RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3312
(189 letters)
>gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate
cotransporter. [Transport and binding proteins,
Anions].
Length = 465
Score = 101 bits (254), Expect = 2e-25
Identities = 51/177 (28%), Positives = 84/177 (47%), Gaps = 10/177 (5%)
Query: 13 PDKPDYLISQRYLIGLLGFLAFALTYVQRFCLSMAITEM-AHTE-HKVSNKSLQCPVPVL 70
K Y S R + L + + QR CLS+ + M ++ S + + +
Sbjct: 7 STKLPYFCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNI 66
Query: 71 IRNQTVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLA 130
K+ F W QGLILSS F+G ++ IP +A +Y K+ +G G+ +S++
Sbjct: 67 -------KNPNFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVI 119
Query: 131 TLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAG 187
++ P AA A+ + C R I GL QG P+ + I+ +W P ER R+ + +G
Sbjct: 120 SIVIPWAAGGGIALVVFC-RVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSG 175
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 71.6 bits (176), Expect = 5e-15
Identities = 37/110 (33%), Positives = 56/110 (50%), Gaps = 3/110 (2%)
Query: 80 YEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAAR 139
+ GLI+S+F GY L + +++R+G + VL GLL+ L +L A+
Sbjct: 27 EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFAS- 85
Query: 140 SFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAGSY 189
+L RF++GLG G YP+ ++A+W P ERGR L AG
Sbjct: 86 --SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFG 133
Score = 35.0 bits (81), Expect = 0.016
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 4/109 (3%)
Query: 82 FDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKY-VLGFGLLVSTLATLATPLAARS 140
GL+LS F G +L + G L+++R G + +L GLL++ L L LA
Sbjct: 206 LGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSL 265
Query: 141 FGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAGSY 189
+ L ++G G G A+P++ + ++ P RG L
Sbjct: 266 ALLLVAL---LLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGS 311
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 68.6 bits (168), Expect = 5e-14
Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 3/108 (2%)
Query: 81 EFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARS 140
+ GL+L++F GY L +++R+G + VL GLL+ L L A+
Sbjct: 26 DLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSL 85
Query: 141 FGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAGS 188
+ + R + GLG G +P+ ++A W P ERGR L+ AG
Sbjct: 86 WLLLV---LRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGF 130
Score = 46.6 bits (111), Expect = 2e-06
Identities = 25/111 (22%), Positives = 46/111 (41%)
Query: 79 HYEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAA 138
GL+L + + +++R G + L LL+ LA L L +
Sbjct: 229 QEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLS 288
Query: 139 RSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAGSY 189
+ ++ +L A ++G G G +P++N +++ PK ERG L
Sbjct: 289 LTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGS 339
>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 399
Score = 68.5 bits (168), Expect = 7e-14
Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 3/109 (2%)
Query: 81 EFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARS 140
+ G + S+F WGYV+ PG + +R+G + L +++ + T A
Sbjct: 23 DLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA--- 79
Query: 141 FGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAGSY 189
V + R ++G + P +P + +I+A W P +ER ++ +
Sbjct: 80 GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQG 128
>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein.
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids].
Length = 379
Score = 58.9 bits (143), Expect = 1e-10
Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 3/94 (3%)
Query: 90 GLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCA 149
GL+LSSF Y ++ +++R + L GL++ + L S +
Sbjct: 33 GLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNL---FFGFSTSLWVMAAL 89
Query: 150 RFIVGLGQGPAYPSMNVILAQWVPKTERGRMGAL 183
+ G+ QG +P + +W ++ERG +
Sbjct: 90 WALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSF 123
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport. [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 398
Score = 49.7 bits (119), Expect = 2e-07
Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 3/107 (2%)
Query: 81 EFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARS 140
E+ D G + S+ G + +A+R G + VL + +L+ ++ TL LA
Sbjct: 46 EWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALAT-- 103
Query: 141 FGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAG 187
+L RF+ GLG G P++N +++++ PK RG L+F G
Sbjct: 104 -NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCG 149
>gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and
metabolism].
Length = 448
Score = 46.5 bits (111), Expect = 2e-06
Identities = 20/103 (19%), Positives = 45/103 (43%), Gaps = 3/103 (2%)
Query: 81 EFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARS 140
+ + G++ S+F Y ++ ++++R +Y + FGL++S + + + S
Sbjct: 58 DGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSP-S 116
Query: 141 FGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGAL 183
+L + G QG +P + W + ERG ++
Sbjct: 117 LFLFAVLW--VLNGWFQGMGWPPCARTITHWFSRKERGTWWSI 157
>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter. This model represents
the phosphate uptake symporter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Anions].
Length = 502
Score = 43.6 bits (103), Expect = 2e-05
Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 12/101 (11%)
Query: 89 QGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAA--RSFGAVGI 146
G + F+G+ +A++ G K V G L++ +AT+A+ L+ +
Sbjct: 67 IGTLAGQLFFGW---------LADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMAT 117
Query: 147 LCA-RFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFA 186
LC RF +G+G G YP +I +++ K RG M A VFA
Sbjct: 118 LCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFA 158
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 505
Score = 43.1 bits (102), Expect = 3e-05
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 12/96 (12%)
Query: 90 GLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCA 149
G++L SF +GY +++R+G K VL LV+ ++ + L A S L
Sbjct: 139 GVLLGSFVFGY---------LSDRFGRKKVLLLSTLVTAVSGV---LTAFSPNYTVFLVF 186
Query: 150 RFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVF 185
R +VG+G G + V+ +++PK +R +G L+
Sbjct: 187 RLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQ 222
>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter
MhpT; Provisional.
Length = 406
Score = 42.6 bits (101), Expect = 5e-05
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 106 PGALI----AERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAY 161
PGAL+ A+R G K +L + + L +LAT A F +L AR + G+G G A
Sbjct: 65 PGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAW-DFP--SLLVARLLTGVGLGGAL 121
Query: 162 PSMNVILAQWVPKTERGRMGALVFAG 187
P++ + ++ V RG +L++ G
Sbjct: 122 PNLIALTSEAVGPRLRGTAVSLMYCG 147
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein.
Length = 141
Score = 39.6 bits (93), Expect = 2e-04
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 90 GLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCA 149
GL+L+ + G ++ L+ +R+G K VL GL + L+T L+ + ++ A
Sbjct: 1 GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS-SNI--TVLIIA 57
Query: 150 RFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAG 187
RF+ G G A + ++A P ERG L+ AG
Sbjct: 58 RFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAG 95
>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport
and metabolism].
Length = 394
Score = 38.4 bits (90), Expect = 0.001
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 90 GLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCA 149
G +++++ G L AL+ R + +L L + ++ L + LA SF +L A
Sbjct: 51 GQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAP-SFAV--LLLA 107
Query: 150 RFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAG 187
R + GL G + + A+ VP +RGR ALVF G
Sbjct: 108 RALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTG 145
>gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily
[Carbohydrate transport and metabolism / Amino acid
transport and metabolism / Inorganic ion transport and
metabolism / General function prediction only].
Length = 338
Score = 36.2 bits (82), Expect = 0.007
Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 2/116 (1%)
Query: 75 TVNKHYEFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLAT 134
+ GL+LS+FF GY + + + +RYG + VL GLL+ L TL
Sbjct: 27 LLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLL 86
Query: 135 PLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKT-ERGRMGALVFAGSY 189
LA + G +L R + GLG G P + +L++W P+ ERG LV G+
Sbjct: 87 ALAP-NVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAG 141
>gnl|CDD|129795 TIGR00712, glpT, glycerol-3-phosphate transporter. This model
describes a very hydrophobic protein, predicted to span
the membrane at least 8 times. The two members confirmed
experimentally as glycerol-3-phosphate transporters,
from E. coli and B. subtilis, share more than 50 % amino
acid identity. Proteins of the hexose phosphate and
phosphoglycerate transport systems are also quite
similar [Transport and binding proteins, Other].
Length = 438
Score = 35.2 bits (81), Expect = 0.013
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 5/92 (5%)
Query: 90 GLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATL---ATPLAARSFGAVGI 146
G LS+ Y + +++R + L GL++S L P A S + +
Sbjct: 64 GFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFV 123
Query: 147 LCARFIVGLGQGPAYPSMNVILAQWVPKTERG 178
L F+ G QG +P + W ++ERG
Sbjct: 124 LL--FLNGWFQGMGWPPCGRTMVHWWSQSERG 153
>gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and
metabolism].
Length = 422
Score = 35.4 bits (82), Expect = 0.013
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 90 GLILSSFFWGYVLNHIPGALIAERYGGKY--VLGFGLLVSTLATLATPLAARSFGAVGIL 147
LI +FF GY + +P L+ ++ G K VLG L A AA S L
Sbjct: 51 SLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWP--AASSKSYGFFL 108
Query: 148 CARFIVGLGQG 158
A FI+ G G
Sbjct: 109 VALFILASGIG 119
>gnl|CDD|131385 TIGR02332, HpaX, 4-hydroxyphenylacetate permease. This protein is
a part of the Major Facilitator Superfamily (Pfam family
pfam07690). Member of this family are found in a number
of proteobacterial genomes, but only in the context of
having genes for 4-hydroxyphenylacetate (4-HPA)
degradation. The protein is characterized by Prieto, et
al. (PMID:9315705) as 4-hydroxyphenylacetate permease in
E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are
shown to competitively inhibit 4-HPA transport and
therefore also interact specificially.
Length = 412
Score = 34.6 bits (79), Expect = 0.020
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Query: 90 GLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCA 149
GL + F+ YV+ IP ++ G + + +++ +A+ AT A G +
Sbjct: 46 GLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFAT---GPESLYLL 102
Query: 150 RFIVGLGQGPAYPSMNVILAQWVPKTERGRMGAL 183
R +VG+ + P + + L W P R R AL
Sbjct: 103 RILVGIAEAGFLPGILLYLTFWFPAYFRARANAL 136
>gnl|CDD|183266 PRK11663, PRK11663, regulatory protein UhpC; Provisional.
Length = 434
Score = 34.7 bits (80), Expect = 0.023
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Query: 90 GLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGL----LVSTLATLATPLAARSFGAVG 145
GL+ + F+ Y ++ ++++R +Y +G GL +++ L ++ L A F +
Sbjct: 61 GLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWA--FALLW 118
Query: 146 ILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGAL 183
+L A F QG +P +L W +TERG A+
Sbjct: 119 VLNAFF-----QGWGWPVCAKLLTAWYSRTERGGWWAI 151
>gnl|CDD|182486 PRK10473, PRK10473, multidrug efflux system protein MdtL;
Provisional.
Length = 392
Score = 33.8 bits (78), Expect = 0.044
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 107 GALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAY 161
IA+R G K V G + +A+L L + + + L RF+ G+G G Y
Sbjct: 58 AGKIADRSGRKPVAIPGAALFIIASL---LCSLAETSSLFLAGRFLQGIGAGCCY 109
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 481
Score = 32.3 bits (74), Expect = 0.12
Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 12/101 (11%)
Query: 89 QGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILC 148
GL++S F G + + +++R+G K L L+ + + LAA + ++
Sbjct: 73 WGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIV 132
Query: 149 ARFIVGLGQG------PAYPSMNVILAQWVPKTERGRMGAL 183
R ++G+G G P Y L++ PK RG + +L
Sbjct: 133 GRVLLGIGVGIASALVPMY------LSEIAPKALRGALTSL 167
>gnl|CDD|233170 TIGR00886, 2A0108, nitrite extrusion protein (nitrite facilitator).
[Transport and binding proteins, Anions].
Length = 366
Score = 32.3 bits (74), Expect = 0.13
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 113 RYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWV 172
++G +Y LL+ + L LA +S+ +L R +G+ G M I + +
Sbjct: 63 KFGPRYTTTLSLLLLAIPCLWAGLAVQSYS--VLLLLRLFIGIAGGSFASCMPWI-SFFF 119
Query: 173 PKTERG 178
PK +G
Sbjct: 120 PKKIQG 125
>gnl|CDD|236889 PRK11273, glpT, sn-glycerol-3-phosphate transporter; Provisional.
Length = 452
Score = 31.6 bits (72), Expect = 0.21
Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 5/94 (5%)
Query: 90 GLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLA---TPLAARSFGAVGI 146
G LS Y + +++R + L GL+++ L P A S + +
Sbjct: 66 GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFV 125
Query: 147 LCARFIVGLGQGPAYPSMNVILAQWVPKTERGRM 180
L F+ G QG +P + W + ERG +
Sbjct: 126 LL--FLCGWFQGMGWPPCGRTMVHWWSQKERGGI 157
>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter. [Transport
and binding proteins, Carbohydrates, organic alcohols,
and acids].
Length = 405
Score = 31.4 bits (71), Expect = 0.28
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 109 LIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVIL 168
L +RYG + + +++ + TLA A G + + AR ++G+G G Y S +
Sbjct: 69 LWGDRYGRRLPMVTSIVLFSAGTLACGFAP---GYITMFIARLVIGIGMGGEYGSSAAYV 125
Query: 169 AQWVPKTERGRMGALVFAG 187
+ PK R + L+ +G
Sbjct: 126 IESWPKHLRNKASGLLISG 144
>gnl|CDD|225179 COG2270, COG2270, Permeases of the major facilitator superfamily
[General function prediction only].
Length = 438
Score = 31.1 bits (71), Expect = 0.34
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Query: 101 VLNHIPGALI----AERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLG 156
+ GA+I ER+G K VL GL++ ++A L G + +VG
Sbjct: 298 SVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAAL---YLIFLEGELDFWILGLLVGTS 354
Query: 157 QGPAYPSMNVILAQWVPKTERGR 179
G A S LA+ VPK + GR
Sbjct: 355 LGGAQASSRSYLARLVPKGKEGR 377
>gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport
and metabolism].
Length = 417
Score = 31.1 bits (71), Expect = 0.34
Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 105 IPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSM 164
+P + +R+GG+ +L+ + L A +L ++GL M
Sbjct: 67 LPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGM 126
Query: 165 NVILAQWVPKTERG 178
+ + PK ++G
Sbjct: 127 PNA-SFFFPKEKQG 139
>gnl|CDD|236564 PRK09556, uhpT, sugar phosphate antiporter; Reviewed.
Length = 467
Score = 30.8 bits (70), Expect = 0.35
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 117 KYVLGFGLLVSTLATLATPLAARSFGA-VGILCARF-IVGLGQGPAYPSMNVILAQWVPK 174
K L F L++S + L + S +G++ A + + G Q P + +W P+
Sbjct: 94 KQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPR 153
Query: 175 TERGR 179
+RGR
Sbjct: 154 RKRGR 158
>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter. This model
represents the metabolite:H+ symport subfamily of the
major facilitator superfamily (pfam00083), including
citrate-H+ symporters, dicarboxylate:H+ symporters, the
proline/glycine-betaine transporter ProP, etc [Transport
and binding proteins, Unknown substrate].
Length = 394
Score = 29.2 bits (66), Expect = 1.2
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 10/107 (9%)
Query: 91 LILSSFFWGYVLNHIPGAL---IAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGI- 146
++F G++ + + +R G K L LL+ + TL L S+ +GI
Sbjct: 36 ATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLP-SYATIGIW 94
Query: 147 -----LCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAGS 188
L AR I G G + + LA++ P +RG G+ G+
Sbjct: 95 APILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGA 141
>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional.
Length = 426
Score = 29.1 bits (65), Expect = 1.3
Identities = 19/79 (24%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 109 LIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVIL 168
L+A+++G K ++ + ++ ++ T + LA+ G + + +RFIVG+G Y +
Sbjct: 75 LLADKFGRKPLMMWSIVAYSVGTGLSGLAS---GVIMLTLSRFIVGMGMAGEYACASTYA 131
Query: 169 AQWVPKTERGRMGALVFAG 187
+ PK + + A + +G
Sbjct: 132 VESWPKHLKSKASAFLVSG 150
>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA
subfamily. This subfamily of drug efflux proteins, a
part of the major faciliator family, is predicted to
have 12 membrane-spanning regions. Members with known
activity include Bcr (bicyclomycin resistance protein)
in E. coli, Flor (chloramphenicol and florfenicol
resistance) in Salmonella typhimurium DT104, and CmlA
(chloramphenicol resistance) in Pseudomonas sp. plasmid
R1033.
Length = 385
Score = 28.5 bits (64), Expect = 1.9
Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 3/94 (3%)
Query: 91 LILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCAR 150
+ L+ + G+ + +++RYG + VL GL + L++L L S +L R
Sbjct: 44 MTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLAL---SNNIETLLVLR 100
Query: 151 FIVGLGQGPAYPSMNVILAQWVPKTERGRMGALV 184
F+ G ++ P E R+ +++
Sbjct: 101 FVQAFGASAGSVISQALVRDIYPGEELSRIYSIL 134
>gnl|CDD|149438 pfam08374, Protocadherin, Protocadherin. The structure of
protocadherins is similar to that of classic cadherins
(pfam00028), but particularly on the cytoplasmic
domains they also have some unique features. They are
expressed in a variety of organisms and are found in
high concentrations in the brain where they seem to be
localised mainly at cell-cell contact sites. Their
expression seems to be developmentally regulated.
Length = 223
Score = 28.3 bits (63), Expect = 2.0
Identities = 13/55 (23%), Positives = 25/55 (45%)
Query: 3 SIEKKQPIDIPDKPDYLISQRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHK 57
S++ DI PD S++ L ++G +A A+T + + + + E K
Sbjct: 15 SLDTPLDRDIAGDPDSERSKQRLSIMIGVVAGAMTVILVILVVVLVRYCRQAERK 69
>gnl|CDD|182260 PRK10133, PRK10133, L-fucose transporter; Provisional.
Length = 438
Score = 28.7 bits (64), Expect = 2.1
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 82 FDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTL-ATLATPLAARS 140
F GLI S+F++GY + IP ++ ++ K + GL + L A L P AA
Sbjct: 56 FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWP-AAEI 114
Query: 141 FGAVGILCARFIVGLGQG 158
L FI+ G G
Sbjct: 115 MNYTLFLVGLFIIAAGLG 132
>gnl|CDD|197289 cd09193, PLDc_mTdp1_1, Catalytic domain, repeat 1, of metazoan
tyrosyl-DNA phosphodiesterase. Catalytic domain, repeat
1, of metazoan tyrosyl-DNA phosphodiesterase (Tdp1, EC
3.1.4.-). Human Tdp1 (hTdp1) acts as an important DNA
repair enzyme with a preference for single-stranded or
blunt-ended duplex oligonucleotides. It can remove
stalled topoisomerase I-DNA complexes by catalyzing the
hydrolysis of a phosphodiester bond between a tyrosine
side chain and a DNA 3'-phosphate. It is therefore a
potential molecular target for new anti-cancer drugs.
hTdp1 has been shown to associate with additional
proteins, such as XRCC1, to form a multi-enzyme complex.
These additional proteins may be involved in recognizing
3'-phoshotyrosyl DNA in vivo. hTdp1 is a monomeric
protein containing two copies of a variant HKD motif
(H-x-K-x(4)-D, where x represents any amino acid
residue), which consists of the highly conserved
histidine and lysine residues, but lacks the aspartate
residue that is well conserved in other phospholipase D
(PLD, EC 3.1.4.4) enzymes. Like other PLD enzymes, hTdp1
may utilize a common two-step general acid/base
catalytic mechanism, involving a DNA-enzyme intermediate
to cleave phosphodiester bonds. A single active site
involved in phosphatidyl group transfer would be formed
by the two variant HKD motifs from the N- and C-terminal
domains in a pseudodimeric way.
Length = 169
Score = 28.0 bits (63), Expect = 2.4
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 80 YEFDWDERTQGLILSSFF 97
E DW+++TQG+ +S
Sbjct: 124 IEDDWEQKTQGIWISPLL 141
>gnl|CDD|173846 cd01157, MCAD, Medium chain acyl-CoA dehydrogenase. MCADs are
mitochondrial beta-oxidation enzymes, which catalyze the
alpha,beta dehydrogenation of the corresponding medium
chain acyl-CoA by FAD, which becomes reduced. The
reduced form of MCAD is reoxidized in the oxidative
half-reaction by electron-transferring flavoprotein
(ETF), from which the electrons are transferred to the
mitochondrial respiratory chain coupled with ATP
synthesis. MCAD is a homotetramer.
Length = 378
Score = 28.3 bits (63), Expect = 2.5
Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 18/85 (21%)
Query: 81 EFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARS 140
E+ W LI ++ G + HIP E GG LG G + L T +
Sbjct: 32 EYPWP-----LIKRAWELGLMNTHIP-----EDCGG---LGLGTFDTCLIT-----EELA 73
Query: 141 FGAVGILCARFIVGLGQGPAYPSMN 165
+G G+ A LGQ P S N
Sbjct: 74 YGCTGVQTAIEANSLGQMPVIISGN 98
>gnl|CDD|177665 PLN00028, PLN00028, nitrate transmembrane transporter; Provisional.
Length = 476
Score = 28.4 bits (64), Expect = 2.7
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 114 YGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFIVGLG 156
YG +Y F L+++ A L + A G + RF +G
Sbjct: 98 YGPRYGSAFLLMLTAPAVFCMSLVS---SATGFIAVRFFIGFS 137
>gnl|CDD|162098 TIGR00900, 2A0121, H+ Antiporter protein. [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 365
Score = 28.1 bits (63), Expect = 2.9
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 2/100 (2%)
Query: 90 GLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCA 149
G +L++F G +L + L+ + ++ + V LA L L +F L
Sbjct: 250 GWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNF--PLFLVL 307
Query: 150 RFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAGSY 189
F +G+G GP +L + VP GR+ F+ S+
Sbjct: 308 WFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSH 347
>gnl|CDD|182611 PRK10642, PRK10642, proline/glycine betaine transporter;
Provisional.
Length = 490
Score = 27.8 bits (62), Expect = 3.6
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 107 GALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGI------LCARFIVGLGQGPA 160
G L ++YG + +L +++ +++T L S+ +GI L + G G
Sbjct: 78 GML-GDKYGRQKILAITIVIMSISTFCIGLIP-SYATIGIWAPILLLLCKMAQGFSVGGE 135
Query: 161 YPSMNVILAQWVPKTERGRMGALVFAGS 188
Y ++ +A++ P +RG MG+ + GS
Sbjct: 136 YTGASIFVAEYSPDRKRGFMGSWLDFGS 163
>gnl|CDD|211614 TIGR00885, fucP, L-fucose:H+ symporter permease. This family
describes the L-fucose permease in bacteria.
L-fucose(6-deoxy-L-galactose) is a monosaccharide found
in glycoproteins and cell wall polysaccharides. L-fucose
is used in bacteria through an inducible pathway
mediated by atleast four enzymes: a permease, isomerase,
kinase and an aldolase which are encoded by fucP, fucI,
fucK, fucA respectively. The fuc genes belong to a
regulon comprising of four linked operons: fucO, fucA,
fucPIK and fucR. The positive regulator is encoded by
fucR, whose protein responds to fuculose-1-phosphate,
which acts as an effector [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 408
Score = 27.1 bits (60), Expect = 6.5
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 90 GLILSSFFWGYVLNHIPGALIAERYGGK--YVLGFGL 124
L+ S+F+ GY + IP A+ ++ K +LG L
Sbjct: 41 ALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFL 77
>gnl|CDD|182924 PRK11043, PRK11043, putative transporter; Provisional.
Length = 401
Score = 27.2 bits (61), Expect = 6.7
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 93 LSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCARFI 152
LS F G+ L + +++RYG K VL GL + L +L A +L RF+
Sbjct: 47 LSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLG---MLWVESAAQLLVLRFV 103
Query: 153 VGLG 156
+G
Sbjct: 104 QAVG 107
>gnl|CDD|217608 pfam03547, Mem_trans, Membrane transport protein. This family
includes auxin efflux carrier proteins and other
transporter proteins from all domains of life.
Length = 321
Score = 26.9 bits (60), Expect = 7.1
Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 6/69 (8%)
Query: 90 GLILSSFFWGYVLNHIPGALIAE--RYGGKYVLGFGLLV--STLATLATPLAARSFGAVG 145
GLIL G++L I I + G + L TLA + + A
Sbjct: 189 GLILG--LVGFLLPLIFPEFIQDSISILGDAAIPMALFSLGLTLALGKLKSSLGAATATI 246
Query: 146 ILCARFIVG 154
L R I+
Sbjct: 247 HLILRLILM 255
>gnl|CDD|235981 PRK07239, PRK07239, bifunctional uroporphyrinogen-III
synthetase/response regulator domain protein; Validated.
Length = 381
Score = 26.5 bits (59), Expect = 9.7
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 16/62 (25%)
Query: 123 GLLVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGA 182
GLL LA L T + A VG + A +V G + P ER R+GA
Sbjct: 224 GLLDQLLAALRTDVLA---ACVGPVTAAPLVRAGVPTSAP-------------ERMRLGA 267
Query: 183 LV 184
L
Sbjct: 268 LA 269
>gnl|CDD|221972 pfam13194, DUF4010, Domain of unknown function (DUF4010). This is
a family of putative membrane proteins found in archaea
and bacteria. It is sometimes found C terminal to
pfam02308.
Length = 211
Score = 26.3 bits (59), Expect = 9.7
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 120 LGFGLLVSTLATLATPLAARSFGAVGILCARFIVGL 155
L F LL + L + A FG G+ + GL
Sbjct: 129 LKFALLF-AVILLLSAAAQDWFGDAGLYALAALSGL 163
>gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter.
This subfamily belongs to the major facilitator family.
Members include the oxalate/formate antiporter of
Oxalobacter formigenes, where one substrate is
decarboxylated in the cytosol into the other to consume
a proton and drive an ion gradient [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 377
Score = 26.6 bits (59), Expect = 9.7
Identities = 20/106 (18%), Positives = 36/106 (33%), Gaps = 4/106 (3%)
Query: 82 FDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSF 141
F + + G ++ G L+A+++G + V G L L A +
Sbjct: 33 FGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLG---GILYGLGFTFYAIAD 89
Query: 142 GAVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAG 187
+ + G G AY +W P +RG ++ G
Sbjct: 90 SLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-KRGLASGIIIGG 134
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.141 0.436
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,852,996
Number of extensions: 918437
Number of successful extensions: 1303
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1277
Number of HSP's successfully gapped: 86
Length of query: 189
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 98
Effective length of database: 6,901,388
Effective search space: 676336024
Effective search space used: 676336024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.2 bits)