133
Query: 695 EHGATVSHQAKNGLTPLHLCAQEDKVNVA 723
++GA V+ Q K G T + ++A
Sbjct: 134 KNGADVNAQDKFGKTAFDISIDNGNEDLA 162
Score = 155 bits (394), Expect = 7e-44
Identities = 49/159 (30%), Positives = 80/159 (50%)
Query: 603 SQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLE 662
G + L A+ + +L+ GA +A +G+TPLH+AA ++I LL+
Sbjct: 9 HHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLK 68
Query: 663 YNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNV 722
A NA AG TPL L+A GH ++ +L+++GA V+ G TPLHL A + +
Sbjct: 69 NGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEI 128
Query: 723 ATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVE 761
+ + NGA+++ K G T I+ G ++ L +
Sbjct: 129 VEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 147 bits (375), Expect = 3e-41
Identities = 50/151 (33%), Positives = 78/151 (51%), Gaps = 8/151 (5%)
Query: 259 NGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVE 318
+ L A + + L+ AD NA +G+TPLH+A ++VE
Sbjct: 13 DLGKKLLEA--------ARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVE 64
Query: 319 LLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARAN 378
+LLK GA + A +G+TPL +A+ G + I LL+ GA + + G TPLHLAA
Sbjct: 65 VLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFG 124
Query: 379 QTDIVRILLRNGASVDARAREDQTPLHVASR 409
+IV +LL+NGA V+A+ + +T ++
Sbjct: 125 HLEIVEVLLKNGADVNAQDKFGKTAFDISID 155
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 168 bits (428), Expect = 1e-48
Identities = 56/176 (31%), Positives = 82/176 (46%), Gaps = 17/176 (9%)
Query: 523 KKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLA 582
+ L AAK G ++ + L + + + TPLH A
Sbjct: 6 SEADRQLLEAAKAGDVETVKKLC-------TVQ---------SVNCRDIEGRQSTPLHFA 49
Query: 583 AKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGY 642
A Y R+ + + LLQ A V ++ K G+ PLH A Y H VA LL+ GA + +
Sbjct: 50 AGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF 109
Query: 643 TPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGA 698
TPLH AA K + +I LL++ A P +++ G TPL L ++G TD+ LL A
Sbjct: 110 TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL-VKDGDTDIQDLLRGDAA 164
Score = 159 bits (404), Expect = 3e-45
Identities = 49/176 (27%), Positives = 67/176 (38%), Gaps = 13/176 (7%)
Query: 151 GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAA-LYSKTKNGLAPLHMASQGDHEAA 209
GA + + L AA++G + L + PLH A+ + +
Sbjct: 1 GAMGNS---EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSV 57
Query: 210 TRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACK 269
L+ HGA V L LH A GH VA+ L+ A N L FTPLH A
Sbjct: 58 VEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAA 117
Query: 270 KNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGA 325
K + K LL ADP + +G TPL + K + +LL A
Sbjct: 118 K--------GKYEICKLLLQHGADPTKKNRDGNTPLDLV-KDGDTDIQDLLRGDAA 164
Score = 157 bits (400), Expect = 1e-44
Identities = 48/168 (28%), Positives = 71/168 (42%), Gaps = 5/168 (2%)
Query: 85 GATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGG-NQTLATEHNITPLHVACKWGKVAM 143
GA N L AA+ V+ L + N TPLH A + +V++
Sbjct: 1 GAMGNS---EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSV 57
Query: 144 VELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQ 203
VE L+ GA++ AK + GL PLH A GH V ++L++ GA + PLH A+
Sbjct: 58 VEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAA 117
Query: 204 GDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKA 251
++L+ HGA + D T L + G + L A
Sbjct: 118 KGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA 164
Score = 152 bits (388), Expect = 4e-43
Identities = 54/175 (30%), Positives = 71/175 (40%), Gaps = 19/175 (10%)
Query: 426 GETPLHLAARANQTDIVRILL-RNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGAS 484
+ L AA+A + V+ L + TPLH A+ + LLQHGA
Sbjct: 8 ADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD 67
Query: 485 VDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
V A K G LH + G EVA +L + GA + FTPLH AA G+ +I ++L
Sbjct: 68 VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLL 127
Query: 545 LQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDA 599
LQ GA T + G TPL L G I +L A
Sbjct: 128 LQH-----------------GADPTKKNRDGNTPLDLVK-DGDTDIQDLLRGDAA 164
Score = 152 bits (388), Expect = 5e-43
Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 2/160 (1%)
Query: 573 KKGFTPLHLAAKYGRMKIAQMLL-QKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRG 631
+ L AAK G ++ + L + TPLH A+ Y+ +V LL G
Sbjct: 6 SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG 65
Query: 632 ASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSS 691
A HA K G PLH A ++A L+++ A N FTPLH +A +G ++
Sbjct: 66 ADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICK 125
Query: 692 LLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGA 731
LL++HGA + + ++G TPL L ++ ++ + + A
Sbjct: 126 LLLQHGADPTKKNRDGNTPLDL-VKDGDTDIQDLLRGDAA 164
Score = 151 bits (385), Expect = 1e-42
Identities = 57/193 (29%), Positives = 86/193 (44%), Gaps = 29/193 (15%)
Query: 357 GAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSA 416
GA ++ + L AA+A + V+ L + V+ R E
Sbjct: 1 GAMGNS---EADRQLLEAAKAGDVETVKKLCTVQS-VNCRDIEG---------------- 40
Query: 417 SQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIAS 476
R TPLH AA N+ +V LL++GA V A+ + PLH A G+ ++A
Sbjct: 41 --------RQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAE 92
Query: 477 LLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYG 536
LL++HGA V+ +T LH +A +G+ E+ +L + GA T + G TPL L G
Sbjct: 93 LLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK-DG 151
Query: 537 RMKIAQMLLQKDA 549
I +L A
Sbjct: 152 DTDIQDLLRGDAA 164
Score = 150 bits (382), Expect = 3e-42
Identities = 46/160 (28%), Positives = 66/160 (41%), Gaps = 2/160 (1%)
Query: 639 KNGYTPLHIAAKKNQMDIATTLLEYN-AKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHG 697
L AAK ++ L TPLH +A + L++HG
Sbjct: 6 SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG 65
Query: 698 ATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVR 757
A V + K GL PLH VA + + +GA ++ FTPLH A+ G+ + +
Sbjct: 66 ADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICK 125
Query: 758 YLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGA 797
L+++GA+ G TPL G I DLL G A
Sbjct: 126 LLLQHGADPTKKNRDGNTPLDLVK-DGDTDIQDLLRGDAA 164
Score = 149 bits (378), Expect = 9e-42
Identities = 57/201 (28%), Positives = 79/201 (39%), Gaps = 39/201 (19%)
Query: 251 ADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRK-ADPNARALNGFTPLHIAC 309
A N+ L A K V K L + + TPLH A
Sbjct: 2 AMGNS---EADRQLLEAAKAG--------DVETVKKLCTVQSVNCRDIEGRQSTPLHFAA 50
Query: 310 KKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGET 369
NR VVE LL++GA + A + GL PLH A G +A L++ GA + A + T
Sbjct: 51 GYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFT 110
Query: 370 PLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETP 429
PLH AA + +I ++LL++GA + R+ G TP
Sbjct: 111 PLHEAAAKGKYEICKLLLQHGADPTKKNRD--------------------------GNTP 144
Query: 430 LHLAARANQTDIVRILLRNGA 450
L L TDI +L + A
Sbjct: 145 LDLVKD-GDTDIQDLLRGDAA 164
Score = 147 bits (375), Expect = 3e-41
Identities = 45/147 (30%), Positives = 62/147 (42%), Gaps = 2/147 (1%)
Query: 73 GQEEVAKILVD-NGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITP 131
G E K L TPL+ AA N VV YLL G + + + P
Sbjct: 19 GDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVP 78
Query: 132 LHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKT 191
LH AC +G + ELL+ GA + TPLH AA G + +L++ GA K
Sbjct: 79 LHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN 138
Query: 192 KNGLAPLHMASQGDHEAATRVLIYHGA 218
++G PL + GD + +L A
Sbjct: 139 RDGNTPLDLVKDGDTDIQ-DLLRGDAA 164
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 170 bits (433), Expect = 2e-48
Identities = 44/228 (19%), Positives = 82/228 (35%), Gaps = 12/228 (5%)
Query: 560 ILTESGASITATTKKGFTP---LHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVAS 616
+ S + P L AA G +++ Q +++ + G+T LH A
Sbjct: 3 SVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAI 62
Query: 617 HYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAE-SKAGF 675
+ ++ L+ GA+ ++ +G+TPLH AA N I L+++ A A G
Sbjct: 63 CGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGA 122
Query: 676 TPLHL--SAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEI 733
T +EG+ D ++ L + ++ + L + E ++ G +
Sbjct: 123 TAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAE---FGDELSFREGESV 179
Query: 734 DPVTK--AGFTPLHIASHFGQLNMV-RYLVENGANVNATTNLGYTPLH 778
+ + T A+ GQ V R V + H
Sbjct: 180 TVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQRSKVKHHHH 227
Score = 170 bits (432), Expect = 2e-48
Identities = 44/236 (18%), Positives = 73/236 (30%), Gaps = 16/236 (6%)
Query: 111 VRYLLSKGGNQTLATEHNITP---LHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHC 167
+R +L K G+ A + P L A G++ +V+ + + + +G+T LH
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60
Query: 168 AARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITV-D 226
A + +++D LI GA + S +G PLH A+ + L+ HGA + T+ D
Sbjct: 61 AICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSD 120
Query: 227 YLTALHVASHC--GHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVA 284
TA G+ A L D + L +
Sbjct: 121 GATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAE---------FGDEL 171
Query: 285 KTLLDRKADPNARALNGFTPLHIACKKNRYKVVE-LLLKYGASIAATTESGLTPLH 339
R T A + V + H
Sbjct: 172 SFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQRSKVKHHHH 227
Score = 169 bits (431), Expect = 4e-48
Identities = 40/234 (17%), Positives = 67/234 (28%), Gaps = 12/234 (5%)
Query: 144 VELLISKGANIEAKTR---DGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHM 200
+ ++ K + R + L L AA +G V+ +++ + G+ LH
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60
Query: 201 ASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALN- 259
A G + + LI GA V+ T LH A+ C + L+ A A L+
Sbjct: 61 AICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSD 120
Query: 260 GFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVEL 319
G T + A L D + L + +
Sbjct: 121 GATAFEKC------DPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFG-DELSF 173
Query: 320 LLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHL 373
++ T A+ G G P R + H
Sbjct: 174 REGESVTVLRRDGPEETDWWWAALHGQEGYVPRNY-FGLFPRVKPQRSKVKHHH 226
Score = 164 bits (417), Expect = 3e-46
Identities = 49/266 (18%), Positives = 76/266 (28%), Gaps = 43/266 (16%)
Query: 383 VRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIV 442
+R +LR S R PL L AA + ++V
Sbjct: 1 MRSVLRKAGSPRKARRARLNPL-----------------------VLLLDAALTGELEVV 37
Query: 443 RILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKE 502
+ ++ E T LH A N I L+ GA+V++P G+T LH +A
Sbjct: 38 QQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASC 97
Query: 503 GQDEVASILTESGASITATTKK-GFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASIL 561
+ L + GA+I ATT G T Y A+ L
Sbjct: 98 NDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYA---------------DCATYL 142
Query: 562 TESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQ 621
+ S+ L + + V + T A+ + +
Sbjct: 143 ADVEQSMGLMNSGAVYALWDYSA-EFGDELSFREGESVTVLRRDGPEETDWWWAALHGQE 201
Query: 622 N-VALLLLDRGASPHAVAKNGYTPLH 646
V G P + H
Sbjct: 202 GYVPRNYF--GLFPRVKPQRSKVKHH 225
Score = 163 bits (415), Expect = 5e-46
Identities = 40/200 (20%), Positives = 67/200 (33%), Gaps = 7/200 (3%)
Query: 79 KILVDNGATINVQ---SLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVA 135
+ ++ + LN L AA VV+ + + + + E IT LH A
Sbjct: 2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNA 61
Query: 136 CKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKT-KNG 194
++V+ LI+ GAN+ + G TPLHCAA + L++ GAA+++ T +G
Sbjct: 62 ICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDG 121
Query: 195 LAPLHMASQGD--HEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKAD 252
+ L + + + AL S
Sbjct: 122 ATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYS-AEFGDELSFREGESVT 180
Query: 253 PNARALNGFTPLHIACKKNR 272
R T A +
Sbjct: 181 VLRRDGPEETDWWWAALHGQ 200
Score = 162 bits (411), Expect = 2e-45
Identities = 54/252 (21%), Positives = 78/252 (30%), Gaps = 32/252 (12%)
Query: 285 KTLLDRKADPNAR---ALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVA 341
+++L + P LN L A +VV+ +K + E G+T LH A
Sbjct: 2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNA 61
Query: 342 SFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQ 401
+I FL+ AGA ++ G TPLH AA N T I L+++GA++ A D
Sbjct: 62 ICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSD- 120
Query: 402 TPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQT--DIVRILLRNGASVDARARED 459
G T + D L S+
Sbjct: 121 ------------------------GATAFEKCDPYREGYADCATYLADVEQSMGLMNSGA 156
Query: 460 QTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDE-VASILTESGASI 518
L S GD S +V T +A GQ+ V +
Sbjct: 157 VYALWDYSA-EFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRV 215
Query: 519 TATTKKGFTPLH 530
K H
Sbjct: 216 KPQRSKVKHHHH 227
Score = 155 bits (394), Expect = 3e-43
Identities = 37/188 (19%), Positives = 59/188 (31%), Gaps = 4/188 (2%)
Query: 601 VDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTL 660
N + L A+ V + P + G T LH A I L
Sbjct: 14 ARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFL 73
Query: 661 LEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQ-AKNGLTPLHLCA--QE 717
+ A N+ G+TPLH +A T + L++HGA + +G T C +E
Sbjct: 74 ITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYRE 133
Query: 718 DKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPL 777
+ AT + + L S + + + V T
Sbjct: 134 GYADCATYLADVEQSMGLMNSGAVYALWDYSA-EFGDELSFREGESVTVLRRDGPEETDW 192
Query: 778 HQASQQGR 785
A+ G+
Sbjct: 193 WWAALHGQ 200
Score = 154 bits (391), Expect = 8e-43
Identities = 39/199 (19%), Positives = 63/199 (31%), Gaps = 9/199 (4%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
G+ EV + V + + G T L+ A + +V +L++ G N H TPL
Sbjct: 32 GELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPL 91
Query: 133 HVACKWGKVAMVELLISKGANIEAKTR-DGLTPLHCAARS--GHDNVIDILIEKGAALYS 189
H A + L+ GA I A T DG T G+ + L + ++
Sbjct: 92 HCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGL 151
Query: 190 KTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDY--LTALHVASHCGHVR-VAKTL 246
+ L S + + G V + D T A+ G V +
Sbjct: 152 MNSGAVYALWDYSAEFGDE---LSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNY 208
Query: 247 LDRKADPNARALNGFTPLH 265
+ H
Sbjct: 209 FGLFPRVKPQRSKVKHHHH 227
Score = 148 bits (377), Expect = 8e-41
Identities = 52/234 (22%), Positives = 76/234 (32%), Gaps = 21/234 (8%)
Query: 244 KTLLDRKADPNAR---ALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALN 300
+++L + P LN L A + V + + DP+
Sbjct: 2 RSVLRKAGSPRKARRARLNPLVLLLDAALTG--------ELEVVQQAVKEMNDPSQPNEE 53
Query: 301 GFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAP 360
G T LH A Y +V+ L+ GA++ + G TPLH A+ I + L+Q GAA
Sbjct: 54 GITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAI 113
Query: 361 DTATVR-GETPLHLAARANQT--DIVRILLRNGASVDARAREDQTPLHVASR-----LRR 412
T+ G T + D L S+ L S L
Sbjct: 114 FATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELSF 173
Query: 413 FSSASQSALTR-VRGETPLHLAARANQTDIV-RILLRNGASVDARAREDQTPLH 464
S + L R ET AA Q V R V + + + H
Sbjct: 174 REGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQRSKVKHHHH 227
Score = 106 bits (266), Expect = 6e-26
Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 3/116 (2%)
Query: 692 LLIEHGATVSHQAK---NGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIAS 748
++ + + N L L A ++ V + + + G T LH A
Sbjct: 3 SVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAI 62
Query: 749 HFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTN 804
++V +L+ GANVN+ + G+TPLH A+ +I L+ GA ATT
Sbjct: 63 CGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTL 118
Score = 52.6 bits (127), Expect = 9e-08
Identities = 10/81 (12%), Positives = 23/81 (28%), Gaps = 16/81 (19%)
Query: 756 VRYLVENGANVNATTNLGYTP---LHQASQQGRVLIIDLLLGAGAQPNATTN-----LFC 807
+R ++ + P L A+ G + ++ + P+ L
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60
Query: 808 CAT--------ILVKNGAEID 820
L+ GA ++
Sbjct: 61 AICGANYSIVDFLITAGANVN 81
Score = 39.2 bits (92), Expect = 0.003
Identities = 9/64 (14%), Positives = 17/64 (26%), Gaps = 6/64 (9%)
Query: 71 ATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVV-RYLLS-----KGGNQTLA 124
+ + T+ + T + AA +G V R K +
Sbjct: 164 SAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQRSKVK 223
Query: 125 TEHN 128
H+
Sbjct: 224 HHHH 227
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 161 bits (410), Expect = 3e-46
Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 18/169 (10%)
Query: 426 GETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASV 485
L AARA Q D VRIL+ NGA +PLH+A++ G+ +LL+ G S
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGAPFTTD-WLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60
Query: 486 DAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLL 545
DA TK T LH++A EG + +L + GA + A T LH A ++ ++ ++L+
Sbjct: 61 DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLI 120
Query: 546 QKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 594
+ GA + +K T ++ G +A++L
Sbjct: 121 KY-----------------GADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 160 bits (408), Expect = 6e-46
Identities = 59/178 (33%), Positives = 83/178 (46%), Gaps = 27/178 (15%)
Query: 367 GETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRG 426
L AARA Q D VRIL+ NGA D G
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGAPFTT----DW-----------------------LG 34
Query: 427 ETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVD 486
+PLHLAA+ +LLR G S DAR + D+TPLH+A+ G+ +I +LL+HGA V+
Sbjct: 35 TSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVN 94
Query: 487 APTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
A TALH + + EV +L + GA + +K T ++ G +A++L
Sbjct: 95 AKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 160 bits (407), Expect = 7e-46
Identities = 48/169 (28%), Positives = 77/169 (45%), Gaps = 18/169 (10%)
Query: 525 GFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAK 584
L AA+ G+ ++L+ AP T G +PLHLAA+
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGAPF------------------TTDWLGTSPLHLAAQ 43
Query: 585 YGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTP 644
YG ++LL+ D++ K TPLH+A+ H N+ +LL GA +A T
Sbjct: 44 YGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTA 103
Query: 645 LHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLL 693
LH A + N ++ L++Y A + +SK T +S G+ D++ +L
Sbjct: 104 LHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 157 bits (401), Expect = 4e-45
Identities = 46/153 (30%), Positives = 82/153 (53%), Gaps = 1/153 (0%)
Query: 94 NGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGAN 153
+ L AA+ D VR L++ G T +PLH+A ++G + E+L+ G +
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59
Query: 154 IEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVL 213
+A+T+ TPLH AA GH N++++L++ GA + +K + LH A++ +H+ +L
Sbjct: 60 RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELL 119
Query: 214 IYHGAGVDEITVDYLTALHVASHCGHVRVAKTL 246
I +GA V + TA ++ G+ +A+ L
Sbjct: 120 IKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 157 bits (400), Expect = 6e-45
Identities = 57/170 (33%), Positives = 81/170 (47%), Gaps = 18/170 (10%)
Query: 491 DGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAP 550
D L +A+ GQD+ IL +GA T G +PLHLAA+YG ++LL+
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPF-TTDWLGTSPLHLAAQYGHFSTTEVLLRA--- 56
Query: 551 VDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVT 610
G S A TK TPLH+AA G I ++LL+ A V+++ +T
Sbjct: 57 --------------GVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMT 102
Query: 611 PLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTL 660
LH A+ ++HQ V LL+ GA H +K T I+ D+A L
Sbjct: 103 ALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 155 bits (394), Expect = 4e-44
Identities = 43/143 (30%), Positives = 69/143 (48%), Gaps = 1/143 (0%)
Query: 130 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 189
L A + G+ V +L++ GA G +PLH AA+ GH + ++L+ G + +
Sbjct: 4 KKLLEAARAGQDDEVRILMANGAPF-TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA 62
Query: 190 KTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDR 249
+TK PLHMA+ H VL+ HGA V+ + +TALH A+ H V + L+
Sbjct: 63 RTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY 122
Query: 250 KADPNARALNGFTPLHIACKKNR 272
AD + ++ T I+
Sbjct: 123 GADVHTQSKFCKTAFDISIDNGN 145
Score = 150 bits (383), Expect = 1e-42
Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 1/153 (0%)
Query: 640 NGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGAT 699
+ L AA+ Q D L+ A + G +PLHL+AQ GH + +L+ G +
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPFTTD-WLGTSPLHLAAQYGHFSTTEVLLRAGVS 59
Query: 700 VSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYL 759
+ K TPLH+ A E N+ + + +GA+++ T LH A+ +V L
Sbjct: 60 RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELL 119
Query: 760 VENGANVNATTNLGYTPLHQASQQGRVLIIDLL 792
++ GA+V+ + T + G + ++L
Sbjct: 120 IKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 150 bits (381), Expect = 3e-42
Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 1/149 (0%)
Query: 575 GFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASP 634
L AA+ G+ ++L+ AP G +PLH+A+ Y H + +LL G S
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60
Query: 635 HAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLI 694
A K TPLH+AA + +I LL++ A NA+ T LH + + H ++ LLI
Sbjct: 61 DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLI 120
Query: 695 EHGATVSHQAKNGLTPLHLCAQEDKVNVA 723
++GA V Q+K T + ++A
Sbjct: 121 KYGADVHTQSKFCKTAFDISIDNGNEDLA 149
Score = 148 bits (376), Expect = 1e-41
Identities = 41/161 (25%), Positives = 65/161 (40%), Gaps = 9/161 (5%)
Query: 226 DYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAK 285
D L A+ G + L+ A G +PLH+A + H +
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPFTTDW-LGTSPLHLAAQYG--------HFSTTE 51
Query: 286 TLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMG 345
LL +AR TPLH+A + +VE+LLK+GA + A +T LH A+
Sbjct: 52 VLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHN 111
Query: 346 CMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRIL 386
+ L++ GA T + +T ++ D+ IL
Sbjct: 112 HQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 148 bits (376), Expect = 1e-41
Identities = 44/141 (31%), Positives = 75/141 (53%), Gaps = 1/141 (0%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
GQ++ +IL+ NGA G +PL++AAQ H LL G ++ T+ + TPL
Sbjct: 13 GQDDEVRILMANGAPFTTDW-LGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPL 71
Query: 133 HVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTK 192
H+A G +VE+L+ GA++ AK +T LH A H V+++LI+ GA +++++K
Sbjct: 72 HMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSK 131
Query: 193 NGLAPLHMASQGDHEAATRVL 213
++ +E +L
Sbjct: 132 FCKTAFDISIDNGNEDLAEIL 152
Score = 139 bits (354), Expect = 1e-38
Identities = 39/151 (25%), Positives = 66/151 (43%), Gaps = 9/151 (5%)
Query: 259 NGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVE 318
+ L A + + L+ A G +PLH+A + + E
Sbjct: 1 DLGKKLLEA--------ARAGQDDEVRILMANGAPFTTDW-LGTSPLHLAAQYGHFSTTE 51
Query: 319 LLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARAN 378
+LL+ G S A T+ TPLH+A+ G NI LL+ GA + + T LH A N
Sbjct: 52 VLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHN 111
Query: 379 QTDIVRILLRNGASVDARAREDQTPLHVASR 409
++V +L++ GA V +++ +T ++
Sbjct: 112 HQEVVELLIKYGADVHTQSKFCKTAFDISID 142
Score = 131 bits (333), Expect = 8e-36
Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 1/131 (0%)
Query: 674 GFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEI 733
L +A+ G D +L+ +GA + G +PLHL AQ + + + G
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60
Query: 734 DPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLL 793
D TK TPLH+A+ G N+V L+++GA+VNA L T LH A++ +++LL+
Sbjct: 61 DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLI 120
Query: 794 GAGAQPNATTN 804
GA + +
Sbjct: 121 KYGADVHTQSK 131
Score = 84.4 bits (210), Expect = 3e-19
Identities = 35/183 (19%), Positives = 60/183 (32%), Gaps = 77/183 (42%)
Query: 2 QQGHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCKAAALLLEVSFSNTKLEVSLSN 57
Q GH VLL D + KV LH+AA +
Sbjct: 43 QYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASE------------------------- 77
Query: 58 TKLEVSLSNTKFEATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSK 117
G + ++L+ +GA +N + + T L+ A + NH V
Sbjct: 78 ---------------GHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEV------- 115
Query: 118 GGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVI 177
VELLI GA++ +++ T + +G++++
Sbjct: 116 --------------------------VELLIKYGADVHTQSKFCKTAFDISIDNGNEDLA 149
Query: 178 DIL 180
+IL
Sbjct: 150 EIL 152
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 161 bits (410), Expect = 4e-46
Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 17/175 (9%)
Query: 425 RGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGAS 484
L AA + + LL+N +V+A+ +T L V GN +IA LL GA+
Sbjct: 4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGAN 62
Query: 485 VDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
D + G+ +H +A+ G + L E A + +G PLHLAAK G +++ + L
Sbjct: 63 PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 122
Query: 545 LQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDA 599
++ A ++ KG T LA YGR ++ ++ A
Sbjct: 123 VKHTAS----------------NVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 158 bits (402), Expect = 4e-45
Identities = 52/193 (26%), Positives = 79/193 (40%), Gaps = 33/193 (17%)
Query: 572 TKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRG 631
+ L AA G ++ LLQ + V++Q G T L V + +A LL RG
Sbjct: 2 AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRG 60
Query: 632 ASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSS 691
A+P + G+ +H AA+ +D TLLE+ A N E G PLHL+A+EGH +
Sbjct: 61 ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVE 120
Query: 692 LLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFG 751
L++H A + + G T +A +G
Sbjct: 121 FLVKHTA--------------------------------SNVGHRNHKGDTACDLARLYG 148
Query: 752 QLNMVRYLVENGA 764
+ +V + NGA
Sbjct: 149 RNEVVSLMQANGA 161
Score = 156 bits (397), Expect = 2e-44
Identities = 40/167 (23%), Positives = 74/167 (44%), Gaps = 10/167 (5%)
Query: 226 DYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAK 285
+ L A+ G + +LL + NA+ G T L + + +A+
Sbjct: 4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL---------GNPEIAR 54
Query: 286 TLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMG 345
LL R A+P+ + GF +H A + ++ LL++ A + G PLH+A+ G
Sbjct: 55 RLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG 114
Query: 346 CMNIAIFLLQAGAA-PDTATVRGETPLHLAARANQTDIVRILLRNGA 391
+ + FL++ A+ +G+T LA + ++V ++ NGA
Sbjct: 115 HLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 154 bits (392), Expect = 1e-43
Identities = 42/159 (26%), Positives = 60/159 (37%), Gaps = 2/159 (1%)
Query: 94 NGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGAN 153
L AA + LL N T L V K G + L+ +GAN
Sbjct: 4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVM-KLGNPEIARRLLLRGAN 62
Query: 154 IEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVL 213
+ K R G +H AAR+G + + L+E A + + G PLH+A++ H L
Sbjct: 63 PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 122
Query: 214 IYHGAG-VDEITVDYLTALHVASHCGHVRVAKTLLDRKA 251
+ H A V TA +A G V + A
Sbjct: 123 VKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 153 bits (390), Expect = 2e-43
Identities = 42/162 (25%), Positives = 78/162 (48%), Gaps = 2/162 (1%)
Query: 637 VAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEH 696
+A+ L AA + ++ T+LL+ N NA++ G T L + + G+ +++ L+
Sbjct: 1 MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV-MKLGNPEIARRLLLR 59
Query: 697 GATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMV 756
GA + + G +H A+ ++ + A+++ G PLH+A+ G L +V
Sbjct: 60 GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVV 119
Query: 757 RYLVENGA-NVNATTNLGYTPLHQASQQGRVLIIDLLLGAGA 797
+LV++ A NV + G T A GR ++ L+ GA
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 152 bits (388), Expect = 4e-43
Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 2/148 (1%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
G E L+ N +N Q+ G T L + + + R LL +G N L +
Sbjct: 16 GDLEQLTSLLQNNVNVNAQNGFGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTGFAVI 74
Query: 133 HVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAA-LYSKT 191
H A + G + ++ L+ A++ + +G PLH AA+ GH V++ L++ A+ + +
Sbjct: 75 HDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRN 134
Query: 192 KNGLAPLHMASQGDHEAATRVLIYHGAG 219
G +A ++ +GAG
Sbjct: 135 HKGDTACDLARLYGRNEVVSLMQANGAG 162
Score = 152 bits (388), Expect = 4e-43
Identities = 37/169 (21%), Positives = 62/169 (36%), Gaps = 10/169 (5%)
Query: 125 TEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKG 184
E L A G + + L+ N+ A+ G T L G+ + L+ +G
Sbjct: 2 AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRG 60
Query: 185 AALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAK 244
A K + G A +H A++ + L+ A V+ + LH+A+ GH+RV +
Sbjct: 61 ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVE 120
Query: 245 TLLDRKA-DPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKA 292
L+ A + R G T +A V + A
Sbjct: 121 FLVKHTASNVGHRNHKGDTACDLARLY--------GRNEVVSLMQANGA 161
Score = 150 bits (381), Expect = 3e-42
Identities = 44/170 (25%), Positives = 70/170 (41%), Gaps = 10/170 (5%)
Query: 191 TKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRK 250
+ L A+ L+ + V+ TAL V G+ +A+ LL R
Sbjct: 2 AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRG 60
Query: 251 ADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACK 310
A+P+ + GF +H A + + +TLL+ +AD N G PLH+A K
Sbjct: 61 ANPDLKDRTGFAVIHDA--------ARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAK 112
Query: 311 KNRYKVVELLLKYGAS-IAATTESGLTPLHVASFMGCMNIAIFLLQAGAA 359
+ +VVE L+K+ AS + G T +A G + + GA
Sbjct: 113 EGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162
Score = 148 bits (377), Expect = 1e-41
Identities = 41/178 (23%), Positives = 69/178 (38%), Gaps = 19/178 (10%)
Query: 489 TKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKD 548
+ L +A G E + L ++ ++ A G T L + G +IA+ LL +
Sbjct: 2 AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLR- 59
Query: 549 APVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNG 608
GA+ + GF +H AA+ G + Q LL+ A V+ + G
Sbjct: 60 ----------------GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEG 103
Query: 609 VTPLHVASHYDHQNVALLLLDRGAS-PHAVAKNGYTPLHIAAKKNQMDIATTLLEYNA 665
PLH+A+ H V L+ AS G T +A + ++ + + A
Sbjct: 104 NLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 143 bits (364), Expect = 6e-40
Identities = 49/187 (26%), Positives = 74/187 (39%), Gaps = 28/187 (14%)
Query: 331 TESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNG 390
E L A+ G + LLQ + G T L + +I R LL G
Sbjct: 2 AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRG 60
Query: 391 ASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGA 450
A+ D + R G +H AARA D ++ LL A
Sbjct: 61 ANPDLKDRT--------------------------GFAVIHDAARAGFLDTLQTLLEFQA 94
Query: 451 SVDARAREDQTPLHVASRLGNGDIASLLLQHGAS-VDAPTKDGYTALHISAKEGQDEVAS 509
V+ E PLH+A++ G+ + L++H AS V G TA ++ G++EV S
Sbjct: 95 DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVS 154
Query: 510 ILTESGA 516
++ +GA
Sbjct: 155 LMQANGA 161
Score = 137 bits (348), Expect = 1e-37
Identities = 42/193 (21%), Positives = 70/193 (36%), Gaps = 36/193 (18%)
Query: 259 NGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVE 318
L A + + +LL + NA+ G T L + K ++
Sbjct: 4 PWGNELASAAARG--------DLEQLTSLLQNNVNVNAQNGFGRTALQVM-KLGNPEIAR 54
Query: 319 LLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARAN 378
LL GA+ +G +H A+ G ++ LL+ A + G PLHLAA+
Sbjct: 55 RLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG 114
Query: 379 QTDIVRILLRNGAS-VDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARAN 437
+V L+++ AS V R + G+T LA
Sbjct: 115 HLRVVEFLVKHTASNVGHRNHK--------------------------GDTACDLARLYG 148
Query: 438 QTDIVRILLRNGA 450
+ ++V ++ NGA
Sbjct: 149 RNEVVSLMQANGA 161
Score = 130 bits (331), Expect = 2e-35
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 71 ATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNIT 130
G E+A+ L+ GA +++ GF ++ AA+ ++ LL + +
Sbjct: 46 KLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNL 105
Query: 131 PLHVACKWGKVAMVELLISKGA-NIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAA 186
PLH+A K G + +VE L+ A N+ + G T A G + V+ ++ GA
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162
Score = 74.3 bits (184), Expect = 1e-15
Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 14/98 (14%)
Query: 736 VTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGA 795
+ + L A+ G L + L++N NVNA G T L G I LL
Sbjct: 1 MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLR 59
Query: 796 GAQPNATTN-----LFC--------CATILVKNGAEID 820
GA P+ + L++ A+++
Sbjct: 60 GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVN 97
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 155 bits (394), Expect = 5e-44
Identities = 37/159 (23%), Positives = 63/159 (39%), Gaps = 7/159 (4%)
Query: 566 ASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVAL 625
+ ++ + L AA GR++ + LL+ A ++ G P+ V VA
Sbjct: 3 PAAGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAE 61
Query: 626 LLLDRGASPHAVAKNGYT-PLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQE 684
LLL GA P+ T P+H AA++ +D L A+ + G P+ L+ +
Sbjct: 62 LLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEEL 121
Query: 685 GHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVA 723
GH D++ L G + A E ++
Sbjct: 122 GHRDVARYLRAAAGGT-----RGSNHARIDAAEGPSDIP 155
Score = 153 bits (390), Expect = 2e-43
Identities = 39/167 (23%), Positives = 60/167 (35%), Gaps = 24/167 (14%)
Query: 426 GETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASV 485
L AA + + VR LL GA+ +A + P+ V G+ +A LLL HGA
Sbjct: 12 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSARVAELLLLHGAEP 70
Query: 486 DAPTKDGYT-ALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
+ T +H +A+EG + +L +GA + G P+ LA + G +A+ L
Sbjct: 71 NCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130
Query: 545 LQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIA 591
G + A G I
Sbjct: 131 RAAAGGTR----------------------GSNHARIDAAEGPSDIP 155
Score = 151 bits (385), Expect = 9e-43
Identities = 38/163 (23%), Positives = 58/163 (35%), Gaps = 9/163 (5%)
Query: 82 VDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKV 141
++ A +++ L AA VR LL G N + P+ V G
Sbjct: 1 MEPAAGSSME--PSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSA 57
Query: 142 AMVELLISKGANIEAKTRDGLT-PLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHM 200
+ ELL+ GA LT P+H AAR G + + +L GA L + G P+ +
Sbjct: 58 RVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDL 117
Query: 201 ASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVA 243
A + H R L G + + G +
Sbjct: 118 AEELGHRDVARYLRAAAGGTRGS-----NHARIDAAEGPSDIP 155
Score = 151 bits (383), Expect = 1e-42
Identities = 37/189 (19%), Positives = 64/189 (33%), Gaps = 35/189 (18%)
Query: 354 LQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRF 413
++ A ++ L AA + + VR LL GA+ +A + P+ V
Sbjct: 1 MEPAA--GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM---- 54
Query: 414 SSASQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQT-PLHVASRLGNG 472
+ +LL +GA + T P+H A+R G
Sbjct: 55 -----------------------GSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFL 91
Query: 473 DIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLA 532
D +L + GA +D G + ++ + G +VA L + +G +
Sbjct: 92 DTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGT-----RGSNHARID 146
Query: 533 AKYGRMKIA 541
A G I
Sbjct: 147 AAEGPSDIP 155
Score = 149 bits (378), Expect = 6e-42
Identities = 32/172 (18%), Positives = 53/172 (30%), Gaps = 17/172 (9%)
Query: 148 ISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHE 207
+ A + L AA G + L+E GA + G P+ + G
Sbjct: 1 MEPAAG--SSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMG-SA 57
Query: 208 AATRVLIYHGAGVDEITVDYLT-ALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHI 266
+L+ HGA + LT +H A+ G + L A + R G P+ +
Sbjct: 58 RVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDL 117
Query: 267 ACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVE 318
A + H VA+ L I + + +
Sbjct: 118 AEELG--------HRDVARYLRAAAGGTRGS-----NHARIDAAEGPSDIPD 156
Score = 149 bits (378), Expect = 7e-42
Identities = 39/169 (23%), Positives = 62/169 (36%), Gaps = 17/169 (10%)
Query: 216 HGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKS 275
AG L A+ G V + LL+ A+PNA G P+ +
Sbjct: 3 PAAGSS--MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM------ 54
Query: 276 SHCNHVWVAKTLLDRKADPNARALNGFT-PLHIACKKNRYKVVELLLKYGASIAATTESG 334
VA+ LL A+PN T P+H A ++ + +L + GA + G
Sbjct: 55 ---GSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWG 111
Query: 335 LTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIV 383
P+ +A +G ++A +L A G + A +DI
Sbjct: 112 RLPVDLAEELGHRDVARYLRAAAGGTR-----GSNHARIDAAEGPSDIP 155
Score = 147 bits (373), Expect = 3e-41
Identities = 44/186 (23%), Positives = 61/186 (32%), Gaps = 33/186 (17%)
Query: 291 KADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIA 350
+ + L A + R + V LL+ GA+ A G P+ V MG +A
Sbjct: 2 EPAAGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVA 60
Query: 351 IFLLQAGAAPDTATVRGET-PLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASR 409
LL GA P+ A T P+H AAR D + +L R GA +D R
Sbjct: 61 ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAW---------- 110
Query: 410 LRRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRL 469
G P+ LA D+ R L + +
Sbjct: 111 ----------------GRLPVDLAEELGHRDVARYLRAAAGGTRGS-----NHARIDAAE 149
Query: 470 GNGDIA 475
G DI
Sbjct: 150 GPSDIP 155
Score = 146 bits (372), Expect = 4e-41
Identities = 41/184 (22%), Positives = 65/184 (35%), Gaps = 31/184 (16%)
Query: 325 ASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVR 384
+ ++ E L A+ G + LL+AGA P+ G P+ + +
Sbjct: 3 PAAGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSARVAE 61
Query: 385 ILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVRI 444
+LL +GA + T P+H AAR D + +
Sbjct: 62 LLLLHGAEPNCADPATLT-------------------------RPVHDAAREGFLDTLVV 96
Query: 445 LLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQ 504
L R GA +D R + P+ +A LG+ D+A L G I A EG
Sbjct: 97 LHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGT-----RGSNHARIDAAEGP 151
Query: 505 DEVA 508
++
Sbjct: 152 SDIP 155
Score = 144 bits (365), Expect = 4e-40
Identities = 33/143 (23%), Positives = 47/143 (32%), Gaps = 7/143 (4%)
Query: 130 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 189
L A G+V V L+ GAN A G P+ G V ++L+ GA
Sbjct: 14 DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSARVAELLLLHGAEPNC 72
Query: 190 KTKNGL-APLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLD 248
L P+H A++ VL GA +D + +A GH VA+ L
Sbjct: 73 ADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA 132
Query: 249 RKADPNARALNGFTPLHIACKKN 271
I +
Sbjct: 133 AAGGTRGS-----NHARIDAAEG 150
Score = 143 bits (363), Expect = 7e-40
Identities = 36/182 (19%), Positives = 58/182 (31%), Gaps = 35/182 (19%)
Query: 598 DAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIA 657
+ S + L A+ LL+ GA+P+A G P+ + +A
Sbjct: 2 EPAAGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSARVA 60
Query: 658 TTLLEYNAKPNAESKAGFT-PLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQ 716
LL + A+PN A T P+H +A+EG D +L GA
Sbjct: 61 ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGA------------------ 102
Query: 717 EDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTP 776
+D G P+ +A G ++ RYL + +
Sbjct: 103 ---------------RLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDA 147
Query: 777 LH 778
Sbjct: 148 AE 149
Score = 143 bits (362), Expect = 8e-40
Identities = 36/161 (22%), Positives = 57/161 (35%), Gaps = 15/161 (9%)
Query: 250 KADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIAC 309
+ + L A + V + LL+ A+PNA G P+ +
Sbjct: 2 EPAAGSSMEPSADWLATAAAR--------GRVEEVRALLEAGANPNAPNSYGRRPIQVMM 53
Query: 310 KKNRYKVVELLLKYGASIAATTESGLT-PLHVASFMGCMNIAIFLLQAGAAPDTATVRGE 368
+V ELLL +GA + LT P+H A+ G ++ + L +AGA D G
Sbjct: 54 -MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGR 112
Query: 369 TPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASR 409
P+ LA D+ R L + +
Sbjct: 113 LPVDLAEELGHRDVARYLRAAAGGTRGS-----NHARIDAA 148
Score = 139 bits (354), Expect = 1e-38
Identities = 35/178 (19%), Positives = 61/178 (34%), Gaps = 35/178 (19%)
Query: 628 LDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHT 687
++ A + + L AA + +++ LLE A PNA + G P+ + G
Sbjct: 1 MEPAAG--SSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSA 57
Query: 688 DMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIA 747
++ LL+ HGA + LT P+H A
Sbjct: 58 RVAELLLLHGAEPNCADPATLT--------------------------------RPVHDA 85
Query: 748 SHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNL 805
+ G L+ + L GA ++ G P+ A + G + L A + +
Sbjct: 86 AREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHA 143
Score = 135 bits (343), Expect = 4e-37
Identities = 28/128 (21%), Positives = 47/128 (36%), Gaps = 2/128 (1%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNIT-P 131
G+ E + L++ GA N + G P+ + V LL G A +T P
Sbjct: 23 GRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSARVAELLLLHGAEPNCADPATLTRP 81
Query: 132 LHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKT 191
+H A + G + + +L GA ++ + G P+ A GH +V L
Sbjct: 82 VHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSN 141
Query: 192 KNGLAPLH 199
+
Sbjct: 142 HARIDAAE 149
Score = 108 bits (273), Expect = 9e-28
Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 6/109 (5%)
Query: 71 ATGQEEVAKILVDNGATINVQSLNGFT-PLYMAAQENHDGVVRYLLSKGGNQTLATEHNI 129
G VA++L+ +GA N T P++ AA+E + L G +
Sbjct: 53 MMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGR 112
Query: 130 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVID 178
P+ +A + G + L + A G ++ D
Sbjct: 113 LPVDLAEELGHRDVARYLRAAAGGTRGS-----NHARIDAAEGPSDIPD 156
Score = 69.8 bits (172), Expect = 3e-14
Identities = 24/150 (16%), Positives = 42/150 (28%), Gaps = 54/150 (36%)
Query: 3 QGHDRVVAVLLEN-------DTKGKVKLPALHIAAKKDDCKAAALLLEVSFSNTKLEVSL 55
G RV +LL + D +H AA++
Sbjct: 54 MGSARVAELLLLHGAEPNCADPATLT--RPVHDAARE----------------------- 88
Query: 56 SNTKLEVSLSNTKFEATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLL 115
G + +L GA ++V+ G P+ +A + H V RYL
Sbjct: 89 -----------------GFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR 131
Query: 116 SKGGNQTLATEHNITPLHVACKWGKVAMVE 145
+ G + + G + +
Sbjct: 132 AAAGGTRGS-----NHARIDAAEGPSDIPD 156
Score = 37.1 bits (87), Expect = 0.006
Identities = 12/114 (10%), Positives = 23/114 (20%), Gaps = 49/114 (42%)
Query: 2 QQGHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCKAAALLLEVSFSNTKLEVSLSN 57
++G + VL D + + +A +
Sbjct: 87 REGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEEL------------------------- 121
Query: 58 TKLEVSLSNTKFEATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVV 111
G +VA+ L G + A E +
Sbjct: 122 ---------------GHRDVARYLRAAAGGT-----RGSNHARIDAAEGPSDIP 155
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 153 bits (390), Expect = 6e-44
Identities = 53/125 (42%), Positives = 82/125 (65%)
Query: 94 NGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGAN 153
NG TPL++AA+ H VV+ LL G + ++ TPLH+A + G + +V+LL+ GA+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 154 IEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVL 213
+ AK ++G TPLH AAR+GH V+ +L+E GA + +K KNG PLH+A++ H ++L
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 214 IYHGA 218
+ GA
Sbjct: 121 LEAGA 125
Score = 148 bits (376), Expect = 6e-42
Identities = 57/124 (45%), Positives = 86/124 (69%)
Query: 426 GETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASV 485
G TPLHLAAR ++V++LL GA V+A+ + +TPLH+A+R G+ ++ LLL+ GA V
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 486 DAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLL 545
+A K+G T LH++A+ G EV +L E+GA + A K G TPLHLAA+ G +++ ++LL
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Query: 546 QKDA 549
+ A
Sbjct: 122 EAGA 125
Score = 144 bits (365), Expect = 2e-40
Identities = 59/124 (47%), Positives = 84/124 (67%)
Query: 575 GFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASP 634
G TPLHLAA+ G +++ ++LL+ A V+++ KNG TPLH+A+ H V LLL+ GA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 635 HAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLI 694
+A KNG TPLH+AA+ +++ LLE A NA+ K G TPLHL+A+ GH ++ LL+
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Query: 695 EHGA 698
E GA
Sbjct: 122 EAGA 125
Score = 142 bits (361), Expect = 6e-40
Identities = 49/113 (43%), Positives = 75/113 (66%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
G EV K+L++ GA +N + NG TPL++AA+ H VV+ LL G + ++ TPL
Sbjct: 13 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL 72
Query: 133 HVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGA 185
H+A + G + +V+LL+ GA++ AK ++G TPLH AAR+GH V+ +L+E GA
Sbjct: 73 HLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 141 bits (358), Expect = 2e-39
Identities = 52/122 (42%), Positives = 80/122 (65%)
Query: 130 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 189
TPLH+A + G + +V+LL+ GA++ AK ++G TPLH AAR+GH V+ +L+E GA + +
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 190 KTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDR 249
K KNG PLH+A++ H ++L+ GA V+ + T LH+A+ GH+ V K LL+
Sbjct: 64 KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 123
Query: 250 KA 251
A
Sbjct: 124 GA 125
Score = 135 bits (344), Expect = 1e-37
Identities = 57/142 (40%), Positives = 85/142 (59%), Gaps = 17/142 (11%)
Query: 491 DGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAP 550
+G T LH++A+ G EV +L E+GA + A K G TPLHLAA+ G +++ ++LL+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA--- 57
Query: 551 VDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVT 610
GA + A K G TPLHLAA+ G +++ ++LL+ A V+++ KNG T
Sbjct: 58 --------------GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT 103
Query: 611 PLHVASHYDHQNVALLLLDRGA 632
PLH+A+ H V LLL+ GA
Sbjct: 104 PLHLAARNGHLEVVKLLLEAGA 125
Score = 134 bits (340), Expect = 4e-37
Identities = 57/133 (42%), Positives = 80/133 (60%), Gaps = 8/133 (6%)
Query: 259 NGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVE 318
NG TPLH+A + H+ V K LL+ AD NA+ NG TPLH+A + +VV+
Sbjct: 1 NGRTPLHLAARNG--------HLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK 52
Query: 319 LLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARAN 378
LLL+ GA + A ++G TPLH+A+ G + + LL+AGA + G TPLHLAAR
Sbjct: 53 LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 112
Query: 379 QTDIVRILLRNGA 391
++V++LL GA
Sbjct: 113 HLEVVKLLLEAGA 125
Score = 133 bits (338), Expect = 7e-37
Identities = 59/158 (37%), Positives = 82/158 (51%), Gaps = 33/158 (20%)
Query: 607 NGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAK 666
NG TPLH+A+ H V LLL+ GA +A KNG TPLH+AA+ +++ LLE A
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 667 PNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATIT 726
NA+ K G TPLHL+A+ GH ++ LL+E
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEA------------------------------ 90
Query: 727 MFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGA 764
GA+++ K G TPLH+A+ G L +V+ L+E GA
Sbjct: 91 ---GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 133 bits (337), Expect = 9e-37
Identities = 56/140 (40%), Positives = 86/140 (61%), Gaps = 17/140 (12%)
Query: 460 QTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASIT 519
+TPLH+A+R G+ ++ LLL+ GA V+A K+G T LH++A+ G EV +L E+GA +
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 520 ATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPL 579
A K G TPLHLAA+ G +++ ++LL+ GA + A K G TPL
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEA-----------------GADVNAKDKNGRTPL 105
Query: 580 HLAAKYGRMKIAQMLLQKDA 599
HLAA+ G +++ ++LL+ A
Sbjct: 106 HLAARNGHLEVVKLLLEAGA 125
Score = 132 bits (335), Expect = 2e-36
Identities = 57/141 (40%), Positives = 84/141 (59%), Gaps = 17/141 (12%)
Query: 525 GFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAK 584
G TPLHLAA+ G +++ ++LL+ GA + A K G TPLHLAA+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEA-----------------GADVNAKDKNGRTPLHLAAR 44
Query: 585 YGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTP 644
G +++ ++LL+ A V+++ KNG TPLH+A+ H V LLL+ GA +A KNG TP
Sbjct: 45 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP 104
Query: 645 LHIAAKKNQMDIATTLLEYNA 665
LH+AA+ +++ LLE A
Sbjct: 105 LHLAARNGHLEVVKLLLEAGA 125
Score = 132 bits (334), Expect = 2e-36
Identities = 63/166 (37%), Positives = 85/166 (51%), Gaps = 41/166 (24%)
Query: 160 DGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAG 219
+G TPLH AAR+GH V+ +L+E GA + +K KNG
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG------------------------- 35
Query: 220 VDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCN 279
T LH+A+ GH+ V K LL+ AD NA+ NG TPLH+A +
Sbjct: 36 --------RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN--------G 79
Query: 280 HVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGA 325
H+ V K LL+ AD NA+ NG TPLH+A + +VV+LLL+ GA
Sbjct: 80 HLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 130 bits (329), Expect = 1e-35
Identities = 57/151 (37%), Positives = 82/151 (54%), Gaps = 26/151 (17%)
Query: 300 NGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAA 359
NG TPLH+A + +VV+LLL+ GA + A ++G TPLH+A+ G + + LL+AGA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 360 PDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQS 419
+ G TPLHLAAR ++V++LL GA V+A+ +
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN-------------------- 100
Query: 420 ALTRVRGETPLHLAARANQTDIVRILLRNGA 450
G TPLHLAAR ++V++LL GA
Sbjct: 101 ------GRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 107 bits (270), Expect = 1e-27
Identities = 46/131 (35%), Positives = 65/131 (49%), Gaps = 33/131 (25%)
Query: 674 GFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEI 733
G TPLHL+A+ GH ++ LL+E GA ++
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGA---------------------------------DV 28
Query: 734 DPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLL 793
+ K G TPLH+A+ G L +V+ L+E GA+VNA G TPLH A++ G + ++ LLL
Sbjct: 29 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 88
Query: 794 GAGAQPNATTN 804
AGA NA
Sbjct: 89 EAGADVNAKDK 99
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 153 bits (388), Expect = 6e-43
Identities = 39/192 (20%), Positives = 64/192 (33%), Gaps = 22/192 (11%)
Query: 514 SGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTK 573
+ + T +G + K G A V
Sbjct: 3 NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV--------------------S 42
Query: 574 KGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGAS 633
+ TP AA+ + LL +D VD+ +NG T L + LL + GA
Sbjct: 43 EYETPWWTAARKADEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD 101
Query: 634 PHAV-AKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSL 692
+ G T LH+AA + ++ L+E A E + G T L L+ + T
Sbjct: 102 LDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGN 161
Query: 693 LIEHGATVSHQA 704
++ G + +
Sbjct: 162 PMQFGRRIGLEK 173
Score = 153 bits (388), Expect = 7e-43
Identities = 45/199 (22%), Positives = 68/199 (34%), Gaps = 32/199 (16%)
Query: 366 RGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVR 425
G + + + A V +
Sbjct: 13 EGAMEYLIEWKDGHSPSWVPSSYIAADVVSE----------------------------- 43
Query: 426 GETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASV 485
ETP AAR + LL VDA +T L + LG+ LL + GA +
Sbjct: 44 YETPWWTAARKADEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL 102
Query: 486 DAP-TKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
D + G TALH++A + EV L E GA I ++G T L LA + +
Sbjct: 103 DHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNP 162
Query: 545 LQKDAPVDSQGKVASILTE 563
+Q + + KV ++L
Sbjct: 163 MQFGRRIGLE-KVINVLEG 180
Score = 151 bits (384), Expect = 2e-42
Identities = 33/173 (19%), Positives = 57/173 (32%), Gaps = 5/173 (2%)
Query: 84 NGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAM 143
N + + G + ++ H + TP A +
Sbjct: 3 NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARKADEQA 59
Query: 144 VELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSK-TKNGLAPLHMAS 202
+ L+ + +++A +G T L A G D + +L E GA L + + GL LHMA+
Sbjct: 60 LSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA 118
Query: 203 QGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNA 255
L+ GA ++ LTAL +A +
Sbjct: 119 GYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGL 171
Score = 151 bits (383), Expect = 3e-42
Identities = 34/181 (18%), Positives = 57/181 (31%), Gaps = 13/181 (7%)
Query: 150 KGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAA 209
+G + GH A P A++ E A
Sbjct: 3 NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAA---DVVSEYETPWWTAARKADEQA 59
Query: 210 TRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALN-GFTPLHIAC 268
L+ VD + + TAL + G + + L + AD + R + G T LH+A
Sbjct: 60 LSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA 118
Query: 269 KKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIA 328
V + L++ AD G T L +A + + +++G I
Sbjct: 119 GYV--------RPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIG 170
Query: 329 A 329
Sbjct: 171 L 171
Score = 149 bits (378), Expect = 2e-41
Identities = 41/198 (20%), Positives = 61/198 (30%), Gaps = 36/198 (18%)
Query: 604 QGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEY 663
G + H + A V TP AA+K + LLE
Sbjct: 10 TAGEGAMEYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARKADEQALSQLLE- 65
Query: 664 NAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVA 723
+ +A + G T L A G LL E GA + H+ G
Sbjct: 66 DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG---------------- 109
Query: 724 TITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQ 783
G T LH+A+ + + +V LVE GA++ G T L A +
Sbjct: 110 ----------------GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREI 153
Query: 784 GRVLIIDLLLGAGAQPNA 801
+ + G +
Sbjct: 154 LKTTPKGNPMQFGRRIGL 171
Score = 147 bits (374), Expect = 5e-41
Identities = 37/216 (17%), Positives = 69/216 (31%), Gaps = 39/216 (18%)
Query: 482 GASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIA 541
+G I K+G + A + + + TP AA+ +
Sbjct: 4 KIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS---EYETPWWTAARKADEQAL 60
Query: 542 QMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPV 601
LL + A + G T L A G K ++L + A +
Sbjct: 61 SQLL------------------EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL 102
Query: 602 DSQ-GKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTL 660
D + + G+T LH+A+ Y V L++ GA + G T L +A + +
Sbjct: 103 DHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNP 162
Query: 661 LEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEH 696
+++ + G + ++L
Sbjct: 163 MQF-----------------GRRIGLEKVINVLEGQ 181
Score = 147 bits (373), Expect = 7e-41
Identities = 45/208 (21%), Positives = 69/208 (33%), Gaps = 31/208 (14%)
Query: 182 EKGAALYSKT-KNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHV 240
E + S+T G + + H + Y A V +Y T A+
Sbjct: 1 EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS---EYETPWWTAARKADE 57
Query: 241 RVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALN 300
+ LL+ D +A NG T L + L + AD + R +
Sbjct: 58 QALSQLLE-DRDVDAVDENGRTALLFVAGLG--------SDKCVRLLAEAGADLDHRDMR 108
Query: 301 -GFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAA 359
G T LH+A R +VVE L++ GA I E GLT L +A +
Sbjct: 109 GGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPK--------- 159
Query: 360 PDTATVRGETPLHLAARANQTDIVRILL 387
P+ R ++ +L
Sbjct: 160 --------GNPMQFGRRIGLEKVINVLE 179
Score = 146 bits (372), Expect = 1e-40
Identities = 38/197 (19%), Positives = 56/197 (28%), Gaps = 29/197 (14%)
Query: 291 KADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIA 350
K + A G I K A + + TP A+
Sbjct: 4 KIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADEQAL 60
Query: 351 IFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRL 410
LL+ D G T L A VR+L GA +D R
Sbjct: 61 SQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG---------- 109
Query: 411 RRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLG 470
G T LH+AA + ++V L+ GA ++ T L +A +
Sbjct: 110 ---------------GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREIL 154
Query: 471 NGDIASLLLQHGASVDA 487
+Q G +
Sbjct: 155 KTTPKGNPMQFGRRIGL 171
Score = 145 bits (369), Expect = 3e-40
Identities = 34/195 (17%), Positives = 60/195 (30%), Gaps = 30/195 (15%)
Query: 130 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 189
+ K G A++ ++ TP AAR + + L+E + +
Sbjct: 16 MEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADEQALSQLLE-DRDVDA 71
Query: 190 KTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDY-LTALHVASHCGHVRVAKTLLD 248
+NG L + + R+L GA +D + LTALH+A+ V + L++
Sbjct: 72 VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVE 131
Query: 249 RKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIA 308
AD G T L +A + +
Sbjct: 132 LGADIEVEDERGLTALELAREIL--------KTTPKGNPMQFGRRIGLEK---------- 173
Query: 309 CKKNRYKVVELLLKY 323
V+ +L
Sbjct: 174 -------VINVLEGQ 181
Score = 144 bits (367), Expect = 5e-40
Identities = 40/225 (17%), Positives = 65/225 (28%), Gaps = 48/225 (21%)
Query: 324 GASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIV 383
+ T G + G + A + ETP AAR +
Sbjct: 4 KIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS---EYETPWWTAARKADEQAL 60
Query: 384 RILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVR 443
LL VDA G T L A VR
Sbjct: 61 SQLL-EDRDVDAVDEN--------------------------GRTALLFVAGLGSDKCVR 93
Query: 444 ILLRNGASVDARARED-QTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKE 502
+L GA +D R T LH+A+ ++ L++ GA ++ + G TAL ++ +
Sbjct: 94 LLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREI 153
Query: 503 GQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQK 547
+ + + G K+ +L +
Sbjct: 154 LKTTPKGNP-----------------MQFGRRIGLEKVINVLEGQ 181
Score = 144 bits (366), Expect = 6e-40
Identities = 35/151 (23%), Positives = 58/151 (38%), Gaps = 5/151 (3%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
G A + TP + AA++ + + LL + + E+ T L
Sbjct: 25 GHSPSWVPSSYIAADVVS---EYETPWWTAARKADEQALSQLL-EDRDVDAVDENGRTAL 80
Query: 133 HVACKWGKVAMVELLISKGANIEAK-TRDGLTPLHCAARSGHDNVIDILIEKGAALYSKT 191
G V LL GA+++ + R GLT LH AA V++ L+E GA + +
Sbjct: 81 LFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVED 140
Query: 192 KNGLAPLHMASQGDHEAATRVLIYHGAGVDE 222
+ GL L +A + + G +
Sbjct: 141 ERGLTALELAREILKTTPKGNPMQFGRRIGL 171
Score = 141 bits (358), Expect = 8e-39
Identities = 37/216 (17%), Positives = 70/216 (32%), Gaps = 37/216 (17%)
Query: 448 NGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEV 507
N A E + + G+ A V + + T +A++ ++
Sbjct: 3 NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS---EYETPWWTAARKADEQA 59
Query: 508 ASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGAS 567
S L E + A + G T L A G K ++L + A +D +
Sbjct: 60 LSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRD------------ 106
Query: 568 ITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLL 627
+ G T LH+AA Y R ++ + L++ A ++ + + G+T L +A
Sbjct: 107 ----MRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNP 162
Query: 628 LDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEY 663
+ G + + L
Sbjct: 163 MQFGR-----------------RIGLEKVINVLEGQ 181
Score = 115 bits (291), Expect = 7e-30
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 5/138 (3%)
Query: 668 NAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITM 727
+ + G + ++GH+ A V TP A++ + +
Sbjct: 8 SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAARKADEQALSQ-L 63
Query: 728 FNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNAT-TNLGYTPLHQASQQGRV 786
++D V + G T L + G VR L E GA+++ G T LH A+ R
Sbjct: 64 LEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRP 123
Query: 787 LIIDLLLGAGAQPNATTN 804
+++ L+ GA
Sbjct: 124 EVVEALVELGADIEVEDE 141
Score = 88.7 bits (221), Expect = 2e-20
Identities = 28/160 (17%), Positives = 53/160 (33%), Gaps = 44/160 (27%)
Query: 2 QQGHDRVVAVLLEN---DTKGKVKLPALHIAAKKDDCKAAALLLEVSFSNTKLEVSLSNT 58
++ ++ ++ LLE+ D + AL A
Sbjct: 53 RKADEQALSQLLEDRDVDAVDENGRTALLFVAGL-------------------------- 86
Query: 59 KLEVSLSNTKFEATGQEEVAKILVDNGATINVQ-SLNGFTPLYMAAQENHDGVVRYLLSK 117
G ++ ++L + GA ++ + G T L+MAA VV L+
Sbjct: 87 --------------GSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVEL 132
Query: 118 GGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAK 157
G + + E +T L +A + K + G I +
Sbjct: 133 GADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLE 172
Score = 84.9 bits (211), Expect = 4e-19
Identities = 27/138 (19%), Positives = 45/138 (32%), Gaps = 18/138 (13%)
Query: 697 GATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMV 756
S A G + ++ + + A++ TP A+ +
Sbjct: 4 KIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAARKADEQAL 60
Query: 757 RYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNAT------TNLFC--- 807
L+E +V+A G T L + G + LL AGA + T L
Sbjct: 61 SQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 119
Query: 808 -----CATILVKNGAEID 820
LV+ GA+I+
Sbjct: 120 YVRPEVVEALVELGADIE 137
Score = 36.7 bits (86), Expect = 0.011
Identities = 5/40 (12%), Positives = 8/40 (20%)
Query: 762 NGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNA 801
N + T G + G A +
Sbjct: 3 NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS 42
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 159 bits (403), Expect = 7e-43
Identities = 51/395 (12%), Positives = 101/395 (25%), Gaps = 45/395 (11%)
Query: 13 LENDTKGKVKLPALHIAAKKDDCKAAALLLEVSFSNTKLEVSLSNTK-LEVSLSNTKFEA 71
END + ++ L + A L L + + L TK +E
Sbjct: 12 YENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYY 71
Query: 72 TGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITP 131
AK L + ++S + + + LL+ + N
Sbjct: 72 AHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQA 131
Query: 132 LHVACKWGKVAMVELLISKGANIEA--KTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 189
+A + G + ++ L + AA +GH +V++ L E +
Sbjct: 132 FRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEAT 191
Query: 190 KT---KNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTL 246
+N A A H L+ + A G V +
Sbjct: 192 AMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA-------YAEIHEFEYGEKYVNPFI 244
Query: 247 LDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLH 306
++ + + L GF L
Sbjct: 245 ARHVNRLKE----MHDAFKLSNPD--------GVFDLVT---------KSECLQGFYMLR 283
Query: 307 IACKKNRYKVVELL--------LKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGA 358
++N +++ + +K A A L +A +G LL +
Sbjct: 284 NLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPS 343
Query: 359 APDTATVRGETPLHLAARANQTDIVRILLRNGASV 393
++ + D+ + L +
Sbjct: 344 VLALTK---ANNYYINETGGRLDLRAVALEHHHHH 375
Score = 150 bits (381), Expect = 6e-40
Identities = 44/377 (11%), Positives = 95/377 (25%), Gaps = 56/377 (14%)
Query: 434 ARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDI-ASLLLQHGASVDAPTKDG 492
+ + + I L +++ Q + + + A L ++
Sbjct: 42 MTLSYKEAIHIFLPGTKNME------QVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVI 95
Query: 493 YTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVD 552
I+ + +L S + + + LAA+ G + + L +
Sbjct: 96 CFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEI 155
Query: 553 SQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPV---DSQGKNGV 609
+ + LAA+ G + + L + Q +N
Sbjct: 156 MAMI---------------QAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYY 200
Query: 610 TPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNA 669
A H NV LLD + + + A+
Sbjct: 201 AFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNP-----------FIARHVN 249
Query: 670 ESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQED--------KVN 721
K LS +G D+ + + G L + + +
Sbjct: 250 RLKEMHDAFKLSNPDGVFDLVT---------KSECLQGFYMLRNLIRRNDEVLLDDIRFL 300
Query: 722 VATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQAS 781
++ + A + L +A G L+ + + T +
Sbjct: 301 LSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKA---NNYYINE 357
Query: 782 QQGRVLIIDLLLGAGAQ 798
GR+ + + L
Sbjct: 358 TGGRLDLRAVALEHHHH 374
Score = 150 bits (381), Expect = 7e-40
Identities = 39/298 (13%), Positives = 87/298 (29%), Gaps = 33/298 (11%)
Query: 424 VRGETPLHLAARA---NQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQ 480
++ E +AA + D + +LL + V E+ +A+ G+ + + L +
Sbjct: 90 IKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCE 149
Query: 481 HGASVDAPTK--DGYTALHISAKEGQDEVASILTESGASITATT--KKGFTPLHLAA-KY 535
+ + Y A ++A+ G V + L E + + + AA
Sbjct: 150 LAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGR 209
Query: 536 GRMKIAQMLLQKDAPVDSQGKVAS-----ILTESGASITATTKKGFTPLHLAAKYGRMKI 590
G + LL + + A K+ L+ G +
Sbjct: 210 GHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDL 269
Query: 591 AQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNV--------ALLLLDRGASPHAVAKNGY 642
S+ G L + + + ++ + A + +
Sbjct: 270 VT---------KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDAN 320
Query: 643 TPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATV 700
L +A + LL + +++ G D+ ++ +EH
Sbjct: 321 ELLRLALRLGNQGACALLLSIPSVLALTKA---NNYYINETGGRLDLRAVALEHHHHH 375
Score = 145 bits (367), Expect = 4e-38
Identities = 44/382 (11%), Positives = 100/382 (26%), Gaps = 55/382 (14%)
Query: 269 KKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIA 328
N ++ L N + L+ A + + + L
Sbjct: 35 SANELSLMTLSYKEAIHIFLPGTK--NMEQVRQLLCLYYA---HYNRNAKQLWSDAHKKG 89
Query: 329 ATTESGLTPLHVASFMGCMN---IAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRI 385
+E VA+ GC + LL + LAA ++
Sbjct: 90 IKSE---VICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNR 146
Query: 386 LLRNGASVDAR--AREDQTPLHVASR---------LRRFSSASQSALTRVRGETPLHLAA 434
L + E+ +A+ L + +A+ + AA
Sbjct: 147 LCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAA 206
Query: 435 RAN-QTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGY 493
+++ LL + G + + +H + K+ +
Sbjct: 207 VGRGHHNVINFLLDCPVMLAYAEIH-------EFEYGEKYVNPFIARHVNRL----KEMH 255
Query: 494 TALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDS 553
A +S +G ++ + + +GF L + + +
Sbjct: 256 DAFKLSNPDGVFDLVT---------KSECLQGFYMLRNLIRRNDEVLLDDI--------- 297
Query: 554 QGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLH 613
+ ++ ++ A L LA + G +LL + + N +
Sbjct: 298 RFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKANN---YY 354
Query: 614 VASHYDHQNVALLLLDRGASPH 635
+ ++ + L+ H
Sbjct: 355 INETGGRLDLRAVALEHHHHHH 376
Score = 138 bits (349), Expect = 9e-36
Identities = 36/270 (13%), Positives = 71/270 (26%), Gaps = 26/270 (9%)
Query: 561 LTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDH 620
L ++ + + +LL D V +A+ H
Sbjct: 81 LWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGH 140
Query: 621 QNVALLLLDRGASPHA--VAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAE--SKAGFT 676
+V L + + + Y +AA+ + + L E +
Sbjct: 141 LHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYY 200
Query: 677 PLHLSAQE-GHTDMSSLLIEHGATVSHQAKNGLTPLHLC-----AQEDKVNVATITMFNG 730
+A GH ++ + L++ +++ + A+ F
Sbjct: 201 AFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKL 260
Query: 731 AEIDPVT--------KAGFTPLHIAS---HFGQLNMVRYL-----VENGANVNATTNLGY 774
+ D V GF L L+ +R+L ++ A
Sbjct: 261 SNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDAN 320
Query: 775 TPLHQASQQGRVLIIDLLLGAGAQPNATTN 804
L A + G LLL + T
Sbjct: 321 ELLRLALRLGNQGACALLLSIPSVLALTKA 350
Score = 100 bits (250), Expect = 8e-23
Identities = 34/273 (12%), Positives = 68/273 (24%), Gaps = 45/273 (16%)
Query: 568 ITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVAS---HYDHQNVA 624
+ T L Y L D +G VA+ +
Sbjct: 54 LPGTKNMEQVRQLLCLYYAHYNRNAKQLWSD--AHKKGIKSEVICFVAAITGCSSALDTL 111
Query: 625 LLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKA--GFTPLHLSA 682
LLL + Y +AA+ + + L E + L+A
Sbjct: 112 CLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAA 171
Query: 683 QEGHTDMSSLLIEHGATVSH---QAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKA 739
+ GH + + L E T + QA+N NV + +
Sbjct: 172 ENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA----- 226
Query: 740 GFTPLHIASHFGQLNMVRYLVENGANVNATTN--------------------LGYTPLHQ 779
+G+ + ++ + + + G+ L
Sbjct: 227 --YAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRN 284
Query: 780 ASQQGRVLIIDLL--------LGAGAQPNATTN 804
++ +++D + + A A
Sbjct: 285 LIRRNDEVLLDDIRFLLSIPGIKALAPTATIPG 317
Score = 66.9 bits (163), Expect = 7e-12
Identities = 29/193 (15%), Positives = 54/193 (27%), Gaps = 34/193 (17%)
Query: 1 MQQGHDRVVAVLLENDTKGKVKLPALHIAAKKDDCKAAALLLEVSFSNTKLEVSLSNTKL 60
+ +GH V+ LL+ A + + V +
Sbjct: 207 VGRGHHNVINFLLDCPVM----------LAYAEIHEFEYGEKYV--------NPFIARHV 248
Query: 61 EVSLSNTKFEATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDG---VVRYLLSK 117
+ LV + L GF L + N + +R+LLS
Sbjct: 249 NRLKEMHDAFKLSNPDGVFDLVTKS-----ECLQGFYMLRNLIRRNDEVLLDDIRFLLSI 303
Query: 118 GGNQTLA-----TEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSG 172
G + LA L +A + G LL+S + + + + G
Sbjct: 304 PGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKANN---YYINETGG 360
Query: 173 HDNVIDILIEKGA 185
++ + +E
Sbjct: 361 RLDLRAVALEHHH 373
Score = 61.1 bits (148), Expect = 5e-10
Identities = 19/159 (11%), Positives = 45/159 (28%), Gaps = 21/159 (13%)
Query: 2 QQGHDRVVAVLLENDTKGKVKLPALHIAAKKDDCKAAALLLEVSFSNTKLEVSLSNTKLE 61
+ G V + + + K A ++ + ++ TK E L
Sbjct: 234 EYGEKYVNPFIARHVNRLKEMHDAFKLSNPDG-------VFDL---VTKSECLQGFYMLR 283
Query: 62 VSLSNTKFEATGQEEVAKIL-----VDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLS 116
+ + + L + A + L +A + + G LLS
Sbjct: 284 NLIRR---NDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLS 340
Query: 117 KGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIE 155
L +N ++ G++ + + + +
Sbjct: 341 IPSVLALTKANN---YYINETGGRLDLRAVALEHHHHHH 376
Score = 55.7 bits (134), Expect = 3e-08
Identities = 12/121 (9%), Positives = 36/121 (29%), Gaps = 5/121 (4%)
Query: 682 AQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGF 741
+ + + + T + + L L+ A ++ + + + ++
Sbjct: 42 MTLSYKEAIHIFLP--GTKNMEQVRQLLCLY-YAHYNRNAKQLWS--DAHKKGIKSEVIC 96
Query: 742 TPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNA 801
I L+ + L+ + V Y A++ G + +++ L
Sbjct: 97 FVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIM 156
Query: 802 T 802
Sbjct: 157 A 157
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 147 bits (375), Expect = 9e-42
Identities = 38/126 (30%), Positives = 56/126 (44%), Gaps = 2/126 (1%)
Query: 425 RGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGAS 484
+ L AA Q + VR LL GA +A R + P+ V G+ +A LLL HGA
Sbjct: 11 SSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAE 69
Query: 485 VDAPTKDGYT-ALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQM 543
+ T +H +A+EG + +L +GA + G P+ LA + G IA+
Sbjct: 70 PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARY 129
Query: 544 LLQKDA 549
L
Sbjct: 130 LHAATG 135
Score = 144 bits (367), Expect = 1e-40
Identities = 35/135 (25%), Positives = 49/135 (36%), Gaps = 2/135 (1%)
Query: 85 GATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMV 144
I++ + L AA VR LL G + P+ V G +
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVA 60
Query: 145 ELLISKGANIEAKTRDGLT-PLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQ 203
ELL+ GA LT P+H AAR G + + +L GA L G P+ +A +
Sbjct: 61 ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEE 120
Query: 204 GDHEAATRVLIYHGA 218
H R L
Sbjct: 121 QGHRDIARYLHAATG 135
Score = 142 bits (362), Expect = 6e-40
Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 2/135 (1%)
Query: 565 GASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVA 624
I L AA G+++ + LL+ A ++ + G P+ V VA
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVA 60
Query: 625 LLLLDRGASPHAVAKNGYT-PLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQ 683
LLL GA P+ T P+H AA++ +D L A+ + G P+ L+ +
Sbjct: 61 ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEE 120
Query: 684 EGHTDMSSLLIEHGA 698
+GH D++ L
Sbjct: 121 QGHRDIARYLHAATG 135
Score = 141 bits (358), Expect = 2e-39
Identities = 33/162 (20%), Positives = 55/162 (33%), Gaps = 28/162 (17%)
Query: 356 AGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSS 415
+ L AA Q + VR LL GA +A R + P+ V
Sbjct: 1 GSPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM------ 54
Query: 416 ASQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQT-PLHVASRLGNGDI 474
+ +LL +GA + T P+H A+R G D
Sbjct: 55 ---------------------GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDT 93
Query: 475 ASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGA 516
+L + GA +D G + ++ ++G ++A L +
Sbjct: 94 LVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135
Score = 139 bits (353), Expect = 8e-39
Identities = 30/144 (20%), Positives = 49/144 (34%), Gaps = 10/144 (6%)
Query: 151 GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAAT 210
I L AA G + L+E GA + + G P+ + G
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMG-SAQVA 60
Query: 211 RVLIYHGAGVDEITVDYLT-ALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACK 269
+L+ HGA + LT +H A+ G + L A + G P+ +A +
Sbjct: 61 ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEE 120
Query: 270 KNRYKSSHCNHVWVAKTLLDRKAD 293
+ H +A+ L D
Sbjct: 121 Q--------GHRDIARYLHAATGD 136
Score = 139 bits (353), Expect = 9e-39
Identities = 36/143 (25%), Positives = 56/143 (39%), Gaps = 10/143 (6%)
Query: 217 GAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSS 276
G+ + L A+ G V + LL+ ADPNA G P+ +
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM------- 54
Query: 277 HCNHVWVAKTLLDRKADPNARALNGFT-PLHIACKKNRYKVVELLLKYGASIAATTESGL 335
VA+ LL A+PN T P+H A ++ + +L + GA + G
Sbjct: 55 --GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGR 112
Query: 336 TPLHVASFMGCMNIAIFLLQAGA 358
P+ +A G +IA +L A
Sbjct: 113 LPVDLAEEQGHRDIARYLHAATG 135
Score = 136 bits (346), Expect = 7e-38
Identities = 38/167 (22%), Positives = 59/167 (35%), Gaps = 33/167 (19%)
Query: 631 GASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMS 690
H + + L AA + Q++ LLE A PNA ++ G P+ + G ++
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVA 60
Query: 691 SLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHF 750
LL+ HGA + LT P+H A+
Sbjct: 61 ELLLLHGAEPNCADPATLT--------------------------------RPVHDAARE 88
Query: 751 GQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGA 797
G L+ + L GA ++ G P+ A +QG I L A
Sbjct: 89 GFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135
Score = 135 bits (343), Expect = 2e-37
Identities = 38/142 (26%), Positives = 55/142 (38%), Gaps = 10/142 (7%)
Query: 251 ADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACK 310
+ + L A + V + LL+ ADPNA G P+ +
Sbjct: 3 PGIHMLGGSSDAGLATAAARG--------QVETVRQLLEAGADPNALNRFGRRPIQVMMM 54
Query: 311 KNRYKVVELLLKYGASIAATTESGLT-PLHVASFMGCMNIAIFLLQAGAAPDTATVRGET 369
+V ELLL +GA + LT P+H A+ G ++ + L +AGA D G
Sbjct: 55 -GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRL 113
Query: 370 PLHLAARANQTDIVRILLRNGA 391
P+ LA DI R L
Sbjct: 114 PVDLAEEQGHRDIARYLHAATG 135
Score = 133 bits (338), Expect = 1e-36
Identities = 32/130 (24%), Positives = 48/130 (36%), Gaps = 2/130 (1%)
Query: 124 ATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEK 183
+ L A G+V V L+ GA+ A R G P+ G V ++L+
Sbjct: 8 LGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLH 66
Query: 184 GAALYSKTKNGL-APLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRV 242
GA L P+H A++ VL GA +D + +A GH +
Sbjct: 67 GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDI 126
Query: 243 AKTLLDRKAD 252
A+ L D
Sbjct: 127 ARYLHAATGD 136
Score = 133 bits (337), Expect = 1e-36
Identities = 33/152 (21%), Positives = 54/152 (35%), Gaps = 19/152 (12%)
Query: 482 GASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIA 541
+ L +A GQ E L E+GA A + G P+ + G ++A
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVA 60
Query: 542 QMLLQKDAPVDSQGKVASILTESGASITATTKKGFT-PLHLAAKYGRMKIAQMLLQKDAP 600
++LL GA T P+H AA+ G + +L + A
Sbjct: 61 ELLLLH-----------------GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGAR 103
Query: 601 VDSQGKNGVTPLHVASHYDHQNVALLLLDRGA 632
+D G P+ +A H+++A L
Sbjct: 104 LDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135
Score = 132 bits (336), Expect = 2e-36
Identities = 36/168 (21%), Positives = 58/168 (34%), Gaps = 35/168 (20%)
Query: 599 APVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIAT 658
+ G + L A+ LL+ GA P+A+ + G P+ + +A
Sbjct: 3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAE 61
Query: 659 TLLEYNAKPNAESKAGFT-PLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQE 717
LL + A+PN A T P+H +A+EG D +L GA
Sbjct: 62 LLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGA------------------- 102
Query: 718 DKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGAN 765
+D G P+ +A G ++ RYL +
Sbjct: 103 --------------RLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136
Score = 130 bits (330), Expect = 1e-35
Identities = 36/160 (22%), Positives = 54/160 (33%), Gaps = 26/160 (16%)
Query: 324 GASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIV 383
I S L A+ G + LL+AGA P+ G P+ + +
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVA 60
Query: 384 RILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVR 443
+LL +GA + T P+H AAR D +
Sbjct: 61 ELLLLHGAEPNCADPATLT-------------------------RPVHDAAREGFLDTLV 95
Query: 444 ILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGA 483
+L R GA +D + P+ +A G+ DIA L
Sbjct: 96 VLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135
Score = 130 bits (329), Expect = 2e-35
Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 2/114 (1%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNIT-P 131
GQ E + L++ GA N + G P+ + V LL G A +T P
Sbjct: 23 GQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRP 81
Query: 132 LHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGA 185
+H A + G + + +L GA ++ G P+ A GH ++ L
Sbjct: 82 VHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135
Score = 103 bits (260), Expect = 3e-26
Identities = 23/142 (16%), Positives = 45/142 (31%), Gaps = 35/142 (24%)
Query: 664 NAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVA 723
+ + + L +A G + L+E GA + + G P+ +
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM------- 54
Query: 724 TITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYT-PLHQASQ 782
G + L+ +GA N T P+H A++
Sbjct: 55 ---------------------------GSAQVAELLLLHGAEPNCADPATLTRPVHDAAR 87
Query: 783 QGRVLIIDLLLGAGAQPNATTN 804
+G + + +L AGA+ +
Sbjct: 88 EGFLDTLVVLHRAGARLDVCDA 109
Score = 91.3 bits (228), Expect = 7e-22
Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Query: 71 ATGQEEVAKILVDNGATINVQSLNGFT-PLYMAAQENHDGVVRYLLSKGGNQTLATEHNI 129
G +VA++L+ +GA N T P++ AA+E + L G +
Sbjct: 53 MMGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGR 112
Query: 130 TPLHVACKWGKVAMVELLISKGAN 153
P+ +A + G + L + +
Sbjct: 113 LPVDLAEEQGHRDIARYLHAATGD 136
Score = 64.8 bits (159), Expect = 1e-12
Identities = 21/125 (16%), Positives = 38/125 (30%), Gaps = 49/125 (39%)
Query: 3 QGHDRVVAVLLEN-------DTKGKVKLPALHIAAKKDDCKAAALLLEVSFSNTKLEVSL 55
G +V +LL + D +H AA++
Sbjct: 54 MGSAQVAELLLLHGAEPNCADPATLT--RPVHDAARE----------------------- 88
Query: 56 SNTKLEVSLSNTKFEATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLL 115
G + +L GA ++V G P+ +A ++ H + RYL
Sbjct: 89 -----------------GFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLH 131
Query: 116 SKGGN 120
+ G+
Sbjct: 132 AATGD 136
Score = 55.9 bits (136), Expect = 2e-09
Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 12/74 (16%)
Query: 763 GANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTN-----LFCCA-------T 810
++ L A+ +G+V + LL AGA PNA +
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSAQVAE 61
Query: 811 ILVKNGAEIDPVTK 824
+L+ +GAE +
Sbjct: 62 LLLLHGAEPNCADP 75
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 147 bits (375), Expect = 1e-41
Identities = 41/134 (30%), Positives = 61/134 (45%), Gaps = 1/134 (0%)
Query: 565 GASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVA 624
G T +G T LH+A+ G + + LLQ + + + G TPLH A ++ H V
Sbjct: 1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV 59
Query: 625 LLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQE 684
LLL A + +PLH AAK +DI LL Y A NA + G P+ + E
Sbjct: 60 ELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDE 119
Query: 685 GHTDMSSLLIEHGA 698
+ L ++ +
Sbjct: 120 SMKSLLLLPEKNES 133
Score = 146 bits (370), Expect = 5e-41
Identities = 38/129 (29%), Positives = 58/129 (44%)
Query: 425 RGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGAS 484
RGET LH+A+ V LL+NG+ + + TPLH A G+ + LLLQH A
Sbjct: 9 RGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL 68
Query: 485 VDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
V+ + LH +AK G ++ +L GAS A G P+ + +
Sbjct: 69 VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLP 128
Query: 545 LQKDAPVDS 553
+ ++ S
Sbjct: 129 EKNESSSAS 137
Score = 140 bits (356), Expect = 4e-39
Identities = 45/155 (29%), Positives = 69/155 (44%), Gaps = 19/155 (12%)
Query: 515 GASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKK 574
G T +G T LH+A+ G + + LLQ G+
Sbjct: 1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQN-----------------GSDPNVKDHA 42
Query: 575 GFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASP 634
G+TPLH A +G +K+ ++LLQ A V++ G +PLH A+ H ++ LLL GAS
Sbjct: 43 GWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASR 102
Query: 635 HAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNA 669
+AV G P+ ++ + L E N +A
Sbjct: 103 NAVNIFGLRPVDYTDDESMKSLL-LLPEKNESSSA 136
Score = 139 bits (354), Expect = 8e-39
Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 1/134 (0%)
Query: 85 GATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMV 144
G G T L++A+ + V YLL G + + TPLH AC G + +V
Sbjct: 1 GIDPFTNH-RGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV 59
Query: 145 ELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQG 204
ELL+ A + +PLH AA++GH +++ +L+ GA+ + GL P+
Sbjct: 60 ELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDE 119
Query: 205 DHEAATRVLIYHGA 218
++ + + +
Sbjct: 120 SMKSLLLLPEKNES 133
Score = 139 bits (353), Expect = 9e-39
Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 9/142 (6%)
Query: 251 ADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACK 310
DP G T LHIA K + + LL +DPN + G+TPLH AC
Sbjct: 2 IDPFTNH-RGETLLHIASIKG--------DIPSVEYLLQNGSDPNVKDHAGWTPLHEACN 52
Query: 311 KNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETP 370
KVVELLL++ A + T +PLH A+ G ++I LL GA+ + + G P
Sbjct: 53 HGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRP 112
Query: 371 LHLAARANQTDIVRILLRNGAS 392
+ + ++ + +N +S
Sbjct: 113 VDYTDDESMKSLLLLPEKNESS 134
Score = 137 bits (347), Expect = 7e-38
Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 1/126 (0%)
Query: 130 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 189
T LH+A G + VE L+ G++ K G TPLH A GH V+++L++ A + +
Sbjct: 12 TLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNT 71
Query: 190 KTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDR 249
+PLH A++ H ++L+ +GA + + + L + + L ++
Sbjct: 72 TGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLL-LPEK 130
Query: 250 KADPNA 255
+A
Sbjct: 131 NESSSA 136
Score = 136 bits (345), Expect = 1e-37
Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 8/140 (5%)
Query: 190 KTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDR 249
G LH+AS + L+ +G+ + T LH A + GH++V + LL
Sbjct: 6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH 65
Query: 250 KADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIAC 309
KA N +PLH A + HV + K LL A NA + G P+
Sbjct: 66 KALVNTTGYQNDSPLHDA--------AKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTD 117
Query: 310 KKNRYKVVELLLKYGASIAA 329
++ ++ L K +S A+
Sbjct: 118 DESMKSLLLLPEKNESSSAS 137
Score = 135 bits (342), Expect = 3e-37
Identities = 39/164 (23%), Positives = 65/164 (39%), Gaps = 34/164 (20%)
Query: 639 KNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGA 698
G T LHIA+ K + LL+ + PN + AG+TPLH + GH + LL++H A
Sbjct: 8 HRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKA 67
Query: 699 TVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRY 758
V+ +PLH A+ G +++V+
Sbjct: 68 LVNTTGYQ---------------------------------NDSPLHDAAKNGHVDIVKL 94
Query: 759 LVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNAT 802
L+ GA+ NA G P+ + ++ L + +A+
Sbjct: 95 LLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES-SSAS 137
Score = 135 bits (342), Expect = 3e-37
Identities = 38/152 (25%), Positives = 64/152 (42%), Gaps = 18/152 (11%)
Query: 482 GASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIA 541
G G T LHI++ +G L ++G+ G+TPLH A +G +K+
Sbjct: 1 GIDPFT-NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV 59
Query: 542 QMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPV 601
++LLQ A + T + +PLH AAK G + I ++LL A
Sbjct: 60 ELLLQH-----------------KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASR 102
Query: 602 DSQGKNGVTPLHVASHYDHQNVALLLLDRGAS 633
++ G+ P+ +++ LL +S
Sbjct: 103 NAVNIFGLRPVDYTDDESMKSLLLLPEKNESS 134
Score = 134 bits (339), Expect = 7e-37
Identities = 36/144 (25%), Positives = 59/144 (40%), Gaps = 17/144 (11%)
Query: 460 QTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASIT 519
+T LH+AS G+ LLQ+G+ + G+T LH + G +V +L + A +
Sbjct: 11 ETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVN 70
Query: 520 ATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPL 579
T + +PLH AAK G + I ++LL GAS A G P+
Sbjct: 71 TTGYQNDSPLHDAAKNGHVDIVKLLLSY-----------------GASRNAVNIFGLRPV 113
Query: 580 HLAAKYGRMKIAQMLLQKDAPVDS 603
+ + + ++ S
Sbjct: 114 DYTDDESMKSLLLLPEKNESSSAS 137
Score = 133 bits (337), Expect = 1e-36
Identities = 34/113 (30%), Positives = 52/113 (46%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
G + L+ NG+ NV+ G+TPL+ A H VV LL N +PL
Sbjct: 21 GDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPL 80
Query: 133 HVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGA 185
H A K G V +V+LL+S GA+ A GL P+ +++ + + +
Sbjct: 81 HDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES 133
Score = 132 bits (335), Expect = 3e-36
Identities = 36/126 (28%), Positives = 57/126 (45%)
Query: 606 KNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNA 665
G T LH+AS LL G+ P+ G+TPLH A + + LL++ A
Sbjct: 8 HRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKA 67
Query: 666 KPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATI 725
N +PLH +A+ GH D+ LL+ +GA+ + GL P+ E ++ +
Sbjct: 68 LVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLL 127
Query: 726 TMFNGA 731
N +
Sbjct: 128 PEKNES 133
Score = 129 bits (328), Expect = 2e-35
Identities = 44/160 (27%), Positives = 64/160 (40%), Gaps = 27/160 (16%)
Query: 292 ADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAI 351
DP G T LHIA K VE LL+ G+ +G TPLH A G + +
Sbjct: 2 IDPFTNH-RGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVE 60
Query: 352 FLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLR 411
LLQ A +T + ++PLH AA+ DIV++LL GAS +A
Sbjct: 61 LLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIF------------ 108
Query: 412 RFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGAS 451
G P+ + ++ + +N +S
Sbjct: 109 --------------GLRPVDYTDDESMKSLLLLPEKNESS 134
Score = 105 bits (265), Expect = 6e-27
Identities = 35/100 (35%), Positives = 53/100 (53%)
Query: 705 KNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGA 764
G T LH+ + + + + NG++ + AG+TPLH A + G L +V L+++ A
Sbjct: 8 HRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKA 67
Query: 765 NVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTN 804
VN T +PLH A++ G V I+ LLL GA NA
Sbjct: 68 LVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNI 107
Score = 93.6 bits (234), Expect = 1e-22
Identities = 17/81 (20%), Positives = 37/81 (45%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
G +V ++L+ + A +N +PL+ AA+ H +V+ LLS G ++ + P+
Sbjct: 54 GHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPV 113
Query: 133 HVACKWGKVAMVELLISKGAN 153
+++ L ++
Sbjct: 114 DYTDDESMKSLLLLPEKNESS 134
Score = 56.3 bits (137), Expect = 1e-09
Identities = 22/125 (17%), Positives = 39/125 (31%), Gaps = 44/125 (35%)
Query: 2 QQGHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCKAAALLLEVSFSNTKLEVSLSN 57
GH +VV +LL++ +T G LH AAK
Sbjct: 52 NHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKN------------------------- 86
Query: 58 TKLEVSLSNTKFEATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSK 117
G ++ K+L+ GA+ N ++ G P+ E+ ++
Sbjct: 87 ---------------GHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKN 131
Query: 118 GGNQT 122
+
Sbjct: 132 ESSSA 136
Score = 46.6 bits (112), Expect = 3e-06
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 14/71 (19%)
Query: 763 GANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTN-----LFC--------CA 809
G + T + G T LH AS +G + ++ LL G+ PN + L
Sbjct: 1 GIDPF-TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV 59
Query: 810 TILVKNGAEID 820
+L+++ A ++
Sbjct: 60 ELLLQHKALVN 70
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 147 bits (372), Expect = 8e-40
Identities = 57/284 (20%), Positives = 84/284 (29%), Gaps = 72/284 (25%)
Query: 303 TPLHIACKKNRYK----VVELLLKYGASI----AATTESGLTPLHVASFM---GCMNIAI 351
L + ++ LL + + +G T L A G +
Sbjct: 7 PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66
Query: 352 FLLQAGAAPDTATV-----------RGETPLHLAARANQTDIVRILLRNGASVDARARED 400
LL RG+T LH+A V +L+ GA V A+AR
Sbjct: 67 ILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGR 126
Query: 401 QTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNG---ASVDARAR 457
F GE PL LAA NQ IV L NG A + +
Sbjct: 127 FFQPKDEGGYFYF------------GELPLSLAACTNQPHIVHYLTENGHKQADLRRQDS 174
Query: 458 EDQTPLHVASRLGNG---------DIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVA 508
T LH + + + LLL A + T
Sbjct: 175 RGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLE---------------- 218
Query: 509 SILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVD 552
G +PL +AAK G++ I Q +++++
Sbjct: 219 ----------ALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADA 252
Score = 138 bits (350), Expect = 7e-37
Identities = 49/252 (19%), Positives = 80/252 (31%), Gaps = 44/252 (17%)
Query: 459 DQTPLHVASRLGNG----DIASLLLQHGASVDA----PTKDGYTALHISA---KEGQDEV 507
++ L G+ + S LL H + G T L + G+++
Sbjct: 5 NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64
Query: 508 ASILTESG-----------ASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGK 556
IL + + +G T LH+A + ++L++K A V +Q
Sbjct: 65 IPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQ-- 122
Query: 557 VASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQK---DAPVDSQGKNGVTPLH 613
A G PL LAA + I L + A + Q G T LH
Sbjct: 123 -ARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLH 181
Query: 614 VASHYDHQN---------VALLLLDRGASPHAVA-------KNGYTPLHIAAKKNQMDIA 657
+ LLL + A +G +PL +AAK ++ I
Sbjct: 182 ALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIF 241
Query: 658 TTLLEYNAKPNA 669
++ A
Sbjct: 242 QHIIRREIADAA 253
Score = 135 bits (342), Expect = 8e-36
Identities = 40/267 (14%), Positives = 83/267 (31%), Gaps = 52/267 (19%)
Query: 97 TPLYMAAQEN----HDGVVRYLLSKGGN----QTLATEHNITPLHVA---CKWGKVAMVE 145
L+ +G++ +LL+ + T L A G+ +
Sbjct: 7 PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66
Query: 146 LLISKG-----------ANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNG 194
+L+ + G T LH A + +++L+EKGA ++++ +
Sbjct: 67 ILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGR 126
Query: 195 LAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDR---KA 251
Y G L +A+ + L + +A
Sbjct: 127 FFQPKDEGGYF---------YFGE----------LPLSLAACTNQPHIVHYLTENGHKQA 167
Query: 252 DPNARALNGFTPLHIACK-KNRYKSSHCNHVWVAKTLLDRKADPNARAL-------NGFT 303
D + G T LH + + + + LL + A +G +
Sbjct: 168 DLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLS 227
Query: 304 PLHIACKKNRYKVVELLLKYGASIAAT 330
PL +A K + + + +++ + AA
Sbjct: 228 PLMMAAKTGKIGIFQHIIRREIADAAA 254
Score = 134 bits (339), Expect = 2e-35
Identities = 53/291 (18%), Positives = 76/291 (26%), Gaps = 66/291 (22%)
Query: 228 LTALHVASHCGHVRVAKTLLDRKADPNA----RALNGFTPLHIACKKNRYKSSHCNHVWV 283
+ S G + LL K G T L A
Sbjct: 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSA-----GRNDT 64
Query: 284 AKTLLDRKADP-----------NARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTE 332
LLD G T LHIA ++ VELL++ GA + A
Sbjct: 65 IPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQAR 124
Query: 333 SGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNG-- 390
GE PL LAA NQ IV L NG
Sbjct: 125 GRFFQPK-------------------DEGGYFYFGELPLSLAACTNQPHIVHYLTENGHK 165
Query: 391 -ASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNG 449
A + + T LH + T + +LL
Sbjct: 166 QADLRRQDSRGNTVLHALVAIAD-----------------NTRENTKFVTKMYDLLLIKC 208
Query: 450 ASVDARARED-------QTPLHVASRLGNGDIASLLLQHGASVDAPTKDGY 493
A + + +PL +A++ G I +++ + A +
Sbjct: 209 AKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHHHHH 259
Score = 133 bits (336), Expect = 5e-35
Identities = 55/287 (19%), Positives = 83/287 (28%), Gaps = 83/287 (28%)
Query: 527 TPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKK----GFTPLHLA 582
L G + LL L +T + G T L A
Sbjct: 7 PILFDIVSRGSPDGLEGLLS-------------FLLTHKKRLTDEEFREPSTGKTCLPKA 53
Query: 583 A---KYGRMKIAQMLLQK-----------DAPVDSQGKNGVTPLHVASHYDHQNVALLLL 628
GR +LL ++P G T LH+A ++ LL+
Sbjct: 54 LLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLV 113
Query: 629 DRGASPHAVAKN--------------GYTPLHIAAKKNQMDIATTLLE---YNAKPNAES 671
++GA HA A+ G PL +AA NQ I L E A +
Sbjct: 114 EKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQD 173
Query: 672 KAGFTPLHLSAQEGH---------TDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNV 722
G T LH T M LL+ A + E +N
Sbjct: 174 SRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNL----------EALLN- 222
Query: 723 ATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNAT 769
G +PL +A+ G++ + ++++ A
Sbjct: 223 ---------------NDGLSPLMMAAKTGKIGIFQHIIRREIADAAA 254
Score = 122 bits (309), Expect = 2e-31
Identities = 46/236 (19%), Positives = 76/236 (32%), Gaps = 52/236 (22%)
Query: 73 GQEEVAKILVDNGATIN----VQSLNGFTPLYMAA---QENHDGVVRYLLSKGGNQTLAT 125
G E + L+ + + + G T L A + + LL
Sbjct: 20 GLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMR 79
Query: 126 EHNI-----------TPLHVACKWGKVAMVELLISKGANIEAKTR--------------D 160
E T LH+A + VELL+ KGA++ A+ R
Sbjct: 80 EFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYF 139
Query: 161 GLTPLHCAARSGHDNVIDILIEKG---AALYSKTKNGLAPLHMASQGDHE---------A 208
G PL AA + +++ L E G A L + G LH
Sbjct: 140 GELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTK 199
Query: 209 ATRVLIYHGAGVDEITVDY-------LTALHVASHCGHVRVAKTLLDRKA-DPNAR 256
+L+ A + T L+ L +A+ G + + + ++ R+ D A
Sbjct: 200 MYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAH 255
Score = 114 bits (287), Expect = 2e-28
Identities = 48/230 (20%), Positives = 68/230 (29%), Gaps = 53/230 (23%)
Query: 610 TPLHVASHY----DHQNVALLLLDRGASPHAV----AKNGYTPLHIAA---KKNQMDIAT 658
L + + LL G T L A + D
Sbjct: 7 PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66
Query: 659 TLLEY-----------NAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNG 707
LL+ N+ G T LH++ + LL+E GA V QA+
Sbjct: 67 ILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGR 126
Query: 708 LTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENG---A 764
F + G PL +A+ Q ++V YL ENG A
Sbjct: 127 F-------------------FQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQA 167
Query: 765 NVNATTNLGYTPLHQASQQG---------RVLIIDLLLGAGAQPNATTNL 805
++ + G T LH + DLLL A+ TNL
Sbjct: 168 DLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNL 217
Score = 80.2 bits (198), Expect = 8e-17
Identities = 39/215 (18%), Positives = 61/215 (28%), Gaps = 56/215 (26%)
Query: 4 GHDRVVAVLLENDTKGKVKLP---------------ALHIAAKKDDCKAAALLLE----V 44
G + + +LL+ K ALHIA ++ LL+E V
Sbjct: 60 GRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV 119
Query: 45 SFSNTKLEVSLSNTKLEVSLSNTKF---EATGQEEVAKILVDNG---ATINVQSLNGFTP 98
+ T Q + L +NG A + Q G T
Sbjct: 120 HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTV 179
Query: 99 LYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKT 158
L+ + M +LL+ K A + T
Sbjct: 180 LHALVAIADN------------------------TRENTKFVTKMYDLLLIKCAKLFPDT 215
Query: 159 -------RDGLTPLHCAARSGHDNVIDILIEKGAA 186
DGL+PL AA++G + +I + A
Sbjct: 216 NLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIA 250
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 140 bits (356), Expect = 2e-39
Identities = 42/115 (36%), Positives = 68/115 (59%), Gaps = 2/115 (1%)
Query: 85 GATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMV 144
G S +G TPL+ AA+ H V+ LLSKG + ++ TPLH+A K G +V
Sbjct: 1 GHMWG--SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIV 58
Query: 145 ELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLH 199
+LL++KGA++ A+++DG TP H A ++GH ++ +L KGA + +++ H
Sbjct: 59 KLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113
Score = 126 bits (320), Expect = 1e-34
Identities = 43/107 (40%), Positives = 58/107 (54%)
Query: 606 KNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNA 665
K+G TPLH A+ H LL +GA +A +K+G TPLH+AAK +I LL A
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 666 KPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLH 712
NA SK G TP HL+ + GH ++ LL GA V+ ++ H
Sbjct: 67 DVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113
Score = 125 bits (318), Expect = 3e-34
Identities = 41/115 (35%), Positives = 63/115 (54%), Gaps = 2/115 (1%)
Query: 151 GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAAT 210
G +K DG TPLH AA++GH + L+ KGA + +++K+G PLH+A++ H
Sbjct: 1 GHMWGSK--DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIV 58
Query: 211 RVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLH 265
++L+ GA V+ + D T H+A GH + K L + AD NAR+ H
Sbjct: 59 KLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113
Score = 124 bits (315), Expect = 7e-34
Identities = 42/105 (40%), Positives = 62/105 (59%)
Query: 426 GETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASV 485
G TPLH AA+ + V+ LL GA V+AR+++ TPLH+A++ G+ +I LLL GA V
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV 68
Query: 486 DAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLH 530
+A +KDG T H++ K G E+ +L GA + A + H
Sbjct: 69 NARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113
Score = 123 bits (312), Expect = 2e-33
Identities = 44/115 (38%), Positives = 60/115 (52%), Gaps = 2/115 (1%)
Query: 565 GASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVA 624
G +K G TPLH AAK G + + LL K A V+++ K+G TPLH+A+ H +
Sbjct: 1 GHMWG--SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIV 58
Query: 625 LLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLH 679
LLL +GA +A +K+G TP H+A K +I L A NA S H
Sbjct: 59 KLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113
Score = 122 bits (308), Expect = 6e-33
Identities = 39/112 (34%), Positives = 60/112 (53%)
Query: 668 NAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITM 727
SK G TPLH +A+ GH + L+ GA V+ ++K+G TPLHL A+ + + +
Sbjct: 3 MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL 62
Query: 728 FNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQ 779
GA+++ +K G TP H+A G +V+ L GA+VNA + H
Sbjct: 63 AKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHHH 114
Score = 121 bits (307), Expect = 7e-33
Identities = 39/110 (35%), Positives = 65/110 (59%)
Query: 123 LATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIE 182
++ TPLH A K G V+ L+SKGA++ A+++DG TPLH AA++GH ++ +L+
Sbjct: 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLA 63
Query: 183 KGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALH 232
KGA + +++K+G P H+A + H ++L GA V+ + H
Sbjct: 64 KGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113
Score = 116 bits (294), Expect = 4e-31
Identities = 47/132 (35%), Positives = 64/132 (48%), Gaps = 19/132 (14%)
Query: 515 GASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKK 574
G +K G TPLH AAK G + + LL K GA + A +K
Sbjct: 1 GHMWG--SKDGNTPLHNAAKNGHAEEVKKLLSK-----------------GADVNARSKD 41
Query: 575 GFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASP 634
G TPLHLAAK G +I ++LL K A V+++ K+G TP H+A H + LL +GA
Sbjct: 42 GNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADV 101
Query: 635 HAVAKNGYTPLH 646
+A + H
Sbjct: 102 NARSWGSSHHHH 113
Score = 116 bits (294), Expect = 4e-31
Identities = 40/106 (37%), Positives = 56/106 (52%)
Query: 300 NGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAA 359
+G TPLH A K + V+ LL GA + A ++ G TPLH+A+ G I LL GA
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 360 PDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLH 405
+ + G TP HLA + +IV++L GA V+AR+ H
Sbjct: 68 VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113
Score = 116 bits (294), Expect = 4e-31
Identities = 48/132 (36%), Positives = 63/132 (47%), Gaps = 19/132 (14%)
Query: 482 GASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIA 541
G +KDG T LH +AK G E L GA + A +K G TPLHLAAK G +I
Sbjct: 1 GHMWG--SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIV 58
Query: 542 QMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPV 601
++LL K GA + A +K G TP HLA K G +I ++L K A V
Sbjct: 59 KLLLAK-----------------GADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADV 101
Query: 602 DSQGKNGVTPLH 613
+++ H
Sbjct: 102 NARSWGSSHHHH 113
Score = 114 bits (289), Expect = 2e-30
Identities = 34/94 (36%), Positives = 55/94 (58%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
G E K L+ GA +N +S +G TPL++AA+ H +V+ LL+KG + ++ TP
Sbjct: 20 GHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPE 79
Query: 133 HVACKWGKVAMVELLISKGANIEAKTRDGLTPLH 166
H+A K G +V+LL +KGA++ A++ H
Sbjct: 80 HLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113
Score = 114 bits (288), Expect = 3e-30
Identities = 40/114 (35%), Positives = 55/114 (48%), Gaps = 8/114 (7%)
Query: 259 NGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVE 318
+G TPLH A + H K LL + AD NAR+ +G TPLH+A K ++V+
Sbjct: 8 DGNTPLHNA--------AKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVK 59
Query: 319 LLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLH 372
LLL GA + A ++ G TP H+A G I L GA + + H
Sbjct: 60 LLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113
Score = 112 bits (282), Expect = 2e-29
Identities = 42/121 (34%), Positives = 59/121 (48%), Gaps = 17/121 (14%)
Query: 460 QTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASIT 519
TPLH A++ G+ + LL GA V+A +KDG T LH++AK G E+ +L GA +
Sbjct: 10 NTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN 69
Query: 520 ATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPL 579
A +K G TP HLA K G +I ++L K GA + A +
Sbjct: 70 ARSKDGNTPEHLAKKNGHHEIVKLLDAK-----------------GADVNARSWGSSHHH 112
Query: 580 H 580
H
Sbjct: 113 H 113
Score = 104 bits (262), Expect = 1e-26
Identities = 44/141 (31%), Positives = 63/141 (44%), Gaps = 28/141 (19%)
Query: 324 GASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIV 383
G ++ G TPLH A+ G LL GA + + G TPLHLAA+ +IV
Sbjct: 1 GHMWG--SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIV 58
Query: 384 RILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVR 443
++LL GA V+AR+++ G TP HLA + +IV+
Sbjct: 59 KLLLAKGADVNARSKD--------------------------GNTPEHLAKKNGHHEIVK 92
Query: 444 ILLRNGASVDARAREDQTPLH 464
+L GA V+AR+ H
Sbjct: 93 LLDAKGADVNARSWGSSHHHH 113
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 147 bits (372), Expect = 3e-39
Identities = 46/288 (15%), Positives = 85/288 (29%), Gaps = 31/288 (10%)
Query: 414 SSASQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGD 473
S +++ E L ++ L + ++ ++ S
Sbjct: 51 SPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQ 110
Query: 474 -IASLLLQHGASVDAPT-KDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHL 531
+ +++ P + G T LH E+ L + G++ G + L
Sbjct: 111 EVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVK 170
Query: 532 AAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMK-- 589
A K G ++L + T LH M
Sbjct: 171 AVKSVNNY-------------DSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGC 217
Query: 590 ----------IAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVA- 638
+ +++K G N + + ++ L LD +
Sbjct: 218 SAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLN 277
Query: 639 ---KNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQ 683
NG T L+IAA+ + I LL+Y A P +K+G P+ A
Sbjct: 278 AQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAG 325
Score = 140 bits (355), Expect = 6e-37
Identities = 51/325 (15%), Positives = 96/325 (29%), Gaps = 18/325 (5%)
Query: 31 KKDDCKAAALLLEVSFSNTKLEVSLSNTKLEVSLSNTKFEATGQEEVAKILVDNGATINV 90
+ + + N + + + T + ++ K L N
Sbjct: 3 DINKGPSGDNENNGTDDNDRTAGPIITF----THDLTSDFLSSPLKIMKALPSPVVNDNE 58
Query: 91 QSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL-HVACKWGKVAMVELLIS 149
Q + L + L + N+ + HV+ + + +
Sbjct: 59 QKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPN 118
Query: 150 KGANIEAKT-RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDH-- 206
N+ G TPLH + ++ L++ G+ G + L A + +
Sbjct: 119 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNY 178
Query: 207 --EAATRVLIYHGAGVDEITVDYLTALH----VASHCGHVRVAK----TLLDRKADPNAR 256
+L Y + T LH + G AK L+ R
Sbjct: 179 DSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNR 238
Query: 257 ALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKV 316
+ T + ++ + + NA+ NG T L+IA + +
Sbjct: 239 PIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISI 298
Query: 317 VELLLKYGASIAATTESGLTPLHVA 341
V+ LL YGA +SGL P+
Sbjct: 299 VDALLDYGADPFIANKSGLRPVDFG 323
Score = 140 bits (353), Expect = 1e-36
Identities = 39/302 (12%), Positives = 88/302 (29%), Gaps = 39/302 (12%)
Query: 357 GAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSA 416
+ ++ E L ++ L + ++ ++
Sbjct: 53 VVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQ----------- 101
Query: 417 SQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARARED-QTPLHVASRLGNGDIA 475
H++ + ++ +++ E TPLH + + N ++
Sbjct: 102 --------------HVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELV 147
Query: 476 SLLLQHGASVDAPTKDGYTALHISAKEG----QDEVASILTESGASITATTKKGFTPLHL 531
L++HG++ G + L + K ++L + T LH
Sbjct: 148 KHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHH 207
Query: 532 AAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGR---- 587
M A + + + + R
Sbjct: 208 IIITSGMT-----GCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSI 262
Query: 588 MKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHI 647
++ + +++Q NG T L++A+ + ++ LLD GA P K+G P+
Sbjct: 263 LENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDF 322
Query: 648 AA 649
A
Sbjct: 323 GA 324
Score = 136 bits (344), Expect = 1e-35
Identities = 41/353 (11%), Positives = 94/353 (26%), Gaps = 73/353 (20%)
Query: 436 ANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTA 495
++ I++ L + + + + + L ++ + L ++ ++
Sbjct: 40 SSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQ 99
Query: 496 L-HISAKEGQDEVASILTESGASITATT-KKGFTPLHLAAKYGRMKIAQMLLQKDAPVDS 553
H+S EV + ++ + G TPLH +++ + L++
Sbjct: 100 QQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKH------ 153
Query: 554 QGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLH 613
G++ G + L A K
Sbjct: 154 -----------GSNRLYGDNMGESCLVKAVKSVN-------------------------- 176
Query: 614 VASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKA 673
+YD LL T LH + M + +Y
Sbjct: 177 ---NYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMG--- 230
Query: 674 GFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITM----FN 729
+++ N ++ + +
Sbjct: 231 ------------------WIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWII 272
Query: 730 GAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQ 782
++ G T L+IA+ G +++V L++ GA+ G P+ +
Sbjct: 273 ANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAG 325
Score = 134 bits (337), Expect = 2e-34
Identities = 38/257 (14%), Positives = 82/257 (31%), Gaps = 16/257 (6%)
Query: 283 VAKTLLDRKADPNARALNGFTPLHIACKKNRYK-VVELLLKYGASI-AATTESGLTPLHV 340
+ +L + ++ N+ + + + V + ++ E G TPLH
Sbjct: 78 MPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHW 137
Query: 341 ASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARAN----QTDIVRILLRNGASVDAR 396
+ + + + L++ G+ GE+ L A ++ +L +
Sbjct: 138 LTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILE 197
Query: 397 AREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARA 456
++T LH + S +A + + + + I S
Sbjct: 198 DSMNRTILHHIIITSGMTGCSAAA--KYYLDILMGWIVKKQNRPI--------QSGTNEK 247
Query: 457 REDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGA 516
+ + + L ++A +G T L+I+A+ G + L + GA
Sbjct: 248 ESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGA 307
Query: 517 SITATTKKGFTPLHLAA 533
K G P+ A
Sbjct: 308 DPFIANKSGLRPVDFGA 324
Score = 118 bits (297), Expect = 2e-29
Identities = 40/279 (14%), Positives = 84/279 (30%), Gaps = 22/279 (7%)
Query: 548 DAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKN 607
+ S K+ L + K L ++ L + +S+G +
Sbjct: 36 SDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGS 95
Query: 608 GVTPL-HVASHYDHQNVALLLLDRGASP-HAVAKNGYTPLHIAAKKNQMDIATTLLEYNA 665
HV+ Q V + + V ++G TPLH +++ L+++ +
Sbjct: 96 SNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGS 155
Query: 666 KPNAESKAGFTPLHLSAQEGHT----DMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVN 721
G + L + + + +LL + + T LH +
Sbjct: 156 NRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMT 215
Query: 722 ------------VATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVEN----GAN 765
+ + + + + + ++
Sbjct: 216 GCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANM 275
Query: 766 VNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTN 804
+NA + G T L+ A++ G + I+D LL GA P
Sbjct: 276 LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANK 314
Score = 99.3 bits (247), Expect = 9e-23
Identities = 31/259 (11%), Positives = 61/259 (23%), Gaps = 85/259 (32%)
Query: 25 ALHIAAKKDDCKAAALLLEVSFSNTKLEVSLSNTKLEVSLSNTKFEATGQEEVAKILVDN 84
LH E+ K LV +
Sbjct: 134 PLHWLTSI----------------------------------------ANLELVKHLVKH 153
Query: 85 GATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMV 144
G+ G + L A + + +
Sbjct: 154 GSNRLYGDNMGESCLVKAVKSVN-----------------------------NYDSGTFE 184
Query: 145 ELLISKGANIEAKTRDGLTPLHCAA------------RSGHDNVIDILIEKGAALYSKTK 192
LL + + T LH + D ++ +++K
Sbjct: 185 ALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGT 244
Query: 193 NGLAPLHMASQGDHEAATRVLIYH----GAGVDEITVDYLTALHVASHCGHVRVAKTLLD 248
N G+ + + + ++ + T L++A+ G++ + LLD
Sbjct: 245 NEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLD 304
Query: 249 RKADPNARALNGFTPLHIA 267
ADP +G P+
Sbjct: 305 YGADPFIANKSGLRPVDFG 323
Score = 76.6 bits (188), Expect = 4e-15
Identities = 26/158 (16%), Positives = 52/158 (32%), Gaps = 2/158 (1%)
Query: 629 DRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTD 688
D L + + I L N + L +
Sbjct: 18 DDNDRTAGPIITFTHDLTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQE 77
Query: 689 MSSLLIEHGATVSHQAKNGLTPLHLCAQEDKV-NVATITMFNGAEID-PVTKAGFTPLHI 746
M + L + + + + + + + V ++ PV + G TPLH
Sbjct: 78 MPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHW 137
Query: 747 ASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQG 784
+ L +V++LV++G+N N+G + L +A +
Sbjct: 138 LTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSV 175
Score = 36.5 bits (84), Expect = 0.026
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQ 104
G + L+D GA + + +G P+ A
Sbjct: 294 GNISIVDALLDYGADPFIANKSGLRPVDFGAG 325
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 138 bits (350), Expect = 7e-38
Identities = 37/222 (16%), Positives = 64/222 (28%), Gaps = 40/222 (18%)
Query: 454 ARAREDQTPLHVASRLGNGDIASLLLQHGASVDAP---TKDGYTALHISAKEGQDEVASI 510
+ A + + A+ LG + L + G + Y L + E + +++
Sbjct: 1 SNAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMF 60
Query: 511 LTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITA 570
L GA I + TK+G T + G I ++ I E GA ITA
Sbjct: 61 LINKGADIKSRTKEGTTLFFPLFQGGGNDITGTT-----------ELCKIFLEKGADITA 109
Query: 571 TTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDR 630
K + + +M+ L+
Sbjct: 110 LYKPYKIVVFKNIFNYFVDENEMI--------------------------PLYKLIFSQS 143
Query: 631 GASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESK 672
G K G T L + + + +Y K N +
Sbjct: 144 GLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKEN 185
Score = 137 bits (347), Expect = 2e-37
Identities = 28/201 (13%), Positives = 56/201 (27%), Gaps = 36/201 (17%)
Query: 367 GETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRG 426
+ AA + L G + + ++ +
Sbjct: 6 EYRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILY-------------------- 43
Query: 427 ETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIAS------LLLQ 480
L + I L+ GA + +R +E T + G DI + L+
Sbjct: 44 -DVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLE 102
Query: 481 HGASVDAPTKDGYTALHISAKEGQDE-------VASILTESGASITATTKKGFTPLHLAA 533
GA + A K + + + I ++SG + K G T L
Sbjct: 103 KGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVK 162
Query: 534 KYGRMKIAQMLLQKDAPVDSQ 554
+ + +M+ + +
Sbjct: 163 RCQKPIALKMMEDYIKKYNLK 183
Score = 137 bits (347), Expect = 2e-37
Identities = 26/187 (13%), Positives = 46/187 (24%), Gaps = 10/187 (5%)
Query: 156 AKTRDGLTPLHCAARSGHDNVIDILIEKGA---ALYSKTKNGLAPLHMASQGDHEAATRV 212
+ + AA G L EKG K+ L + +
Sbjct: 1 SNAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMF 60
Query: 213 LIYHGAGVDEITVDYLTALHVASHCGH------VRVAKTLLDRKADPNARALNGFTPLHI 266
LI GA + T + T G + K L++ AD A +
Sbjct: 61 LINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFK 120
Query: 267 ACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGAS 326
+ + + G T L + + ++++ Y
Sbjct: 121 NIFNYFVDENEMIPL-YKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKK 179
Query: 327 IAATTES 333
S
Sbjct: 180 YNLKENS 186
Score = 137 bits (347), Expect = 2e-37
Identities = 29/183 (15%), Positives = 56/183 (30%), Gaps = 16/183 (8%)
Query: 638 AKNGYTPLHIAAKKNQMDIATTLLEYNA---KPNAESKAGFTPLHLSAQEGHTDMSSLLI 694
A + Y + AA + L E + +S + L + E +S LI
Sbjct: 3 AMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLI 62
Query: 695 EHGATVSHQAKNGLTPLHLCAQEDKVNVATITMF------NGAEIDPVTKAGFTPLHIAS 748
GA + + K G T Q ++ T GA+I + K +
Sbjct: 63 NKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNI 122
Query: 749 HFGQLNMVR-------YLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNA 801
++ ++G + G T L + + + + ++ + N
Sbjct: 123 FNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNL 182
Query: 802 TTN 804
N
Sbjct: 183 KEN 185
Score = 137 bits (346), Expect = 3e-37
Identities = 31/181 (17%), Positives = 59/181 (32%), Gaps = 16/181 (8%)
Query: 92 SLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHN---ITPLHVACKWGKVAMVELLI 148
+++ + + AA L KG + + L + + LI
Sbjct: 3 AMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLI 62
Query: 149 SKGANIEAKTRDGLTPLHCAARSGHDNVID------ILIEKGAALYSKTKNGLAPLHMAS 202
+KGA+I+++T++G T + G +++ I +EKGA + + K +
Sbjct: 63 NKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNI 122
Query: 203 QGDHEAATR-------VLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNA 255
+ G + LTAL C K + D N
Sbjct: 123 FNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNL 182
Query: 256 R 256
+
Sbjct: 183 K 183
Score = 135 bits (341), Expect = 2e-36
Identities = 28/201 (13%), Positives = 59/201 (29%), Gaps = 29/201 (14%)
Query: 520 ATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPV-DSQGKVASILTESGASITATTKKGFTP 578
+ + + AA G + L +K +S K + +
Sbjct: 1 SNAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLK---------------SNILYDV 45
Query: 579 LHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVAL------LLLDRGA 632
L R KI+ L+ K A + S+ K G T ++ + L++GA
Sbjct: 46 LRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGA 105
Query: 633 SPHAVAKNGYTPLHIAAKKNQMDIATT-------LLEYNAKPNAESKAGFTPLHLSAQEG 685
A+ K + +D + + + K G T L +
Sbjct: 106 DITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQ 165
Query: 686 HTDMSSLLIEHGATVSHQAKN 706
++ ++ + + +
Sbjct: 166 KPIALKMMEDYIKKYNLKENS 186
Score = 131 bits (331), Expect = 3e-35
Identities = 27/205 (13%), Positives = 58/205 (28%), Gaps = 28/205 (13%)
Query: 296 ARALNGFTPLHIACKKNRYKVVELLLKYGASIAAT---TESGLTPLHVASFMGCMNIAIF 352
+ A++ + + A Y+ L + G + + L + I++F
Sbjct: 1 SNAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMF 60
Query: 353 LLQAGAAPDTATVRGETPLHLAARANQTDI------VRILLRNGASVDARAREDQTPLHV 406
L+ GA + T G T + DI +I L GA + A + + +
Sbjct: 61 LINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFK 120
Query: 407 ASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVA 466
L ++ I ++G + + + T L
Sbjct: 121 NIFNYFVDENEMIPLYKL-------------------IFSQSGLQLLIKDKWGLTALEFV 161
Query: 467 SRLGNGDIASLLLQHGASVDAPTKD 491
R ++ + +
Sbjct: 162 KRCQKPIALKMMEDYIKKYNLKENS 186
Score = 121 bits (306), Expect = 6e-32
Identities = 28/217 (12%), Positives = 59/217 (27%), Gaps = 50/217 (23%)
Query: 255 ARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALN---GFTPLHIACKK 311
+ A++ + + A Y+ L ++ + L + L +
Sbjct: 1 SNAMSEYRTVSAAAMLGTYE--------DFLELFEKGYEDKESVLKSNILYDVLRNNNDE 52
Query: 312 NRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAI------FLLQAGAAPDTATV 365
RYK+ L+ GA I + T+ G T G +I L+ GA
Sbjct: 53 ARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYK 112
Query: 366 RGETPLHLAARANQTDIVR-------ILLRNGASVDARAREDQTPLHVASRLRRFSSASQ 418
+ + D I ++G + + +
Sbjct: 113 PYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKW------------------- 153
Query: 419 SALTRVRGETPLHLAARANQTDIVRILLRNGASVDAR 455
G T L R + ++++ + +
Sbjct: 154 -------GLTALEFVKRCQKPIALKMMEDYIKKYNLK 183
Score = 117 bits (295), Expect = 2e-30
Identities = 31/186 (16%), Positives = 57/186 (30%), Gaps = 25/186 (13%)
Query: 25 ALHIAAKKDDCKAAALLLE----VSFSNTKLEVSLSNTKLEVSLSNTKFEATGQEEVAKI 80
+ AA + L E S K + L L N E + +++
Sbjct: 9 TVSAAAMLGTYEDFLELFEKGYEDKESVLK------SNILYDVLRNNNDE--ARYKISMF 60
Query: 81 LVDNGATINVQSLNGFTPLYMAAQENHDGV------VRYLLSKGGNQTLATEHNITPLHV 134
L++ GA I ++ G T + Q + + + L KG + T + +
Sbjct: 61 LINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFK 120
Query: 135 ACKWGKVAMVE-------LLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAAL 187
V E + G + K + GLT L R + ++ +
Sbjct: 121 NIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKY 180
Query: 188 YSKTKN 193
K +
Sbjct: 181 NLKENS 186
Score = 79.3 bits (196), Expect = 4e-17
Identities = 18/142 (12%), Positives = 38/142 (26%), Gaps = 36/142 (25%)
Query: 669 AESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMF 728
+ + + + + +A G + L E G + +
Sbjct: 1 SNAMSEYRTVSAAAMLGTYEDFLELFEKGYEDK--ESVLKSNIL---------------- 42
Query: 729 NGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGR--- 785
+ L + + + +L+ GA++ + T G T Q G
Sbjct: 43 ------------YDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDI 90
Query: 786 ---VLIIDLLLGAGAQPNATTN 804
+ + L GA A
Sbjct: 91 TGTTELCKIFLEKGADITALYK 112
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 134 bits (341), Expect = 4e-37
Identities = 46/123 (37%), Positives = 72/123 (58%)
Query: 426 GETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASV 485
L AARA Q D VRIL+ NGA V+A+ TPL++A+ G+ +I +LL++GA V
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV 73
Query: 486 DAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLL 545
+A G+T LH++A G E+A +L + GA + A K G T ++ G +A++L
Sbjct: 74 NAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQ 133
Query: 546 QKD 548
+ +
Sbjct: 134 KLN 136
Score = 133 bits (338), Expect = 1e-36
Identities = 37/139 (26%), Positives = 67/139 (48%), Gaps = 7/139 (5%)
Query: 78 AKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACK 137
+ +G+ + L AA+ D VR L++ G + E+ +TPL++A
Sbjct: 4 SHHHHHHGSDLG-------KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATA 56
Query: 138 WGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAP 197
G + +VE+L+ GA++ A G TPLH AA GH + ++L++ GA + ++ K G
Sbjct: 57 HGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTA 116
Query: 198 LHMASQGDHEAATRVLIYH 216
++ +E +L
Sbjct: 117 FDISIGNGNEDLAEILQKL 135
Score = 127 bits (322), Expect = 2e-34
Identities = 40/122 (32%), Positives = 70/122 (57%)
Query: 575 GFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASP 634
L AA+ G+ ++L+ A V+++ + G+TPL++A+ + H + +LL GA
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV 73
Query: 635 HAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLI 694
+AV G+TPLH+AA ++IA LL++ A NA+ K G T +S G+ D++ +L
Sbjct: 74 NAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQ 133
Query: 695 EH 696
+
Sbjct: 134 KL 135
Score = 127 bits (321), Expect = 2e-34
Identities = 37/118 (31%), Positives = 62/118 (52%)
Query: 130 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 189
L A + G+ V +L++ GA++ AK GLTPL+ A GH ++++L++ GA + +
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNA 75
Query: 190 KTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLL 247
G PLH+A+ H VL+ HGA V+ TA ++ G+ +A+ L
Sbjct: 76 VDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQ 133
Score = 124 bits (314), Expect = 2e-33
Identities = 37/126 (29%), Positives = 64/126 (50%), Gaps = 6/126 (4%)
Query: 57 NTKLEVSLSNTKFEATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLS 116
KL + GQ++ +IL+ NGA +N + G TPLY+A H +V LL
Sbjct: 15 GKKLLEAARA------GQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLK 68
Query: 117 KGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNV 176
G + TPLH+A G + + E+L+ GA++ A+ + G T + +G++++
Sbjct: 69 NGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDL 128
Query: 177 IDILIE 182
+IL +
Sbjct: 129 AEILQK 134
Score = 121 bits (307), Expect = 1e-32
Identities = 41/146 (28%), Positives = 65/146 (44%), Gaps = 15/146 (10%)
Query: 178 DILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHC 237
G+ + L A++ + R+L+ +GA V+ LT L++A+
Sbjct: 5 HHHHHHGS-------DLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAH 57
Query: 238 GHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNAR 297
GH+ + + LL AD NA GFTPLH+A + H+ +A+ LL AD NA+
Sbjct: 58 GHLEIVEVLLKNGADVNAVDAIGFTPLHLA--------AFIGHLEIAEVLLKHGADVNAQ 109
Query: 298 ALNGFTPLHIACKKNRYKVVELLLKY 323
G T I+ + E+L K
Sbjct: 110 DKFGKTAFDISIGNGNEDLAEILQKL 135
Score = 121 bits (306), Expect = 2e-32
Identities = 39/128 (30%), Positives = 63/128 (49%), Gaps = 7/128 (5%)
Query: 145 ELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQG 204
G+++ L AAR+G D+ + IL+ GA + +K + GL PL++A+
Sbjct: 5 HHHHHHGSDLG-------KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAH 57
Query: 205 DHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPL 264
H VL+ +GA V+ + T LH+A+ GH+ +A+ LL AD NA+ G T
Sbjct: 58 GHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAF 117
Query: 265 HIACKKNR 272
I+
Sbjct: 118 DISIGNGN 125
Score = 121 bits (306), Expect = 2e-32
Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 24/155 (15%)
Query: 444 ILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEG 503
+G+ + L A+R G D +L+ +GA V+A + G T L+++ G
Sbjct: 6 HHHHHGSDL-------GKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHG 58
Query: 504 QDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTE 563
E+ +L ++GA + A GFTPLHLAA G ++IA++LL+
Sbjct: 59 HLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKH---------------- 102
Query: 564 SGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKD 598
GA + A K G T ++ G +A++L + +
Sbjct: 103 -GADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136
Score = 120 bits (305), Expect = 3e-32
Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 17/140 (12%)
Query: 525 GFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAK 584
L AA+ G+ ++L+ GA + A + G TPL+LA
Sbjct: 14 LGKKLLEAARAGQDDEVRILMAN-----------------GADVNAKDEYGLTPLYLATA 56
Query: 585 YGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTP 644
+G ++I ++LL+ A V++ G TPLH+A+ H +A +LL GA +A K G T
Sbjct: 57 HGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTA 116
Query: 645 LHIAAKKNQMDIATTLLEYN 664
I+ D+A L + N
Sbjct: 117 FDISIGNGNEDLAEILQKLN 136
Score = 119 bits (302), Expect = 7e-32
Identities = 39/154 (25%), Positives = 66/154 (42%), Gaps = 33/154 (21%)
Query: 640 NGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGAT 699
+ L AA+ Q D L+ A NA+ + G TPL+L+ GH ++ +L+++GA
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA- 71
Query: 700 VSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYL 759
+++ V GFTPLH+A+ G L + L
Sbjct: 72 --------------------------------DVNAVDAIGFTPLHLAAFIGHLEIAEVL 99
Query: 760 VENGANVNATTNLGYTPLHQASQQGRVLIIDLLL 793
+++GA+VNA G T + G + ++L
Sbjct: 100 LKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQ 133
Score = 119 bits (302), Expect = 7e-32
Identities = 38/121 (31%), Positives = 61/121 (50%)
Query: 603 SQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLE 662
G + L A+ + +L+ GA +A + G TPL++A ++I LL+
Sbjct: 9 HHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLK 68
Query: 663 YNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNV 722
A NA GFTPLHL+A GH +++ +L++HGA V+ Q K G T + ++
Sbjct: 69 NGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDL 128
Query: 723 A 723
A
Sbjct: 129 A 129
Score = 118 bits (298), Expect = 2e-31
Identities = 39/129 (30%), Positives = 60/129 (46%), Gaps = 8/129 (6%)
Query: 259 NGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVE 318
+ L A + + L+ AD NA+ G TPL++A ++VE
Sbjct: 13 DLGKKLLEA--------ARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVE 64
Query: 319 LLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARAN 378
+LLK GA + A G TPLH+A+F+G + IA LL+ GA + G+T ++
Sbjct: 65 VLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNG 124
Query: 379 QTDIVRILL 387
D+ IL
Sbjct: 125 NEDLAEILQ 133
Score = 112 bits (282), Expect = 4e-29
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 26/147 (17%)
Query: 300 NGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAA 359
+ L A + + V +L+ GA + A E GLTPL++A+ G + I LL+ GA
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD 72
Query: 360 PDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQS 419
+ G TPLHLAA +I +LL++GA V+A+ +
Sbjct: 73 VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKF-------------------- 112
Query: 420 ALTRVRGETPLHLAARANQTDIVRILL 446
G+T ++ D+ IL
Sbjct: 113 ------GKTAFDISIGNGNEDLAEILQ 133
Score = 97.5 bits (244), Expect = 4e-24
Identities = 38/112 (33%), Positives = 60/112 (53%), Gaps = 7/112 (6%)
Query: 693 LIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQ 752
HG+ + L A+ + + I M NGA+++ + G TPL++A+ G
Sbjct: 7 HHHHGS-------DLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGH 59
Query: 753 LNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTN 804
L +V L++NGA+VNA +G+TPLH A+ G + I ++LL GA NA
Sbjct: 60 LEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDK 111
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 133 bits (338), Expect = 7e-37
Identities = 31/115 (26%), Positives = 50/115 (43%)
Query: 94 NGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGAN 153
A + V+ ++KG + E PLH A G++ ++E L+ KGA+
Sbjct: 6 MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD 65
Query: 154 IEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEA 208
I A + +TPL A GH + + +L+ KGA K +GL +A
Sbjct: 66 INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKA 120
Score = 131 bits (333), Expect = 3e-36
Identities = 29/117 (24%), Positives = 42/117 (35%)
Query: 426 GETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASV 485
+ A + D V+ + G V+ + PLH A+ G +I LL GA +
Sbjct: 7 CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI 66
Query: 486 DAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQ 542
+AP K T L + EG +L GA T G T + Q
Sbjct: 67 NAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123
Score = 129 bits (327), Expect = 2e-35
Identities = 29/115 (25%), Positives = 50/115 (43%)
Query: 130 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 189
A K G + V+ ++KG ++ G PLH AA G +++ L+ KGA + +
Sbjct: 9 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA 68
Query: 190 KTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAK 244
K+ + PL A H + ++L+ GA D LTA + + +
Sbjct: 69 PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123
Score = 127 bits (321), Expect = 1e-34
Identities = 34/105 (32%), Positives = 49/105 (46%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
G + K V G +N G PL+ AA ++ +LL KG + +H+ITPL
Sbjct: 18 GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 77
Query: 133 HVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVI 177
A G V+ V+LL+SKGA+ K DGLT ++
Sbjct: 78 LSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALL 122
Score = 126 bits (320), Expect = 2e-34
Identities = 25/116 (21%), Positives = 40/116 (34%)
Query: 573 KKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGA 632
A K G + + + K V+ + G PLH A+ + LL +GA
Sbjct: 5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGA 64
Query: 633 SPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTD 688
+A K+ TPL A + + LL A + G T + +
Sbjct: 65 DINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKA 120
Score = 124 bits (315), Expect = 7e-34
Identities = 30/114 (26%), Positives = 43/114 (37%)
Query: 605 GKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYN 664
G A + + +G + + G PLH AA Q++I LL
Sbjct: 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKG 63
Query: 665 AKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQED 718
A NA K TPL + EGH LL+ GA + + +GLT +
Sbjct: 64 ADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQA 117
Score = 124 bits (315), Expect = 8e-34
Identities = 27/154 (17%), Positives = 45/154 (29%), Gaps = 33/154 (21%)
Query: 636 AVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIE 695
+ A K +D + N + G PLH +A G ++ L+
Sbjct: 2 PLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLL 61
Query: 696 HGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNM 755
GA +I+ K TPL A + G ++
Sbjct: 62 KGA---------------------------------DINAPDKHHITPLLSAVYEGHVSC 88
Query: 756 VRYLVENGANVNATTNLGYTPLHQASQQGRVLII 789
V+ L+ GA+ G T Q ++
Sbjct: 89 VKLLLSKGADKTVKGPDGLTAFEATDNQAIKALL 122
Score = 121 bits (306), Expect = 1e-32
Identities = 31/134 (23%), Positives = 51/134 (38%), Gaps = 17/134 (12%)
Query: 523 KKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLA 582
A K G + + + K G + T + G PLH A
Sbjct: 5 SMCDKEFMWALKNGDLDEVKDYVAK-----------------GEDVNRTLEGGRKPLHYA 47
Query: 583 AKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGY 642
A G+++I + LL K A +++ K+ +TPL A + H + LLL +GA +G
Sbjct: 48 ADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGL 107
Query: 643 TPLHIAAKKNQMDI 656
T + +
Sbjct: 108 TAFEATDNQAIKAL 121
Score = 121 bits (306), Expect = 2e-32
Identities = 32/134 (23%), Positives = 49/134 (36%), Gaps = 17/134 (12%)
Query: 490 KDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDA 549
+ K G + G + T + G PLH AA G+++I + LL K
Sbjct: 5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK-- 62
Query: 550 PVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGV 609
GA I A K TPL A G + ++LL K A +G +G+
Sbjct: 63 ---------------GADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGL 107
Query: 610 TPLHVASHYDHQNV 623
T + + +
Sbjct: 108 TAFEATDNQAIKAL 121
Score = 120 bits (303), Expect = 4e-32
Identities = 32/132 (24%), Positives = 43/132 (32%), Gaps = 17/132 (12%)
Query: 461 TPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITA 520
A + G+ D + G V+ + G LH +A GQ E+ L GA I A
Sbjct: 9 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA 68
Query: 521 TTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLH 580
K TPL A G + ++LL K GA T G T
Sbjct: 69 PDKHHITPLLSAVYEGHVSCVKLLLSK-----------------GADKTVKGPDGLTAFE 111
Query: 581 LAAKYGRMKIAQ 592
+ Q
Sbjct: 112 ATDNQAIKALLQ 123
Score = 118 bits (299), Expect = 1e-31
Identities = 25/112 (22%), Positives = 43/112 (38%)
Query: 160 DGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAG 219
A ++G + + + KG + + G PLH A+ L+ GA
Sbjct: 6 MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD 65
Query: 220 VDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKN 271
++ ++T L A + GHV K LL + AD + +G T +
Sbjct: 66 INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQA 117
Score = 117 bits (295), Expect = 4e-31
Identities = 28/126 (22%), Positives = 43/126 (34%), Gaps = 8/126 (6%)
Query: 259 NGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVE 318
A K + K + + D N G PLH A + +++E
Sbjct: 6 MCDKEFMWALKNG--------DLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILE 57
Query: 319 LLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARAN 378
LL GA I A + +TPL A + G ++ LL GA G T
Sbjct: 58 FLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQA 117
Query: 379 QTDIVR 384
+++
Sbjct: 118 IKALLQ 123
Score = 115 bits (292), Expect = 1e-30
Identities = 28/110 (25%), Positives = 38/110 (34%)
Query: 300 NGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAA 359
A K V+ + G + T E G PLH A+ G + I FLL GA
Sbjct: 6 MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD 65
Query: 360 PDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASR 409
+ TPL A V++LL GA + + T
Sbjct: 66 INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDN 115
Score = 107 bits (270), Expect = 1e-27
Identities = 25/100 (25%), Positives = 42/100 (42%)
Query: 705 KNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGA 764
+ ++ + G +++ + G PLH A+ GQL ++ +L+ GA
Sbjct: 5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGA 64
Query: 765 NVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTN 804
++NA TPL A +G V + LLL GA
Sbjct: 65 DINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGP 104
Score = 88.2 bits (220), Expect = 5e-21
Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 13/99 (13%)
Query: 735 PVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLG 794
P+ A G L+ V+ V G +VN T G PLH A+ G++ I++ LL
Sbjct: 2 PLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLL 61
Query: 795 AGAQPNATTN-----LFC--------CATILVKNGAEID 820
GA NA L C +L+ GA+
Sbjct: 62 KGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKT 100
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 122 bits (309), Expect = 2e-33
Identities = 41/92 (44%), Positives = 62/92 (67%)
Query: 94 NGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGAN 153
NG TPL++AA+ H VV+ LL G + ++ TPLH+A + G + +V+LL+ GA+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 154 IEAKTRDGLTPLHCAARSGHDNVIDILIEKGA 185
+ AK ++G TPLH AAR+GH V+ +L+E GA
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 113 bits (286), Expect = 3e-30
Identities = 40/89 (44%), Positives = 62/89 (69%)
Query: 130 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 189
TPLH+A + G + +V+LL+ GA++ AK ++G TPLH AAR+GH V+ +L+E GA + +
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 190 KTKNGLAPLHMASQGDHEAATRVLIYHGA 218
K KNG PLH+A++ H ++L+ GA
Sbjct: 64 KDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 110 bits (279), Expect = 2e-29
Identities = 45/92 (48%), Positives = 60/92 (65%)
Query: 607 NGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAK 666
NG TPLH+A+ H V LLL+ GA +A KNG TPLH+AA+ +++ LLE A
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 667 PNAESKAGFTPLHLSAQEGHTDMSSLLIEHGA 698
NA+ K G TPLHL+A+ GH ++ LL+E GA
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 108 bits (274), Expect = 1e-28
Identities = 43/91 (47%), Positives = 64/91 (70%)
Query: 426 GETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASV 485
G TPLHLAAR ++V++LL GA V+A+ + +TPLH+A+R G+ ++ LLL+ GA V
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 486 DAPTKDGYTALHISAKEGQDEVASILTESGA 516
+A K+G T LH++A+ G EV +L E+GA
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 103 bits (260), Expect = 8e-27
Identities = 41/90 (45%), Positives = 63/90 (70%)
Query: 460 QTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASIT 519
+TPLH+A+R G+ ++ LLL+ GA V+A K+G T LH++A+ G EV +L E+GA +
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 520 ATTKKGFTPLHLAAKYGRMKIAQMLLQKDA 549
A K G TPLHLAA+ G +++ ++LL+ A
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 103 bits (259), Expect = 1e-26
Identities = 41/92 (44%), Positives = 59/92 (64%)
Query: 300 NGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAA 359
NG TPLH+A + +VV+LLL+ GA + A ++G TPLH+A+ G + + LL+AGA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 360 PDTATVRGETPLHLAARANQTDIVRILLRNGA 391
+ G TPLHLAAR ++V++LL GA
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 103 bits (259), Expect = 1e-26
Identities = 44/124 (35%), Positives = 63/124 (50%), Gaps = 33/124 (26%)
Query: 674 GFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEI 733
G TPLHL+A+ GH ++ LL+E GA ++
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGA---------------------------------DV 28
Query: 734 DPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLL 793
+ K G TPLH+A+ G L +V+ L+E GA+VNA G TPLH A++ G + ++ LLL
Sbjct: 29 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 88
Query: 794 GAGA 797
AGA
Sbjct: 89 EAGA 92
Score = 103 bits (259), Expect = 1e-26
Identities = 42/91 (46%), Positives = 61/91 (67%)
Query: 575 GFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASP 634
G TPLHLAA+ G +++ ++LL+ A V+++ KNG TPLH+A+ H V LLL+ GA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 635 HAVAKNGYTPLHIAAKKNQMDIATTLLEYNA 665
+A KNG TPLH+AA+ +++ LLE A
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 101 bits (254), Expect = 7e-26
Identities = 43/100 (43%), Positives = 61/100 (61%), Gaps = 8/100 (8%)
Query: 259 NGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVE 318
NG TPLH+A + H+ V K LL+ AD NA+ NG TPLH+A + +VV+
Sbjct: 1 NGRTPLHLA--------ARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK 52
Query: 319 LLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGA 358
LLL+ GA + A ++G TPLH+A+ G + + LL+AGA
Sbjct: 53 LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 99.7 bits (250), Expect = 2e-25
Identities = 43/108 (39%), Positives = 64/108 (59%), Gaps = 17/108 (15%)
Query: 525 GFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAK 584
G TPLHLAA+ G +++ ++LL+ GA + A K G TPLHLAA+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEA-----------------GADVNAKDKNGRTPLHLAAR 44
Query: 585 YGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGA 632
G +++ ++LL+ A V+++ KNG TPLH+A+ H V LLL+ GA
Sbjct: 45 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 98.6 bits (247), Expect = 6e-25
Identities = 43/125 (34%), Positives = 62/125 (49%), Gaps = 33/125 (26%)
Query: 640 NGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGAT 699
NG TPLH+AA+ +++ LLE A NA+ K G TPLHL+A+ GH ++ LL+E
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA--- 57
Query: 700 VSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYL 759
GA+++ K G TPLH+A+ G L +V+ L
Sbjct: 58 ------------------------------GADVNAKDKNGRTPLHLAARNGHLEVVKLL 87
Query: 760 VENGA 764
+E GA
Sbjct: 88 LEAGA 92
Score = 97.4 bits (244), Expect = 1e-24
Identities = 39/92 (42%), Positives = 58/92 (63%)
Query: 160 DGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAG 219
+G TPLH AAR+GH V+ +L+E GA + +K KNG PLH+A++ H ++L+ GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 220 VDEITVDYLTALHVASHCGHVRVAKTLLDRKA 251
V+ + T LH+A+ GH+ V K LL+ A
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 96.3 bits (241), Expect = 3e-24
Identities = 41/109 (37%), Positives = 63/109 (57%), Gaps = 17/109 (15%)
Query: 491 DGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAP 550
+G T LH++A+ G EV +L E+GA + A K G TPLHLAA+ G +++ ++LL+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA--- 57
Query: 551 VDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDA 599
GA + A K G TPLHLAA+ G +++ ++LL+ A
Sbjct: 58 --------------GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 90.9 bits (227), Expect = 3e-22
Identities = 38/100 (38%), Positives = 55/100 (55%), Gaps = 8/100 (8%)
Query: 193 NGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKAD 252
NG PLH+A++ H ++L+ GA V+ + T LH+A+ GH+ V K LL+ AD
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 253 PNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKA 292
NA+ NG TPLH+A + H+ V K LL+ A
Sbjct: 61 VNAKDKNGRTPLHLAARN--------GHLEVVKLLLEAGA 92
Score = 88.6 bits (221), Expect = 2e-21
Identities = 42/118 (35%), Positives = 60/118 (50%), Gaps = 26/118 (22%)
Query: 333 SGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGAS 392
+G TPLH+A+ G + + LL+AGA + G TPLHLAAR ++V++LL GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 393 VDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGA 450
V+A+ + G TPLHLAAR ++V++LL GA
Sbjct: 61 VNAKDKN--------------------------GRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 85.9 bits (214), Expect = 2e-20
Identities = 31/65 (47%), Positives = 42/65 (64%)
Query: 740 GFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP 799
G TPLH+A+ G L +V+ L+E GA+VNA G TPLH A++ G + ++ LLL AGA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 800 NATTN 804
NA
Sbjct: 62 NAKDK 66
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 118 bits (297), Expect = 2e-31
Identities = 31/112 (27%), Positives = 56/112 (50%), Gaps = 3/112 (2%)
Query: 102 AAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDG 161
+ +H L+ +G + L A + G+ V +L++ GA++ AK ++G
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMG---SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57
Query: 162 LTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVL 213
TPLH AAR+GH V+ +L+E GA + ++ K G ++ +E +L
Sbjct: 58 STPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 111 bits (279), Expect = 4e-29
Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 3/108 (2%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPL 132
+ LV G+ + + L AA+ D VR L++ G + ++ TPL
Sbjct: 5 HHHHHSSGLVPRGSHMGS---DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPL 61
Query: 133 HVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 180
H+A + G + +V+LL+ GA++ A+ + G T + +G++++ +IL
Sbjct: 62 HLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 111 bits (279), Expect = 4e-29
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 3/112 (2%)
Query: 433 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDG 492
+ + L+ G+ + + L A+R G D +L+ +GA V A K+G
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGSD---LGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57
Query: 493 YTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQML 544
T LH++A+ G EV +L E+GA + A K G T ++ G +A++L
Sbjct: 58 STPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 106 bits (266), Expect = 2e-27
Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 3/112 (2%)
Query: 135 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNG 194
L+ +G+++ + D L AAR+G D+ + IL+ GA + +K KNG
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGS---DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57
Query: 195 LAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTL 246
PLH+A++ H ++L+ GA V TA ++ G+ +A+ L
Sbjct: 58 STPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 104 bits (263), Expect = 6e-27
Identities = 42/138 (30%), Positives = 60/138 (43%), Gaps = 29/138 (21%)
Query: 374 AARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLA 433
+ + L+ G+ + + L A
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGSD-----------------------------LGKKLLEA 31
Query: 434 ARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGY 493
ARA Q D VRIL+ NGA V A+ + TPLH+A+R G+ ++ LLL+ GA V A K G
Sbjct: 32 ARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGK 91
Query: 494 TALHISAKEGQDEVASIL 511
TA IS G +++A IL
Sbjct: 92 TAFDISIDNGNEDLAEIL 109
Score = 104 bits (262), Expect = 7e-27
Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 11/120 (9%)
Query: 234 ASHCGHVRVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKAD 293
S H + L+ R + + + L A + + L+ AD
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGS---DLGKKLLEA--------ARAGQDDEVRILMANGAD 49
Query: 294 PNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFL 353
A+ NG TPLH+A + +VV+LLL+ GA + A + G T ++ G ++A L
Sbjct: 50 VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 103 bits (259), Expect = 2e-26
Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 615 ASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAG 674
S + H + + L+ RG+ + + L AA+ Q D L+ A A+ K G
Sbjct: 1 GSSHHHHHHSSGLVPRGSH---MGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57
Query: 675 FTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATI 725
TPLHL+A+ GH ++ LL+E GA V Q K G T + ++A I
Sbjct: 58 STPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEI 108
Score = 101 bits (253), Expect = 1e-25
Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 20/129 (15%)
Query: 466 ASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKG 525
S + +S L+ G+ + + D L +A+ GQD+ IL +GA + A K G
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGS---DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57
Query: 526 FTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKY 585
TPLHLAA+ G +++ ++LL+ GA + A K G T ++
Sbjct: 58 STPLHLAARNGHLEVVKLLLEA-----------------GADVXAQDKFGKTAFDISIDN 100
Query: 586 GRMKIAQML 594
G +A++L
Sbjct: 101 GNEDLAEIL 109
Score = 100 bits (252), Expect = 2e-25
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 3/112 (2%)
Query: 582 AAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNG 641
+ + + L+ + + + + L A+ + +L+ GA A KNG
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMG---SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57
Query: 642 YTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLL 693
TPLH+AA+ +++ LLE A A+ K G T +S G+ D++ +L
Sbjct: 58 STPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 100 bits (251), Expect = 2e-25
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 3/111 (2%)
Query: 682 AQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVTKAGF 741
+ H SS L+ G+ + + L A+ + + I M NGA++ K G
Sbjct: 2 SSHHHHHHSSGLVPRGSHMG---SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGS 58
Query: 742 TPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLL 792
TPLH+A+ G L +V+ L+E GA+V A G T + G + ++L
Sbjct: 59 TPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 97.6 bits (244), Expect = 2e-24
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 3/108 (2%)
Query: 279 NHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPL 338
+H + L+ R + + + L A + + V +L+ GA +AA ++G TPL
Sbjct: 5 HHHHHSSGLVPRGSHMGS---DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPL 61
Query: 339 HVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRIL 386
H+A+ G + + LL+AGA G+T ++ D+ IL
Sbjct: 62 HLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 96.1 bits (240), Expect = 7e-24
Identities = 31/129 (24%), Positives = 50/129 (38%), Gaps = 20/129 (15%)
Query: 532 AAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIA 591
+ + + L+ + + + L AA+ G+
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMG--------------------SDLGKKLLEAARAGQDDEV 40
Query: 592 QMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKK 651
++L+ A V ++ KNG TPLH+A+ H V LLL+ GA A K G T I+
Sbjct: 41 RILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDN 100
Query: 652 NQMDIATTL 660
D+A L
Sbjct: 101 GNEDLAEIL 109
Score = 90.3 bits (225), Expect = 8e-22
Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 3/102 (2%)
Query: 308 ACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRG 367
+ + L+ G+ + + L A+ G + L+ GA G
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGS---DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57
Query: 368 ETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASR 409
TPLHLAAR ++V++LL GA V A+ + +T ++
Sbjct: 58 STPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISID 99
Score = 79.5 bits (197), Expect = 4e-18
Identities = 29/150 (19%), Positives = 49/150 (32%), Gaps = 47/150 (31%)
Query: 2 QQGHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCKAAALLLEVSFSNTKLEVSLSN 57
H + L+ + L AA+
Sbjct: 3 SHHHHHHSSGLVPRGSHMGSDLGK---KLLEAARA------------------------- 34
Query: 58 TKLEVSLSNTKFEATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSK 117
GQ++ +IL+ NGA + + NG TPL++AA+ H VV+ LL
Sbjct: 35 ---------------GQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA 79
Query: 118 GGNQTLATEHNITPLHVACKWGKVAMVELL 147
G + + T ++ G + E+L
Sbjct: 80 GADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 59.9 bits (146), Expect = 3e-11
Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 16/86 (18%)
Query: 747 ASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTN-- 804
S + LV G+++ + L +A++ G+ + +L+ GA A
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGSD---LGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57
Query: 805 ---LFCCAT--------ILVKNGAEI 819
L A +L++ GA++
Sbjct: 58 STPLHLAARNGHLEVVKLLLEAGADV 83
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 87.7 bits (217), Expect = 4e-19
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 3/105 (2%)
Query: 413 FSSASQSALTRVRGETPLHLAARANQTDIVRI---LLRNGASVDARAREDQTPLHVASRL 469
+ A ET LHLA R+ + I L++N ++D + + T LH
Sbjct: 156 LTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLT 215
Query: 470 GNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTES 514
N + LLL+ AS++ + G T L I+ + + +LT++
Sbjct: 216 DNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQA 260
Score = 86.2 bits (213), Expect = 1e-18
Identities = 27/146 (18%), Positives = 48/146 (32%), Gaps = 15/146 (10%)
Query: 270 KNRYKSSHCNHVWVAKTLLDRKADPNA------RALNGFTPLHIAC---KKNRYKVVELL 320
+ ++ ++ D T LH+A + +V+ L
Sbjct: 132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFL 191
Query: 321 LKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQT 380
++ ++ T G T LH LL+ A+ + A GETPL +A R
Sbjct: 192 VQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHE 251
Query: 381 DIVRILLRNGASVDARAREDQTPLHV 406
+L A + + +HV
Sbjct: 252 HCEELLT------QALSGRFNSHVHV 271
Score = 83.9 bits (207), Expect = 7e-18
Identities = 27/100 (27%), Positives = 38/100 (38%), Gaps = 3/100 (3%)
Query: 567 SITATTKKGFTPLHLAAKYG---RMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNV 623
+ + T LHLA + + I L+Q +D Q G T LH D+
Sbjct: 161 PLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAEC 220
Query: 624 ALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEY 663
LLL AS ++G TPL IA + L +
Sbjct: 221 LKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQA 260
Score = 81.6 bits (201), Expect = 4e-17
Identities = 30/123 (24%), Positives = 47/123 (38%), Gaps = 9/123 (7%)
Query: 433 AARANQTDIVRILLRNGASVDA------RAREDQTPLHVASRLGNGD---IASLLLQHGA 483
A + + +G + D+T LH+A R + I L+Q+
Sbjct: 137 AVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSG 196
Query: 484 SVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQM 543
++D T G TALH E +L ASI + G TPL +A + ++
Sbjct: 197 NLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEEL 256
Query: 544 LLQ 546
L Q
Sbjct: 257 LTQ 259
Score = 79.7 bits (196), Expect = 2e-16
Identities = 35/206 (16%), Positives = 66/206 (32%), Gaps = 30/206 (14%)
Query: 278 CNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTP 337
N + + PN + +I K + A+ + +
Sbjct: 81 FNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKT 140
Query: 338 LHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRI---LLRNGASVD 394
+ + + L + + ET LHLA R+ + I L++N ++D
Sbjct: 141 RDIFGLLQAYADGVDLTEKIPLANGHE-PDETALHLAVRSVDRTSLHIVDFLVQNSGNLD 199
Query: 395 ARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDA 454
+ + T LH + + +++LLR AS++
Sbjct: 200 KQTGKGSTALHY--------------------------CCLTDNAECLKLLLRGKASIEI 233
Query: 455 RAREDQTPLHVASRLGNGDIASLLLQ 480
+TPL +A RL + LL Q
Sbjct: 234 ANESGETPLDIAKRLKHEHCEELLTQ 259
Score = 79.3 bits (195), Expect = 2e-16
Identities = 29/129 (22%), Positives = 46/129 (35%), Gaps = 11/129 (8%)
Query: 234 ASHCGHVRVAKTLLDRKADPNA------RALNGFTPLHIACKKNRYKSSHCNHVWVAKTL 287
A + D T LH+A +S + + L
Sbjct: 137 AVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAV-----RSVDRTSLHIVDFL 191
Query: 288 LDRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCM 347
+ + + + G T LH C + + ++LLL+ ASI ESG TPL +A +
Sbjct: 192 VQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHE 251
Query: 348 NIAIFLLQA 356
+ L QA
Sbjct: 252 HCEELLTQA 260
Score = 79.3 bits (195), Expect = 2e-16
Identities = 34/167 (20%), Positives = 53/167 (31%), Gaps = 41/167 (24%)
Query: 308 ACKKNRYKVVELLLKYGASIAA------TTESGLTPLHVASFMG---CMNIAIFLLQAGA 358
A K + G + E T LH+A ++I FL+Q
Sbjct: 137 AVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSG 196
Query: 359 APDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQ 418
D T +G T LH + + +++LLR AS++
Sbjct: 197 NLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEI----------------------- 233
Query: 419 SALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHV 465
GETPL +A R +L A + + +HV
Sbjct: 234 ---ANESGETPLDIAKRLKHEHCEELLT------QALSGRFNSHVHV 271
Score = 76.6 bits (188), Expect = 2e-15
Identities = 23/103 (22%), Positives = 47/103 (45%), Gaps = 3/103 (2%)
Query: 115 LSKGGNQTLATEHNITPLHVACKWGK---VAMVELLISKGANIEAKTRDGLTPLHCAARS 171
L++ E + T LH+A + + +V+ L+ N++ +T G T LH +
Sbjct: 156 LTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLT 215
Query: 172 GHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLI 214
+ + +L+ A++ ++G PL +A + HE +L
Sbjct: 216 DNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLT 258
Score = 73.5 bits (180), Expect = 2e-14
Identities = 23/98 (23%), Positives = 35/98 (35%), Gaps = 3/98 (3%)
Query: 701 SHQAKNGLTPLHLCAQEDKVNVATITMF---NGAEIDPVTKAGFTPLHIASHFGQLNMVR 757
++ + T LHL + I F N +D T G T LH ++
Sbjct: 163 ANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLK 222
Query: 758 YLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGA 795
L+ A++ G TPL A + +LL A
Sbjct: 223 LLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQA 260
Score = 72.7 bits (178), Expect = 4e-14
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
Query: 94 NGFTPLYMA---AQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISK 150
T L++A +V +L+ GN T T LH C ++LL+
Sbjct: 168 PDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRG 227
Query: 151 GANIEAKTRDGLTPLHCAARSGHDNVIDILIE 182
A+IE G TPL A R H++ ++L +
Sbjct: 228 KASIEIANESGETPLDIAKRLKHEHCEELLTQ 259
Score = 72.3 bits (177), Expect = 4e-14
Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 3/92 (3%)
Query: 607 NGVTPLHVASHYDHQN---VALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEY 663
T LH+A + + L+ + G T LH + + LL
Sbjct: 168 PDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRG 227
Query: 664 NAKPNAESKAGFTPLHLSAQEGHTDMSSLLIE 695
A +++G TPL ++ + H LL +
Sbjct: 228 KASIEIANESGETPLDIAKRLKHEHCEELLTQ 259
Score = 70.0 bits (171), Expect = 3e-13
Identities = 24/146 (16%), Positives = 52/146 (35%), Gaps = 4/146 (2%)
Query: 583 AKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGY 642
AKY + A+ A V + + L ++ + +
Sbjct: 112 AKYMERRYARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANG-HEPDE 170
Query: 643 TPLHIA---AKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGAT 699
T LH+A + + I L++ + + ++ G T LH + + LL+ A+
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKAS 230
Query: 700 VSHQAKNGLTPLHLCAQEDKVNVATI 725
+ ++G TPL + + + +
Sbjct: 231 IEIANESGETPLDIAKRLKHEHCEEL 256
Score = 66.9 bits (163), Expect = 3e-12
Identities = 28/132 (21%), Positives = 46/132 (34%), Gaps = 28/132 (21%)
Query: 491 DGYTALHISAKEGQDEVASI---LTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQK 547
TALH++ + I L ++ ++ T KG T LH + ++LL+
Sbjct: 168 PDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLR- 226
Query: 548 DAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKN 607
ASI + G TPL +A + ++L Q +
Sbjct: 227 ----------------GKASIEIANESGETPLDIAKRLKHEHCEELLT--------QALS 262
Query: 608 GVTPLHVASHYD 619
G HV Y+
Sbjct: 263 GRFNSHVHVEYE 274
Score = 65.4 bits (159), Expect = 1e-11
Identities = 25/115 (21%), Positives = 44/115 (38%), Gaps = 20/115 (17%)
Query: 517 SITATTKKGFTPLHLAAKYG---RMKIAQMLLQKDAPVDSQGKVASILTESGASITATTK 573
+ + T LHLA + + I L+Q + ++ T
Sbjct: 161 PLANGHEPDETALHLAVRSVDRTSLHIVDFLVQ-----------------NSGNLDKQTG 203
Query: 574 KGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLL 628
KG T LH + ++LL+ A ++ ++G TPL +A H++ LL
Sbjct: 204 KGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLT 258
Score = 62.7 bits (152), Expect = 7e-11
Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 3/95 (3%)
Query: 674 GFTPLHL---SAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNG 730
T LHL S + L+++ + Q G T LH C D + +
Sbjct: 169 DETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGK 228
Query: 731 AEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGAN 765
A I+ ++G TPL IA + L + +
Sbjct: 229 ASIEIANESGETPLDIAKRLKHEHCEELLTQALSG 263
Score = 62.3 bits (151), Expect = 1e-10
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 197 PLHMASQGDHEAATRV---LIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADP 253
LH+A + + + L+ + +D+ T TALH + K LL KA
Sbjct: 172 ALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASI 231
Query: 254 NARALNGFTPLHIACKKN 271
+G TPL IA +
Sbjct: 232 EIANESGETPLDIAKRLK 249
Score = 59.2 bits (143), Expect = 1e-09
Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 740 GFTPLHIASHFGQLN---MVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAG 796
T LH+A +V +LV+N N++ T G T LH + LLL
Sbjct: 169 DETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGK 228
Query: 797 AQPNAT 802
A
Sbjct: 229 ASIEIA 234
Score = 55.0 bits (132), Expect = 3e-08
Identities = 18/77 (23%), Positives = 32/77 (41%)
Query: 77 VAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVAC 136
+ LV N ++ Q+ G T L+ ++ ++ LL + +A E TPL +A
Sbjct: 187 IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK 246
Query: 137 KWGKVAMVELLISKGAN 153
+ ELL +
Sbjct: 247 RLKHEHCEELLTQALSG 263
Score = 43.1 bits (101), Expect = 2e-04
Identities = 25/117 (21%), Positives = 42/117 (35%), Gaps = 14/117 (11%)
Query: 25 ALHIAAKKDD--CKAAALLLEVSFSNTKLEVSLSNTKLEVSLSNTKFEATGQEEVAKILV 82
ALH+A + D L + N + +T L E K+L+
Sbjct: 172 ALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLT------DNAECLKLLL 225
Query: 83 DNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKWG 139
A+I + + +G TPL +A + H+ L + H +HV +W
Sbjct: 226 RGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRF--NSH----VHVEYEWR 276
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 81.6 bits (201), Expect = 5e-17
Identities = 28/146 (19%), Positives = 49/146 (33%), Gaps = 15/146 (10%)
Query: 270 KNRYKSSHCNHVWVAKTLLDRKADPNA------RALNGFTPLHIAC---KKNRYKVVELL 320
+ + + + D LH+A + +V+ +
Sbjct: 153 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFI 212
Query: 321 LKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQT 380
++ G + A G T LH A+ + LL+ A T GET L +A + +
Sbjct: 213 IQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHK 272
Query: 381 DIVRILLRNGASVDARAREDQTPLHV 406
+ +L A+A PLHV
Sbjct: 273 ECEELL------EQAQAGTFAFPLHV 292
Score = 81.2 bits (200), Expect = 9e-17
Identities = 29/125 (23%), Positives = 49/125 (39%), Gaps = 9/125 (7%)
Query: 431 HLAARANQTDIVRILLRNGASVDA------RAREDQTPLHVASRLGNGD---IASLLLQH 481
A V NG ++ LH+A ++ N + ++Q+
Sbjct: 156 WTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN 215
Query: 482 GASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFTPLHLAAKYGRMKIA 541
G +DA DG TALH +A Q + +L + A + + G T L +A K +
Sbjct: 216 GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECE 275
Query: 542 QMLLQ 546
++L Q
Sbjct: 276 ELLEQ 280
Score = 78.5 bits (193), Expect = 5e-16
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Query: 574 KGFTPLHLAAKYGRMK---IAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDR 630
LHLA K + ++Q +D++ +G T LH A+ Y+ + LLL
Sbjct: 189 PEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG 248
Query: 631 GASPHAVAKNGYTPLHIAAKKNQMDIATTLLE 662
A V + G T L IA KK+ + L +
Sbjct: 249 RALVGTVNEAGETALDIARKKHHKECEELLEQ 280
Score = 78.5 bits (193), Expect = 6e-16
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 426 GETPLHLAARA---NQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHG 482
E LHLA + +V +++NG +DA+A + T LH A+ D LLL+
Sbjct: 190 EELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGR 249
Query: 483 ASVDAPTKDGYTALHISAKEGQDEVASILTES 514
A V + G TAL I+ K+ E +L ++
Sbjct: 250 ALVGTVNEAGETALDIARKKHHKECEELLEQA 281
Score = 77.7 bits (191), Expect = 1e-15
Identities = 35/169 (20%), Positives = 51/169 (30%), Gaps = 41/169 (24%)
Query: 306 HIACKKNRYKVVELLLKYGASI------AATTESGLTPLHVASFMG---CMNIAIFLLQA 356
A V G LH+A + + + F++Q
Sbjct: 156 WTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN 215
Query: 357 GAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSA 416
G D G T LH AA NQ D +++LL+ A V
Sbjct: 216 GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEA----------------- 258
Query: 417 SQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHV 465
GET L +A + + + +L A+A PLHV
Sbjct: 259 ---------GETALDIARKKHHKECEELL------EQAQAGTFAFPLHV 292
Score = 77.3 bits (190), Expect = 1e-15
Identities = 30/117 (25%), Positives = 46/117 (39%), Gaps = 29/117 (24%)
Query: 367 GETPLHLAARA---NQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSASQSALTR 423
E LHLA + +V +++NG +DA+A
Sbjct: 190 EELVLHLAVKVANQASLPLVDFIIQNGGHLDAKA-------------------------- 223
Query: 424 VRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQ 480
G T LH AA NQ D +++LL+ A V +T L +A + + + LL Q
Sbjct: 224 ADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQ 280
Score = 73.1 bits (179), Expect = 3e-14
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Query: 124 ATEHNITPLHVACKWGK---VAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 180
A LH+A K + +V+ +I G +++AK DG T LH AA + + +L
Sbjct: 186 AQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLL 245
Query: 181 IEKGAALYSKTKNGLAPLHMASQGDHEAATRVLI 214
++ A + + + G L +A + H+ +L
Sbjct: 246 LKGRALVGTVNEAGETALDIARKKHHKECEELLE 279
Score = 68.5 bits (167), Expect = 1e-12
Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 3/92 (3%)
Query: 707 GLTPLHLCAQEDKVNVATITMF---NGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENG 763
LHL + + F NG +D G T LH A+ + Q + ++ L++
Sbjct: 190 EELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGR 249
Query: 764 ANVNATTNLGYTPLHQASQQGRVLIIDLLLGA 795
A V G T L A ++ +LL A
Sbjct: 250 ALVGTVNEAGETALDIARKKHHKECEELLEQA 281
Score = 67.3 bits (164), Expect = 3e-12
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Query: 608 GVTPLHVASHYDHQN---VALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYN 664
LH+A +Q + ++ G A A +G T LH AA NQ D LL+
Sbjct: 190 EELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGR 249
Query: 665 AKPNAESKAGFTPLHLSAQEGHTDMSSLLIE 695
A ++AG T L ++ ++ H + LL +
Sbjct: 250 ALVGTVNEAGETALDIARKKHHKECEELLEQ 280
Score = 65.4 bits (159), Expect = 1e-11
Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 3/91 (3%)
Query: 95 GFTPLYMAAQENHDG---VVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISKG 151
L++A + + +V +++ GG+ T LH A + + ++LL+
Sbjct: 190 EELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGR 249
Query: 152 ANIEAKTRDGLTPLHCAARSGHDNVIDILIE 182
A + G T L A + H ++L +
Sbjct: 250 ALVGTVNEAGETALDIARKKHHKECEELLEQ 280
Score = 64.2 bits (156), Expect = 3e-11
Identities = 27/152 (17%), Positives = 48/152 (31%), Gaps = 26/152 (17%)
Query: 454 ARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTK------DGYTALHIS---AKEGQ 504
R + L A + +G P LH++ A +
Sbjct: 146 RRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQAS 205
Query: 505 DEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTES 564
+ + ++G + A G T LH AA Y + ++LL+
Sbjct: 206 LPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLK-----------------G 248
Query: 565 GASITATTKKGFTPLHLAAKYGRMKIAQMLLQ 596
A + + G T L +A K + ++L Q
Sbjct: 249 RALVGTVNEAGETALDIARKKHHKECEELLEQ 280
Score = 63.5 bits (154), Expect = 5e-11
Identities = 27/133 (20%), Positives = 43/133 (32%), Gaps = 17/133 (12%)
Query: 199 HMASQGDHEAATRVLIYHGAGVDEITV------DYLTALHVASHCGH---VRVAKTLLDR 249
A + +G + LH+A + + + ++
Sbjct: 156 WTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN 215
Query: 250 KADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIAC 309
+A+A +G T LH A N K LL +A G T L IA
Sbjct: 216 GGHLDAKAADGNTALHYAAL--------YNQPDCLKLLLKGRALVGTVNEAGETALDIAR 267
Query: 310 KKNRYKVVELLLK 322
KK+ + ELL +
Sbjct: 268 KKHHKECEELLEQ 280
Score = 61.2 bits (148), Expect = 3e-10
Identities = 26/107 (24%), Positives = 39/107 (36%), Gaps = 20/107 (18%)
Query: 524 KGFTPLHLAAKYGRMK---IAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLH 580
LHLA K + ++Q +G + A G T LH
Sbjct: 189 PEELVLHLAVKVANQASLPLVDFIIQ-----------------NGGHLDAKAADGNTALH 231
Query: 581 LAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLL 627
AA Y + ++LL+ A V + + G T L +A H+ LL
Sbjct: 232 YAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 278
Score = 61.2 bits (148), Expect = 3e-10
Identities = 23/131 (17%), Positives = 42/131 (32%), Gaps = 11/131 (8%)
Query: 613 HVASHYDHQNVALLLLDRGASPHAVAKN------GYTPLHIA---AKKNQMDIATTLLEY 663
A L G LH+A A + + + +++
Sbjct: 156 WTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN 215
Query: 664 NAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVA 723
+A++ G T LH +A D LL++ A V + G T L A++ +
Sbjct: 216 GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALD-IARKKH-HKE 273
Query: 724 TITMFNGAEID 734
+ A+
Sbjct: 274 CEELLEQAQAG 284
Score = 61.2 bits (148), Expect = 4e-10
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 194 GLAPLHMASQGDHEAATRV---LIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRK 250
LH+A + ++A+ + +I +G +D D TALH A+ K LL +
Sbjct: 190 EELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGR 249
Query: 251 ADPNARALNGFTPLHIACKKN 271
A G T L IA KK+
Sbjct: 250 ALVGTVNEAGETALDIARKKH 270
Score = 60.8 bits (147), Expect = 4e-10
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 740 GFTPLHIASHFG---QLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAG 796
LH+A L +V ++++NG +++A G T LH A+ + + LLL
Sbjct: 190 EELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGR 249
Query: 797 AQPNAT 802
A
Sbjct: 250 ALVGTV 255
Score = 59.6 bits (144), Expect = 1e-09
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 674 GFTPLHLS---AQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNG 730
LHL+ A + + +I++G + +A +G T LH A ++ + + +
Sbjct: 190 EELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGR 249
Query: 731 AEIDPVTKAGFTPLHIA 747
A + V +AG T L IA
Sbjct: 250 ALVGTVNEAGETALDIA 266
Score = 58.1 bits (140), Expect = 4e-09
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 6/90 (6%)
Query: 77 VAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVAC 136
+ ++ NG ++ ++ +G T L+ AA N ++ LL E T L +A
Sbjct: 208 LVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIAR 267
Query: 137 KWGKVAMVELLISKGANIEAKTRDGLTPLH 166
K ELL +A+ PLH
Sbjct: 268 KKHHKECEELL------EQAQAGTFAFPLH 291
Score = 55.0 bits (132), Expect = 3e-08
Identities = 26/131 (19%), Positives = 45/131 (34%), Gaps = 11/131 (8%)
Query: 133 HVACKWGKVAMVELLISKGANIEAKTR------DGLTPLHCAARSGHDN---VIDILIEK 183
A + V + G + LH A + + ++D +I+
Sbjct: 156 WTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN 215
Query: 184 GAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVA 243
G L +K +G LH A+ + ++L+ A V + TAL +A H
Sbjct: 216 GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECE 275
Query: 244 KTLLDRKADPN 254
LL +A
Sbjct: 276 -ELL-EQAQAG 284
Score = 36.1 bits (83), Expect = 0.042
Identities = 11/55 (20%), Positives = 20/55 (36%)
Query: 73 GQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEH 127
Q + K+L+ A + + G T L +A +++H L H
Sbjct: 237 NQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFPLH 291
Score = 35.0 bits (80), Expect = 0.082
Identities = 17/102 (16%), Positives = 29/102 (28%), Gaps = 22/102 (21%)
Query: 745 HIASHFGQLNMVRYLVENGANVNATTNL------GYTPLHQASQQGR---VLIIDLLLGA 795
A L V NG + LH A + + ++D ++
Sbjct: 156 WTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN 215
Query: 796 GAQPNATTN-----LFC--------CATILVKNGAEIDPVTK 824
G +A L C +L+K A + V +
Sbjct: 216 GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNE 257
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 81.0 bits (199), Expect = 2e-16
Identities = 38/131 (29%), Positives = 49/131 (37%), Gaps = 4/131 (3%)
Query: 564 SGASITATT--KKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQ 621
GA + + TPL A + + LLQ A V+ G PLH A+ H
Sbjct: 222 HGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHT 281
Query: 622 NVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNAKPNAESKAGFTPLHLS 681
+A L L RGA A G PL IA + DI T L AK A +
Sbjct: 282 GLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRL--AKMREAEAAQGQAGDET 339
Query: 682 AQEGHTDMSSL 692
+ D S +
Sbjct: 340 YLDIFRDFSLM 350
Score = 79.8 bits (196), Expect = 5e-16
Identities = 31/121 (25%), Positives = 51/121 (42%)
Query: 391 ASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGA 450
++ RA L + + TPL A AN LL+NGA
Sbjct: 200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGA 259
Query: 451 SVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASI 510
+V+ + PLH A+ LG+ +A L L+ GA + A +G L I+ + ++ ++
Sbjct: 260 NVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTL 319
Query: 511 L 511
L
Sbjct: 320 L 320
Score = 79.4 bits (195), Expect = 7e-16
Identities = 34/115 (29%), Positives = 46/115 (40%), Gaps = 2/115 (1%)
Query: 275 SSHCNHVWVAKTLLDRKADPNAR--ALNGFTPLHIACKKNRYKVVELLLKYGASIAATTE 332
S H + L AD N + TPL A N E LL+ GA++
Sbjct: 207 SGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADS 266
Query: 333 SGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILL 387
+G PLH A+ +G +A L+ GA G PL +A DIV +L
Sbjct: 267 AGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLR 321
Score = 77.5 bits (190), Expect = 3e-15
Identities = 31/151 (20%), Positives = 56/151 (37%), Gaps = 2/151 (1%)
Query: 398 REDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDAR-- 455
+ S + S+ + G + + L +GA V+
Sbjct: 172 PKPSIRPRPGSLRSKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNG 231
Query: 456 AREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESG 515
+++ TPL A+ + LLQ+GA+V+ G LH + G +A + + G
Sbjct: 232 GQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRG 291
Query: 516 ASITATTKKGFTPLHLAAKYGRMKIAQMLLQ 546
A + A +G PL +A + I +L
Sbjct: 292 ADLGARDSEGRDPLTIAMETANADIVTLLRL 322
Score = 77.5 bits (190), Expect = 3e-15
Identities = 35/163 (21%), Positives = 54/163 (33%), Gaps = 2/163 (1%)
Query: 250 KADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIAC 309
P R G K S ++ + ++ G +
Sbjct: 149 TKLPEIRGRRGGRGRPRGQPPVPPKPSIRPRPGSLRSKPEPPSEDLGSLHPGALLFRASG 208
Query: 310 KKNRYKVVELLLKYGASIAATT--ESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRG 367
+ L +GA + + TPL A+ + FLLQ GA + A G
Sbjct: 209 HPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAG 268
Query: 368 ETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRL 410
PLH A T + + L+ GA + AR E + PL +A
Sbjct: 269 RGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMET 311
Score = 76.4 bits (187), Expect = 6e-15
Identities = 36/154 (23%), Positives = 50/154 (32%), Gaps = 28/154 (18%)
Query: 329 ATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATV--RGETPLHLAARANQTDIVRIL 386
+ G + + L GA + TPL A AN L
Sbjct: 195 GSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFL 254
Query: 387 LRNGASVDARAREDQTPLHVASRLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILL 446
L+NGA+V+ G PLH A T + + L
Sbjct: 255 LQNGANVNQAD--------------------------SAGRGPLHHATILGHTGLACLFL 288
Query: 447 RNGASVDARAREDQTPLHVASRLGNGDIASLLLQ 480
+ GA + AR E + PL +A N DI +LL
Sbjct: 289 KRGADLGARDSEGRDPLTIAMETANADIVTLLRL 322
Score = 72.9 bits (178), Expect = 8e-14
Identities = 32/128 (25%), Positives = 42/128 (32%), Gaps = 10/128 (7%)
Query: 231 LHVASHCGHVRVAKTLLDRKADPNAR--ALNGFTPLHIACKKNRYKSSHCNHVWVAKTLL 288
+ H + L AD N + TPL A N + + LL
Sbjct: 204 FRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAAN--------SLLACEFLL 255
Query: 289 DRKADPNARALNGFTPLHIACKKNRYKVVELLLKYGASIAATTESGLTPLHVASFMGCMN 348
A+ N G PLH A + L LK GA + A G PL +A +
Sbjct: 256 QNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANAD 315
Query: 349 IAIFLLQA 356
I L A
Sbjct: 316 IVTLLRLA 323
Score = 71.4 bits (174), Expect = 3e-13
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Query: 81 LVDNGATINVQ--SLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITPLHVACKW 138
+ +GA +N + TPL A N +LL G N A PLH A
Sbjct: 219 ALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL 278
Query: 139 GKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 180
G + L + +GA++ A+ +G PL A + + +++ +L
Sbjct: 279 GHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 71.0 bits (173), Expect = 4e-13
Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 3/119 (2%)
Query: 98 PLYMAAQENHDGVVRYLLSKGG---NQTLATEHNITPLHVACKWGKVAMVELLISKGANI 154
L+ A+ G N + N TPL A + E L+ GAN+
Sbjct: 202 LLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV 261
Query: 155 EAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVL 213
G PLH A GH + + +++GA L ++ G PL +A + + +L
Sbjct: 262 NQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 68.3 bits (166), Expect = 3e-12
Identities = 31/141 (21%), Positives = 53/141 (37%), Gaps = 2/141 (1%)
Query: 662 EYNAKPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQ--AKNGLTPLHLCAQEDK 719
E ++ G S + + HGA V+ ++ TPL +
Sbjct: 188 EPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANS 247
Query: 720 VNVATITMFNGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQ 779
+ + NGA ++ AG PLH A+ G + ++ GA++ A + G PL
Sbjct: 248 LLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTI 307
Query: 780 ASQQGRVLIIDLLLGAGAQPN 800
A + I+ LL A +
Sbjct: 308 AMETANADIVTLLRLAKMREA 328
Score = 66.3 bits (161), Expect = 1e-11
Identities = 30/120 (25%), Positives = 48/120 (40%), Gaps = 2/120 (1%)
Query: 608 GVTPLHVASHYDHQNVALLLLDRGASPHAV--AKNGYTPLHIAAKKNQMDIATTLLEYNA 665
G + H L GA + V ++ TPL A N + LL+ A
Sbjct: 200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGA 259
Query: 666 KPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATI 725
N AG PLH + GHT ++ L ++ GA + + G PL + + ++ T+
Sbjct: 260 NVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTL 319
Score = 65.2 bits (158), Expect = 3e-11
Identities = 25/96 (26%), Positives = 40/96 (41%)
Query: 598 DAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIA 657
D + G++ TPL A+ + LL GA+ + G PLH A +A
Sbjct: 225 DVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLA 284
Query: 658 TTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLL 693
L+ A A G PL ++ + + D+ +LL
Sbjct: 285 CLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 64.8 bits (157), Expect = 3e-11
Identities = 28/110 (25%), Positives = 43/110 (39%), Gaps = 2/110 (1%)
Query: 695 EHGATVSHQAKNGLTPLHLCAQEDKVNVATITMFNGAEIDPVT--KAGFTPLHIASHFGQ 752
E + G + + +GA+++ V + TPL A+
Sbjct: 188 EPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANS 247
Query: 753 LNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNAT 802
L +L++NGANVN + G PLH A+ G + L L GA A
Sbjct: 248 LLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGAR 297
Score = 63.6 bits (154), Expect = 8e-11
Identities = 36/176 (20%), Positives = 51/176 (28%), Gaps = 10/176 (5%)
Query: 148 ISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHE 207
I + R + + E + G +
Sbjct: 154 IRGRRGGRGRPRGQPPVPPKPSIRPRPGSLRSKPEPPSEDLGSLHPGALLFRASGHPPSL 213
Query: 208 AATRVLIYHGAGVDEITVDY--LTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLH 265
+ HGA V+ + T L A+ + + LL A+ N G PLH
Sbjct: 214 PTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLH 273
Query: 266 IACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVELLL 321
A H +A L R AD AR G PL IA + +V LL
Sbjct: 274 HATI--------LGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLR 321
Score = 56.3 bits (135), Expect = 2e-08
Identities = 21/105 (20%), Positives = 39/105 (37%), Gaps = 2/105 (1%)
Query: 146 LLISKGANIEAKT--RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMASQ 203
++ GA++ +D TPL A + + L++ GA + G PLH A+
Sbjct: 218 DALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATI 277
Query: 204 GDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLD 248
H + + GA + + L +A + + L
Sbjct: 278 LGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRL 322
Score = 52.1 bits (124), Expect = 4e-07
Identities = 20/78 (25%), Positives = 30/78 (38%)
Query: 70 EATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNI 129
A + L+ NGA +N G PL+ A H G+ L +G +
Sbjct: 243 TAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGR 302
Query: 130 TPLHVACKWGKVAMVELL 147
PL +A + +V LL
Sbjct: 303 DPLTIAMETANADIVTLL 320
Score = 40.9 bits (95), Expect = 0.001
Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 15/92 (16%)
Query: 744 LHIASHFGQLNMVRYLVENGANVNATTNL--GYTPLHQASQQGRVLIIDLLLGAGAQPNA 801
+ H L + + +GA+VN TPL QA+ +L + LL GA N
Sbjct: 204 FRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQ 263
Query: 802 TTNLFC-------------CATILVKNGAEID 820
+ A + +K GA++
Sbjct: 264 ADSAGRGPLHHATILGHTGLACLFLKRGADLG 295
Score = 37.5 bits (86), Expect = 0.014
Identities = 17/105 (16%), Positives = 36/105 (34%), Gaps = 7/105 (6%)
Query: 24 PALHIAAKKDDCKAAALLLEVSFSNTKLEVSLSNTKLEVSLSNTKFEATGQEEVAKILVD 83
L A + A LL+ + + + S + + + G +A + +
Sbjct: 237 TPLIQATAANSLLACEFLLQ---NGANVNQADSAGRGPLHHA----TILGHTGLACLFLK 289
Query: 84 NGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHN 128
GA + + G PL +A + + +V L + A +
Sbjct: 290 RGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQ 334
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 73.8 bits (181), Expect = 8e-14
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 130 TPLHVACKW---GKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAA 186
LH+A K + +V+ +I G +++AK DG T LH AA + + +L++ A
Sbjct: 173 LVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRAL 232
Query: 187 LYSKTKNGLAPLHMASQGDHEAATRVL 213
+ + + G L +A + H+ +L
Sbjct: 233 VGTVNEAGETALDIARKKHHKECEELL 259
Score = 73.4 bits (180), Expect = 1e-13
Identities = 36/141 (25%), Positives = 58/141 (41%), Gaps = 9/141 (6%)
Query: 410 LRRFSSASQSALTRV-RGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASR 468
RR + Q T + + L A AN D + L A LH+A +
Sbjct: 126 ARRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEE-----LVLHLAVK 180
Query: 469 LGNGD---IASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKG 525
+ N + ++Q+G +DA DG TALH +A Q + +L + A + + G
Sbjct: 181 VANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAG 240
Query: 526 FTPLHLAAKYGRMKIAQMLLQ 546
T L +A K + ++L Q
Sbjct: 241 ETALDIARKKHHKECEELLEQ 261
Score = 68.8 bits (168), Expect = 3e-12
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 332 ESGLTPLHVASFM---GCMNIAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLR 388
LH+A + + + F++Q G D G T LH AA NQ D +++LL+
Sbjct: 169 APEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLK 228
Query: 389 NGASVDARAREDQTPLHVASRLR 411
A V +T L +A +
Sbjct: 229 GRALVGTVNEAGETALDIARKKH 251
Score = 66.5 bits (162), Expect = 1e-11
Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 9/110 (8%)
Query: 300 NGFTPLHIACKKNRYK---VVELLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQA 356
LH+A K +V+ +++ G + A G T LH A+ + LL+
Sbjct: 170 PEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG 229
Query: 357 GAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHV 406
A T GET L +A + + + +L + A+A PLHV
Sbjct: 230 RALVGTVNEAGETALDIARKKHHKECEELLEQ------AQAGTFAFPLHV 273
Score = 64.2 bits (156), Expect = 8e-11
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 573 KKGFTPLHLA---AKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLD 629
LHLA A + + ++Q +D++ +G T LH A+ Y+ + LLL
Sbjct: 169 APEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLK 228
Query: 630 RGASPHAVAKNGYTPLHIAAKKNQMDIATTL 660
A V + G T L IA KK+ + L
Sbjct: 229 GRALVGTVNEAGETALDIARKKHHKECEELL 259
Score = 63.8 bits (155), Expect = 1e-10
Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 5/98 (5%)
Query: 259 NGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVE 318
LH+A K S + ++ +A+A +G T LH A N+ ++
Sbjct: 170 PEELVLHLAVKVANQASLP-----LVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLK 224
Query: 319 LLLKYGASIAATTESGLTPLHVASFMGCMNIAIFLLQA 356
LLLK A + E+G T L +A L QA
Sbjct: 225 LLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQA 262
Score = 63.0 bits (153), Expect = 2e-10
Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 3/102 (2%)
Query: 738 KAGFTPLHIA---SHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLG 794
LH+A ++ L +V ++++NG +++A G T LH A+ + + LLL
Sbjct: 169 APEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLK 228
Query: 795 AGAQPNATTNLFCCATILVKNGAEIDPVTKLSDEHEKSIDLP 836
A A + + + L + P
Sbjct: 229 GRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFP 270
Score = 58.8 bits (142), Expect = 5e-09
Identities = 22/116 (18%), Positives = 43/116 (37%), Gaps = 4/116 (3%)
Query: 672 KAGFTPLHLS---AQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATITMF 728
LHL+ A + + +I++G + +A +G T LH A ++ + + +
Sbjct: 169 APEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLK 228
Query: 729 NGAEIDPVTKAGFTPLHIASHFGQLNMVRYLVE-NGANVNATTNLGYTPLHQASQQ 783
A + V +AG T L IA L + ++ Y+ +
Sbjct: 229 GRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFPLHVDYSWVISTENL 284
Score = 58.8 bits (142), Expect = 5e-09
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
Query: 600 PVDSQGKNGVTPLHVA-SHYDHQNVAL--LLLDRGASPHAVAKNGYTPLHIAAKKNQMDI 656
P LH+A + ++ L ++ G A A +G T LH AA NQ D
Sbjct: 163 PGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDC 222
Query: 657 ATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLL 693
LL+ A ++AG T L ++ ++ H + LL
Sbjct: 223 LKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 259
Score = 58.0 bits (140), Expect = 8e-09
Identities = 27/120 (22%), Positives = 46/120 (38%), Gaps = 13/120 (10%)
Query: 688 DMSSLL--IEHGATVS------HQAKNGLTPLHL-CAQEDKVNVATITMF---NGAEIDP 735
D+ S+L +G LHL ++ ++ + F NG +D
Sbjct: 144 DLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLP-LVDFIIQNGGHLDA 202
Query: 736 VTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGA 795
G T LH A+ + Q + ++ L++ A V G T L A ++ +LL A
Sbjct: 203 KAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQA 262
Score = 54.9 bits (132), Expect = 7e-08
Identities = 29/129 (22%), Positives = 45/129 (34%), Gaps = 26/129 (20%)
Query: 502 EGQDEVASILTESGASITATTKKGFTPLHLA---AKYGRMKIAQMLLQKDAPVDSQGKVA 558
GQD + + LHLA A + + ++Q
Sbjct: 154 NGQDFGQPLPGPDAQA------PEELVLHLAVKVANQASLPLVDFIIQ------------ 195
Query: 559 SILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHY 618
+G + A G T LH AA Y + ++LL+ A V + + G T L +A
Sbjct: 196 -----NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKK 250
Query: 619 DHQNVALLL 627
H+ LL
Sbjct: 251 HHKECEELL 259
Score = 53.7 bits (129), Expect = 2e-07
Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 94 NGFTPLYMAAQENHDG---VVRYLLSKGGNQTLATEHNITPLHVACKWGKVAMVELLISK 150
L++A + + +V +++ GG+ T LH A + + ++LL+
Sbjct: 170 PEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG 229
Query: 151 GANIEAKTRDGLTPLHCAARSGHDNVIDIL 180
A + G T L A + H ++L
Sbjct: 230 RALVGTVNEAGETALDIARKKHHKECEELL 259
Score = 51.8 bits (124), Expect = 7e-07
Identities = 26/143 (18%), Positives = 46/143 (32%), Gaps = 20/143 (13%)
Query: 583 AKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHVASHYDHQNVALLLLDRGASPHAV----- 637
AKY + ++ P + L A L G
Sbjct: 118 AKY----VEHRFARRCTPEPQR-------LWTAICNRDLLSVLEAFANGQDFGQPLPGPD 166
Query: 638 -AKNGYTPLHIA---AKKNQMDIATTLLEYNAKPNAESKAGFTPLHLSAQEGHTDMSSLL 693
LH+A A + + + +++ +A++ G T LH +A D LL
Sbjct: 167 AQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLL 226
Query: 694 IEHGATVSHQAKNGLTPLHLCAQ 716
++ A V + G T L + +
Sbjct: 227 LKGRALVGTVNEAGETALDIARK 249
Score = 51.4 bits (123), Expect = 7e-07
Identities = 22/90 (24%), Positives = 30/90 (33%), Gaps = 6/90 (6%)
Query: 192 KNGLAPLHMA---SQGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLD 248
LH+A + +I +G +D D TALH A+ K LL
Sbjct: 169 APEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLK 228
Query: 249 RKADPNARALNGFTPLHIACKKNRYKSSHC 278
+A G T L IA + C
Sbjct: 229 GRALVGTVNEAGETALDIA---RKKHHKEC 255
Score = 48.0 bits (114), Expect = 1e-05
Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 3/90 (3%)
Query: 160 DGLTPLHCAARSGHDN---VIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYH 216
LH A + + ++D +I+ G L +K +G LH A+ + ++L+
Sbjct: 170 PEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG 229
Query: 217 GAGVDEITVDYLTALHVASHCGHVRVAKTL 246
A V + TAL +A H + L
Sbjct: 230 RALVGTVNEAGETALDIARKKHHKECEELL 259
Score = 34.5 bits (79), Expect = 0.16
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 6/68 (8%)
Query: 72 TGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITP 131
Q + K+L+ A + + G T L +A +++H LL + T A P
Sbjct: 217 YNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEE-LLEQAQAGTFA-----FP 270
Query: 132 LHVACKWG 139
LHV W
Sbjct: 271 LHVDYSWV 278
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.8 bits (139), Expect = 1e-08
Identities = 110/674 (16%), Positives = 187/674 (27%), Gaps = 245/674 (36%)
Query: 111 VRYL-LSKGGNQTLATEHNI---TPLHVACKWGKVAMVELLISKGANIEAKTRDGL---- 162
R L LS G + EH + T +L + T +G
Sbjct: 6 TRPLTLSHG-----SLEHVLLVPTASFFIAS-------QLQEQFNKILPEPT-EGFAADD 52
Query: 163 ---TPLHCAAR-SGHDNVIDILIEKGAALYSKTKNGLAPLHMA------SQGD-HEAATR 211
TP + G+ + L+E + L D H A +
Sbjct: 53 EPTTPAELVGKFLGY---VSSLVEPSKV--GQFDQVLNLCLTEFENCYLEGNDIHALAAK 107
Query: 212 VLIYHGAGVD---EITVDYLTALHVASHCGHVRVAKTLLDRKADPNAR--ALNG------ 260
+L + + E+ +Y+TA +A + L + NA+ A+ G
Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTD 167
Query: 261 --FTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKKNRYKVVE 318
F L ++ Y++ H + L+ A+ L+ + +K + +
Sbjct: 168 DYFEEL-----RDLYQTYHV----LVGDLIKFSAE----TLSELIRTTLDAEKVFTQGLN 214
Query: 319 LL--LK---------YGASIAATTESGLTPLHVASFMGCMNIAIFLLQAGAAPDTATVRG 367
+L L+ Y SI S PL I ++Q TA + G
Sbjct: 215 ILEWLENPSNTPDKDYLLSIPI---SC--PL------------IGVIQLAHYVVTAKLLG 257
Query: 368 ETPLHL---------------AARA------------NQTDIVRILLRNGASVDARARED 400
TP L A A + + +L G R E
Sbjct: 258 FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIG----VRCYE- 312
Query: 401 QTPLHVASRLRRFSSASQSALTR----------VRGETPLHLAARANQT-------DIVR 443
S + +L + T + N+T V
Sbjct: 313 -----AYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVE 367
Query: 444 ILLRNGASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALH-ISAKE 502
I L NGA V S G SL +G + L A
Sbjct: 368 ISLVNGA--------KN---LVVS----GPPQSL---YGLN---------LTLRKAKAPS 400
Query: 503 GQDEVASILTESGASITATTKK-----GF----TPLHLAAKYGRMKIAQMLLQKDAPVD- 552
G D+ + I + +K F +P H + + A L+ KD +
Sbjct: 401 GLDQ---------SRIPFSERKLKFSNRFLPVASPFH--SHL--LVPASDLINKDLVKNN 447
Query: 553 -----SQGKVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKN 607
++ T G+ + + +I +++ PV +
Sbjct: 448 VSFNAKDIQIPVYDTFDGSDL-RVLSGSISE----------RIVDCIIRL--PVKWETTT 494
Query: 608 GVTPLHVASHYDHQNVALLLLDRGASPHAVAKNGYTPLHIAAKKN------QMDIATTLL 661
H+ LD G P + G L +N ++ +A TL
Sbjct: 495 QFKATHI-------------LDFG--PGGAS--GLGVL---THRNKDGTGVRVIVAGTL- 533
Query: 662 EYNAKPNAESKAGF 675
+ P+ + GF
Sbjct: 534 --DINPDDD--YGF 543
Score = 52.4 bits (125), Expect = 7e-07
Identities = 65/326 (19%), Positives = 106/326 (32%), Gaps = 102/326 (31%)
Query: 203 QGDHEAATRVLIYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFT 262
QG E G G+D Y T+ + A+ + +R AD + + GF+
Sbjct: 1624 QGSQEQ--------GMGMDL----YKTS----------KAAQDVWNR-ADNHFKDTYGFS 1660
Query: 263 PLHIACKKN-----------RYKSSHCNHVWVAKTLLDRKADPNARALNGFTPLHIACKK 311
L I N + K N+ + + + D + F ++
Sbjct: 1661 ILDI-VINNPVNLTIHFGGEKGKRIRENY---SAMIFETIVDGKLKTEKIFKEINEHSTS 1716
Query: 312 NRYKVVELLLKYGASIAATTESGLT-PLHVASFMGCMNIAIF--LLQAGAAPDTATVRGE 368
++ + LL T+ T P A M A F L G P AT G
Sbjct: 1717 YTFRSEKGLLS-------ATQF--TQP---ALT--LMEKAAFEDLKSKGLIPADATFAG- 1761
Query: 369 TPLH-------LAARANQ---TDIVRIL-LRNGASVDARAREDQT-----------PLHV 406
H LA+ A+ +V ++ R G ++ D+ P V
Sbjct: 1762 ---HSLGEYAALASLADVMSIESLVEVVFYR-GMTMQVAVPRDELGRSNYGMIAINPGRV 1817
Query: 407 ASRLRRFSSASQSALTRVRGETPLHLAARAN------QTDIVRILLRNGASVDARAREDQ 460
A+ + A Q + RV T + N Q V A+ D RA +
Sbjct: 1818 AASFSQ--EALQYVVERVGKRTGWLVEI-VNYNVENQQ--YV-------AAGDLRALDTV 1865
Query: 461 TPLHVASRLGNGDIASLLLQHGASVD 486
T +V + + I + LQ S++
Sbjct: 1866 T--NVLNFIKLQKIDIIELQKSLSLE 1889
Score = 43.9 bits (103), Expect = 2e-04
Identities = 49/268 (18%), Positives = 78/268 (29%), Gaps = 77/268 (28%)
Query: 490 KDGYTALHISAKEGQDEVASILTES-GASITATTKKGFTPL--HLAAKYGRMKIAQ--ML 544
D Y +A++ + + ++ G SI L H + G+ +I +
Sbjct: 1633 MDLYKT-SKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGK-RIRENYSA 1690
Query: 545 LQKDAPVDSQGKVASI---LTESGASIT---------AT--T----------------KK 574
+ + VD + K I + E S T AT T K
Sbjct: 1691 MIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSK 1750
Query: 575 GFTPL------H-------LAAKYGRMKIAQ---------MLLQKDAPVDSQGKN----- 607
G P H LA+ M I M +Q P D G++
Sbjct: 1751 GLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMI 1810
Query: 608 GVTPLHVASHYDHQNVALLLLDRGASPHA-----VAKNGY-TPLH---IAAKKNQMDIAT 658
+ P VA+ + + AL + + N Y A +D T
Sbjct: 1811 AINPGRVAASFSQE--ALQYVVERVGKRTGWLVEIV-N-YNVENQQYVAAGDLRALDTVT 1866
Query: 659 TLLEYNAKPNAESKAGFTPLHLSAQEGH 686
+L + + L L EGH
Sbjct: 1867 NVLNFIKLQKIDIIELQKSLSLEEVEGH 1894
Score = 36.6 bits (84), Expect = 0.039
Identities = 48/272 (17%), Positives = 74/272 (27%), Gaps = 99/272 (36%)
Query: 24 PALHIAAKKDDCKAAALLLEVSFSNTKL------EVSLSNTKLEVSLSNTKFEATGQEEV 77
P L I+ + + V+ +N+ L E+SL N +G
Sbjct: 337 PMLSIS----NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA-------KNLVVSG---- 381
Query: 78 AKILVDNGATINVQSLNGFTPLY--MAAQENHD------------GVVRYLLSKGGNQTL 123
QSL G A D R+L
Sbjct: 382 -----------PPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL--------- 421
Query: 124 ATEHNIT-PLHVACKWGKVA---MVELLISKGANIEAK--------TRDGLTPLHCAARS 171
+ P H A + + L+ + AK T DG R
Sbjct: 422 ----PVASPFH--SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL-----RV 470
Query: 172 GHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAATRVLIYHGAGVDEITVDYLTAL 231
++ + +++ + P+ + AT +L + G G + LT
Sbjct: 471 LSGSISERIVD---CIIRL------PVKWETT-TQFKATHILDF-GPGGAS-GLGVLTH- 517
Query: 232 HVASHCGHVRV--AKTLLDRKADPNARALNGF 261
G VRV A TL D N GF
Sbjct: 518 RNKDGTG-VRVIVAGTL-----DINPDDDYGF 543
Score = 31.6 bits (71), Expect = 1.6
Identities = 42/237 (17%), Positives = 63/237 (26%), Gaps = 82/237 (34%)
Query: 643 TPLHIAAKKNQMDIATTLLEYNAKPNAESKAG------------FTPLHLSAQEGHTDMS 690
TP + K L Y + SK G F +L + H +
Sbjct: 56 TPAELVGK---------FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAA 106
Query: 691 SLLIEHGATVS-------------HQAKNGLTPLH---L--CAQEDKVNVATITMFNG-- 730
LL E+ T+ AK L E + I F G
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI--FGGQG 164
Query: 731 ---------AEI---------DPVTKAG-------FTPLHIASHFGQ-LNMVRYLVENGA 764
++ D + + T L F Q LN++ +L
Sbjct: 165 NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL----E 220
Query: 765 NVNATTNLGYT-------PLHQASQQGRVLIIDLLLGAGAQPNATTNLFCCATILVK 814
N + T + Y PL Q ++ LL G P + AT +
Sbjct: 221 NPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLL--GFTPGELRSYLKGATGHSQ 275
Score = 29.6 bits (66), Expect = 5.1
Identities = 56/317 (17%), Positives = 95/317 (29%), Gaps = 101/317 (31%)
Query: 29 AAKK--DDCKAAALLLEV-SFSNTKLEVSLSN-TKLEVSLSNTKFEATGQ---EEVAKIL 81
AA+ + +A + FS L++ ++N L + K G+ E + ++
Sbjct: 1641 AAQDVWN--RADNHFKDTYGFS--ILDIVINNPVNLTIHFGGEK----GKRIRENYSAMI 1692
Query: 82 VDNGATINVQSLNGFTPLYMAAQE---NHDGVVRYLLSKGGNQT-------LATEHNITP 131
+ +++ F + + + + LL + T E
Sbjct: 1693 FETIVDGKLKTEKIFKEINEHSTSYTFRSE---KGLL----SATQFTQPALTLME----- 1740
Query: 132 LHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCA-ARSGHDNVIDILIEKG--AALY 188
A E L SK GL P A GH L G AAL
Sbjct: 1741 ---------KAAFEDLKSK----------GLIPADATFA--GHS-----L---GEYAALA 1771
Query: 189 SKTKNGLAPLHMASQGDHEAATRVLIYHG-AGVDEITVDYLTALHVA-SHCGHVRVAKTL 246
S + + E+ V+ Y G + D L + RVA +
Sbjct: 1772 SLA--DVMSI--------ESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASF 1821
Query: 247 ----LDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALNGF 302
L + + + I N Y + +V A L RAL+
Sbjct: 1822 SQEALQYVVERVGKRTGWL--VEIV---N-YNVENQQYV-AAGDL---------RALDTV 1865
Query: 303 TPLHIACKKNRYKVVEL 319
T + K + ++EL
Sbjct: 1866 TNVLNFIKLQKIDIIEL 1882
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 55.6 bits (133), Expect = 5e-08
Identities = 85/677 (12%), Positives = 189/677 (27%), Gaps = 194/677 (28%)
Query: 1 MQQGHDRVVAVLLENDTKGKVKLPALHIAAKKD-DCKAAALLLEVSFSNTKLE--VSLSN 57
Q + +++V + A + DCK + + S +++ + +
Sbjct: 14 HQYQYKDILSVFED--------------AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD 59
Query: 58 TKLEVSLSNTKFEATGQEEVAKILVDNGATINVQSLNGFTPLYMAAQENHDGVVRYLLSK 117
+ QEE+ + V+ IN + L +P+ ++ Y+ +
Sbjct: 60 AVSGTLRLFWTLLSK-QEEMVQKFVEEVLRINYKFL--MSPIKTEQRQPSMMTRMYIEQR 116
Query: 118 GGNQTLATEHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLH----C------ 167
++ +V+ ++ L + A +E + + +
Sbjct: 117 --DRLYNDNQVFAKYNVS----RLQPYLKL--RQALLELRPAKNVL-IDGVLGSGKTWVA 167
Query: 168 --AARS----------------GHDNVIDILIEKGAALYSKTKNGLAPLHMASQGDHEAA 209
S + N + ++E L + S+ DH +
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT-----SRSDHSSN 222
Query: 210 TRVLIYHGAGVDEITV---DYLTAL----HVAS---------HCGHVRVAKTLLDRKADP 253
++ I+ + Y L +V + C K LL +
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC------KILLTTRFKQ 276
Query: 254 NARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKAD------PNARALNGFTPLHI 307
L+ T HI+ + + K+LL + D P L P +
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDE----VKSLLLKYLDCRPQDLPR-EVLTT-NPRRL 330
Query: 308 A----------CKKNRYKVVELLLKYGASIAATTESGLTP-LHVASFMGCMNIAIFLLQA 356
+ + +K V K I ++ L P + F ++F
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCD-KLTTIIESSLNV-LEPAEYRKMFDRL---SVF---- 381
Query: 357 GAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASRLRRFSSA 416
P +A + P T ++ ++ + + V ++L ++S
Sbjct: 382 ---PPSAHI----P---------TILLSLIWFDV--------IKSDVMVVVNKLHKYS-- 415
Query: 417 SQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARA-REDQTPLHVASRLGNGDIA 475
L + + + I ++ + E++ LH S + + +I
Sbjct: 416 ---------------LVEKQPKESTISI---PSIYLELKVKLENEYALH-RSIVDHYNIP 456
Query: 476 SLLLQHGASVDAPTKDGYTALHIS---AKEGQDEVASILTES-------GASITATTKKG 525
P D Y HI E ++ I +
Sbjct: 457 KTFDSDDLI--PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW 514
Query: 526 FTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLH----L 581
+ ++K + + + P + V +IL F P +
Sbjct: 515 NASGSILNTLQQLKFYKPYICDNDPKYER-LVNAILD-------------FLPKIEENLI 560
Query: 582 AAKYGRMKIAQMLLQKD 598
+KY + ++ L +
Sbjct: 561 CSKY--TDLLRIALMAE 575
Score = 49.1 bits (116), Expect = 7e-06
Identities = 104/739 (14%), Positives = 199/739 (26%), Gaps = 259/739 (35%)
Query: 199 HM---ASQGDHEAATRVLIYHGAGVDEITV----DYLTALHVASHCGHV----------- 240
HM + ++ + ++ A VD D ++ H+
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 241 RVAKTLLDRKADPNARALNGFTPLHIACKKNRYKSSHCNHVWVAKTLLDRKADPNARALN 300
R+ TLL ++ + + + + N YK ++ + K + ++
Sbjct: 66 RLFWTLLSKQEEMVQKFVEE------VLRIN-YK-------FLMSPI---KTEQRQPSMM 108
Query: 301 GFTPLHIACKKNRYKVVELLLKYGASIA---ATTESGLTPLHVASF-----MG-----CM 347
T ++I + Y ++ KY S L L A + +
Sbjct: 109 --TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV 166
Query: 348 NIAIFLLQAGAAPDTATVRGETP-----LHLAARANQTDIVRIL--LRNGASVDARARED 400
A + V+ + L+L + ++ +L L + +R D
Sbjct: 167 --------ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 401 QT---PLHVAS---RLRRFSSASQSA-----LTRVRGETPLHLAARANQTDIVRILL--R 447
+ L + S LRR + L V+ A +ILL R
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ--NAKAWNAFNLS---CKILLTTR 273
Query: 448 NGASVDARAREDQTPL---HVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQ 504
D + T + H + L ++ SLLL+ L ++
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK--------------YLDCRPQDLP 319
Query: 505 DEVASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQG-------KV 557
EV + P L+ + IA+ + +D K+
Sbjct: 320 REVLTTN----------------PRRLS-----I-IAESI--RDGLATWDNWKHVNCDKL 355
Query: 558 ASILTESGASITATTKKGFTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKNGVTPLHV--- 614
+I+ +S+ P + R+ + A + P +
Sbjct: 356 TTII---ESSLNV-----LEPAEYRKMFDRLSV----FPPSAHI---------PTILLSL 394
Query: 615 ----ASHYDHQNVA-----LLLLDRGASPHAVAKNGYTPLHIAAKKNQMDIATTLLEYNA 665
D V L+++ K + I LE
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQP------KESTISIP--------SI---YLELKV 437
Query: 666 KPNAESKAGFTPLHLSAQEGHTDMSSLLIEHGATVSHQAKNGLTPLHLCAQEDKVNVATI 725
K E LH +++H + L P +L D+
Sbjct: 438 KLENEYA-----LH-----------RSIVDHYNIPKTFDSDDLIPPYL----DQY----- 472
Query: 726 TMFNGAEIDPVTKAGFTPLHIASHFGQLNMVR--------YL----VEN-----GANVNA 768
++ HI H + +L +E NA
Sbjct: 473 -FYS---------------HIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNA 516
Query: 769 TTNL-----------GYTPLHQASQQGRV-LIIDLLLGAGAQPNATTNLFCCA-TILVKN 815
+ ++ Y + + V I+D L P NL C T L++
Sbjct: 517 SGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL------PKIEENLICSKYTDLLRI 570
Query: 816 GAEIDPVTKLSDEHEKSID 834
A + + +E K +
Sbjct: 571 -ALMAEDEAIFEEAHKQVQ 588
Score = 48.7 bits (115), Expect = 8e-06
Identities = 70/472 (14%), Positives = 131/472 (27%), Gaps = 147/472 (31%)
Query: 4 GHDRVVAVLLENDTKGKVKLPALHIAAKKDDCK----AAALLLEVSFSNTKLEVSLSNTK 59
+ +LE L L + ++ + L + +L L +
Sbjct: 190 KNCNSPETVLEM-------LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 60 LEVSL------SNTK-FEA----------TGQEEVAKILVDNGATINVQSLN----GFTP 98
E L N K + A T ++V L + AT SL+ TP
Sbjct: 243 YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL--SAATTTHISLDHHSMTLTP 300
Query: 99 LYMAAQENHDGVVRYLLSKGGNQTLATE-HNITPLHVACKWGKVAMVELLISKGANIEAK 157
E +++YL + Q L E P ++ +I+
Sbjct: 301 -----DEVKSLLLKYLDCR--PQDLPREVLTTNPRRLS-----------IIA------ES 336
Query: 158 TRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKNGLAPLHMAS--------QGDHEAA 209
RDGL A DN + +K + + N L P
Sbjct: 337 IRDGL------ATW--DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388
Query: 210 TRVL-IYHGAGVDEITVDYLTALHVASHCGHVRVAKTLLDRKADPNARALNGFTPLHIAC 268
T +L + + + + LH +L++++ + ++ L +
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLH----------KYSLVEKQPKESTISIPSIY-LELKV 437
Query: 269 KKNRYKSSHCNHVWVAKTLLDRKADPNARALNGFTPL--------HIA---CKKNRYKVV 317
K + H ++++D P + P HI + +
Sbjct: 438 KLENEYALH-------RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM 490
Query: 318 ELL----LKYG--------ASIAATTESGLTPL-------------HVASFMGCMN-IAI 351
L L + S A + + + +N I
Sbjct: 491 TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550
Query: 352 FLLQAGAAPDTATVRGETPLHLAARANQTDIVRILL--RNGASVDARAREDQ 401
FL + E L + TD++RI L + A + ++ Q
Sbjct: 551 FLPKI-----------EENLI---CSKYTDLLRIALMAEDEAIFEEAHKQVQ 588
>3hz7_A Uncharacterized protein; alpha-beta protein, structural genomics,
PSI-2, protein structure initiative; 2.00A
{Desulfitobacterium hafniense}
Length = 87
Score = 30.5 bits (69), Expect = 0.40
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 76 EVAKILVDN-GATINVQSLNGFTPLYMAAQENHDGVVRYLLSKGGNQTLATEHNITP 131
V +LVDN + N+Q + E +GV+ + G + EH+
Sbjct: 30 GVVTVLVDNDISRQNLQKMAEGMGYQSEYLEKDNGVIEVTIVAGEGCAVELEHHHHH 86
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide),
DNA-binding regulatory complex (regulatory
protein-peptide) complex; HET: TRP; 1.30A {Escherichia
coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R*
1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R
2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Length = 101
Score = 28.7 bits (64), Expect = 2.4
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 526 FTPLHLAAKYGRMKIAQMLLQKDAPVDSQGKVASILTESGASITATTKKGFTPLHLAAKY 585
TP A R++I + LL+ + SQ ++ + L A+IT +G L A
Sbjct: 36 LTPDEREALGTRVRIIEELLRGEM---SQRELKNELGAGIATIT----RGSNSLKAAPVE 88
Query: 586 GRMKIAQMLLQKD 598
R + ++LL+ D
Sbjct: 89 LRQWLEEVLLKSD 101
>3itw_A Protein TIOX; bleomycin resistance fold, bisintercalator,
solvent-exposed residue, thiocoraline, protein binding,
peptide binding Pro; 2.15A {Micromonospora SP}
Length = 137
Score = 27.9 bits (62), Expect = 7.2
Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 3/71 (4%)
Query: 449 GASVDARAREDQTPLHVASRLGNGDIASLLLQHGASVDAPTKDGYTALHISAK-EGQDEV 507
G + R T H G G + ++ + G G+T + DE
Sbjct: 25 GFRLLLRQPAIGTIRHADLDTGGGIV--MVRRTGEPYTVSCAGGHTCKQVIVWVSDVDEH 82
Query: 508 ASILTESGASI 518
T +GA I
Sbjct: 83 FMRSTAAGADI 93
>2x3c_A Toxic extracellular endopeptidase; hydrolase; 1.99A {Aeromonas
salmonicida subsp} PDB: 2x3a_A 2x3b_A
Length = 343
Score = 28.4 bits (62), Expect = 9.1
Identities = 34/179 (18%), Positives = 53/179 (29%), Gaps = 9/179 (5%)
Query: 349 IAIFLLQAGAAPDTATVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVAS 408
IA+ L A+P A + L L + V + L N R + Q P +
Sbjct: 7 IALLLAGVLASPLCAAGL-DAQLTLVDGSTDDVRVNLTLTNTGDKPIRLLKWQLPGSDDA 65
Query: 409 RLRRFSSASQSALTRVRGETPLHLAARANQTDIVRILLRNGASVDARAREDQTPLHVASR 468
L Q L RA TD LL+ G S+ +A + + L+ S
Sbjct: 66 PLFLVERDGQPV------SYEGALIKRAAPTDKDFQLLKAGQSLTVQA--EVSGLYDMSA 117
Query: 469 LGNGDIASLLLQHGASVDAPTKDGYTALHISAKEGQDEVASILTESGASITATTKKGFT 527
G I L A + I+ + + A+ +
Sbjct: 118 QGQYSIRYQLPARRKRPRAKQAQASESNAITLWVEGVNDERVQAKVAAAEPQAVAGSVS 176
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K,
structural genomi protein structure initiative; 2.35A
{Lactobacillus reuteri}
Length = 221
Score = 28.1 bits (63), Expect = 9.2
Identities = 14/76 (18%), Positives = 20/76 (26%), Gaps = 21/76 (27%)
Query: 534 KYGRMKIAQMLLQK------------DAPVDSQGKVASILTESGASITATTKKGFTPLHL 581
G I Q L QK + Q ++A L K +
Sbjct: 126 LKGPGIIRQHLRQKGIGESDIDDALTQFTPEVQAELAKKLAL---------KLFRRYRNQ 176
Query: 582 AAKYGRMKIAQMLLQK 597
+ K+ Q L K
Sbjct: 177 PERRREQKVQQGLTTK 192
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.130 0.370
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,216,224
Number of extensions: 771776
Number of successful extensions: 6648
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2638
Number of HSP's successfully gapped: 843
Length of query: 838
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 736
Effective length of database: 3,853,851
Effective search space: 2836434336
Effective search space used: 2836434336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.3 bits)