RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3312
(189 letters)
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane,
major facilitator superfamily, secondary active membrane
transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Length = 451
Score = 104 bits (261), Expect = 8e-27
Identities = 27/168 (16%), Positives = 55/168 (32%), Gaps = 29/168 (17%)
Query: 23 RYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEF 82
R+ I L F +A Y+ R ++A+ + E
Sbjct: 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLV----------------------------EQ 57
Query: 83 DWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFG 142
+ G LS Y + +++R + L GL+++ L +
Sbjct: 58 GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATS 117
Query: 143 AVGILCA-RFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAGSY 189
++ ++ F+ G QG +P + W + ERG + ++
Sbjct: 118 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHN 165
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei
transport protein; HET: BNG; 3.14A {Escherichia coli}
PDB: 3o7p_A*
Length = 438
Score = 46.1 bits (109), Expect = 2e-06
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 2/88 (2%)
Query: 73 NQTVNKHY--EFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLA 130
N + + F GLI S+F++GY + IP ++ ++ K + GL + L
Sbjct: 45 NDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALG 104
Query: 131 TLATPLAARSFGAVGILCARFIVGLGQG 158
AA L FI+ G G
Sbjct: 105 AALFWPAAEIMNYTLFLVGLFIIAAGLG 132
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 0.64
Identities = 31/165 (18%), Positives = 47/165 (28%), Gaps = 60/165 (36%)
Query: 21 SQRYLIGLLGFLA----FALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTV 76
S+R L FL F + + ++ + K +Q PV
Sbjct: 410 SERKLKFSNRFLPVASPFHSHLLVP-ASDLINKDLVKNNVSFNAKDIQIPV--------- 459
Query: 77 NKHYE-FDW-DERT-QGLILSSFF---------WGYVLNHIPGALIAERYGGKYVLGFGL 124
Y+ FD D R G I W ++ ++L FG
Sbjct: 460 ---YDTFDGSDLRVLSGSISERIVDCIIRLPVKW-------ETTT---QFKATHILDFG- 505
Query: 125 LVSTLATLATPLAARSFGAVGILCARFIVGLGQGPAYPSMNVILA 169
P A +G+L R G G + VI+A
Sbjct: 506 ----------PGGA---SGLGVLTHRNKDGTG-------VRVIVA 530
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.1 bits (64), Expect = 1.1
Identities = 34/177 (19%), Positives = 54/177 (30%), Gaps = 47/177 (26%)
Query: 1 MDSIEKKQPID-IPDKPDYLISQRYLIGLLGFLAFALTYVQRFCLSMA------ITEMAH 53
SI K+ ID I D + L L L+ VQ+F + +
Sbjct: 42 PKSILSKEEIDHIIMSKDAVSGTLRLFWTL--LSKQEEMVQKFVEEVLRINYKFLMSPIK 99
Query: 54 TEHKVSNKSLQCPVPVLIRNQTVNKHYEFD---------WDERTQGLILSSFFWGYVLNH 104
TE + S+ + + R++ N + F + + Q L L
Sbjct: 100 TEQR--QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL--------LELRP 149
Query: 105 IPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCAR----FIVGLGQ 157
LI G VLG G + +A S+ + C F + L
Sbjct: 150 AKNVLI---DG---VLGSG--KTWVAL----DVCLSY---KVQCKMDFKIFWLNLKN 191
Score = 28.7 bits (63), Expect = 1.4
Identities = 14/68 (20%), Positives = 21/68 (30%), Gaps = 7/68 (10%)
Query: 77 NKHYEFDWDERTQGLILSSFFW--GYVLNHIPGALIAERYGG--KYVLGFGLLVSTLATL 132
N FD D+ + F+ G+ H+ ER L F L +
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGH---HLKNIEHPERMTLFRMVFLDFRFLEQKIRHD 510
Query: 133 ATPLAARS 140
+T A
Sbjct: 511 STAWNASG 518
Score = 27.5 bits (60), Expect = 3.0
Identities = 16/101 (15%), Positives = 26/101 (25%), Gaps = 29/101 (28%)
Query: 58 VSNKS------LQCPVPVLIRNQTV------NKHYEFDWDERTQGL-------ILSSFFW 98
V N L C + + R + V D + L +L +
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-- 310
Query: 99 GYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAAR 139
L+ P L E + +S +A A
Sbjct: 311 ---LDCRPQDLPREV-----LTTNPRRLSIIAESIRDGLAT 343
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug
transporter; 3.50A {Escherichia coli}
Length = 375
Score = 28.0 bits (63), Expect = 1.8
Identities = 14/66 (21%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 91 LILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFGAVGILCAR 150
++ ++ Y ++ + I++R G + V+ G+ + LATL + S ++ A
Sbjct: 39 SVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS-SLTV--LIAAS 95
Query: 151 FIVGLG 156
+ G+G
Sbjct: 96 AMQGMG 101
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel,
alpha+beta, riken structural genomics/proteomics
initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata}
PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Length = 548
Score = 26.8 bits (60), Expect = 5.6
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 110 IAERYGGKYVL-GFGLLVSTLATLATPLAARSFGAVGIL 147
+A R+ V G+GL +T A + TP GA G +
Sbjct: 329 VARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKV 367
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase,
photoprotein, luminescence, aspulvinone, natural product
extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A
1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A
Length = 550
Score = 26.8 bits (60), Expect = 5.8
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 110 IAERYGGKYVL-GFGLLVSTLATLATPLAARSFGAVGIL 147
+A+R+ + G+GL +T A L TP GAVG +
Sbjct: 327 VAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKV 365
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.141 0.436
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,882,098
Number of extensions: 161874
Number of successful extensions: 332
Number of sequences better than 10.0: 1
Number of HSP's gapped: 329
Number of HSP's successfully gapped: 20
Length of query: 189
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 101
Effective length of database: 4,244,745
Effective search space: 428719245
Effective search space used: 428719245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (24.7 bits)