Query psy3312
Match_columns 189
No_of_seqs 209 out of 2014
Neff 10.0
Searched_HMMs 29240
Date Fri Aug 16 21:47:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3312.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3312hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 99.8 6.6E-19 2.3E-23 140.6 12.9 136 21-187 24-163 (451)
2 3o7q_A L-fucose-proton symport 99.8 9.7E-19 3.3E-23 139.2 12.7 134 24-187 25-161 (438)
3 4gc0_A D-xylose-proton symport 99.8 7.3E-19 2.5E-23 142.1 11.5 145 21-187 8-170 (491)
4 2gfp_A EMRD, multidrug resista 99.7 2.1E-16 7.3E-21 123.6 11.4 128 30-187 5-132 (375)
5 4aps_A DI-OR tripeptide H+ sym 99.6 1.4E-15 4.8E-20 122.9 11.0 104 80-186 47-153 (491)
6 2xut_A Proton/peptide symporte 99.6 1.9E-14 6.5E-19 117.2 12.5 101 80-183 41-149 (524)
7 1pw4_A Glycerol-3-phosphate tr 99.2 1.4E-10 4.8E-15 92.2 12.9 107 80-187 281-390 (451)
8 3o7q_A L-fucose-proton symport 99.1 2.2E-10 7.5E-15 90.9 9.1 101 80-185 288-388 (438)
9 2cfq_A Lactose permease; trans 99.0 2.9E-09 1E-13 84.5 10.9 97 85-184 257-353 (417)
10 2cfq_A Lactose permease; trans 99.0 3E-10 1E-14 90.2 4.6 103 80-184 36-143 (417)
11 2gfp_A EMRD, multidrug resista 98.9 7.5E-10 2.6E-14 86.3 5.1 105 80-187 228-334 (375)
12 4aps_A DI-OR tripeptide H+ sym 98.9 3E-09 1E-13 85.7 7.3 108 80-187 312-430 (491)
13 4gc0_A D-xylose-proton symport 98.8 6E-08 2.1E-12 78.0 13.6 106 80-186 305-413 (491)
14 2xut_A Proton/peptide symporte 97.9 4.2E-06 1.4E-10 67.9 3.4 100 88-187 336-449 (524)
15 2g9p_A Antimicrobial peptide l 74.7 1.2 4.1E-05 19.4 0.9 14 106-119 2-15 (26)
16 4dve_A Biotin transporter BIOY 58.5 33 0.0011 24.1 6.2 25 93-117 99-123 (198)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.80 E-value=6.6e-19 Score=140.60 Aligned_cols=136 Identities=19% Similarity=0.300 Sum_probs=122.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHH
Q psy3312 21 SQRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGY 100 (189)
Q Consensus 21 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (189)
+.++..+...++..+........+.+..|.+. +++ .+..+.+++.+++.++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~-~s~~~~g~~~~~~~~~~ 75 (451)
T 1pw4_A 24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV---------------------------EQG-FSRGDLGFALSGISIAY 75 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT---------------------------SST-TCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHh-ccHhHHHHHHHHHHHHH
Confidence 34456666677777788888888888899888 778 99999999999999999
Q ss_pred HHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHH----HhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccc
Q psy3312 101 VLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPL----AARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTE 176 (189)
Q Consensus 101 ~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~ 176 (189)
.++.+++|+++||+|||+++.++.++.+++.++.++ +++ ++.++++|+++|++.+...+...+++.|++|+++
T Consensus 76 ~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~ 152 (451)
T 1pw4_A 76 GFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSS---IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE 152 (451)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSS---SSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH
T ss_pred HHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcccc---HHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh
Confidence 999999999999999999999999999999999988 776 8899999999999999999999999999999999
Q ss_pred hhhHHHHHhhc
Q psy3312 177 RGRMGALVFAG 187 (189)
Q Consensus 177 r~~~~~~~~~~ 187 (189)
|+++.++...+
T Consensus 153 r~~~~~~~~~~ 163 (451)
T 1pw4_A 153 RGGIVSVWNCA 163 (451)
T ss_dssp HHHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 99999987654
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.79 E-value=9.7e-19 Score=139.24 Aligned_cols=134 Identities=19% Similarity=0.188 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHh
Q psy3312 24 YLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLN 103 (189)
Q Consensus 24 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (189)
+..+.++.+..+.........++..|.+. +++|++..+.+++.+.+.++..++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~g~s~~~~g~~~~~~~~~~~i~ 77 (438)
T 3o7q_A 25 IIPFALLCSLFFLWAVANNLNDILLPQFQ---------------------------QAFTLTNFQAGLIQSAFYFGYFII 77 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHSCCCSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH---------------------------HHcCCCHHHHHHHHHHHHHHHHHH
Confidence 34444456666667777778888888888 889999999999999999999999
Q ss_pred hhhhhhhhhhhCCchhHHHHHHHHHHHHHHH---HHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhH
Q psy3312 104 HIPGALIAERYGGKYVLGFGLLVSTLATLAT---PLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRM 180 (189)
Q Consensus 104 ~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~ 180 (189)
.++.|+++||+|||+++..+.++.+++.++. .++++ ++.+++.|+++|++.+...+....+++|++|+++|+++
T Consensus 78 ~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~ 154 (438)
T 3o7q_A 78 PIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMN---YTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFR 154 (438)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHH
T ss_pred HHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcccccc---HHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHH
Confidence 9999999999999999999999999999988 66666 89999999999999999999999999999999999999
Q ss_pred HHHHhhc
Q psy3312 181 GALVFAG 187 (189)
Q Consensus 181 ~~~~~~~ 187 (189)
.++...+
T Consensus 155 ~~~~~~~ 161 (438)
T 3o7q_A 155 LNLAQTF 161 (438)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887654
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.79 E-value=7.3e-19 Score=142.07 Aligned_cols=145 Identities=17% Similarity=0.192 Sum_probs=114.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHH
Q psy3312 21 SQRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGY 100 (189)
Q Consensus 21 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (189)
++.+.+.+++.++.+....+...++...+.+......+.+ ...+.+..+.+++.+.+.+|.
T Consensus 8 ~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~g~~~s~~~~G~ 68 (491)
T 4gc0_A 8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQN-------------------LSESAANSLLGFCVASALIGC 68 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGC-------------------CCHHHHHHHHHHHHHTHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-------------------CCcccHHHHHHHHHHHHHHHH
Confidence 3345555555666666666777777777776521111110 222345567889999999999
Q ss_pred HHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHH------------------HhhchhhHHHHHHHHHHhhccccchh
Q psy3312 101 VLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPL------------------AARSFGAVGILCARFIVGLGQGPAYP 162 (189)
Q Consensus 101 ~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~r~l~G~~~g~~~~ 162 (189)
+++++++|+++||+|||+++.++.+++.++.++.++ +++ ++.++++|+++|++.|+..+
T Consensus 69 ~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~---~~~l~~~R~l~G~g~G~~~~ 145 (491)
T 4gc0_A 69 IIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGY---VPEFVIYRIIGGIGVGLASM 145 (491)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGC---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhh---HHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998874 455 88999999999999999999
Q ss_pred HHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 163 SMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 163 ~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
..+.+++|+.|+++|++..++...+
T Consensus 146 ~~~~~i~E~~p~~~rg~~~~~~~~~ 170 (491)
T 4gc0_A 146 LSPMYIAELAPAHIRGKLVSFNQFA 170 (491)
T ss_dssp HHHHHHHTTSCGGGHHHHHHHHHHH
T ss_pred HHHHHHHhhCCHHhhhhhHHhhhhh
Confidence 9999999999999999998876543
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.68 E-value=2.1e-16 Score=123.56 Aligned_cols=128 Identities=19% Similarity=0.243 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhccCccccCCccCCCCcccccccccccceeeeccccchhHHHHHHHHHHHHhhhhhhh
Q psy3312 30 GFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGAL 109 (189)
Q Consensus 30 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 109 (189)
..+..+........+.+..|.+. +++|.++.+.+++.+.+.++..++.++.|+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~ 57 (375)
T 2gfp_A 5 LVLLVAVGQMAQTIYIPAIADMA---------------------------RDLNVREGAVQSVMGAYLLTYGVSQLFYGP 57 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---------------------------TTSSSTTHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHH---------------------------HHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666667777888887 889999999999999999999999999999
Q ss_pred hhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 110 IAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 110 l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
++||+|||+++..+.++..++.++..++++ ++.+++.|+++|++.+...+....++.|++|+++|+++.++...+
T Consensus 58 l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (375)
T 2gfp_A 58 ISDRVGRRPVILVGMSIFMLATLVAVTTSS---LTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMG 132 (375)
T ss_dssp HHTTSCCCCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHH
T ss_pred HHHHhCCchhHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999887 889999999999999999999999999999999999999987654
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.63 E-value=1.4e-15 Score=122.89 Aligned_cols=104 Identities=14% Similarity=0.220 Sum_probs=95.4
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhh-hCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAER-YGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQG 158 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g 158 (189)
+++|++..+.+++.+.+.++..+++++.|+++|| +|||+++..+.++.+++.++.+++++ ++.+++.|+++|++.+
T Consensus 47 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~~~~ 123 (491)
T 4aps_A 47 GDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFG---ASALFGSIILIIIGTG 123 (491)
T ss_dssp TSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCS---TTHHHHHHHHHHHHHH
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHH
Confidence 3499999999999999999999999999999999 89999999999999999999988877 8899999999999999
Q ss_pred cchhHHHHHHHhhcCccc--hhhHHHHHhh
Q psy3312 159 PAYPSMNVILAQWVPKTE--RGRMGALVFA 186 (189)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~--r~~~~~~~~~ 186 (189)
...+....+++|++|+++ |+++.++++.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 153 (491)
T 4aps_A 124 FLKPNVSTLVGTLYDEHDRRRDAGFSIFVF 153 (491)
T ss_dssp HHHHHHHHHHHHHSSSCTTHHHHHHHHHHH
T ss_pred hccchHHHHHHHHcCcccccceeeehHHHH
Confidence 999999999999999988 6667766544
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.58 E-value=1.9e-14 Score=117.22 Aligned_cols=101 Identities=15% Similarity=0.231 Sum_probs=93.6
Q ss_pred eeee------ccccchhHHHHHHHHHHHHhhhhhhhhhhhh-CCchhHHHHHHHHHHHHHHHHHHh-hchhhHHHHHHHH
Q psy3312 80 YEFD------WDERTQGLILSSFFWGYVLNHIPGALIAERY-GGKYVLGFGLLVSTLATLATPLAA-RSFGAVGILCARF 151 (189)
Q Consensus 80 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~r~ 151 (189)
+++| ++..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++.+++.++..+++ + ++.+++.|+
T Consensus 41 ~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 117 (524)
T 2xut_A 41 TALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHS---VQGFYTGLF 117 (524)
T ss_dssp HSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSC---HHHHHHHHH
T ss_pred HHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccc---HHHHHHHHH
Confidence 5667 9999999999999999999999999999999 999999999999999999888887 6 888999999
Q ss_pred HHhhccccchhHHHHHHHhhcCccchhhHHHH
Q psy3312 152 IVGLGQGPAYPSMNVILAQWVPKTERGRMGAL 183 (189)
Q Consensus 152 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~ 183 (189)
++|++.+...+....++.|++|+++|++..++
T Consensus 118 l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 149 (524)
T 2xut_A 118 LIALGSGGIKPLVSSFMGDQFDQSNKSLAQKA 149 (524)
T ss_dssp HHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHH
T ss_pred HHHHhccccchhHHHHHHHHcCccchHHHHHH
Confidence 99999999999999999999999999866555
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.23 E-value=1.4e-10 Score=92.24 Aligned_cols=107 Identities=7% Similarity=0.030 Sum_probs=89.6
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhh--CCchhHHHHHHHHH-HHHHHHHHHhhchhhHHHHHHHHHHhhc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERY--GGKYVLGFGLLVST-LATLATPLAARSFGAVGILCARFIVGLG 156 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--g~r~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~l~G~~ 156 (189)
+.+|++..+.+++.+...++.+++.++.|++.||+ |||+.+..+.++.. ++.++..+.++.. .+.+.+..++.|++
T Consensus 281 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~ 359 (451)
T 1pw4_A 281 EVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGN-PTVDMICMIVIGFL 359 (451)
T ss_dssp TBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTC-HHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccC-HHHHHHHHHHHHHH
Confidence 45889999999999999999999999999999999 99998888877766 5555555543222 66777788889998
Q ss_pred cccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 157 QGPAYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 157 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
.+...+....++.|.+|+++|+++.|+.+..
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 390 (451)
T 1pw4_A 360 IYGPVMLIGLHALELAPKKAAGTAAGFTGLF 390 (451)
T ss_dssp HTHHHHHHHHHHHHTSCTTHHHHHHHHHHHH
T ss_pred HhchHHHHHHHHHHHhchhhhhhHHHHHHHH
Confidence 8888888899999999999999999998653
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.12 E-value=2.2e-10 Score=90.86 Aligned_cols=101 Identities=13% Similarity=0.130 Sum_probs=85.2
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcccc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGP 159 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (189)
+.+|.+..+.+++.+...++.+++.++.|++.||+|||+++..+.++..++.++..+.++ .+.+ +..++.|++.+.
T Consensus 288 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~g~~~~~ 363 (438)
T 3o7q_A 288 EIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGG---HVGL-IALTLCSAFMSI 363 (438)
T ss_dssp HSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCH---HHHH-HHHHHHHHHHTT
T ss_pred ccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCC---cHHH-HHHHHHHHHHHH
Confidence 556889999999999999999999999999999999999999999988888877777655 4443 344788899999
Q ss_pred chhHHHHHHHhhcCccchhhHHHHHh
Q psy3312 160 AYPSMNVILAQWVPKTERGRMGALVF 185 (189)
Q Consensus 160 ~~~~~~~~~~~~~~~~~r~~~~~~~~ 185 (189)
.++....+..|.+|++ |+++.++..
T Consensus 364 ~~~~~~~~~~~~~~~~-~~~~~~~~~ 388 (438)
T 3o7q_A 364 QYPTIFSLGIKNLGQD-TKYGSSFIV 388 (438)
T ss_dssp HHHHHHHHHHSSCGGG-HHHHHHHHH
T ss_pred HHHHHHHHHHhhcccc-ccchhhHHH
Confidence 9999999999999866 887777655
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.00 E-value=2.9e-09 Score=84.50 Aligned_cols=97 Identities=11% Similarity=0.027 Sum_probs=77.5
Q ss_pred cccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccccchhHH
Q psy3312 85 DERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSM 164 (189)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~ 164 (189)
+....++..+...++.+++.++.|++.||+|||+++..+.++.++..++.++.++ .+.+++..++.+++.+...+..
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 333 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATS---ALEVVILKTLHMFEVPFLLVGC 333 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCS---HHHHHHHTTHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777888888899999999999999999998888887777666655544 5666677777777766666677
Q ss_pred HHHHHhhcCccchhhHHHHH
Q psy3312 165 NVILAQWVPKTERGRMGALV 184 (189)
Q Consensus 165 ~~~~~~~~~~~~r~~~~~~~ 184 (189)
..+++|.+|++.|+++.++.
T Consensus 334 ~~~~~~~~p~~~~g~~~g~~ 353 (417)
T 2cfq_A 334 FKYITSQFEVRFSATIYLVC 353 (417)
T ss_dssp HHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHH
Confidence 88999999999999998874
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.98 E-value=3e-10 Score=90.20 Aligned_cols=103 Identities=11% Similarity=0.029 Sum_probs=67.7
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHH---HHHHhhchhhHHHHHHHHHHhhc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLA---TPLAARSFGAVGILCARFIVGLG 156 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~r~l~G~~ 156 (189)
+++|+++.+.+++.+.+.++..++++++|+++||+|||+++..+.++..+.... ..+.+.. .......+.+.|++
T Consensus 36 ~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 113 (417)
T 2cfq_A 36 DINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLL--QYNILVGSIVGGIY 113 (417)
T ss_dssp TTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHH--HTTCCHHHHGGGSS
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 668999999999999999999999999999999999999999888776542211 1222110 01123455666665
Q ss_pred cccchhHHHHHHHhhcCc--cchhhHHHHH
Q psy3312 157 QGPAYPSMNVILAQWVPK--TERGRMGALV 184 (189)
Q Consensus 157 ~g~~~~~~~~~~~~~~~~--~~r~~~~~~~ 184 (189)
.+..++.......++.++ ++|+...+..
T Consensus 114 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 143 (417)
T 2cfq_A 114 LGFCFNAGAPAVEAFIEKVSRRSNFEFGRA 143 (417)
T ss_dssp TTHHHHTTHHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHHHhhhHHHHHHHHHHhhhhcccchHHH
Confidence 555444444455555443 3445444444
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.93 E-value=7.5e-10 Score=86.26 Aligned_cols=105 Identities=12% Similarity=0.013 Sum_probs=77.3
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHH-HHHHHHHHHHHh-hchhhHHHHHHHHHHhhcc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLV-STLATLATPLAA-RSFGAVGILCARFIVGLGQ 157 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~r~l~G~~~ 157 (189)
+++|.++.+.+++.+...++..++.++.+++.||++++ +..+... ...+..+..... ...+.+.+.+..++.|++.
T Consensus 228 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 305 (375)
T 2gfp_A 228 AVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGA 305 (375)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHH
Confidence 44788889999999999999999999999999999883 2333322 222222112111 0111666777888899999
Q ss_pred ccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 158 GPAYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 158 g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
+...+....++.|.+| ++|+++.++.+..
T Consensus 306 ~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~ 334 (375)
T 2gfp_A 306 GMLFPLATSGAMEPFP-FLAGTAGALVGGL 334 (375)
T ss_dssp HHTSSTTHHHHHTHHH-HHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHhCC-cccchHHHHHHHH
Confidence 9889999999999998 8999999988653
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.89 E-value=3e-09 Score=85.74 Aligned_cols=108 Identities=15% Similarity=0.042 Sum_probs=83.5
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHH-----HHHHHHHHHHHHHHHHhh------chhhHHHHH
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLG-----FGLLVSTLATLATPLAAR------SFGAVGILC 148 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~-----~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 148 (189)
+.++.+..+.+++.+...++..++.++.|++.||+|||+... .+.++.+++..+...... ..+.+.+.+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (491)
T 4aps_A 312 ERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVG 391 (491)
T ss_dssp HSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHH
T ss_pred HHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHH
Confidence 445555567788888888899999999999999999986554 677777777666665431 112667778
Q ss_pred HHHHHhhccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 149 ARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 149 ~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
..++.|++.+...+....++.|.+|+++|+++.|+.+..
T Consensus 392 ~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~ 430 (491)
T 4aps_A 392 SWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLS 430 (491)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 888999999998999999999999999999999987653
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.85 E-value=6e-08 Score=78.00 Aligned_cols=106 Identities=14% Similarity=0.090 Sum_probs=73.3
Q ss_pred eeeeccccchhHHHHHHHHHHHHhhhhhhhhhhhhCCchhHHHHHHHHHHHHHHHHHHhhch-hhHHHHHHHH--HHhhc
Q psy3312 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSF-GAVGILCARF--IVGLG 156 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~r~--l~G~~ 156 (189)
+..+.+............+...++.++.+++.||+|||+.++.+.....++.+......... ..+..++..+ ..+++
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (491)
T 4gc0_A 305 KTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFA 384 (491)
T ss_dssp HHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 45555555566666777788899999999999999999999988888877776555433211 1122222222 22222
Q ss_pred cccchhHHHHHHHhhcCccchhhHHHHHhh
Q psy3312 157 QGPAYPSMNVILAQWVPKTERGRMGALVFA 186 (189)
Q Consensus 157 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 186 (189)
. +..+....+.+|.+|++.|+++.|+.+.
T Consensus 385 ~-~~~~~~~~~~~E~fPt~~R~~~~g~~~~ 413 (491)
T 4gc0_A 385 M-SWGPVCWVLLSEIFPNAIRGKALAIAVA 413 (491)
T ss_dssp T-TTTHHHHHHHHHSSCTTTHHHHHHHHHH
T ss_pred h-HHHHHHHHHHHHhCCHhHHHHHHHHHHH
Confidence 2 2346778899999999999999998754
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.95 E-value=4.2e-06 Score=67.85 Aligned_cols=100 Identities=11% Similarity=0.060 Sum_probs=69.5
Q ss_pred chhHHHHHHHHHHHHhhhhhhhhh----hhhCC----chhHHHHHHHHHHHHHHHHHHh------hchhhHHHHHHHHHH
Q psy3312 88 TQGLILSSFFWGYVLNHIPGALIA----ERYGG----KYVLGFGLLVSTLATLATPLAA------RSFGAVGILCARFIV 153 (189)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~g~l~----dr~g~----r~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~r~l~ 153 (189)
..+++.....++..+..++.+++. ||.|+ ++.+..+.++.+++.++..+.. ...+.+.+++..++.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 415 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL 415 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence 345555555566677777777765 55543 2456677777777776666543 011266777888999
Q ss_pred hhccccchhHHHHHHHhhcCccchhhHHHHHhhc
Q psy3312 154 GLGQGPAYPSMNVILAQWVPKTERGRMGALVFAG 187 (189)
Q Consensus 154 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 187 (189)
|++.+...+....++.|.+|+++|++++|+.+..
T Consensus 416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~ 449 (524)
T 2xut_A 416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLS 449 (524)
T ss_dssp HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHH
Confidence 9999999999999999999999999999998764
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=74.69 E-value=1.2 Score=19.41 Aligned_cols=14 Identities=14% Similarity=0.278 Sum_probs=11.5
Q ss_pred hhhhhhhhhCCchh
Q psy3312 106 PGALIAERYGGKYV 119 (189)
Q Consensus 106 ~~g~l~dr~g~r~~ 119 (189)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46889999999864
No 16
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=58.51 E-value=33 Score=24.05 Aligned_cols=25 Identities=0% Similarity=0.022 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhCCc
Q psy3312 93 LSSFFWGYVLNHIPGALIAERYGGK 117 (189)
Q Consensus 93 ~~~~~~~~~~~~~~~g~l~dr~g~r 117 (189)
...|.+++.++..+.|++.||..++
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccc
Confidence 3577889999999999999997644
Done!