Query psy3312
Match_columns 189
No_of_seqs 209 out of 2014
Neff 10.0
Searched_HMMs 46136
Date Fri Aug 16 21:47:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3312.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3312hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02332 HpaX 4-hydroxyphenyl 99.8 1.4E-19 3.1E-24 145.5 13.1 136 22-187 5-140 (412)
2 PRK09556 uhpT sugar phosphate 99.8 1.2E-19 2.5E-24 148.1 7.5 135 23-187 27-166 (467)
3 COG2271 UhpC Sugar phosphate p 99.8 1.9E-19 4.2E-24 140.7 7.4 139 19-187 23-161 (448)
4 TIGR00806 rfc RFC reduced fola 99.8 8.9E-18 1.9E-22 134.6 13.7 120 38-188 39-159 (511)
5 TIGR00894 2A0114euk Na(+)-depe 99.8 6.5E-18 1.4E-22 137.6 13.1 163 19-187 13-175 (465)
6 TIGR00891 2A0112 putative sial 99.8 1.5E-17 3.3E-22 132.3 14.6 137 21-187 8-144 (405)
7 PRK10406 alpha-ketoglutarate t 99.8 1.6E-17 3.5E-22 134.2 14.9 137 23-186 20-167 (432)
8 KOG1330|consensus 99.8 3.5E-18 7.6E-23 134.9 9.4 136 23-188 31-166 (493)
9 PRK12307 putative sialic acid 99.8 3E-17 6.5E-22 132.1 14.2 137 21-187 14-150 (426)
10 TIGR01299 synapt_SV2 synaptic 99.7 2.4E-17 5.2E-22 140.0 14.0 136 21-186 163-298 (742)
11 PRK15034 nitrate/nitrite trans 99.7 3.5E-17 7.5E-22 132.3 13.6 132 24-185 33-169 (462)
12 PRK11551 putative 3-hydroxyphe 99.7 5E-17 1.1E-21 130.0 14.3 137 21-187 11-147 (406)
13 KOG2532|consensus 99.7 2E-17 4.3E-22 134.1 11.9 109 79-188 65-173 (466)
14 PRK14995 methyl viologen resis 99.7 4.1E-17 8.8E-22 134.1 13.4 135 23-187 4-139 (495)
15 PRK11663 regulatory protein Uh 99.7 2.8E-17 6E-22 133.0 12.2 136 22-187 20-155 (434)
16 PRK03545 putative arabinose tr 99.7 3.4E-17 7.3E-22 130.6 12.2 105 80-187 37-141 (390)
17 COG2814 AraJ Arabinose efflux 99.7 6.7E-17 1.5E-21 127.2 13.0 133 25-187 13-145 (394)
18 PRK10213 nepI ribonucleoside t 99.7 2.3E-16 5E-21 126.2 14.8 105 80-187 48-152 (394)
19 PRK10642 proline/glycine betai 99.7 2.4E-16 5.1E-21 129.4 15.0 136 25-187 16-162 (490)
20 PRK15075 citrate-proton sympor 99.7 1.9E-16 4.1E-21 128.1 13.9 134 23-186 13-160 (434)
21 PRK10077 xylE D-xylose transpo 99.7 9.5E-17 2.1E-21 131.0 12.1 146 23-187 10-164 (479)
22 PRK11273 glpT sn-glycerol-3-ph 99.7 1.4E-16 3E-21 129.6 12.1 139 21-187 25-164 (452)
23 PRK03893 putative sialic acid 99.7 4.4E-16 9.5E-21 127.7 15.0 136 22-187 17-152 (496)
24 PRK09952 shikimate transporter 99.7 5.9E-16 1.3E-20 125.5 15.1 146 15-187 12-169 (438)
25 PLN00028 nitrate transmembrane 99.7 5E-16 1.1E-20 127.1 14.7 130 26-186 37-166 (476)
26 PRK09705 cynX putative cyanate 99.7 2E-16 4.4E-21 126.4 11.5 115 42-187 26-140 (393)
27 TIGR00711 efflux_EmrB drug res 99.7 3.2E-16 7E-21 127.9 12.9 131 27-187 4-134 (485)
28 TIGR00890 2A0111 Oxalate/Forma 99.7 1.1E-16 2.4E-21 125.9 9.6 126 31-187 9-134 (377)
29 TIGR00879 SP MFS transporter, 99.7 2.1E-16 4.6E-21 127.8 11.0 104 84-187 68-171 (481)
30 PRK03699 putative transporter; 99.7 4.3E-16 9.3E-21 124.5 12.4 133 23-185 5-137 (394)
31 PRK10133 L-fucose transporter; 99.7 1.2E-15 2.6E-20 123.7 14.0 129 28-186 29-160 (438)
32 PRK15403 multidrug efflux syst 99.7 1.1E-15 2.3E-20 123.1 13.2 128 30-187 21-148 (413)
33 TIGR00893 2A0114 d-galactonate 99.7 3.1E-16 6.7E-21 123.8 9.7 124 34-187 3-126 (399)
34 TIGR00895 2A0115 benzoate tran 99.7 1.5E-15 3.3E-20 120.3 13.5 135 23-187 15-149 (398)
35 PRK05122 major facilitator sup 99.7 1.1E-15 2.4E-20 122.0 12.8 107 80-186 44-155 (399)
36 TIGR00886 2A0108 nitrite extru 99.7 1.4E-15 3.1E-20 119.8 12.9 125 30-185 6-132 (366)
37 TIGR00881 2A0104 phosphoglycer 99.7 2.3E-16 4.9E-21 124.2 7.9 125 33-187 3-127 (379)
38 TIGR00903 2A0129 major facilit 99.7 6.5E-16 1.4E-20 122.6 10.5 118 39-187 5-122 (368)
39 TIGR00710 efflux_Bcr_CflA drug 99.7 1.5E-15 3.3E-20 120.2 12.5 105 80-187 33-137 (385)
40 TIGR00892 2A0113 monocarboxyla 99.7 2.7E-15 5.9E-20 122.2 14.1 136 22-188 16-152 (455)
41 PF07690 MFS_1: Major Facilita 99.7 2.1E-15 4.6E-20 117.8 12.9 126 32-187 3-129 (352)
42 PRK10091 MFS transport protein 99.7 1.4E-15 2.9E-20 121.2 11.7 127 31-187 9-135 (382)
43 PRK03633 putative MFS family t 99.7 2.4E-15 5.2E-20 119.7 12.8 128 30-187 11-138 (381)
44 PRK10504 putative transporter; 99.6 3.8E-15 8.2E-20 121.5 13.9 128 29-186 14-141 (471)
45 TIGR00887 2A0109 phosphate:H+ 99.6 5.1E-15 1.1E-19 121.9 14.2 144 22-187 13-159 (502)
46 PRK12382 putative transporter; 99.6 3E-15 6.6E-20 119.4 12.5 108 80-187 44-156 (392)
47 PRK15402 multidrug efflux syst 99.6 6.7E-15 1.4E-19 118.0 13.1 134 23-186 11-144 (406)
48 TIGR00900 2A0121 H+ Antiporter 99.6 7.7E-15 1.7E-19 115.0 11.5 108 80-187 27-136 (365)
49 PRK11195 lysophospholipid tran 99.6 1.1E-14 2.5E-19 116.4 12.4 102 80-187 31-132 (393)
50 PRK11652 emrD multidrug resist 99.6 1.5E-14 3.2E-19 115.5 13.1 105 80-187 36-140 (394)
51 COG2223 NarK Nitrate/nitrite t 99.6 1.2E-14 2.5E-19 114.1 11.4 137 23-187 12-148 (417)
52 TIGR00885 fucP L-fucose:H+ sym 99.6 1.9E-14 4E-19 115.8 12.9 130 30-186 8-137 (410)
53 TIGR00712 glpT glycerol-3-phos 99.6 9.9E-15 2.1E-19 118.3 11.3 137 23-187 25-162 (438)
54 PRK10473 multidrug efflux syst 99.6 2E-14 4.3E-19 114.7 12.8 104 80-186 31-134 (392)
55 TIGR00898 2A0119 cation transp 99.6 6.8E-15 1.5E-19 121.0 10.5 107 77-186 114-223 (505)
56 cd06174 MFS The Major Facilita 99.6 1.8E-14 4E-19 112.0 12.0 127 31-187 5-131 (352)
57 PTZ00207 hypothetical protein; 99.6 5.8E-14 1.3E-18 116.6 13.9 138 20-187 23-163 (591)
58 PRK11043 putative transporter; 99.6 7.6E-14 1.6E-18 111.6 13.4 103 80-185 34-136 (401)
59 PRK10054 putative transporter; 99.5 1.1E-13 2.4E-18 110.8 13.0 105 80-187 36-140 (395)
60 TIGR00805 oat sodium-independe 99.5 8.7E-15 1.9E-19 123.4 6.7 131 30-187 38-216 (633)
61 PRK09874 drug efflux system pr 99.5 3.7E-13 8.1E-18 107.6 15.3 125 32-187 21-150 (408)
62 PRK11646 multidrug resistance 99.5 1.7E-13 3.7E-18 109.9 13.3 105 80-187 39-143 (400)
63 PRK11102 bicyclomycin/multidru 99.5 6.2E-14 1.3E-18 111.0 10.0 105 80-187 19-123 (377)
64 TIGR00897 2A0118 polyol permea 99.5 1.4E-13 3E-18 110.4 11.8 108 80-187 41-149 (402)
65 PRK10207 dipeptide/tripeptide 99.5 2.4E-13 5.2E-18 111.7 12.1 106 80-187 43-151 (489)
66 KOG0254|consensus 99.5 2.3E-13 4.9E-18 112.5 12.1 98 87-187 89-186 (513)
67 KOG2533|consensus 99.5 6.4E-13 1.4E-17 108.5 13.3 106 80-188 74-179 (495)
68 TIGR00924 yjdL_sub1_fam amino 99.5 3.7E-13 8E-18 110.3 11.4 103 82-187 43-149 (475)
69 KOG0255|consensus 99.5 1.9E-13 4.1E-18 113.1 8.6 101 80-183 111-211 (521)
70 TIGR00896 CynX cyanate transpo 99.4 1.8E-13 4E-18 107.7 6.7 103 80-187 28-130 (355)
71 KOG0252|consensus 99.4 5.8E-13 1.3E-17 105.7 7.5 143 24-185 40-186 (538)
72 KOG2615|consensus 99.4 5.2E-13 1.1E-17 103.7 6.9 99 84-186 65-163 (451)
73 KOG3764|consensus 99.4 1.6E-12 3.4E-17 101.6 9.2 105 80-187 99-204 (464)
74 TIGR00883 2A0106 metabolite-pr 99.4 2.6E-12 5.7E-17 101.6 10.5 125 36-187 4-140 (394)
75 PRK10489 enterobactin exporter 99.4 4.8E-13 1E-17 107.7 6.2 108 80-187 45-154 (417)
76 PRK08633 2-acyl-glycerophospho 99.4 4.6E-12 9.9E-17 113.4 12.6 101 87-187 47-147 (1146)
77 PRK09584 tppB putative tripept 99.4 1.3E-11 2.9E-16 101.8 13.0 105 80-186 50-157 (500)
78 TIGR00890 2A0111 Oxalate/Forma 99.3 9.4E-12 2E-16 97.9 10.3 107 80-187 233-339 (377)
79 TIGR00899 2A0120 sugar efflux 99.3 2.4E-11 5.2E-16 96.0 12.3 98 80-180 26-124 (375)
80 KOG2504|consensus 99.3 9.8E-12 2.1E-16 102.3 9.8 137 21-188 42-179 (509)
81 PF00083 Sugar_tr: Sugar (and 99.3 2.1E-13 4.5E-18 110.7 -1.7 103 85-187 44-146 (451)
82 TIGR00901 2A0125 AmpG-related 99.3 8.5E-11 1.8E-15 92.6 13.0 109 80-188 237-354 (356)
83 PRK10642 proline/glycine betai 99.3 1.2E-10 2.7E-15 95.7 14.5 104 80-184 279-383 (490)
84 TIGR01299 synapt_SV2 synaptic 99.3 6.8E-11 1.5E-15 101.1 13.2 95 90-187 598-692 (742)
85 PRK11551 putative 3-hydroxyphe 99.3 5.1E-11 1.1E-15 95.4 11.6 105 80-187 248-352 (406)
86 PRK15462 dipeptide/tripeptide 99.3 7.4E-11 1.6E-15 96.6 12.0 106 80-187 38-146 (493)
87 TIGR00895 2A0115 benzoate tran 99.3 6.4E-11 1.4E-15 93.9 10.9 105 80-187 278-382 (398)
88 TIGR00902 2A0127 phenyl propri 99.3 1E-10 2.2E-15 93.3 12.1 102 80-185 233-334 (382)
89 PF06609 TRI12: Fungal trichot 99.2 2.7E-10 5.8E-15 94.8 13.8 101 80-185 72-172 (599)
90 TIGR00880 2_A_01_02 Multidrug 99.2 1.4E-11 3.1E-16 83.5 5.1 91 94-187 5-95 (141)
91 cd06174 MFS The Major Facilita 99.2 2.8E-10 6E-15 88.5 13.0 105 80-187 204-309 (352)
92 PRK06814 acylglycerophosphoeth 99.2 1.5E-10 3.3E-15 103.8 12.7 98 87-187 52-152 (1140)
93 PRK09556 uhpT sugar phosphate 99.2 3.1E-10 6.7E-15 92.8 12.7 107 80-187 287-393 (467)
94 PRK11010 ampG muropeptide tran 99.2 2.5E-10 5.5E-15 94.0 12.2 128 31-187 18-151 (491)
95 COG0738 FucP Fucose permease [ 99.2 2.1E-10 4.5E-15 90.1 10.9 124 35-185 23-146 (422)
96 TIGR00883 2A0106 metabolite-pr 99.2 1.4E-10 3E-15 91.7 10.3 105 80-184 248-353 (394)
97 PRK15011 sugar efflux transpor 99.2 6.6E-10 1.4E-14 88.9 13.8 103 80-186 245-347 (393)
98 KOG0569|consensus 99.2 1.3E-10 2.9E-15 94.3 9.5 98 89-186 62-159 (485)
99 PRK11902 ampG muropeptide tran 99.2 3.6E-10 7.9E-15 90.6 11.8 128 31-187 5-138 (402)
100 TIGR00901 2A0125 AmpG-related 99.2 1.5E-10 3.3E-15 91.1 9.3 106 80-187 16-127 (356)
101 TIGR00891 2A0112 putative sial 99.2 6E-10 1.3E-14 88.7 12.6 105 80-187 267-372 (405)
102 TIGR00900 2A0121 H+ Antiporter 99.2 6.1E-10 1.3E-14 87.3 11.7 106 80-187 240-345 (365)
103 TIGR00899 2A0120 sugar efflux 99.2 1E-09 2.2E-14 86.7 12.9 104 80-187 228-331 (375)
104 PRK12382 putative transporter; 99.1 2.1E-09 4.5E-14 85.8 14.5 96 89-187 251-346 (392)
105 PRK05122 major facilitator sup 99.1 3.2E-09 6.8E-14 84.9 15.0 97 88-187 250-346 (399)
106 PRK09952 shikimate transporter 99.1 2.1E-09 4.6E-14 87.3 13.2 106 80-185 279-385 (438)
107 PRK10406 alpha-ketoglutarate t 99.1 2.3E-09 4.9E-14 86.9 13.3 107 80-186 272-379 (432)
108 PRK03893 putative sialic acid 99.1 8.4E-10 1.8E-14 90.6 10.9 107 80-187 304-410 (496)
109 TIGR00711 efflux_EmrB drug res 99.1 1.1E-09 2.5E-14 89.4 11.5 107 80-187 284-392 (485)
110 TIGR00893 2A0114 d-galactonate 99.1 2.1E-09 4.5E-14 84.8 12.5 107 80-187 244-355 (399)
111 PRK03699 putative transporter; 99.1 4.1E-09 8.8E-14 84.4 14.0 103 80-186 234-336 (394)
112 PRK15011 sugar efflux transpor 99.1 4.1E-09 8.9E-14 84.3 14.0 95 80-178 44-140 (393)
113 TIGR00896 CynX cyanate transpo 99.1 5E-09 1.1E-13 82.6 14.1 103 80-186 225-329 (355)
114 PRK15075 citrate-proton sympor 99.1 3.3E-09 7.1E-14 86.0 13.4 106 80-185 267-373 (434)
115 PRK11128 putative 3-phenylprop 99.1 1.9E-09 4.2E-14 85.9 11.8 102 80-185 233-334 (382)
116 PRK12307 putative sialic acid 99.1 3.6E-09 7.8E-14 85.2 13.5 107 80-187 259-365 (426)
117 PF05977 MFS_3: Transmembrane 99.1 1.7E-09 3.8E-14 89.5 11.4 108 80-187 38-147 (524)
118 PF07690 MFS_1: Major Facilita 99.1 1.7E-09 3.6E-14 84.5 10.8 108 80-187 235-343 (352)
119 TIGR00889 2A0110 nucleoside tr 99.1 2.8E-09 6E-14 86.2 12.3 101 85-185 249-350 (418)
120 PRK14995 methyl viologen resis 99.1 2.2E-09 4.8E-14 88.5 11.9 107 80-186 288-394 (495)
121 PRK09705 cynX putative cyanate 99.1 5.4E-09 1.2E-13 83.7 13.5 104 80-187 233-337 (393)
122 PRK10489 enterobactin exporter 99.0 4.3E-09 9.2E-14 84.8 11.8 105 80-187 252-356 (417)
123 TIGR00886 2A0108 nitrite extru 99.0 3.8E-09 8.2E-14 83.2 11.3 108 80-188 254-362 (366)
124 TIGR00902 2A0127 phenyl propri 99.0 3.2E-09 7E-14 84.6 10.8 123 32-186 11-135 (382)
125 PRK10504 putative transporter; 99.0 4.1E-09 8.8E-14 86.2 11.6 108 80-187 290-397 (471)
126 TIGR00882 2A0105 oligosacchari 99.0 7E-09 1.5E-13 83.0 12.7 93 80-172 31-128 (396)
127 PF11700 ATG22: Vacuole efflux 99.0 1.4E-08 3E-13 83.3 14.1 104 80-186 310-423 (477)
128 PRK03545 putative arabinose tr 99.0 7E-09 1.5E-13 82.8 12.1 103 80-186 234-336 (390)
129 PRK03633 putative MFS family t 99.0 1.3E-08 2.8E-13 81.1 13.5 99 80-184 228-326 (381)
130 TIGR01301 GPH_sucrose GPH fami 99.0 6.3E-09 1.4E-13 85.1 11.8 105 80-184 32-157 (477)
131 PRK09528 lacY galactoside perm 99.0 2.9E-09 6.3E-14 85.8 9.5 99 82-183 257-355 (420)
132 COG2223 NarK Nitrate/nitrite t 99.0 5.5E-09 1.2E-13 82.5 9.8 132 28-186 221-356 (417)
133 TIGR00889 2A0110 nucleoside tr 99.0 8.5E-09 1.8E-13 83.3 11.3 85 80-167 31-116 (418)
134 TIGR00879 SP MFS transporter, 99.0 6.7E-09 1.5E-13 84.1 10.6 108 80-187 312-427 (481)
135 PRK11128 putative 3-phenylprop 98.9 8.1E-09 1.8E-13 82.3 10.4 98 80-184 32-133 (382)
136 KOG0569|consensus 98.9 7.7E-09 1.7E-13 84.2 10.2 141 20-187 265-412 (485)
137 PRK10077 xylE D-xylose transpo 98.9 2.4E-08 5.2E-13 81.7 13.2 107 80-186 299-407 (479)
138 KOG0253|consensus 98.9 4.6E-09 1E-13 82.0 8.1 131 20-181 73-203 (528)
139 PRK08633 2-acyl-glycerophospho 98.9 9.8E-09 2.1E-13 92.2 11.3 104 80-186 261-365 (1146)
140 COG2270 Permeases of the major 98.9 1.4E-08 3.1E-13 80.3 10.3 105 80-187 281-385 (438)
141 TIGR00897 2A0118 polyol permea 98.9 4.6E-08 9.9E-13 78.6 13.4 106 80-187 250-358 (402)
142 PF05977 MFS_3: Transmembrane 98.9 2.5E-08 5.4E-13 82.6 11.7 105 80-187 247-351 (524)
143 TIGR00881 2A0104 phosphoglycer 98.9 2.7E-08 5.8E-13 78.3 11.5 107 80-187 245-354 (379)
144 PRK09874 drug efflux system pr 98.9 4.1E-08 8.9E-13 78.5 12.7 95 89-186 260-354 (408)
145 PRK09528 lacY galactoside perm 98.9 2.2E-08 4.9E-13 80.7 11.2 51 80-130 39-89 (420)
146 TIGR01272 gluP glucose/galacto 98.9 7.3E-08 1.6E-12 75.0 13.6 98 81-183 172-269 (310)
147 TIGR00892 2A0113 monocarboxyla 98.9 2.2E-08 4.8E-13 81.8 11.1 105 80-187 269-377 (455)
148 TIGR00710 efflux_Bcr_CflA drug 98.9 7.2E-09 1.6E-13 82.1 7.8 107 80-187 235-343 (385)
149 KOG2325|consensus 98.9 2.2E-08 4.7E-13 81.3 10.3 105 81-186 65-172 (488)
150 PF06813 Nodulin-like: Nodulin 98.9 1.3E-08 2.9E-13 76.3 8.3 118 38-184 15-136 (250)
151 TIGR00792 gph sugar (Glycoside 98.8 1.1E-08 2.4E-13 82.6 8.1 107 80-186 28-143 (437)
152 TIGR00792 gph sugar (Glycoside 98.8 3.6E-08 7.7E-13 79.7 10.6 101 85-187 255-362 (437)
153 PRK11273 glpT sn-glycerol-3-ph 98.8 8.2E-08 1.8E-12 78.3 12.6 106 80-186 282-390 (452)
154 PRK11663 regulatory protein Uh 98.8 9.8E-08 2.1E-12 77.5 12.9 107 80-187 272-381 (434)
155 COG2814 AraJ Arabinose efflux 98.8 5.8E-08 1.3E-12 77.1 10.8 127 30-187 217-343 (394)
156 PF05631 DUF791: Protein of un 98.8 9.2E-08 2E-12 74.6 11.7 88 80-171 62-150 (354)
157 KOG2563|consensus 98.8 4.1E-08 8.9E-13 78.3 9.6 141 19-187 39-184 (480)
158 TIGR00887 2A0109 phosphate:H+ 98.8 9.9E-08 2.1E-12 78.9 11.8 93 95-187 343-436 (502)
159 COG2271 UhpC Sugar phosphate p 98.8 8.9E-08 1.9E-12 75.9 10.8 138 25-189 252-392 (448)
160 PF13347 MFS_2: MFS/sugar tran 98.8 5E-08 1.1E-12 79.0 9.7 88 87-175 260-347 (428)
161 PRK09848 glucuronide transport 98.8 5.1E-08 1.1E-12 79.4 9.7 106 80-186 257-369 (448)
162 PRK06814 acylglycerophosphoeth 98.8 2.9E-08 6.4E-13 89.3 9.0 105 80-187 254-378 (1140)
163 TIGR00898 2A0119 cation transp 98.8 6.1E-08 1.3E-12 79.9 10.0 94 93-187 361-454 (505)
164 PRK11195 lysophospholipid tran 98.7 1.8E-07 3.8E-12 75.1 11.8 104 80-187 234-338 (393)
165 TIGR02332 HpaX 4-hydroxyphenyl 98.7 1.9E-07 4.1E-12 75.4 11.8 103 82-187 274-377 (412)
166 PRK15402 multidrug efflux syst 98.7 1.5E-07 3.2E-12 75.6 11.1 107 80-187 244-352 (406)
167 TIGR02718 sider_RhtX_FptX side 98.7 1.7E-07 3.6E-12 74.9 11.1 108 80-187 236-348 (390)
168 COG2807 CynX Cyanate permease 98.7 1.8E-07 3.9E-12 72.9 10.7 103 80-187 40-142 (395)
169 TIGR00882 2A0105 oligosacchari 98.7 1.2E-07 2.5E-12 76.0 9.8 98 83-183 250-347 (396)
170 COG3104 PTR2 Dipeptide/tripept 98.7 4.9E-07 1.1E-11 73.2 13.1 103 82-185 56-161 (498)
171 PRK11043 putative transporter; 98.7 2.3E-07 4.9E-12 74.3 11.4 106 80-187 231-339 (401)
172 PRK11010 ampG muropeptide tran 98.7 3E-07 6.6E-12 75.9 12.3 107 80-186 251-359 (491)
173 PRK11646 multidrug resistance 98.7 1.8E-07 3.9E-12 75.2 10.7 104 81-187 237-341 (400)
174 PRK11102 bicyclomycin/multidru 98.7 3.9E-07 8.5E-12 72.2 12.5 106 80-186 223-329 (377)
175 PRK10054 putative transporter; 98.7 1.4E-07 3E-12 75.7 9.3 102 81-185 238-340 (395)
176 PRK10213 nepI ribonucleoside t 98.7 6.4E-07 1.4E-11 71.9 13.1 100 80-184 245-345 (394)
177 PRK15034 nitrate/nitrite trans 98.7 2.6E-07 5.7E-12 75.3 10.6 81 94-174 293-376 (462)
178 PRK10133 L-fucose transporter; 98.7 3.9E-07 8.4E-12 74.2 11.6 100 80-184 288-387 (438)
179 PRK10091 MFS transport protein 98.6 6.5E-07 1.4E-11 71.4 11.6 99 80-180 228-327 (382)
180 COG0477 ProP Permeases of the 98.6 1.1E-06 2.3E-11 66.3 11.8 99 87-186 39-138 (338)
181 KOG4686|consensus 98.6 4.6E-09 9.9E-14 79.5 -1.2 107 80-186 72-179 (459)
182 PLN00028 nitrate transmembrane 98.6 2.6E-07 5.7E-12 75.9 8.9 105 80-188 281-392 (476)
183 PRK10473 multidrug efflux syst 98.6 5.3E-07 1.1E-11 72.0 10.2 93 80-177 232-324 (392)
184 PF03825 Nuc_H_symport: Nucleo 98.6 7.4E-07 1.6E-11 71.7 11.0 106 80-187 235-345 (400)
185 PRK09669 putative symporter Ya 98.6 3.5E-07 7.6E-12 74.4 9.0 106 80-185 38-152 (444)
186 TIGR00903 2A0129 major facilit 98.6 8.2E-07 1.8E-11 70.7 10.6 101 80-187 220-324 (368)
187 TIGR00885 fucP L-fucose:H+ sym 98.6 1.8E-06 3.9E-11 69.7 12.6 94 85-182 267-360 (410)
188 TIGR00712 glpT glycerol-3-phos 98.5 1.3E-06 2.8E-11 71.0 11.4 106 80-186 280-388 (438)
189 KOG0253|consensus 98.5 3.8E-07 8.2E-12 71.6 7.5 87 97-187 391-478 (528)
190 PRK10429 melibiose:sodium symp 98.5 1.1E-06 2.3E-11 72.3 10.4 89 85-173 264-354 (473)
191 PF06779 DUF1228: Protein of u 98.5 5.8E-07 1.3E-11 55.9 6.6 75 38-139 5-79 (85)
192 PRK09669 putative symporter Ya 98.5 1.4E-06 3E-11 71.0 10.8 84 89-173 266-349 (444)
193 PF03825 Nuc_H_symport: Nucleo 98.5 2.7E-06 5.8E-11 68.5 11.9 91 80-173 30-121 (400)
194 PRK11902 ampG muropeptide tran 98.5 2E-06 4.4E-11 69.0 11.0 103 80-184 238-348 (402)
195 KOG2504|consensus 98.5 3E-06 6.5E-11 70.2 11.9 131 26-186 299-431 (509)
196 COG2807 CynX Cyanate permease 98.5 5.6E-06 1.2E-10 64.8 12.4 105 80-188 236-342 (395)
197 TIGR00894 2A0114euk Na(+)-depe 98.5 3.8E-06 8.2E-11 68.7 12.0 108 80-188 290-405 (465)
198 PF01306 LacY_symp: LacY proto 98.4 9.4E-06 2E-10 65.2 12.7 102 81-185 253-354 (412)
199 PRK09584 tppB putative tripept 98.4 7.7E-06 1.7E-10 67.8 12.3 98 89-186 318-425 (500)
200 PRK11652 emrD multidrug resist 98.4 3.3E-06 7.2E-11 67.5 9.8 106 80-187 236-342 (394)
201 PRK10429 melibiose:sodium symp 98.4 2.2E-06 4.7E-11 70.4 8.9 104 80-183 35-147 (473)
202 KOG4686|consensus 98.4 5E-06 1.1E-10 63.4 9.9 104 79-187 292-396 (459)
203 COG2211 MelB Na+/melibiose sym 98.4 4.9E-06 1.1E-10 67.6 10.1 93 80-173 265-357 (467)
204 TIGR02718 sider_RhtX_FptX side 98.3 1E-05 2.2E-10 64.7 11.5 132 28-186 4-140 (390)
205 PF12832 MFS_1_like: MFS_1 lik 98.3 4.5E-06 9.7E-11 51.2 7.3 47 80-126 28-74 (77)
206 PF05978 UNC-93: Ion channel r 98.3 2.6E-05 5.6E-10 54.5 11.1 90 92-185 42-131 (156)
207 TIGR00924 yjdL_sub1_fam amino 98.3 2.8E-05 6.2E-10 64.0 13.0 99 89-187 314-425 (475)
208 PRK11462 putative transporter; 98.2 2.5E-05 5.5E-10 64.1 11.3 85 88-173 264-348 (460)
209 PRK10207 dipeptide/tripeptide 98.2 4.8E-05 1E-09 62.9 12.6 99 89-187 311-423 (489)
210 TIGR00788 fbt folate/biopterin 98.2 8.9E-06 1.9E-10 66.9 8.1 94 80-177 54-153 (468)
211 KOG3762|consensus 98.1 9.6E-06 2.1E-10 66.4 7.6 104 80-186 399-502 (618)
212 PF03209 PUCC: PUCC protein; 98.1 0.00011 2.4E-09 58.6 13.2 108 80-187 237-345 (403)
213 KOG0254|consensus 98.1 1.8E-05 3.9E-10 65.8 9.4 105 80-186 323-438 (513)
214 PF13347 MFS_2: MFS/sugar tran 98.0 8.2E-06 1.8E-10 66.1 5.6 107 80-186 30-147 (428)
215 COG0738 FucP Fucose permease [ 98.0 0.00021 4.5E-09 56.9 12.5 115 30-174 241-355 (422)
216 PRK09848 glucuronide transport 98.0 6.4E-05 1.4E-09 61.3 9.8 105 80-184 37-151 (448)
217 TIGR00788 fbt folate/biopterin 97.9 1.2E-05 2.7E-10 66.0 4.2 108 80-187 281-395 (468)
218 PRK15462 dipeptide/tripeptide 97.7 0.0013 2.9E-08 54.4 13.4 99 88-186 309-420 (493)
219 PF03137 OATP: Organic Anion T 97.7 6.3E-06 1.4E-10 68.8 -0.2 108 80-187 31-185 (539)
220 PRK11462 putative transporter; 97.7 0.00038 8.3E-09 57.2 9.4 108 80-187 38-154 (460)
221 PF00083 Sugar_tr: Sugar (and 97.6 2.7E-07 5.9E-12 75.0 -9.8 92 95-187 294-393 (451)
222 PF11700 ATG22: Vacuole efflux 97.6 0.002 4.4E-08 53.2 12.8 89 88-177 71-160 (477)
223 COG2211 MelB Na+/melibiose sym 97.6 0.0008 1.7E-08 55.0 10.0 108 80-187 41-157 (467)
224 TIGR00926 2A1704 Peptide:H+ sy 97.6 0.0004 8.6E-09 59.4 8.6 107 80-186 16-131 (654)
225 PF01306 LacY_symp: LacY proto 97.5 0.00054 1.2E-08 55.2 8.3 44 80-123 36-79 (412)
226 PF03209 PUCC: PUCC protein; 97.5 0.00058 1.3E-08 54.6 8.3 106 80-186 8-132 (403)
227 PF06609 TRI12: Fungal trichot 97.5 0.0018 3.9E-08 54.7 11.1 98 88-186 350-448 (599)
228 PRK15403 multidrug efflux syst 97.5 0.0028 6.2E-08 51.2 12.0 105 80-186 247-354 (413)
229 KOG2533|consensus 97.5 0.00041 9E-09 57.4 7.2 124 28-181 276-405 (495)
230 TIGR01301 GPH_sucrose GPH fami 97.4 0.0048 1E-07 50.9 12.5 97 91-187 309-426 (477)
231 KOG3764|consensus 97.4 0.00016 3.5E-09 57.5 3.7 92 80-174 299-392 (464)
232 KOG2816|consensus 97.3 0.0037 7.9E-08 51.4 10.2 84 95-186 70-155 (463)
233 COG2270 Permeases of the major 97.2 0.0019 4.1E-08 51.9 7.4 99 87-185 58-157 (438)
234 KOG2816|consensus 97.1 0.0034 7.3E-08 51.6 8.8 103 80-186 270-373 (463)
235 KOG0637|consensus 97.1 0.0027 5.8E-08 51.5 7.2 133 24-184 32-184 (498)
236 KOG2615|consensus 96.9 0.014 3E-07 46.6 9.9 105 80-187 290-396 (451)
237 COG3104 PTR2 Dipeptide/tripept 96.9 0.034 7.5E-07 45.7 12.5 100 88-187 325-438 (498)
238 KOG2532|consensus 96.9 0.021 4.5E-07 47.2 11.2 60 80-139 287-355 (466)
239 KOG0255|consensus 96.8 0.042 9E-07 45.8 12.9 89 98-186 361-449 (521)
240 KOG4332|consensus 96.8 0.00025 5.5E-09 53.9 -0.3 89 80-172 65-154 (454)
241 PF06963 FPN1: Ferroportin1 (F 96.8 0.033 7.1E-07 45.5 11.6 107 80-186 286-399 (432)
242 PTZ00207 hypothetical protein; 96.6 0.012 2.6E-07 49.9 8.2 91 92-187 396-495 (591)
243 KOG0252|consensus 96.6 0.0013 2.9E-08 53.4 2.4 87 98-187 359-450 (538)
244 KOG3626|consensus 96.6 0.0031 6.7E-08 54.2 4.5 108 80-187 125-281 (735)
245 KOG3762|consensus 96.6 0.0009 2E-08 55.3 1.1 60 80-139 39-99 (618)
246 KOG3098|consensus 96.5 0.0078 1.7E-07 49.3 6.0 88 93-184 56-143 (461)
247 PF01770 Folate_carrier: Reduc 96.4 0.044 9.6E-07 44.3 9.6 101 81-185 34-135 (412)
248 TIGR00805 oat sodium-independe 96.2 0.016 3.5E-07 49.6 6.9 53 80-132 359-414 (633)
249 KOG2563|consensus 96.1 0.011 2.3E-07 48.1 4.8 97 81-177 295-394 (480)
250 PF02487 CLN3: CLN3 protein; 95.7 0.3 6.6E-06 39.5 11.5 96 85-187 279-379 (402)
251 PF03092 BT1: BT1 family; Int 95.6 0.088 1.9E-06 43.1 8.2 105 80-185 18-130 (433)
252 TIGR00769 AAA ADP/ATP carrier 94.8 0.88 1.9E-05 37.8 11.9 102 87-188 43-174 (472)
253 KOG1330|consensus 94.3 0.13 2.8E-06 42.2 5.7 101 84-186 280-392 (493)
254 KOG3098|consensus 94.1 1.6 3.5E-05 36.1 11.7 89 95-184 287-393 (461)
255 PRK03612 spermidine synthase; 93.8 3.6 7.9E-05 34.7 14.2 91 82-172 45-139 (521)
256 KOG1237|consensus 92.8 1.4 3.1E-05 37.5 9.8 94 80-173 66-182 (571)
257 PF00854 PTR2: POT family; In 91.8 0.71 1.5E-05 36.8 6.6 69 118-186 2-79 (372)
258 KOG4332|consensus 91.3 1.5 3.3E-05 34.0 7.4 97 89-185 284-386 (454)
259 KOG3097|consensus 90.0 2.4 5.2E-05 33.6 7.6 73 96-172 67-139 (390)
260 PF02487 CLN3: CLN3 protein; 88.9 11 0.00025 30.7 11.5 90 81-174 53-142 (402)
261 COG5336 Uncharacterized protei 87.5 2.8 6.1E-05 27.2 5.4 38 90-127 45-83 (116)
262 KOG0637|consensus 87.0 8.1 0.00018 32.1 9.1 80 89-171 334-413 (498)
263 PF01770 Folate_carrier: Reduc 86.8 9.2 0.0002 31.3 9.4 92 89-183 287-380 (412)
264 TIGR00939 2a57 Equilibrative N 86.5 17 0.00037 30.0 11.9 94 90-184 310-413 (437)
265 PF03092 BT1: BT1 family; Int 85.3 0.76 1.6E-05 37.7 2.7 104 84-187 252-362 (433)
266 PF03137 OATP: Organic Anion T 84.0 0.32 7E-06 41.0 0.0 80 24-129 304-386 (539)
267 KOG3574|consensus 83.0 11 0.00023 30.9 7.9 40 80-121 58-102 (510)
268 KOG3626|consensus 77.4 9.2 0.0002 33.7 6.5 75 26-126 393-470 (735)
269 TIGR01272 gluP glucose/galacto 76.3 12 0.00027 29.0 6.6 32 92-123 269-300 (310)
270 TIGR00806 rfc RFC reduced fola 75.8 28 0.00061 29.4 8.6 92 90-184 301-394 (511)
271 TIGR00880 2_A_01_02 Multidrug 75.2 19 0.00041 23.1 9.0 42 88-129 88-129 (141)
272 KOG1479|consensus 73.4 46 0.00099 27.3 9.0 30 143-172 117-146 (406)
273 KOG3810|consensus 73.3 8.3 0.00018 31.0 4.7 93 90-183 274-366 (433)
274 COG3202 ATP/ADP translocase [E 71.3 62 0.0013 27.3 9.6 52 86-137 60-112 (509)
275 COG1268 BioY Uncharacterized c 67.4 26 0.00056 25.3 5.9 23 94-116 89-111 (184)
276 PF02694 UPF0060: Uncharacteri 66.5 11 0.00025 24.4 3.5 49 86-134 53-101 (107)
277 KOG3880|consensus 65.5 37 0.0008 27.1 6.7 58 126-186 328-385 (409)
278 COG4262 Predicted spermidine s 64.7 77 0.0017 25.9 11.4 86 85-170 41-132 (508)
279 PF06963 FPN1: Ferroportin1 (F 62.8 75 0.0016 26.3 8.5 41 90-130 41-81 (432)
280 PRK02237 hypothetical protein; 61.6 19 0.00042 23.4 3.9 48 87-134 56-103 (109)
281 PF02632 BioY: BioY family; I 61.0 47 0.001 23.0 6.1 25 94-118 60-84 (148)
282 PF07672 MFS_Mycoplasma: Mycop 58.3 83 0.0018 24.2 7.9 95 89-183 143-246 (267)
283 KOG2325|consensus 58.2 8.9 0.00019 32.1 2.5 37 150-186 395-431 (488)
284 KOG1479|consensus 56.8 63 0.0014 26.5 6.9 92 90-183 285-383 (406)
285 PF04550 Phage_holin_2: Phage 52.0 29 0.00062 21.7 3.4 10 147-156 35-44 (89)
286 PF09527 ATPase_gene1: Putativ 47.9 48 0.001 18.4 5.4 36 94-129 7-43 (55)
287 TIGR00939 2a57 Equilibrative N 47.6 71 0.0015 26.4 6.1 32 143-175 106-137 (437)
288 PF03219 TLC: TLC ATP/ADP tran 47.1 1.8E+02 0.0038 24.6 9.4 103 86-188 57-189 (491)
289 COG2119 Predicted membrane pro 47.1 1.1E+02 0.0024 22.2 8.7 37 96-132 143-179 (190)
290 TIGR02230 ATPase_gene1 F0F1-AT 44.0 86 0.0019 20.2 5.4 33 96-128 51-84 (100)
291 PF11947 DUF3464: Protein of u 40.7 36 0.00078 23.8 2.9 38 144-184 98-135 (153)
292 PF01733 Nucleoside_tran: Nucl 36.5 15 0.00032 28.6 0.6 92 92-183 187-288 (309)
293 PF13493 DUF4118: Domain of un 36.2 48 0.001 20.9 2.9 25 93-117 81-105 (105)
294 PF06123 CreD: Inner membrane 35.5 1.8E+02 0.004 24.1 6.6 83 97-186 301-388 (430)
295 PRK11715 inner membrane protei 33.1 2E+02 0.0044 23.9 6.5 85 96-187 306-395 (436)
296 PF11299 DUF3100: Protein of u 31.7 94 0.002 23.4 4.0 35 148-183 176-210 (241)
297 PF10785 NADH-u_ox-rdase: NADH 30.7 1.4E+02 0.003 18.6 5.0 40 100-139 31-77 (86)
298 PF13000 Acatn: Acetyl-coenzym 30.4 2.4E+02 0.0051 24.2 6.5 42 147-188 409-450 (544)
299 COG2233 UraA Xanthine/uracil p 29.1 3.5E+02 0.0075 22.7 8.7 99 80-178 42-140 (451)
300 PF14494 DUF4436: Domain of un 28.7 2.5E+02 0.0054 21.5 6.0 39 84-122 198-241 (256)
301 KOG2399|consensus 27.9 4.2E+02 0.009 23.2 8.6 55 80-136 475-529 (605)
302 COG3389 Uncharacterized protei 27.8 85 0.0018 23.6 3.2 29 94-122 35-63 (277)
303 PLN02975 complex I subunit 27.4 1.7E+02 0.0038 18.7 4.3 25 115-139 54-78 (97)
304 PF05232 BTP: Bacterial Transm 27.3 1.4E+02 0.003 17.5 4.3 38 80-117 27-64 (67)
305 COG3086 RseC Positive regulato 27.3 2.2E+02 0.0047 19.8 6.8 42 80-121 65-106 (150)
306 KOG3097|consensus 26.7 46 0.00099 26.7 1.8 72 87-158 310-382 (390)
307 PF14851 FAM176: FAM176 family 26.3 1.3E+02 0.0027 21.1 3.7 42 130-172 6-47 (153)
308 COG5346 Predicted membrane pro 25.4 2.2E+02 0.0047 19.1 4.7 20 107-126 82-101 (136)
309 TIGR01625 YidE_YbjL_dupl AspT/ 25.0 2.5E+02 0.0053 19.6 6.6 33 88-120 57-89 (154)
310 KOG3880|consensus 23.3 95 0.0021 24.9 2.9 69 89-160 64-132 (409)
311 PF11752 DUF3309: Protein of u 23.0 1.3E+02 0.0028 16.6 2.6 36 95-130 6-41 (49)
312 TIGR03802 Asp_Ala_antiprt aspa 21.0 5.1E+02 0.011 22.4 7.1 90 88-183 451-542 (562)
313 COG3238 Uncharacterized protei 20.7 98 0.0021 21.6 2.3 20 96-115 98-117 (150)
314 PF11298 DUF3099: Protein of u 20.5 1.8E+02 0.004 17.5 3.2 60 110-176 10-69 (73)
315 PF13940 Ldr_toxin: Toxin Ldr, 20.4 1.2E+02 0.0025 15.2 1.9 20 94-113 15-34 (35)
316 PF05767 Pox_A14: Poxvirus vir 20.4 2.4E+02 0.0052 17.8 4.3 25 108-134 5-29 (92)
No 1
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.82 E-value=1.4e-19 Score=145.47 Aligned_cols=136 Identities=21% Similarity=0.347 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHH
Q psy3312 22 QRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYV 101 (189)
Q Consensus 22 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (189)
.+|....++++.++..+.++..+++..|.+. +++|++..+.+++.+++.+++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~---------------------------~~~~~s~~~~g~~~s~~~~~~~ 57 (412)
T TIGR02332 5 LFRRLIIFLFILFIFSFLDRINIGFAGLTMG---------------------------KDLGLSATMFGLAATLFYAAYV 57 (412)
T ss_pred ehhHHHHHHHHHHHHHHhhhhhHHHHHHhhH---------------------------hhcCCCHHHHHHHHHHHHHHHH
Confidence 3566777788899999999999999999888 8999999999999999999999
Q ss_pred HhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHH
Q psy3312 102 LNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMG 181 (189)
Q Consensus 102 ~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~ 181 (189)
+++++.|++.||+|||+++..+.++..++.++.+++++ ++.+++.|+++|++.+...+....++.||+|+++|++++
T Consensus 58 ~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~ 134 (412)
T TIGR02332 58 ICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATG---PESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARAN 134 (412)
T ss_pred HHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHH
Confidence 99999999999999999999999999999999999888 889999999999999999999999999999999999999
Q ss_pred HHHhhc
Q psy3312 182 ALVFAG 187 (189)
Q Consensus 182 ~~~~~~ 187 (189)
++++.+
T Consensus 135 ~~~~~~ 140 (412)
T TIGR02332 135 ALFMIA 140 (412)
T ss_pred HHHHHH
Confidence 998754
No 2
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.80 E-value=1.2e-19 Score=148.08 Aligned_cols=135 Identities=19% Similarity=0.231 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHH
Q psy3312 23 RYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVL 102 (189)
Q Consensus 23 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (189)
.+.++.+.++.++..+.++..++...|.+. +++|++..+.+++.+.+.+++.+
T Consensus 27 ~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~---------------------------~~~~~s~~~~g~~~s~~~~~~~~ 79 (467)
T PRK09556 27 FMQSYLVVFIGYLTMYLIRKNFKAAQNDMI---------------------------STYGLSTTELGMIGLGFSITYGV 79 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhhhhHHHH---------------------------HhcCCCHHHHHHHHHHHHHHHHH
Confidence 455677788888899999999999999998 89999999999999999999999
Q ss_pred hhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHH-----hhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccch
Q psy3312 103 NHIPGALIAERYGGKYVLGFGLLVSTLATLATPLA-----ARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTER 177 (189)
Q Consensus 103 ~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r 177 (189)
++++.|+++||+|||+++..++++.++..++.+.. ++ ++.+++.|+++|++.+...+....+++||+|+++|
T Consensus 80 ~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r 156 (467)
T PRK09556 80 GKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVS---LGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKR 156 (467)
T ss_pred HHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccch---HHHHHHHHHHHHHHHhccchHHHHHHHHHcCccce
Confidence 99999999999999999999988888777766653 44 88999999999999999999999999999999999
Q ss_pred hhHHHHHhhc
Q psy3312 178 GRMGALVFAG 187 (189)
Q Consensus 178 ~~~~~~~~~~ 187 (189)
++++|++..+
T Consensus 157 g~a~gi~~~~ 166 (467)
T PRK09556 157 GRFLGFWNIS 166 (467)
T ss_pred eeeEEeeecc
Confidence 9998887654
No 3
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.79 E-value=1.9e-19 Score=140.73 Aligned_cols=139 Identities=19% Similarity=0.321 Sum_probs=132.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHH
Q psy3312 19 LISQRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFW 98 (189)
Q Consensus 19 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (189)
.+++|+.+++.+++++...+..+..++.+.|.+. ++.++|.+|.+++.+.+.+
T Consensus 23 y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~---------------------------e~~~lsk~~lG~i~s~f~i 75 (448)
T COG2271 23 YKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALI---------------------------EDGGLSKTQLGILGSAFSI 75 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHH---------------------------HhcCCCHHHHHHHHHHHHH
Confidence 4567888999999999999999999999999999 8899999999999999999
Q ss_pred HHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchh
Q psy3312 99 GYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERG 178 (189)
Q Consensus 99 ~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~ 178 (189)
.+.++..+.|.++||.++|+.+.+++++.++.+++++++++ .+.+.++.+++|+.+|..+|.+...+.+|+|++|||
T Consensus 76 ~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s---~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG 152 (448)
T COG2271 76 TYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPS---LFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERG 152 (448)
T ss_pred HHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccC
Confidence 99999999999999999999999999999999999999997 889999999999999999999999999999999999
Q ss_pred hHHHHHhhc
Q psy3312 179 RMGALVFAG 187 (189)
Q Consensus 179 ~~~~~~~~~ 187 (189)
+..++++.+
T Consensus 153 ~~~siWn~s 161 (448)
T COG2271 153 TWWSIWNTS 161 (448)
T ss_pred ceEEEehhh
Confidence 999988764
No 4
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.77 E-value=8.9e-18 Score=134.60 Aligned_cols=120 Identities=15% Similarity=0.067 Sum_probs=113.2
Q ss_pred HHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccc-hhHHHHHHHHHHHHhhhhhhhhhhhhCC
Q psy3312 38 YVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERT-QGLILSSFFWGYVLNHIPGALIAERYGG 116 (189)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~dr~g~ 116 (189)
.-.+...+++.|.+. +++|+++.+ .+.+.++++.++++..++.|+++||+|.
T Consensus 39 ~e~R~n~s~a~p~L~---------------------------~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~ 91 (511)
T TIGR00806 39 AQFRPGESFITPYLL---------------------------TVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRY 91 (511)
T ss_pred HHhhchHHHHHHHHH---------------------------HHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 346788899999998 899999999 9999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHhhcC
Q psy3312 117 KYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAGS 188 (189)
Q Consensus 117 r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 188 (189)
|+++..+.+.+.+..++.+++.+ ++.+.+.|++.|+++|..+ +...++..|+|+++|+++.|++.++.
T Consensus 92 K~vL~l~~l~Wsl~t~L~~fa~S---l~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~ 159 (511)
T TIGR00806 92 KPVLVLQALSFVCVWLLLLLGTS---VWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAV 159 (511)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999888 8899999999999999999 99999999999999999999988764
No 5
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.77 E-value=6.5e-18 Score=137.62 Aligned_cols=163 Identities=30% Similarity=0.552 Sum_probs=131.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHH
Q psy3312 19 LISQRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFW 98 (189)
Q Consensus 19 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (189)
..+.|+.+..+++++....+.++..++...+.+.++.... ...|. ....+.....+++++++..+.+++.+.+.+
T Consensus 13 ~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~ 87 (465)
T TIGR00894 13 FCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENST---DLACL--SAENELDNIKNPNFKWSGALQGLILSSHFY 87 (465)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCC---Ccccc--ccccccccccCCCCCCCHHHhhHHHHHHHH
Confidence 3556888888899999999999999999888776432111 11111 111122233446899999999999999999
Q ss_pred HHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchh
Q psy3312 99 GYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERG 178 (189)
Q Consensus 99 ~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~ 178 (189)
++.+++++.|+++||+|||+++..+.++..++.++..++.... ++.+++.|+++|++.+..++....+++||+|+++|+
T Consensus 88 ~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~-~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~ 166 (465)
T TIGR00894 88 GQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGG-IALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERS 166 (465)
T ss_pred HHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcC-chHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHH
Confidence 9999999999999999999999999999988888776553322 678899999999999999999999999999999999
Q ss_pred hHHHHHhhc
Q psy3312 179 RMGALVFAG 187 (189)
Q Consensus 179 ~~~~~~~~~ 187 (189)
++.++...+
T Consensus 167 ~~~~~~~~~ 175 (465)
T TIGR00894 167 RLLGMSTSG 175 (465)
T ss_pred HHHHHHHHH
Confidence 999998765
No 6
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.77 E-value=1.5e-17 Score=132.33 Aligned_cols=137 Identities=20% Similarity=0.334 Sum_probs=126.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHH
Q psy3312 21 SQRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGY 100 (189)
Q Consensus 21 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (189)
+.+|..+..+++.++....+....+...+.+. +++|++..+.+++.+.+.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---------------------------~~~~~s~~~~g~~~~~~~~~~ 60 (405)
T TIGR00891 8 RAQWNAFSAAWLGWLLDAFDFFLVALVLAEVA---------------------------GEFGLTTVDAASLISAALISR 60 (405)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHhCCChhhHHHHHHHHHHHH
Confidence 34667777788999999999999999999998 899999999999999999999
Q ss_pred HHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhH
Q psy3312 101 VLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRM 180 (189)
Q Consensus 101 ~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~ 180 (189)
.++.++.|+++||+|||+++..+.++..++.++..++++ ++.+++.|++.|++.+..++....++.|++|+++|+++
T Consensus 61 ~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~ 137 (405)
T TIGR00891 61 WFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPG---YITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKA 137 (405)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHH
Confidence 999999999999999999999999999999998888877 88999999999999999999999999999999999999
Q ss_pred HHHHhhc
Q psy3312 181 GALVFAG 187 (189)
Q Consensus 181 ~~~~~~~ 187 (189)
.++...+
T Consensus 138 ~~~~~~~ 144 (405)
T TIGR00891 138 SGLLISG 144 (405)
T ss_pred HHHHHHH
Confidence 9987654
No 7
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.77 E-value=1.6e-17 Score=134.23 Aligned_cols=137 Identities=13% Similarity=0.089 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeee---ccccchhH---HHHHH
Q psy3312 23 RYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFD---WDERTQGL---ILSSF 96 (189)
Q Consensus 23 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~ 96 (189)
++..+....++.+..+.++..+++..|.+. ++++ .+..+.+. +.+..
T Consensus 20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~---------------------------~~~~~~~~~~~~~~~~~~~~~~~ 72 (432)
T PRK10406 20 RIWAIVGASSGNLVEWFDFYVYSFCSLYFA---------------------------HIFFPSGNTTTQLLQTAGVFAAG 72 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHhCCCCCchHHHHHHHHHHHHH
Confidence 444555577888899999999999999887 5653 33443333 33445
Q ss_pred HHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhch-----hhHHHHHHHHHHhhccccchhHHHHHHHhh
Q psy3312 97 FWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSF-----GAVGILCARFIVGLGQGPAYPSMNVILAQW 171 (189)
Q Consensus 97 ~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~ 171 (189)
.++..++++++|+++||+|||+++..+.+++++++++.+++++.. ....+++.|+++|++.|+.++...++++|+
T Consensus 73 ~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~ 152 (432)
T PRK10406 73 FLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEV 152 (432)
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHh
Confidence 555669999999999999999999999999999999998887631 124688999999999999999999999999
Q ss_pred cCccchhhHHHHHhh
Q psy3312 172 VPKTERGRMGALVFA 186 (189)
Q Consensus 172 ~~~~~r~~~~~~~~~ 186 (189)
+|+++|+++.++...
T Consensus 153 ~p~~~rg~~~~~~~~ 167 (432)
T PRK10406 153 AVEGRKGFYASFQYV 167 (432)
T ss_pred CCCCcccHHHHHHHH
Confidence 999999998887543
No 8
>KOG1330|consensus
Probab=99.76 E-value=3.5e-18 Score=134.94 Aligned_cols=136 Identities=21% Similarity=0.363 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHH
Q psy3312 23 RYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVL 102 (189)
Q Consensus 23 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (189)
.+....+.++...+++.++..+....+... +.+|++++..|++++++.+.+++
T Consensus 31 ~~~~l~il~~vnlmny~Dr~~iagv~~~v~---------------------------~~fni~~s~~Gll~~vf~v~~~i 83 (493)
T KOG1330|consen 31 PTLTLVILCLVNLMNYADRYTIAGVLKEVQ---------------------------TYFNISDSELGLLQTVFIVVFMI 83 (493)
T ss_pred chHHHHHHHHHHHHHHhhhhhhhhhhHHHH---------------------------HhcCCCchhccchhHHHHHHHHH
Confidence 445566688888999999999888777776 89999999999999999999999
Q ss_pred hhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHH
Q psy3312 103 NHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGA 182 (189)
Q Consensus 103 ~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~ 182 (189)
..|++|+++||++||+++.+|..++.++.++.+++.+ +|+++++|.+.|+|.+...+..+++++|.||.++|+++++
T Consensus 84 ~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~---Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ 160 (493)
T KOG1330|consen 84 ASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNH---FWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLG 160 (493)
T ss_pred HHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHH---HHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHH
Confidence 9999999999999999999999999999999999977 9999999999999999999999999999999999999999
Q ss_pred HHhhcC
Q psy3312 183 LVFAGS 188 (189)
Q Consensus 183 ~~~~~~ 188 (189)
+++.+.
T Consensus 161 ify~~i 166 (493)
T KOG1330|consen 161 IFYFAI 166 (493)
T ss_pred Hhhhhc
Confidence 998764
No 9
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.75 E-value=3e-17 Score=132.07 Aligned_cols=137 Identities=15% Similarity=0.271 Sum_probs=124.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHH
Q psy3312 21 SQRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGY 100 (189)
Q Consensus 21 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (189)
+.++.....+.+.++....+.....+..|.+. +++|+++.+.+++.+.+.+++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---------------------------~~~~~s~~~~~~~~~~~~~~~ 66 (426)
T PRK12307 14 RPQKNALFSAWLGYVFDGFDFMLIFYIMYLIK---------------------------ADLGLTDMEGAFLATAAFIGR 66 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---------------------------HHhCCCHHHHHHHHHHHHHHH
Confidence 34555566778888888888888888999888 899999999999999999999
Q ss_pred HHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhH
Q psy3312 101 VLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRM 180 (189)
Q Consensus 101 ~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~ 180 (189)
.+++++.|+++||+|||+++..+.++.+++.++.+++++ ++.+++.|+++|++.+..++....++.|++|+++|+++
T Consensus 67 ~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~ 143 (426)
T PRK12307 67 PFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASG---VIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKA 143 (426)
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHh
Confidence 999999999999999999999999999999999998887 88999999999999999999999999999999999999
Q ss_pred HHHHhhc
Q psy3312 181 GALVFAG 187 (189)
Q Consensus 181 ~~~~~~~ 187 (189)
.++...+
T Consensus 144 ~~~~~~~ 150 (426)
T PRK12307 144 SAFLVSG 150 (426)
T ss_pred hhHHHHH
Confidence 9987654
No 10
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.75 E-value=2.4e-17 Score=140.03 Aligned_cols=136 Identities=16% Similarity=0.221 Sum_probs=122.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHH
Q psy3312 21 SQRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGY 100 (189)
Q Consensus 21 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (189)
+..|.+++++.++.+....+...++...|.+. .+++++..+.+++.+++.++.
T Consensus 163 ~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~---------------------------~~~gls~~~~g~l~s~~~lG~ 215 (742)
T TIGR01299 163 RFQWALFFVLGLALMADGVEVFVVGFVLPSAE---------------------------KDLCIPDSGKGMLGLIVYLGM 215 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHhCCCHHHHHHHHHHHHHHH
Confidence 44666767777777777777888888889887 789999999999999999999
Q ss_pred HHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhH
Q psy3312 101 VLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRM 180 (189)
Q Consensus 101 ~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~ 180 (189)
+++.+++|+++||+|||+++++++++.+++.++.+++++ ++.++++|+++|++.|+..+....++.|++|+++|++.
T Consensus 216 iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s---~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~ 292 (742)
T TIGR01299 216 MVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQG---YGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEH 292 (742)
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 999999999999999999999999999999999888887 88999999999999999999999999999999999998
Q ss_pred HHHHhh
Q psy3312 181 GALVFA 186 (189)
Q Consensus 181 ~~~~~~ 186 (189)
+++..+
T Consensus 293 ~g~~~~ 298 (742)
T TIGR01299 293 LSWLCM 298 (742)
T ss_pred HHHHHH
Confidence 887654
No 11
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.75 E-value=3.5e-17 Score=132.27 Aligned_cols=132 Identities=12% Similarity=0.149 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHh
Q psy3312 24 YLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLN 103 (189)
Q Consensus 24 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (189)
++.+.+..++....+......+++.+.+. +.++|++++|.+++.++..+++.+.
T Consensus 33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~--------------------------~~~~~ls~~q~g~l~ai~~l~~al~ 86 (462)
T PRK15034 33 RRNLWISVSCLLLAFCVWMLFSAVTVNLN--------------------------KIGFNFTTDQLFLLTALPSVSGALL 86 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------------------------hhhcCCCHHHHHHHHHHHHHHHHHH
Confidence 45666688888888888999999888876 1489999999999999999999999
Q ss_pred hhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHH-----hhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchh
Q psy3312 104 HIPGALIAERYGGKYVLGFGLLVSTLATLATPLA-----ARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERG 178 (189)
Q Consensus 104 ~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~ 178 (189)
.++.|++.||+|.|+++.++.++..+..++.+++ ++ ++.+++.|++.|++ +..++.....+++|+|+++||
T Consensus 87 rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s---~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG 162 (462)
T PRK15034 87 RVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTP---FGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQG 162 (462)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCC---HHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhH
Confidence 9999999999999999999999999999988876 44 88999999999998 778999999999999999999
Q ss_pred hHHHHHh
Q psy3312 179 RMGALVF 185 (189)
Q Consensus 179 ~~~~~~~ 185 (189)
++.|+..
T Consensus 163 ~A~Gi~~ 169 (462)
T PRK15034 163 SALGING 169 (462)
T ss_pred HHHHHHH
Confidence 9999984
No 12
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.74 E-value=5e-17 Score=130.04 Aligned_cols=137 Identities=28% Similarity=0.333 Sum_probs=124.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHH
Q psy3312 21 SQRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGY 100 (189)
Q Consensus 21 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (189)
+++|.+..++++..+....+....+...|.+. +++|+++.+.+++.+.+.++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~s~~~~g~~~~~~~~~~ 63 (406)
T PRK11551 11 SRLALTIGLCFLVALLEGLDLQSAGVAAPRMA---------------------------QEFGLDVAQMGWAFSAGILGL 63 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHhCCCHHHHHHHHHHHHHHH
Confidence 35777777788888888888999999999998 889999999999999999999
Q ss_pred HHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhH
Q psy3312 101 VLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRM 180 (189)
Q Consensus 101 ~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~ 180 (189)
.++.++.|+++||+|||+++..+.++..++.++..+.++ ++.+++.|+++|++.+...+....++.|++|+++|+++
T Consensus 64 ~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~ 140 (406)
T PRK11551 64 LPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWD---FPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTA 140 (406)
T ss_pred HHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 999999999999999999999999999888888888777 88999999999999999999999999999999999999
Q ss_pred HHHHhhc
Q psy3312 181 GALVFAG 187 (189)
Q Consensus 181 ~~~~~~~ 187 (189)
+++.+.+
T Consensus 141 ~~~~~~~ 147 (406)
T PRK11551 141 VSLMYCG 147 (406)
T ss_pred HHHHHHH
Confidence 9987654
No 13
>KOG2532|consensus
Probab=99.74 E-value=2e-17 Score=134.15 Aligned_cols=109 Identities=46% Similarity=0.830 Sum_probs=104.4
Q ss_pred ceeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccc
Q psy3312 79 HYEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQG 158 (189)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g 158 (189)
+.++++++.+.+++.+.+++|+++++++.|+++||+|.|+++..+.++.++.+++.+++.+.+ ++.+++.|++||+++|
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~-~~~~~~~R~lqGl~~g 143 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIG-FYLLLVLRFLQGLGQG 143 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhc-chhhHHHHHHhHHHHh
Confidence 478999999999999999999999999999999999999999999999999999999998877 7788999999999999
Q ss_pred cchhHHHHHHHhhcCccchhhHHHHHhhcC
Q psy3312 159 PAYPSMNVILAQWVPKTERGRMGALVFAGS 188 (189)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 188 (189)
..+|++..+.++|+|++||++..++.+++.
T Consensus 144 ~~~pa~~~i~~~W~P~~Ers~~~ail~~g~ 173 (466)
T KOG2532|consen 144 VLFPAIGSILAKWAPPNERSTFIAILTAGS 173 (466)
T ss_pred HHHhhhhceeeeECCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998875
No 14
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.74 E-value=4.1e-17 Score=134.11 Aligned_cols=135 Identities=16% Similarity=0.154 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHH
Q psy3312 23 RYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVL 102 (189)
Q Consensus 23 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (189)
+|..+..+.++.+....+...++...|.+. +++|.+..+.+|+.+.+.++..+
T Consensus 4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~---------------------------~~l~~s~~~~~~~~~~~~l~~~~ 56 (495)
T PRK14995 4 QWLTLVIIVLVYIPVAIDATVLHVAAPTLS---------------------------MTLGASGNELLWIIDIYSLVMAG 56 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHhCCCHhHHHHHHHHHHHHHHH
Confidence 456777788999999999999999999998 89999999999999999999999
Q ss_pred hhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhc-CccchhhHH
Q psy3312 103 NHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWV-PKTERGRMG 181 (189)
Q Consensus 103 ~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~-~~~~r~~~~ 181 (189)
+.++.|+++||+|||+++..+.++..++.++++++++ ++.++++|+++|++.+...+.....+.+++ |+++|+++.
T Consensus 57 ~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~---~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~ 133 (495)
T PRK14995 57 MVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPT---ASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMAL 133 (495)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999999999999999999888 889999999999999988888888887776 678999999
Q ss_pred HHHhhc
Q psy3312 182 ALVFAG 187 (189)
Q Consensus 182 ~~~~~~ 187 (189)
+++...
T Consensus 134 g~~~~~ 139 (495)
T PRK14995 134 GVWAAV 139 (495)
T ss_pred HHHHHH
Confidence 987653
No 15
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.74 E-value=2.8e-17 Score=133.01 Aligned_cols=136 Identities=21% Similarity=0.389 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHH
Q psy3312 22 QRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYV 101 (189)
Q Consensus 22 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (189)
.|+.+....++.++..+.++..++...|.+. +++|++..+.+++.+.+.++++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~g~s~~~~g~~~~~~~~~~~ 72 (434)
T PRK11663 20 WRRHILITMYLGYALFYFTRKSFNAAMPEML---------------------------ADLGLSRSDIGLLATLFYITYG 72 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHhhHHHH---------------------------HhcCCCHHHHHHHHHHHHHHHH
Confidence 4556666677777888888888888999998 8899999999999999999999
Q ss_pred HhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHH
Q psy3312 102 LNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMG 181 (189)
Q Consensus 102 ~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~ 181 (189)
+++++.|++.||+|||+++.++.++.+++.++.+++++ ++.+++.|++.|++.|..++....++.|++|+++|++++
T Consensus 73 ~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~ 149 (434)
T PRK11663 73 VSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSS---LWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWW 149 (434)
T ss_pred HHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999999999888887 888999999999999988999999999999999999999
Q ss_pred HHHhhc
Q psy3312 182 ALVFAG 187 (189)
Q Consensus 182 ~~~~~~ 187 (189)
++.+.+
T Consensus 150 ~~~~~~ 155 (434)
T PRK11663 150 AIWNTA 155 (434)
T ss_pred HHHHHH
Confidence 988654
No 16
>PRK03545 putative arabinose transporter; Provisional
Probab=99.74 E-value=3.4e-17 Score=130.60 Aligned_cols=105 Identities=15% Similarity=0.221 Sum_probs=99.2
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP 159 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (189)
+++|.++.+.+++.+.+.+++.+++++.|++.||+|||+++..+.++.+++.+++.++++ ++.+++.|+++|++.+.
T Consensus 37 ~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~r~~~G~~~~~ 113 (390)
T PRK03545 37 QSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWN---FTVLLISRIGIAFAHAI 113 (390)
T ss_pred hHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999888 88999999999999988
Q ss_pred chhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 160 AYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
.++...+++.|++|+++|++++++...+
T Consensus 114 ~~~~~~~~i~~~~~~~~r~~~~g~~~~~ 141 (390)
T PRK03545 114 FWSITASLAIRVAPAGKKAQALSLLATG 141 (390)
T ss_pred HHHHHHHHHHHhCChhhhhhHHHHHHHH
Confidence 8899999999999999999999987654
No 17
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.73 E-value=6.7e-17 Score=127.17 Aligned_cols=133 Identities=26% Similarity=0.279 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhh
Q psy3312 25 LIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNH 104 (189)
Q Consensus 25 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (189)
...+...++.|.............|.+. +++|++...+|++.+.|.++..++.
T Consensus 13 ~~l~aLa~~~F~igttEfv~~gLLp~iA---------------------------~dl~vs~~~aG~lis~yAl~~ai~a 65 (394)
T COG2814 13 LALLALALAAFAIGTTEFVPVGLLPPIA---------------------------ADLGVSEGAAGQLITAYALGVALGA 65 (394)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhchHHHH---------------------------HHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 3444466666777777888888899998 9999999999999999999999999
Q ss_pred hhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHH
Q psy3312 105 IPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALV 184 (189)
Q Consensus 105 ~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~ 184 (189)
++...+.||+.||++++..+.++.+++++.+++++ ++.++++|++.|+..|..++....+.++..||++|++++++.
T Consensus 66 p~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~---f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv 142 (394)
T COG2814 66 PLLALLTGRLERRRLLLGLLALFIVSNLLSALAPS---FAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALV 142 (394)
T ss_pred HHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHH
Confidence 99999999999999999999999999999999999 999999999999999999999999999999999999999998
Q ss_pred hhc
Q psy3312 185 FAG 187 (189)
Q Consensus 185 ~~~ 187 (189)
+.|
T Consensus 143 ~~G 145 (394)
T COG2814 143 FTG 145 (394)
T ss_pred HHH
Confidence 876
No 18
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.72 E-value=2.3e-16 Score=126.20 Aligned_cols=105 Identities=15% Similarity=0.171 Sum_probs=99.0
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP 159 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (189)
+++|+++.+.++..+.+.++..+++++.|+++||+|||+++..+.++.+++.++..++++ ++.+++.|+++|++.+.
T Consensus 48 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~~~g~ 124 (394)
T PRK10213 48 QDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANS---FSLLLIGRACLGLALGG 124 (394)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHCh---HHHHHHHHHHHHHhhHH
Confidence 889999999999999999999999999999999999999999999999999988888877 89999999999999999
Q ss_pred chhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 160 AYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
..+....++.|++|+++|+++.++...+
T Consensus 125 ~~~~~~~~i~~~~~~~~~~~a~~~~~~~ 152 (394)
T PRK10213 125 FWAMSASLTMRLVPPRTVPKALSVIFGA 152 (394)
T ss_pred HHHHHHHHHHHHcCHhHHHHHHHHHHHH
Confidence 9999999999999999999999987653
No 19
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.72 E-value=2.4e-16 Score=129.44 Aligned_cols=136 Identities=16% Similarity=0.239 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccc-hhH-----HHHHHHH
Q psy3312 25 LIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERT-QGL-----ILSSFFW 98 (189)
Q Consensus 25 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~ 98 (189)
..+....++.++.+.+...+++..+.+. ++++.+..+ ..+ +.++..+
T Consensus 16 ~~~~~~~~g~~~~~~d~~~~~~~~~~i~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~l 68 (490)
T PRK10642 16 KAITAASLGNAMEWFDFGVYGFVAYALG---------------------------KVFFPGADPSVQMIAALATFSVPFL 68 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HhhCCCCCcHHHHHHHHHHHHHHHH
Confidence 4555677888899999999999999887 555433222 122 2467788
Q ss_pred HHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchh-----hHHHHHHHHHHhhccccchhHHHHHHHhhcC
Q psy3312 99 GYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFG-----AVGILCARFIVGLGQGPAYPSMNVILAQWVP 173 (189)
Q Consensus 99 ~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~ 173 (189)
+..++++++|+++||+|||+++..++++.++++++++++++... ...++++|+++|++.|+.++....+++|++|
T Consensus 69 ~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p 148 (490)
T PRK10642 69 IRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSP 148 (490)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999988321 0137899999999999999999999999999
Q ss_pred ccchhhHHHHHhhc
Q psy3312 174 KTERGRMGALVFAG 187 (189)
Q Consensus 174 ~~~r~~~~~~~~~~ 187 (189)
+++|+++.++...+
T Consensus 149 ~~~Rg~~~~~~~~~ 162 (490)
T PRK10642 149 DRKRGFMGSWLDFG 162 (490)
T ss_pred CCCCcHHHHHHHHH
Confidence 99999998876643
No 20
>PRK15075 citrate-proton symporter; Provisional
Probab=99.71 E-value=1.9e-16 Score=128.10 Aligned_cols=134 Identities=18% Similarity=0.098 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHH-HHH-----
Q psy3312 23 RYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLIL-SSF----- 96 (189)
Q Consensus 23 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----- 96 (189)
|+......+++.+..+.++..+++..|.+. ++++.++.+.+.+. +..
T Consensus 13 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~---------------------------~~~~~~~~~~~~~~~~~~~~~~~ 65 (434)
T PRK15075 13 KARAILRVTSGNFLEMFDFFLFGFYATAIA---------------------------KTFFPAGNEFASLMLTFAVFGAG 65 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHhCCCCCchHHHHHHHHHHHHH
Confidence 445666788899999999999999999998 88888777765433 222
Q ss_pred HHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhH--------HHHHHHHHHhhccccchhHHHHHH
Q psy3312 97 FWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAV--------GILCARFIVGLGQGPAYPSMNVIL 168 (189)
Q Consensus 97 ~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~r~l~G~~~g~~~~~~~~~~ 168 (189)
.++..+++++.|+++||+|||++++.+.++..++..+++++++ ++ .++++|+++|++.+...+....++
T Consensus 66 ~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~ 142 (434)
T PRK15075 66 FLMRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPG---YATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYL 142 (434)
T ss_pred HHHhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHHHHHHhhccccccHHHHHHHH
Confidence 2223468899999999999999999999999999999998887 44 468999999999999999899999
Q ss_pred HhhcCccchhhHHHHHhh
Q psy3312 169 AQWVPKTERGRMGALVFA 186 (189)
Q Consensus 169 ~~~~~~~~r~~~~~~~~~ 186 (189)
+|++|+++|++++++...
T Consensus 143 ~e~~p~~~rg~~~~~~~~ 160 (434)
T PRK15075 143 AEIATPGRKGFYTSWQSA 160 (434)
T ss_pred HhhCCcccchHHHHHHHH
Confidence 999999999999987654
No 21
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.71 E-value=9.5e-17 Score=131.00 Aligned_cols=146 Identities=16% Similarity=0.171 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHH
Q psy3312 23 RYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVL 102 (189)
Q Consensus 23 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (189)
.+...++..++.+....+...++...+.+.+....+. ..++++++.+.+++.+++.++..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~s~~~ig~~~ 70 (479)
T PRK10077 10 IFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQ-------------------NLSESAANSLLGFCVASALIGCII 70 (479)
T ss_pred HHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccc-------------------cccccCChhHHHHHHHHHHHHHHH
Confidence 4445555666767777777777777777762221111 145688999999999999999999
Q ss_pred hhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHh---------hchhhHHHHHHHHHHhhccccchhHHHHHHHhhcC
Q psy3312 103 NHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAA---------RSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVP 173 (189)
Q Consensus 103 ~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~ 173 (189)
+++++|+++||+|||+++..+.++..++.++.++.. +...++.++++|+++|++.|+..+....+++|++|
T Consensus 71 ~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~ 150 (479)
T PRK10077 71 GGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAP 150 (479)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCC
Confidence 999999999999999999999999888887766531 21224677899999999999999999999999999
Q ss_pred ccchhhHHHHHhhc
Q psy3312 174 KTERGRMGALVFAG 187 (189)
Q Consensus 174 ~~~r~~~~~~~~~~ 187 (189)
+++|++++++...+
T Consensus 151 ~~~rg~~~~~~~~~ 164 (479)
T PRK10077 151 AHIRGKLVSFNQFA 164 (479)
T ss_pred hhhhhHHHHHHHHH
Confidence 99999999987643
No 22
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.71 E-value=1.4e-16 Score=129.58 Aligned_cols=139 Identities=19% Similarity=0.297 Sum_probs=116.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHH
Q psy3312 21 SQRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGY 100 (189)
Q Consensus 21 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (189)
+.+|.++...++.....+.++..++...|.+. ++ |++..+.+++.+.+.+++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~---------------------------~~-g~s~~~~g~~~~~~~i~~ 76 (452)
T PRK11273 25 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV---------------------------EQ-GFSRGDLGFALSGISIAY 76 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH---------------------------Hc-CCCHHHHHHHHHHHHHHH
Confidence 34455555566666666677777778888887 66 999999999999999999
Q ss_pred HHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhc-hhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhh
Q psy3312 101 VLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARS-FGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGR 179 (189)
Q Consensus 101 ~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~ 179 (189)
++++++.|+++||+|||++++.+.++.+++.++.++++.. .+++.+++.|++.|++.+..++.....+.+++|+++|++
T Consensus 77 ~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~ 156 (452)
T PRK11273 77 GFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGG 156 (452)
T ss_pred HHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHH
Confidence 9999999999999999999999999999888888776421 127788899999999999888888889999999999999
Q ss_pred HHHHHhhc
Q psy3312 180 MGALVFAG 187 (189)
Q Consensus 180 ~~~~~~~~ 187 (189)
++++++.+
T Consensus 157 ~~~~~~~~ 164 (452)
T PRK11273 157 IVSVWNCA 164 (452)
T ss_pred HHHHHHHH
Confidence 99987654
No 23
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.71 E-value=4.4e-16 Score=127.69 Aligned_cols=136 Identities=18% Similarity=0.320 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHH
Q psy3312 22 QRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYV 101 (189)
Q Consensus 22 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (189)
.++..+..+++..+....+....+...|.+. +++|+++.+.+++.+.+.++++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---------------------------~~~~~s~~~~~~~~~~~~~~~~ 69 (496)
T PRK03893 17 AQWKAFSAAWLGYLLDGFDFVLITLVLTEVQ---------------------------GEFGLTTVQAASLISAAFISRW 69 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHhCCCHHHHHHHHHHHHHHHH
Confidence 4556666778888888888888888889988 8899999999999999999999
Q ss_pred HhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHH
Q psy3312 102 LNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMG 181 (189)
Q Consensus 102 ~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~ 181 (189)
++.++.|+++||+|||+++..+.++.+++.++..+.++ ++.+++.|++.|++.+..++....++.|++|+++|+++.
T Consensus 70 ~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~ 146 (496)
T PRK03893 70 FGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPG---YWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKAS 146 (496)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 99999999999999999999999999999998888877 889999999999999999999999999999999999998
Q ss_pred HHHhhc
Q psy3312 182 ALVFAG 187 (189)
Q Consensus 182 ~~~~~~ 187 (189)
++...+
T Consensus 147 ~~~~~~ 152 (496)
T PRK03893 147 GFLISG 152 (496)
T ss_pred HHHHHH
Confidence 887654
No 24
>PRK09952 shikimate transporter; Provisional
Probab=99.70 E-value=5.9e-16 Score=125.45 Aligned_cols=146 Identities=16% Similarity=0.157 Sum_probs=112.9
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceee--eccccchhHH
Q psy3312 15 KPDYLISQRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEF--DWDERTQGLI 92 (189)
Q Consensus 15 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 92 (189)
......++++......++..+..+.+...++...+.... +++ +.++. .+++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--------------------------~~~~~~~~~~-~~~~ 64 (438)
T PRK09952 12 EGTLSLSRARRAALGSFAGAVVDWYDFLLYGITAALVFN--------------------------REFFPQVSPA-MGTL 64 (438)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HhcCCCCCcH-HHHH
Confidence 333344556667777888889999999988887765431 233 44444 3443
Q ss_pred H-----HHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchh-----hHHHHHHHHHHhhccccchh
Q psy3312 93 L-----SSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFG-----AVGILCARFIVGLGQGPAYP 162 (189)
Q Consensus 93 ~-----~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~r~l~G~~~g~~~~ 162 (189)
. ++..++..+++++.|+++||+|||+++..+.++++++.++++++++... .+.++++|+++|++.|+.++
T Consensus 65 ~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~ 144 (438)
T PRK09952 65 AAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWG 144 (438)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHH
Confidence 2 3455667899999999999999999999999999999999999888220 11578899999999999999
Q ss_pred HHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 163 SMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 163 ~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
....++.|++|+++|++..+....+
T Consensus 145 ~~~~~~~e~~p~~~rg~~~~~~~~g 169 (438)
T PRK09952 145 GAALLAVESAPKNKKAFYSSGVQVG 169 (438)
T ss_pred HHHHHHHHhCCCCCCcHHHHHHHHH
Confidence 9999999999999999887776554
No 25
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.70 E-value=5e-16 Score=127.15 Aligned_cols=130 Identities=15% Similarity=0.264 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhhh
Q psy3312 26 IGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHI 105 (189)
Q Consensus 26 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (189)
.........+.........++..|.+. +++|++..+.+++.+.+.+++.++++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~l~---------------------------~~~gls~~~~g~~~~~~~~~~~~~~~ 89 (476)
T PLN00028 37 AFHLSWISFFTCFVSTFAAAPLLPIIR---------------------------DNLNLTKSDIGNAGIASVSGSIFSRL 89 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 333455555666666666777788887 89999999999999999999999999
Q ss_pred hhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHh
Q psy3312 106 PGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVF 185 (189)
Q Consensus 106 ~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~ 185 (189)
+.|+++||+|||+++..+.++.+++.++.+++++ ++.+++.|+++|++.+.. .....+++|++|+++|++++++.+
T Consensus 90 ~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s---~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~ 165 (476)
T PLN00028 90 AMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSS---ATGFIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAA 165 (476)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHH
Confidence 9999999999999999999999999888888877 778889999999988764 445668899999999999999875
Q ss_pred h
Q psy3312 186 A 186 (189)
Q Consensus 186 ~ 186 (189)
.
T Consensus 166 ~ 166 (476)
T PLN00028 166 G 166 (476)
T ss_pred H
Confidence 3
No 26
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.69 E-value=2e-16 Score=126.41 Aligned_cols=115 Identities=11% Similarity=0.112 Sum_probs=107.2
Q ss_pred hhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHH
Q psy3312 42 FCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLG 121 (189)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~ 121 (189)
...++..|.+. +++|++..+.+++.+.+.+++.+++++.|+++||+|||+++.
T Consensus 26 ~~~~~~lp~i~---------------------------~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~ 78 (393)
T PRK09705 26 TSVGPLLPQLR---------------------------QASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVA 78 (393)
T ss_pred hccchhHHHHH---------------------------HHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHH
Confidence 56778889998 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 122 FGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
.+..+.+++.++.+++++ ++.+++.|+++|++.+...+....++.+++| ++|+++++++..+
T Consensus 79 ~~~~l~~~~~~~~~~a~~---~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~ 140 (393)
T PRK09705 79 ISLLLIAVGALMRELYPQ---SALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAA 140 (393)
T ss_pred HHHHHHHHHHHHHHHCcc---hHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHH
Confidence 999999999999999988 8899999999999999999999999999997 8899999987643
No 27
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.69 E-value=3.2e-16 Score=127.94 Aligned_cols=131 Identities=19% Similarity=0.252 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhhhh
Q psy3312 27 GLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIP 106 (189)
Q Consensus 27 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (189)
+..+.++.+....+....+...|.+. +++|.+..+.+++.+.+.++..++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~p~~~---------------------------~~~g~s~~~~~~~~~~~~~~~~~~~~~ 56 (485)
T TIGR00711 4 TIVLMLGTFMAVLDSTIVNVAIPTIA---------------------------GDLGSSLSQVQWVITSYMLANAISIPL 56 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HhcCCChhhhhHHHHHHHHHHHHHHHh
Confidence 44566677777888888889999998 889999999999999999999999999
Q ss_pred hhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312 107 GALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFA 186 (189)
Q Consensus 107 ~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 186 (189)
.|+++||+|||+++..+.++..++.+++.++++ ++.+++.|+++|++.+...+....++.|++|+++|+++.+++..
T Consensus 57 ~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 133 (485)
T TIGR00711 57 TGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPN---LELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGL 133 (485)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCC---HHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999988887 88999999999999999999999999999999999999998765
Q ss_pred c
Q psy3312 187 G 187 (189)
Q Consensus 187 ~ 187 (189)
+
T Consensus 134 ~ 134 (485)
T TIGR00711 134 T 134 (485)
T ss_pred H
Confidence 3
No 28
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.69 E-value=1.1e-16 Score=125.86 Aligned_cols=126 Identities=16% Similarity=0.276 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhhhhhhhh
Q psy3312 31 FLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGALI 110 (189)
Q Consensus 31 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 110 (189)
.+........+...+...|.+. +++|++..+.+++.+.+.++..+++++.|++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l 61 (377)
T TIGR00890 9 TVIMCFTSGYVYTWTLLAPPLG---------------------------RYFGVGVTAVAIWFTLLLIGLAMSMPVGGLL 61 (377)
T ss_pred HHHHHHHhhHHhhhhhHHHHHH---------------------------HHhCCCHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 3333344445667788889998 8999999999999999999999999999999
Q ss_pred hhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 111 AERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 111 ~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
+||+|||+++..+.++..++.++.+++++ ++.+++.|++.|++.+..++.....+.+++| ++|+++.++...+
T Consensus 62 ~d~~G~r~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 134 (377)
T TIGR00890 62 ADKFGPRAVAMLGGILYGLGFTFYAIADS---LAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGG 134 (377)
T ss_pred HHHcCccchhHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHh
Confidence 99999999999999999999999999888 8899999999999999888888889999996 6899999988765
No 29
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.69 E-value=2.1e-16 Score=127.80 Aligned_cols=104 Identities=23% Similarity=0.371 Sum_probs=93.4
Q ss_pred ccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhH
Q psy3312 84 WDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPS 163 (189)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~ 163 (189)
.+..+.+++.+++.++..++.+++|+++||+|||+++..+.++..++.++..+.....+++.+++.|+++|++.+...+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~ 147 (481)
T TIGR00879 68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASAL 147 (481)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhH
Confidence 45889999999999999999999999999999999999999999999888866654333668999999999999999999
Q ss_pred HHHHHHhhcCccchhhHHHHHhhc
Q psy3312 164 MNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 164 ~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
...++.|++|+++|+++.++.+.+
T Consensus 148 ~~~~i~~~~~~~~r~~~~~~~~~~ 171 (481)
T TIGR00879 148 VPMYLSEIAPKALRGALTSLYQLA 171 (481)
T ss_pred HHHHHHccCChhhhhhhhhHHHHH
Confidence 999999999999999999987654
No 30
>PRK03699 putative transporter; Provisional
Probab=99.69 E-value=4.3e-16 Score=124.50 Aligned_cols=133 Identities=18% Similarity=0.173 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHH
Q psy3312 23 RYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVL 102 (189)
Q Consensus 23 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (189)
|+.+...+++.++........++...|.+. +++|++.++.+++.+.+.+++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~---------------------------~~~~~s~~~~g~~~s~~~~~~~i 57 (394)
T PRK03699 5 RIKLTWISFLSYALTGALVIVTGMVMGPIA---------------------------EYFNLPVSSMSNTFTFLNAGILI 57 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHH---------------------------HHhCCCHHHHHHHHHHHHHHHHH
Confidence 455555667777777777888889999998 88999999999999999999999
Q ss_pred hhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHH
Q psy3312 103 NHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGA 182 (189)
Q Consensus 103 ~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~ 182 (189)
++++.|++.||+|||+++..+.++..++.++..++++ ++.+++.|+++|++.+...+....++.|++|+++|++..+
T Consensus 58 ~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~ 134 (394)
T PRK03699 58 SIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHS---LALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLL 134 (394)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcch---HHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHH
Confidence 9999999999999999999999999999998888877 8889999999999999888888999999999999999887
Q ss_pred HHh
Q psy3312 183 LVF 185 (189)
Q Consensus 183 ~~~ 185 (189)
+.+
T Consensus 135 ~~~ 137 (394)
T PRK03699 135 FTD 137 (394)
T ss_pred HHH
Confidence 654
No 31
>PRK10133 L-fucose transporter; Provisional
Probab=99.68 E-value=1.2e-15 Score=123.67 Aligned_cols=129 Identities=20% Similarity=0.210 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhhhhh
Q psy3312 28 LLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPG 107 (189)
Q Consensus 28 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (189)
....+.++.....+.......|.+. +++|+++.+.+++.+.+.+++.+++++.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~p~i~---------------------------~~~~~s~~~~gl~~~~~~~g~~i~~~~~ 81 (438)
T PRK10133 29 ALLCSLFFLWAVANNLNDILLPQFQ---------------------------QAFTLTNFQAGLIQSAFYFGYFIIPIPA 81 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355555666677788888899988 8999999999999999999999999999
Q ss_pred hhhhhhhCCchhHHHHHHHHHHHHHHHH---HHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHH
Q psy3312 108 ALIAERYGGKYVLGFGLLVSTLATLATP---LAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALV 184 (189)
Q Consensus 108 g~l~dr~g~r~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~ 184 (189)
|++.||+|||+++..+.++.+++.+++. .+++ ++.+++.|+++|++.+...+..+.++.++.|+++|.+.+++.
T Consensus 82 g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~---~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~ 158 (438)
T PRK10133 82 GILMKKLSYKAGIITGLFLYALGAALFWPAAEIMN---YTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLA 158 (438)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHH
Confidence 9999999999999999999999997753 3445 889999999999999999999999999987777776656655
Q ss_pred hh
Q psy3312 185 FA 186 (189)
Q Consensus 185 ~~ 186 (189)
..
T Consensus 159 ~~ 160 (438)
T PRK10133 159 QT 160 (438)
T ss_pred HH
Confidence 43
No 32
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.67 E-value=1.1e-15 Score=123.12 Aligned_cols=128 Identities=21% Similarity=0.141 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhhhhhhh
Q psy3312 30 GFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGAL 109 (189)
Q Consensus 30 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 109 (189)
..+..+..........+.+|.+. ++++.+..+.++..+++.+++.+++++.|+
T Consensus 21 ~~~~~~~~~~~~~~~~p~l~~i~---------------------------~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~ 73 (413)
T PRK15403 21 LILYDFAAYLTTDLIQPGIINVV---------------------------RDFNADVSLAPASVSLYLAGGMALQWLLGP 73 (413)
T ss_pred HHHHHHHHHHHHHhhccCHHHHH---------------------------HHhCCCHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 34444445555566677777777 889999999999999999999999999999
Q ss_pred hhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 110 IAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 110 l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
++||+|||+++..+.++..++.++..++++ ++.++++|+++|++.+...+....++.|++|+++|++.+++...+
T Consensus 74 l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~---~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (413)
T PRK15403 74 LSDRIGRRPVLITGALIFTLACAATLFTTS---MTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSI 148 (413)
T ss_pred HHHHcCchHHHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 999999999999999999999999888877 889999999999998876677778899999999999988876553
No 33
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.67 E-value=3.1e-16 Score=123.78 Aligned_cols=124 Identities=24% Similarity=0.525 Sum_probs=114.1
Q ss_pred HHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhhhhhhhhhhh
Q psy3312 34 FALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGALIAER 113 (189)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr 113 (189)
++..+.++..++...|.+. +++|++..+.+++.+++.++..++.++.|+++||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~---------------------------~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 55 (399)
T TIGR00893 3 TVINYLDRANLSFAAPMLQ---------------------------EDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDR 55 (399)
T ss_pred ehHHHHHHHhhhHhHHHHH---------------------------HhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 3456777788888888887 8899999999999999999999999999999999
Q ss_pred hCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 114 YGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 114 ~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
+|||+++..+.++..++..+.+++++ ++.+++.|+++|++.+...+....++.|++|+++|++..++...+
T Consensus 56 ~g~r~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 126 (399)
T TIGR00893 56 FGARKTLAVFIVIWGVFTGLQAFAGA---YVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSA 126 (399)
T ss_pred cCcceeeHHHHHHHHHHHHHHHHHcC---HHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 99999999999999999998888887 889999999999999999999999999999999999999987754
No 34
>TIGR00895 2A0115 benzoate transport.
Probab=99.67 E-value=1.5e-15 Score=120.34 Aligned_cols=135 Identities=27% Similarity=0.447 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHH
Q psy3312 23 RYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVL 102 (189)
Q Consensus 23 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (189)
++.......+..+.........++..|.+. +++|++..+.+++.+...++..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~ 67 (398)
T TIGR00895 15 QWRAIILSFLIMLMDGYDLAAMGFAAPAIS---------------------------AEWGLDPVQLGFLFSAGLIGMAF 67 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHh---------------------------hccCCCHHHHHHHHHHHHHHHHH
Confidence 445555566666666666777788888887 88999999999999999999999
Q ss_pred hhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHH
Q psy3312 103 NHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGA 182 (189)
Q Consensus 103 ~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~ 182 (189)
+.++.|+++||+|||+++..+.++..++.++..+.++ ++.+++.|++.|++.+...+....++.|++|+++|+++.+
T Consensus 68 ~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 144 (398)
T TIGR00895 68 GALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATN---VTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVG 144 (398)
T ss_pred HHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHh
Confidence 9999999999999999999999999998888888777 8889999999999999999999999999999999999998
Q ss_pred HHhhc
Q psy3312 183 LVFAG 187 (189)
Q Consensus 183 ~~~~~ 187 (189)
+...+
T Consensus 145 ~~~~~ 149 (398)
T TIGR00895 145 LMFCG 149 (398)
T ss_pred hHhhH
Confidence 87653
No 35
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.67 E-value=1.1e-15 Score=122.04 Aligned_cols=107 Identities=21% Similarity=0.211 Sum_probs=92.9
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHh---hc--hhhHHHHHHHHHHh
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAA---RS--FGAVGILCARFIVG 154 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~r~l~G 154 (189)
+++|+++.+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++..++. +. .+++.+++.|+++|
T Consensus 44 ~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 123 (399)
T PRK05122 44 DQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLG 123 (399)
T ss_pred HhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999988887766554432 11 12567899999999
Q ss_pred hccccchhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312 155 LGQGPAYPSMNVILAQWVPKTERGRMGALVFA 186 (189)
Q Consensus 155 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 186 (189)
++.+...+....++.|++|+++|+++.++...
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 155 (399)
T PRK05122 124 IGESLAGTGSILWGIGRVGALHTGRVISWNGI 155 (399)
T ss_pred hhHHhhcchHHHHHHhhcChhhhccchhhhhh
Confidence 99999999999999999999999999987654
No 36
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.67 E-value=1.4e-15 Score=119.78 Aligned_cols=125 Identities=18% Similarity=0.315 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHH-hhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhhhhhh
Q psy3312 30 GFLAFALTYVQRFCLSMAITE-MAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGA 108 (189)
Q Consensus 30 ~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 108 (189)
.+++.+..+.......+..|. +. +++|+++.+.+++.+.+.++++++.++.|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~s~~~~~~~~~~~~~~~~~~~~~~g 58 (366)
T TIGR00886 6 SWFGFFLSFSVWFAFSPLAVQMIK---------------------------DDLGLSTAQLGNLVAVPVLAGAVLRIILG 58 (366)
T ss_pred HHHHHHHHHHHHHHhHHhhhHHHH---------------------------HHhCCCHHHhhHhhHHHHHHHHHHHHHHH
Confidence 455556667777778888885 76 88999999999999999999999999999
Q ss_pred hhhhhhCCchhHHHHHHHHHHHHHHHHHHh-hchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHh
Q psy3312 109 LIAERYGGKYVLGFGLLVSTLATLATPLAA-RSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVF 185 (189)
Q Consensus 109 ~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~ 185 (189)
+++||+|||+++..+.++..++.++..+++ + ++.+++.|+++|++.+ .++....++++++|+++|+++.++..
T Consensus 59 ~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~ 132 (366)
T TIGR00886 59 FLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQS---YSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAA 132 (366)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHH
Confidence 999999999999999999999999988887 6 8899999999999855 45667889999999999999999876
No 37
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.66 E-value=2.3e-16 Score=124.22 Aligned_cols=125 Identities=20% Similarity=0.346 Sum_probs=114.4
Q ss_pred HHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhhhhhhhhhh
Q psy3312 33 AFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGALIAE 112 (189)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d 112 (189)
.++..+.++..++...|.+. +++|++..+.+++.+...++..++.++.|+++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~---------------------------~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d 55 (379)
T TIGR00881 3 GYAAYYLVRKNFALAMPYLV---------------------------EEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSD 55 (379)
T ss_pred hhhHHHHhHHhhhhhhHHHH---------------------------HHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 45566778888888889888 889999999999999999999999999999999
Q ss_pred hhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 113 RYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 113 r~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
|+|||+++..+.++..++.++..++++ ++.+++.|++.|++.+...+....++.|++|+++|+++.++...+
T Consensus 56 r~g~r~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 127 (379)
T TIGR00881 56 RSNPRVFLPIGLILCAIVNLFFGFSTS---LWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCS 127 (379)
T ss_pred hhCCeehhHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhcc
Confidence 999999999999999999999998887 889999999999999999999999999999999999988876554
No 38
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.66 E-value=6.5e-16 Score=122.59 Aligned_cols=118 Identities=16% Similarity=0.106 Sum_probs=95.9
Q ss_pred HHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCch
Q psy3312 39 VQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKY 118 (189)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~ 118 (189)
.....+++..|.+. +++|+++.+.+++.+.+.+++.+++++.|+++||+|||+
T Consensus 5 ~~~~~~~~~lp~i~---------------------------~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~ 57 (368)
T TIGR00903 5 AIWVTFSPVLSLVA---------------------------EDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRW 57 (368)
T ss_pred HHHHHHHhhHHHHH---------------------------HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH
Confidence 34456778888888 899999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 119 VLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 119 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
++..+......+.......++ ++.+++.|+++|++.+. .......++|++|+++|++++++...+
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~---~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~ 122 (368)
T TIGR00903 58 FLFGSLATFAAAAGRLLDPFN---YEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFA 122 (368)
T ss_pred HHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 877665555444332222244 88999999999999985 455666679999999999999988765
No 39
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.66 E-value=1.5e-15 Score=120.23 Aligned_cols=105 Identities=18% Similarity=0.348 Sum_probs=98.4
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP 159 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (189)
+++|.++.+.+++.+.+.++..++.++.|++.||+|||+++..+.++..++.++..+.++ ++.+++.|++.|++.+.
T Consensus 33 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~~~~~ 109 (385)
T TIGR00710 33 ADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNN---IETLLVLRFVQAFGASA 109 (385)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHcchhH
Confidence 889999999999999999999999999999999999999999999999999998888877 88899999999999999
Q ss_pred chhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 160 AYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
..+....++.|++|+++|++..++.+..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (385)
T TIGR00710 110 GSVISQALVRDIYPGEELSRIYSILMPV 137 (385)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 9999999999999999999999987653
No 40
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.66 E-value=2.7e-15 Score=122.16 Aligned_cols=136 Identities=18% Similarity=0.263 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHH
Q psy3312 22 QRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYV 101 (189)
Q Consensus 22 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (189)
++|.++..+++.....+.....++...+.+. +++|++.++.+++.+.+.++..
T Consensus 16 ~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~---------------------------~~~g~s~~~~~~~~s~~~~~~~ 68 (455)
T TIGR00892 16 WGWVVLGATFVSIGFSYAFPKAVTVFFKELQ---------------------------QIFQATYSETAWISSIMLAVLY 68 (455)
T ss_pred cchHHHHHHHHHHHHHHhhhcchhhhHHHHH---------------------------HHhCcchhHHHHHHHHHHHHHH
Confidence 4677777777777666667667888888888 8999999999999999999999
Q ss_pred HhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHH-HHHHHhhccccchhHHHHHHHhhcCccchhhH
Q psy3312 102 LNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILC-ARFIVGLGQGPAYPSMNVILAQWVPKTERGRM 180 (189)
Q Consensus 102 ~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~ 180 (189)
++.++.|+++||+|||++++.+.++..++.++++++++ ++.+++ .|+++|++.+...+....++.++++ ++|+++
T Consensus 69 ~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a 144 (455)
T TIGR00892 69 AGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSN---VIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLA 144 (455)
T ss_pred HhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHH
Confidence 99999999999999999999999999998888888877 666654 5789999998777777888899995 799999
Q ss_pred HHHHhhcC
Q psy3312 181 GALVFAGS 188 (189)
Q Consensus 181 ~~~~~~~~ 188 (189)
.++.+++.
T Consensus 145 ~g~~~~~~ 152 (455)
T TIGR00892 145 NGLAMAGS 152 (455)
T ss_pred HHHHHhcc
Confidence 99988664
No 41
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.66 E-value=2.1e-15 Score=117.77 Aligned_cols=126 Identities=34% Similarity=0.525 Sum_probs=109.0
Q ss_pred HHHHHHHHHHhhHHHHHH-HhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhhhhhhhh
Q psy3312 32 LAFALTYVQRFCLSMAIT-EMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGALI 110 (189)
Q Consensus 32 l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 110 (189)
++.+..........+..+ .+. +++|.+..+.+++.+.+.++..++.++.|++
T Consensus 3 l~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l 55 (352)
T PF07690_consen 3 LAFFLSGFGFSIISPALPLYLA---------------------------EELGLSPSQIGLLFSAFFLGSALFSPFAGYL 55 (352)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHH---------------------------CCSTTTSHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------------------HccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666777777 777 8899999999999999999999999999999
Q ss_pred hhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 111 AERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 111 ~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
+||+|||+++..+.++.+++..+..++++ .+.+++.|++.|++.+...+....++.|++|+++|++..++...+
T Consensus 56 ~dr~g~r~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 129 (352)
T PF07690_consen 56 SDRFGRRRVLIIGLLLFALGSLLLAFASN---FWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAG 129 (352)
T ss_dssp HHHS-HHHHHHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHH
T ss_pred HHHcCCeeeEeehhhhhhhHHHHhhhhhh---HHHHhhhccccccccccccccccccccccchhhhhhhccccccch
Confidence 99999999999999999999665555555 678999999999999999999999999999999999999987754
No 42
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.65 E-value=1.4e-15 Score=121.16 Aligned_cols=127 Identities=18% Similarity=0.207 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhhhhhhhh
Q psy3312 31 FLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGALI 110 (189)
Q Consensus 31 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 110 (189)
.+..+.............|.+. +++|++..+.+++.+.+.+++.+++++.|++
T Consensus 9 ~~~~~~~~~~~~~~~~~l~~~~---------------------------~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l 61 (382)
T PRK10091 9 ALGTFGLGMAEFGIMGVLTELA---------------------------HDVGISIPAAGHMISYYALGVVVGAPIIALF 61 (382)
T ss_pred HHHHHHHHhhHHHHHhChHHHH---------------------------HHcCCCHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555556667778887 8899999999999999999999999999999
Q ss_pred hhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 111 AERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 111 ~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
+||+|||+++..+.++.+++.++.+++++ ++.+++.|+++|++.+...+....++.|++|+++|++++++...+
T Consensus 62 ~dr~g~r~~~~~~~~~~~~~~~l~~~~~~---~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (382)
T PRK10091 62 SSRYSLKHILLFLVALCVIGNAMFTLSSS---YLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSG 135 (382)
T ss_pred HccCccHHHHHHHHHHHHHHHHHHHHhCc---HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHH
Confidence 99999999999999999999999998888 889999999999999988888889999999999999988876543
No 43
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.65 E-value=2.4e-15 Score=119.68 Aligned_cols=128 Identities=16% Similarity=0.148 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhhhhhhh
Q psy3312 30 GFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGAL 109 (189)
Q Consensus 30 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 109 (189)
.+++.+..........+..|.+. +++|.+..+.+++.+.+.++..+++++.|+
T Consensus 11 ~~~~~~~~~~~~~~~~~~lp~~~---------------------------~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~ 63 (381)
T PRK03633 11 LLCGLLLLTLAIAVLNTLVPLWL---------------------------AQEHLPTWQVGVVSSSYFTGNLVGTLLAGY 63 (381)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHH---------------------------HHcCCCHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 44555556666777788888888 789999999999999999999999999999
Q ss_pred hhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 110 IAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 110 l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
++||+|||+++..+.++.+++..+..++++ ++.+++.|+++|++.+...+.....+.+..++++|+++++++..+
T Consensus 64 l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (381)
T PRK03633 64 VIKRIGFNRSYYLASLIFAAGCAGLGLMVG---FWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMV 138 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 999999999999999999999988888877 889999999999999988888888888999999999999987653
No 44
>PRK10504 putative transporter; Provisional
Probab=99.65 E-value=3.8e-15 Score=121.52 Aligned_cols=128 Identities=16% Similarity=0.222 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhhhhhh
Q psy3312 29 LGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGA 108 (189)
Q Consensus 29 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 108 (189)
+..++.+....+...+....|.+. +++|+++.+.+++.+.+.++.+++.++.|
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~p~~~---------------------------~~~g~s~~~~~~~~~~~~~~~~~~~~~~g 66 (471)
T PRK10504 14 IVAFGFFMQSLDTTIVNTALPSMA---------------------------QSLGESPLHMHMVIVSYVLTVAVMLPASG 66 (471)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH---------------------------HHhCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777777777888889988 88999999999999999999999999999
Q ss_pred hhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312 109 LIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFA 186 (189)
Q Consensus 109 ~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 186 (189)
+++||+|||+++..+.++.+++.+++.++++ ++.+++.|+++|++.+...+....++.|++|+++|+++.++...
T Consensus 67 ~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (471)
T PRK10504 67 WLADRVGVRNIFFTAIVLFTLGSLFCALSGT---LNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTL 141 (471)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 9999999999999999998888888887766 88899999999999999999999999999999999999888764
No 45
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.64 E-value=5.1e-15 Score=121.91 Aligned_cols=144 Identities=24% Similarity=0.308 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHH
Q psy3312 22 QRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYV 101 (189)
Q Consensus 22 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (189)
..+.++.++.++.+....+...++...+.+..+.. ..+.+.+..+.+++.+...++.+
T Consensus 13 ~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~ig~~ 70 (502)
T TIGR00887 13 QHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYY----------------------HGKGPLPSSVSAAVNGSASIGTL 70 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------------------cCcccchHHHHHHHHHHHHHHHH
Confidence 45556666788888888888888888887651000 01234455677899999999999
Q ss_pred HhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhch---hhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchh
Q psy3312 102 LNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSF---GAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERG 178 (189)
Q Consensus 102 ~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~ 178 (189)
++.++.|+++||+|||+++..++++..++.++..++++.. +++.++++|+++|++.|..++....+++|++|+++|+
T Consensus 71 ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg 150 (502)
T TIGR00887 71 AGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRG 150 (502)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHH
Confidence 9999999999999999999999999999988887765421 1568899999999999999999999999999999999
Q ss_pred hHHHHHhhc
Q psy3312 179 RMGALVFAG 187 (189)
Q Consensus 179 ~~~~~~~~~ 187 (189)
++.++.+..
T Consensus 151 ~~~~~~~~~ 159 (502)
T TIGR00887 151 AMMAAVFAM 159 (502)
T ss_pred HHHHHHHHH
Confidence 999987653
No 46
>PRK12382 putative transporter; Provisional
Probab=99.64 E-value=3e-15 Score=119.36 Aligned_cols=108 Identities=21% Similarity=0.248 Sum_probs=91.3
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHH---hh--chhhHHHHHHHHHHh
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLA---AR--SFGAVGILCARFIVG 154 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~r~l~G 154 (189)
+++|++..+.+++.+.+.+++.+++++.|+++||+|||+++..+.+...++.+..... +. ..+++.+++.|+++|
T Consensus 44 ~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 123 (392)
T PRK12382 44 HDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILG 123 (392)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999888776655432221 11 112788999999999
Q ss_pred hccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 155 LGQGPAYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 155 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
++.+...+....++.|++|+++|++++++...+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~ 156 (392)
T PRK12382 124 FGESQLLTGALTWGLGLVGPKHSGKVMSWNGMA 156 (392)
T ss_pred HHHHHHHHHHHHHHHhhCCccccchhhhHHHHH
Confidence 999988888889999999999999999886553
No 47
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.63 E-value=6.7e-15 Score=117.95 Aligned_cols=134 Identities=16% Similarity=0.134 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHH
Q psy3312 23 RYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVL 102 (189)
Q Consensus 23 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (189)
.+...++..+..+........+.+..+.+. +++|+++.+.++..+.+.+++.+
T Consensus 11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~s~~~~~~~~~~~~~~~~~ 63 (406)
T PRK15402 11 ALLFPLCLVLFEFATYIANDMIQPGMLAVV---------------------------EDFNAGAEWVPTSMTAYLAGGMF 63 (406)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHhcchHHHH---------------------------HHhCCCHHHHHHHHHHHHHHHHH
Confidence 344444455555566666666667777777 88999999999999999999999
Q ss_pred hhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHH
Q psy3312 103 NHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGA 182 (189)
Q Consensus 103 ~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~ 182 (189)
+.++.|+++||+|||+++..+.+...++.++..++++ ++.+++.|+++|++.+...+....++.|++|+++|++..+
T Consensus 64 ~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 140 (406)
T PRK15402 64 LQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQS---IEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITA 140 (406)
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHH
Confidence 9999999999999999999999999999888888877 8889999999999998888888999999999999988877
Q ss_pred HHhh
Q psy3312 183 LVFA 186 (189)
Q Consensus 183 ~~~~ 186 (189)
+...
T Consensus 141 ~~~~ 144 (406)
T PRK15402 141 LMAN 144 (406)
T ss_pred HHHH
Confidence 7643
No 48
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.61 E-value=7.7e-15 Score=115.03 Aligned_cols=108 Identities=18% Similarity=0.116 Sum_probs=96.6
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhch--hhHHHHHHHHHHhhcc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSF--GAVGILCARFIVGLGQ 157 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~ 157 (189)
.+++.+..+.+++.+.+.++..++.++.|+++||+|||+++..+.++..++..+..+..... +++.+++.|+++|++.
T Consensus 27 ~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 106 (365)
T TIGR00900 27 LAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQ 106 (365)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 67888999999999999999999999999999999999999999998888888777776110 1889999999999999
Q ss_pred ccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 158 GPAYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 158 g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
+...+...+++.|++|+++|++..++.+.+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (365)
T TIGR00900 107 AFFTPAYQAMLPDLVPEEQLTQANSLSQAV 136 (365)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhHHHHH
Confidence 999999999999999999999999987654
No 49
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.61 E-value=1.1e-14 Score=116.42 Aligned_cols=102 Identities=18% Similarity=0.197 Sum_probs=92.1
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP 159 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (189)
++++.+..+.+++.+.+.+++.+..++.|+++||+|||+++..+.++.+++.+++.+..+ . ++.|+++|++.+.
T Consensus 31 ~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~---~---~~~r~l~G~~~a~ 104 (393)
T PRK11195 31 KELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIH---P---LLAYGLVGIGAAA 104 (393)
T ss_pred HHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHH---H---HHHHHHHHHHHHH
Confidence 678888889999999999999999999999999999999999999999888877666544 2 6789999999999
Q ss_pred chhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 160 AYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
..|...+++.|++|+++|+++.++....
T Consensus 105 ~~pa~~a~i~~~~~~~~~~~a~~~~~~~ 132 (393)
T PRK11195 105 YSPAKYGILTELLPGEKLVKANGWMEGS 132 (393)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 9999999999999999999999987643
No 50
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.61 E-value=1.5e-14 Score=115.50 Aligned_cols=105 Identities=19% Similarity=0.266 Sum_probs=95.8
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP 159 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (189)
+++|+++.+.+++.+.+.++..++.++.|+++||+|||+++..+.+...++.++..+.++ ++.+++.|++.|++.+.
T Consensus 36 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~~ 112 (394)
T PRK11652 36 RDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHS---LTVLIAASAIQGLGTGV 112 (394)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHhhhhH
Confidence 889999999999999999999999999999999999999999999999999888888777 88999999999999888
Q ss_pred chhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 160 AYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
..+....+..|++++++|+++.++...+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (394)
T PRK11652 113 GGVMARTLPRDLYEGTQLRHANSLLNMG 140 (394)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 8888888999999999999888776543
No 51
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.60 E-value=1.2e-14 Score=114.08 Aligned_cols=137 Identities=19% Similarity=0.246 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHH
Q psy3312 23 RYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVL 102 (189)
Q Consensus 23 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (189)
+++.+.+..++....+.....++++.+.+. +++++|+.|.+++.++..+...+
T Consensus 12 ~~~~L~~S~~af~v~F~VW~l~s~l~~~i~---------------------------~~~~LS~~q~~ll~aiPil~Gal 64 (417)
T COG2223 12 ARRNLWLSTLAFDVGFMVWTLFSPLGVFIK---------------------------SDFGLSEGQKGLLVAIPILVGAL 64 (417)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhc---------------------------cccCCCHHHHHHHHHHHHHHhHH
Confidence 344555577777788888888999999998 89999999999999999999999
Q ss_pred hhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHH
Q psy3312 103 NHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGA 182 (189)
Q Consensus 103 ~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~ 182 (189)
..++.|.+.||+|.|++..++.++..+..+...++.+..++|.+++.+++.|++ |..++..+..+++|+||+++|.++|
T Consensus 65 lRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlG 143 (417)
T COG2223 65 LRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALG 143 (417)
T ss_pred HHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHH
Confidence 999999999999999999999999999999999998866678999999999997 4578889999999999999999999
Q ss_pred HHhhc
Q psy3312 183 LVFAG 187 (189)
Q Consensus 183 ~~~~~ 187 (189)
++-.|
T Consensus 144 I~g~G 148 (417)
T COG2223 144 IAGAG 148 (417)
T ss_pred Hhccc
Confidence 98744
No 52
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.60 E-value=1.9e-14 Score=115.84 Aligned_cols=130 Identities=21% Similarity=0.195 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhhhhhhh
Q psy3312 30 GFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGAL 109 (189)
Q Consensus 30 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 109 (189)
..+.++.........++..|.+. +++|++..+.+++.+.+.+++.+++++.|+
T Consensus 8 ~~~~f~~~G~~~~~~~~l~~~~~---------------------------~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~ 60 (410)
T TIGR00885 8 ITSLFALWGFANDITNPMVPQFQ---------------------------QAFTLTAFQAALVQSAFYGGYFIMAIPAAI 60 (410)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHH---------------------------HHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455566778888887 899999999999999999999999999999
Q ss_pred hhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312 110 IAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFA 186 (189)
Q Consensus 110 l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 186 (189)
+.||+|||+++..+.++.+++.+++..+....+++.+++.|++.|+|.|...+..+.++.++.|+++|++..++.+.
T Consensus 61 l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (410)
T TIGR00885 61 FMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQS 137 (410)
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHH
Confidence 99999999999999999999988765543222388899999999999999999999999999999999998887654
No 53
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.60 E-value=9.9e-15 Score=118.25 Aligned_cols=137 Identities=19% Similarity=0.301 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHH
Q psy3312 23 RYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVL 102 (189)
Q Consensus 23 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (189)
++..+....+.+...+..+..+....|.+. + +|+++.+.+++.+.+.++..+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---------------------------~-~g~s~~~~g~~~~~~~~~~~~ 76 (438)
T TIGR00712 25 RWQVFLGIFFGYAAYYLVRKNFALAMPYLV---------------------------E-QGFSKGELGFALSAISIAYGF 76 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHhhhHHHH---------------------------H-cCCCHhHhHHHHHHHHHHHHH
Confidence 455555566666677777777777777775 4 589999999999999999999
Q ss_pred hhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhc-hhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHH
Q psy3312 103 NHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARS-FGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMG 181 (189)
Q Consensus 103 ~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~ 181 (189)
+.++.|+++||+|||+++..+.++.+++.++....+.. .+++.+.+.|++.|++.+..++.....+.|++|+++|++++
T Consensus 77 ~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~ 156 (438)
T TIGR00712 77 SKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIV 156 (438)
T ss_pred hhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHH
Confidence 99999999999999999999999988888876665321 12667788999999999998898899999999999999999
Q ss_pred HHHhhc
Q psy3312 182 ALVFAG 187 (189)
Q Consensus 182 ~~~~~~ 187 (189)
++.+.+
T Consensus 157 ~~~~~~ 162 (438)
T TIGR00712 157 SIWNCA 162 (438)
T ss_pred HHHHHH
Confidence 997654
No 54
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.60 E-value=2e-14 Score=114.66 Aligned_cols=104 Identities=24% Similarity=0.301 Sum_probs=96.7
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP 159 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (189)
+++|.+..+.++..+.+.++..+++++.|+++||+|||+.+..+.+...++..+....++ .+.+++.|+++|++.+.
T Consensus 31 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~---~~~~~~~~~l~g~~~~~ 107 (392)
T PRK10473 31 ADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAET---SSLFLAGRFLQGIGAGC 107 (392)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCc---HHHHHHHHHHHHhhhhH
Confidence 889999999999999999999999999999999999999999999999999988888777 77889999999999998
Q ss_pred chhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312 160 AYPSMNVILAQWVPKTERGRMGALVFA 186 (189)
Q Consensus 160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~ 186 (189)
..+....++.|++|+++|+++.++.+.
T Consensus 108 ~~~~~~~~i~~~~~~~~r~~~~~~~~~ 134 (392)
T PRK10473 108 CYVVAFAILRDTLDDRRRAKVLSLLNG 134 (392)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 889999999999999999999988764
No 55
>TIGR00898 2A0119 cation transport protein.
Probab=99.60 E-value=6.8e-15 Score=121.00 Aligned_cols=107 Identities=26% Similarity=0.421 Sum_probs=99.3
Q ss_pred ccceeeecc---ccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHH
Q psy3312 77 NKHYEFDWD---ERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIV 153 (189)
Q Consensus 77 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~ 153 (189)
...+|++++ ..+.+++.+++.++.+++.++.|+++||+|||+++.++.++..++.++.+++++ ++.+++.|++.
T Consensus 114 ~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~r~l~ 190 (505)
T TIGR00898 114 TIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPN---YTVFLVFRLLV 190 (505)
T ss_pred cEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHccc---HHHHHHHHHHH
Confidence 346788888 888999999999999999999999999999999999999999999999988888 88999999999
Q ss_pred hhccccchhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312 154 GLGQGPAYPSMNVILAQWVPKTERGRMGALVFA 186 (189)
Q Consensus 154 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 186 (189)
|++.+...+....++.|++|+++|+++.++...
T Consensus 191 G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~ 223 (505)
T TIGR00898 191 GMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQV 223 (505)
T ss_pred HhhccchHHHHHHHhheecChhhhHHHHHHHHH
Confidence 999999999999999999999999999887744
No 56
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.59 E-value=1.8e-14 Score=112.05 Aligned_cols=127 Identities=36% Similarity=0.628 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhhhhhhhh
Q psy3312 31 FLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGALI 110 (189)
Q Consensus 31 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 110 (189)
.+..+.............+.+. ++++.+..+.+++.+...++..++.++.|++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 57 (352)
T cd06174 5 FLGFFLSGLDRGLLSPALPLLA---------------------------EDLGLSASQAGLIVSAFSLGYALGSLLAGYL 57 (352)
T ss_pred HHHHHHHHHhhhhhHhhHHHHH---------------------------HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3444555566666777777777 7788999999999999999999999999999
Q ss_pred hhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 111 AERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 111 ~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
+||+|||+.+..+.++..++.++..+.++ ++.+++.|++.|++.+...+....++.|++|+++|++..++.+.+
T Consensus 58 ~d~~g~r~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (352)
T cd06174 58 SDRFGRRRVLLLGLLLFALGSLLLAFASS---LWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAG 131 (352)
T ss_pred HHHhCCchhhHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHH
Confidence 99999999999999999999998888876 889999999999999999999999999999999999999987654
No 57
>PTZ00207 hypothetical protein; Provisional
Probab=99.57 E-value=5.8e-14 Score=116.63 Aligned_cols=138 Identities=16% Similarity=0.134 Sum_probs=108.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHH
Q psy3312 20 ISQRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWG 99 (189)
Q Consensus 20 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (189)
...||..+......... ......++...+.+. +++|++..+.+++.++. ..
T Consensus 23 e~~Rw~~lva~~~~~~~-~g~~y~fsv~s~~L~---------------------------~~lgls~~~l~~i~svg-~~ 73 (591)
T PTZ00207 23 EPRRFALLVLGAFCSIC-TSFMYAFNLISGAMQ---------------------------ARYNLTQRDLSTITTVG-IA 73 (591)
T ss_pred ccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHH---------------------------HHhCcCHHHHHHHHHHH-HH
Confidence 34466555533333322 233445667777887 89999999999988763 44
Q ss_pred HHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhc---hhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccc
Q psy3312 100 YVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARS---FGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTE 176 (189)
Q Consensus 100 ~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~ 176 (189)
..+.+++.|++.||+|+|+++.++.++.+++.++.+++.+. .+++.+.+.|++.|++.+...+.....+.+||| ++
T Consensus 74 ~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~ 152 (591)
T PTZ00207 74 VGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN 152 (591)
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh
Confidence 56678889999999999999999999999999999887221 128899999999999999888889999999996 78
Q ss_pred hhhHHHHHhhc
Q psy3312 177 RGRMGALVFAG 187 (189)
Q Consensus 177 r~~~~~~~~~~ 187 (189)
||++.|+...+
T Consensus 153 RG~a~Gi~~~~ 163 (591)
T PTZ00207 153 RGAVVAIMKTF 163 (591)
T ss_pred hHHHHHHHHHH
Confidence 99999987654
No 58
>PRK11043 putative transporter; Provisional
Probab=99.56 E-value=7.6e-14 Score=111.64 Aligned_cols=103 Identities=23% Similarity=0.320 Sum_probs=93.5
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP 159 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (189)
+++|+++.+.+++.+++.++..++.+++|+++||+|||+++..+.++..++.++..+.++ ++.+++.|+++|++.+.
T Consensus 34 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~~~~~ 110 (401)
T PRK11043 34 ADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVES---AAQLLVLRFVQAVGVCS 110 (401)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHhhhHH
Confidence 889999999999999999999999999999999999999999999999988888888777 88999999999999887
Q ss_pred chhHHHHHHHhhcCccchhhHHHHHh
Q psy3312 160 AYPSMNVILAQWVPKTERGRMGALVF 185 (189)
Q Consensus 160 ~~~~~~~~~~~~~~~~~r~~~~~~~~ 185 (189)
..+....++.|++|+++|++..+...
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (401)
T PRK11043 111 AAVIWQALVIDRYPAQKANRVFATIM 136 (401)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 77888889999999988887776653
No 59
>PRK10054 putative transporter; Provisional
Probab=99.55 E-value=1.1e-13 Score=110.84 Aligned_cols=105 Identities=10% Similarity=0.093 Sum_probs=94.2
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP 159 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (189)
+++|++..+.+++.+.+.++.++.+++.|+++||+|||+++..+.+...++.++..+.++ ++.+++.|.+.|.+.+.
T Consensus 36 ~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~ 112 (395)
T PRK10054 36 RQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNN---VTLVVLFFALINCAYSV 112 (395)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999888888888877 77778888888887777
Q ss_pred chhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 160 AYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
..+....+..|.+|+++|+++.++.+..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 140 (395)
T PRK10054 113 FSTVLKAWFADNLSSTSKTKIFSLNYTM 140 (395)
T ss_pred HHHHHHHHHHHhcCHhHHHHHHHHHHHH
Confidence 7788889999999999999998887653
No 60
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.54 E-value=8.7e-15 Score=123.40 Aligned_cols=131 Identities=16% Similarity=0.172 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhhhhhhh
Q psy3312 30 GFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGAL 109 (189)
Q Consensus 30 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 109 (189)
..+..+........++...+.+. ++++++.++.|++.+.+.+++.++.++.++
T Consensus 38 ~~~~~~~~~~~~g~~~~~l~~ie---------------------------k~F~lss~~~G~i~s~~~i~~~~~~i~v~~ 90 (633)
T TIGR00805 38 LTCAQLQGLLYNGLVNSSLTTIE---------------------------RRFKLSTSSSGLINGSYEIGNLLLIIFVSY 90 (633)
T ss_pred HHHHHHHHHHHHHHHHhhchhhh---------------------------hhhCCCCCcceeeeehhhHHHHHHHHHHHH
Confidence 34455555556666777777777 899999999999999999999999999999
Q ss_pred hhhhhCCchhHHHHHHHHHHHHHHHHHHhh------------------------------------------------ch
Q psy3312 110 IAERYGGKYVLGFGLLVSTLATLATPLAAR------------------------------------------------SF 141 (189)
Q Consensus 110 l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~------------------------------------------------~~ 141 (189)
+.||+|||+.+.+++++.+++.+++++.+- ..
T Consensus 91 ~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (633)
T TIGR00805 91 FGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESL 170 (633)
T ss_pred hhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCc
Confidence 999999999999999999999998877630 00
Q ss_pred hhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 142 GAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 142 ~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
.+..++++|+++|+|.+..++...+++.|++|+++|++.+++++.+
T Consensus 171 ~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~ 216 (633)
T TIGR00805 171 MWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESI 216 (633)
T ss_pred eehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHH
Confidence 1456789999999999999999999999999999999999998764
No 61
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.54 E-value=3.7e-13 Score=107.59 Aligned_cols=125 Identities=22% Similarity=0.177 Sum_probs=101.8
Q ss_pred HHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccc-----hhHHHHHHHHHHHHhhhh
Q psy3312 32 LAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERT-----QGLILSSFFWGYVLNHIP 106 (189)
Q Consensus 32 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 106 (189)
++.+..........+..|.+. +++|++..+ .+++.+++.++..++.++
T Consensus 21 ~~~~~~~~~~~~~~~~l~~~~---------------------------~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 73 (408)
T PRK09874 21 LGCFLTGAAFSLVMPFLPLYV---------------------------EQLGVTGHSALNMWSGLVFSITFLFSAIASPF 73 (408)
T ss_pred HHHHHHHHHHHHhhhhHHHHH---------------------------HHhCCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555666777777 677777554 478888999999999999
Q ss_pred hhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312 107 GALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFA 186 (189)
Q Consensus 107 ~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 186 (189)
.|+++||+|||+++..+.+..+++.++..+.++ ++.+++.|++.|++.+ ..+....++.+++|+++|+++.++...
T Consensus 74 ~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (408)
T PRK09874 74 WGGLADRKGRKIMLLRSALGMGIVMVLMGLAQN---IWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLST 149 (408)
T ss_pred HHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHH
Confidence 999999999999999999999888888877777 8889999999999754 567778899999999999999888765
Q ss_pred c
Q psy3312 187 G 187 (189)
Q Consensus 187 ~ 187 (189)
+
T Consensus 150 ~ 150 (408)
T PRK09874 150 G 150 (408)
T ss_pred H
Confidence 3
No 62
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.54 E-value=1.7e-13 Score=109.86 Aligned_cols=105 Identities=20% Similarity=0.279 Sum_probs=97.1
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP 159 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (189)
+++|+++.+.+++.+...+...+..++.|+++||+|||+++..+.++..++.++..+.++ ++.+++.|+++|++.+.
T Consensus 39 ~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~---~~~l~~~~~l~g~~~~~ 115 (400)
T PRK11646 39 DQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHE---PWLLWLSCILSGLGGTL 115 (400)
T ss_pred HHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999998888776 88899999999999888
Q ss_pred chhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 160 AYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
..+...+++.+++|+++|+++.++.+..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 143 (400)
T PRK11646 116 FDPPRTALVIKLIRPHQRGRFFSLLMMQ 143 (400)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 8888899999999999999999987653
No 63
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.53 E-value=6.2e-14 Score=111.04 Aligned_cols=105 Identities=27% Similarity=0.382 Sum_probs=98.1
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP 159 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (189)
+++|+++.+.+++.+.+.++..++.++.|+++||+|||+++..+.++..++..+..+.++ ++.+++.|+++|++.+.
T Consensus 19 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~l~g~~~~~ 95 (377)
T PRK11102 19 ADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQT---IDQLIYMRFLHGLAAAA 95 (377)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999998888877 88899999999999998
Q ss_pred chhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 160 AYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
..+....++.|++|+++|+++.++.+.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (377)
T PRK11102 96 ASVVINALMRDMFPKEEFSRMMSFVTLV 123 (377)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 8899999999999999999999987653
No 64
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.52 E-value=1.4e-13 Score=110.40 Aligned_cols=108 Identities=15% Similarity=0.012 Sum_probs=91.5
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHH-hhchhhHHHHHHHHHHhhccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLA-ARSFGAVGILCARFIVGLGQG 158 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~l~G~~~g 158 (189)
+++|+++.+.+++.+.+.++..++.++.|++.||+|||+++..+.++..++.+++... ....+++.+++.|+++|++.+
T Consensus 41 ~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~ 120 (402)
T TIGR00897 41 KALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYP 120 (402)
T ss_pred HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchH
Confidence 6789999999999999999999999999999999999999999999988887654321 111127778899999999988
Q ss_pred cchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 159 PAYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
...+.....+.+++|+++|+++.|+.+.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 149 (402)
T TIGR00897 121 LFAYSFLVWVVYNTKQDNLSSAVGWFWAV 149 (402)
T ss_pred HHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 77777788889999999999999987653
No 65
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.51 E-value=2.4e-13 Score=111.66 Aligned_cols=106 Identities=13% Similarity=0.145 Sum_probs=90.8
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhh-hCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAER-YGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQG 158 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g 158 (189)
+++|++..+..++.+.+.....+..+++|+++|| +||||++..+.+++.++.+++.++.+. ...+.++|+++|+|.|
T Consensus 43 ~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~--~~ll~~~~~l~~ig~g 120 (489)
T PRK10207 43 KQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLK--PDLIFIALGTIAVGNG 120 (489)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccc--hhHHHHHHHHHHhccc
Confidence 7899999999999999998888888999999999 999999999999999999988887652 2235588999999999
Q ss_pred cchhHHHHHHHhhcCccc--hhhHHHHHhhc
Q psy3312 159 PAYPSMNVILAQWVPKTE--RGRMGALVFAG 187 (189)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~ 187 (189)
...+...+++.|++|+++ |++++++++.+
T Consensus 121 ~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~ 151 (489)
T PRK10207 121 LFKANPASLLSKCYPPKDPRLDGAFTLFYMS 151 (489)
T ss_pred cccCCHHHHHHHhcCCCchhhhcchhHHHHH
Confidence 999999999999998874 46666666543
No 66
>KOG0254|consensus
Probab=99.51 E-value=2.3e-13 Score=112.51 Aligned_cols=98 Identities=22% Similarity=0.314 Sum_probs=92.9
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHH
Q psy3312 87 RTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNV 166 (189)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~ 166 (189)
.+.+++.+...++..+++++.|+++|++|||+.++++.+++.++.++.+++++ .++++++|++.|+|.|+.....+.
T Consensus 89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~---~~~l~~GR~l~G~g~G~~~~~~pi 165 (513)
T KOG0254|consen 89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPS---WYQLIVGRILTGLGVGGASVLAPV 165 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHhccchhhhhhcchh
Confidence 45689999999999999999999999999999999999999999999999998 889999999999999999999999
Q ss_pred HHHhhcCccchhhHHHHHhhc
Q psy3312 167 ILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 167 ~~~~~~~~~~r~~~~~~~~~~ 187 (189)
+++|..|++.||...+..++.
T Consensus 166 y~sEiap~~~RG~l~~~~~l~ 186 (513)
T KOG0254|consen 166 YISEIAPAHIRGTLVSLYQLF 186 (513)
T ss_pred hHhhcCChhhhHHHHHHHHHH
Confidence 999999999999998887653
No 67
>KOG2533|consensus
Probab=99.49 E-value=6.4e-13 Score=108.53 Aligned_cols=106 Identities=23% Similarity=0.444 Sum_probs=99.1
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP 159 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (189)
++.+....+++++.+++.++++++.++++.+.||++..+.+....+.+++..++.....+ ++.+++.|++.|+.+++
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s---~~~~ialr~llGl~es~ 150 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHS---FPGLIALRFLLGLFESG 150 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHhcc
Confidence 778888899999999999999999999999999999999999999888888877777777 89999999999999999
Q ss_pred chhHHHHHHHhhcCccchhhHHHHHhhcC
Q psy3312 160 AYPSMNVILAQWVPKTERGRMGALVFAGS 188 (189)
Q Consensus 160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 188 (189)
.+|....++..|+.++||++.++++++.+
T Consensus 151 ~wP~~~~~lg~wy~~~e~g~r~~~~~a~~ 179 (495)
T KOG2533|consen 151 GWPGVVAILGNWYGKSERGLRMGIWYASA 179 (495)
T ss_pred cchHHHHHHHhhcChhhhhhhHHHHHHhc
Confidence 99999999999999999999999998764
No 68
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.48 E-value=3.7e-13 Score=110.27 Aligned_cols=103 Identities=14% Similarity=0.170 Sum_probs=93.1
Q ss_pred eeccccchhHHHHHHHHHHHHhhhhhhhhhhh-hCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccc
Q psy3312 82 FDWDERTQGLILSSFFWGYVLNHIPGALIAER-YGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPA 160 (189)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~ 160 (189)
+|++..+.+++.+.+.++..+++++.|+++|| +|||+++.++.++.+++.++.+++++ .+.+.+.|.+.|++.|..
T Consensus 43 lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~---~~~~~~~~~l~g~g~g~~ 119 (475)
T TIGR00924 43 LGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIY---PDLIFYGLGTIAVGSGLF 119 (475)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhccc---HhHHHHHHHHHHhccccc
Confidence 89999999999999999999999999999999 89999999999999999998888766 677888999999999999
Q ss_pred hhHHHHHHHhhcCccc---hhhHHHHHhhc
Q psy3312 161 YPSMNVILAQWVPKTE---RGRMGALVFAG 187 (189)
Q Consensus 161 ~~~~~~~~~~~~~~~~---r~~~~~~~~~~ 187 (189)
.+...+++++++|+++ |+++.++++.+
T Consensus 120 ~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~ 149 (475)
T TIGR00924 120 KANPSSMVGKLYERGDMPRRDGGFTLFYMS 149 (475)
T ss_pred cCCHHHHHHHhcCCCCcccccceehhHHHH
Confidence 9999999999998765 77787776654
No 69
>KOG0255|consensus
Probab=99.46 E-value=1.9e-13 Score=113.06 Aligned_cols=101 Identities=23% Similarity=0.194 Sum_probs=94.6
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP 159 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (189)
+.++.+.....+..+++.+|..+|.+++|.++||+|||+++++++++..++.++.+++++ ++.+++.|++.|++.++
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~---~~~~~~~Rfl~G~~~~~ 187 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPN---YWMFLIFRFLSGFFGSG 187 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCc---HHHHHHHHHHHHhhccc
Confidence 344556677888899999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred chhHHHHHHHhhcCccchhhHHHH
Q psy3312 160 AYPSMNVILAQWVPKTERGRMGAL 183 (189)
Q Consensus 160 ~~~~~~~~~~~~~~~~~r~~~~~~ 183 (189)
.+.....+++|++++++|+.+..+
T Consensus 188 ~~~~~~~~~~E~~~~~~R~~~~~~ 211 (521)
T KOG0255|consen 188 PLTVGFGLVAEIVSPKQRGLALTL 211 (521)
T ss_pred hhHHhHhhheeecCcchhhHHHHH
Confidence 999999999999999999999887
No 70
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.44 E-value=1.8e-13 Score=107.73 Aligned_cols=103 Identities=16% Similarity=0.201 Sum_probs=91.3
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP 159 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (189)
+++|++.++.+++.+.+.+++.++.++.|+++||+|||+++..+.++..++.+.. ..++ .+.+++.|++.|++.+.
T Consensus 28 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~---~~~l~~~~~~~g~g~~~ 103 (355)
T TIGR00896 28 SALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPG---TALLFAGTALIGVGIAI 103 (355)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hhcc---HHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999998888777665 5555 77888999999999988
Q ss_pred chhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 160 AYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
..+....++.|++| ++|+++.++...+
T Consensus 104 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 130 (355)
T TIGR00896 104 INVLLPSLIKRDFP-QRVGLMTGLYSMA 130 (355)
T ss_pred HhccchHHHHHhCc-chhhHHHHHHHHH
Confidence 88888888999996 6899999887653
No 71
>KOG0252|consensus
Probab=99.41 E-value=5.8e-13 Score=105.66 Aligned_cols=143 Identities=17% Similarity=0.276 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHh
Q psy3312 24 YLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLN 103 (189)
Q Consensus 24 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (189)
.....+...+.+....+..+++...+-+..... ...+ ..=+.++...+.+..+..+|.+++
T Consensus 40 fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~-----------------~~~~--~~g~~ps~i~~~Vn~~A~vGti~G 100 (538)
T KOG0252|consen 40 FKAIIIAGMGFFTDSYDLFSISLVTKILGYLYY-----------------HGDE--SGGHYPSGVLALVNAAALVGTIFG 100 (538)
T ss_pred HHHHHHhhhhhcccchhhhhHHHHHHHHHHHhc-----------------CCCC--CCCcCCchHHHHHHHHHHHHHHHH
Confidence 445556778888888888887777666541100 0000 112345667788889999999999
Q ss_pred hhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhch----hhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhh
Q psy3312 104 HIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSF----GAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGR 179 (189)
Q Consensus 104 ~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~ 179 (189)
|+++|++.||+|||+++...+++..++++++++....+ -.+++.+.|++.|+|.|+-+|...++.+|....+.||+
T Consensus 101 Ql~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa 180 (538)
T KOG0252|consen 101 QLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGA 180 (538)
T ss_pred HHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccc
Confidence 99999999999999999999999999998777654433 24788899999999999999999999999999999998
Q ss_pred HHHHHh
Q psy3312 180 MGALVF 185 (189)
Q Consensus 180 ~~~~~~ 185 (189)
..+...
T Consensus 181 ~iaavF 186 (538)
T KOG0252|consen 181 FIAAVF 186 (538)
T ss_pred eeEEEE
Confidence 776544
No 72
>KOG2615|consensus
Probab=99.41 E-value=5.2e-13 Score=103.70 Aligned_cols=99 Identities=24% Similarity=0.201 Sum_probs=88.2
Q ss_pred ccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhH
Q psy3312 84 WDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPS 163 (189)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~ 163 (189)
.+..-.|.+-+.+.+.+.+.++.+|.++||+|||+++..+++..++...+.+.+.+ +..++..|++.|+.-| ....
T Consensus 65 ~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~---F~afv~aR~l~Gi~kg-nl~v 140 (451)
T KOG2615|consen 65 ASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRN---FAAFVLARFLGGIFKG-NLSV 140 (451)
T ss_pred ccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhccC-chHH
Confidence 45556789999999999999999999999999999999999999999999999998 7666677999999876 4577
Q ss_pred HHHHHHhhcCccchhhHHHHHhh
Q psy3312 164 MNVILAQWVPKTERGRMGALVFA 186 (189)
Q Consensus 164 ~~~~~~~~~~~~~r~~~~~~~~~ 186 (189)
..++++|.+++++|+++++....
T Consensus 141 ~rAiisdV~sek~r~l~ms~v~~ 163 (451)
T KOG2615|consen 141 IRAIISDVVSEKYRPLGMSLVGT 163 (451)
T ss_pred HHHHHHhhcChhhccceeeeeeh
Confidence 89999999999999999887654
No 73
>KOG3764|consensus
Probab=99.40 E-value=1.6e-12 Score=101.56 Aligned_cols=105 Identities=24% Similarity=0.240 Sum_probs=96.7
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP 159 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (189)
.+.+-..++.|++.+...+.+.+..++.|.+.||+|+|..+++|+++....++++++..+ +++++++|.+||+|.++
T Consensus 99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~s---y~~l~vAR~LQgvgsA~ 175 (464)
T KOG3764|consen 99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNS---YPMLFVARSLQGVGSAF 175 (464)
T ss_pred cCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcch---hHHHHHHHHHhhhhHHH
Confidence 345557789999999999999999999999999999999999999999999999999998 88999999999999999
Q ss_pred chhHHHHHHHhhcCcc-chhhHHHHHhhc
Q psy3312 160 AYPSMNVILAQWVPKT-ERGRMGALVFAG 187 (189)
Q Consensus 160 ~~~~~~~~~~~~~~~~-~r~~~~~~~~~~ 187 (189)
......+++++.+|.+ ||++++|+...+
T Consensus 176 ~~tsglamlAd~f~~d~er~~vmGialgf 204 (464)
T KOG3764|consen 176 ADTSGLAMLADVFPEDNERGSVMGIALGF 204 (464)
T ss_pred HHhhhHHHHHHHcccchhhhHHHHHHHHH
Confidence 9999999999999975 589999987543
No 74
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.40 E-value=2.6e-12 Score=101.59 Aligned_cols=125 Identities=22% Similarity=0.286 Sum_probs=96.1
Q ss_pred HHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeee--ccccchhHHHH-----HHHHHHHHhhhhhh
Q psy3312 36 LTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFD--WDERTQGLILS-----SFFWGYVLNHIPGA 108 (189)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-----~~~~~~~~~~~~~g 108 (189)
..+.++..+++..+.+. +++. .++.+.+.+.+ ...++..+++++.|
T Consensus 4 ~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G 56 (394)
T TIGR00883 4 VEWFDFYLYGFAAVLVF---------------------------HTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFG 56 (394)
T ss_pred hhHHHHHHHHHHHHHHH---------------------------HHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhh
Confidence 45677777787777776 3322 33444444433 23334457899999
Q ss_pred hhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchh-----hHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHH
Q psy3312 109 LIAERYGGKYVLGFGLLVSTLATLATPLAARSFG-----AVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGAL 183 (189)
Q Consensus 109 ~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~ 183 (189)
+++||+|||+++..+.++..++.++.+++++... .+.+++.|+++|++.+...+....++.|++|+++|++..++
T Consensus 57 ~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 136 (394)
T TIGR00883 57 HFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSF 136 (394)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHH
Confidence 9999999999999999999999998888876320 12578999999999999999999999999999999999887
Q ss_pred Hhhc
Q psy3312 184 VFAG 187 (189)
Q Consensus 184 ~~~~ 187 (189)
...+
T Consensus 137 ~~~~ 140 (394)
T TIGR00883 137 QQVG 140 (394)
T ss_pred HHHH
Confidence 7654
No 75
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.39 E-value=4.8e-13 Score=107.66 Aligned_cols=108 Identities=14% Similarity=0.099 Sum_probs=90.1
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHh--hchhhHHHHHHHHHHhhcc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAA--RSFGAVGILCARFIVGLGQ 157 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~r~l~G~~~ 157 (189)
++++.++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++........ ...+++.+++.|+++|++.
T Consensus 45 ~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 124 (417)
T PRK10489 45 QMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFG 124 (417)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 66777889999999999999999999999999999999999988877777665543211 1112778889999999998
Q ss_pred ccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 158 GPAYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 158 g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
+...+....++.+++|+++|+++.++.+.+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (417)
T PRK10489 125 SLGVTALLAATPALVGRENLMQAGAITMLT 154 (417)
T ss_pred HHHHHHHhhhhhhccCHHHHHHHHHHHHHH
Confidence 888888899999999999999999887643
No 76
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.39 E-value=4.6e-12 Score=113.41 Aligned_cols=101 Identities=19% Similarity=0.168 Sum_probs=86.1
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHH
Q psy3312 87 RTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNV 166 (189)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~ 166 (189)
...+++.+++.+++.++++++|+++||+|||++++++.++..+..++..++....+++.+++.|+++|++.+...+...+
T Consensus 47 ~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 126 (1146)
T PRK08633 47 ILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYG 126 (1146)
T ss_pred HHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHh
Confidence 44688889999999999999999999999999999988776666655544322222889999999999999999999999
Q ss_pred HHHhhcCccchhhHHHHHhhc
Q psy3312 167 ILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 167 ~~~~~~~~~~r~~~~~~~~~~ 187 (189)
+++|++|+++|++++++...+
T Consensus 127 ~i~~~~~~~~r~~~~~~~~~~ 147 (1146)
T PRK08633 127 IIPELVGKENLSRANGLLEAF 147 (1146)
T ss_pred hhHHhcCcccchhhhhHHHHH
Confidence 999999999999999988664
No 77
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.36 E-value=1.3e-11 Score=101.75 Aligned_cols=105 Identities=14% Similarity=0.129 Sum_probs=84.5
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhh-hCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAER-YGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQG 158 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g 158 (189)
+++|++..+.+++.+.+........++.|+++|| +|||+++..+.++.+++..++.++.+. .+.+.+.|+++|++.|
T Consensus 50 ~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~--~~~l~~~~~l~gig~g 127 (500)
T PRK09584 50 KQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHD--AGIVYMGMATIAVGNG 127 (500)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHhhh
Confidence 7899999888888877776666666789999999 599999999999999998888776431 4566788999999999
Q ss_pred cchhHHHHHHHhhcCccc--hhhHHHHHhh
Q psy3312 159 PAYPSMNVILAQWVPKTE--RGRMGALVFA 186 (189)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~--r~~~~~~~~~ 186 (189)
...+....++.|++|+++ |..+.++++.
T Consensus 128 ~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~ 157 (500)
T PRK09584 128 LFKANPSSLLSTCYEKDDPRLDGAFTMYYM 157 (500)
T ss_pred cccCCHHHHHHHhcCCCchhhhhcchHHHH
Confidence 888988999999998654 3445665543
No 78
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.34 E-value=9.4e-12 Score=97.88 Aligned_cols=107 Identities=8% Similarity=-0.024 Sum_probs=88.4
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP 159 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (189)
++++.+..+.+++.+...++..++.++.|++.||+|||+.+..+.++..++.++..+.++.. ...++...++.|++.+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~g~ 311 (377)
T TIGR00890 233 QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLN-DVLFLATVALVFFTWGG 311 (377)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccch-hHHHHHHHHHHHHHhcc
Confidence 56777888888999999999999999999999999999999999888888877766655422 33345567778888888
Q ss_pred chhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 160 AYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
..+..+.+++|.+|+++|++..|+.+..
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 339 (377)
T TIGR00890 312 TISLFPSLVSDIFGPANSAANYGFLYTA 339 (377)
T ss_pred chhccHHHHHHHhhhhhhhhHhHHHHHH
Confidence 8888888999999999999999988654
No 79
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.33 E-value=2.4e-11 Score=95.98 Aligned_cols=98 Identities=15% Similarity=0.046 Sum_probs=82.1
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHH-HHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGF-GLLVSTLATLATPLAARSFGAVGILCARFIVGLGQG 158 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g 158 (189)
+++|.++.+.+++.+.+.+...+.+++.|+++||+||||.++. +.+...++.++.+++++ ++.+++.|+++|.+.+
T Consensus 26 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~ 102 (375)
T TIGR00899 26 EEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRN---YFLLLVLGVLLSSFAS 102 (375)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcch---HHHHHHHHHHHHhhhh
Confidence 7899999999999999999999999999999999999887554 55555666677777776 7888889999988877
Q ss_pred cchhHHHHHHHhhcCccchhhH
Q psy3312 159 PAYPSMNVILAQWVPKTERGRM 180 (189)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~r~~~ 180 (189)
...+....+..|+.|+++|++.
T Consensus 103 ~~~p~~~~~~~~~~~~~~~~~~ 124 (375)
T TIGR00899 103 TANPQLFALAREHADRTGREAV 124 (375)
T ss_pred hhHHHHHHHHHHHhhhcchhhH
Confidence 7888888889999887777643
No 80
>KOG2504|consensus
Probab=99.32 E-value=9.8e-12 Score=102.27 Aligned_cols=137 Identities=21% Similarity=0.239 Sum_probs=121.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHH
Q psy3312 21 SQRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGY 100 (189)
Q Consensus 21 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (189)
.+-|.+.+..+++..........++...+.+. ++++.+.++++|+.++.....
T Consensus 42 G~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~---------------------------~~f~~s~~~~~~i~sl~~~~~ 94 (509)
T KOG2504|consen 42 GWGWVVVFASFLVNLSTDGLINSFGLLFEELM---------------------------DYFGSSSSQIAWIGSLLLGVY 94 (509)
T ss_pred CeeeeeeHhHHHHHHhhhcchheehhhHHHHH---------------------------HHhCCCccHHHHHHHHHHHHH
Confidence 34677878788888888888888888888887 899999999999999999999
Q ss_pred HHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHH-HHHHHHhhccccchhHHHHHHHhhcCccchhh
Q psy3312 101 VLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGIL-CARFIVGLGQGPAYPSMNVILAQWVPKTERGR 179 (189)
Q Consensus 101 ~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~ 179 (189)
.+..|+.+.+.||+|.|++.+.|.++.+++.++.+++++ .|.++ ..-++.|+|.|..+.....++..+| +++|+.
T Consensus 95 ~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~---i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~l 170 (509)
T KOG2504|consen 95 LLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATS---LWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRAL 170 (509)
T ss_pred HHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHH
Confidence 999999999999999999999999999999999999999 66654 4557789999999999999999999 589999
Q ss_pred HHHHHhhcC
Q psy3312 180 MGALVFAGS 188 (189)
Q Consensus 180 ~~~~~~~~~ 188 (189)
+.|+..+|+
T Consensus 171 A~Gia~~Gs 179 (509)
T KOG2504|consen 171 ATGIAVSGT 179 (509)
T ss_pred HHhhhhccC
Confidence 999988774
No 81
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.29 E-value=2.1e-13 Score=110.66 Aligned_cols=103 Identities=25% Similarity=0.396 Sum_probs=92.4
Q ss_pred cccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHH
Q psy3312 85 DERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSM 164 (189)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~ 164 (189)
+..+.+++.+...++..+|.++.|.++||+|||+.+.++.++..++.++..+++...+++.+.++|++.|++.|+..+..
T Consensus 44 ~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~ 123 (451)
T PF00083_consen 44 SSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVS 123 (451)
T ss_pred hHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34567888999999999999999999999999999999999999999999999822118899999999999999999999
Q ss_pred HHHHHhhcCccchhhHHHHHhhc
Q psy3312 165 NVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 165 ~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
..++.|..|+++|++..++...+
T Consensus 124 ~~~~~E~~~~~~R~~~~~~~~~~ 146 (451)
T PF00083_consen 124 PIYISEIAPPKHRGFLSSLFQLF 146 (451)
T ss_pred ccccccccccccccccccccccc
Confidence 99999999999999887776554
No 82
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.29 E-value=8.5e-11 Score=92.59 Aligned_cols=109 Identities=14% Similarity=0.077 Sum_probs=88.9
Q ss_pred eeeeccccchhHHHHHHH-HHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHh-hc-------hhhHHHHHHH
Q psy3312 80 YEFDWDERTQGLILSSFF-WGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAA-RS-------FGAVGILCAR 150 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~r 150 (189)
.++|++..+.+.+..+.. ++..++.+++|++.||+|+|+.+..+.++.++...+..+.. +. .+.+.+....
T Consensus 237 ~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (356)
T TIGR00901 237 LDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTI 316 (356)
T ss_pred HHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHH
Confidence 348889999888877655 67789999999999999999999888888877766555432 11 1156677788
Q ss_pred HHHhhccccchhHHHHHHHhhcCccchhhHHHHHhhcC
Q psy3312 151 FIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAGS 188 (189)
Q Consensus 151 ~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 188 (189)
++.+++.+...+...+++.|.+|+++||+.+|+.++..
T Consensus 317 ~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~ 354 (356)
T TIGR00901 317 TLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLS 354 (356)
T ss_pred HHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 88999999999999999999999999999999987653
No 83
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.29 E-value=1.2e-10 Score=95.74 Aligned_cols=104 Identities=14% Similarity=0.131 Sum_probs=79.4
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHH-HHHHhhchhhHHHHHHHHHHhhccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLA-TPLAARSFGAVGILCARFIVGLGQG 158 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~l~G~~~g 158 (189)
+++|++..+..+......++..++.++.|+++||+|||+++..+.+...+.... ....... +...+++++++.|++.+
T Consensus 279 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~ 357 (490)
T PRK10642 279 HNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSN-VIGLIFAGLLMLAVILN 357 (490)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 567777777777777888999999999999999999999988877654433332 2222221 15567788888888777
Q ss_pred cchhHHHHHHHhhcCccchhhHHHHH
Q psy3312 159 PAYPSMNVILAQWVPKTERGRMGALV 184 (189)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~r~~~~~~~ 184 (189)
...+....++.|.+|++.|++++++.
T Consensus 358 ~~~g~~~~~~~~~~p~~~Rg~~~g~~ 383 (490)
T PRK10642 358 CFTGVMASTLPAMFPTHIRYSALAAA 383 (490)
T ss_pred HHHHHHHHHHHHHCCCccchHHHHHH
Confidence 77777888899999999999998874
No 84
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.29 E-value=6.8e-11 Score=101.06 Aligned_cols=95 Identities=13% Similarity=0.136 Sum_probs=83.1
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHH
Q psy3312 90 GLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILA 169 (189)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~ 169 (189)
.+...+..++.+++.++.|+++||+|||+++.++.++.+++.++.++.++ ...+++.+++.|++.++.++....+++
T Consensus 598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s---~~~ll~~~~l~g~~~~~~~~~~~a~~a 674 (742)
T TIGR01299 598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNS---ESAMIALLCLFGGLSIAAWNALDVLTV 674 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456777899999999999999999999999999999999988888776 556777888888888888899999999
Q ss_pred hhcCccchhhHHHHHhhc
Q psy3312 170 QWVPKTERGRMGALVFAG 187 (189)
Q Consensus 170 ~~~~~~~r~~~~~~~~~~ 187 (189)
|++|+++|++++|+.+..
T Consensus 675 El~Pt~~Rgta~Gi~~~~ 692 (742)
T TIGR01299 675 ELYPSDKRATAFGFLNAL 692 (742)
T ss_pred HHcCHHHHHHHHHHHHHH
Confidence 999999999999998764
No 85
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.28 E-value=5.1e-11 Score=95.41 Aligned_cols=105 Identities=18% Similarity=0.120 Sum_probs=87.9
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP 159 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (189)
++.|++..+.+.+.+...++.+++.++.|++.||+|||+.+..+.+...++..+..+.++ .+.+.+..++.|++.++
T Consensus 248 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~ 324 (406)
T PRK11551 248 VGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPS---FAGMLLAGFAAGLFVVG 324 (406)
T ss_pred HhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCc---HHHHHHHHHHHHHHHHh
Confidence 557888889999999999999999999999999999999988877666666555555554 55666777788888877
Q ss_pred chhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 160 AYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
..+....+..|.+|+++|++..|+.+..
T Consensus 325 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~ 352 (406)
T PRK11551 325 GQSVLYALAPLFYPTQVRGTGVGAAVAV 352 (406)
T ss_pred HHHHHHHHHHHHcchhhhhhhhhHHHHh
Confidence 8888899999999999999999988654
No 86
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=99.27 E-value=7.4e-11 Score=96.61 Aligned_cols=106 Identities=15% Similarity=0.230 Sum_probs=83.5
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhh-CCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERY-GGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQG 158 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g 158 (189)
+++|+++.+.+.+.+.+.....++.+++|+++||+ ||||++.++.++..++.++....... ...+.+...+.++|.|
T Consensus 38 ~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~--~~~~~l~l~li~iG~G 115 (493)
T PRK15462 38 NQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIH--PSFLYLSLAIIVCGYG 115 (493)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHhcc
Confidence 66899999999999999999999999999999999 99999999999998888766543221 1223334444455666
Q ss_pred cchhHHHHHHHhhcCcc--chhhHHHHHhhc
Q psy3312 159 PAYPSMNVILAQWVPKT--ERGRMGALVFAG 187 (189)
Q Consensus 159 ~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~ 187 (189)
...+...++++|.+|++ +|.++.++++.+
T Consensus 116 ~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~ 146 (493)
T PRK15462 116 LFKSNVSCLLGELYEPTDPRRDGGFSLMYAA 146 (493)
T ss_pred cccccHHHHHHHHCCCCCccccceehHHHHH
Confidence 66677788999999876 688888888764
No 87
>TIGR00895 2A0115 benzoate transport.
Probab=99.26 E-value=6.4e-11 Score=93.89 Aligned_cols=105 Identities=17% Similarity=0.123 Sum_probs=83.2
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP 159 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (189)
++++.+..+.++..+...++.+++.++.|++.||+|||+.+....+......++.....+ .+..++..++.|++.+.
T Consensus 278 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~ 354 (398)
T TIGR00895 278 VELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFS---PTLLLLLGAIAGFFVNG 354 (398)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhC---HHHHHHHHHHHHHHHHH
Confidence 677888888999999999999999999999999999995555444433333333222333 55667788889999998
Q ss_pred chhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 160 AYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
..+....+++|.+|+++|+++.|+.+..
T Consensus 355 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 382 (398)
T TIGR00895 355 GQSGLYALMALFYPTAIRATGVGWAIGI 382 (398)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999987653
No 88
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.26 E-value=1e-10 Score=93.26 Aligned_cols=102 Identities=9% Similarity=-0.050 Sum_probs=93.7
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP 159 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (189)
+++|.++.+.+++.+...++.++..++.+++.||+|+|+.+.++.+...+...+.++.++ .+.++..++++|+..+.
T Consensus 233 ~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~q~l~g~~~~~ 309 (382)
T TIGR00902 233 QAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEA---FPLIFLLQILHCGTFAV 309 (382)
T ss_pred HHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhh---HHHHHHHHHHHHHHHHH
Confidence 458999999999999999999999999999999999999999999999999888888777 88888999999999999
Q ss_pred chhHHHHHHHhhcCccchhhHHHHHh
Q psy3312 160 AYPSMNVILAQWVPKTERGRMGALVF 185 (189)
Q Consensus 160 ~~~~~~~~~~~~~~~~~r~~~~~~~~ 185 (189)
..+....++.+. |+++|+++.++++
T Consensus 310 ~~~~~~~~i~~~-~~~~~~~~q~~~~ 334 (382)
T TIGR00902 310 CHLAAMRYIAAQ-PGSEIAKLQALYN 334 (382)
T ss_pred HHHHHHHHHHhC-CHhhHHHHHHHHH
Confidence 999999999998 9999999988875
No 89
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.24 E-value=2.7e-10 Score=94.77 Aligned_cols=101 Identities=13% Similarity=0.206 Sum_probs=88.1
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP 159 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (189)
.++|-+ ....|+.+...++..+..++.|+++|.||||.+++.+.++..++.++.+.+++ ...++.+..+.|+|.|.
T Consensus 72 ~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~---~~~~iag~~l~GvgaG~ 147 (599)
T PF06609_consen 72 ADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQN---MNTFIAGMVLYGVGAGV 147 (599)
T ss_pred HhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCc---HHHHHHHHHHHHHhhHH
Confidence 677654 56788889999999999999999999999999999999999999999999998 77999999999999776
Q ss_pred chhHHHHHHHhhcCccchhhHHHHHh
Q psy3312 160 AYPSMNVILAQWVPKTERGRMGALVF 185 (189)
Q Consensus 160 ~~~~~~~~~~~~~~~~~r~~~~~~~~ 185 (189)
.. .....++|..|.|.|+.+.++..
T Consensus 148 ~~-~~~~~isEl~p~k~R~~~~~~~~ 172 (599)
T PF06609_consen 148 QE-LAALAISELVPNKWRGLGLAIAS 172 (599)
T ss_pred HH-HHHHHHHHhcccchhhhHhHHHH
Confidence 65 45566899999999988776554
No 90
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=99.23 E-value=1.4e-11 Score=83.47 Aligned_cols=91 Identities=29% Similarity=0.433 Sum_probs=80.6
Q ss_pred HHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcC
Q psy3312 94 SSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVP 173 (189)
Q Consensus 94 ~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~ 173 (189)
+.+.++..++.++.|++.||+|||+.+..+.....++.++.....+ .+.+.+.+++.|++.+...+....++.|.+|
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 81 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSN---ITVLIIARFLQGFGAAFALVAGAALIADIYP 81 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHCC
Confidence 4566788899999999999999999999999888888887777666 7888899999999999889999999999999
Q ss_pred ccchhhHHHHHhhc
Q psy3312 174 KTERGRMGALVFAG 187 (189)
Q Consensus 174 ~~~r~~~~~~~~~~ 187 (189)
+++|++..++.+..
T Consensus 82 ~~~~~~~~~~~~~~ 95 (141)
T TIGR00880 82 PEERGVALGLMSAG 95 (141)
T ss_pred hhhhhHHHHHHHHh
Confidence 99999999987654
No 91
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.23 E-value=2.8e-10 Score=88.51 Aligned_cols=105 Identities=29% Similarity=0.460 Sum_probs=95.3
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCch-hHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKY-VLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQG 158 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g 158 (189)
+.+|.+..+.++..+...++..++.++.+++.||+|||+ .+..+.++..++.++....++ .+...+..++.|++.+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~g~~~~ 280 (352)
T cd06174 204 EVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPS---LALLLVALLLLGFGLG 280 (352)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHh
Confidence 345788889999999999999999999999999999999 999999999999888887776 7788899999999999
Q ss_pred cchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 159 PAYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
...+....++.|..|+++|++..++.+..
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (352)
T cd06174 281 FAFPALLTLASELAPPEARGTASGLFNTF 309 (352)
T ss_pred ccchhHHHHHHhhcCHHHHHHHHHHHHHH
Confidence 99999999999999999999999987653
No 92
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.22 E-value=1.5e-10 Score=103.83 Aligned_cols=98 Identities=17% Similarity=0.117 Sum_probs=78.4
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHH---HHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhH
Q psy3312 87 RTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFG---LLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPS 163 (189)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~ 163 (189)
...++..+++.+.+++.++++|+++||+|||+++... .+...+..+......+ ++.++++|+++|++.+...++
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s---~~~l~~~~~l~gi~~a~~~p~ 128 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNS---VPLLFAALFLMGIHSALFGPI 128 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHhhchH
Confidence 3467778899999999999999999999999976432 2222222222222344 889999999999999999999
Q ss_pred HHHHHHhhcCccchhhHHHHHhhc
Q psy3312 164 MNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 164 ~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
..+++.+++|+++|++++|+.+++
T Consensus 129 ~~a~l~~~~~~~~~~~a~~~~~~~ 152 (1140)
T PRK06814 129 KYSILPDHLNKDELLGANALVEAG 152 (1140)
T ss_pred HHHhhHhhcCccccchhhHHHHHH
Confidence 999999999999999999998765
No 93
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.21 E-value=3.1e-10 Score=92.84 Aligned_cols=107 Identities=12% Similarity=0.068 Sum_probs=77.4
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP 159 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (189)
+++|++..+.++......++.+++.++.|+++||+|||+.+........+...+..+..... .+...+.+++.|+...+
T Consensus 287 ~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~G~~~~~ 365 (467)
T PRK09556 287 QELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATS-EYMYLASLFALGFLVFG 365 (467)
T ss_pred HccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHhh
Confidence 67899999999999999999999999999999999999877665444433332222222111 55556777777865443
Q ss_pred chhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 160 AYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
..........|.+|+++||++.|+.+..
T Consensus 366 ~~~~~~~~~~~~~p~~~~g~a~gi~~~~ 393 (467)
T PRK09556 366 PQLLIGVAAVGFVPKKAIGVANGIKGTF 393 (467)
T ss_pred HHHHHHHHHHhhcchhhHHHHHHHHHHH
Confidence 3333346777999999999999998654
No 94
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.20 E-value=2.5e-10 Score=94.00 Aligned_cols=128 Identities=15% Similarity=0.076 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhhhhhhhh
Q psy3312 31 FLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGALI 110 (189)
Q Consensus 31 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 110 (189)
++..+.........+...|... ++.|.+.++.+.. +.....+ ++.+++|++
T Consensus 18 ~~l~~~~gl~~~~~~~~l~~~l---------------------------~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl 68 (491)
T PRK11010 18 LILGFASGLPLALTSGTLQAWM---------------------------TVENIDLKTIGFF-SLVGQAY-VFKFLWSPL 68 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------------------HhCCCCHHHHHHH-HHHHHHH-HHHHHHHHH
Confidence 3334444555556666777776 6778888888886 3333333 689999999
Q ss_pred hhhh-----CCchh-HHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHH
Q psy3312 111 AERY-----GGKYV-LGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALV 184 (189)
Q Consensus 111 ~dr~-----g~r~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~ 184 (189)
+||+ |||+. +..+.+..+++..+.++.....+++.+.+.+++.|++.+...+...++..|++|+++|+++.++.
T Consensus 69 ~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~ 148 (491)
T PRK11010 69 MDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAIS 148 (491)
T ss_pred HHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHH
Confidence 9999 99885 66777777777666666543223788888999999999988899999999999999999999887
Q ss_pred hhc
Q psy3312 185 FAG 187 (189)
Q Consensus 185 ~~~ 187 (189)
..+
T Consensus 149 ~~g 151 (491)
T PRK11010 149 VLG 151 (491)
T ss_pred HHH
Confidence 654
No 95
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=99.20 E-value=2.1e-10 Score=90.05 Aligned_cols=124 Identities=23% Similarity=0.161 Sum_probs=107.5
Q ss_pred HHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhh
Q psy3312 35 ALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGALIAERY 114 (189)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~ 114 (189)
+..........+++|.++ +.++++..++++++..++.++.+.+++.|++.+|+
T Consensus 23 fl~G~~~~l~diLip~l~---------------------------~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~ 75 (422)
T COG0738 23 FLWGFITCLNDILIPHLK---------------------------EVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL 75 (422)
T ss_pred HHHHHHhhcchhhHHHHH---------------------------HHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh
Confidence 333445556778899998 89999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHh
Q psy3312 115 GGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVF 185 (189)
Q Consensus 115 g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~ 185 (189)
|+|+.++.|+.++++++.++.-+.+..++..++++.++.|.|.+....+.+.++....++++..+.+.+..
T Consensus 76 gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q 146 (422)
T COG0738 76 GYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQ 146 (422)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHH
Confidence 99999999999999999988766655558899999999999999999999999999999866555555443
No 96
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.20 E-value=1.4e-10 Score=91.74 Aligned_cols=105 Identities=14% Similarity=0.051 Sum_probs=79.7
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHH-HHHHHHhhchhhHHHHHHHHHHhhccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLAT-LATPLAARSFGAVGILCARFIVGLGQG 158 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~r~l~G~~~g 158 (189)
++++.+..+.+.+.....++..++.++.|++.||+|||+.+.....+..+.. .+........+.+.+....++.|++.+
T Consensus 248 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 327 (394)
T TIGR00883 248 QTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGG 327 (394)
T ss_pred HhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 5678888889998899999999999999999999999998775544443333 222211111125666677788888888
Q ss_pred cchhHHHHHHHhhcCccchhhHHHHH
Q psy3312 159 PAYPSMNVILAQWVPKTERGRMGALV 184 (189)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~r~~~~~~~ 184 (189)
...+....++.|.+|+++|+++.++.
T Consensus 328 ~~~~~~~~~~~~~~p~~~~~~~~~~~ 353 (394)
T TIGR00883 328 MYTGPMGSFLPELFPTEVRYTGASLA 353 (394)
T ss_pred HHhhhHHHHHHHhCCccceeeEeeeh
Confidence 88899999999999999999887763
No 97
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.19 E-value=6.6e-10 Score=88.91 Aligned_cols=103 Identities=12% Similarity=0.133 Sum_probs=79.6
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP 159 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (189)
+++|++..+.+++.+...+..+++.++.|+++||+|||+.+..+.+...+........++ .+.+++.+++.+++.+.
T Consensus 245 ~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~l~~~~~g~ 321 (393)
T PRK15011 245 NELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHS---PAILLGLQLLNAIYIGI 321 (393)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHH
Confidence 668888888998888777778889999999999999999888776655554444334444 66677788888877777
Q ss_pred chhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312 160 AYPSMNVILAQWVPKTERGRMGALVFA 186 (189)
Q Consensus 160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~ 186 (189)
..+....+..|.+|+ +|+++.++.+.
T Consensus 322 ~~~~~~~~~~~~~p~-~~g~~~~~~~~ 347 (393)
T PRK15011 322 LGGIGMLYFQDLMPG-QAGSATTLYTN 347 (393)
T ss_pred HHHHHHHHHHHhCCC-CcchHHHHHHH
Confidence 667777888999974 68988887654
No 98
>KOG0569|consensus
Probab=99.19 E-value=1.3e-10 Score=94.31 Aligned_cols=98 Identities=31% Similarity=0.446 Sum_probs=87.4
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHH
Q psy3312 89 QGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVIL 168 (189)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~ 168 (189)
-+.+.+++.+|.++|+++.++++||+|||..+.++.++..++.++..++....++..++++|++.|+..|......+.++
T Consensus 62 wS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl 141 (485)
T KOG0569|consen 62 WSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYL 141 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 35567889999999999999999999999999999999999888888777665589999999999999999999999999
Q ss_pred HhhcCccchhhHHHHHhh
Q psy3312 169 AQWVPKTERGRMGALVFA 186 (189)
Q Consensus 169 ~~~~~~~~r~~~~~~~~~ 186 (189)
.|..|.+.||..-.+...
T Consensus 142 ~E~sP~~~RG~~g~~~~~ 159 (485)
T KOG0569|consen 142 TEISPKNLRGALGTLLQI 159 (485)
T ss_pred hhcChhhhccHHHHHHHH
Confidence 999999999987666543
No 99
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.18 E-value=3.6e-10 Score=90.63 Aligned_cols=128 Identities=13% Similarity=-0.000 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhhhhhhhh
Q psy3312 31 FLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGALI 110 (189)
Q Consensus 31 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 110 (189)
+..++.............|.+. ++.|++.++.|++...... .+..+++|++
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l---------------------------~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~ 55 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWM---------------------------TVEGLDIQTIGFFSLVGQA--YIFKFLWAPL 55 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHH---------------------------HHcCCCHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 3445555566666777788877 7889999999999666664 6899999999
Q ss_pred hhhh-----CCch-hHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHH
Q psy3312 111 AERY-----GGKY-VLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALV 184 (189)
Q Consensus 111 ~dr~-----g~r~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~ 184 (189)
+||+ |||| .+..+.+..+++..+..+.+...+++.+.+..++.++..+...+...+++.|++|+++|+++.++.
T Consensus 56 ~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~ 135 (402)
T PRK11902 56 MDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVK 135 (402)
T ss_pred HHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHH
Confidence 9999 8875 688878888777777666643222677777777788888888899999999999999999998887
Q ss_pred hhc
Q psy3312 185 FAG 187 (189)
Q Consensus 185 ~~~ 187 (189)
..+
T Consensus 136 ~~g 138 (402)
T PRK11902 136 VLG 138 (402)
T ss_pred HHH
Confidence 654
No 100
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.18 E-value=1.5e-10 Score=91.14 Aligned_cols=106 Identities=11% Similarity=0.058 Sum_probs=83.6
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhh-----CCchh-HHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHH
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERY-----GGKYV-LGFGLLVSTLATLATPLAARSFGAVGILCARFIV 153 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~ 153 (189)
+++|++.++.++.... .+...+ .+++|++.||+ ||||. ++.+.++.++......+..+..+.+.+....++.
T Consensus 16 ~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~ 93 (356)
T TIGR00901 16 RSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLI 93 (356)
T ss_pred HHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHH
Confidence 8899999999998655 445555 99999999998 89886 4666777766666666664333366777777888
Q ss_pred hhccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 154 GLGQGPAYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 154 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
+++.+...+...+++.|++|+++|+++.++...+
T Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~ 127 (356)
T TIGR00901 94 AFFSATQDIALDAWRLEILSDEELGYGSTIYIVG 127 (356)
T ss_pred HHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHH
Confidence 8888888899999999999999999999886654
No 101
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.17 E-value=6e-10 Score=88.69 Aligned_cols=105 Identities=11% Similarity=0.104 Sum_probs=82.8
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHH-HHHHhhchhhHHHHHHHHHHhhccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLA-TPLAARSFGAVGILCARFIVGLGQG 158 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~l~G~~~g 158 (189)
+++|++..+.+++.+...++.+++.++.|++.||+|||+.+.++.+...+.... .....+ .+.+.+..++.|+..+
T Consensus 267 ~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 343 (405)
T TIGR00891 267 ADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGAN---VAVLGLGLFFQQMLVQ 343 (405)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCc---hHHHHHHHHHHHHHHc
Confidence 568889999999999999999999999999999999999988887765333322 222222 5555666677777767
Q ss_pred cchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 159 PAYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
...+....++.|.+|+++|+++.|+.+..
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 372 (405)
T TIGR00891 344 GIWGILPKHLGEYFPTDQRAAGLGFTYQL 372 (405)
T ss_pred cchhhHHHHHhhhCCcchhHHHhhHHHHH
Confidence 77788888999999999999999987653
No 102
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.15 E-value=6.1e-10 Score=87.27 Aligned_cols=106 Identities=22% Similarity=0.261 Sum_probs=91.3
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP 159 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (189)
+.+|.+..+.+++.....++..++.++.+++.||++||+.+..+.++.++...+..+.++ . .+.+.+..++.|++.+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~g~~~~~ 317 (365)
T TIGR00900 240 KYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPP-N-FPLFLVLWFAIGVGYGP 317 (365)
T ss_pred HHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhch-h-HHHHHHHHHHHHHHHHH
Confidence 347888889999999999999999999999999999999998887777777766666553 1 66778888999999999
Q ss_pred chhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 160 AYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
..+....++.|.+|+++|++..++.+..
T Consensus 318 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 345 (365)
T TIGR00900 318 INVPQGTLLQRRVPAELLGRVFGAQFSL 345 (365)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 8999999999999999999999988654
No 103
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.15 E-value=1e-09 Score=86.75 Aligned_cols=104 Identities=11% Similarity=0.100 Sum_probs=82.1
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP 159 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (189)
+++|.++.+.+++.........++.++.|++.||+|||+++..+.+...+........++ .+.+.+.+++.|++.+.
T Consensus 228 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~g~ 304 (375)
T TIGR00899 228 HELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNS---LWALLMLQLLNAIFIGI 304 (375)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 567888888888887777777888999999999999999988877766555544444444 66777788899998888
Q ss_pred chhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 160 AYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
..+....++.|..|+ +|+++.++++..
T Consensus 305 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 331 (375)
T TIGR00899 305 LAGIGMLYFQDLMPG-RAGAATTLYTNT 331 (375)
T ss_pred HHHHHHHHHHHhCcc-hhhHHHHHHHHH
Confidence 888888899999875 567888887643
No 104
>PRK12382 putative transporter; Provisional
Probab=99.14 E-value=2.1e-09 Score=85.84 Aligned_cols=96 Identities=28% Similarity=0.321 Sum_probs=81.5
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHH
Q psy3312 89 QGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVIL 168 (189)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~ 168 (189)
.++....+.++.++++++.|++.||+|+|+.+..+..+..++.++..+.++ .+.+++..++.|++.+...+.....+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~~~~~~~~~~~~~~ 327 (392)
T PRK12382 251 AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPT---AWVALAGAALTGAGCSLIFPALGVEV 327 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHccc---HHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 455666777888899999999999999999999988888887777666655 66777888999999988888888899
Q ss_pred HhhcCccchhhHHHHHhhc
Q psy3312 169 AQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 169 ~~~~~~~~r~~~~~~~~~~ 187 (189)
.|.+|+++|++..|+++..
T Consensus 328 ~~~~~~~~~g~~~g~~~~~ 346 (392)
T PRK12382 328 VKRVPSQVRGTALGGYAAF 346 (392)
T ss_pred HHhcCHHHHHHHHHHHHHH
Confidence 9999999999999998754
No 105
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.13 E-value=3.2e-09 Score=84.92 Aligned_cols=97 Identities=25% Similarity=0.229 Sum_probs=81.8
Q ss_pred chhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHH
Q psy3312 88 TQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVI 167 (189)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~ 167 (189)
+.++..+.+.++.+++.++.|++.||+|+|+.+..+.++..++..+....++ .+.+++.+++.|++.+..++.....
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~G~~~~~~~~~~~~~ 326 (399)
T PRK05122 250 GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPS---PWMALIGAALTGFGFSLVFPALGVE 326 (399)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4466667788888999999999999999999999888888877777766655 6677788899999998888888888
Q ss_pred HHhhcCccchhhHHHHHhhc
Q psy3312 168 LAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 168 ~~~~~~~~~r~~~~~~~~~~ 187 (189)
+.|.+|+++|+++.++++..
T Consensus 327 ~~~~~~~~~~g~~~g~~~~~ 346 (399)
T PRK05122 327 AVKRVPPQNRGAALGAYSVF 346 (399)
T ss_pred HHHhCCHHHHHHHHHHHHHH
Confidence 89999999999999987653
No 106
>PRK09952 shikimate transporter; Provisional
Probab=99.11 E-value=2.1e-09 Score=87.31 Aligned_cols=106 Identities=12% Similarity=-0.014 Sum_probs=75.0
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHh-hchhhHHHHHHHHHHhhccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAA-RSFGAVGILCARFIVGLGQG 158 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~r~l~G~~~g 158 (189)
+++|.+......+.....+...++.++.|+++||+|||+++..+.++..+......... .....+.+++..++.+++.+
T Consensus 279 ~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 358 (438)
T PRK09952 279 QNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHD 358 (438)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 56777766555555556667788889999999999999998888776655443332221 11113344455566678877
Q ss_pred cchhHHHHHHHhhcCccchhhHHHHHh
Q psy3312 159 PAYPSMNVILAQWVPKTERGRMGALVF 185 (189)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~r~~~~~~~~ 185 (189)
...+....+++|.+|++.|+++.++.+
T Consensus 359 ~~~~~~~~~~~e~~p~~~r~tg~g~~~ 385 (438)
T PRK09952 359 MVVCVQQPMFTEMFGASYRYSGAGVGY 385 (438)
T ss_pred HHHHHHHHHHHHHCCcchhHHHHhHHH
Confidence 778888999999999999988887753
No 107
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.11 E-value=2.3e-09 Score=86.91 Aligned_cols=107 Identities=10% Similarity=0.002 Sum_probs=70.1
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHH-HhhchhhHHHHHHHHHHhhccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPL-AARSFGAVGILCARFIVGLGQG 158 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~r~l~G~~~g 158 (189)
+++|.+..+.++..+...++..++.++.|+++||+|||+.+..+.++..+....... .....+....+..-.+.++..+
T Consensus 272 ~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (432)
T PRK10406 272 NTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVS 351 (432)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 567888888888888888888889999999999999999887766544333322211 1111112222222222223333
Q ss_pred cchhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312 159 PAYPSMNVILAQWVPKTERGRMGALVFA 186 (189)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 186 (189)
...+....+.+|++|++.|+++.|+.+.
T Consensus 352 ~~~~~~~~~~~e~fp~~~r~t~~g~~~~ 379 (432)
T PRK10406 352 FYTSISGILKAEMFPAQVRALGVGLSYA 379 (432)
T ss_pred HHHHHHHHHHHHHCCCCccchhhhHHHH
Confidence 3345567788999999999999999764
No 108
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.11 E-value=8.4e-10 Score=90.65 Aligned_cols=107 Identities=11% Similarity=0.093 Sum_probs=80.3
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP 159 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (189)
+++|++..+.+++.+...++.+++.++.|+++||+|||+++..+.++..+..++........ .+.+.+..++.+....+
T Consensus 304 ~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 382 (496)
T PRK03893 304 TDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGAN-VWVLGLLLFFQQMLGQG 382 (496)
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccH-HHHHHHHHHHHHHHhcc
Confidence 57889999999999999999999999999999999999998888776665554433332221 33444444544443334
Q ss_pred chhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 160 AYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
..+..+.++.|.+|+++|++.+++.+..
T Consensus 383 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 410 (496)
T PRK03893 383 ISGLLPKLIGGYFDTEQRAAGLGFTYNV 410 (496)
T ss_pred cchhhHHHHHhhCCHHHhhcccchhhhh
Confidence 4567778999999999999999887654
No 109
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.10 E-value=1.1e-09 Score=89.45 Aligned_cols=107 Identities=14% Similarity=0.192 Sum_probs=88.8
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHH--hhchhhHHHHHHHHHHhhcc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLA--ARSFGAVGILCARFIVGLGQ 157 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~r~l~G~~~ 157 (189)
+.+|.++.+.++......++..++.++.|++.||+|||+++..+.++.+++..+..+. ++.. .+.+....++.|++.
T Consensus 284 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~g~g~ 362 (485)
T TIGR00711 284 QVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTP-FLAIALPQFIRGFGM 362 (485)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCC-HHHHHHHHHHHHHHH
Confidence 5678899999999999999999999999999999999999999988888877766522 2222 566667788899999
Q ss_pred ccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 158 GPAYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 158 g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
+..++.......+..|+++|+++.++.+..
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 392 (485)
T TIGR00711 363 GCFFMPLTTIALSGLPPHKIARGSSLSNFT 392 (485)
T ss_pred HHHHHHHHHHHHhcCCHHHHhHHHHHHHHH
Confidence 888877788888889999999999987653
No 110
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.10 E-value=2.1e-09 Score=84.84 Aligned_cols=107 Identities=16% Similarity=0.012 Sum_probs=70.7
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchh-HHHHHHHHHHH---HHHHHHHhh-chhhHHHHHHHHHHh
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYV-LGFGLLVSTLA---TLATPLAAR-SFGAVGILCARFIVG 154 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-l~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~r~l~G 154 (189)
++++.+..+.+++.+...++..++.++.|++.||++||+. +........+. ..+...... ....+..+....+.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (399)
T TIGR00893 244 QERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGF 323 (399)
T ss_pred HHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 5678888889999999999999999999999999999961 11111111111 111111111 111334344444444
Q ss_pred hccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 155 LGQGPAYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 155 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
.+.+ ..+....+++|.+|+++|++..++.+..
T Consensus 324 ~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 355 (399)
T TIGR00893 324 FGLG-AGAIGWALISDNAPGNIAGLTGGLINSL 355 (399)
T ss_pred hchh-hhhHHHHHHHhhcChhHHHHHHHHHHHH
Confidence 4444 7888999999999999999999988654
No 111
>PRK03699 putative transporter; Provisional
Probab=99.09 E-value=4.1e-09 Score=84.37 Aligned_cols=103 Identities=12% Similarity=0.139 Sum_probs=80.5
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP 159 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (189)
+++|++..+.+++.+.+.++..++.++.|++.||++||+.+.....+..+...+....++ .+.+.+..++.|++.+.
T Consensus 234 ~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~G~~~~~ 310 (394)
T PRK03699 234 KKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDD---PSHLLYAILGLGFFSSA 310 (394)
T ss_pred HHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCC---chHHHHHHHHHHHHHHH
Confidence 668999999999999999999999999999999999999988877776666555555444 55556677888888887
Q ss_pred chhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312 160 AYPSMNVILAQWVPKTERGRMGALVFA 186 (189)
Q Consensus 160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~ 186 (189)
.++....+..+..| +++++..+....
T Consensus 311 ~~~~~~~~~~~~~~-~~~~~~~g~~~~ 336 (394)
T PRK03699 311 IYTTIITLGSQQTK-VASPKLVNFILT 336 (394)
T ss_pred HHHHHHHHHHHHcc-CCCHHHHHHHHH
Confidence 88887878888775 445666665543
No 112
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.09 E-value=4.1e-09 Score=84.35 Aligned_cols=95 Identities=17% Similarity=0.164 Sum_probs=67.7
Q ss_pred eeeeccccchhHHHHHHHH-HHHHhhhhhhhhhhhhCCchhH-HHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcc
Q psy3312 80 YEFDWDERTQGLILSSFFW-GYVLNHIPGALIAERYGGKYVL-GFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQ 157 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~g~r~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~ 157 (189)
+++|+++++.+++.+...+ +..++.++.++ .||+||||.+ ..+.+..++...+.+++++ ++.+++.+.+.|...
T Consensus 44 ~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~ 119 (393)
T PRK15011 44 DEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRN---YFVLLFVGVFLSSFG 119 (393)
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHH
Confidence 7899999999999776554 66666666666 9999999875 4555665666666777766 666655554444444
Q ss_pred ccchhHHHHHHHhhcCccchh
Q psy3312 158 GPAYPSMNVILAQWVPKTERG 178 (189)
Q Consensus 158 g~~~~~~~~~~~~~~~~~~r~ 178 (189)
+...+....+..++.++++|.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~ 140 (393)
T PRK15011 120 STANPQMFALAREHADKTGRE 140 (393)
T ss_pred HhhHHHHHHHHHHHhhhccch
Confidence 566788888888888776553
No 113
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.09 E-value=5e-09 Score=82.57 Aligned_cols=103 Identities=14% Similarity=0.149 Sum_probs=77.8
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhh-CCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERY-GGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQG 158 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g 158 (189)
++.|.+..+.+.+.+...++.+++.++.|++.||+ +||+.+.++.++.+++..+..+.++. ... ...++.|++.+
T Consensus 225 ~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~l~g~~~g 300 (355)
T TIGR00896 225 ISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMH---GLW-AWALVLGLGQG 300 (355)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhh---HHH-HHHHHHHHhhh
Confidence 45788888999999999999999999999999999 56667777777777776666655442 122 23467899999
Q ss_pred cchhHHHHHHHhhcC-ccchhhHHHHHhh
Q psy3312 159 PAYPSMNVILAQWVP-KTERGRMGALVFA 186 (189)
Q Consensus 159 ~~~~~~~~~~~~~~~-~~~r~~~~~~~~~ 186 (189)
..++.....+.+..+ +++++...++.+.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 329 (355)
T TIGR00896 301 GAFPLALTLIGLRSRQAAQAAALSAMAQS 329 (355)
T ss_pred hHhHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 888887777766554 4667887777553
No 114
>PRK15075 citrate-proton symporter; Provisional
Probab=99.08 E-value=3.3e-09 Score=86.01 Aligned_cols=106 Identities=15% Similarity=0.091 Sum_probs=74.4
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHH-HHHHHhhchhhHHHHHHHHHHhhccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATL-ATPLAARSFGAVGILCARFIVGLGQG 158 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~r~l~G~~~g 158 (189)
+.+|++..+.++......++..++.++.|+++||+|||+++..+.++..+... .........+.....+..++.|++.+
T Consensus 267 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 346 (434)
T PRK15075 267 TVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYG 346 (434)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence 45788888888888888899999999999999999999988776544333221 11111111113334444555566666
Q ss_pred cchhHHHHHHHhhcCccchhhHHHHHh
Q psy3312 159 PAYPSMNVILAQWVPKTERGRMGALVF 185 (189)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~r~~~~~~~~ 185 (189)
...+....++.|.+|++.|+++.++.+
T Consensus 347 ~~~~~~~~~~~e~~p~~~rg~~~g~~~ 373 (434)
T PRK15075 347 SYNGAMVVALTEVMPAEVRTAGFSLAY 373 (434)
T ss_pred HHHhhHHHHHHHHCCCCccchheeHHH
Confidence 666667788999999999999988753
No 115
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.08 E-value=1.9e-09 Score=85.89 Aligned_cols=102 Identities=13% Similarity=0.001 Sum_probs=87.5
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP 159 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (189)
++.|.+..+.+.+.+...++..+..++.|++.||+|+|+.+..+.+..++..++....++ .+.+++..++.|++.+.
T Consensus 233 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~~~~~ 309 (382)
T PRK11128 233 QAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTA---LPWLIVIQILHCGTFTV 309 (382)
T ss_pred HHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHH
Confidence 457888888999999888899999999999999999999999999888887777777666 77888899999999988
Q ss_pred chhHHHHHHHhhcCccchhhHHHHHh
Q psy3312 160 AYPSMNVILAQWVPKTERGRMGALVF 185 (189)
Q Consensus 160 ~~~~~~~~~~~~~~~~~r~~~~~~~~ 185 (189)
..+....++.+. +++++++..++.+
T Consensus 310 ~~~~~~~~~~~~-~~~~~~~~~~~~~ 334 (382)
T PRK11128 310 CHLAAMRYIAAR-PGSEVIRLQALYS 334 (382)
T ss_pred HHHHHHHHHHHC-CHhhhHHHHHHHH
Confidence 888888888887 5677788888765
No 116
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.08 E-value=3.6e-09 Score=85.24 Aligned_cols=107 Identities=20% Similarity=0.149 Sum_probs=75.3
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP 159 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (189)
++.|.++.+.+.+.+...++..++.++.|++.||+|||+.+..+.++..+...+....+... ...+.+..+..+++..+
T Consensus 259 ~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 337 (426)
T PRK12307 259 AGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDN-YLLLGACLFGLMATNVG 337 (426)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcccc-HHHHHHHHHHHHHhccc
Confidence 44677888888888889999999999999999999999999888877666554444333211 22222222222333333
Q ss_pred chhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 160 AYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
..+..+.++.|.+|++.|++++|+.+..
T Consensus 338 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~ 365 (426)
T PRK12307 338 VGGLVPKFLYDYFPLEVRGLGTGLIYNL 365 (426)
T ss_pred HhHHHHHHHHHhCcHHHHhhhhhHHHHH
Confidence 4456677889999999999999987643
No 117
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.07 E-value=1.7e-09 Score=89.45 Aligned_cols=108 Identities=19% Similarity=0.246 Sum_probs=89.4
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHh--hchhhHHHHHHHHHHhhcc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAA--RSFGAVGILCARFIVGLGQ 157 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~r~l~G~~~ 157 (189)
.+..-++...+++.....+...+..+++|.++||++||++++.+-++.++..++.++.. +.-+.|.+++.-++.|++.
T Consensus 38 ~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~ 117 (524)
T PF05977_consen 38 TQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGS 117 (524)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHH
Confidence 34455778899999999999999999999999999999999999887766655444332 2223788889999999999
Q ss_pred ccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 158 GPAYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 158 g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
+...|+..+++.|..|+++...+.++....
T Consensus 118 a~~~PA~~A~ip~lV~~~~L~~A~al~s~~ 147 (524)
T PF05977_consen 118 AFFNPAWQAIIPELVPKEDLPAANALNSIS 147 (524)
T ss_pred HHHHHHHHHHHHHhccHhhHHHHHHHHHHH
Confidence 999999999999999999999888876543
No 118
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.07 E-value=1.7e-09 Score=84.47 Aligned_cols=108 Identities=22% Similarity=0.338 Sum_probs=89.6
Q ss_pred eeeecc-ccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccc
Q psy3312 80 YEFDWD-ERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQG 158 (189)
Q Consensus 80 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g 158 (189)
+++|++ ..+.+++.+...+...++.++.|++.||+++|+.+........+..+...+.....+....++..++.|++.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 314 (352)
T PF07690_consen 235 EVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFG 314 (352)
T ss_dssp HHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHH
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 778888 7888988999999999999999999999999888777777777666655554442225566677888999999
Q ss_pred cchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 159 PAYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
...+....++.+.+|+++|+++.|+.+..
T Consensus 315 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 343 (352)
T PF07690_consen 315 IVFPILFSLIQELVPPEYRGTAFGLFNSI 343 (352)
T ss_dssp HHCHHHHHHHHCCCHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 89999999999999999999999998753
No 119
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.07 E-value=2.8e-09 Score=86.16 Aligned_cols=101 Identities=16% Similarity=0.105 Sum_probs=84.5
Q ss_pred cccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhh-chhhHHHHHHHHHHhhccccchhH
Q psy3312 85 DERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAAR-SFGAVGILCARFIVGLGQGPAYPS 163 (189)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~l~G~~~g~~~~~ 163 (189)
..++.+...+...+..+++.++.|++.||+|+|+++..+.++..+...+...... ....+.+++.+++.|++.+...+.
T Consensus 249 ~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~ 328 (418)
T TIGR00889 249 VVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNIS 328 (418)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3466788889999999999999999999999999999999988887766655321 111456677899999999888888
Q ss_pred HHHHHHhhcCccchhhHHHHHh
Q psy3312 164 MNVILAQWVPKTERGRMGALVF 185 (189)
Q Consensus 164 ~~~~~~~~~~~~~r~~~~~~~~ 185 (189)
...+++|++|+++|+++.|+.+
T Consensus 329 ~~~~i~~~~p~~~~g~~~g~~~ 350 (418)
T TIGR00889 329 GSVFVEKEVPVHIRASAQGLFT 350 (418)
T ss_pred HHHHHHHHCCHHHHHHHHHHHH
Confidence 8999999999999999999986
No 120
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.07 E-value=2.2e-09 Score=88.50 Aligned_cols=107 Identities=12% Similarity=0.130 Sum_probs=89.5
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP 159 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (189)
..+|.++.+.++......++..++.++.|++.||+|+|+.+..+.++.+++..+........+.+......++.|++.|.
T Consensus 288 ~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~ 367 (495)
T PRK14995 288 FVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAAS 367 (495)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHH
Confidence 56789999999999999999999999999999999999999988888877776555433222255566778899999998
Q ss_pred chhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312 160 AYPSMNVILAQWVPKTERGRMGALVFA 186 (189)
Q Consensus 160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~ 186 (189)
..+.....+.+..|+++++.+.++.+.
T Consensus 368 ~~~~~~~~~~~~~~~~~~g~~~~~~~~ 394 (495)
T PRK14995 368 ALLASTSAIMAAAPPEKAAAAGAIETM 394 (495)
T ss_pred HHHHHHHHHHhcCCHHhcchHHHHHHH
Confidence 888888889999999999999988764
No 121
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.06 E-value=5.4e-09 Score=83.74 Aligned_cols=104 Identities=14% Similarity=0.150 Sum_probs=79.1
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP 159 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (189)
.++|.+..+.+...+.+.++.+++.++.|++.||+|||+.+..+..+..++..+....+.. .... ..++.|++.+.
T Consensus 233 ~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~--~~~l~g~g~g~ 308 (393)
T PRK09705 233 IEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQ--LPVL--WAMVCGLGLGG 308 (393)
T ss_pred HHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccch--HHHH--HHHHHHHhccc
Confidence 4578898999999999999999999999999999999999888877777766554433321 1122 23456888888
Q ss_pred chhHHHHHHHhhcC-ccchhhHHHHHhhc
Q psy3312 160 AYPSMNVILAQWVP-KTERGRMGALVFAG 187 (189)
Q Consensus 160 ~~~~~~~~~~~~~~-~~~r~~~~~~~~~~ 187 (189)
.++.......+..+ +++|++..++.+..
T Consensus 309 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 337 (393)
T PRK09705 309 AFPLCLLLALDHSVQPAIAGKLVAFMQGI 337 (393)
T ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 88877777777775 57889998876543
No 122
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.03 E-value=4.3e-09 Score=84.79 Aligned_cols=105 Identities=16% Similarity=0.093 Sum_probs=88.1
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP 159 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (189)
+.+|.+..+.+++.+...++..++.++.+++.||.++++.+..+.++.+++.++..+.++ .+...++.++.|++.+.
T Consensus 252 ~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~ 328 (417)
T PRK10489 252 EVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPM---WILAVLCLALFGYLSAI 328 (417)
T ss_pred hccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccch---HHHHHHHHHHHHHHHHH
Confidence 448888889999999999999999999999999988888888888777777766666655 56667788888988877
Q ss_pred chhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 160 AYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
..+...+++.|.+|++.|++..|+++..
T Consensus 329 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~ 356 (417)
T PRK10489 329 SSLLQYTLLQTQTPDEMLGRINGLWTAQ 356 (417)
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 7777788999999999999999987653
No 123
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.03 E-value=3.8e-09 Score=83.23 Aligned_cols=108 Identities=19% Similarity=0.087 Sum_probs=77.7
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhch-hhHHHHHHHHHHhhccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSF-GAVGILCARFIVGLGQG 158 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~G~~~g 158 (189)
+.+|+++.+.+++.+...+..+++.++.|++.||+|+|+.+..+......+..+..+..... +.+...+...+.+++.|
T Consensus 254 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 333 (366)
T TIGR00886 254 DQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSG 333 (366)
T ss_pred HHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhc
Confidence 56788888999888899999999999999999999999888777766666555544332210 14444444444455555
Q ss_pred cchhHHHHHHHhhcCccchhhHHHHHhhcC
Q psy3312 159 PAYPSMNVILAQWVPKTERGRMGALVFAGS 188 (189)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 188 (189)
...+....++++.+| ++||+..|+.+...
T Consensus 334 ~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~ 362 (366)
T TIGR00886 334 AGNGSTFALVPHIFR-RATGAVSGLVGAIG 362 (366)
T ss_pred cccchhhhcchhhch-hhcccHHHHHHHhc
Confidence 555566677788886 69999999877643
No 124
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.02 E-value=3.2e-09 Score=84.63 Aligned_cols=123 Identities=13% Similarity=-0.003 Sum_probs=88.2
Q ss_pred HHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhhhhhhhhh
Q psy3312 32 LAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGALIA 111 (189)
Q Consensus 32 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 111 (189)
+.++..+.......+..|.+. +++|++..+.+++.+.+.+...++++++|+++
T Consensus 11 ~~~~~~~~~~~~~~p~l~~~l---------------------------~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~ 63 (382)
T TIGR00902 11 LGFFGYFCAYGIFLPFFPAWL---------------------------KGIGLGEEMIGLLIGAALIARFAGGLFFAPLI 63 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------------------------HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444454555666677777 78999999999999999999999999999999
Q ss_pred hhhCCchhHHHHHH-HHHHHHH-HHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312 112 ERYGGKYVLGFGLL-VSTLATL-ATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFA 186 (189)
Q Consensus 112 dr~g~r~~l~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 186 (189)
||+||++....... ...+..+ ....+++ ++.+++.|.++|.+.+...+...++..++ +++|++..|....
T Consensus 64 d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~ 135 (382)
T TIGR00902 64 KDANHIIIALRLLALASAIFAAAFSAGAHN---AWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRL 135 (382)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHH
Confidence 99998543322211 1111112 2234455 88899999999999888888888887665 4677777766543
No 125
>PRK10504 putative transporter; Provisional
Probab=99.02 E-value=4.1e-09 Score=86.15 Aligned_cols=108 Identities=18% Similarity=0.124 Sum_probs=86.4
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP 159 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (189)
..+|.++.+.+++.....++..++.++.|++.||+|+|+++..+.++.++...+..+.......+.+.+..++.|++.+.
T Consensus 290 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 369 (471)
T PRK10504 290 IGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNST 369 (471)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHH
Confidence 35788888899988888888888999999999999999999988887877766655543222134445566778888888
Q ss_pred chhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 160 AYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
.++....+..+.+|+++|+.+.++.+..
T Consensus 370 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 397 (471)
T PRK10504 370 RFSSMNTLTLKDLPDNLASSGNSLLSMI 397 (471)
T ss_pred HHHHHHHHHHHcCCHHhccchHHHHHHH
Confidence 8888999999999999999999887653
No 126
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.02 E-value=7e-09 Score=83.00 Aligned_cols=93 Identities=13% Similarity=0.035 Sum_probs=70.7
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHH---HHhh--chhhHHHHHHHHHHh
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATP---LAAR--SFGAVGILCARFIVG 154 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~r~l~G 154 (189)
+++|+++.+.+++.+.+.++..+++++.|+++||+|||+.+..+++..++...... +.+. ....+..++.+++.|
T Consensus 31 ~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 110 (396)
T TIGR00882 31 DVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLG 110 (396)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999887666654443221 1111 011334567788899
Q ss_pred hccccchhHHHHHHHhhc
Q psy3312 155 LGQGPAYPSMNVILAQWV 172 (189)
Q Consensus 155 ~~~g~~~~~~~~~~~~~~ 172 (189)
++.+...+....+..+..
T Consensus 111 ~~~~~~~~~~~~~~~~~~ 128 (396)
T TIGR00882 111 FVFSAGAGAIEAYIEKVS 128 (396)
T ss_pred HHhccchhhHHHHHHHhh
Confidence 988888888877777754
No 127
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.01 E-value=1.4e-08 Score=83.27 Aligned_cols=104 Identities=11% Similarity=0.087 Sum_probs=90.7
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCc--hhHHHHHHHHHHHHHHHHH--------HhhchhhHHHHHH
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGK--YVLGFGLLVSTLATLATPL--------AARSFGAVGILCA 149 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r--~~l~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~ 149 (189)
+++|++..+...+..+..+..+++++++|++.||+|.| +++..+++++.+..+...+ ..+ .+.+.+.
T Consensus 310 ~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~---~~~f~~~ 386 (477)
T PF11700_consen 310 EVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKS---PWEFWVL 386 (477)
T ss_pred HhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCccc---HHHHHHH
Confidence 78999999999999999999999999999999999999 8888888877555544333 233 6778888
Q ss_pred HHHHhhccccchhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312 150 RFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFA 186 (189)
Q Consensus 150 r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 186 (189)
-++.|+..|..++...++.+++.|+++.+..+|++..
T Consensus 387 a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i 423 (477)
T PF11700_consen 387 AVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAI 423 (477)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 8999999999999999999999999999999999865
No 128
>PRK03545 putative arabinose transporter; Provisional
Probab=99.00 E-value=7e-09 Score=82.82 Aligned_cols=103 Identities=16% Similarity=0.040 Sum_probs=76.6
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP 159 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (189)
+++|.+..+.+++.+...++.+++.++.|++.||++||+++....+.......+....++ .+.+.+..++.|++.+.
T Consensus 234 ~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~l~g~~~~~ 310 (390)
T PRK03545 234 QVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLIAIALLLVCLLLLLPAANS---EWHLSVLSIFWGIAIMC 310 (390)
T ss_pred HhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhch---HHHHHHHHHHHHHHHhc
Confidence 567888888999999999999999999999999999887554433333322222233333 66777788888998877
Q ss_pred chhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312 160 AYPSMNVILAQWVPKTERGRMGALVFA 186 (189)
Q Consensus 160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~ 186 (189)
..+.....+.+..| ++|++++|+++.
T Consensus 311 ~~~~~~~~~~~~~~-~~~~~~~g~~~~ 336 (390)
T PRK03545 311 IGLAMQVKVLKLAP-DATDVAMALFSG 336 (390)
T ss_pred chHHHHHHHHHhCC-CcHHHHHHHHHH
Confidence 77777778888875 688998887654
No 129
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.00 E-value=1.3e-08 Score=81.06 Aligned_cols=99 Identities=20% Similarity=0.260 Sum_probs=77.4
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP 159 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (189)
++.|.+..+.+++.+...++.++++++.|++.||+|+|+++..+.....++..... .. .......++.|++...
T Consensus 228 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~~----~~~~~~~~l~g~~~~~ 301 (381)
T PRK03633 228 NHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--SQ----AAMAPALFILGAAGFT 301 (381)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--hh----HHHHHHHHHHHHHHHh
Confidence 45688888889988999999999999999999999999999888777776655432 21 2234456777877777
Q ss_pred chhHHHHHHHhhcCccchhhHHHHH
Q psy3312 160 AYPSMNVILAQWVPKTERGRMGALV 184 (189)
Q Consensus 160 ~~~~~~~~~~~~~~~~~r~~~~~~~ 184 (189)
..|.....+.|..|+++++...+..
T Consensus 302 ~~p~~~~~~~~~~~~~~~~~~~~~~ 326 (381)
T PRK03633 302 LYPVAMAWACEKVEHHELVAMNQAL 326 (381)
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHH
Confidence 7899999999999888877666554
No 130
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.00 E-value=6.3e-09 Score=85.05 Aligned_cols=105 Identities=12% Similarity=0.062 Sum_probs=78.1
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhh----hhCCchhHHHH-HHHHHHHHHHHHHHhhch-------------
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAE----RYGGKYVLGFG-LLVSTLATLATPLAARSF------------- 141 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~g~r~~l~~~-~~~~~~~~~~~~~~~~~~------------- 141 (189)
+++|.++...+++..+..+...+.+++.|+++| |+||||.++.+ .+...++..+++++.+..
T Consensus 32 ~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~ 111 (477)
T TIGR01301 32 QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKP 111 (477)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchh
Confidence 678999999999999999999999999999999 59999987764 556656656666654410
Q ss_pred -hhHHHHHHHHHHhhccccchhHHHHHHHhhcCccch--hhHHHHH
Q psy3312 142 -GAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTER--GRMGALV 184 (189)
Q Consensus 142 -~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r--~~~~~~~ 184 (189)
..+..+++..+..++.....+...++++|.+|+++| +.+.++.
T Consensus 112 ~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~ 157 (477)
T TIGR01301 112 RAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYF 157 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHH
Confidence 012334444445557777788889999999998865 4566654
No 131
>PRK09528 lacY galactoside permease; Reviewed
Probab=98.99 E-value=2.9e-09 Score=85.85 Aligned_cols=99 Identities=10% Similarity=0.028 Sum_probs=84.2
Q ss_pred eeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccch
Q psy3312 82 FDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAY 161 (189)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~ 161 (189)
.+.+..+.+++.++..++.+++.++.|++.||+|+|+.+..+.++..+...+.++.++ .+.+++.+++.|++.+...
T Consensus 257 ~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~---~~~~~~~~~l~g~~~~~~~ 333 (420)
T PRK09528 257 PEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATG---PLEVSILKLLHAFEVPFLL 333 (420)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHH
Confidence 3555667889999999999999999999999999999999998888888887777766 7778888999999888777
Q ss_pred hHHHHHHHhhcCccchhhHHHH
Q psy3312 162 PSMNVILAQWVPKTERGRMGAL 183 (189)
Q Consensus 162 ~~~~~~~~~~~~~~~r~~~~~~ 183 (189)
+....++.+.+|++.|++..++
T Consensus 334 ~~~~~~~~~~~~~~~~a~~~~~ 355 (420)
T PRK09528 334 VGVFKYITLNFDVRLSATIYLV 355 (420)
T ss_pred HHHHHHHHHHcCccceeeeeee
Confidence 7788899999999988876543
No 132
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=98.97 E-value=5.5e-09 Score=82.53 Aligned_cols=132 Identities=20% Similarity=0.117 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhhhhh
Q psy3312 28 LLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPG 107 (189)
Q Consensus 28 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (189)
....+.++..+.....++..+|.+. +++|+.++.+++.....+.+...+..+..
T Consensus 221 W~lsllY~~tFG~Fvgfs~~l~~~~--------------------------~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~G 274 (417)
T COG2223 221 WLLSLLYFATFGGFVGFSAYLPMYL--------------------------VTQFGLSPVTAGLIAFLFPLIGALARPLG 274 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HHhcCCChhhHHHHHHHHHHHHHHHHhcc
Confidence 3366777888888888888888766 38899999999999999999999999999
Q ss_pred hhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhc----hhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHH
Q psy3312 108 ALIAERYGGKYVLGFGLLVSTLATLATPLAARS----FGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGAL 183 (189)
Q Consensus 108 g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~ 183 (189)
|+++||+|.+|++.......+++..+..+..+. .+.+......+..++..|........++...+| ++-|...|+
T Consensus 275 G~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~-~~~G~v~G~ 353 (417)
T COG2223 275 GWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFP-KETGAVTGI 353 (417)
T ss_pred chhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHH-hhhhHHHHH
Confidence 999999999999999988888888777766411 113333333344444444444555666777774 467777776
Q ss_pred Hhh
Q psy3312 184 VFA 186 (189)
Q Consensus 184 ~~~ 186 (189)
...
T Consensus 354 vga 356 (417)
T COG2223 354 VGA 356 (417)
T ss_pred HHH
Confidence 543
No 133
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=98.97 E-value=8.5e-09 Score=83.34 Aligned_cols=85 Identities=16% Similarity=0.164 Sum_probs=72.5
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCC-chhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGG-KYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQG 158 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~-r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g 158 (189)
+++|++..+.|++.+++.++..+++++.|.++||+|| |+++.++.++..+...+..+.++ ++.+.+.|++.|++.+
T Consensus 31 ~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~ 107 (418)
T TIGR00889 31 KTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTT---PAGMFPVLLANSLAYM 107 (418)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHc
Confidence 7789999999999999999999999999999999965 77888888888777777777766 7788899999999877
Q ss_pred cchhHHHHH
Q psy3312 159 PAYPSMNVI 167 (189)
Q Consensus 159 ~~~~~~~~~ 167 (189)
...+...++
T Consensus 108 ~~~~~~~~l 116 (418)
T TIGR00889 108 PTIALTNSI 116 (418)
T ss_pred cHHHHHHHH
Confidence 776665554
No 134
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=98.96 E-value=6.7e-09 Score=84.06 Aligned_cols=108 Identities=13% Similarity=0.042 Sum_probs=76.0
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHH---hhch-----hhHHHHHHHH
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLA---ARSF-----GAVGILCARF 151 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~---~~~~-----~~~~~~~~r~ 151 (189)
+++|++..+.++......++.+++.++.|+++||+|||+.+..++++.+++.++..+. .... ....+....+
T Consensus 312 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (481)
T TIGR00879 312 ENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILL 391 (481)
T ss_pred HHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHH
Confidence 6678888778888888999999999999999999999999998888777776665521 1110 0222222222
Q ss_pred HHhhccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 152 IVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 152 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
+.+....+..+....++.|.+|+++|+++.++.+..
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 427 (481)
T TIGR00879 392 FIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAA 427 (481)
T ss_pred HHHHHHccccCeehhhhhccCChHHHHHHHHHHHHH
Confidence 222222223455667789999999999999987654
No 135
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=98.95 E-value=8.1e-09 Score=82.32 Aligned_cols=98 Identities=17% Similarity=0.043 Sum_probs=71.6
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCc----hhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhh
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGK----YVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGL 155 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~ 155 (189)
+++|.+..+.+++.+.+.++..+++++.|++.||+||+ +.+.+..... ........++ +|.+++.|++.|+
T Consensus 32 ~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~l~i~~~l~g~ 106 (382)
T PRK11128 32 KGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHS---FWLLFVAIGLFNL 106 (382)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhccc---HHHHHHHHHHHHH
Confidence 77899999999999999999999999999999999994 3332222211 1111222234 8888899999999
Q ss_pred ccccchhHHHHHHHhhcCccchhhHHHHH
Q psy3312 156 GQGPAYPSMNVILAQWVPKTERGRMGALV 184 (189)
Q Consensus 156 ~~g~~~~~~~~~~~~~~~~~~r~~~~~~~ 184 (189)
+.+...+...++..++. ++|++..+..
T Consensus 107 ~~~~~~~~~~a~~~~~~--~~~~~a~~~~ 133 (382)
T PRK11128 107 FFSPLVPLTDALANTWQ--KQIGLDYGKV 133 (382)
T ss_pred HHcccccHHHHHHHHHH--hhccCCcchH
Confidence 98888888888878774 4455544443
No 136
>KOG0569|consensus
Probab=98.95 E-value=7.7e-09 Score=84.20 Aligned_cols=141 Identities=14% Similarity=0.060 Sum_probs=99.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHH
Q psy3312 20 ISQRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWG 99 (189)
Q Consensus 20 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (189)
...|+...+.+.+...-.+............+. ++.|++..++.+......+.
T Consensus 265 ~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~---------------------------~~aG~~~~~a~~an~~~g~v 317 (485)
T KOG0569|consen 265 PTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIF---------------------------KTAGFTPEEAQYANLGIGIV 317 (485)
T ss_pred cchhHHHHHHHHHHHHHHhcCcceeHHHHHHHH---------------------------HHcCCCHHHHHHHHHHHHHH
Confidence 344666555444544444444444555556666 77889999999999999999
Q ss_pred HHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchh-h----H-HHHHHHHHHhhcccc-chhHHHHHHHhhc
Q psy3312 100 YVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFG-A----V-GILCARFIVGLGQGP-AYPSMNVILAQWV 172 (189)
Q Consensus 100 ~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~-~----~-~~~~~r~l~G~~~g~-~~~~~~~~~~~~~ 172 (189)
..+.++++.++.||+|||+.++.+..+..+..+++........ . + ..+++.++..++.+. .-|...-+.+|++
T Consensus 318 ~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf 397 (485)
T KOG0569|consen 318 NLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELF 397 (485)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhC
Confidence 9999999999999999999999999998888877665432110 1 1 123344443333332 3477888999999
Q ss_pred CccchhhHHHHHhhc
Q psy3312 173 PKTERGRMGALVFAG 187 (189)
Q Consensus 173 ~~~~r~~~~~~~~~~ 187 (189)
|++.|..++++....
T Consensus 398 ~~~~R~aa~s~~~~~ 412 (485)
T KOG0569|consen 398 PQSARSAAQSVATAV 412 (485)
T ss_pred CccchHHHHHHHHHH
Confidence 999999999887653
No 137
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=98.94 E-value=2.4e-08 Score=81.67 Aligned_cols=107 Identities=14% Similarity=0.066 Sum_probs=77.4
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchh-hHHHHHHHHHHhhccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFG-AVGILCARFIVGLGQG 158 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~l~G~~~g 158 (189)
++.|.+.....+......+...++.++.+++.||+|||++++.+.++.+++.++......... ........++.+.+.+
T Consensus 299 ~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (479)
T PRK10077 299 KTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFA 378 (479)
T ss_pred HHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHh
Confidence 567777666677777778888999999999999999999999999988888776654432110 1122233334444433
Q ss_pred cc-hhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312 159 PA-YPSMNVILAQWVPKTERGRMGALVFA 186 (189)
Q Consensus 159 ~~-~~~~~~~~~~~~~~~~r~~~~~~~~~ 186 (189)
.. .+....+++|.+|+++|+++.|+.+.
T Consensus 379 ~~~~~~~~~~~~e~~p~~~r~~~~g~~~~ 407 (479)
T PRK10077 379 MSWGPVCWVLLSEIFPNAIRGKALAIAVA 407 (479)
T ss_pred ccccchhHHHhHhhCChhHHHHHHHHHHH
Confidence 32 36678899999999999999998654
No 138
>KOG0253|consensus
Probab=98.93 E-value=4.6e-09 Score=81.98 Aligned_cols=131 Identities=15% Similarity=0.237 Sum_probs=110.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHH
Q psy3312 20 ISQRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWG 99 (189)
Q Consensus 20 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (189)
.+..+...+.+...+..........+...|... ..++.+..+..++......+
T Consensus 73 grfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~---------------------------~~w~~s~~q~~llt~~v~~g 125 (528)
T KOG0253|consen 73 GRFQWYLFFVAGMGWMADAMEMMLLSLILPALD---------------------------EVWGPSEGQAPLLTLSVFLG 125 (528)
T ss_pred ccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHH---------------------------hhhchhhhhhhHHHHHHHhh
Confidence 344566666677777666655555666666665 77888889999999999999
Q ss_pred HHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhh
Q psy3312 100 YVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGR 179 (189)
Q Consensus 100 ~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~ 179 (189)
..+++..+|.++|++|||+.+....+...+...+.+.+++ +..+++.|.+.|+|.|+ .|...++-.|..|..+|..
T Consensus 126 mllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spn---f~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~ 201 (528)
T KOG0253|consen 126 MLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPN---FASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWL 201 (528)
T ss_pred hhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCC---eehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCc
Confidence 9999999999999999999999999999999999999988 77999999999999998 7888889999999888875
Q ss_pred HH
Q psy3312 180 MG 181 (189)
Q Consensus 180 ~~ 181 (189)
-+
T Consensus 202 ~~ 203 (528)
T KOG0253|consen 202 LT 203 (528)
T ss_pred ch
Confidence 43
No 139
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=98.93 E-value=9.8e-09 Score=92.22 Aligned_cols=104 Identities=17% Similarity=0.196 Sum_probs=91.2
Q ss_pred eeeecccc-chhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccc
Q psy3312 80 YEFDWDER-TQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQG 158 (189)
Q Consensus 80 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g 158 (189)
+.+|++.. +.+++.+...++.+++.++.|++.||+++++++.++.++.+++.++..+..+ .+.+++..++.|++.+
T Consensus 261 ~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~ 337 (1146)
T PRK08633 261 EVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPS---LASVLVLFFLFGFSAG 337 (1146)
T ss_pred HHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHH
Confidence 66788888 8999999999999999999999999999999988888888877777776665 6777788899999999
Q ss_pred cchhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312 159 PAYPSMNVILAQWVPKTERGRMGALVFA 186 (189)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 186 (189)
...+...+++.+.+|++.||+++|+.+.
T Consensus 338 ~~~~~~~~~~~~~~p~~~rg~~~~~~~~ 365 (1146)
T PRK08633 338 LFIVPLNALIQFRAPEKELGKVLAANNF 365 (1146)
T ss_pred HhhHHHHHHHhhcCCccchhhhhHHHHH
Confidence 8888899999999999999999988764
No 140
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=98.91 E-value=1.4e-08 Score=80.34 Aligned_cols=105 Identities=26% Similarity=0.286 Sum_probs=93.0
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP 159 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (189)
.++|++..+..++.....+..++++++.|+|.||+|.|+++..+++++.+.++...+... ..-++++-.+.|+..|+
T Consensus 281 ~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~---~~~f~i~gll~g~s~G~ 357 (438)
T COG2270 281 ADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEG---ELDFWILGLLVGTSLGG 357 (438)
T ss_pred HHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccc---cHHHHHHHHHHHHhcch
Confidence 689999999999999999999999999999999999999999999998887776555544 34556777889999999
Q ss_pred chhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 160 AYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
.++...++.++.+|+++-++.+|++...
T Consensus 358 ~qA~SRSy~~~lvp~~k~~~fFglyalt 385 (438)
T COG2270 358 AQASSRSYLARLVPKGKEGRFFGLYALT 385 (438)
T ss_pred HHHHHHHHHHHhCCCccccceeehhhhh
Confidence 9999999999999999999999988754
No 141
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=98.91 E-value=4.6e-08 Score=78.56 Aligned_cols=106 Identities=13% Similarity=0.187 Sum_probs=74.8
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHH-HHHHHHHHHHHHHHHHhh--chhhHHHHHHHHHHhhc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLG-FGLLVSTLATLATPLAAR--SFGAVGILCARFIVGLG 156 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~r~l~G~~ 156 (189)
+++|++..+.+++.+...++..++.++.|+++||+|||+.+. .+.+...+..+.....+. .++.+...+..++.|++
T Consensus 250 ~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~ 329 (402)
T TIGR00897 250 AELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIF 329 (402)
T ss_pred HHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHH
Confidence 568888888899888999999999999999999999988764 333333333333332221 11255666778888888
Q ss_pred cccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 157 QGPAYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 157 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
.+...+ ....+.|.. |++|+++.|+.+..
T Consensus 330 ~~~~~~-~~~~~~~~~-~~~~g~~~g~~~~~ 358 (402)
T TIGR00897 330 LAGYVP-LAAVFPTLA-PKHKGAAMSVLNLS 358 (402)
T ss_pred HHHHHH-HHHHHHhhC-cchhHHHHHHHHHH
Confidence 776544 445667765 56899999988764
No 142
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=98.90 E-value=2.5e-08 Score=82.65 Aligned_cols=105 Identities=23% Similarity=0.200 Sum_probs=96.2
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP 159 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (189)
+++|.++..+|++.+...+|.+++.++.+++.+|+++++++..+.+..+++.+..++.++ .+..++..++.|++...
T Consensus 247 ~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~---~~~~~~~l~l~G~~~~~ 323 (524)
T PF05977_consen 247 DVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPS---FWLALIALFLAGAAWII 323 (524)
T ss_pred HHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchH---HHHHHHHHHHHHHHHHH
Confidence 678889999999999999999999999999999999999999999999998888888887 78888888999999888
Q ss_pred chhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 160 AYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
......+.+.+..|++.||+.++++...
T Consensus 324 ~~~~~~t~~Q~~~P~~~~GRv~si~~~~ 351 (524)
T PF05977_consen 324 ANSSLNTLVQLSVPDWVRGRVFSIYQMV 351 (524)
T ss_pred HHHHHHHHHHHhCCHHHHhHHHHHHHHH
Confidence 8888999999999999999999998653
No 143
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=98.89 E-value=2.7e-08 Score=78.28 Aligned_cols=107 Identities=12% Similarity=0.069 Sum_probs=71.9
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCC-chhHH-HHHHH-HHHHHHHHHHHhhchhhHHHHHHHHHHhhc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGG-KYVLG-FGLLV-STLATLATPLAARSFGAVGILCARFIVGLG 156 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~-r~~l~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~ 156 (189)
+++|+++.+.+++.+...++..++.++.|++.||+.+ |+... ..... ..++.......+... .+...+..++.|+.
T Consensus 245 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~ 323 (379)
T TIGR00881 245 QEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAAN-PLMDLICLFALGFL 323 (379)
T ss_pred HHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchh-HHHHHHHHHHHHHH
Confidence 5678888899999999999999999999999998643 33222 22111 111112211111111 44455666677766
Q ss_pred cccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 157 QGPAYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 157 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
..+..+....+..|.+|+++|+++.|+.+..
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 354 (379)
T TIGR00881 324 VYGPQMLIGVIASELAPKKAAGTAAGFVGFF 354 (379)
T ss_pred HhhhhHHHHHHHHHhcCcchhHHHHHHHHHh
Confidence 5556666677899999999999999998754
No 144
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=98.89 E-value=4.1e-08 Score=78.54 Aligned_cols=95 Identities=19% Similarity=0.242 Sum_probs=79.1
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHH
Q psy3312 89 QGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVIL 168 (189)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~ 168 (189)
.+.+.++..++..++.++.|++.||+|||+.+..+.+...+..+...+.++ .+.+++.+++.|++.+...+....++
T Consensus 260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~ 336 (408)
T PRK09874 260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQT---PLQLGILRFLLGAADGALLPAVQTLL 336 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHhhhHhhHHHHHHHH
Confidence 455556677888899999999999999999999988877777766666555 67778889999999999999999999
Q ss_pred HhhcCccchhhHHHHHhh
Q psy3312 169 AQWVPKTERGRMGALVFA 186 (189)
Q Consensus 169 ~~~~~~~~r~~~~~~~~~ 186 (189)
.+..|+++|++.+++.+.
T Consensus 337 ~~~~~~~~~g~~~~~~~~ 354 (408)
T PRK09874 337 VYNSSNQIAGRIFSYNQS 354 (408)
T ss_pred HHhCCcccceeeehHHHH
Confidence 999999999998887654
No 145
>PRK09528 lacY galactoside permease; Reviewed
Probab=98.89 E-value=2.2e-08 Score=80.72 Aligned_cols=51 Identities=18% Similarity=-0.000 Sum_probs=45.6
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHH
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLA 130 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~ 130 (189)
+++|+++.+.+++.++..++..+++++.|+++||+|||+++..+....++.
T Consensus 39 ~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~ 89 (420)
T PRK09528 39 DINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVL 89 (420)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 679999999999999999999999999999999999999988766555443
No 146
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=98.89 E-value=7.3e-08 Score=74.97 Aligned_cols=98 Identities=11% Similarity=0.182 Sum_probs=77.1
Q ss_pred eeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccc
Q psy3312 81 EFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPA 160 (189)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~ 160 (189)
.+|+++.+.++..+.+..+.+++.++.+++.||+|+|+++.++.++..++.++....+. .. .....++.|++.+..
T Consensus 172 ~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~---~~-~~~~~~l~g~~~s~i 247 (310)
T TIGR01272 172 ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHG---YV-AMWFVLALGLFNSIM 247 (310)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCC---HH-HHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999988888777776655544433 22 233555789999999
Q ss_pred hhHHHHHHHhhcCccchhhHHHH
Q psy3312 161 YPSMNVILAQWVPKTERGRMGAL 183 (189)
Q Consensus 161 ~~~~~~~~~~~~~~~~r~~~~~~ 183 (189)
+|...+...+.+|++ .+++.++
T Consensus 248 ~P~~~s~a~~~~~~~-~~~asai 269 (310)
T TIGR01272 248 FPTIFSLALNALGRH-TSQGSGI 269 (310)
T ss_pred HHHHHHHHHhhhhhh-hhhhHHH
Confidence 999999998988753 3444444
No 147
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=98.89 E-value=2.2e-08 Score=81.79 Aligned_cols=105 Identities=21% Similarity=0.151 Sum_probs=82.1
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhh--CCchhHHH--HHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhh
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERY--GGKYVLGF--GLLVSTLATLATPLAARSFGAVGILCARFIVGL 155 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--g~r~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~ 155 (189)
+++|++..+.+++.+...++.++++++.|++.||. ++|+.... ++++..+..++.....+ ++.+++.+++.|+
T Consensus 269 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~---~~~~~i~~~~~G~ 345 (455)
T TIGR00892 269 KDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGD---YTGLVIYCIFFGL 345 (455)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhch---HHHHHHHHHHHHH
Confidence 55788999999999999999999999999999974 33433333 33333444444445555 7778889999999
Q ss_pred ccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 156 GQGPAYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 156 ~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
+.+...+....++.|.+|++++++..++.+..
T Consensus 346 ~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 377 (455)
T TIGR00892 346 SFGSVGALLFEVLMDLVGAQRFSSAVGLVTIV 377 (455)
T ss_pred HhchHHHHHHHHHHHHhhHHHHhhHHhHHHHH
Confidence 99988899999999999999999999988754
No 148
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=98.88 E-value=7.2e-09 Score=82.06 Aligned_cols=107 Identities=15% Similarity=0.158 Sum_probs=84.1
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhc--hhhHHHHHHHHHHhhcc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARS--FGAVGILCARFIVGLGQ 157 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~r~l~G~~~ 157 (189)
+++|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+.++..++..+....... ...+.+.+..++.|++.
T Consensus 235 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 314 (385)
T TIGR00710 235 DIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGN 314 (385)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 5688888899999999999999999999999999999999888887777766655543211 11344555677788888
Q ss_pred ccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 158 GPAYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 158 g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
+...+.......|..| ++|+++.++.+..
T Consensus 315 ~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~ 343 (385)
T TIGR00710 315 SMISSIAMAYALEDFP-HVAGTASALFGTL 343 (385)
T ss_pred HHHHHHHHHHHhccCc-ccchHHHHHHHHH
Confidence 8888888888888886 6899998887643
No 149
>KOG2325|consensus
Probab=98.87 E-value=2.2e-08 Score=81.29 Aligned_cols=105 Identities=19% Similarity=0.207 Sum_probs=87.5
Q ss_pred eeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCC-chhHHHHHHHHHHHHHHH-HHHhhch-hhHHHHHHHHHHhhcc
Q psy3312 81 EFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGG-KYVLGFGLLVSTLATLAT-PLAARSF-GAVGILCARFIVGLGQ 157 (189)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~-r~~l~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~r~l~G~~~ 157 (189)
|.+.+.+..|++.++..++.+++.+.+|++..|.+. |+.++.+++...+++++. .+..... ..+.++++|++.|+|.
T Consensus 65 D~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~ 144 (488)
T KOG2325|consen 65 DPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGV 144 (488)
T ss_pred CCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCc
Confidence 356677788999999999999999999999999997 888999999999999988 4332222 3688999999999987
Q ss_pred ccchhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312 158 GPAYPSMNVILAQWVPKTERGRMGALVFA 186 (189)
Q Consensus 158 g~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 186 (189)
| .....-.++++-...++|.++++....
T Consensus 145 ~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~ 172 (488)
T KOG2325|consen 145 G-NFAVLRAYIADASTVEDRPRAFAATSG 172 (488)
T ss_pred c-cHHHHHHHHHhccCccchHHHHHHhhh
Confidence 6 457788999998888899988887654
No 150
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=98.86 E-value=1.3e-08 Score=76.30 Aligned_cols=118 Identities=14% Similarity=0.096 Sum_probs=94.6
Q ss_pred HHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCc
Q psy3312 38 YVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGK 117 (189)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r 117 (189)
......++..-|.++ +.+|++.+|...+.....+|..++ ++.|.+.|++|++
T Consensus 15 ~Gt~Y~Fs~yS~~Lk---------------------------~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~ 66 (250)
T PF06813_consen 15 SGTTYTFSAYSPQLK---------------------------SRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPW 66 (250)
T ss_pred cCcccchhhhhHHHH---------------------------HHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchH
Confidence 345556788888888 899999999999999999998875 8889999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhch----hhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHH
Q psy3312 118 YVLGFGLLVSTLATLATPLAARSF----GAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALV 184 (189)
Q Consensus 118 ~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~ 184 (189)
.++.+|.+...++..+..++-+.. ++|.+.+..++.|.+......+......+.|| ++||++.|+.
T Consensus 67 ~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgil 136 (250)
T PF06813_consen 67 VVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGIL 136 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhh
Confidence 999999999999988776654332 36777777777777766666666777778896 6899988875
No 151
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=98.85 E-value=1.1e-08 Score=82.64 Aligned_cols=107 Identities=10% Similarity=-0.043 Sum_probs=84.6
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhh----hCCc-hhHHHHHHHHHHHHHHHHHHhhch---hhHHHHHHHH
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAER----YGGK-YVLGFGLLVSTLATLATPLAARSF---GAVGILCARF 151 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~g~r-~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~r~ 151 (189)
+++|+++.+.+++.++..+..++..|+.|+++|| +||| +.++.+.+..+++.+++...++.. ..+++++.++
T Consensus 28 ~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (437)
T TIGR00792 28 DVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYI 107 (437)
T ss_pred HccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHH
Confidence 7899999999999999999999999999999997 6774 467778777777777666655321 1456677888
Q ss_pred HHhhccccchhHHHHHHHhhc-CccchhhHHHHHhh
Q psy3312 152 IVGLGQGPAYPSMNVILAQWV-PKTERGRMGALVFA 186 (189)
Q Consensus 152 l~G~~~g~~~~~~~~~~~~~~-~~~~r~~~~~~~~~ 186 (189)
+.+++.+.......++..|.. ++++|++..++...
T Consensus 108 ~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~ 143 (437)
T TIGR00792 108 LLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRF 143 (437)
T ss_pred HHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHH
Confidence 888888877777778888887 46899988776543
No 152
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=98.84 E-value=3.6e-08 Score=79.69 Aligned_cols=101 Identities=17% Similarity=0.118 Sum_probs=79.6
Q ss_pred cccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHH
Q psy3312 85 DERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSM 164 (189)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~ 164 (189)
+..+.+++.....++.+++.++++++.||+|+|+++..+.++..++.++..+.++ +.+.+.+..++.|++.+...+..
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~ 332 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGS--NLPLILVLIILAGFGQNFVTGLV 332 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcch--hHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777888999999999999999999999999998888877766655432 15566777788899998888889
Q ss_pred HHHHHhhcC-------ccchhhHHHHHhhc
Q psy3312 165 NVILAQWVP-------KTERGRMGALVFAG 187 (189)
Q Consensus 165 ~~~~~~~~~-------~~~r~~~~~~~~~~ 187 (189)
.++++|..+ ++.+|...|+.+..
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ 362 (437)
T TIGR00792 333 WALVADTVDYGEWKTGVRAEGLVYSVRTFV 362 (437)
T ss_pred HHHHhhhhhhhhhhcCccchHHHHHHHHHH
Confidence 999998875 45578888877653
No 153
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=98.83 E-value=8.2e-08 Score=78.29 Aligned_cols=106 Identities=9% Similarity=0.052 Sum_probs=67.8
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhh--CCchhH-HHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERY--GGKYVL-GFGLLVSTLATLATPLAARSFGAVGILCARFIVGLG 156 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--g~r~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~ 156 (189)
++.|++..+.+++...+.++..++.++.|+++||+ +||+.. .....+..++.++........ .+..++..++.|.+
T Consensus 282 ~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~ 360 (452)
T PRK11273 282 EVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGN-PTVDMACMIVIGFL 360 (452)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccC-hHHHHHHHHHHHHH
Confidence 55788888888888888899999999999999999 555432 222233333333222222111 33444455555554
Q ss_pred cccchhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312 157 QGPAYPSMNVILAQWVPKTERGRMGALVFA 186 (189)
Q Consensus 157 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 186 (189)
..........+..|.+|+++||++.|+.+.
T Consensus 361 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~ 390 (452)
T PRK11273 361 IYGPVMLIGLHALELAPKKAAGTAAGFTGL 390 (452)
T ss_pred HHhHHHHHHHHHHHHcChhhhhhHHHHHHH
Confidence 433333344567899999999999998754
No 154
>PRK11663 regulatory protein UhpC; Provisional
Probab=98.83 E-value=9.8e-08 Score=77.45 Aligned_cols=107 Identities=14% Similarity=-0.032 Sum_probs=66.0
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhh--CCchhH-HHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERY--GGKYVL-GFGLLVSTLATLATPLAARSFGAVGILCARFIVGLG 156 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--g~r~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~ 156 (189)
+++|++..+.++..+.+.++..++.++.|+++||+ ++|+.. ....+...+........+..+ .....+..+..|++
T Consensus 272 ~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~ 350 (434)
T PRK11663 272 ETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFAS-YVMQAACFFTIGFF 350 (434)
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHccccc-HHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999 333322 221111111111111112111 22333334444544
Q ss_pred cccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 157 QGPAYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 157 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
............+|.+|+++|++..|+.+..
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 381 (434)
T PRK11663 351 VFGPQMLIGMAAAECSHKEAAGAATGFVGLF 381 (434)
T ss_pred HhhHHHHHHHHHHhcccHhhHHhHHHHHHHH
Confidence 3333333445678999999999999988754
No 155
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=98.82 E-value=5.8e-08 Score=77.08 Aligned_cols=127 Identities=20% Similarity=0.217 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhhhhhhh
Q psy3312 30 GFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGAL 109 (189)
Q Consensus 30 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 109 (189)
.....+.....+..+++.-|.+. +..|++.+..+++...+.++..++..+.|+
T Consensus 217 l~~t~l~~~g~F~~ftYi~P~L~---------------------------~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGr 269 (394)
T COG2814 217 LLATFLFMTGHFALYTYIRPFLE---------------------------SVAGFSVSAVSLVLLAFGIAGFIGNLLGGR 269 (394)
T ss_pred HHHHHHHHcchhhhHHhHHHHHH---------------------------HccCCCHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333344455556777888887 788999999999999999999999999999
Q ss_pred hhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 110 IAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 110 l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
+.|| +.|+.+.....+.++..+.+.+..+. .+..++.-+++|+..+.........+++ ..|+.+..+.++....
T Consensus 270 l~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~--~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa 343 (394)
T COG2814 270 LADR-GPRRALIAALLLLALALLALTFTGAS--PALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAA 343 (394)
T ss_pred hccc-cchhHHHHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHH
Confidence 9999 99999988888877777766665553 4566666677888877666666666666 4467888877776543
No 156
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=98.82 E-value=9.2e-08 Score=74.58 Aligned_cols=88 Identities=15% Similarity=0.218 Sum_probs=76.2
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP 159 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (189)
+++|+++.+++.+....+...++..++.|.++||+|||+.-+..++++.++++ ....++ ++.++++|++.|++...
T Consensus 62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~---~~~L~~GRvlgGiaTSL 137 (354)
T PF05631_consen 62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSN---YPVLLLGRVLGGIATSL 137 (354)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccc---cHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999988886 344455 88999999999999988
Q ss_pred chhHHHH-HHHhh
Q psy3312 160 AYPSMNV-ILAQW 171 (189)
Q Consensus 160 ~~~~~~~-~~~~~ 171 (189)
.+..--+ ++.|.
T Consensus 138 LfS~FEsW~V~Eh 150 (354)
T PF05631_consen 138 LFSAFESWMVHEH 150 (354)
T ss_pred HHHHHHHHHHHHH
Confidence 8776666 44444
No 157
>KOG2563|consensus
Probab=98.81 E-value=4.1e-08 Score=78.32 Aligned_cols=141 Identities=13% Similarity=0.060 Sum_probs=110.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHH
Q psy3312 19 LISQRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFW 98 (189)
Q Consensus 19 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (189)
-.++||.+++...+..+.+......++...-... ..|+ +.....|...+|++
T Consensus 39 Vy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~---------------------------~~Yg-s~~~~~wlsmIym~ 90 (480)
T KOG2563|consen 39 VYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVN---------------------------SFYG-SSSAADWLSMIYMV 90 (480)
T ss_pred cchhHhHHHHHHHHHHhcCcchheeehhHHHHHH---------------------------HHhc-chHHHHHHHHHHHH
Confidence 3456787777666666666666666665544443 5666 66678898999999
Q ss_pred HHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhc---hhhH--HHHHHHHHHhhccccchhHHHHHHHhhcC
Q psy3312 99 GYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARS---FGAV--GILCARFIVGLGQGPAYPSMNVILAQWVP 173 (189)
Q Consensus 99 ~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~r~l~G~~~g~~~~~~~~~~~~~~~ 173 (189)
.++...+++-|+.||+|-|..++++..+..+++.+-..+... ..++ ....+..+.+..+-.....-..+..-|||
T Consensus 91 v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~ 170 (480)
T KOG2563|consen 91 VSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFP 170 (480)
T ss_pred HHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCC
Confidence 999999999999999999999999999999999877665443 2245 66688888888887777777789999999
Q ss_pred ccchhhHHHHHhhc
Q psy3312 174 KTERGRMGALVFAG 187 (189)
Q Consensus 174 ~~~r~~~~~~~~~~ 187 (189)
+++|+.+..+...+
T Consensus 171 ~~qra~A~~~~v~~ 184 (480)
T KOG2563|consen 171 PDQRAIATVLGVMG 184 (480)
T ss_pred cchhhhhhhHHHhc
Confidence 99999998877655
No 158
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=98.79 E-value=9.9e-08 Score=78.87 Aligned_cols=93 Identities=11% Similarity=0.008 Sum_probs=59.6
Q ss_pred HHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhc-hhhHHHHHHHHHHhhccccchhHHHHHHHhhcC
Q psy3312 95 SFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARS-FGAVGILCARFIVGLGQGPAYPSMNVILAQWVP 173 (189)
Q Consensus 95 ~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~ 173 (189)
+..++.+++.++.++++||+|||++++++..+.+++..+.....+. .....+...-+...++..+..+....+.+|.+|
T Consensus 343 ~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p 422 (502)
T TIGR00887 343 IALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFP 422 (502)
T ss_pred HHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCc
Confidence 3445666788899999999999999988887777666555543211 001111111111112122234566777899999
Q ss_pred ccchhhHHHHHhhc
Q psy3312 174 KTERGRMGALVFAG 187 (189)
Q Consensus 174 ~~~r~~~~~~~~~~ 187 (189)
++.|+++.|+.+..
T Consensus 423 ~~~R~~~~g~~~~~ 436 (502)
T TIGR00887 423 TRYRSTAHGISAAS 436 (502)
T ss_pred hhHHHHHHHHHHHH
Confidence 99999999988754
No 159
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=98.78 E-value=8.9e-08 Score=75.95 Aligned_cols=138 Identities=17% Similarity=0.063 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhh
Q psy3312 25 LIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNH 104 (189)
Q Consensus 25 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (189)
..+..+.++.+..+..+..+.-..|.+. .+..|++..++.+..+.+=++...++
T Consensus 252 k~iW~la~a~vfvYivR~gi~dW~p~YL--------------------------~e~k~~s~~~a~~a~~lfE~agl~G~ 305 (448)
T COG2271 252 KLIWLLALANVFVYVVRYGINDWGPLYL--------------------------SEVKGFSLVKANWAISLFEVAGLPGT 305 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHH--------------------------HHhcCCCHHHHHHHHHHHHHHhhHHH
Confidence 3445577788888888888877777765 27788999999999999999999999
Q ss_pred hhhhhhhhhh--CCchh-HHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHH
Q psy3312 105 IPGALIAERY--GGKYV-LGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMG 181 (189)
Q Consensus 105 ~~~g~l~dr~--g~r~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~ 181 (189)
+++||++||+ |||.. -++.++...++.....++++.+ ++...++.++.|+..-+..-.......|..|++.-|++.
T Consensus 306 Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~-~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~ 384 (448)
T COG2271 306 LLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGS-YLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTAT 384 (448)
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCcc-HHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchh
Confidence 9999999998 56644 4444555555555556666543 678888889999988777777777889999999999999
Q ss_pred HHHhhcCC
Q psy3312 182 ALVFAGSY 189 (189)
Q Consensus 182 ~~~~~~~~ 189 (189)
|+....+|
T Consensus 385 Gf~Glf~Y 392 (448)
T COG2271 385 GFVGLFAY 392 (448)
T ss_pred chhhhHHH
Confidence 88766543
No 160
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.78 E-value=5e-08 Score=79.01 Aligned_cols=88 Identities=19% Similarity=0.235 Sum_probs=77.4
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHH
Q psy3312 87 RTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNV 166 (189)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~ 166 (189)
...+++..+..++..++.+++++++||+|+|+++..+.++..++.++..+.+..+ .+.+++..++.|++.+..+....+
T Consensus 260 ~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~l~gi~~~~~~~~~~a 338 (428)
T PF13347_consen 260 GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGS-PWLVLILFILAGIGYGAFFVIPWA 338 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhh-HHHHHHHHHHhHhhhccccccccc
Confidence 4567777888999999999999999999999999999999999998888876212 788899999999999999999999
Q ss_pred HHHhhcCcc
Q psy3312 167 ILAQWVPKT 175 (189)
Q Consensus 167 ~~~~~~~~~ 175 (189)
+++|..+.+
T Consensus 339 ~~ad~id~~ 347 (428)
T PF13347_consen 339 MLADVIDYD 347 (428)
T ss_pred ccccchhhH
Confidence 999998743
No 161
>PRK09848 glucuronide transporter; Provisional
Probab=98.78 E-value=5.1e-08 Score=79.35 Aligned_cols=106 Identities=23% Similarity=0.098 Sum_probs=79.3
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP 159 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (189)
+.+|.++...++......++.+++.++.+++.||+|+|+++..+.++..++.++..+.+... .+.+.+..++.|+|.+.
T Consensus 257 ~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~-~~~~~~~~~l~g~G~~~ 335 (448)
T PRK09848 257 YVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWS-LPVALVALAIASIGQGV 335 (448)
T ss_pred eecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchh-HHHHHHHHHHHHHHHHH
Confidence 45665554444444444677888999999999999999999999988887777666544322 66667778889999999
Q ss_pred chhHHHHHHHhhcCccc-------hhhHHHHHhh
Q psy3312 160 AYPSMNVILAQWVPKTE-------RGRMGALVFA 186 (189)
Q Consensus 160 ~~~~~~~~~~~~~~~~~-------r~~~~~~~~~ 186 (189)
..+...++.+|..+.++ +|...|+.+.
T Consensus 336 ~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~ 369 (448)
T PRK09848 336 TMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSF 369 (448)
T ss_pred HHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHH
Confidence 99999999999987653 4777766554
No 162
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=98.77 E-value=2.9e-08 Score=89.32 Aligned_cols=105 Identities=20% Similarity=0.167 Sum_probs=86.0
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHH--------------------hh
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLA--------------------AR 139 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--------------------~~ 139 (189)
+.+|.+..+.+++.+...++.+++.++.|+++|+.++++.+..+.++.++..+...+. .+
T Consensus 254 ~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (1140)
T PRK06814 254 ETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRH 333 (1140)
T ss_pred HHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccc
Confidence 5688899999999999999999999999999998887776666665555555434332 22
Q ss_pred chhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 140 SFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 140 ~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
.+.+++..++.|++.+...+...+++.+.+|+++||+++|+.+..
T Consensus 334 ---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~ 378 (1140)
T PRK06814 334 ---GWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVL 378 (1140)
T ss_pred ---cHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHH
Confidence 567778888899999988999999999999999999999987654
No 163
>TIGR00898 2A0119 cation transport protein.
Probab=98.77 E-value=6.1e-08 Score=79.92 Aligned_cols=94 Identities=15% Similarity=0.101 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhc
Q psy3312 93 LSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWV 172 (189)
Q Consensus 93 ~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~ 172 (189)
.....+..+++.++.+++.||+|||+.+.++.++.+++.++..+.++.. .+..++..++.+++.+..++....+.+|.+
T Consensus 361 ~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 439 (505)
T TIGR00898 361 LFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDL-YFLRTALAVLGKFGITSAFQMVYLYTAELY 439 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3455566778889999999999999999999988888887777665422 244455556667777777888899999999
Q ss_pred CccchhhHHHHHhhc
Q psy3312 173 PKTERGRMGALVFAG 187 (189)
Q Consensus 173 ~~~~r~~~~~~~~~~ 187 (189)
|++.|++++|+.+..
T Consensus 440 p~~~r~~~~g~~~~~ 454 (505)
T TIGR00898 440 PTVVRNLGVGVCSTM 454 (505)
T ss_pred cHHHHhhhHhHHHHH
Confidence 999999999987654
No 164
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=98.75 E-value=1.8e-07 Score=75.06 Aligned_cols=104 Identities=15% Similarity=0.049 Sum_probs=80.7
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP 159 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (189)
+.+|.++.+.+++.+...++.+++.+..+++.||.++|+++..+.++ ++...+..+.++ .+...+..++.|++.+.
T Consensus 234 ~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~~-~~~~~~~~~~~~---~~~~~~~~~~~G~~~g~ 309 (393)
T PRK11195 234 VALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGILM-GLVVLLMALQHS---LLPAYPLLILIGALGGF 309 (393)
T ss_pred HHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHH-HHHHHHHHHHhH---HHHHHHHHHHHHHhhhh
Confidence 66788999999999999999999999999999999999888777543 333333444444 66666777788998888
Q ss_pred chhHHHHHHHhhcCccc-hhhHHHHHhhc
Q psy3312 160 AYPSMNVILAQWVPKTE-RGRMGALVFAG 187 (189)
Q Consensus 160 ~~~~~~~~~~~~~~~~~-r~~~~~~~~~~ 187 (189)
..+...+.+.+..|++. +|++.++.+..
T Consensus 310 ~~~~~~~~~q~~~~~~~~~g~~~a~~~~~ 338 (393)
T PRK11195 310 FVVPMNALLQHRGHVLVGAGHSIAVQNFN 338 (393)
T ss_pred hhhhHHHHHHhhCcccccchhHHHHHhHH
Confidence 78878888888765544 68888776654
No 165
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=98.74 E-value=1.9e-07 Score=75.37 Aligned_cols=103 Identities=14% Similarity=0.019 Sum_probs=64.1
Q ss_pred eeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchh-HHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccc
Q psy3312 82 FDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYV-LGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPA 160 (189)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~ 160 (189)
.+.+..+.+.+.....++..++.++.|+++||+++|+. +....++..++..+ ...... ....+..-.+.+++....
T Consensus 274 ~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~g~~~~ 350 (412)
T TIGR02332 274 QGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLL-ASATDH--NLIQLLGIIMASMGSFSA 350 (412)
T ss_pred CCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHH-HHhcCC--HHHHHHHHHHHHHHhhhh
Confidence 35567788888899999999999999999999997774 44444333333222 222211 122122222223333333
Q ss_pred hhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 161 YPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 161 ~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
.+.......|.+|+++|+++.|+.+..
T Consensus 351 ~~~~~~~~~~~~~~~~~~~a~g~~~~~ 377 (412)
T TIGR02332 351 MAIFWTTPDQSISLQARAIAIAVINAT 377 (412)
T ss_pred hhHHHhhcccccchHHHHHHHHHHHHh
Confidence 344445556789999999999988754
No 166
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=98.74 E-value=1.5e-07 Score=75.56 Aligned_cols=107 Identities=15% Similarity=0.124 Sum_probs=81.1
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhh--chhhHHHHHHHHHHhhcc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAAR--SFGAVGILCARFIVGLGQ 157 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~r~l~G~~~ 157 (189)
+++|+++.+.++......++..++.++.|++.||+++|+.+.++.++..++..+..+.+. ..+.+++.+..++.|++.
T Consensus 244 ~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~ 323 (406)
T PRK15402 244 SGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGI 323 (406)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHH
Confidence 567888888888877778888999999999999999999999888877777666655431 112556677788889888
Q ss_pred ccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 158 GPAYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 158 g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
+...+........ .++++|++..++.+..
T Consensus 324 ~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~ 352 (406)
T PRK15402 324 GLANAGLYRLTLF-SSDVSKGTVSAAMGML 352 (406)
T ss_pred HHHhhhHHHHHhh-hccccccHHHHHHHHH
Confidence 8776666555443 3458999999887654
No 167
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=98.73 E-value=1.7e-07 Score=74.92 Aligned_cols=108 Identities=14% Similarity=0.015 Sum_probs=75.4
Q ss_pred eeeeccccchhHHHHHHH-HHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhh---chhhHHHHHHHHHHhh
Q psy3312 80 YEFDWDERTQGLILSSFF-WGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAAR---SFGAVGILCARFIVGL 155 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~r~l~G~ 155 (189)
+|.|+++.+.+++..... ....++.++.|++.||+|+|+.+..+.++..+.......... ....+.+.....+.++
T Consensus 236 ~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (390)
T TIGR02718 236 VDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSL 315 (390)
T ss_pred HhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHH
Confidence 457999999999888765 466778899999999999999988877665333322221111 0113334445556667
Q ss_pred ccccchhHHHHHHHhhcCc-cchhhHHHHHhhc
Q psy3312 156 GQGPAYPSMNVILAQWVPK-TERGRMGALVFAG 187 (189)
Q Consensus 156 ~~g~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~ 187 (189)
+.+..++.......+..++ +++++.+++.++.
T Consensus 316 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 348 (390)
T TIGR02718 316 ITGITSVAIYTAFMRFAGDGDQAGTDVTAVQST 348 (390)
T ss_pred HHHHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 7777778888888888876 7889998887653
No 168
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.73 E-value=1.8e-07 Score=72.94 Aligned_cols=103 Identities=17% Similarity=0.206 Sum_probs=93.7
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP 159 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (189)
+++|++.+.++++.+...+...+.+++..+++.|+|.++.+..++++.+++.++=... + .+.++.+-.+.|.+.+.
T Consensus 40 ~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~---~~~L~~gt~l~G~gIav 115 (395)
T COG2807 40 QDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-G---LPLLFLGTLLAGAGIAV 115 (395)
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-c---HHHHHHHHHHHHhhHHH
Confidence 9999999999999999999999999999999999999999999999999999877665 3 56788899999999999
Q ss_pred chhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 160 AYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
.....+.++-+.|| ++-+..+++|...
T Consensus 116 ~nVLLPslIK~~Fp-k~~~~mtglYs~s 142 (395)
T COG2807 116 INVLLPSLIKRDFP-KRVGLMTGLYSTS 142 (395)
T ss_pred HHHhhhHHHHhhcc-cchhhHHhHHHHH
Confidence 99999999999996 6788888888653
No 169
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=98.71 E-value=1.2e-07 Score=75.98 Aligned_cols=98 Identities=11% Similarity=0.053 Sum_probs=77.1
Q ss_pred eccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchh
Q psy3312 83 DWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYP 162 (189)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~ 162 (189)
+.+....+.+.+...+...++.++.|++.||+|+|+.+.++.++.++...+....++ .+.+++.++++|++......
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~---~~~~~~~~~l~g~~~~~~~~ 326 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATT---ALEVVILKMLHAFEVPFLLV 326 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHHHHHHHH
Confidence 444556788888888888999999999999999999999998888887776666655 77778889999988766556
Q ss_pred HHHHHHHhhcCccchhhHHHH
Q psy3312 163 SMNVILAQWVPKTERGRMGAL 183 (189)
Q Consensus 163 ~~~~~~~~~~~~~~r~~~~~~ 183 (189)
....+..+..+++.+++..+.
T Consensus 327 ~~~~~~~~~~~~~~~at~~~~ 347 (396)
T TIGR00882 327 GCFKYITSQFDVRLSATIYLI 347 (396)
T ss_pred HHHHHHHHhCCcceEEEeehH
Confidence 666677788887777765444
No 170
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=98.71 E-value=4.9e-07 Score=73.20 Aligned_cols=103 Identities=20% Similarity=0.323 Sum_probs=85.7
Q ss_pred eeccccchhHHHHHHHHHHHHhhhhhhhhhhhh-CCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccc
Q psy3312 82 FDWDERTQGLILSSFFWGYVLNHIPGALIAERY-GGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPA 160 (189)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~ 160 (189)
+|++++++.-+.+.+..-.-+..++.||++||+ |+|+.+..|.++.+++.++.+.....+ ...+.++.++.++|.|..
T Consensus 56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~-~~gl~i~L~~I~iG~Gl~ 134 (498)
T COG3104 56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSG-PGGLYIGLALIIVGTGLF 134 (498)
T ss_pred CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcccccc-ccHHHHHHHHHHhccccc
Confidence 679999988888888887788999999999998 999999999999999999988875111 557788888888999999
Q ss_pred hhHHHHHHHhhcCccc--hhhHHHHHh
Q psy3312 161 YPSMNVILAQWVPKTE--RGRMGALVF 185 (189)
Q Consensus 161 ~~~~~~~~~~~~~~~~--r~~~~~~~~ 185 (189)
-+....++.|.+|+++ |-.++++++
T Consensus 135 K~NiS~llg~ly~~~DprrD~gFt~fY 161 (498)
T COG3104 135 KPNISSLLGELYPKDDPRRDGGFTLFY 161 (498)
T ss_pred cccHHHHHHHhcCCCCcccCCCccEEE
Confidence 9999999999998754 344444443
No 171
>PRK11043 putative transporter; Provisional
Probab=98.71 E-value=2.3e-07 Score=74.33 Aligned_cols=106 Identities=17% Similarity=0.241 Sum_probs=77.6
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHH---hhchhhHHHHHHHHHHhhc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLA---ARSFGAVGILCARFIVGLG 156 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~r~l~G~~ 156 (189)
+++|++..+.++......++..++..+.+++.||+|+|+.+....+..+++.+..... .... .+.+++...+.|++
T Consensus 231 ~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 309 (401)
T PRK11043 231 EQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPS-LVPLLIPFCVMAAA 309 (401)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHH
Confidence 5678888888988888888899999999999999999987766655554444332221 1111 44555666778888
Q ss_pred cccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 157 QGPAYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 157 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
.+..++.......+..| ++|+++.++.+..
T Consensus 310 ~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~ 339 (401)
T PRK11043 310 NGAIYPIVVAQALRPFP-QATGKAAALQNTL 339 (401)
T ss_pred HHHHHHHHHHHHhhhCc-ccChHHHHHHHHH
Confidence 88888888887777775 6899999988753
No 172
>PRK11010 ampG muropeptide transporter; Validated
Probab=98.71 E-value=3e-07 Score=75.88 Aligned_cols=107 Identities=15% Similarity=0.092 Sum_probs=76.1
Q ss_pred eeeeccccchhHHHH-HHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHH-HhhchhhHHHHHHHHHHhhcc
Q psy3312 80 YEFDWDERTQGLILS-SFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPL-AARSFGAVGILCARFIVGLGQ 157 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~r~l~G~~~ 157 (189)
+++|++..+.+++.. ...++.+++.++.|++.||+|+|+.+.++.++.++..++... .....+.+.+.+..++..+..
T Consensus 251 ~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~ 330 (491)
T PRK11010 251 RGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCG 330 (491)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 568999999999874 566899999999999999999998877766655554433221 111111444445556655555
Q ss_pred ccchhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312 158 GPAYPSMNVILAQWVPKTERGRMGALVFA 186 (189)
Q Consensus 158 g~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 186 (189)
|...+...++..+..+++.+++..++.++
T Consensus 331 g~~~~~~~a~~~~l~~~~~~~t~~gl~~s 359 (491)
T PRK11010 331 GMGTAAFVALLMTLCNKSFSATQFALLSA 359 (491)
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 55667778888899998888888887765
No 173
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=98.71 E-value=1.8e-07 Score=75.19 Aligned_cols=104 Identities=15% Similarity=0.098 Sum_probs=78.0
Q ss_pred eeeccccchhHHHHHHHHHHHHhhhhhhhhhh-hhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312 81 EFDWDERTQGLILSSFFWGYVLNHIPGALIAE-RYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP 159 (189)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (189)
+.+.++.+.+++.+...++......+.+++.| |++.++.+..++++.+++..+....++ .+.+.+..++.|++.+.
T Consensus 237 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~l~~~g~~~ 313 (400)
T PRK11646 237 DIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSN---LQQLFTLICLFYIGSII 313 (400)
T ss_pred hhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHH
Confidence 33335677888877777766666666666665 566677777787777777776666665 66666777788888887
Q ss_pred chhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 160 AYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
..+...+++.+..|+++|++..|+.+..
T Consensus 314 ~~p~~~~~~~~~~p~~~~g~~~g~~~~~ 341 (400)
T PRK11646 314 AEPARETLSASLADARARGSYMGFSRLG 341 (400)
T ss_pred HHccHHHHHHhcCCcccchhhhhHHHHH
Confidence 8888899999999999999999987653
No 174
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=98.70 E-value=3.9e-07 Score=72.19 Aligned_cols=106 Identities=12% Similarity=0.056 Sum_probs=73.5
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHh-hchhhHHHHHHHHHHhhccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAA-RSFGAVGILCARFIVGLGQG 158 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~r~l~G~~~g 158 (189)
+++|+++.+.+++.....++.+++.++.|++.||+|+|+.+..+.++..+..+...... .....+...+...+.+.+.+
T Consensus 223 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (377)
T PRK11102 223 ELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVS 302 (377)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 56788889999999999999999999999999999999998888776544433322221 11114444444444444444
Q ss_pred cchhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312 159 PAYPSMNVILAQWVPKTERGRMGALVFA 186 (189)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 186 (189)
.........+.|..| ++|++..++.+.
T Consensus 303 ~~~~~~~~~~~~~~~-~~~g~~~~~~~~ 329 (377)
T PRK11102 303 MISSNAMAVILDEFP-HMAGTASSLAGT 329 (377)
T ss_pred HhhHHHHHHHhcccc-ccchHHHHHHHH
Confidence 455556667777765 789988887654
No 175
>PRK10054 putative transporter; Provisional
Probab=98.68 E-value=1.4e-07 Score=75.73 Aligned_cols=102 Identities=9% Similarity=-0.004 Sum_probs=80.8
Q ss_pred eeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHH-hhchhhHHHHHHHHHHhhcccc
Q psy3312 81 EFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLA-ARSFGAVGILCARFIVGLGQGP 159 (189)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~l~G~~~g~ 159 (189)
+.+.+....+++.....+.....+++.|++.||+++|+.+..++++..++..+..+. .+ .+.+++..++.|++.+.
T Consensus 238 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~ 314 (395)
T PRK10054 238 DSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNS---LLLWGMSAAVFTVGEII 314 (395)
T ss_pred ccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchH---HHHHHHHHHHHHHHHHH
Confidence 345556667777777777777788899999999999999999988887777666554 23 56667788899999887
Q ss_pred chhHHHHHHHhhcCccchhhHHHHHh
Q psy3312 160 AYPSMNVILAQWVPKTERGRMGALVF 185 (189)
Q Consensus 160 ~~~~~~~~~~~~~~~~~r~~~~~~~~ 185 (189)
..|.....+.+..|++.|++..+..+
T Consensus 315 ~~p~~~~~~~~~~p~~~~~~~~~~~~ 340 (395)
T PRK10054 315 YAPGEYMLIDHIAPPGMKASYFSAQS 340 (395)
T ss_pred HHhhHHHHHHHhCCcccceehHhHHH
Confidence 78888889999999999998877543
No 176
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=98.68 E-value=6.4e-07 Score=71.87 Aligned_cols=100 Identities=16% Similarity=0.083 Sum_probs=72.5
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHH-HHHHHHHHHhhchhhHHHHHHHHHHhhccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVST-LATLATPLAARSFGAVGILCARFIVGLGQG 158 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g 158 (189)
+++|++..+.+++.....++..++.++.+++.||.+ |+.+..+.++.. ...++.....+ .+.+.+..++.|++.+
T Consensus 245 ~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~l~G~~~~ 320 (394)
T PRK10213 245 NLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWGSD---KIVATGVAIIWGLTFA 320 (394)
T ss_pred HhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHH
Confidence 677889888999999999999999999999999964 444444434433 33333333333 6677778888999998
Q ss_pred cchhHHHHHHHhhcCccchhhHHHHH
Q psy3312 159 PAYPSMNVILAQWVPKTERGRMGALV 184 (189)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~r~~~~~~~ 184 (189)
...+...+++.+..| +++++..++.
T Consensus 321 ~~~~~~~~~~~~~~~-~~~~~~~~~~ 345 (394)
T PRK10213 321 LVPVGWSTWITRSLA-DQAEKAGSIQ 345 (394)
T ss_pred hhhHHHHHHHHHHCc-ccHHHHHHHH
Confidence 888888888898886 4455554433
No 177
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=98.67 E-value=2.6e-07 Score=75.29 Aligned_cols=81 Identities=11% Similarity=0.011 Sum_probs=55.8
Q ss_pred HHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHH-HHhhc--hhhHHHHHHHHHHhhccccchhHHHHHHHh
Q psy3312 94 SSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATP-LAARS--FGAVGILCARFIVGLGQGPAYPSMNVILAQ 170 (189)
Q Consensus 94 ~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~ 170 (189)
....+...+..+++|+++||+|+|+++.++.+...+...... ..+.. .+++.+.+..+...++.|........++.+
T Consensus 293 ~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~ 372 (462)
T PRK15034 293 FFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAV 372 (462)
T ss_pred HHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHH
Confidence 345677888999999999999999999988887776664322 22211 125555555555556666666777778888
Q ss_pred hcCc
Q psy3312 171 WVPK 174 (189)
Q Consensus 171 ~~~~ 174 (189)
.+|+
T Consensus 373 ~f~~ 376 (462)
T PRK15034 373 IFRQ 376 (462)
T ss_pred HHhh
Confidence 8864
No 178
>PRK10133 L-fucose transporter; Provisional
Probab=98.66 E-value=3.9e-07 Score=74.21 Aligned_cols=100 Identities=12% Similarity=0.085 Sum_probs=79.9
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP 159 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (189)
+.+|.++.+.++....+.++..++.++.|++.||+|+|+++..+.++..+...+..+.++ . ..+....+.|++.+.
T Consensus 288 ~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~---~-~~~~~~~l~glg~~~ 363 (438)
T PRK10133 288 EIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGG---H-VGLIALTLCSAFMSI 363 (438)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCC---h-HHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999999999998887777666555544433 2 224566788999999
Q ss_pred chhHHHHHHHhhcCccchhhHHHHH
Q psy3312 160 AYPSMNVILAQWVPKTERGRMGALV 184 (189)
Q Consensus 160 ~~~~~~~~~~~~~~~~~r~~~~~~~ 184 (189)
.+|.......+.+|+ +.+.+.++.
T Consensus 364 i~P~~~s~a~~~~~~-~~~~as~l~ 387 (438)
T PRK10133 364 QYPTIFSLGIKNLGQ-DTKYGSSFI 387 (438)
T ss_pred HHHHHHHHHHcccch-hhccchhHH
Confidence 999999999998865 344444443
No 179
>PRK10091 MFS transport protein AraJ; Provisional
Probab=98.62 E-value=6.5e-07 Score=71.41 Aligned_cols=99 Identities=16% Similarity=0.142 Sum_probs=69.5
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP 159 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (189)
+.+|+++.+.+++.+...++.+++.++.|++.||+|+|+.+..+.++..++.++.....+. .+..++..++.+++...
T Consensus 228 ~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~g~~~ 305 (382)
T PRK10091 228 FISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGM--KTASLIFAFICCAGLFA 305 (382)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHh
Confidence 5678899999999999999999999999999999999999988888777766554432221 34445555566665544
Q ss_pred chhHHH-HHHHhhcCccchhhH
Q psy3312 160 AYPSMN-VILAQWVPKTERGRM 180 (189)
Q Consensus 160 ~~~~~~-~~~~~~~~~~~r~~~ 180 (189)
..+... ....+..+++.++..
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~ 327 (382)
T PRK10091 306 LSAPLQILLLQNAKGGELLGAA 327 (382)
T ss_pred hhHHHHHHHHHhCCcchHHHHH
Confidence 444333 344455555556654
No 180
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=98.60 E-value=1.1e-06 Score=66.33 Aligned_cols=99 Identities=38% Similarity=0.644 Sum_probs=80.7
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHH
Q psy3312 87 RTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNV 166 (189)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~ 166 (189)
...++..+.+.++..++.++.|.+.||+|||+.+..+.....++.++..+..+ ...+.+++.|+++|++.+...+....
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~ 117 (338)
T COG0477 39 LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPN-VGLALLLILRLLQGLGGGGLLPVASA 117 (338)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 46788899999999999999999999999998888887665555555555544 22778899999999999999999999
Q ss_pred HHHhhcCc-cchhhHHHHHhh
Q psy3312 167 ILAQWVPK-TERGRMGALVFA 186 (189)
Q Consensus 167 ~~~~~~~~-~~r~~~~~~~~~ 186 (189)
++.|+.|+ ++|+...+....
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~ 138 (338)
T COG0477 118 LLSEWFPEATERGLAVGLVTL 138 (338)
T ss_pred HHHHhcCchhHHHHHHHHHHH
Confidence 99999987 678877776544
No 181
>KOG4686|consensus
Probab=98.60 E-value=4.6e-09 Score=79.48 Aligned_cols=107 Identities=18% Similarity=0.231 Sum_probs=90.1
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhh-hCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAER-YGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQG 158 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g 158 (189)
.+.+++.++..++.+++.+..++-.++.|++.|| +|-|..-++-+++..++.++++.-.-.+.+|.+..+|++.|+|.-
T Consensus 72 ~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgE 151 (459)
T KOG4686|consen 72 LDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGE 151 (459)
T ss_pred cccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCch
Confidence 7778888888999999999999999999999995 587777777777777788777654433349999999999999988
Q ss_pred cchhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312 159 PAYPSMNVILAQWVPKTERGRMGALVFA 186 (189)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 186 (189)
..-.+++.+..-||.-||.+..+|+..+
T Consensus 152 SlAVaQN~yav~wFKGKELn~vfGlqlS 179 (459)
T KOG4686|consen 152 SLAVAQNKYAVYWFKGKELNFVFGLQLS 179 (459)
T ss_pred hhhhhhcceeEEEecCccccchhhHHHH
Confidence 8888999999999999999998888654
No 182
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=98.60 E-value=2.6e-07 Score=75.94 Aligned_cols=105 Identities=14% Similarity=0.094 Sum_probs=67.9
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCch-------hHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHH
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKY-------VLGFGLLVSTLATLATPLAARSFGAVGILCARFI 152 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~-------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l 152 (189)
+++|++..+.+.+.+...++.+++.++.|+++||++||+ .+.+..++.++..++.....+ .+...+..++
T Consensus 281 ~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~---~~~~~~~~~l 357 (476)
T PLN00028 281 DRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANS---LGAAIVVMIL 357 (476)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccch---HHHHHHHHHH
Confidence 567899999999999999999999999999999998752 222222222222233333333 3344444455
Q ss_pred HhhccccchhHHHHHHHhhcCccchhhHHHHHhhcC
Q psy3312 153 VGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAGS 188 (189)
Q Consensus 153 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 188 (189)
.+++.+...+....++.+.. +++|+...|+.+.+.
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g 392 (476)
T PLN00028 358 FSIFVQAACGATFGIVPFVS-RRSLGVISGLTGAGG 392 (476)
T ss_pred HHHHHHHhhhhhcccCcccC-hhhchhhhhhhhccc
Confidence 55554444444555556654 578999999876654
No 183
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=98.59 E-value=5.3e-07 Score=72.01 Aligned_cols=93 Identities=8% Similarity=0.023 Sum_probs=65.2
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP 159 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (189)
+++|+++.+.+.+.+...++.+++.++.+++.||+|||+.+..+.++..++..+..+.+. .+..+....+.+.+.+.
T Consensus 232 ~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~g~~~ 308 (392)
T PRK10473 232 EQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPS---HAVSLFGITLICAGFSV 308 (392)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 567888888899889999999999999999999999999999998888887777666554 33333333343443333
Q ss_pred chhHHHHHHHhhcCccch
Q psy3312 160 AYPSMNVILAQWVPKTER 177 (189)
Q Consensus 160 ~~~~~~~~~~~~~~~~~r 177 (189)
..+. ....+..|.++|
T Consensus 309 ~~~~--~~~~~~~~~~~~ 324 (392)
T PRK10473 309 GFGV--AMSQALGPFSLR 324 (392)
T ss_pred HhHH--HHHHHhccCccc
Confidence 3332 233445555444
No 184
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.59 E-value=7.4e-07 Score=71.71 Aligned_cols=106 Identities=16% Similarity=0.120 Sum_probs=85.5
Q ss_pred eeee-ccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHH----HHHHHHh
Q psy3312 80 YEFD-WDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGIL----CARFIVG 154 (189)
Q Consensus 80 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~r~l~G 154 (189)
++.| .+....+.+.+...+.=++.-...+++..|+|.|+++.++++..++=..+.+...+. .+... ....++|
T Consensus 235 ~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~--~~~~~~~~~l~q~lhG 312 (400)
T PF03825_consen 235 QELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDP--WPFIVALQLLGQLLHG 312 (400)
T ss_pred HHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCC--cHHHHHHHHHHHhhhh
Confidence 4555 566666777677777778888999999999999999999999999998888887331 22322 3345699
Q ss_pred hccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 155 LGQGPAYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 155 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
+..+..+.+...++.+.+|++.|+++.+++...
T Consensus 313 ~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~ 345 (400)
T PF03825_consen 313 LTFGLFHAASVRYIDRIAPPELRATAQGLYSAL 345 (400)
T ss_pred HHHHHHHHHHHHHHHHhCCccchHHHHHHHHHH
Confidence 999999999999999999999999999998653
No 185
>PRK09669 putative symporter YagG; Provisional
Probab=98.58 E-value=3.5e-07 Score=74.42 Aligned_cols=106 Identities=10% Similarity=-0.040 Sum_probs=79.0
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhh----hCCc-hhHHHHHHHHHHHHHHHHHHhhch---hhHHHHHHHH
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAER----YGGK-YVLGFGLLVSTLATLATPLAARSF---GAVGILCARF 151 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~g~r-~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~r~ 151 (189)
+++|+++...+.+..+..+..++..|+.|+++|| +||| +.++.+.+..++...+....++.+ ..+++++..+
T Consensus 38 ~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~ 117 (444)
T PRK09669 38 DVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYI 117 (444)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHH
Confidence 7899999999999999999999999999999998 7774 556667666666665544444211 1456666666
Q ss_pred HHhhccccchhHHHHHHHhhc-CccchhhHHHHHh
Q psy3312 152 IVGLGQGPAYPSMNVILAQWV-PKTERGRMGALVF 185 (189)
Q Consensus 152 l~G~~~g~~~~~~~~~~~~~~-~~~~r~~~~~~~~ 185 (189)
+.+.+.........++.+|+. ++++|.+..++..
T Consensus 118 l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~ 152 (444)
T PRK09669 118 LLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRF 152 (444)
T ss_pred HHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHH
Confidence 777666666667778999988 4588987655543
No 186
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=98.56 E-value=8.2e-07 Score=70.72 Aligned_cols=101 Identities=15% Similarity=0.117 Sum_probs=60.9
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCc---hhHH-HHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhh
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGK---YVLG-FGLLVSTLATLATPLAARSFGAVGILCARFIVGL 155 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r---~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~ 155 (189)
++.+++.. .+.......+...++ .++++||.+|| +... ...++.++......+..+ .+..++.-.+.|+
T Consensus 220 ~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~l~~~ 292 (368)
T TIGR00903 220 RPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELN---RLALFAFIGIAGL 292 (368)
T ss_pred HHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccc---cHHHHHHHHHHHH
Confidence 44555543 444444444444444 57888887654 3322 233333333333333333 3344455566777
Q ss_pred ccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 156 GQGPAYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 156 ~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
+....++....+.+|.+|++.|+++.|+.+..
T Consensus 293 ~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~ 324 (368)
T TIGR00903 293 LMLPAYAIIMDWIGKFCDKELHGKAAGAIGFT 324 (368)
T ss_pred hhhhhHHHHHHHHHHhcchhhcCcccchhhHH
Confidence 77777788889999999999999999998764
No 187
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.56 E-value=1.8e-06 Score=69.73 Aligned_cols=94 Identities=10% Similarity=0.015 Sum_probs=72.9
Q ss_pred cccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHH
Q psy3312 85 DERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSM 164 (189)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~ 164 (189)
+....+...+.+.....++.++.+++.||+++|+++.+..++..+..++....++ .. .+...++.|++.+..+|..
T Consensus 267 ~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~---~~-~~~~l~~~glf~s~~fp~i 342 (410)
T TIGR00885 267 TAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGG---HV-GLYCLTLCSAFMSLMFPTI 342 (410)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCC---hH-HHHHHHHHHHHHHHHHHHH
Confidence 3344455566677888999999999999999999998888888888777776555 32 3566678889999999999
Q ss_pred HHHHHhhcCccchhhHHH
Q psy3312 165 NVILAQWVPKTERGRMGA 182 (189)
Q Consensus 165 ~~~~~~~~~~~~r~~~~~ 182 (189)
..+..+..+++.+....+
T Consensus 343 ~sl~~~~~g~~~~~~s~~ 360 (410)
T TIGR00885 343 YGIALKGLGQDTKYGAAG 360 (410)
T ss_pred HHHHHhhhhhhhhhhHHH
Confidence 999999998766543333
No 188
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=98.54 E-value=1.3e-06 Score=70.97 Aligned_cols=106 Identities=8% Similarity=0.004 Sum_probs=65.4
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHH---HHHHHHHHhhchhhHHHHHHHHHHhhc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTL---ATLATPLAARSFGAVGILCARFIVGLG 156 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~r~l~G~~ 156 (189)
+..|+++.+.++....+.++.+++.++.|++.||+++++....+.....+ +.......+... .+...+..++.|++
T Consensus 280 ~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~ 358 (438)
T TIGR00712 280 EVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGN-PLVDMICMIVIGFL 358 (438)
T ss_pred HccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHH
Confidence 55788888899998999999999999999999999754322223222211 111111111111 33333444455554
Q ss_pred cccchhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312 157 QGPAYPSMNVILAQWVPKTERGRMGALVFA 186 (189)
Q Consensus 157 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 186 (189)
..+..........|.+|+++|+++.|+.+.
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 388 (438)
T TIGR00712 359 IYGPVMLIGLHALELAPKKAAGTAAGFTGL 388 (438)
T ss_pred HccHHHHHHHHHHHhcChhheeeehhhhch
Confidence 333223334567899999999999998754
No 189
>KOG0253|consensus
Probab=98.53 E-value=3.8e-07 Score=71.56 Aligned_cols=87 Identities=15% Similarity=0.099 Sum_probs=65.9
Q ss_pred HHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchh-hHHHHHHHHHHhhccccchhHHHHHHHhhcCcc
Q psy3312 97 FWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFG-AVGILCARFIVGLGQGPAYPSMNVILAQWVPKT 175 (189)
Q Consensus 97 ~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~ 175 (189)
.+.-.-|.++.+++.||+|||+.+..+.++++++.++...+.+... ..++..+|++ ..+.+...+++..|.+|.+
T Consensus 391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~araf----isg~fqvaYvYtPEVyPTa 466 (528)
T KOG0253|consen 391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAF----ISGAFQVAYVYTPEVYPTA 466 (528)
T ss_pred HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHH----HhchheEEEEecCcccchh
Confidence 3445568889999999999999999999999998887776655221 1233455544 4555666788999999999
Q ss_pred chhhHHHHHhhc
Q psy3312 176 ERGRMGALVFAG 187 (189)
Q Consensus 176 ~r~~~~~~~~~~ 187 (189)
.|+++.|.....
T Consensus 467 vRatgvGtcSsm 478 (528)
T KOG0253|consen 467 VRATGVGTCSSM 478 (528)
T ss_pred hhhcchhhhhhH
Confidence 999999887653
No 190
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.52 E-value=1.1e-06 Score=72.31 Aligned_cols=89 Identities=15% Similarity=0.067 Sum_probs=66.4
Q ss_pred cccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHH--hhchhhHHHHHHHHHHhhccccchh
Q psy3312 85 DERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLA--ARSFGAVGILCARFIVGLGQGPAYP 162 (189)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~r~l~G~~~g~~~~ 162 (189)
+....+++.+...++.+++.++++++.||+|+|+.+.++.++..++.+...+. ...++.+.+++.-++.|++.+...+
T Consensus 264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~ 343 (473)
T PRK10429 264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV 343 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 44456666677778889999999999999999999988887766555544321 1111255666777888899988888
Q ss_pred HHHHHHHhhcC
Q psy3312 163 SMNVILAQWVP 173 (189)
Q Consensus 163 ~~~~~~~~~~~ 173 (189)
...++++|..+
T Consensus 344 ~~~am~ad~id 354 (473)
T PRK10429 344 LQVIMVADTVD 354 (473)
T ss_pred HHHHHHhhhhh
Confidence 88999999965
No 191
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=98.51 E-value=5.8e-07 Score=55.89 Aligned_cols=75 Identities=20% Similarity=0.299 Sum_probs=69.3
Q ss_pred HHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCc
Q psy3312 38 YVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGK 117 (189)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r 117 (189)
...+..+.+..|.|. ++.+++.++.+++.+..++||.+|.+...++.++..++
T Consensus 5 GigRFayTplLP~M~---------------------------~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~ 57 (85)
T PF06779_consen 5 GIGRFAYTPLLPLMQ---------------------------ADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPR 57 (85)
T ss_pred hhHHHHHHhHhHHHH---------------------------HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH
Confidence 456778899999998 89999999999999999999999999999999998889
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh
Q psy3312 118 YVLGFGLLVSTLATLATPLAAR 139 (189)
Q Consensus 118 ~~l~~~~~~~~~~~~~~~~~~~ 139 (189)
+.+..+.+...+..+.+++..+
T Consensus 58 ~~~~~~l~~~~~~~~~ma~~~~ 79 (85)
T PF06779_consen 58 RLLRAGLLLTVLSTAAMALTHS 79 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999888877
No 192
>PRK09669 putative symporter YagG; Provisional
Probab=98.51 E-value=1.4e-06 Score=70.97 Aligned_cols=84 Identities=8% Similarity=0.056 Sum_probs=63.4
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHH
Q psy3312 89 QGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVIL 168 (189)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~ 168 (189)
.+.+.....+..+++.++++++.||+|+|+.+..+.+...+......+.+... .+.+++..++.|++.+...+...+++
T Consensus 266 ~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~g~~~~~~~~~~~am~ 344 (444)
T PRK09669 266 ATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSN-VWLIFALNILFNFIQNLTTPLQWSMF 344 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcch-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777888999999999999999999888776665444333332222 66667777889999999999999999
Q ss_pred HhhcC
Q psy3312 169 AQWVP 173 (189)
Q Consensus 169 ~~~~~ 173 (189)
+|..+
T Consensus 345 ad~~d 349 (444)
T PRK09669 345 SDVVD 349 (444)
T ss_pred Hhhhh
Confidence 99885
No 193
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.49 E-value=2.7e-06 Score=68.50 Aligned_cols=91 Identities=18% Similarity=0.211 Sum_probs=74.5
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhC-CchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYG-GKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQG 158 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g-~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g 158 (189)
++.|++..|+|++.+...+..+++++++|.++||++ +|+++.+..++.++.........+ ++.+++..++..+...
T Consensus 30 ~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~---f~~~~~~~~l~~~~~~ 106 (400)
T PF03825_consen 30 ESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSS---FWWLFVIMLLFSFFFS 106 (400)
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHc
Confidence 778899999999999999999999999999999986 467777777776665555555555 7777777778888888
Q ss_pred cchhHHHHHHHhhcC
Q psy3312 159 PAYPSMNVILAQWVP 173 (189)
Q Consensus 159 ~~~~~~~~~~~~~~~ 173 (189)
...|...++..+...
T Consensus 107 p~~pl~dsi~~~~~~ 121 (400)
T PF03825_consen 107 PTMPLSDSIALSYLG 121 (400)
T ss_pred cHHHHHHHHHHHHcc
Confidence 888888888888775
No 194
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=98.48 E-value=2e-06 Score=69.02 Aligned_cols=103 Identities=12% Similarity=0.123 Sum_probs=72.9
Q ss_pred eeeeccccchhHHHHHHH-HHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHH---HHHhhchhhHHHHHHH----H
Q psy3312 80 YEFDWDERTQGLILSSFF-WGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLAT---PLAARSFGAVGILCAR----F 151 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~r----~ 151 (189)
+++|+++.+.+++..... ++.+++.++.|++.||+|+|+.+..+.++..+..+.. +..++ +.+.++... +
T Consensus 238 ~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~~~~~~~ 315 (402)
T PRK11902 238 RGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPK--HLWTMALAIGIENL 315 (402)
T ss_pred HhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHH
Confidence 668899999999876544 5688999999999999999998877776665554433 22221 144444433 3
Q ss_pred HHhhccccchhHHHHHHHhhcCccchhhHHHHH
Q psy3312 152 IVGLGQGPAYPSMNVILAQWVPKTERGRMGALV 184 (189)
Q Consensus 152 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~ 184 (189)
..|++.+...+....++.+.+|.++++...++.
T Consensus 316 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (402)
T PRK11902 316 CGGMGTAAFVALLMALCNRSFSATQYALLSALA 348 (402)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 556667777888888999999888777644443
No 195
>KOG2504|consensus
Probab=98.47 E-value=3e-06 Score=70.19 Aligned_cols=131 Identities=21% Similarity=0.213 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhhh
Q psy3312 26 IGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHI 105 (189)
Q Consensus 26 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (189)
.+++..+...+............|... ...+.+..+...+.++..+..+++.+
T Consensus 299 ~fl~~~~~~~~~~~g~~~p~~~l~~~~---------------------------~~~g~~~~~aa~l~Siigi~~i~gRi 351 (509)
T KOG2504|consen 299 KFLLLALSNLFAYLGFNVPFVYLPSYA---------------------------KSLGLSSNDAAFLLSIIGVSDIIGRI 351 (509)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------hhcCCChhhhHHHHHHHHHhhhhhhh
Confidence 334455555566666666667777777 67889999999999999999999999
Q ss_pred hhhhhhhhhC--CchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHH
Q psy3312 106 PGALIAERYG--GKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGAL 183 (189)
Q Consensus 106 ~~g~l~dr~g--~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~ 183 (189)
+.|+++|+.. ++.+..++++..+++.+..++..+ ++.+++.-.+.|+..|........++.|..+.++-..+.|+
T Consensus 352 ~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~---~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl 428 (509)
T KOG2504|consen 352 ILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATT---YVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGL 428 (509)
T ss_pred hhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHH
Confidence 9999999998 445666777777788888888888 88999999999999999888888899999999998888888
Q ss_pred Hhh
Q psy3312 184 VFA 186 (189)
Q Consensus 184 ~~~ 186 (189)
...
T Consensus 429 ~l~ 431 (509)
T KOG2504|consen 429 LLL 431 (509)
T ss_pred HHH
Confidence 654
No 196
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.47 E-value=5.6e-06 Score=64.78 Aligned_cols=105 Identities=16% Similarity=0.218 Sum_probs=84.5
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhh-CCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERY-GGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQG 158 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g 158 (189)
.|-|+++.+.|++.+...+..+...+....+++|. ++|+.......+..++...+.+.+... .+.. -++.|+|.|
T Consensus 236 i~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~-~~lw---~~llG~G~G 311 (395)
T COG2807 236 IDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQL-PILW---ALLLGLGQG 311 (395)
T ss_pred HHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhH-HHHH---HHHHhCccc
Confidence 88999999999999999999999999999999976 677888888888888888887887754 2221 488999999
Q ss_pred cchhHHHHHHHhhcCc-cchhhHHHHHhhcC
Q psy3312 159 PAYPSMNVILAQWVPK-TERGRMGALVFAGS 188 (189)
Q Consensus 159 ~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~ 188 (189)
..++....++....+. ++-++..++.+...
T Consensus 312 ~~F~laL~li~~rs~~a~~Aa~LSgmaQg~G 342 (395)
T COG2807 312 GAFPLALTLILLRSSDAAIAAALSGMAQGVG 342 (395)
T ss_pred hHHHHHHHHHHhhcCChHHHHHHHHHhhhhh
Confidence 9999999999888764 44455555555443
No 197
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=98.45 E-value=3.8e-06 Score=68.71 Aligned_cols=108 Identities=12% Similarity=-0.025 Sum_probs=65.2
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhH--------HHHHHHHHHHHHHHHHHhhchhhHHHHHHHH
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVL--------GFGLLVSTLATLATPLAARSFGAVGILCARF 151 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 151 (189)
+.+|.+..+.++..+...++..++.++.|+++||+++|+.. ..+.........+........+.+..++...
T Consensus 290 ~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (465)
T TIGR00894 290 WVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILT 369 (465)
T ss_pred HHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 66888999999999999999999999999999998755321 1111111111111111111111333344445
Q ss_pred HHhhccccchhHHHHHHHhhcCccchhhHHHHHhhcC
Q psy3312 152 IVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAGS 188 (189)
Q Consensus 152 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 188 (189)
+.+.+.+...+.......|..| +.+|...++.+...
T Consensus 370 l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~ 405 (465)
T TIGR00894 370 LANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPG 405 (465)
T ss_pred HHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHH
Confidence 5555555555555555567665 58899988877643
No 198
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.40 E-value=9.4e-06 Score=65.19 Aligned_cols=102 Identities=12% Similarity=0.069 Sum_probs=87.3
Q ss_pred eeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccc
Q psy3312 81 EFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPA 160 (189)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~ 160 (189)
+-+.+....|.+.+...+.-++.-.+..++.+|+|.|+.++++..+.++-..+++++++ .+.+.+.+.+.|+-.+..
T Consensus 253 ~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~---~~~i~~~klLH~~e~~l~ 329 (412)
T PF01306_consen 253 SAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATN---PWVISLIKLLHALEFPLL 329 (412)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--S---HHHHHHHHHHHHHHHHHH
T ss_pred ccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcc---hHHHHHHHHHHHHHHHHH
Confidence 33445567899888888889999999999999999999999999999999999999998 889999999999999999
Q ss_pred hhHHHHHHHhhcCccchhhHHHHHh
Q psy3312 161 YPSMNVILAQWVPKTERGRMGALVF 185 (189)
Q Consensus 161 ~~~~~~~~~~~~~~~~r~~~~~~~~ 185 (189)
......++++.+|++..++...+.+
T Consensus 330 lva~fkYI~~~fd~rlsAt~y~v~~ 354 (412)
T PF01306_consen 330 LVAAFKYITAHFDKRLSATLYLVGF 354 (412)
T ss_dssp HHHHHHHHHHHS-GGGHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHhHHHHHHHHHH
Confidence 9999999999999988888877754
No 199
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.38 E-value=7.7e-06 Score=67.79 Aligned_cols=98 Identities=14% Similarity=0.058 Sum_probs=76.9
Q ss_pred hhHHHHHHHHHHHHhhhhh----hhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhch------hhHHHHHHHHHHhhccc
Q psy3312 89 QGLILSSFFWGYVLNHIPG----ALIAERYGGKYVLGFGLLVSTLATLATPLAARSF------GAVGILCARFIVGLGQG 158 (189)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~----g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~r~l~G~~~g 158 (189)
.+++.+...+..++..++. +++.+|++..+.+.+|+++.+++.++.+...+.. +.++++..++++|+|+.
T Consensus 318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~ 397 (500)
T PRK09584 318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL 397 (500)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence 4566666666666666666 5556666666788889999999888777665421 14578889999999999
Q ss_pred cchhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312 159 PAYPSMNVILAQWVPKTERGRMGALVFA 186 (189)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 186 (189)
...|....++.+..|++.||+++|+++.
T Consensus 398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l 425 (500)
T PRK09584 398 MISGLGLAMVAQLVPQRLMGFIMGSWFL 425 (500)
T ss_pred HHhHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 9999999999999999999999999863
No 200
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=98.38 E-value=3.3e-06 Score=67.48 Aligned_cols=106 Identities=11% Similarity=-0.015 Sum_probs=73.1
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHH-HHHHHHHHHhhchhhHHHHHHHHHHhhccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVST-LATLATPLAARSFGAVGILCARFIVGLGQG 158 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g 158 (189)
+.+|.++.+.+++.....++..++.++.+++.||++++........... +............ .+.+....++.|++.+
T Consensus 236 ~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~ 314 (394)
T PRK11652 236 AVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMN-VWTLLVPAALFFFGAG 314 (394)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHH
Confidence 4478888888998888888999999999999999984333322222221 1111111111111 5566777888999999
Q ss_pred cchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 159 PAYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
...+....+..|.+| +++++..++.+..
T Consensus 315 ~~~~~~~~~~~~~~~-~~~g~~~~~~~~~ 342 (394)
T PRK11652 315 MLFPLATSGAMEPFP-YLAGTAGALLGGL 342 (394)
T ss_pred HHHHHHHHHHHhhcc-ccchHHHHHHHHH
Confidence 889999999999886 5789888877643
No 201
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.38 E-value=2.2e-06 Score=70.45 Aligned_cols=104 Identities=13% Similarity=0.008 Sum_probs=80.5
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhh----hhCC-chhHHHHHHHHHHHHHHHHHHhhch---hhHHHHHHHH
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAE----RYGG-KYVLGFGLLVSTLATLATPLAARSF---GAVGILCARF 151 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~g~-r~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~r~ 151 (189)
+.+|+++..+|.+..+.-+.-++..|+.|.++| |+|| |+.++.+.+..+++..++...++.+ .++++++..+
T Consensus 35 ~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~ 114 (473)
T PRK10429 35 DVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYI 114 (473)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHH
Confidence 778999999999999999999999999999999 6698 5666677777777655554333211 1445566667
Q ss_pred HHhhccccchhHHHHHHHhhc-CccchhhHHHH
Q psy3312 152 IVGLGQGPAYPSMNVILAQWV-PKTERGRMGAL 183 (189)
Q Consensus 152 l~G~~~g~~~~~~~~~~~~~~-~~~~r~~~~~~ 183 (189)
+.+++.........++.+|.. +++||.+..++
T Consensus 115 l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~ 147 (473)
T PRK10429 115 LWGMTYTIMDIPFWSLVPTLTLDKREREQLVPY 147 (473)
T ss_pred HHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHH
Confidence 777777777778888999998 58899987776
No 202
>KOG4686|consensus
Probab=98.37 E-value=5e-06 Score=63.35 Aligned_cols=104 Identities=15% Similarity=0.093 Sum_probs=78.6
Q ss_pred ceeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHH-HHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcc
Q psy3312 79 HYEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFG-LLVSTLATLATPLAARSFGAVGILCARFIVGLGQ 157 (189)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~ 157 (189)
++++|+++..++.+.+......++.+++.|.++||+|++...+.+ ++...++.....+..- -=.+...+.|+..
T Consensus 292 ~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~l-----sPy~~m~~lGLsy 366 (459)
T KOG4686|consen 292 QKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTFL-----SPYTSMTFLGLSY 366 (459)
T ss_pred HHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhhc-----cHHHHHHHHhhhH
Confidence 388999999999999999999999999999999999999766654 4444444454444322 2245566777776
Q ss_pred ccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 158 GPAYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 158 g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
...-......++...|.++.|++.|..++-
T Consensus 367 sllAcslWP~va~~vpE~qLGTaygf~qsI 396 (459)
T KOG4686|consen 367 SLLACSLWPCVASLVPEEQLGTAYGFIQSI 396 (459)
T ss_pred HHHHHHHhhhhhhhCCHHHhcchHHHHHHH
Confidence 655555667888899999999999887653
No 203
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.35 E-value=4.9e-06 Score=67.62 Aligned_cols=93 Identities=25% Similarity=0.252 Sum_probs=78.5
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP 159 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (189)
..+|.+.....+.......+.+++.+++.++.+|+|+|+++..+.++..++..+..+.+... .+.+++..++.+++.+.
T Consensus 265 y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~-~~l~~~~~~i~~~g~~~ 343 (467)
T COG2211 265 YVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGS-VVLIVVALIIAGVGTGI 343 (467)
T ss_pred EEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcc-hHHHHHHHHHHHHHhhc
Confidence 34455566666777788888888899999999999999999999999999999988887333 77888888999999999
Q ss_pred chhHHHHHHHhhcC
Q psy3312 160 AYPSMNVILAQWVP 173 (189)
Q Consensus 160 ~~~~~~~~~~~~~~ 173 (189)
..+...++++|...
T Consensus 344 ~~~l~wam~~d~vD 357 (467)
T COG2211 344 ANPLPWAMVADTVD 357 (467)
T ss_pred cccccHHHhcchhh
Confidence 99988998888764
No 204
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=98.33 E-value=1e-05 Score=64.70 Aligned_cols=132 Identities=9% Similarity=-0.103 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHH--HHHHHHHHHhhh
Q psy3312 28 LLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLIL--SSFFWGYVLNHI 105 (189)
Q Consensus 28 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 105 (189)
..++..++.+........+..|.+. ++.|.+.++.|++. +...+...+..+
T Consensus 4 ~~~~~ly~~~g~~~~~~~p~lp~~l---------------------------~~~g~~~~~iGl~~~~~l~~~~~~l~~p 56 (390)
T TIGR02718 4 ITLGLLYLSQGIPIGLAMDALPTLL---------------------------REDGAPLTALAFLPLVGLPWVVKFLWAP 56 (390)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH---------------------------HHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777778888887 78899999999973 566777777888
Q ss_pred hh-hhhhhhhCCchhHHHHHHHH-HHHHHHHH-HHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHH
Q psy3312 106 PG-ALIAERYGGKYVLGFGLLVS-TLATLATP-LAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGA 182 (189)
Q Consensus 106 ~~-g~l~dr~g~r~~l~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~ 182 (189)
+. ++..||+||||.+++.+.+. .+...... +........+++...++.++..+...+..-.+..|..++++++...+
T Consensus 57 ~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~ 136 (390)
T TIGR02718 57 LVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNA 136 (390)
T ss_pred HHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHH
Confidence 88 55799999999875555332 21122122 11111112233444455556666666777778888888888877655
Q ss_pred HHhh
Q psy3312 183 LVFA 186 (189)
Q Consensus 183 ~~~~ 186 (189)
....
T Consensus 137 ~~~~ 140 (390)
T TIGR02718 137 VQIA 140 (390)
T ss_pred HHHH
Confidence 5443
No 205
>PF12832 MFS_1_like: MFS_1 like family
Probab=98.33 E-value=4.5e-06 Score=51.24 Aligned_cols=47 Identities=15% Similarity=0.178 Sum_probs=42.1
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHH
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLV 126 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~ 126 (189)
++.|+++.+.|.+.++..+...++.+++|.++||+++++.+.....+
T Consensus 28 ~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 28 KQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 67899999999999999999999999999999999998877665543
No 206
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=98.28 E-value=2.6e-05 Score=54.49 Aligned_cols=90 Identities=13% Similarity=0.269 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhh
Q psy3312 92 ILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQW 171 (189)
Q Consensus 92 ~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~ 171 (189)
-.++......++.++.+.+.+++|.|+.++++.+.+.+..... +-++ .+.++.+-++.|++.+..+.....++.+.
T Consensus 42 slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~---~~~l~~~s~l~G~~~a~lW~aqg~ylt~~ 117 (156)
T PF05978_consen 42 SLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPN---SYTLYPASALLGFGAALLWTAQGTYLTSY 117 (156)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-Hhhh---HHHHHHHHHHHhhhhHHhhHhhhHHHHHc
Confidence 3456667788888999999999999999999999988766543 3344 56788999999999999999999999999
Q ss_pred cCccchhhHHHHHh
Q psy3312 172 VPKTERGRMGALVF 185 (189)
Q Consensus 172 ~~~~~r~~~~~~~~ 185 (189)
..++.|++..+++-
T Consensus 118 s~~~~~~~~~~ifw 131 (156)
T PF05978_consen 118 STEETIGRNTGIFW 131 (156)
T ss_pred CCHHHHhhHHHHHH
Confidence 99999999888754
No 207
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=98.26 E-value=2.8e-05 Score=64.02 Aligned_cols=99 Identities=17% Similarity=0.056 Sum_probs=75.1
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhhhCC-----chhH--HHHHHHHHHHHHHHHHHhh------chhhHHHHHHHHHHhh
Q psy3312 89 QGLILSSFFWGYVLNHIPGALIAERYGG-----KYVL--GFGLLVSTLATLATPLAAR------SFGAVGILCARFIVGL 155 (189)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~-----r~~l--~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~r~l~G~ 155 (189)
.+++.+...+..++.+++..++..|.+| +... .+|+++.+++.....+... ..++++++...++.++
T Consensus 314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ 393 (475)
T TIGR00924 314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL 393 (475)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence 6777888888888888776654444433 3333 6777777777766654210 1138889999999999
Q ss_pred ccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 156 GQGPAYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 156 ~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
|+....|....++.+..|++.||+++|++..+
T Consensus 394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~ 425 (475)
T TIGR00924 394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLA 425 (475)
T ss_pred HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998754
No 208
>PRK11462 putative transporter; Provisional
Probab=98.20 E-value=2.5e-05 Score=64.07 Aligned_cols=85 Identities=11% Similarity=0.132 Sum_probs=55.4
Q ss_pred chhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHH
Q psy3312 88 TQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVI 167 (189)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~ 167 (189)
..+++...+.++.+++.+++++++||+|+|+++..+..+..+..++..+.+... .+.+++.-++.|++.+...+....+
T Consensus 264 ~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~g~~~~~~~~l~~~m 342 (460)
T PRK11462 264 VFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQA-SITMFVFIFVIGVLHQLVTPIQWVM 342 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666778888899999999999999999887755554444333333333221 2233444566677776666666677
Q ss_pred HHhhcC
Q psy3312 168 LAQWVP 173 (189)
Q Consensus 168 ~~~~~~ 173 (189)
++|..+
T Consensus 343 ~ad~~d 348 (460)
T PRK11462 343 MSDTVD 348 (460)
T ss_pred HHHhHh
Confidence 777665
No 209
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.18 E-value=4.8e-05 Score=62.94 Aligned_cols=99 Identities=17% Similarity=0.073 Sum_probs=75.8
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhhhCCchh-------HHHHHHHHHHHHHHHH-----HHhh--chhhHHHHHHHHHHh
Q psy3312 89 QGLILSSFFWGYVLNHIPGALIAERYGGKYV-------LGFGLLVSTLATLATP-----LAAR--SFGAVGILCARFIVG 154 (189)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-------l~~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~r~l~G 154 (189)
..++.+...+..++..++.+++.||+++|+. +.+|+++.+++.+... +... ..+.++++...++.|
T Consensus 311 ~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g 390 (489)
T PRK10207 311 PVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQS 390 (489)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Confidence 3455566666777888899999999999873 6677777666654321 2111 113677788899999
Q ss_pred hccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 155 LGQGPAYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 155 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
+|++...+....++.+..|++.++.++|+++..
T Consensus 391 ~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~ 423 (489)
T PRK10207 391 LGELFISALGLAMIAALVPQHLMGFILGMWFLT 423 (489)
T ss_pred HHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998753
No 210
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.17 E-value=8.9e-06 Score=66.87 Aligned_cols=94 Identities=10% Similarity=0.130 Sum_probs=70.2
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhC-----CchhHHHHHHHHH-HHHHHHHHHhhchhhHHHHHHHHHH
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYG-----GKYVLGFGLLVST-LATLATPLAARSFGAVGILCARFIV 153 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g-----~r~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~l~ 153 (189)
+++|++.++.+...+...+...+-.+ +|.++||++ ||+.++++.++.. +.....+..++ ......+..++.
T Consensus 54 ~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~--~~~~~~~~~~l~ 130 (468)
T TIGR00788 54 DDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVS--SAKVAAAFIFLA 130 (468)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccc--hHHHHHHHHHHH
Confidence 78999999999999999999888555 999999997 6777777776653 33232332222 133444578888
Q ss_pred hhccccchhHHHHHHHhhcCccch
Q psy3312 154 GLGQGPAYPSMNVILAQWVPKTER 177 (189)
Q Consensus 154 G~~~g~~~~~~~~~~~~~~~~~~r 177 (189)
+++.+....+.-++..|..+ +++
T Consensus 131 ~~~~a~~dv~~da~~~e~~~-~~~ 153 (468)
T TIGR00788 131 ALAKALYDVLVDSLYSERIR-ESP 153 (468)
T ss_pred HHHHHHHHHhHHHHHhhhhh-cCC
Confidence 99988888999999999997 444
No 211
>KOG3762|consensus
Probab=98.14 E-value=9.6e-06 Score=66.44 Aligned_cols=104 Identities=13% Similarity=0.099 Sum_probs=93.3
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP 159 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (189)
++.+-.+...|.....-..+-++.-++.+++..|+|+-+++.+++.+.++-.+..++..+ .|..+..-+++|+..+.
T Consensus 399 ed~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n---~W~vLPieilqgit~al 475 (618)
T KOG3762|consen 399 EDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQN---PWMVLPIEILQGITHAL 475 (618)
T ss_pred hhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcC---chheeeHHHHHHHHHHH
Confidence 456666677777777777888889999999999999999999999999999898888888 99999999999999999
Q ss_pred chhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312 160 AYPSMNVILAQWVPKTERGRMGALVFA 186 (189)
Q Consensus 160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~ 186 (189)
.+.++..+++...||+.|+++.++...
T Consensus 476 iWaa~~sY~s~vaPp~l~at~Q~l~~g 502 (618)
T KOG3762|consen 476 IWAAIISYASHVAPPGLRATAQGLLQG 502 (618)
T ss_pred HHHHHHHHHHhhCCCcchHHHHHHHHH
Confidence 999999999999999999999998754
No 212
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.14 E-value=0.00011 Score=58.56 Aligned_cols=108 Identities=18% Similarity=0.122 Sum_probs=92.3
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhh-hhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAE-RYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQG 158 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g 158 (189)
+.+|++..+...+......|..++-...|++.. |.++++....++....++..+..++...++.+.+...-++.|++.|
T Consensus 237 ~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G 316 (403)
T PF03209_consen 237 EVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNG 316 (403)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhh
Confidence 779999999999999999999999999998888 6677888888888888877766665544447888999999999999
Q ss_pred cchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 159 PAYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
.......+.+.+...+++.|..+|.|...
T Consensus 317 ~f~vgals~mM~lt~~~~aG~~mG~WGaa 345 (403)
T PF03209_consen 317 LFTVGALSLMMDLTSAGRAGLFMGAWGAA 345 (403)
T ss_pred HHHHHHHHHHHhCCCCcchhHHHHHHHHH
Confidence 99899999999999999999999988654
No 213
>KOG0254|consensus
Probab=98.14 E-value=1.8e-05 Score=65.76 Aligned_cols=105 Identities=17% Similarity=0.132 Sum_probs=69.8
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchh----------h-HHHHH
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFG----------A-VGILC 148 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~----------~-~~~~~ 148 (189)
+..+.+... .+...+..+...++..+...+.||+|||+.++.+.+...++.++.+....... . .....
T Consensus 323 ~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (513)
T KOG0254|consen 323 KSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFL 401 (513)
T ss_pred HhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHH
Confidence 445544332 44455666777788888899999999999999999999999887776543210 1 11122
Q ss_pred HHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312 149 ARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFA 186 (189)
Q Consensus 149 ~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 186 (189)
..++..+..+ ..+....+.+|.+|.+.|+++.++..+
T Consensus 402 ~~~v~~f~~g-~g~v~w~~~sEifp~~~r~~~~s~~~~ 438 (513)
T KOG0254|consen 402 CLFIFSFAIG-WGPVPWVIVSEIFPLRLRSKGASLAVA 438 (513)
T ss_pred HHHHHHHhcc-cccchhhhhhccCcHhHHhhhHHHHHH
Confidence 2222223222 234455688999999999999888654
No 214
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.05 E-value=8.2e-06 Score=66.13 Aligned_cols=107 Identities=13% Similarity=0.105 Sum_probs=84.8
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhh----hhCCch-hHHHHHHHHHHHHHHHHHH-h-hch---hhHHHHHH
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAE----RYGGKY-VLGFGLLVSTLATLATPLA-A-RSF---GAVGILCA 149 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~g~r~-~l~~~~~~~~~~~~~~~~~-~-~~~---~~~~~~~~ 149 (189)
+.+++++...+.+..+..+..++..|+.|.++| |+|||| .++++.+..+++..++... + +.+ ...++.+.
T Consensus 30 ~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~ 109 (428)
T PF13347_consen 30 DVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVF 109 (428)
T ss_pred HHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHH
Confidence 778999999999999999999999999999999 899765 5667778887777766655 3 111 13455777
Q ss_pred HHHHhhccccchhHHHHHHHhhcC-ccchhhHHHHHhh
Q psy3312 150 RFIVGLGQGPAYPSMNVILAQWVP-KTERGRMGALVFA 186 (189)
Q Consensus 150 r~l~G~~~g~~~~~~~~~~~~~~~-~~~r~~~~~~~~~ 186 (189)
.++..++.........++.+|..+ +++|.+..++-..
T Consensus 110 ~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~ 147 (428)
T PF13347_consen 110 YILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMI 147 (428)
T ss_pred HHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHH
Confidence 777788888888888999999997 4789887776543
No 215
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=98.02 E-value=0.00021 Score=56.90 Aligned_cols=115 Identities=22% Similarity=0.319 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhhhhhhh
Q psy3312 30 GFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGAL 109 (189)
Q Consensus 30 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 109 (189)
..++.++........+..++.+.. +..|.+..+.....+.+..+.++|.++..+
T Consensus 241 gvl~~FlYVG~Eva~gsfl~~y~~--------------------------~~~g~~~~~aa~~~s~~~~~~~vGRFig~~ 294 (422)
T COG0738 241 GVLAIFLYVGAEVAIGSFLVSYLE--------------------------ELLGLNEQQAAYYLSFFWVGFMVGRFIGSA 294 (422)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHH--------------------------hcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555566666666666550 337888899999999999999999999999
Q ss_pred hhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCc
Q psy3312 110 IAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPK 174 (189)
Q Consensus 110 l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~ 174 (189)
+..|+...|.+.+..+...+..+...+..+ .+. +...++.|+..+..+|...++..+..|.
T Consensus 295 lm~~~~~~k~Laf~a~~~ill~~~~~l~~g---~v~-~~~l~~ig~F~simfPTIfslal~~l~~ 355 (422)
T COG0738 295 LMSRIKPEKYLAFYALIAILLLLAVALIGG---VVA-LYALFLIGLFNSIMFPTIFSLALKNLGE 355 (422)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHHhcC---hHH-HHHHHHHHHHhHHHHHHHHHHHHhccCc
Confidence 999999999999888777777777777776 434 4555778999999999999999999884
No 216
>PRK09848 glucuronide transporter; Provisional
Probab=97.99 E-value=6.4e-05 Score=61.29 Aligned_cols=105 Identities=11% Similarity=-0.005 Sum_probs=71.1
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhh----CCchhH-HHHHHHHHHHHHHHHHHh-hc---hhhHHHHHHH
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERY----GGKYVL-GFGLLVSTLATLATPLAA-RS---FGAVGILCAR 150 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~----g~r~~l-~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~r 150 (189)
+.+|++..+.|.+..+..+..++..++.|+++||. ||||.. ..+.+...+...+....+ .. ...++..+..
T Consensus 37 ~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (448)
T PRK09848 37 DVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTY 116 (448)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHH
Confidence 77899999999999999999999999999999996 766644 555444443333321111 11 1133445556
Q ss_pred HHHhhccccchhHHHHHHHhhcC-ccchhhHHHHH
Q psy3312 151 FIVGLGQGPAYPSMNVILAQWVP-KTERGRMGALV 184 (189)
Q Consensus 151 ~l~G~~~g~~~~~~~~~~~~~~~-~~~r~~~~~~~ 184 (189)
++.+++.+...+...++..+... +++|.+..++-
T Consensus 117 ~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r 151 (448)
T PRK09848 117 MGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAAR 151 (448)
T ss_pred HHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHH
Confidence 67777777777666677676654 46788775543
No 217
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=97.90 E-value=1.2e-05 Score=66.03 Aligned_cols=108 Identities=16% Similarity=0.058 Sum_probs=88.4
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHh-hc------hhhHHHHHHHHH
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAA-RS------FGAVGILCARFI 152 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~r~l 152 (189)
..+|+++.+.|.+.....++.+++....+++.+|++.|+++.++.++.+++........ .. .+.+.++..-++
T Consensus 281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l 360 (468)
T TIGR00788 281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII 360 (468)
T ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence 56899999999999999999999999999999999999999999999888775543111 00 113345566778
Q ss_pred HhhccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 153 VGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 153 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
.+++.+..+.....++++..|++.+|+..++..+.
T Consensus 361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~ 395 (468)
T TIGR00788 361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASI 395 (468)
T ss_pred HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHH
Confidence 88888888888899999999999999999987654
No 218
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=97.74 E-value=0.0013 Score=54.44 Aligned_cols=99 Identities=11% Similarity=0.033 Sum_probs=76.6
Q ss_pred chhHHHHHHHHHHHHhhhhhhhhhhhhCCc-h------hHHHHHHHHHHHHHHHHHHhh----c--hhhHHHHHHHHHHh
Q psy3312 88 TQGLILSSFFWGYVLNHIPGALIAERYGGK-Y------VLGFGLLVSTLATLATPLAAR----S--FGAVGILCARFIVG 154 (189)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r-~------~l~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~r~l~G 154 (189)
..+|.++...+..++..|+.+++-.|.++| + =+.+|+++.+++.+++.+... . -+.++++...++++
T Consensus 309 p~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t 388 (493)
T PRK15462 309 PTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMG 388 (493)
T ss_pred CHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHH
Confidence 467778888888888888888887776332 1 156777777777766644321 1 13677888999999
Q ss_pred hccccchhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312 155 LGQGPAYPSMNVILAQWVPKTERGRMGALVFA 186 (189)
Q Consensus 155 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 186 (189)
+|+-+..|...+++++..|++.|++.+|+++.
T Consensus 389 ~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l 420 (493)
T PRK15462 389 FAELFIDPVAMSQITRIEIPGVTGVLTGIYML 420 (493)
T ss_pred HHHHHHChHHHHHHHHhChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999865
No 219
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=97.73 E-value=6.3e-06 Score=68.76 Aligned_cols=108 Identities=20% Similarity=0.225 Sum_probs=3.0
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHh-----------h---------
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAA-----------R--------- 139 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-----------~--------- 139 (189)
++|+++.++.|++.+.+-++..+..++..++.+|..|-|.+..|.++.+++.+++++-+ .
T Consensus 31 rRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~ 110 (539)
T PF03137_consen 31 RRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSIS 110 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccc
Confidence 89999999999999999999999999999999999998999999999999988776421 0
Q ss_pred ---------------------------chhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 140 ---------------------------SFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 140 ---------------------------~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
...++.++++.++.|+|....++...+++-|..+++.-+..+|+.++.
T Consensus 111 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~ 185 (539)
T PF03137_consen 111 SNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAM 185 (539)
T ss_dssp -----------------------------------------SSS-------------------------------
T ss_pred cccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHH
Confidence 001356778999999999999999999999999999988888887654
No 220
>PRK11462 putative transporter; Provisional
Probab=97.67 E-value=0.00038 Score=57.15 Aligned_cols=108 Identities=12% Similarity=-0.040 Sum_probs=81.8
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhh----hCCch-hHHHHHHHHHHHHHHHHHHhhch---hhHHHHHHHH
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAER----YGGKY-VLGFGLLVSTLATLATPLAARSF---GAVGILCARF 151 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~g~r~-~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~r~ 151 (189)
+..|+++..+|.+..+.-+--++.-|+.|.++|| +|||| .++++.+..++...++...++.+ ...++.+..+
T Consensus 38 ~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~ 117 (460)
T PRK11462 38 DIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYT 117 (460)
T ss_pred HhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHH
Confidence 7789999999999999999999999999999995 68764 55566666666665554444321 1345666667
Q ss_pred HHhhccccchhHHHHHHHhhcC-ccchhhHHHHHhhc
Q psy3312 152 IVGLGQGPAYPSMNVILAQWVP-KTERGRMGALVFAG 187 (189)
Q Consensus 152 l~G~~~g~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~ 187 (189)
+..++.......-.++.+|..+ ++||.+..++...+
T Consensus 118 ~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~ 154 (460)
T PRK11462 118 LLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVL 154 (460)
T ss_pred HHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 7777777777778888899887 68999988876543
No 221
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=97.61 E-value=2.7e-07 Score=74.97 Aligned_cols=92 Identities=16% Similarity=0.125 Sum_probs=59.3
Q ss_pred HHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHH--H--Hhhch---hhHHHHHHHHHHhhccc-cchhHHHH
Q psy3312 95 SFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATP--L--AARSF---GAVGILCARFIVGLGQG-PAYPSMNV 166 (189)
Q Consensus 95 ~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~--~--~~~~~---~~~~~~~~r~l~G~~~g-~~~~~~~~ 166 (189)
...+...++.++...+.||+|||++++.+.+..+++.+... . ..+.. +... ++.-.+...+.+ +..+....
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~l~~~~~~~g~~~~~~~ 372 (451)
T PF00083_consen 294 ILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILS-IVFLALFFAFFSLGWGPLPWI 372 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ceeeeeccccccccccccccc
Confidence 34455566777778999999999999999888887776654 1 11110 0111 222222222222 23355567
Q ss_pred HHHhhcCccchhhHHHHHhhc
Q psy3312 167 ILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 167 ~~~~~~~~~~r~~~~~~~~~~ 187 (189)
+.+|.+|.+.|+++.++....
T Consensus 373 ~~~ElfPt~~R~~~~~~~~~~ 393 (451)
T PF00083_consen 373 YTAELFPTKVRSTGIGLSYAV 393 (451)
T ss_pred ccccccccccccccccccccc
Confidence 889999999999999887654
No 222
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=97.61 E-value=0.002 Score=53.19 Aligned_cols=89 Identities=17% Similarity=-0.108 Sum_probs=66.0
Q ss_pred chhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHH-HHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHH
Q psy3312 88 TQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGF-GLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNV 166 (189)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~ 166 (189)
..++..++..+..++..|+.|.++|+-|+||.++. ..++..+.+.++.+... +.++...+..++.-++.+.......+
T Consensus 71 ~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~-~~~~~~~~l~iia~v~~~~~~vfyna 149 (477)
T PF11700_consen 71 LWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSP-GQWWLALVLFIIANVGYEASNVFYNA 149 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCc-chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667788889999999999999999987765554 44455556666666532 22555566666666777778888999
Q ss_pred HHHhhcCccch
Q psy3312 167 ILAQWVPKTER 177 (189)
Q Consensus 167 ~~~~~~~~~~r 177 (189)
++.+..+++.+
T Consensus 150 ~LP~la~~~~~ 160 (477)
T PF11700_consen 150 YLPDLARPEPR 160 (477)
T ss_pred HhHhhcCCChh
Confidence 99999998888
No 223
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=97.59 E-value=0.0008 Score=54.99 Aligned_cols=108 Identities=13% Similarity=0.071 Sum_probs=88.0
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhh----hCCc-hhHHHHHHHHHHHHHHHHHHhhc---hhhHHHHHHHH
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAER----YGGK-YVLGFGLLVSTLATLATPLAARS---FGAVGILCARF 151 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~g~r-~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~r~ 151 (189)
+..|+++..+|.+..+.-+.-++.-|+.|.+.|| +||+ +-++.+.+-.++...++-..++. +...+.++...
T Consensus 41 dv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~ 120 (467)
T COG2211 41 DVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYM 120 (467)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHH
Confidence 7899999999999999999999999999999995 6764 56777778888877777777642 23677788889
Q ss_pred HHhhccccchhHHHHHHHhhcC-ccchhhHHHHHhhc
Q psy3312 152 IVGLGQGPAYPSMNVILAQWVP-KTERGRMGALVFAG 187 (189)
Q Consensus 152 l~G~~~g~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~ 187 (189)
+.+++.........++.+|.-+ ++||.+..++-+.+
T Consensus 121 l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~ 157 (467)
T COG2211 121 LLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVF 157 (467)
T ss_pred HHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHH
Confidence 9999998888888888888875 58999888776543
No 224
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=97.59 E-value=0.0004 Score=59.40 Aligned_cols=107 Identities=17% Similarity=0.247 Sum_probs=82.8
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhh-CCchhHHHHHHHHHHHHHHHHHHhhc-----hhhHHHHHHHHHH
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERY-GGKYVLGFGLLVSTLATLATPLAARS-----FGAVGILCARFIV 153 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~r~l~ 153 (189)
+.+|++.+.+..+...+....-+..++.|+++|++ |+++.+..+.++..++..+.++.... ......+++..+.
T Consensus 16 ~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLi 95 (654)
T TIGR00926 16 NFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALI 95 (654)
T ss_pred HHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHH
Confidence 56788888888888888888889999999999955 99999999999999988877764221 0023356777888
Q ss_pred hhccccchhHHHHHHHhhcCccc---hhhHHHHHhh
Q psy3312 154 GLGQGPAYPSMNVILAQWVPKTE---RGRMGALVFA 186 (189)
Q Consensus 154 G~~~g~~~~~~~~~~~~~~~~~~---r~~~~~~~~~ 186 (189)
.+|.|+.-+...+...|.+++++ |..++.+++.
T Consensus 96 a~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~ 131 (654)
T TIGR00926 96 ALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYF 131 (654)
T ss_pred HhhccccccCchhhhHhhcCccchhHHHHHHHHHHH
Confidence 88999999999999999997654 4455555543
No 225
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=97.55 E-value=0.00054 Score=55.25 Aligned_cols=44 Identities=18% Similarity=0.034 Sum_probs=36.3
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHH
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFG 123 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~ 123 (189)
++.|++.++.|.+.++..+...+.+|+.|.++||+|.||-++..
T Consensus 36 ~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~ 79 (412)
T PF01306_consen 36 QVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWF 79 (412)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHH
Confidence 56899999999999999999999999999999999977755443
No 226
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=97.54 E-value=0.00058 Score=54.56 Aligned_cols=106 Identities=18% Similarity=0.147 Sum_probs=76.4
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhC-----Cch-hHHHHHHHHHHHHHHHHHHh----h-------chh
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYG-----GKY-VLGFGLLVSTLATLATPLAA----R-------SFG 142 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g-----~r~-~l~~~~~~~~~~~~~~~~~~----~-------~~~ 142 (189)
.|++++....+.+.+...+. ....+.+|..+|+.+ ||. -+..|.++.+.+..+.+++. + ...
T Consensus 8 vEL~vpA~lv~~lval~~~~-ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~ 86 (403)
T PF03209_consen 8 VELGVPAWLVALLVALHYLV-APLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFW 86 (403)
T ss_pred HHhccHHHHHHHHHHHHHHH-HHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccH
Confidence 67888877777777766653 446999999999998 764 45556666665555444332 1 010
Q ss_pred h--HHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312 143 A--VGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFA 186 (189)
Q Consensus 143 ~--~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 186 (189)
. ........+.|+|.+.......++++|..|+++|++..++...
T Consensus 87 ~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~ 132 (403)
T PF03209_consen 87 LGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWV 132 (403)
T ss_pred HHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHH
Confidence 1 2334566778999998899999999999999999999998764
No 227
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=97.50 E-value=0.0018 Score=54.72 Aligned_cols=98 Identities=20% Similarity=0.178 Sum_probs=70.3
Q ss_pred chhHHHHHHHHHHHHhhhhhhhhhhhhCC-chhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHH
Q psy3312 88 TQGLILSSFFWGYVLNHIPGALIAERYGG-KYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNV 166 (189)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~-r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~ 166 (189)
..++....+.++..++..+.|.+..+.+| |..++++.++..++..+++...... ....+..-++.|++.|........
T Consensus 350 ~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n-~~~~i~~~~l~g~giG~~~~~~~~ 428 (599)
T PF06609_consen 350 EIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDN-KNAAIAFLVLAGFGIGGILVPAIV 428 (599)
T ss_pred eeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCC-cchHHHHHHHHHHhHHHHHHHHHH
Confidence 56788788888999999999999998887 4455566666655444444332211 334457778889998888777777
Q ss_pred HHHhhcCccchhhHHHHHhh
Q psy3312 167 ILAQWVPKTERGRMGALVFA 186 (189)
Q Consensus 167 ~~~~~~~~~~r~~~~~~~~~ 186 (189)
...-..|+++-+.+.++..+
T Consensus 429 ~~ql~~p~~~ig~a~gL~~s 448 (599)
T PF06609_consen 429 IAQLIVPDEDIGTATGLTGS 448 (599)
T ss_pred eeEeeeCchHHHHHHHHHHH
Confidence 77777888888888877543
No 228
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=97.49 E-value=0.0028 Score=51.24 Aligned_cols=105 Identities=7% Similarity=-0.017 Sum_probs=60.8
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHh--hchhhHHHHHHHHHHhhcc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAA--RSFGAVGILCARFIVGLGQ 157 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~r~l~G~~~ 157 (189)
+.+|.++.+.++.......+..++..+.+.+.++..+++.+.....+..++..+..... ..+.++..++..++.++|.
T Consensus 247 ~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G~ 326 (413)
T PRK15403 247 DAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYAFGI 326 (413)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHH
Confidence 56788999999988778888888888888876555444443332222222222222110 1111334567777888888
Q ss_pred ccchhHHHHHHHhhcC-ccchhhHHHHHhh
Q psy3312 158 GPAYPSMNVILAQWVP-KTERGRMGALVFA 186 (189)
Q Consensus 158 g~~~~~~~~~~~~~~~-~~~r~~~~~~~~~ 186 (189)
+...+...... +.+ ...+|++.++...
T Consensus 327 ~~~~p~~~~~a--l~~~~~~~G~a~a~~~~ 354 (413)
T PRK15403 327 GLIFPTLFRFT--LFSNNLPKGTVSASLNM 354 (413)
T ss_pred HHHhHHHHHHH--hccCCCCCcHHHHHHHH
Confidence 87777666432 222 2246777665543
No 229
>KOG2533|consensus
Probab=97.49 E-value=0.00041 Score=57.36 Aligned_cols=124 Identities=11% Similarity=0.042 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCccccccccccccee-eeccccchhHHHHHHHHHHHHhhhh
Q psy3312 28 LLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYE-FDWDERTQGLILSSFFWGYVLNHIP 106 (189)
Q Consensus 28 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (189)
....++.+........+....|.+. ++ .|++..+.+.+...+.++.+++.++
T Consensus 276 w~~~l~~~~~~lv~~~~~~~lpl~l---------------------------~~~~~~s~~~a~~ls~~~~~~g~v~~i~ 328 (495)
T KOG2533|consen 276 WPFSLCYFFLKLVNYGFSYWLPLYL---------------------------KSNGGYSELQANLLSTPYDVGGIVGLIL 328 (495)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHH---------------------------HcCCCcChHHhccccchHHhhhHHHHHH
Confidence 3455666666666666777778777 34 5688889999999999999999999
Q ss_pred hhhhhhh----hCCchhHHHHHHHHHHHH-HHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHH
Q psy3312 107 GALIAER----YGGKYVLGFGLLVSTLAT-LATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMG 181 (189)
Q Consensus 107 ~g~l~dr----~g~r~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~ 181 (189)
+|.++|| ..+|........+..+.. ........ .+......+..+.+.....+......++...++.|....
T Consensus 329 ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~ 405 (495)
T KOG2533|consen 329 AGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAAV---LPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTT 405 (495)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc---chHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHH
Confidence 9999999 666666655555544433 33333322 222222223333444455566666666666665554433
No 230
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=97.41 E-value=0.0048 Score=50.95 Aligned_cols=97 Identities=13% Similarity=0.051 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhCC-chhHHHHHHHHHHHHHHHHHHhhchh------------------hHHHHHHHH
Q psy3312 91 LILSSFFWGYVLNHIPGALIAERYGG-KYVLGFGLLVSTLATLATPLAARSFG------------------AVGILCARF 151 (189)
Q Consensus 91 ~~~~~~~~~~~~~~~~~g~l~dr~g~-r~~l~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~r~ 151 (189)
+....+.+...+.+++..++++|+|+ |++..++.++.+++.+...+..+..+ .+..++...
T Consensus 309 ~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 388 (477)
T TIGR01301 309 FGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFA 388 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHH
Confidence 33344555556777788899999995 67768887887777776665543110 256677888
Q ss_pred HHhhccccchhHHHHHHHhhcCcc--chhhHHHHHhhc
Q psy3312 152 IVGLGQGPAYPSMNVILAQWVPKT--ERGRMGALVFAG 187 (189)
Q Consensus 152 l~G~~~g~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~ 187 (189)
+.|+..+..+..-++++++..+++ ..|..+|+.+.+
T Consensus 389 ~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~ 426 (477)
T TIGR01301 389 ILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLA 426 (477)
T ss_pred HhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHH
Confidence 899999999999999999999854 458999998765
No 231
>KOG3764|consensus
Probab=97.41 E-value=0.00016 Score=57.49 Aligned_cols=92 Identities=18% Similarity=0.141 Sum_probs=70.9
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhC--CchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYG--GKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQ 157 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g--~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~ 157 (189)
+.+..+..+.|+..--..+.+.++..+.|.++||++ |-.....++++........+++++ +..+++-++..|++.
T Consensus 299 e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~---~~~L~vp~~~l~~~i 375 (464)
T KOG3764|consen 299 ETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATS---IAQLWVPNFGLGFGI 375 (464)
T ss_pred HhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhh---HHHHhhhhHHHHHHH
Confidence 445545557788777888899999999999999999 655666677777777777788888 778888888888888
Q ss_pred ccchhHHHHHHHhhcCc
Q psy3312 158 GPAYPSMNVILAQWVPK 174 (189)
Q Consensus 158 g~~~~~~~~~~~~~~~~ 174 (189)
+.........+.+...+
T Consensus 376 ~~~dasl~P~l~~lvd~ 392 (464)
T KOG3764|consen 376 GLADASLIPTLGYLVDP 392 (464)
T ss_pred HHHHHHHhhhhHHhcch
Confidence 77777766666666644
No 232
>KOG2816|consensus
Probab=97.27 E-value=0.0037 Score=51.44 Aligned_cols=84 Identities=19% Similarity=0.160 Sum_probs=65.0
Q ss_pred HHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhc--cccchhHHHHHHHhhc
Q psy3312 95 SFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLG--QGPAYPSMNVILAQWV 172 (189)
Q Consensus 95 ~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~--~g~~~~~~~~~~~~~~ 172 (189)
...+...+.++..|.++||+|||..+....+...+..+...+.. +|.++ +.++. .+..+....+++++..
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~----~~~~~----~~~l~g~~~~~~s~~~a~vadis 141 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG----YWFFL----LLGLSGGFSAIFSVGFAYVADIS 141 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH----HHHhh----hcccccchhhhhhhhhhheeecc
Confidence 44677888999999999999999999999888887777665543 33333 44443 3455778888999999
Q ss_pred CccchhhHHHHHhh
Q psy3312 173 PKTERGRMGALVFA 186 (189)
Q Consensus 173 ~~~~r~~~~~~~~~ 186 (189)
..++|....|+.+.
T Consensus 142 ~~~~R~~~~gll~~ 155 (463)
T KOG2816|consen 142 SEEERSSSIGLLSG 155 (463)
T ss_pred chhHHHHHHHHHHH
Confidence 99999999988765
No 233
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=97.18 E-value=0.0019 Score=51.91 Aligned_cols=99 Identities=14% Similarity=0.020 Sum_probs=73.8
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHH-HHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHH
Q psy3312 87 RTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLG-FGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMN 165 (189)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~ 165 (189)
+..+...++..+..++..|+.|.++|+.|+||..+ ....+..++..+..++++...++..++..++..++.........
T Consensus 58 a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyd 137 (438)
T COG2270 58 AYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYD 137 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehh
Confidence 34566778888889999999999999999776544 44555555566667776633256667777888888888888899
Q ss_pred HHHHhhcCccchhhHHHHHh
Q psy3312 166 VILAQWVPKTERGRMGALVF 185 (189)
Q Consensus 166 ~~~~~~~~~~~r~~~~~~~~ 185 (189)
+++.+..++++-++..++..
T Consensus 138 s~L~~~~~k~~~~riS~lg~ 157 (438)
T COG2270 138 SMLPRLTTKDNMGRISGLGW 157 (438)
T ss_pred hHhhhhcCccccCccccccc
Confidence 99999998877666655443
No 234
>KOG2816|consensus
Probab=97.15 E-value=0.0034 Score=51.64 Aligned_cols=103 Identities=20% Similarity=0.345 Sum_probs=87.8
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhh-hhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGA-LIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQG 158 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g 158 (189)
..++++..+.+.+.+.......+++.+.. .+...+|-|+++..|+..-.+...+.+++++ .|.+.....+.++ .+
T Consensus 270 ~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~---~w~~~~~~v~~~~-~~ 345 (463)
T KOG2816|consen 270 AKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATE---TWMMFAAGVVVAL-AG 345 (463)
T ss_pred eecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhcc---chhhhHHHHHHHh-hc
Confidence 67899999999888888877777777766 7888889999999999999999999999988 7787777766655 45
Q ss_pred cchhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312 159 PAYPSMNVILAQWVPKTERGRMGALVFA 186 (189)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 186 (189)
...++..++++.+.+++++|+..++...
T Consensus 346 ~~~pa~~s~~s~~v~~~e~g~v~~~is~ 373 (463)
T KOG2816|consen 346 IVFPAIRAFASILVSPEEQGKVFGIISG 373 (463)
T ss_pred chhHHHHhHHHhhcccccccchhhHHHH
Confidence 6789999999999999999999988754
No 235
>KOG0637|consensus
Probab=97.06 E-value=0.0027 Score=51.52 Aligned_cols=133 Identities=11% Similarity=0.058 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHh
Q psy3312 24 YLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLN 103 (189)
Q Consensus 24 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (189)
..++.+..+.....+......++..|+. .+.|++....+.+-...-+...+-
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl----------------------------~~lGvphk~~S~iw~~gPi~G~~v 83 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYL----------------------------QSLGVPHKWSSIIWLCGPLSGLLV 83 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHH----------------------------HHcCCCccccccccccccccccee
Confidence 3444445555555555555566666666 478888877777777777778889
Q ss_pred hhhhhhhhh----hhCCchh-HHHHHHHHHHHHHHHHHHhhch--------------hhHHHHHHHHHHhhccccchhHH
Q psy3312 104 HIPGALIAE----RYGGKYV-LGFGLLVSTLATLATPLAARSF--------------GAVGILCARFIVGLGQGPAYPSM 164 (189)
Q Consensus 104 ~~~~g~l~d----r~g~r~~-l~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~r~l~G~~~g~~~~~~ 164 (189)
+|+.|..+| ||||||. +..+.++.+++.++..++.+.+ ....++++..+.=+..-..+..+
T Consensus 84 QP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ 163 (498)
T KOG0637|consen 84 QPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPC 163 (498)
T ss_pred cccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhH
Confidence 999999999 5788765 4455666667777777766532 01223334444445555677888
Q ss_pred HHHHHhhcCccchhh-HHHHH
Q psy3312 165 NVILAQWVPKTERGR-MGALV 184 (189)
Q Consensus 165 ~~~~~~~~~~~~r~~-~~~~~ 184 (189)
-+++.|.+..+++.+ +.+++
T Consensus 164 ra~L~Dl~~~d~~~~~Ans~f 184 (498)
T KOG0637|consen 164 RALLADLARGDAKKTRANSVF 184 (498)
T ss_pred HHHHHHhccChhhhhccchhH
Confidence 999999998776666 55554
No 236
>KOG2615|consensus
Probab=96.92 E-value=0.014 Score=46.64 Aligned_cols=105 Identities=21% Similarity=0.256 Sum_probs=85.2
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhC--CchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYG--GKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQ 157 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g--~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~ 157 (189)
+.+|.++.+.|-+.+...++..+.+....+..||.. -+..+..++.+..-..++...++. ...+.++-.+-.+..
T Consensus 290 ~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~---~~~l~~~s~l~sf~~ 366 (451)
T KOG2615|consen 290 GRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLART---PVVLYLGSTLKSFST 366 (451)
T ss_pred CccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhcccc---chhhhHHHHHHHHHH
Confidence 789999999999999999999999999999999887 666677776666655666666666 556677777777777
Q ss_pred ccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 158 GPAYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 158 g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
+...+....++....|.++||...|+..+.
T Consensus 367 A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl 396 (451)
T KOG2615|consen 367 ASVVTCLTSLVHKYGPQSQRGTLNGIFRSL 396 (451)
T ss_pred HHhhHHHHHHHHhcCCcccchHHHHHHHHH
Confidence 777788888999999999999999998653
No 237
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=96.92 E-value=0.034 Score=45.73 Aligned_cols=100 Identities=15% Similarity=0.098 Sum_probs=76.3
Q ss_pred chhHHHHHHHHHHHHhhhhhhhhhhhhCCc-------hhHHHHHHHHHHHHHHHHHH-------hhchhhHHHHHHHHHH
Q psy3312 88 TQGLILSSFFWGYVLNHIPGALIAERYGGK-------YVLGFGLLVSTLATLATPLA-------ARSFGAVGILCARFIV 153 (189)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r-------~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~r~l~ 153 (189)
...+.++...+..++..++..++--+.+++ .-+.+++++.+.+.++.... .+..+.++++...+++
T Consensus 325 p~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~ 404 (498)
T COG3104 325 PPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQ 404 (498)
T ss_pred CHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHH
Confidence 356778888888888888888888885544 12445566665555555444 1222478889999999
Q ss_pred hhccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 154 GLGQGPAYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 154 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
++|+=+..|....++.+..|++-.+.+++.+.+.
T Consensus 405 s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt 438 (498)
T COG3104 405 SFGELFISPVGLSMVTKLAPPALKSFIMAMWFLT 438 (498)
T ss_pred HHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998753
No 238
>KOG2532|consensus
Probab=96.89 E-value=0.021 Score=47.18 Aligned_cols=60 Identities=10% Similarity=0.135 Sum_probs=46.1
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCc---------hhHHHHHHHHHHHHHHHHHHhh
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGK---------YVLGFGLLVSTLATLATPLAAR 139 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r---------~~l~~~~~~~~~~~~~~~~~~~ 139 (189)
+.+|++..+.|++.++..+...+..+++|.++||.-+| ..=.++....++..+..++.++
T Consensus 287 ~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~ 355 (466)
T KOG2532|consen 287 EVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSD 355 (466)
T ss_pred HHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCC
Confidence 78999999999999999999999999999999988652 2233445555555555566554
No 239
>KOG0255|consensus
Probab=96.84 E-value=0.042 Score=45.82 Aligned_cols=89 Identities=13% Similarity=0.116 Sum_probs=68.6
Q ss_pred HHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccch
Q psy3312 98 WGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTER 177 (189)
Q Consensus 98 ~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r 177 (189)
.....+....+.+.|++|||..+..+.++..++.++..+.......+...+...+..++.+..+.....+.+|.+|...|
T Consensus 361 ~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r 440 (521)
T KOG0255|consen 361 LVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVR 440 (521)
T ss_pred HHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHH
Confidence 34555556668999999999999999999999999888887643112345555555566666777779999999999999
Q ss_pred hhHHHHHhh
Q psy3312 178 GRMGALVFA 186 (189)
Q Consensus 178 ~~~~~~~~~ 186 (189)
..+.+....
T Consensus 441 ~~~~~~~~~ 449 (521)
T KOG0255|consen 441 NTAVGAISA 449 (521)
T ss_pred HHHHHHHHH
Confidence 999887654
No 240
>KOG4332|consensus
Probab=96.82 E-value=0.00025 Score=53.88 Aligned_cols=89 Identities=12% Similarity=0.161 Sum_probs=68.3
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP 159 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (189)
..+++...+++.+.....-..++...+.|.++||-|||+.-..-++.+.++++ ...+++ +-.++++|.+.|+..+.
T Consensus 65 stYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpq---YkVLmVGR~LGGiaTsL 140 (454)
T KOG4332|consen 65 STYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQ---YKVLMVGRVLGGIATSL 140 (454)
T ss_pred hhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCc---eEEEeehhhhhhHHHHH
Confidence 55777788888887777777788888899999999999976666666655554 344555 77899999999999888
Q ss_pred chhHHHH-HHHhhc
Q psy3312 160 AYPSMNV-ILAQWV 172 (189)
Q Consensus 160 ~~~~~~~-~~~~~~ 172 (189)
.+.+--. +++|.-
T Consensus 141 LFSaFEsWliaEHn 154 (454)
T KOG4332|consen 141 LFSAFESWLIAEHN 154 (454)
T ss_pred HHHHHHHHHHHHhh
Confidence 8776665 455554
No 241
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=96.80 E-value=0.033 Score=45.49 Aligned_cols=107 Identities=15% Similarity=0.042 Sum_probs=72.9
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHH---HHhhc----hhhHHHHHHHHH
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATP---LAARS----FGAVGILCARFI 152 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~r~l 152 (189)
..-|+++...+..-+...+..+.+++...++.+|+|..|.=.++......+..+.. +.+.. .+...++.+-++
T Consensus 286 ~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~ 365 (432)
T PF06963_consen 286 KSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIAL 365 (432)
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHH
Confidence 34489999999999999999999999999999999998876666654443333222 11111 012233333333
Q ss_pred HhhccccchhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312 153 VGLGQGPAYPSMNVILAQWVPKTERGRMGALVFA 186 (189)
Q Consensus 153 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 186 (189)
.=+|.=+..-...-++.|..|+++||...|+-++
T Consensus 366 SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~s 399 (432)
T PF06963_consen 366 SRIGLWSFDLAVTQIMQENVPESERGAVSGVQNS 399 (432)
T ss_pred HHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHH
Confidence 3333334445667789999999999999887654
No 242
>PTZ00207 hypothetical protein; Provisional
Probab=96.63 E-value=0.012 Score=49.88 Aligned_cols=91 Identities=10% Similarity=0.074 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHhhhhhhhhhh---hhC------CchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchh
Q psy3312 92 ILSSFFWGYVLNHIPGALIAE---RYG------GKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYP 162 (189)
Q Consensus 92 ~~~~~~~~~~~~~~~~g~l~d---r~g------~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~ 162 (189)
+.+...++..+|.+..|.+.. |.. |--.+.+..+ ..++.+++.+... ...+.+.-++.|++.|..++
T Consensus 396 ~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p---~~~L~~~~~lvg~~~G~~~~ 471 (591)
T PTZ00207 396 LTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLP---KAALPLPYFIAAFANGFMAA 471 (591)
T ss_pred ehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCC---ccHhHHHHHHHHHHhhHhHH
Confidence 567777788888888887772 111 1122333333 4444554444432 24788999999999999999
Q ss_pred HHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 163 SMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 163 ~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
....+++|+|. |+-|+-..+...+
T Consensus 472 ~~~~i~selFg-k~~g~~yN~~~~a 495 (591)
T PTZ00207 472 TIALVTRTIFA-KDPAKHYNFCFLG 495 (591)
T ss_pred HHHHHHHHHhc-cchHHHhhHHhHH
Confidence 99999999999 8888777665543
No 243
>KOG0252|consensus
Probab=96.63 E-value=0.0013 Score=53.36 Aligned_cols=87 Identities=15% Similarity=0.133 Sum_probs=60.8
Q ss_pred HHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhch-h---h-HHHHHHHHHHhhccccchhHHHHHHHhhc
Q psy3312 98 WGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSF-G---A-VGILCARFIVGLGQGPAYPSMNVILAQWV 172 (189)
Q Consensus 98 ~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~-~---~-~~~~~~r~l~G~~~g~~~~~~~~~~~~~~ 172 (189)
.+++.+..+...+.|+.|||++.+.+.++..+..+..+...++. . + ....+..++.-+| .......+-+|.|
T Consensus 359 ~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFG---Pn~ttfivpaE~F 435 (538)
T KOG0252|consen 359 CSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFG---PNATTFIVPAEIF 435 (538)
T ss_pred HccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcC---CCceeEEeehhhc
Confidence 34455777888999999999999999999998888777665521 1 1 1222233333343 3344556779999
Q ss_pred CccchhhHHHHHhhc
Q psy3312 173 PKTERGRMGALVFAG 187 (189)
Q Consensus 173 ~~~~r~~~~~~~~~~ 187 (189)
|.+.|++..|+.-+.
T Consensus 436 ParvR~t~hGIsAA~ 450 (538)
T KOG0252|consen 436 PARVRSTCHGISAAS 450 (538)
T ss_pred hHHHhhhhhhHHHHh
Confidence 999999999987543
No 244
>KOG3626|consensus
Probab=96.60 E-value=0.0031 Score=54.16 Aligned_cols=108 Identities=19% Similarity=0.232 Sum_probs=93.5
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHh-----------h---------
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAA-----------R--------- 139 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-----------~--------- 139 (189)
+.++++.++.|++.+.+=++..+...+..+...|.-|.+.+..|+++.+++.+++++-+ .
T Consensus 125 rRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~ 204 (735)
T KOG3626|consen 125 RRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPS 204 (735)
T ss_pred hhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCc
Confidence 88999999999999999999999999999999999999999999999999998887531 0
Q ss_pred --------------------------ch---hhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 140 --------------------------SF---GAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 140 --------------------------~~---~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
.+ .+..++++.++.|+|....++...+++-|...+++-...+|+.+..
T Consensus 205 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~ 281 (735)
T KOG3626|consen 205 SSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSM 281 (735)
T ss_pred cccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHH
Confidence 00 1235678889999999999999999999999998888888887653
No 245
>KOG3762|consensus
Probab=96.56 E-value=0.0009 Score=55.26 Aligned_cols=60 Identities=18% Similarity=0.150 Sum_probs=50.1
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCc-hhHHHHHHHHHHHHHHHHHHhh
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGK-YVLGFGLLVSTLATLATPLAAR 139 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r-~~l~~~~~~~~~~~~~~~~~~~ 139 (189)
+.+|+++.+.+.+.+.--+..+++.|++|.++||+-+| +.++.+.+....+.++..+++.
T Consensus 39 kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~fv~P 99 (618)
T KOG3762|consen 39 KQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLVFVPP 99 (618)
T ss_pred HHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHheeeccC
Confidence 78999999999999999999999999999999999765 5566667777777777666553
No 246
>KOG3098|consensus
Probab=96.48 E-value=0.0078 Score=49.30 Aligned_cols=88 Identities=11% Similarity=0.121 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhc
Q psy3312 93 LSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWV 172 (189)
Q Consensus 93 ~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~ 172 (189)
.++.+..+.+..++.+.+.|+.|.|..+.++...+......+-+.. -+.+++.-.+.|+|.+..+.....+++|..
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N----~y~~yfssallG~Gaallw~GqG~ylt~~s 131 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPN----SYYLYFSSALLGFGAALLWTGQGGYLTSNS 131 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcc----hHHHHHHHHHhhhhHHheecccceehhhcC
Confidence 6777888999999999999999999999999999988887665544 457788999999999999999999999999
Q ss_pred CccchhhHHHHH
Q psy3312 173 PKTERGRMGALV 184 (189)
Q Consensus 173 ~~~~r~~~~~~~ 184 (189)
+++.+.+..++.
T Consensus 132 t~~tie~Nisi~ 143 (461)
T KOG3098|consen 132 TRETIERNISIF 143 (461)
T ss_pred ChhhHHHHHHHH
Confidence 998888877764
No 247
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=96.37 E-value=0.044 Score=44.33 Aligned_cols=101 Identities=14% Similarity=0.159 Sum_probs=78.7
Q ss_pred eeeccccchh-HHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312 81 EFDWDERTQG-LILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP 159 (189)
Q Consensus 81 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (189)
+.|++..+.. -+.-+....+....++...+.|..+.|++++++.+...+...++.+.++ .+.+-+..++.|++.+.
T Consensus 34 ~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~s---v~~mq~~q~~yg~~~a~ 110 (412)
T PF01770_consen 34 DKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTS---VLAMQLMQFFYGLATAA 110 (412)
T ss_pred ccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCc---HHHHHHHHHHHHHHHHH
Confidence 3677776654 3445666778888999999999999999999999998888888888877 88888999999998765
Q ss_pred chhHHHHHHHhhcCccchhhHHHHHh
Q psy3312 160 AYPSMNVILAQWVPKTERGRMGALVF 185 (189)
Q Consensus 160 ~~~~~~~~~~~~~~~~~r~~~~~~~~ 185 (189)
..+-.+++=...++++-.++.+...
T Consensus 111 -evay~sYiys~v~~~~yq~vts~~r 135 (412)
T PF01770_consen 111 -EVAYYSYIYSVVDKEHYQKVTSYTR 135 (412)
T ss_pred -HHHHHHHheeecCHHHHHHHHHHHH
Confidence 4556677777777777666665543
No 248
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=96.24 E-value=0.016 Score=49.65 Aligned_cols=53 Identities=17% Similarity=0.247 Sum_probs=41.6
Q ss_pred eeeeccccchhHHHHHHHH-HHHHhhhhhhhhhhhhCC--chhHHHHHHHHHHHHH
Q psy3312 80 YEFDWDERTQGLILSSFFW-GYVLNHIPGALIAERYGG--KYVLGFGLLVSTLATL 132 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~g~--r~~l~~~~~~~~~~~~ 132 (189)
+.+|+++.+++++.+...+ +.+++.++.|++.||+++ |+.+.+++++..++.+
T Consensus 359 ~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~ 414 (633)
T TIGR00805 359 NQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYL 414 (633)
T ss_pred HHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHH
Confidence 6799999999999887765 678999999999999984 4666666665555543
No 249
>KOG2563|consensus
Probab=96.10 E-value=0.011 Score=48.11 Aligned_cols=97 Identities=14% Similarity=0.040 Sum_probs=64.6
Q ss_pred eeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCC-chhHHHHHHHHHHHHHHHHHH-hhchhhHHHHHHHHHHhhccc
Q psy3312 81 EFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGG-KYVLGFGLLVSTLATLATPLA-ARSFGAVGILCARFIVGLGQG 158 (189)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~-r~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~l~G~~~g 158 (189)
.-|.+....|+......++.++++...|.+.||... |.++.+......++.+..... ......+.+...-.+.|++..
T Consensus 295 ~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~ 374 (480)
T KOG2563|consen 295 PSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGT 374 (480)
T ss_pred cccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhc
Confidence 344455788999999999999999999999999965 556666666655554322222 222223455556667777777
Q ss_pred cchhHHHHHHHhh-cCccch
Q psy3312 159 PAYPSMNVILAQW-VPKTER 177 (189)
Q Consensus 159 ~~~~~~~~~~~~~-~~~~~r 177 (189)
+..|...-+-.|. +|..|+
T Consensus 375 ~~~Pig~ElgvE~TyPv~E~ 394 (480)
T KOG2563|consen 375 GYLPIGFELGVETTYPVAEG 394 (480)
T ss_pred CCCCcceeeeeeeccccCCc
Confidence 7788777666666 344443
No 250
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=95.72 E-value=0.3 Score=39.51 Aligned_cols=96 Identities=15% Similarity=0.082 Sum_probs=62.9
Q ss_pred cccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHH-----HHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312 85 DERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVS-----TLATLATPLAARSFGAVGILCARFIVGLGQGP 159 (189)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (189)
.+.++.+....+.+|-.++.--...+ |+ |++.+...+-. .+...+.-+.++ .|.+++.-+..|+..|.
T Consensus 279 ~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fips---i~ivf~lif~eGLlGGa 351 (402)
T PF02487_consen 279 PRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPS---IWIVFVLIFYEGLLGGA 351 (402)
T ss_pred HHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHhhhH
Confidence 34567777788887766654322221 22 33333332222 122223333444 77777888899999999
Q ss_pred chhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 160 AYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 160 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
.+......+.|-.|+++|...+|....+
T Consensus 352 ~YVNtF~~I~~~~~~~~REFslg~vsvs 379 (402)
T PF02487_consen 352 SYVNTFYRISEEVPPEDREFSLGAVSVS 379 (402)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999887654
No 251
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=95.56 E-value=0.088 Score=43.07 Aligned_cols=105 Identities=14% Similarity=0.165 Sum_probs=72.0
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhh-----CCchhHHHHHHHHHHHHHHHHHHhhc-hhhHHHHHHHHHH
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERY-----GGKYVLGFGLLVSTLATLATPLAARS-FGAVGILCARFIV 153 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~r~l~ 153 (189)
+++|+++++...+.+...+.. ...++.|.++|-+ .||+-++++.++.+++....+..+.. .+.....+..++.
T Consensus 18 ~~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la 96 (433)
T PF03092_consen 18 DDLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLA 96 (433)
T ss_pred HHcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHH
Confidence 889999998887766666544 4578889999977 35566677777776656555554431 1244555666777
Q ss_pred hhccccchhHHHHHHHhhcC--ccchhhHHHHHh
Q psy3312 154 GLGQGPAYPSMNVILAQWVP--KTERGRMGALVF 185 (189)
Q Consensus 154 G~~~g~~~~~~~~~~~~~~~--~~~r~~~~~~~~ 185 (189)
.+|........-+++.|... |++|+...+...
T Consensus 97 ~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~ 130 (433)
T PF03092_consen 97 SFGYAFADVAADALVVELARREPESRGDLQSFVW 130 (433)
T ss_pred HHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHH
Confidence 78888888888889999873 334666655543
No 252
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=94.85 E-value=0.88 Score=37.79 Aligned_cols=102 Identities=7% Similarity=-0.147 Sum_probs=66.3
Q ss_pred cchhHHHHHHHHHHHHh-hhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHh----hc-h-------------------
Q psy3312 87 RTQGLILSSFFWGYVLN-HIPGALIAERYGGKYVLGFGLLVSTLATLATPLAA----RS-F------------------- 141 (189)
Q Consensus 87 ~~~~~~~~~~~~~~~~~-~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~----~~-~------------------- 141 (189)
....++.+...+...+. .++.+++++|++|++++-.....+.....++++.- +. +
T Consensus 43 e~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~ 122 (472)
T TIGR00769 43 EIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGF 122 (472)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHH
Confidence 46778877776666555 89999999999999988877666666665555441 10 0
Q ss_pred ----hhHHHHHHHHHHhhccccchh-HHHHHHHhhcCccchhhHHHHHhhcC
Q psy3312 142 ----GAVGILCARFIVGLGQGPAYP-SMNVILAQWVPKTERGRMGALVFAGS 188 (189)
Q Consensus 142 ----~~~~~~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~ 188 (189)
..|...+..+..-+-.....+ .-..+..|.+.+++-.|..++...++
T Consensus 123 i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ga 174 (472)
T TIGR00769 123 IAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGA 174 (472)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 012222222223332233333 66778999999998889888887764
No 253
>KOG1330|consensus
Probab=94.28 E-value=0.13 Score=42.17 Aligned_cols=101 Identities=17% Similarity=0.106 Sum_probs=56.4
Q ss_pred ccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCc----hhHHHH---HHHH----HHHHHHHHHHhhchhhHHHHHHHHH
Q psy3312 84 WDERTQGLILSSFFWGYVLNHIPGALIAERYGGK----YVLGFG---LLVS----TLATLATPLAARSFGAVGILCARFI 152 (189)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r----~~l~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~~r~l 152 (189)
.+..+..++..+...+..+|.++.|.++||+-|+ ...... +.+. ....++.+...+ + ...+....++
T Consensus 280 ~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~-~-s~~~~~il~~ 357 (493)
T KOG1330|consen 280 FDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTS-S-SMIFGLILFL 357 (493)
T ss_pred CccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhh-H-HHHHHHHHHH
Confidence 3444455566788889999999999999994321 112211 1111 111111111122 1 2222333344
Q ss_pred Hhhccc-cchhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312 153 VGLGQG-PAYPSMNVILAQWVPKTERGRMGALVFA 186 (189)
Q Consensus 153 ~G~~~g-~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 186 (189)
.|.... ..++....+..|..||++|..+.++-..
T Consensus 358 ~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~ 392 (493)
T KOG1330|consen 358 VGETISWFNWATNNPIFLEVVPPSRRTTAYALDTV 392 (493)
T ss_pred HHHHHHhcccccccceeeEecCcccccHHHHHHHH
Confidence 454333 3355666688999999999999887653
No 254
>KOG3098|consensus
Probab=94.08 E-value=1.6 Score=36.08 Aligned_cols=89 Identities=18% Similarity=0.231 Sum_probs=63.4
Q ss_pred HHHHHHHHhhhhhhhhh---hhhCCchhHHHHHHHHHHHHHHHHHHhhch---------------hhHHHHHHHHHHhhc
Q psy3312 95 SFFWGYVLNHIPGALIA---ERYGGKYVLGFGLLVSTLATLATPLAARSF---------------GAVGILCARFIVGLG 156 (189)
Q Consensus 95 ~~~~~~~~~~~~~g~l~---dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~r~l~G~~ 156 (189)
...++..++..+.+.+. +++||++++.++.++..+..++.-+..... .....++.-++.|++
T Consensus 287 ~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~ 366 (461)
T KOG3098|consen 287 GIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFG 366 (461)
T ss_pred HHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhH
Confidence 34455555556666666 467899999998888887777654432111 134667777899999
Q ss_pred cccchhHHHHHHHhhcCccchhhHHHHH
Q psy3312 157 QGPAYPSMNVILAQWVPKTERGRMGALV 184 (189)
Q Consensus 157 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~ 184 (189)
.+........+++... +++|..+.+++
T Consensus 367 D~~~~t~~~~ii~~~~-~~~~~~~fsi~ 393 (461)
T KOG3098|consen 367 DACFNTQRYVIIALLY-PDDRAQAFSLF 393 (461)
T ss_pred HHHHHHHHHHHHHHHh-cCchHHHHHHH
Confidence 9999999999999999 67777766654
No 255
>PRK03612 spermidine synthase; Provisional
Probab=93.78 E-value=3.6 Score=34.67 Aligned_cols=91 Identities=12% Similarity=0.048 Sum_probs=48.2
Q ss_pred eeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHH-HHHHHH-HHHHHHHHHhhc-hhh-HHHHHHHHHHhhcc
Q psy3312 82 FDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGF-GLLVST-LATLATPLAARS-FGA-VGILCARFIVGLGQ 157 (189)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~-~~~~~~-~~~~~~~~~~~~-~~~-~~~~~~r~l~G~~~ 157 (189)
+|-+....+.+.+++..|..+|..+.+++.++.-++....- +..+.+ ++..+....... ... ..+....++.++..
T Consensus 45 ~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~ 124 (521)
T PRK03612 45 LGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLI 124 (521)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555667888999999999999999888744333322111 111111 111111111110 001 12233445567778
Q ss_pred ccchhHHHHHHHhhc
Q psy3312 158 GPAYPSMNVILAQWV 172 (189)
Q Consensus 158 g~~~~~~~~~~~~~~ 172 (189)
|..+|....+..+..
T Consensus 125 G~~~Pl~~~~~~~~~ 139 (521)
T PRK03612 125 GMEIPLLMRILQRIR 139 (521)
T ss_pred HHHHHHHHHHHHhcc
Confidence 888887777766543
No 256
>KOG1237|consensus
Probab=92.80 E-value=1.4 Score=37.46 Aligned_cols=94 Identities=20% Similarity=0.256 Sum_probs=70.5
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhh-CCchhHHHHHHHHHHHHHHHHHHhhch-----------------
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERY-GGKYVLGFGLLVSTLATLATPLAARSF----------------- 141 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~----------------- 141 (189)
.+++.+...+.-....+.-..-...+..+.++|-| ||-+++.++.++..++..+..+.....
T Consensus 66 ~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~ 145 (571)
T KOG1237|consen 66 LELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCE 145 (571)
T ss_pred HHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCccc
Confidence 77777776666666677666777889999999966 899999999888888865554432110
Q ss_pred -----hhHHHHHHHHHHhhccccchhHHHHHHHhhcC
Q psy3312 142 -----GAVGILCARFIVGLGQGPAYPSMNVILAQWVP 173 (189)
Q Consensus 142 -----~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~ 173 (189)
....+.....+..+|.|+.-+....+-+|-++
T Consensus 146 ~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd 182 (571)
T KOG1237|consen 146 SPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFD 182 (571)
T ss_pred CcchHHHHHHHHHHHHheeccCCCCCcchhhcccccC
Confidence 12355667777788999999999999999998
No 257
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=91.76 E-value=0.71 Score=36.80 Aligned_cols=69 Identities=14% Similarity=0.130 Sum_probs=50.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhchh------hHHHHHHHHHHhhccccchhHHHHHHHhhcCccc---hhhHHHHHhh
Q psy3312 118 YVLGFGLLVSTLATLATPLAARSFG------AVGILCARFIVGLGQGPAYPSMNVILAQWVPKTE---RGRMGALVFA 186 (189)
Q Consensus 118 ~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~---r~~~~~~~~~ 186 (189)
|++.++.+++.++.+++.++..... .+.+.++.++.++|.|+.-+....+.+|.+++++ |.++..+++.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~ 79 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYW 79 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHH
Confidence 5677888888888888655543221 2577888889999999999999999999998763 4455555554
No 258
>KOG4332|consensus
Probab=91.31 E-value=1.5 Score=33.95 Aligned_cols=97 Identities=20% Similarity=0.251 Sum_probs=63.9
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhhhCCc--hhHHHHHHHHHHHHHHHHH----HhhchhhHHHHHHHHHHhhccccchh
Q psy3312 89 QGLILSSFFWGYVLNHIPGALIAERYGGK--YVLGFGLLVSTLATLATPL----AARSFGAVGILCARFIVGLGQGPAYP 162 (189)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r--~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~r~l~G~~~g~~~~ 162 (189)
-|.+.+.+++..++|+-+..++..|-.+| ..+.+..++......+..+ +++..+...-+++..+.-.+.|..+|
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP 363 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP 363 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence 57788888888888888887777765554 3444444443333322222 22222233335566666677788899
Q ss_pred HHHHHHHhhcCccchhhHHHHHh
Q psy3312 163 SMNVILAQWVPKTERGRMGALVF 185 (189)
Q Consensus 163 ~~~~~~~~~~~~~~r~~~~~~~~ 185 (189)
.++.+=.+..|.++|...+.++.
T Consensus 364 SimkmRsqyIPEearstimNfFR 386 (454)
T KOG4332|consen 364 SIMKMRSQYIPEEARSTIMNFFR 386 (454)
T ss_pred HHHHHHHhhCCHHHHhhhhhhee
Confidence 99999999999999998887653
No 259
>KOG3097|consensus
Probab=89.99 E-value=2.4 Score=33.61 Aligned_cols=73 Identities=18% Similarity=0.294 Sum_probs=52.4
Q ss_pred HHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhc
Q psy3312 96 FFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWV 172 (189)
Q Consensus 96 ~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~ 172 (189)
..+..+...++.+.+.+++|.|.++.++...+...... -+-+. +..++-.-...|++.+..+...-+++++..
T Consensus 67 ~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~-Nl~pr---~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g 139 (390)
T KOG3097|consen 67 LYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAA-NLEPR---YETLVPAGLVLGMAAGPIWASKGTYLTPMG 139 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh-hcchh---HHhhccHHHhhccccccccccCcceecHHH
Confidence 33445566666669999999999999888877654432 22233 566777888899999999887777766654
No 260
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=88.92 E-value=11 Score=30.66 Aligned_cols=90 Identities=12% Similarity=0.066 Sum_probs=66.6
Q ss_pred eeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccc
Q psy3312 81 EFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPA 160 (189)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~ 160 (189)
.++.+.-..+.+.-+-.+...+..+.+.++.+|...+.-+....++..++.++.+++++ .+.-+++-.+.+++.|..
T Consensus 53 ~~~c~~~~t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~---v~~~l~Gv~las~ssg~G 129 (402)
T PF02487_consen 53 RRDCKSVSTGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPS---VWVRLLGVVLASLSSGLG 129 (402)
T ss_pred CCCCCcccchHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccc---hhHHHHHHHHHhhhhhhh
Confidence 34444444566666777778888888889999998766666677777788888888777 777788888999988888
Q ss_pred hhHHHHHHHhhcCc
Q psy3312 161 YPSMNVILAQWVPK 174 (189)
Q Consensus 161 ~~~~~~~~~~~~~~ 174 (189)
......+.+ .+++
T Consensus 130 E~tfL~lt~-~y~~ 142 (402)
T PF02487_consen 130 EVTFLSLTH-FYGK 142 (402)
T ss_pred HHHHHHHHH-hcCc
Confidence 777777644 5544
No 261
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.49 E-value=2.8 Score=27.21 Aligned_cols=38 Identities=18% Similarity=0.085 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhhh-CCchhHHHHHHHH
Q psy3312 90 GLILSSFFWGYVLNHIPGALIAERY-GGKYVLGFGLLVS 127 (189)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~ 127 (189)
..-++.-++..++-....||+.||| |-++.-++.+++.
T Consensus 45 a~klssefIsGilVGa~iG~llD~~agTsPwglIv~lll 83 (116)
T COG5336 45 AFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLIVFLLL 83 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 3445666677777777889999998 6666544444333
No 262
>KOG0637|consensus
Probab=86.98 E-value=8.1 Score=32.09 Aligned_cols=80 Identities=18% Similarity=0.041 Sum_probs=57.8
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHH
Q psy3312 89 QGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVIL 168 (189)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~ 168 (189)
-.|-..++.+...+.+...-++.+|+|-|+.++.+...+.++..+..+.++ .+....-+-..|+-.+.....-...+
T Consensus 334 G~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~---~~~~~~~~~~~G~~~~~~~~~p~~l~ 410 (498)
T KOG0637|consen 334 GCLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLN---TYVVLSHRSTAGILSSPLLTVPYGAL 410 (498)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhh---HHHHHHHHhhcceeecchhcccHHHH
Confidence 345566777888889999999999999887777777767777777777776 56777777777765555555444444
Q ss_pred Hhh
Q psy3312 169 AQW 171 (189)
Q Consensus 169 ~~~ 171 (189)
++.
T Consensus 411 ~~y 413 (498)
T KOG0637|consen 411 ALY 413 (498)
T ss_pred HHH
Confidence 444
No 263
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=86.77 E-value=9.2 Score=31.27 Aligned_cols=92 Identities=5% Similarity=-0.044 Sum_probs=62.4
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHH--HHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHH
Q psy3312 89 QGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLL--VSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNV 166 (189)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~ 166 (189)
-|.+-++..+...++++..|.+..++.+..-+..+.+ +.+...+++....+ .|...++.++.+.......+.+..
T Consensus 287 NG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~---Iwv~Y~~yIif~~~y~fliTiA~~ 363 (412)
T PF01770_consen 287 NGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGN---IWVCYAGYIIFRSLYMFLITIASF 363 (412)
T ss_pred chHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777788888888899999999888877554444433 33333444455555 888888888877777767777777
Q ss_pred HHHhhcCccchhhHHHH
Q psy3312 167 ILAQWVPKTERGRMGAL 183 (189)
Q Consensus 167 ~~~~~~~~~~r~~~~~~ 183 (189)
-++.....+.-|..+|+
T Consensus 364 qIA~~l~~e~yaLVFGi 380 (412)
T PF01770_consen 364 QIAKNLSEERYALVFGI 380 (412)
T ss_pred HHHHhccccceeeeeee
Confidence 77777765555655544
No 264
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=86.52 E-value=17 Score=29.99 Aligned_cols=94 Identities=15% Similarity=0.009 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhhhCCc-hhHHHHHHHHHHHHHHHHHHhhc---------hhhHHHHHHHHHHhhcccc
Q psy3312 90 GLILSSFFWGYVLNHIPGALIAERYGGK-YVLGFGLLVSTLATLATPLAARS---------FGAVGILCARFIVGLGQGP 159 (189)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r-~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~r~l~G~~~g~ 159 (189)
-+....++++-.+|..+..+.. ..++| +.+.+..+.=.+...++.++... .+-+..++..++.|+..|-
T Consensus 310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy 388 (437)
T TIGR00939 310 IICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY 388 (437)
T ss_pred HHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence 4445677778888877554321 11222 13333333222222222222110 1256667778999999998
Q ss_pred chhHHHHHHHhhcCccchhhHHHHH
Q psy3312 160 AYPSMNVILAQWVPKTERGRMGALV 184 (189)
Q Consensus 160 ~~~~~~~~~~~~~~~~~r~~~~~~~ 184 (189)
.....+.+..+..+++||..+-.+.
T Consensus 389 ~~s~~m~~~p~~v~~~e~e~aG~~~ 413 (437)
T TIGR00939 389 LGSLSMCLAPRQVDPHEREVAGALM 413 (437)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 8889999999999988887665544
No 265
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=85.30 E-value=0.76 Score=37.66 Aligned_cols=104 Identities=18% Similarity=0.053 Sum_probs=72.7
Q ss_pred ccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHH-hhch------hhHHHHHHHHHHhhc
Q psy3312 84 WDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLA-ARSF------GAVGILCARFIVGLG 156 (189)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~r~l~G~~ 156 (189)
+++...+.+..+..++..++..+.....-++.-|+++....++..+..+..... .... +.+..+.--++..+.
T Consensus 252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~ 331 (433)
T PF03092_consen 252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVI 331 (433)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHH
Confidence 777788888888888889999999888888888888888877776655532211 1100 022333344555555
Q ss_pred cccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 157 QGPAYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 157 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
.+..+-....+++|.+|+..-|+..++..+.
T Consensus 332 ~~i~~mP~lvl~a~lcP~G~Egt~yall~s~ 362 (433)
T PF03092_consen 332 GMIAFMPSLVLAARLCPKGSEGTVYALLASF 362 (433)
T ss_pred HHHHHHHHHHHHHHHCCCCchHHHHHHHHHH
Confidence 5556667788999999999999988887653
No 266
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=84.04 E-value=0.32 Score=41.05 Aligned_cols=80 Identities=14% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHH-HHHH
Q psy3312 24 YLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFW-GYVL 102 (189)
Q Consensus 24 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 102 (189)
..+++...++..........+....|.+. +.+|+.++++++++..+..+ +.++
T Consensus 304 Np~f~~~~la~~~~~~~~~G~~tF~pKyl--------------------------E~QF~~sas~A~~l~G~v~ip~~~~ 357 (539)
T PF03137_consen 304 NPVFMCLILAGVFESFIVSGFATFLPKYL--------------------------ESQFGLSASQASLLTGIVSIPGAAL 357 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HHHhCCCHHHHHHHHhhhhcchhhe
Confidence 34445455555555555555555566555 37899999999999876555 6788
Q ss_pred hhhhhhhhhhhhCC--chhHHHHHHHHHH
Q psy3312 103 NHIPGALIAERYGG--KYVLGFGLLVSTL 129 (189)
Q Consensus 103 ~~~~~g~l~dr~g~--r~~l~~~~~~~~~ 129 (189)
|.+++|++..|+.. |..+....+...+
T Consensus 358 G~llGG~ivkk~kl~~~~~~~~~~v~~~v 386 (539)
T PF03137_consen 358 GILLGGYIVKKFKLSARGAAKFCIVVSIV 386 (539)
T ss_dssp -----------------------------
T ss_pred ehheEEEEEEEecCcHHHHHHHHHHHHHH
Confidence 99999999998853 4554444444333
No 267
>KOG3574|consensus
Probab=82.97 E-value=11 Score=30.92 Aligned_cols=40 Identities=13% Similarity=0.089 Sum_probs=23.4
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhh-----hhCCchhHH
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAE-----RYGGKYVLG 121 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-----r~g~r~~l~ 121 (189)
+.-|.+-++.+....++. --.--+++.++.| |+||||..+
T Consensus 58 ~ak~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~GrrksWv 102 (510)
T KOG3574|consen 58 QAKGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGRRKSWV 102 (510)
T ss_pred cCCCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhhcccccee
Confidence 444555555554332221 1234567888888 999998644
No 268
>KOG3626|consensus
Probab=77.45 E-value=9.2 Score=33.66 Aligned_cols=75 Identities=13% Similarity=0.100 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHH-HHHHHhh
Q psy3312 26 IGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFF-WGYVLNH 104 (189)
Q Consensus 26 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 104 (189)
+..+..++..........+....|-+. ++.|+.+.+.+..+.+... .+.++|.
T Consensus 393 if~~~~l~~~~~~~~~~G~~tFlPKyL--------------------------E~Qfg~sas~An~l~G~i~vp~~~~Gi 446 (735)
T KOG3626|consen 393 IFMLVVLASVIESLAITGYITFLPKYL--------------------------ETQFGISASLANILTGSIGVPAAAVGI 446 (735)
T ss_pred hHHHHHHHHHHHHHHHhhHHHhhHHHH--------------------------HHHcCCCHHHHHHHhhhhhhhhhhhhh
Confidence 444555566666555555555556555 2789999999999986554 5567899
Q ss_pred hhhhhhhhhhCC--chhHHHHHHH
Q psy3312 105 IPGALIAERYGG--KYVLGFGLLV 126 (189)
Q Consensus 105 ~~~g~l~dr~g~--r~~l~~~~~~ 126 (189)
++.|++..|+.. |.+..+.++.
T Consensus 447 ~lGG~iikkfkl~~r~~a~~~~~~ 470 (735)
T KOG3626|consen 447 FLGGLIIKKFKLSARGAAKFVIVC 470 (735)
T ss_pred hccceeeeeecccHHHHHHHHHHH
Confidence 999999998854 4444444333
No 269
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=76.27 E-value=12 Score=28.98 Aligned_cols=32 Identities=16% Similarity=0.153 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhCCchhHHHH
Q psy3312 92 ILSSFFWGYVLNHIPGALIAERYGGKYVLGFG 123 (189)
Q Consensus 92 ~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~ 123 (189)
+.....+|..+..++.|.++|++|.+..+.+.
T Consensus 269 i~~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~ 300 (310)
T TIGR01272 269 ILCLAIVGGAIVPLLQGSLADCLGIQLAFALP 300 (310)
T ss_pred HHHHHHhcchHHHHHHHHHHHhccchHHHHHH
Confidence 34566678888999999999999987665533
No 270
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=75.78 E-value=28 Score=29.36 Aligned_cols=92 Identities=7% Similarity=-0.083 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHH--HHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHH
Q psy3312 90 GLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGL--LVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVI 167 (189)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~ 167 (189)
|.+-++..+..+++++..|.+-.++.+---+.++. ++.+...+++...++ .|..+++.++.+.......+....-
T Consensus 301 G~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~---Iw~~Y~~yvlf~~~y~flitia~~~ 377 (511)
T TIGR00806 301 GAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHD---IWVLYVTYVLFRGIYQFLVPIATFQ 377 (511)
T ss_pred CHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccc---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777778888899999887775533333333 333333344444444 8888999999888888888888888
Q ss_pred HHhhcCccchhhHHHHH
Q psy3312 168 LAQWVPKTERGRMGALV 184 (189)
Q Consensus 168 ~~~~~~~~~r~~~~~~~ 184 (189)
+++....+.-|..+|+-
T Consensus 378 iA~~L~~~~~aLvFGiN 394 (511)
T TIGR00806 378 IASSLSKELCALVFGIN 394 (511)
T ss_pred HHHHhcccceEEEEecH
Confidence 88777655556555543
No 271
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=75.23 E-value=19 Score=23.12 Aligned_cols=42 Identities=19% Similarity=0.234 Sum_probs=29.1
Q ss_pred chhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHH
Q psy3312 88 TQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTL 129 (189)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~ 129 (189)
..+.......++..++..+.+.+.|..|.+..+........+
T Consensus 88 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (141)
T TIGR00880 88 ALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALA 129 (141)
T ss_pred HHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHH
Confidence 345666677788888888888888888876655554444333
No 272
>KOG1479|consensus
Probab=73.40 E-value=46 Score=27.28 Aligned_cols=30 Identities=10% Similarity=0.048 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHhhccccchhHHHHHHHhhc
Q psy3312 143 AVGILCARFIVGLGQGPAYPSMNVILAQWV 172 (189)
Q Consensus 143 ~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~ 172 (189)
++..++.-.+.+++.|..+.......++.-
T Consensus 117 f~vt~~~vv~~~~a~a~~qgs~~G~a~~~P 146 (406)
T KOG1479|consen 117 FLVTLIIVVLLNLANAVVQGSLYGLAGLFP 146 (406)
T ss_pred HHHHHHHHHHHhhhhhhhccchhhhhhcCC
Confidence 445556666677777666666666655443
No 273
>KOG3810|consensus
Probab=73.30 E-value=8.3 Score=31.04 Aligned_cols=93 Identities=8% Similarity=-0.075 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHH
Q psy3312 90 GLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILA 169 (189)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~ 169 (189)
|..-++..+..+++.+..|.+.-++.|..-+.++..-...+..++-.+.+++ .|...++..+...-.....+.+..-++
T Consensus 274 G~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~-Iw~~Ya~yvlfr~~y~l~itiA~~~iA 352 (433)
T KOG3810|consen 274 GAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQH-IWVCYAGYVLFRVIYQLTITIATFQIA 352 (433)
T ss_pred CHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccc-eehhhhhHHHHHhhHhhhhhHHHHHHH
Confidence 4555677778888999999999988887444444333333344444444333 777777777766666666666666666
Q ss_pred hhcCccchhhHHHH
Q psy3312 170 QWVPKTERGRMGAL 183 (189)
Q Consensus 170 ~~~~~~~r~~~~~~ 183 (189)
+....+.-|..+|+
T Consensus 353 ~nL~~e~~gLvFGi 366 (433)
T KOG3810|consen 353 RNLSSELFGLVFGI 366 (433)
T ss_pred Hhhhhhhheeeeeh
Confidence 66655555655544
No 274
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=71.31 E-value=62 Score=27.31 Aligned_cols=52 Identities=8% Similarity=-0.182 Sum_probs=38.4
Q ss_pred ccchhHHHHHHHH-HHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHH
Q psy3312 86 ERTQGLILSSFFW-GYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLA 137 (189)
Q Consensus 86 ~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~ 137 (189)
+....++-...-+ ...+..++.+++.+++.+.+++-.-+..+....+++++.
T Consensus 60 ae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~V 112 (509)
T COG3202 60 AESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFV 112 (509)
T ss_pred chhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666655 667888999999999999998877766666666666553
No 275
>COG1268 BioY Uncharacterized conserved protein [General function prediction only]
Probab=67.37 E-value=26 Score=25.29 Aligned_cols=23 Identities=17% Similarity=0.436 Sum_probs=20.8
Q ss_pred HHHHHHHHHhhhhhhhhhhhhCC
Q psy3312 94 SSFFWGYVLNHIPGALIAERYGG 116 (189)
Q Consensus 94 ~~~~~~~~~~~~~~g~l~dr~g~ 116 (189)
..|.+++.++..+.|++.||..+
T Consensus 89 gGyL~gfi~aa~l~G~l~~k~~~ 111 (184)
T COG1268 89 GGYLIGFIIAAFLIGLLAEKIRK 111 (184)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhc
Confidence 57888999999999999999985
No 276
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=66.51 E-value=11 Score=24.40 Aligned_cols=49 Identities=4% Similarity=0.008 Sum_probs=37.1
Q ss_pred ccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHH
Q psy3312 86 ERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLAT 134 (189)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~ 134 (189)
+...|-+.+.+.-.+++.++++++..|+..+.+-=.+|..+..++..+.
T Consensus 53 p~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI 101 (107)
T PF02694_consen 53 PAAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAII 101 (107)
T ss_pred cccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHhe
Confidence 3567888899999999999999999999988776555555555554443
No 277
>KOG3880|consensus
Probab=65.53 E-value=37 Score=27.09 Aligned_cols=58 Identities=12% Similarity=-0.056 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312 126 VSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFA 186 (189)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 186 (189)
++.+...+..+.++ .|...+..+.-|+-.|..+....--+.+-.+|++|..+++....
T Consensus 328 ~ff~~~a~~~ftps---i~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~ 385 (409)
T KOG3880|consen 328 LFFLLQAWYWFTPS---IWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSI 385 (409)
T ss_pred HHHHHHHHHHhccH---HHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhhee
Confidence 33344445556666 77777777888998888888888888888889999998887654
No 278
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=64.66 E-value=77 Score=25.86 Aligned_cols=86 Identities=14% Similarity=0.162 Sum_probs=52.9
Q ss_pred cccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhH----HHHHHHHHHHHHHH-HHHhhch-hhHHHHHHHHHHhhccc
Q psy3312 85 DERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVL----GFGLLVSTLATLAT-PLAARSF-GAVGILCARFIVGLGQG 158 (189)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l----~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~r~l~G~~~g 158 (189)
..-+.+++.+.+...+.+|+...-++.|.--.-+.+ +.|++...-..++. .++.... +-+.+.+.-++.|.-.|
T Consensus 41 ~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly~lt~vIG~LVG 120 (508)
T COG4262 41 GILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLYALTAVIGVLVG 120 (508)
T ss_pred ceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHHHHHHHHHHHHh
Confidence 445677888888888888888887777644332221 22222222112222 2332211 25677788888898889
Q ss_pred cchhHHHHHHHh
Q psy3312 159 PAYPSMNVILAQ 170 (189)
Q Consensus 159 ~~~~~~~~~~~~ 170 (189)
...|..+.++..
T Consensus 121 ~EiPL~mrml~~ 132 (508)
T COG4262 121 AEIPLLMRMLQR 132 (508)
T ss_pred cchHHHHHHHHH
Confidence 999998888776
No 279
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=62.82 E-value=75 Score=26.30 Aligned_cols=41 Identities=15% Similarity=-0.070 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHH
Q psy3312 90 GLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLA 130 (189)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~ 130 (189)
+...-...+..++..+..|.+.||..|.+++..+++..-++
T Consensus 41 siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~s 81 (432)
T PF06963_consen 41 SIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLS 81 (432)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHH
Confidence 33344455667788899999999999999877776544433
No 280
>PRK02237 hypothetical protein; Provisional
Probab=61.56 E-value=19 Score=23.44 Aligned_cols=48 Identities=8% Similarity=0.009 Sum_probs=35.9
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHH
Q psy3312 87 RTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLAT 134 (189)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~ 134 (189)
+..|-+.+.|.-.+++.++++++..|+..+.+-=.+|..+..++..+.
T Consensus 56 ~~~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI 103 (109)
T PRK02237 56 AAFGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVI 103 (109)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHh
Confidence 347888899999999999999999999987665555555555554433
No 281
>PF02632 BioY: BioY family; InterPro: IPR003784 BioMNY proteins are considered to constitute tripartite biotin transporters in prokaryotes. One-third of the widespread bioY genes are linked to bioMN. Many bioY genes are located at loci encoding biotin biosynthesis, while others are unlinked to biotin metabolic or transport genes. BioY is a high-capacity transporter that is converted to a high-affinity system in the presence of BioMN. BioMNY-mediated biotin uptake is severely impaired by the replacement of the Walker A lysine residue in BioM, demonstrating the dependency of high-affinity transport on a functional ATPase [].
Probab=61.01 E-value=47 Score=22.99 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=21.6
Q ss_pred HHHHHHHHHhhhhhhhhhhhhCCch
Q psy3312 94 SSFFWGYVLNHIPGALIAERYGGKY 118 (189)
Q Consensus 94 ~~~~~~~~~~~~~~g~l~dr~g~r~ 118 (189)
..|.+++.+.+.+.|++.+|..+++
T Consensus 60 gGyl~gf~~~a~i~g~~~~~~~~~~ 84 (148)
T PF02632_consen 60 GGYLLGFPLAALIIGLLAERLKRSR 84 (148)
T ss_pred ChHHHHHHHHHHHHHHHHHhccccc
Confidence 4678899999999999999988763
No 282
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=58.34 E-value=83 Score=24.20 Aligned_cols=95 Identities=15% Similarity=0.130 Sum_probs=49.9
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhh-hhCCchhHH----HHHHHHHHHHHHHHH-Hhhch-hhHHHHHHHHHHhhccccch
Q psy3312 89 QGLILSSFFWGYVLNHIPGALIAE-RYGGKYVLG----FGLLVSTLATLATPL-AARSF-GAVGILCARFIVGLGQGPAY 161 (189)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~g~l~d-r~g~r~~l~----~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~r~l~G~~~g~~~ 161 (189)
.....-.+..+..+|....|.+.. ++.||+.+. .++++..+..+.... ..+.. ....+.+.-++.|++.=+.+
T Consensus 143 ~~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ 222 (267)
T PF07672_consen 143 IPIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQ 222 (267)
T ss_pred hHHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhh
Confidence 344456677777888888888887 456666443 334444444443211 11110 24566777777776653444
Q ss_pred hHHHHHHHhh--cCccchhhHHHH
Q psy3312 162 PSMNVILAQW--VPKTERGRMGAL 183 (189)
Q Consensus 162 ~~~~~~~~~~--~~~~~r~~~~~~ 183 (189)
+....+-.|. ..|++-|...|+
T Consensus 223 ~ViL~lPhEyK~~~pk~ig~~Fg~ 246 (267)
T PF07672_consen 223 GVILNLPHEYKGYNPKKIGIQFGL 246 (267)
T ss_pred HHHhcChhhhcCCCcceehhHHHH
Confidence 4433333333 234444444443
No 283
>KOG2325|consensus
Probab=58.22 E-value=8.9 Score=32.09 Aligned_cols=37 Identities=8% Similarity=0.200 Sum_probs=27.2
Q ss_pred HHHHhhccccchhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312 150 RFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFA 186 (189)
Q Consensus 150 r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 186 (189)
-++.|.+.-.......++.+|...|++++.+.+++..
T Consensus 395 i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~ 431 (488)
T KOG2325|consen 395 IVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSI 431 (488)
T ss_pred hheeccccccccchHHHHHHHHhCCccccceeEEEEe
Confidence 3446666666667788899999999999887766543
No 284
>KOG1479|consensus
Probab=56.78 E-value=63 Score=26.51 Aligned_cols=92 Identities=17% Similarity=0.075 Sum_probs=56.3
Q ss_pred hHHHHH-HHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhh------chhhHHHHHHHHHHhhccccchh
Q psy3312 90 GLILSS-FFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAAR------SFGAVGILCARFIVGLGQGPAYP 162 (189)
Q Consensus 90 ~~~~~~-~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~r~l~G~~~g~~~~ 162 (189)
.++... +++.-.+|.+...++-++- ||. +.+..++-.+..-++.++.. ..+-+++++.-.+.|+..|-...
T Consensus 285 ~~~~~l~fN~~d~vG~~~a~~~~~~~-~r~-l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYlts 362 (406)
T KOG1479|consen 285 LLLVFLSFNVFDLIGSILAALLTWPD-PRK-LTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLTS 362 (406)
T ss_pred HHHHHHHhHHHHHhhhhhhhcccCCC-Cce-ehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHhh
Confidence 344445 7778888866666655443 333 33333333333333332221 11256778888999999998888
Q ss_pred HHHHHHHhhcCccchhhHHHH
Q psy3312 163 SMNVILAQWVPKTERGRMGAL 183 (189)
Q Consensus 163 ~~~~~~~~~~~~~~r~~~~~~ 183 (189)
..+.+..+-.|++|+-.+-.+
T Consensus 363 l~m~~aPk~v~~~e~e~aG~~ 383 (406)
T KOG1479|consen 363 LIMMYAPKQVKPSEKEAAGNL 383 (406)
T ss_pred heehhcCCCCChHHHHHHHHH
Confidence 888899999988887655443
No 285
>PF04550 Phage_holin_2: Phage holin family 2 ; InterPro: IPR007633 This entry represents the Bacteriophage P2, GpY, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=51.98 E-value=29 Score=21.72 Aligned_cols=10 Identities=30% Similarity=0.567 Sum_probs=4.0
Q ss_pred HHHHHHHhhc
Q psy3312 147 LCARFIVGLG 156 (189)
Q Consensus 147 ~~~r~l~G~~ 156 (189)
+++|.+.|-+
T Consensus 35 ~iGR~ilGs~ 44 (89)
T PF04550_consen 35 FIGRVILGSA 44 (89)
T ss_pred HhHHHHHhhH
Confidence 3444444333
No 286
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=47.87 E-value=48 Score=18.36 Aligned_cols=36 Identities=8% Similarity=-0.049 Sum_probs=20.5
Q ss_pred HHHHHHHHHhhhhhhhhhhh-hCCchhHHHHHHHHHH
Q psy3312 94 SSFFWGYVLNHIPGALIAER-YGGKYVLGFGLLVSTL 129 (189)
Q Consensus 94 ~~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~ 129 (189)
....+..++.....|+..|+ ++.++...+..++..+
T Consensus 7 g~~~~~~i~~g~~~G~~lD~~~~t~p~~~~~g~llG~ 43 (55)
T PF09527_consen 7 GFTMAAPILVGFFLGYWLDKWFGTSPWFTLIGLLLGI 43 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 34445556666677777774 4765655544444433
No 287
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=47.57 E-value=71 Score=26.39 Aligned_cols=32 Identities=19% Similarity=0.158 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHhhccccchhHHHHHHHhhcCcc
Q psy3312 143 AVGILCARFIVGLGQGPAYPSMNVILAQWVPKT 175 (189)
Q Consensus 143 ~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~ 175 (189)
++..++.-++.|++.+..+.....+.+ .+|++
T Consensus 106 f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~ 137 (437)
T TIGR00939 106 FVTTMASVVIINSGMALLQGSLFGLAG-VFPST 137 (437)
T ss_pred HHHHHHHHHHHHhhhhhhcccchhhcc-cCCHH
Confidence 566667777788888777777776655 45544
No 288
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=47.09 E-value=1.8e+02 Score=24.64 Aligned_cols=103 Identities=8% Similarity=-0.128 Sum_probs=56.3
Q ss_pred ccchhHHHHHHH-HHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHH--hh-----chh---------------
Q psy3312 86 ERTQGLILSSFF-WGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLA--AR-----SFG--------------- 142 (189)
Q Consensus 86 ~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--~~-----~~~--------------- 142 (189)
+.....+-.... -..++...+..++++++++.+++-+.+..+.....++++. |. .+.
T Consensus 57 ae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~ 136 (491)
T PF03219_consen 57 AEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKG 136 (491)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHH
Confidence 334455544333 3556678889999999999998776655555444444432 10 000
Q ss_pred ------hHHHHHHHHHHhhccccchh-HHHHHHHhhcCccchhhHHHHHhhcC
Q psy3312 143 ------AVGILCARFIVGLGQGPAYP-SMNVILAQWVPKTERGRMGALVFAGS 188 (189)
Q Consensus 143 ------~~~~~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~ 188 (189)
.|...+..+..-+-.....+ .-..+..|.++.+|-.|..+++..++
T Consensus 137 ~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ga 189 (491)
T PF03219_consen 137 FIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGA 189 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 01111111111111112222 34667788888888888888776654
No 289
>COG2119 Predicted membrane protein [Function unknown]
Probab=47.07 E-value=1.1e+02 Score=22.20 Aligned_cols=37 Identities=22% Similarity=0.239 Sum_probs=27.3
Q ss_pred HHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHH
Q psy3312 96 FFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATL 132 (189)
Q Consensus 96 ~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~ 132 (189)
..+..+++...+.++++|+..|++-.++.+++.+..+
T Consensus 143 ~~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~fal 179 (190)
T COG2119 143 MILASVLAVLLGKLIAGKLPERLLRFIAALLFLIFAL 179 (190)
T ss_pred HHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 3455677888888999999999887777666655443
No 290
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=43.98 E-value=86 Score=20.17 Aligned_cols=33 Identities=9% Similarity=0.067 Sum_probs=17.3
Q ss_pred HHHHHHHhhhhhhhhhh-hhCCchhHHHHHHHHH
Q psy3312 96 FFWGYVLNHIPGALIAE-RYGGKYVLGFGLLVST 128 (189)
Q Consensus 96 ~~~~~~~~~~~~g~l~d-r~g~r~~l~~~~~~~~ 128 (189)
..+..++.....|...| +++-++.+.+.+++.+
T Consensus 51 ~~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllG 84 (100)
T TIGR02230 51 SVAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVG 84 (100)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHH
Confidence 33444455555566666 5676665444444433
No 291
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=40.73 E-value=36 Score=23.75 Aligned_cols=38 Identities=18% Similarity=0.133 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHH
Q psy3312 144 VGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALV 184 (189)
Q Consensus 144 ~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~ 184 (189)
..+++...++|+|. ....+.+++---.+++-|...|+-
T Consensus 98 ~~~~~S~~~Fg~gl---lGisYGilSaSWD~~r~GSllG~~ 135 (153)
T PF11947_consen 98 AVLLVSLVFFGLGL---LGISYGILSASWDPEREGSLLGWE 135 (153)
T ss_pred HHHHHHHHHHHHHH---HhhhhhhcccccCCCCCCCcccHH
Confidence 34445555555543 234455555444566677777663
No 292
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=36.52 E-value=15 Score=28.59 Aligned_cols=92 Identities=11% Similarity=0.053 Sum_probs=3.7
Q ss_pred HHHHHHHHHHHhhhhhhhhhhh-hCCchhHHH--HHHHHHHHHHHHHHHhh-------chhhHHHHHHHHHHhhccccch
Q psy3312 92 ILSSFFWGYVLNHIPGALIAER-YGGKYVLGF--GLLVSTLATLATPLAAR-------SFGAVGILCARFIVGLGQGPAY 161 (189)
Q Consensus 92 ~~~~~~~~~~~~~~~~g~l~dr-~g~r~~l~~--~~~~~~~~~~~~~~~~~-------~~~~~~~~~~r~l~G~~~g~~~ 161 (189)
....++++-.+|..+.++.-=+ ..+|.++.. .-+++.-..+++..-+. ..+-++.++..++.|+..|-..
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl~ 266 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYLS 266 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchhh
Confidence 4557888888888877764211 124443332 12222111112211111 0114566777889999999999
Q ss_pred hHHHHHHHhhcCccchhhHHHH
Q psy3312 162 PSMNVILAQWVPKTERGRMGAL 183 (189)
Q Consensus 162 ~~~~~~~~~~~~~~~r~~~~~~ 183 (189)
...+.+..+..++++|..+-.+
T Consensus 267 tl~m~~~p~~v~~~e~e~aG~~ 288 (309)
T PF01733_consen 267 TLAMMYAPKSVSPEERELAGSV 288 (309)
T ss_dssp HHHH------------------
T ss_pred hceeeeCCCcCCHHHHHHHHHH
Confidence 9999999999998888766544
No 293
>PF13493 DUF4118: Domain of unknown function (DUF4118); PDB: 2KSF_A.
Probab=36.24 E-value=48 Score=20.90 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhCCc
Q psy3312 93 LSSFFWGYVLNHIPGALIAERYGGK 117 (189)
Q Consensus 93 ~~~~~~~~~~~~~~~g~l~dr~g~r 117 (189)
.......+.+...+.|.+.||..||
T Consensus 81 ~~~~~~~~l~va~v~g~l~~~~r~~ 105 (105)
T PF13493_consen 81 DWITFAVFLVVALVTGYLADRYRRQ 105 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3455566777888889999998775
No 294
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=35.47 E-value=1.8e+02 Score=24.11 Aligned_cols=83 Identities=16% Similarity=0.015 Sum_probs=45.7
Q ss_pred HHHHHHhhhhhhhhhhhhCCchh-----HHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhh
Q psy3312 97 FWGYVLNHIPGALIAERYGGKYV-----LGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQW 171 (189)
Q Consensus 97 ~~~~~~~~~~~g~l~dr~g~r~~-----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~ 171 (189)
.+-.+..++..=.+.+...++++ +++|+.+...-.++.+++.+.+ +.. +..+.. ..+......++...
T Consensus 301 giLFI~LTF~~fflfE~~~~~~iHpiQY~LVGlAl~lFYlLLLSlSEhi~-F~~---AYliAa---~a~i~Li~~Y~~~v 373 (430)
T PF06123_consen 301 GILFIGLTFLAFFLFELLSKLRIHPIQYLLVGLALVLFYLLLLSLSEHIG-FNL---AYLIAA---LACIGLISLYLSSV 373 (430)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhhc-hHH---HHHHHH---HHHHHHHHHHHHHH
Confidence 33344444444456676666654 6667777666777778877643 222 222211 12223445566667
Q ss_pred cCccchhhHHHHHhh
Q psy3312 172 VPKTERGRMGALVFA 186 (189)
Q Consensus 172 ~~~~~r~~~~~~~~~ 186 (189)
....+|+..++...+
T Consensus 374 l~~~k~~~~~~~~L~ 388 (430)
T PF06123_consen 374 LKSWKRGLIFAGLLA 388 (430)
T ss_pred HhcchHHHHHHHHHH
Confidence 766677776665543
No 295
>PRK11715 inner membrane protein; Provisional
Probab=33.10 E-value=2e+02 Score=23.90 Aligned_cols=85 Identities=14% Similarity=0.057 Sum_probs=47.7
Q ss_pred HHHHHHHhhhhhhhhhhhhCCchh-----HHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHh
Q psy3312 96 FFWGYVLNHIPGALIAERYGGKYV-----LGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQ 170 (189)
Q Consensus 96 ~~~~~~~~~~~~g~l~dr~g~r~~-----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~ 170 (189)
|.+-.+..++..=.+.+...++++ +++|+.+...-.++.+++.+.+ +...+ .+. ...+......++..
T Consensus 306 YgiLFI~LTF~~fFlfE~~~~~~iHpiQYlLVGlAl~lFYLLLLSlSEHig-F~~AY---liA---a~a~v~li~~Y~~~ 378 (436)
T PRK11715 306 YAILFIALTFAAFFLFELLKKLRIHPVQYLLVGLALVLFYLLLLSLSEHIG-FTLAY---LIA---ALACVLLIGFYLSA 378 (436)
T ss_pred HHHHHHHHHHHHHHHHHHhcCceecHHHHHHHHHHHHHHHHHHHHHHhhhc-hHHHH---HHH---HHHHHHHHHHHHHH
Confidence 333444444555567777777664 6667777767777778877644 22211 111 11122334456666
Q ss_pred hcCccchhhHHHHHhhc
Q psy3312 171 WVPKTERGRMGALVFAG 187 (189)
Q Consensus 171 ~~~~~~r~~~~~~~~~~ 187 (189)
.....+|+..++...++
T Consensus 379 vl~~~k~g~~~~~~L~~ 395 (436)
T PRK11715 379 VLRSWKRGLLFAAALAA 395 (436)
T ss_pred HHhcchHHHHHHHHHHH
Confidence 77677788777665443
No 296
>PF11299 DUF3100: Protein of unknown function (DUF3100); InterPro: IPR021450 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=31.70 E-value=94 Score=23.43 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=24.7
Q ss_pred HHHHHHhhccccchhHHHHHHHhhcCccchhhHHHH
Q psy3312 148 CARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGAL 183 (189)
Q Consensus 148 ~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~ 183 (189)
..-.-.|.|.|.++.++..-+.+.+| +......++
T Consensus 176 ALAMasGvGSgSMMaAa~~aL~~~~P-~~a~~i~A~ 210 (241)
T PF11299_consen 176 ALAMASGVGSGSMMAAASGALAAAYP-EMADQILAF 210 (241)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHCc-chHHHHHHH
Confidence 44456788888888888888888886 444444443
No 297
>PF10785 NADH-u_ox-rdase: NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit; InterPro: IPR019721 This domain is found in the N-terminal region of NADH-ubiquinone oxidoreductase 21kDa subunits from plants and fungi [].
Probab=30.74 E-value=1.4e+02 Score=18.58 Aligned_cols=40 Identities=8% Similarity=-0.021 Sum_probs=25.6
Q ss_pred HHHhhhhhhhhhhhhCC-------chhHHHHHHHHHHHHHHHHHHhh
Q psy3312 100 YVLNHIPGALIAERYGG-------KYVLGFGLLVSTLATLATPLAAR 139 (189)
Q Consensus 100 ~~~~~~~~g~l~dr~g~-------r~~l~~~~~~~~~~~~~~~~~~~ 139 (189)
...+.+..+++.+|..+ ++.+.++.++...+..++++..+
T Consensus 31 ~ta~~p~~~~~~~~~~~~~~~~~~~~~~~~a~~ig~~gGfl~ayqrS 77 (86)
T PF10785_consen 31 ATAASPPLGYYMERSAPSRVGRGGGPAMRLAGAIGFFGGFLLAYQRS 77 (86)
T ss_pred HHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 33445556666666654 67777777777777777766554
No 298
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=30.36 E-value=2.4e+02 Score=24.21 Aligned_cols=42 Identities=10% Similarity=0.047 Sum_probs=32.4
Q ss_pred HHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHhhcC
Q psy3312 147 LCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAGS 188 (189)
Q Consensus 147 ~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 188 (189)
++..++.-+..-..+.+.++.-++...|..=|+.|.+.+..+
T Consensus 409 I~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvS 450 (544)
T PF13000_consen 409 IIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVS 450 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHH
Confidence 444555566667778899999999999999999988877643
No 299
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=29.11 E-value=3.5e+02 Score=22.72 Aligned_cols=99 Identities=14% Similarity=0.104 Sum_probs=58.3
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP 159 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (189)
...+++..+...+.+...+...+++++.-....+.|-|-....+.-+..++.++.............+.+-+..|+..-.
T Consensus 42 ~a~~l~~~~~~~Lis~~l~~~GiaTllq~~~~~~~g~~lP~~lG~sFafi~p~i~~~~~~g~~~~~~~G~ii~ag~~~~l 121 (451)
T COG2233 42 LALGLSAEDTAYLISADLLASGIGTLLQLLGTGPGGSGLPSYLGSSFAFVAPMIAIGGTTGDGIAALLGGIIAAGLVYFL 121 (451)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCCCeeEechHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHH
Confidence 67889999999999998888999888876644445555544545545555554433332111133444555555554433
Q ss_pred chhHHHHHHHhhcCccchh
Q psy3312 160 AYPSMNVILAQWVPKTERG 178 (189)
Q Consensus 160 ~~~~~~~~~~~~~~~~~r~ 178 (189)
..+.....+.+.+||-.-|
T Consensus 122 i~~~~~~~l~rlfPPvVtG 140 (451)
T COG2233 122 ISPIVKIRLARLFPPVVTG 140 (451)
T ss_pred HHHHHHHHHHHhCCCceEE
Confidence 3222222777888875554
No 300
>PF14494 DUF4436: Domain of unknown function (DUF4436)
Probab=28.65 E-value=2.5e+02 Score=21.50 Aligned_cols=39 Identities=13% Similarity=-0.042 Sum_probs=24.8
Q ss_pred ccccchhHHHHHHHHHHH-----HhhhhhhhhhhhhCCchhHHH
Q psy3312 84 WDERTQGLILSSFFWGYV-----LNHIPGALIAERYGGKYVLGF 122 (189)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~-----~~~~~~g~l~dr~g~r~~l~~ 122 (189)
+.....+|..+..+..-. -++|+.|.+.|-.+--..+++
T Consensus 198 ~~~~~l~w~aA~LFAlp~lRN~lPGaPP~G~~iD~~~vlW~~i~ 241 (256)
T PF14494_consen 198 FEPPMLTWMAAMLFALPPLRNILPGAPPIGSWIDFAGVLWVLIA 241 (256)
T ss_pred cccchHHHHHHHHHhhhhHhccCCCCCCCcceEeeeehHHHHHH
Confidence 334456776654333322 489999999999886655443
No 301
>KOG2399|consensus
Probab=27.86 E-value=4.2e+02 Score=23.24 Aligned_cols=55 Identities=16% Similarity=0.230 Sum_probs=43.7
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHH
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPL 136 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~ 136 (189)
.-++++++-.|+ ++..++..+|-+++..-.-|-|.-++-..+++..-+.+.+.++
T Consensus 475 ~I~~ls~siLGL--Tv~AWgNSiGDLIAniavak~G~p~MAmaac~GGplfn~lvg~ 529 (605)
T KOG2399|consen 475 VIFGLSPSILGL--TVLAWGNSIGDLIANIAVAKQGYPRMAMAACIGGPLFNLLVGL 529 (605)
T ss_pred HHhCCCHHHHHH--HHHHHhccHHHHHHHHHHHHcCcHHHHHHHHhhhHHHHHHHHh
Confidence 557777765554 7888999999999999999999999888888877776655544
No 302
>COG3389 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.78 E-value=85 Score=23.61 Aligned_cols=29 Identities=24% Similarity=0.411 Sum_probs=20.4
Q ss_pred HHHHHHHHHhhhhhhhhhhhhCCchhHHH
Q psy3312 94 SSFFWGYVLNHIPGALIAERYGGKYVLGF 122 (189)
Q Consensus 94 ~~~~~~~~~~~~~~g~l~dr~g~r~~l~~ 122 (189)
+.+.+++++....+-.+.-|+|||+++..
T Consensus 35 s~yyfv~Il~atlfill~Ik~~~kwI~r~ 63 (277)
T COG3389 35 SVYYFVYILVATLFILLAIKLGRKWIFRG 63 (277)
T ss_pred ceeeehhHHHHHHHHHhheeecceeeehh
Confidence 44556666666677778889999876554
No 303
>PLN02975 complex I subunit
Probab=27.39 E-value=1.7e+02 Score=18.69 Aligned_cols=25 Identities=8% Similarity=-0.048 Sum_probs=15.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhh
Q psy3312 115 GGKYVLGFGLLVSTLATLATPLAAR 139 (189)
Q Consensus 115 g~r~~l~~~~~~~~~~~~~~~~~~~ 139 (189)
++++.+.++.++...+.++.++..+
T Consensus 54 ~~~~~mr~ag~iG~~gGf~~aYq~S 78 (97)
T PLN02975 54 IRGPSMVTGGLIGLMGGFMYAYQNS 78 (97)
T ss_pred ccchHHHHHHHHHHhhhHHhhhccc
Confidence 4566677776666666666665544
No 304
>PF05232 BTP: Bacterial Transmembrane Pair family; InterPro: IPR007896 This domain represents a conserved pair of transmembrane helices. It appears to be found as two tandem repeats in a family of hypothetical proteins.
Probab=27.34 E-value=1.4e+02 Score=17.53 Aligned_cols=38 Identities=3% Similarity=-0.105 Sum_probs=29.9
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGK 117 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r 117 (189)
--+|.+..+.+.+.....+..++=..+..++-||+=+|
T Consensus 27 ~~~~~~~~~a~~l~v~~s~~a~~wn~ifN~~FD~~~~r 64 (67)
T PF05232_consen 27 WWLGISLWQAGALDVGLSLFAMVWNYIFNWLFDKIEPR 64 (67)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44566777788887788888888889999999988554
No 305
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=27.31 E-value=2.2e+02 Score=19.79 Aligned_cols=42 Identities=12% Similarity=-0.005 Sum_probs=28.9
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHH
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLG 121 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~ 121 (189)
-+.|++....--.....++.-.++-++..+++|+.+....+.
T Consensus 65 VeiGi~EkslL~sA~LvYi~PL~~l~v~~~La~~L~~~e~~~ 106 (150)
T COG3086 65 VELGIEEKSLLKSALLVYIFPLVGLFLGAILAQYLFFSELIV 106 (150)
T ss_pred EEEccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 556666554444445667777788888889999998865444
No 306
>KOG3097|consensus
Probab=26.71 E-value=46 Score=26.73 Aligned_cols=72 Identities=18% Similarity=0.168 Sum_probs=47.4
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHH-HHHHHHhhchhhHHHHHHHHHHhhccc
Q psy3312 87 RTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLAT-LATPLAARSFGAVGILCARFIVGLGQG 158 (189)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~r~l~G~~~g 158 (189)
...+.....+.++.++.+.+.|.+..++||.+.+..+.+.-..-. ......++..+.+.+.+.-.++|.+.+
T Consensus 310 ~~igf~m~cfgv~~Av~S~~~g~L~~~~gr~~~~v~gavv~l~li~~~~~w~~~~~~~~i~y~~aalwgv~d~ 382 (390)
T KOG3097|consen 310 SRIGFAMACFGVGDAVASSLFGLLGKWIGRPPLLVLGAVVHLLLITILFFWAPNPQDSWIFYVAAALWGVGDA 382 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHHhcccCCCCceEEEeehhhcCccHH
Confidence 456777788888888999999999999999988777655443322 222233332224555566666666544
No 307
>PF14851 FAM176: FAM176 family
Probab=26.34 E-value=1.3e+02 Score=21.10 Aligned_cols=42 Identities=10% Similarity=0.021 Sum_probs=26.0
Q ss_pred HHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhc
Q psy3312 130 ATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWV 172 (189)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~ 172 (189)
++.+.+++.-.. -+--..+.|+.|++.|.....+...+.-.+
T Consensus 6 SnsLaaya~I~~-~PE~~aLYFv~gVC~GLlLtLcllV~risc 47 (153)
T PF14851_consen 6 SNSLAAYAHIRD-NPERFALYFVSGVCAGLLLTLCLLVIRISC 47 (153)
T ss_pred HHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 344444443222 335567778888888888887777666656
No 308
>COG5346 Predicted membrane protein [Function unknown]
Probab=25.39 E-value=2.2e+02 Score=19.13 Aligned_cols=20 Identities=15% Similarity=0.310 Sum_probs=11.2
Q ss_pred hhhhhhhhCCchhHHHHHHH
Q psy3312 107 GALIAERYGGKYVLGFGLLV 126 (189)
Q Consensus 107 ~g~l~dr~g~r~~l~~~~~~ 126 (189)
-|.+..|+-|+-.+++|..+
T Consensus 82 r~~~~~~~tril~liFgi~L 101 (136)
T COG5346 82 RGQLYAKLTRILLLIFGIFL 101 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666655544
No 309
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=24.97 E-value=2.5e+02 Score=19.61 Aligned_cols=33 Identities=15% Similarity=-0.053 Sum_probs=22.0
Q ss_pred chhHHHHHHHHHHHHhhhhhhhhhhhhCCchhH
Q psy3312 88 TQGLILSSFFWGYVLNHIPGALIAERYGGKYVL 120 (189)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l 120 (189)
+.++..-++.+|...+.-+..-+...-|-++..
T Consensus 57 ~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~ 89 (154)
T TIGR01625 57 EFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRIN 89 (154)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHH
Confidence 577777788888888887776665543344443
No 310
>KOG3880|consensus
Probab=23.27 E-value=95 Score=24.91 Aligned_cols=69 Identities=12% Similarity=0.177 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccc
Q psy3312 89 QGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPA 160 (189)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~ 160 (189)
.+.+.-.-.+...+-.+.+..+.||+.-.+-..+..++.+.+..+.+++.+ .+.-+.+..+..++.|..
T Consensus 64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s---~~~sL~GV~~aSissGlG 132 (409)
T KOG3880|consen 64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNS---VPMSLLGVVFASISSGLG 132 (409)
T ss_pred cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccc---hhHHHhhhhhhhhcCCcc
Confidence 344444555566666777777888886555556666677777777777766 445555555544444433
No 311
>PF11752 DUF3309: Protein of unknown function (DUF3309); InterPro: IPR021738 This family is conserved in bacteria but its function is not known.
Probab=22.98 E-value=1.3e+02 Score=16.58 Aligned_cols=36 Identities=14% Similarity=0.212 Sum_probs=26.0
Q ss_pred HHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHH
Q psy3312 95 SFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLA 130 (189)
Q Consensus 95 ~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~ 130 (189)
+..+-..++.++...-+..||..+.-..+.++..+-
T Consensus 6 IiLil~LigalP~wp~sr~wGy~PsG~lG~ilvivi 41 (49)
T PF11752_consen 6 IILILLLIGALPTWPYSRGWGYGPSGGLGLILVIVI 41 (49)
T ss_pred HHHHHHHHhcCCCCCCCCCCCcCCccHHHHHHHHHH
Confidence 334556678888888899999988777776665443
No 312
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=21.02 E-value=5.1e+02 Score=22.39 Aligned_cols=90 Identities=17% Similarity=0.076 Sum_probs=46.5
Q ss_pred chhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhh--chhhHHHHHHHHHHhhccccchhHHH
Q psy3312 88 TQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAAR--SFGAVGILCARFIVGLGQGPAYPSMN 165 (189)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~r~l~G~~~g~~~~~~~ 165 (189)
+.|+..-++.+|...+.-+...+.+ .|-+..+ .+.++..+..++..+... .+ ... ...+-.++.+...+...
T Consensus 451 ~~GL~lFla~vG~~aG~~f~~~l~~-~G~~~~~-~g~~~~~~~~~~~~~~~~~~~~-~~~---~~~~G~~aG~~t~t~~l 524 (562)
T TIGR03802 451 DLGLALFIAVVGLSAGPQAVTAIKE-MGLTLFL-LGIVVTILPLIITMLIGKYVLK-YDP---ALLLGALAGARTATPAL 524 (562)
T ss_pred HHhHHHHHHHHHHhhhHHHHHHHHH-hhHHHHH-HHHHHHHHHHHHHHHHHHHHhC-CCH---HHHHHHhhccCCCcHHH
Confidence 4677777888888888877777744 5555444 444444444333222221 00 111 12222233445566667
Q ss_pred HHHHhhcCccchhhHHHH
Q psy3312 166 VILAQWVPKTERGRMGAL 183 (189)
Q Consensus 166 ~~~~~~~~~~~r~~~~~~ 183 (189)
....|..+.+.-..+++.
T Consensus 525 ~~a~~~~~~~~~~~gYa~ 542 (562)
T TIGR03802 525 GAVLERAGSSVPALGYTI 542 (562)
T ss_pred HHHHHhcCCCCcccchHh
Confidence 777777654433333433
No 313
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.74 E-value=98 Score=21.56 Aligned_cols=20 Identities=10% Similarity=0.192 Sum_probs=15.3
Q ss_pred HHHHHHHhhhhhhhhhhhhC
Q psy3312 96 FFWGYVLNHIPGALIAERYG 115 (189)
Q Consensus 96 ~~~~~~~~~~~~g~l~dr~g 115 (189)
.....+.++++.|.+.|+||
T Consensus 98 t~~l~i~gQli~glliD~fG 117 (150)
T COG3238 98 TIALVIAGQLIMGLLIDHFG 117 (150)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 33445678899999999987
No 314
>PF11298 DUF3099: Protein of unknown function (DUF3099); InterPro: IPR021449 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=20.49 E-value=1.8e+02 Score=17.47 Aligned_cols=60 Identities=10% Similarity=0.005 Sum_probs=31.2
Q ss_pred hhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccc
Q psy3312 110 IAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTE 176 (189)
Q Consensus 110 l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~ 176 (189)
--|+-.|++.+.+.+.+-..+.++..+... .+++....+ ..+...|-...++++--++++
T Consensus 10 ~~d~~~R~r~Y~i~M~~Ri~~fvlA~~~~~---~~~la~~~~----~~av~LPwvAVviAN~~~~~~ 69 (73)
T PF11298_consen 10 SQDQRRRRRRYLIMMGIRIPCFVLAAVVYR---LGWLAWAII----VGAVPLPWVAVVIANARPPRR 69 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHH----HHhcccchhheeeccCCCCCC
Confidence 346667777777777766666665555543 212111111 123345555556666554443
No 315
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=20.44 E-value=1.2e+02 Score=15.23 Aligned_cols=20 Identities=5% Similarity=0.069 Sum_probs=11.8
Q ss_pred HHHHHHHHHhhhhhhhhhhh
Q psy3312 94 SSFFWGYVLNHIPGALIAER 113 (189)
Q Consensus 94 ~~~~~~~~~~~~~~g~l~dr 113 (189)
+...+..++.+++.+|+-+|
T Consensus 15 AAP~iagIi~s~iv~w~~~R 34 (35)
T PF13940_consen 15 AAPIIAGIIASLIVGWLRNR 34 (35)
T ss_pred HhHHHHHHHHHHHHHHHHhc
Confidence 34455566666666666554
No 316
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=20.43 E-value=2.4e+02 Score=17.80 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=15.5
Q ss_pred hhhhhhhCCchhHHHHHHHHHHHHHHH
Q psy3312 108 ALIAERYGGKYVLGFGLLVSTLATLAT 134 (189)
Q Consensus 108 g~l~dr~g~r~~l~~~~~~~~~~~~~~ 134 (189)
+.+.+++. -+++.|.++.+++++..
T Consensus 5 ~~~~n~~S--~vli~GiiLL~~aCIfA 29 (92)
T PF05767_consen 5 GFLSNYFS--GVLIGGIILLIAACIFA 29 (92)
T ss_pred HHHHhccc--hHHHHHHHHHHHHHHHH
Confidence 44455554 56777777777776643
Done!