RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3312
         (189 letters)



>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
           coli [TaxId: 562]}
          Length = 447

 Score = 59.3 bits (142), Expect = 2e-11
 Identities = 27/161 (16%), Positives = 54/161 (33%), Gaps = 29/161 (18%)

Query: 23  RYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKSLQCPVPVLIRNQTVNKHYEF 82
           R+ I L  F  +A  Y+ R   ++A+  +                             E 
Sbjct: 23  RWQIFLGIFFGYAAYYLVRKNFALAMPYLV----------------------------EQ 54

Query: 83  DWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARSFG 142
            +     G  LS     Y  +      +++R   +  L  GL+++    L       +  
Sbjct: 55  GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATS 114

Query: 143 AVGILCA-RFIVGLGQGPAYPSMNVILAQWVPKTERGRMGA 182
           ++ ++    F+ G  QG  +P     +  W  + ERG + +
Sbjct: 115 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVS 155


>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
           562]}
          Length = 417

 Score = 34.7 bits (78), Expect = 0.004
 Identities = 13/110 (11%), Positives = 35/110 (31%), Gaps = 1/110 (0%)

Query: 81  EFDWDERTQGLILSSFFWGYVLNHIPGALIAERYGGKYVLGFGLLVSTLATLATPLAARS 140
                +   G+I ++     +L      L++++ G +  L + +    +      +    
Sbjct: 37  INHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFG 96

Query: 141 FG-AVGILCARFIVGLGQGPAYPSMNVILAQWVPKTERGRMGALVFAGSY 189
                 IL    + G+  G  + +    +  ++ K  R        A  +
Sbjct: 97  PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMF 146


>d2cqla1 d.141.1.1 (A:1-87) Ribosomal protein L6 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 87

 Score = 24.9 bits (54), Expect = 2.5
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 1  MDSIEKKQPIDIPDKPDYLISQRYLI--GLLGFLAFALTYV 39
          M +I   Q +DIP+  D  +  R +I  G  G L     ++
Sbjct: 1  MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHI 41


>d1scfa_ a.26.1.2 (A:) Stem cell factor, SCF {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 131

 Score = 24.4 bits (53), Expect = 5.7
 Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 5/52 (9%)

Query: 11 DIPDKPDYLISQRYLIGLLGFLAFALTYVQRFCLSMAITEMAHTEHKVSNKS 62
          ++P   DY+I+ +Y+ G+    +          LS ++T++     K SN S
Sbjct: 11 NLPK--DYMITLKYVPGMDVLPSHCWISEMVVQLSDSLTDLL---DKFSNIS 57


>d1jy1a1 d.136.1.3 (A:145-350) Tyrosyl-DNA phosphodiesterase TDP1
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 206

 Score = 24.5 bits (53), Expect = 9.3
 Identities = 7/19 (36%), Positives = 11/19 (57%)

Query: 80  YEFDWDERTQGLILSSFFW 98
              DW ++TQG+ LS  + 
Sbjct: 141 IHADWHQKTQGIWLSPLYP 159


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.141    0.436 

Gapped
Lambda     K      H
   0.267   0.0599    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 688,906
Number of extensions: 29189
Number of successful extensions: 82
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 6
Length of query: 189
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 109
Effective length of database: 1,309,196
Effective search space: 142702364
Effective search space used: 142702364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.3 bits)