Query psy3313
Match_columns 135
No_of_seqs 108 out of 1050
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 21:48:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3313.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3313hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5022 Myosin heavy chain [Cy 100.0 3.6E-33 7.9E-38 252.1 5.6 118 5-122 407-531 (1463)
2 PTZ00014 myosin-A; Provisional 100.0 6.7E-33 1.4E-37 245.3 6.5 116 5-120 441-562 (821)
3 cd01381 MYSc_type_VII Myosin m 100.0 1.3E-32 2.8E-37 239.8 7.6 110 2-119 349-461 (671)
4 cd01383 MYSc_type_VIII Myosin 100.0 1.1E-32 2.5E-37 240.2 6.8 112 2-121 352-466 (677)
5 cd01382 MYSc_type_VI Myosin mo 100.0 1.6E-32 3.6E-37 240.5 6.7 112 2-121 386-498 (717)
6 cd01384 MYSc_type_XI Myosin mo 100.0 2.1E-32 4.6E-37 238.5 6.9 112 2-121 355-468 (674)
7 cd01387 MYSc_type_XV Myosin mo 100.0 2.7E-32 5.8E-37 238.0 7.3 110 2-119 350-460 (677)
8 cd01378 MYSc_type_I Myosin mot 100.0 3.7E-32 7.9E-37 237.1 7.3 113 2-122 353-470 (674)
9 cd01379 MYSc_type_III Myosin m 100.0 3.9E-32 8.4E-37 236.2 6.5 112 2-121 356-474 (653)
10 cd01385 MYSc_type_IX Myosin mo 100.0 5.6E-32 1.2E-36 236.4 6.6 112 2-121 361-478 (692)
11 cd01377 MYSc_type_II Myosin mo 100.0 8.5E-32 1.8E-36 235.4 7.0 113 2-122 362-477 (693)
12 cd01380 MYSc_type_V Myosin mot 100.0 1.1E-31 2.3E-36 234.7 7.2 112 2-122 353-469 (691)
13 smart00242 MYSc Myosin. Large 100.0 2.8E-31 6E-36 231.8 6.5 112 2-121 357-470 (677)
14 cd00124 MYSc Myosin motor doma 100.0 1.1E-30 2.4E-35 228.2 7.0 112 2-121 350-463 (679)
15 PF00063 Myosin_head: Myosin h 100.0 2.7E-30 5.8E-35 225.7 3.8 112 2-121 351-466 (689)
16 cd01386 MYSc_type_XVIII Myosin 100.0 9E-30 1.9E-34 224.4 6.7 112 2-121 361-495 (767)
17 KOG0164|consensus 100.0 1.7E-29 3.8E-34 217.0 2.1 117 4-120 348-476 (1001)
18 KOG0161|consensus 99.9 7.6E-29 1.6E-33 231.0 5.4 113 10-131 445-559 (1930)
19 KOG0160|consensus 99.9 3.9E-25 8.5E-30 195.0 6.1 115 5-121 346-468 (862)
20 KOG0163|consensus 99.9 1.1E-24 2.4E-29 188.5 6.6 114 4-117 430-548 (1259)
21 KOG0162|consensus 99.9 1.2E-22 2.7E-27 175.4 2.3 115 4-118 360-486 (1106)
22 KOG4229|consensus 99.8 8.9E-22 1.9E-26 177.1 4.5 113 5-117 404-524 (1062)
23 COG0218 Predicted GTPase [Gene 22.8 45 0.00097 25.6 1.1 18 11-34 68-85 (200)
No 1
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=99.97 E-value=3.6e-33 Score=252.09 Aligned_cols=118 Identities=38% Similarity=0.624 Sum_probs=101.3
Q ss_pred cccccCCCCceEeecCCCCccc-----cccccccc-ccchhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhcCceeeeeec
Q psy3313 5 KRCYFGVTPAVKVLTFGHRTRN-----LLYGKQAW-CHSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF 78 (135)
Q Consensus 5 ~~~~~~~~~~i~i~d~pg~~~~-----~i~Gfe~~-~N~feqlciN~~nE~Lq~~~~~~~f~~~~~ey~~Egi~~~~i~~ 78 (135)
+|+-|.|.+||+.+|.|+...+ +|||||++ .||||||||||+||+|||+|++|+|..||++|.+|||+|.+|+|
T Consensus 407 ~lFdwiV~rIN~sL~~~~~~~~fIGVLDIyGFEiFEkNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE~IeW~~Idy 486 (1463)
T COG5022 407 NLFDWIVDRINKSLDHSAAASNFIGVLDIYGFEIFEKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDY 486 (1463)
T ss_pred HHHHHHHHHHHhhccCccccccceeEEeecchhhhccCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCccccccc
Confidence 3445555555555555553111 36999999 99999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHhc-CCCcccccchhhhccCCCCCcchhhhhhhCCC
Q psy3313 79 SDNTLCLQLVEG-KPNGLLCVLDDQANWSRGNPMVSCVFWMIKPT 122 (135)
Q Consensus 79 ~dn~~~ldLi~~-~p~GllslLDee~~~pk~td~tf~~~~~~~~~ 122 (135)
.||++||||||+ .|.|||++|||||.+|.|||++|.+++.+...
T Consensus 487 ~DnQ~~IDLIE~~~p~GIlslLDEE~~~p~atd~s~~sKL~~~l~ 531 (1463)
T COG5022 487 FDNQPCIDLIEKKNPLGILSLLDEECVMPHATDESFTSKLAQRLN 531 (1463)
T ss_pred ccCcchhHHHhccCCCchHhhhcHHhcCCCCCchHHHHHHHHHhc
Confidence 999999999996 37899999999999999999999998776654
No 2
>PTZ00014 myosin-A; Provisional
Probab=99.97 E-value=6.7e-33 Score=245.33 Aligned_cols=116 Identities=26% Similarity=0.318 Sum_probs=99.0
Q ss_pred cccccCCCCceEeecCCCCccc-----cccccccc-ccchhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhcCceeeeeec
Q psy3313 5 KRCYFGVTPAVKVLTFGHRTRN-----LLYGKQAW-CHSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF 78 (135)
Q Consensus 5 ~~~~~~~~~~i~i~d~pg~~~~-----~i~Gfe~~-~N~feqlciN~~nE~Lq~~~~~~~f~~~~~ey~~Egi~~~~i~~ 78 (135)
||+.|.|.++|..+..++.... +|||||.+ .|||||||||||||+||++|++++|..++++|.+|||+|..++|
T Consensus 441 rLF~wiV~~IN~~l~~~~~~~~~IGiLDI~GFE~f~~NSfEQLcINy~NEkLQq~F~~~vF~~EqeeY~~EgI~~~~i~f 520 (821)
T PTZ00014 441 KLFLWIIRNLNATIEPPGGFKVFIGMLDIFGFEVFKNNSLEQLFINITNEMLQKNFVDIVFERESKLYKDEGISTEELEY 520 (821)
T ss_pred HHHHHHHHHHHHHhcCCcccCceEEEEecccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCC
Confidence 3444445555555544432111 25779998 99999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHhcCCCcccccchhhhccCCCCCcchhhhhhhC
Q psy3313 79 SDNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVFWMIK 120 (135)
Q Consensus 79 ~dn~~~ldLi~~~p~GllslLDee~~~pk~td~tf~~~~~~~ 120 (135)
.||++|||||++||.|||++|||||++|++||++|++++...
T Consensus 521 ~dN~~~idLie~k~~GIl~lLDEec~~p~~tD~~f~~kl~~~ 562 (821)
T PTZ00014 521 TSNESVIDLLCGKGKSVLSILEDQCLAPGGTDEKFVSSCNTN 562 (821)
T ss_pred CCcHHHHHHHhcCCccHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987654
No 3
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=99.97 E-value=1.3e-32 Score=239.84 Aligned_cols=110 Identities=38% Similarity=0.652 Sum_probs=97.9
Q ss_pred cccccccc--CCCCceEeecCCCCccccccccccc-ccchhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhcCceeeeeec
Q psy3313 2 ITQKRCYF--GVTPAVKVLTFGHRTRNLLYGKQAW-CHSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF 78 (135)
Q Consensus 2 ~~~~~~~~--~~~~~i~i~d~pg~~~~~i~Gfe~~-~N~feqlciN~~nE~Lq~~~~~~~f~~~~~ey~~Egi~~~~i~~ 78 (135)
||+.++.+ .....|+|+|. ||||.+ .|+|||||||||||+||++|++++|..++++|.+|||+|..++|
T Consensus 349 IN~~l~~~~~~~~~~IgiLDI--------fGFE~f~~NsfEQLcINy~NEkLQ~~f~~~vf~~eq~eY~~EgI~~~~i~f 420 (671)
T cd01381 349 INAAIYKPVQQSRNSIGVLDI--------FGFENFDVNSFEQLCINFANENLQQFFVQHIFKLEQEEYNLEHINWQHIEF 420 (671)
T ss_pred HHHHhcCccccccceEEEEec--------CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccCc
Confidence 45555543 33455666665 669998 99999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHhcCCCcccccchhhhccCCCCCcchhhhhhh
Q psy3313 79 SDNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVFWMI 119 (135)
Q Consensus 79 ~dn~~~ldLi~~~p~GllslLDee~~~pk~td~tf~~~~~~ 119 (135)
.||++|||||+++|.|||++|||||++|++||++|++++..
T Consensus 421 ~dN~~~ldLie~kp~Gil~lLDee~~~p~~td~~f~~kl~~ 461 (671)
T cd01381 421 VDNQDALDLIAIKPLNIMSLIDEESKFPKGTDQTMLEKLHS 461 (671)
T ss_pred cCcHHHHHHHhcCCCCcceechHhhcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999997754
No 4
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=99.97 E-value=1.1e-32 Score=240.25 Aligned_cols=112 Identities=39% Similarity=0.693 Sum_probs=99.9
Q ss_pred cccccccc--CCCCceEeecCCCCccccccccccc-ccchhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhcCceeeeeec
Q psy3313 2 ITQKRCYF--GVTPAVKVLTFGHRTRNLLYGKQAW-CHSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF 78 (135)
Q Consensus 2 ~~~~~~~~--~~~~~i~i~d~pg~~~~~i~Gfe~~-~N~feqlciN~~nE~Lq~~~~~~~f~~~~~ey~~Egi~~~~i~~ 78 (135)
||+.|+.. .....|+|+|. ||||.+ .|||||||||||||+||++|++++|..++++|.+|||+|..|+|
T Consensus 352 IN~~l~~~~~~~~~~IgiLDI--------~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~vF~~EqeeY~~EgI~~~~i~f 423 (677)
T cd01383 352 INKSLEVGKRRTGRSISILDI--------YGFESFDKNSFEQFCINYANERLQQHFNRHLFKLEQEEYEEDGIDWTKVEF 423 (677)
T ss_pred HHHHhcCCcccccceEEEeec--------cccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccC
Confidence 45555554 23456666666 559998 99999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHhcCCCcccccchhhhccCCCCCcchhhhhhhCC
Q psy3313 79 SDNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVFWMIKP 121 (135)
Q Consensus 79 ~dn~~~ldLi~~~p~GllslLDee~~~pk~td~tf~~~~~~~~ 121 (135)
.||++|||||+++|.|||++|||||++|++||++|++++.++.
T Consensus 424 ~dN~~~ldLie~kp~Gil~lLdee~~~p~~tD~~f~~kl~~~~ 466 (677)
T cd01383 424 EDNQECLDLFEKKPLGLLSLLDEESTFPNATDLTFANKLKQHL 466 (677)
T ss_pred CCcHHHHHHHhcCCccHHHHhHHHHcCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999887654
No 5
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=99.97 E-value=1.6e-32 Score=240.55 Aligned_cols=112 Identities=32% Similarity=0.525 Sum_probs=102.7
Q ss_pred ccccccccCCCCceEeecCCCCccccccccccc-ccchhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhcCceeeeeecCC
Q psy3313 2 ITQKRCYFGVTPAVKVLTFGHRTRNLLYGKQAW-CHSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSD 80 (135)
Q Consensus 2 ~~~~~~~~~~~~~i~i~d~pg~~~~~i~Gfe~~-~N~feqlciN~~nE~Lq~~~~~~~f~~~~~ey~~Egi~~~~i~~~d 80 (135)
||+.++.+.....|.|+|. ||||.+ .|+|||||||||||+||++|++++|..++++|.+|||+|..++|.|
T Consensus 386 IN~~l~~~~~~~~IgiLDI--------fGFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~D 457 (717)
T cd01382 386 VNQCFPFETSSNFIGVLDI--------AGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVD 457 (717)
T ss_pred HHHhcCCCCCCcEEEEEec--------cccccCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccc
Confidence 6777777666777888886 559998 8999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcCCCcccccchhhhccCCCCCcchhhhhhhCC
Q psy3313 81 NTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVFWMIKP 121 (135)
Q Consensus 81 n~~~ldLi~~~p~GllslLDee~~~pk~td~tf~~~~~~~~ 121 (135)
|++|+|||++||.|||++|||||++|++||++|++++....
T Consensus 458 N~~~ldLie~k~~Gil~lLDee~~~p~~tD~~f~~kl~~~~ 498 (717)
T cd01382 458 NQDCIDLIEAKLNGILDILDEENRLPQPSDQHFTSVVHQKH 498 (717)
T ss_pred cHHHHHHHhcCCccHHHHhHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999776543
No 6
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=99.97 E-value=2.1e-32 Score=238.45 Aligned_cols=112 Identities=39% Similarity=0.603 Sum_probs=100.8
Q ss_pred cccccccc-CCCCceEeecCCCCccccccccccc-ccchhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhcCceeeeeecC
Q psy3313 2 ITQKRCYF-GVTPAVKVLTFGHRTRNLLYGKQAW-CHSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS 79 (135)
Q Consensus 2 ~~~~~~~~-~~~~~i~i~d~pg~~~~~i~Gfe~~-~N~feqlciN~~nE~Lq~~~~~~~f~~~~~ey~~Egi~~~~i~~~ 79 (135)
||+.++.+ .-+..|+|+|. ||||.+ .|+|||||||||||+||++|++++|..++++|.+|||+|..++|.
T Consensus 355 iN~~l~~~~~~~~~IgiLDI--------~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~eq~eY~~EgI~~~~i~~~ 426 (674)
T cd01384 355 INSSIGQDPDSKSLIGVLDI--------YGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFV 426 (674)
T ss_pred HHHHhcCCCCCCeEEEEEec--------ccccccCcCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccCC
Confidence 56666655 34566777776 559998 899999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhcCCCcccccchhhhccCCCCCcchhhhhhhCC
Q psy3313 80 DNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVFWMIKP 121 (135)
Q Consensus 80 dn~~~ldLi~~~p~GllslLDee~~~pk~td~tf~~~~~~~~ 121 (135)
||++|+|||+++|.|||++|||||++|++||++|++++..+-
T Consensus 427 DN~~~ldLie~~~~Gil~lLdee~~~p~~td~~f~~kl~~~~ 468 (674)
T cd01384 427 DNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTF 468 (674)
T ss_pred ChHHHHHHHhcCCccHHHHHHHHHcCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999876654
No 7
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=99.97 E-value=2.7e-32 Score=238.01 Aligned_cols=110 Identities=40% Similarity=0.617 Sum_probs=98.1
Q ss_pred ccccccccCCCCceEeecCCCCccccccccccc-ccchhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhcCceeeeeecCC
Q psy3313 2 ITQKRCYFGVTPAVKVLTFGHRTRNLLYGKQAW-CHSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSD 80 (135)
Q Consensus 2 ~~~~~~~~~~~~~i~i~d~pg~~~~~i~Gfe~~-~N~feqlciN~~nE~Lq~~~~~~~f~~~~~ey~~Egi~~~~i~~~d 80 (135)
||+.++...-+..|.|+|. ||||.+ .|||||||||||||+||++|++++|..++++|.+|||+|..++|.|
T Consensus 350 iN~~l~~~~~~~~IgILDI--------fGFE~f~~NsfEQLcINyaNEkLQ~~f~~~vF~~eq~eY~~EgI~~~~i~f~d 421 (677)
T cd01387 350 VNALVSPTQDTLSIAILDI--------YGFEDLSFNSFEQLCINYANENLQYLFNKIVFQEEQEEYIREQLDWTEIAFAD 421 (677)
T ss_pred HHHhcCCCCCCceEEEEec--------CccccCCCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCcCC
Confidence 4555554433455666665 569998 9999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcCCCcccccchhhhccCCCCCcchhhhhhh
Q psy3313 81 NTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVFWMI 119 (135)
Q Consensus 81 n~~~ldLi~~~p~GllslLDee~~~pk~td~tf~~~~~~ 119 (135)
|++|+|||+++|.|||++|||||++|++||++|++++..
T Consensus 422 N~~~ldLi~~kp~Gil~lLdee~~~p~~td~~~~~kl~~ 460 (677)
T cd01387 422 NQPVINLISLKPYGILRILDDQCCFPQATDHTFLQKCHY 460 (677)
T ss_pred hHHHHHHHhcCCCchHHHHHHHhcCCCCchHHHHHHHHH
Confidence 999999999999999999999999999999999997754
No 8
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=99.97 E-value=3.7e-32 Score=237.12 Aligned_cols=113 Identities=36% Similarity=0.592 Sum_probs=102.3
Q ss_pred cccccccc--CCCCceEeecCCCCccccccccccc-ccchhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhcCceeeeeec
Q psy3313 2 ITQKRCYF--GVTPAVKVLTFGHRTRNLLYGKQAW-CHSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF 78 (135)
Q Consensus 2 ~~~~~~~~--~~~~~i~i~d~pg~~~~~i~Gfe~~-~N~feqlciN~~nE~Lq~~~~~~~f~~~~~ey~~Egi~~~~i~~ 78 (135)
||+.|+.. ..+..|+|+|. ||||.+ .|+|||||||||||+||++|++++|..++++|.+|||+|..++|
T Consensus 353 IN~~l~~~~~~~~~~IgILDI--------fGFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~~Y~~EgI~~~~i~f 424 (674)
T cd01378 353 INKALQVKSPGKNKVIGVLDI--------YGFEIFQKNSFEQFCINYVNEKLQQIFIELTLKAEQEEYVREGIKWTPIEY 424 (674)
T ss_pred HHHHhcCCcccCcceEEEEec--------ccccccccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCc
Confidence 56677663 55667777777 559998 89999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHhc-CCCcccccchhhhccC-CCCCcchhhhhhhCCC
Q psy3313 79 SDNTLCLQLVEG-KPNGLLCVLDDQANWS-RGNPMVSCVFWMIKPT 122 (135)
Q Consensus 79 ~dn~~~ldLi~~-~p~GllslLDee~~~p-k~td~tf~~~~~~~~~ 122 (135)
.||++|+|||++ +|.|||++|||||++| ++||++|++++.....
T Consensus 425 ~DN~~~ldLie~~~~~Gil~lLdee~~~p~~~tD~~~~~kl~~~~~ 470 (674)
T cd01378 425 FNNKIVCDLIEGKRPPGIFSILDDVCATPHEGTDQTFLEKLNKKFS 470 (674)
T ss_pred CChHHHHHHHhcCCCcchHHHHHHHHcCCCCCChHHHHHHHHHHhc
Confidence 999999999999 8999999999999999 9999999998887543
No 9
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=99.97 E-value=3.9e-32 Score=236.19 Aligned_cols=112 Identities=37% Similarity=0.576 Sum_probs=99.6
Q ss_pred ccccccccC------CCCceEeecCCCCccccccccccc-ccchhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhcCceee
Q psy3313 2 ITQKRCYFG------VTPAVKVLTFGHRTRNLLYGKQAW-CHSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWR 74 (135)
Q Consensus 2 ~~~~~~~~~------~~~~i~i~d~pg~~~~~i~Gfe~~-~N~feqlciN~~nE~Lq~~~~~~~f~~~~~ey~~Egi~~~ 74 (135)
||+.|+.+. ....|+|+|. ||||.+ .|+|||||||||||+||++|++++|..++++|.+|||+|.
T Consensus 356 IN~~l~~~~~~~~~~~~~~IgiLDI--------~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~vf~~Eq~eY~~EgI~~~ 427 (653)
T cd01379 356 INSLLKHDRNASNSSDQLNVGILDI--------FGFENFKKNSFEQLCINIANEQIQYYFNQHIFAWEQQEYLNEGVDAR 427 (653)
T ss_pred HHHHhccccccccccccceEEEEec--------cccccCCCCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 566666542 2456666666 559998 8999999999999999999999999999999999999999
Q ss_pred eeecCChHHHHHHHhcCCCcccccchhhhccCCCCCcchhhhhhhCC
Q psy3313 75 HIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVFWMIKP 121 (135)
Q Consensus 75 ~i~~~dn~~~ldLi~~~p~GllslLDee~~~pk~td~tf~~~~~~~~ 121 (135)
.++|.||++|||||++||.|||++|||||++|++||++|++++..+.
T Consensus 428 ~i~~~dN~~~ldli~~kp~Gil~lLdee~~~~~~td~~~~~kl~~~~ 474 (653)
T cd01379 428 LVEYEDNRPLLDMFLQKPLGLLALLDEESRFPQATDQTLVEKFEDNL 474 (653)
T ss_pred CCCCCCcHHHHHhHccCCCcHHHHHHHHhcCCCCCHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999886543
No 10
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=99.97 E-value=5.6e-32 Score=236.44 Aligned_cols=112 Identities=44% Similarity=0.762 Sum_probs=99.8
Q ss_pred cccccccc----CCCCceEeecCCCCccccccccccc-c-cchhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhcCceeee
Q psy3313 2 ITQKRCYF----GVTPAVKVLTFGHRTRNLLYGKQAW-C-HSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRH 75 (135)
Q Consensus 2 ~~~~~~~~----~~~~~i~i~d~pg~~~~~i~Gfe~~-~-N~feqlciN~~nE~Lq~~~~~~~f~~~~~ey~~Egi~~~~ 75 (135)
||+.|+.. .....|+|+|. ||||.+ . |+|||||||||||+||++|++++|..++++|.+|||+|..
T Consensus 361 IN~~l~~~~~~~~~~~~IgiLDI--------~GFE~f~~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~ 432 (692)
T cd01385 361 INHALLNKDDVAVSGLSIGVLDI--------FGFEDFGRCNSFEQLCINYANEQLQYYFNQHIFKLEQEEYQGEGITWTN 432 (692)
T ss_pred HHHHhcccccccccceEEEEEec--------CccccCCCCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 56666643 23466777777 559998 6 9999999999999999999999999999999999999999
Q ss_pred eecCChHHHHHHHhcCCCcccccchhhhccCCCCCcchhhhhhhCC
Q psy3313 76 IEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVFWMIKP 121 (135)
Q Consensus 76 i~~~dn~~~ldLi~~~p~GllslLDee~~~pk~td~tf~~~~~~~~ 121 (135)
|+|.||++|||||++||.|||++|||||++|++||++|++++..+-
T Consensus 433 i~f~dN~~~ldLie~k~~Gil~lLdee~~~p~~td~~~l~kl~~~~ 478 (692)
T cd01385 433 IEYTDNVGCIQLFSKKPTGLLYLLDEESNFPHATSQTLLAKFNQQH 478 (692)
T ss_pred ccCCCcHHHHHHHhcCCccHHHHhHHHhcCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999998766643
No 11
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=99.97 E-value=8.5e-32 Score=235.40 Aligned_cols=113 Identities=35% Similarity=0.578 Sum_probs=102.1
Q ss_pred cccccccc-CCCCceEeecCCCCccccccccccc-ccchhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhcCceeeeeec-
Q psy3313 2 ITQKRCYF-GVTPAVKVLTFGHRTRNLLYGKQAW-CHSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF- 78 (135)
Q Consensus 2 ~~~~~~~~-~~~~~i~i~d~pg~~~~~i~Gfe~~-~N~feqlciN~~nE~Lq~~~~~~~f~~~~~ey~~Egi~~~~i~~- 78 (135)
||+.|+.. .....|.|||. ||||.+ .|+|||||||||||+||++|++++|..++++|.+|||+|..++|
T Consensus 362 IN~~l~~~~~~~~~IgiLDI--------fGFE~f~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~ 433 (693)
T cd01377 362 INKTLDTKQQRAYFIGVLDI--------AGFEIFDFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFG 433 (693)
T ss_pred HHHHhCCCCCCCceEEEEec--------ccccccCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccC
Confidence 56777666 55677777777 559998 99999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHhcCCCcccccchhhhccCCCCCcchhhhhhhCCC
Q psy3313 79 SDNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVFWMIKPT 122 (135)
Q Consensus 79 ~dn~~~ldLi~~~p~GllslLDee~~~pk~td~tf~~~~~~~~~ 122 (135)
.||++|||||+++|.|||++|||||++|++||++|++++.....
T Consensus 434 ~dn~~~ldLie~~~~Gil~lLdee~~~~~~tD~~~~~kl~~~~~ 477 (693)
T cd01377 434 LDLQPTIDLIEKNPMGILSLLDEECVFPKATDKTFVEKLYDNHL 477 (693)
T ss_pred CCcHHHHHHHhcCCCchHhhhhHHhcCCCCCHHHHHHHHHHHhc
Confidence 59999999999999999999999999999999999998875443
No 12
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=99.97 E-value=1.1e-31 Score=234.74 Aligned_cols=112 Identities=43% Similarity=0.668 Sum_probs=100.1
Q ss_pred cccccccc----CCCCceEeecCCCCccccccccccc-ccchhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhcCceeeee
Q psy3313 2 ITQKRCYF----GVTPAVKVLTFGHRTRNLLYGKQAW-CHSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHI 76 (135)
Q Consensus 2 ~~~~~~~~----~~~~~i~i~d~pg~~~~~i~Gfe~~-~N~feqlciN~~nE~Lq~~~~~~~f~~~~~ey~~Egi~~~~i 76 (135)
||+.++.. .....|+|+|. ||||.+ .|+|||||||||||+||++|++++|..++++|.+|||+|..+
T Consensus 353 iN~~l~~~~~~~~~~~~IgiLDI--------~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~iF~~eq~~Y~~EgI~~~~i 424 (691)
T cd01380 353 INKSLNTGEVKKKQTSFIGVLDI--------YGFETFEKNSFEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGIEWTFI 424 (691)
T ss_pred HHHHhCcCcccCCccceEEEEec--------CcccccCCCCHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCccc
Confidence 56666655 35566777776 559998 999999999999999999999999999999999999999999
Q ss_pred ecCChHHHHHHHhcCCCcccccchhhhccCCCCCcchhhhhhhCCC
Q psy3313 77 EFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVFWMIKPT 122 (135)
Q Consensus 77 ~~~dn~~~ldLi~~~p~GllslLDee~~~pk~td~tf~~~~~~~~~ 122 (135)
+|.||++|||||++ |.|||++|||||++|++||++|++++..+-.
T Consensus 425 ~f~DN~~~ldLie~-~~Gil~lLdee~~~p~~td~~f~~kl~~~~~ 469 (691)
T cd01380 425 DFYDNQPCIDLIES-KLGILSLLDEECRLPKGSDESWAQKLYNKLP 469 (691)
T ss_pred cCCCCHHHHHHHhC-CCchHHHhHHhhcCCCCChHHHHHHHHHHhc
Confidence 99999999999996 6999999999999999999999998876554
No 13
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=99.97 E-value=2.8e-31 Score=231.81 Aligned_cols=112 Identities=42% Similarity=0.706 Sum_probs=102.8
Q ss_pred cccccccc-CCCCceEeecCCCCccccccccccc-ccchhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhcCceeeeeecC
Q psy3313 2 ITQKRCYF-GVTPAVKVLTFGHRTRNLLYGKQAW-CHSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS 79 (135)
Q Consensus 2 ~~~~~~~~-~~~~~i~i~d~pg~~~~~i~Gfe~~-~N~feqlciN~~nE~Lq~~~~~~~f~~~~~ey~~Egi~~~~i~~~ 79 (135)
||+.|+.+ ..+..|+|+|.+| ||.+ .|+|||||||||||+||++|++++|..++++|.+|||+|..++|.
T Consensus 357 iN~~l~~~~~~~~~IgiLDifG--------FE~f~~NsfEQLcINyaNEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~ 428 (677)
T smart00242 357 INKSLSFKDGSTYFIGVLDIYG--------FEIFEVNSFEQLCINYANEKLQQFFNQHVFKLEQEEYEREGIDWTFIDFF 428 (677)
T ss_pred HHHHhcCCCCCceEEEEEeccc--------ccccccCCHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence 67777766 6677788888755 9997 899999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhcCCCcccccchhhhccCCCCCcchhhhhhhCC
Q psy3313 80 DNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVFWMIKP 121 (135)
Q Consensus 80 dn~~~ldLi~~~p~GllslLDee~~~pk~td~tf~~~~~~~~ 121 (135)
||++|||||+++|.|||++|||||++|++||++|++++..+-
T Consensus 429 dN~~~l~li~~~~~Gil~lLdee~~~~~~td~~~~~kl~~~~ 470 (677)
T smart00242 429 DNQDCIDLIEKKPPGILSLLDEECRFPKATDQTFLEKLNQTH 470 (677)
T ss_pred CcHHHHHHHHcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999777643
No 14
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=99.96 E-value=1.1e-30 Score=228.16 Aligned_cols=112 Identities=43% Similarity=0.701 Sum_probs=100.7
Q ss_pred cccccccc-CCCCceEeecCCCCccccccccccc-ccchhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhcCceeeeeecC
Q psy3313 2 ITQKRCYF-GVTPAVKVLTFGHRTRNLLYGKQAW-CHSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS 79 (135)
Q Consensus 2 ~~~~~~~~-~~~~~i~i~d~pg~~~~~i~Gfe~~-~N~feqlciN~~nE~Lq~~~~~~~f~~~~~ey~~Egi~~~~i~~~ 79 (135)
||+.|+.. .....|.|+|. ||||.+ .|+|||||||||||+||++|++++|..++++|.+|||.|..++|.
T Consensus 350 iN~~l~~~~~~~~~IgiLDi--------~GFE~f~~NsfEQLcINy~NEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~ 421 (679)
T cd00124 350 INSSLKPKDGRSLFIGILDI--------FGFEIFEKNSFEQLCINYANEKLQQFFNQHVFKLEQEEYQEEGIDWESIDFT 421 (679)
T ss_pred HHHHhcCCCCCCceeeEEec--------cccccCCCCCHHHHhcccchHHHHHHHHHHHHHHHHHHHHhcCCCccCCcCC
Confidence 56666653 45666777776 559998 899999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhcCCCcccccchhhhccCCCCCcchhhhhhhCC
Q psy3313 80 DNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVFWMIKP 121 (135)
Q Consensus 80 dn~~~ldLi~~~p~GllslLDee~~~pk~td~tf~~~~~~~~ 121 (135)
||++|+|||+++|.|||++|||||++|++||++|++++....
T Consensus 422 dn~~~ldli~~~~~Gi~~lLdee~~~~~~~d~~~~~kl~~~~ 463 (679)
T cd00124 422 DNQEVIDLIEKKPGGLLSLLDEECLFPKGTDETFLEKLNNKL 463 (679)
T ss_pred CCHHHHHHHhcCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999887544
No 15
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=99.96 E-value=2.7e-30 Score=225.67 Aligned_cols=112 Identities=41% Similarity=0.695 Sum_probs=96.2
Q ss_pred ccccccccC--CCCceEeecCCCCccccccccccc-ccchhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhcCceeeeeec
Q psy3313 2 ITQKRCYFG--VTPAVKVLTFGHRTRNLLYGKQAW-CHSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF 78 (135)
Q Consensus 2 ~~~~~~~~~--~~~~i~i~d~pg~~~~~i~Gfe~~-~N~feqlciN~~nE~Lq~~~~~~~f~~~~~ey~~Egi~~~~i~~ 78 (135)
||++||... ..+.|+|||.|| ||.+ .|+|||||||||||+||++|++++|..++++|.+|||.|..++|
T Consensus 351 iN~~L~~~~~~~~~~IgILDi~G--------FE~~~~N~fEQLciNyanErLq~~f~~~~f~~e~~~y~~EgI~~~~i~~ 422 (689)
T PF00063_consen 351 INSALSPSESENSSSIGILDIFG--------FENFSVNSFEQLCINYANERLQQFFNQHIFKSEQEEYKEEGIDWPFIDF 422 (689)
T ss_dssp HHHHH--SS-S-SEEEEEEEEE---------B---SSB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCS-G
T ss_pred hhhccccccccccccCcccCccc--------cccccccccccceeeeccccccceeeeeccccccccccccccccccccc
Confidence 788888875 788899998855 9998 99999999999999999999999999999999999999999999
Q ss_pred -CChHHHHHHHhcCCCcccccchhhhccCCCCCcchhhhhhhCC
Q psy3313 79 -SDNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVFWMIKP 121 (135)
Q Consensus 79 -~dn~~~ldLi~~~p~GllslLDee~~~pk~td~tf~~~~~~~~ 121 (135)
.||.+|||||+++|.|||++|||||++|++||++|++++..+.
T Consensus 423 ~~dn~~~ldLi~~~~~Gil~lLdee~~~~~~sd~~fl~kl~~~~ 466 (689)
T PF00063_consen 423 NPDNQPCLDLIEKKPKGILSLLDEECLLPRGSDESFLEKLLKRH 466 (689)
T ss_dssp CGHHHHHHHHHHSSTTSHHHHHHHHCTSTTS-HHHHHHHHHHHH
T ss_pred ccCchhhhhhhccccCCHHHHhhhhhhcccchhhHHHHHHHhhc
Confidence 9999999999999999999999999999999999999776555
No 16
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=99.96 E-value=9e-30 Score=224.42 Aligned_cols=112 Identities=24% Similarity=0.295 Sum_probs=95.1
Q ss_pred cccccccc-CCCCceEeecCCCCccccccccccc-------ccchhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhcCcee
Q psy3313 2 ITQKRCYF-GVTPAVKVLTFGHRTRNLLYGKQAW-------CHSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRW 73 (135)
Q Consensus 2 ~~~~~~~~-~~~~~i~i~d~pg~~~~~i~Gfe~~-------~N~feqlciN~~nE~Lq~~~~~~~f~~~~~ey~~Egi~~ 73 (135)
||+.++.. .....|.|+|. ||||.+ .|+|||||||||||+||++|++++|..++++|.+|||+|
T Consensus 361 IN~~l~~~~~~~~~IgiLDI--------fGFE~f~~n~~~~~NsfEQLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~ 432 (767)
T cd01386 361 INRSISSSHHSIASIMLVDT--------PGFQNPASQGKDRAATFEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEV 432 (767)
T ss_pred HHHHhCCCCCCCcEEEEEec--------ccccccccccccCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 45555554 22355666665 568887 389999999999999999999999999999999999999
Q ss_pred eeeec-CChHHHHHHHhcCC--------------CcccccchhhhccCCCCCcchhhhhhhCC
Q psy3313 74 RHIEF-SDNTLCLQLVEGKP--------------NGLLCVLDDQANWSRGNPMVSCVFWMIKP 121 (135)
Q Consensus 74 ~~i~~-~dn~~~ldLi~~~p--------------~GllslLDee~~~pk~td~tf~~~~~~~~ 121 (135)
+.+.+ .||.+||+||+++| .|||++|||||++|++||++|++++..+-
T Consensus 433 ~~~~~~~dn~~~i~lid~~p~~~~~~~~~~~~~~~GIl~lLDEec~~p~~tD~~f~~kl~~~~ 495 (767)
T cd01386 433 EFDLAEPSPGTTVALVDQAPQQVVVPAGLRAEDARGLLWLLDEEALVPGSSDDTFLERLFAAY 495 (767)
T ss_pred cccccCCCchhhHHHhhcccccccccchhhccCCCchhhhhhHhhcCCCCcHHHHHHHHHHHh
Confidence 87655 79999999999865 59999999999999999999999887643
No 17
>KOG0164|consensus
Probab=99.95 E-value=1.7e-29 Score=216.95 Aligned_cols=117 Identities=32% Similarity=0.489 Sum_probs=104.7
Q ss_pred ccccccCCCCceEeecCCCCcc----c------cccccccc-ccchhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhcCce
Q psy3313 4 QKRCYFGVTPAVKVLTFGHRTR----N------LLYGKQAW-CHSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIR 72 (135)
Q Consensus 4 ~~~~~~~~~~~i~i~d~pg~~~----~------~i~Gfe~~-~N~feqlciN~~nE~Lq~~~~~~~f~~~~~ey~~Egi~ 72 (135)
+||+.|.|++||..+...|... + +|||||++ .|||||||||||||+|||.|++.++++||+||.+|||+
T Consensus 348 ~RlF~Wiv~rIn~~i~~~~~~~~~~~~~Vigvldiygfeif~~NSFEQfcINYCNEKLQQlFIel~LKqEQEEY~rEgI~ 427 (1001)
T KOG0164|consen 348 SRLFTWIVNRINRSIEVKGVITLRKGNTVIGVLDIYGFEIFQDNSFEQFCINYCNEKLQQLFIELVLKQEQEEYEREGIE 427 (1001)
T ss_pred HHHHHHHHHhhhhheecccccccccCceEEEEEEeeeEEeecCCcHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCC
Confidence 6788898888888877665211 1 48999998 99999999999999999999999999999999999999
Q ss_pred eeeeecCChHHHHHHHhcCCCcccccchhhhccCC-CCCcchhhhhhhC
Q psy3313 73 WRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSR-GNPMVSCVFWMIK 120 (135)
Q Consensus 73 ~~~i~~~dn~~~ldLi~~~p~GllslLDee~~~pk-~td~tf~~~~~~~ 120 (135)
|.+|+|.+|.-++||++.+..|||+||||||+.|+ .||.+|++++-++
T Consensus 428 W~~i~YFnN~iIcdLvE~~~~GIlailDe~Cl~~G~vtD~tfL~~l~~~ 476 (1001)
T KOG0164|consen 428 WTHIDYFNNKIICDLVEQPHKGILAILDEACLRPGTVTDETFLEKLNQK 476 (1001)
T ss_pred ceehhhcCCceeeehhccCccchhhhhhHHhcCCCccchHHHHHHHHHH
Confidence 99999999999999999999999999999999986 7999999865443
No 18
>KOG0161|consensus
Probab=99.95 E-value=7.6e-29 Score=231.01 Aligned_cols=113 Identities=36% Similarity=0.590 Sum_probs=98.5
Q ss_pred CCCCceEeecCCCCccccccccccc-ccchhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhcCceeeeeec-CChHHHHHH
Q psy3313 10 GVTPAVKVLTFGHRTRNLLYGKQAW-CHSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQL 87 (135)
Q Consensus 10 ~~~~~i~i~d~pg~~~~~i~Gfe~~-~N~feqlciN~~nE~Lq~~~~~~~f~~~~~ey~~Egi~~~~i~~-~dn~~~ldL 87 (135)
..-.+|.|+|.|| ||++ .||||||||||+||+||++|++++|..++++|.+|||.|.+|+| .|-++|++|
T Consensus 445 ~~~~fIgvLDiaG--------FEIfe~nSFEQLciNytnEkLQqfFnh~mFvlEqeeY~~EgIew~fidfG~Dlq~~idL 516 (1930)
T KOG0161|consen 445 QRDYFIGVLDIAG--------FEIFEFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWDFIDFGLDLQPTIDL 516 (1930)
T ss_pred ccCCcceeeeecc--------ccccCcCCHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHhCCceeeeccccchhhhHHH
Confidence 3345666666666 9998 89999999999999999999999999999999999999999999 899999999
Q ss_pred HhcCCCcccccchhhhccCCCCCcchhhhhhhCCCCCCCCCccc
Q psy3313 88 VEGKPNGLLCVLDDQANWSRGNPMVSCVFWMIKPTGRGETQWSP 131 (135)
Q Consensus 88 i~~~p~GllslLDee~~~pk~td~tf~~~~~~~~~~~~~~~~~~ 131 (135)
|+ +|+||+|+|||||++|+|||.||++++...-.+++...-.+
T Consensus 517 IE-kp~Gi~slLdEEc~~PkAtd~tf~~kL~~~~~gk~~~f~~~ 559 (1930)
T KOG0161|consen 517 IE-KPMGILSLLDEECVVPKATDKTFLEKLCDQHLGKHPKFQKP 559 (1930)
T ss_pred Hh-chhhHHHHHHHHHhcCCCccchHHHHHHHHhhccCccccCc
Confidence 99 58899999999999999999999997766655544444333
No 19
>KOG0160|consensus
Probab=99.91 E-value=3.9e-25 Score=194.99 Aligned_cols=115 Identities=41% Similarity=0.632 Sum_probs=101.4
Q ss_pred cccccCCCCceEeecCCCCccc-------cccccccc-ccchhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhcCceeeee
Q psy3313 5 KRCYFGVTPAVKVLTFGHRTRN-------LLYGKQAW-CHSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHI 76 (135)
Q Consensus 5 ~~~~~~~~~~i~i~d~pg~~~~-------~i~Gfe~~-~N~feqlciN~~nE~Lq~~~~~~~f~~~~~ey~~Egi~~~~i 76 (135)
+|..|.|+.++..+..+. ... +|||||.+ .|+||||||||+||+||+.|++|+|..++++|..|+|.|..+
T Consensus 346 ~LFdwlV~~in~sL~~~~-~~~~~~igVLDiYgFEsF~~nsfeQfcINyanEkLqq~fnqHvfk~Eqeey~~e~i~Ws~i 424 (862)
T KOG0160|consen 346 LLFDWLVAKINGSLGAND-PKAERFIGVLDIYGFESFEVNSFEQFCINYANEKLQQQFNQHVFKLEQEEYTKEEIDWSGI 424 (862)
T ss_pred HHHHHHHHHhhcccccCC-CCccceeeeehcccccccccCcHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhhccccccc
Confidence 455666666666666644 221 36999998 999999999999999999999999999999999999999999
Q ss_pred ecCChHHHHHHHhcCCCcccccchhhhccCCCCCcchhhhhhhCC
Q psy3313 77 EFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVFWMIKP 121 (135)
Q Consensus 77 ~~~dn~~~ldLi~~~p~GllslLDee~~~pk~td~tf~~~~~~~~ 121 (135)
+|.||++|+++|+. |.|++++|||||++|+++|++|..++++.-
T Consensus 425 ef~dNq~~~~lie~-~~Gi~~Llde~c~lp~~t~~~~a~KL~~~~ 468 (862)
T KOG0160|consen 425 EFRDNQECLDLIEK-PLGILALLDEECMLPKGTDETLAQKLYQTL 468 (862)
T ss_pred cCcCccchhhhhcc-ccchhhccchhccCCCCCcchHHHHHHHHh
Confidence 99999999999996 999999999999999999999998777643
No 20
>KOG0163|consensus
Probab=99.91 E-value=1.1e-24 Score=188.52 Aligned_cols=114 Identities=35% Similarity=0.545 Sum_probs=96.9
Q ss_pred ccccccCCCCceEeecCCCCcc--c--cccccccc-ccchhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhcCceeeeeec
Q psy3313 4 QKRCYFGVTPAVKVLTFGHRTR--N--LLYGKQAW-CHSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF 78 (135)
Q Consensus 4 ~~~~~~~~~~~i~i~d~pg~~~--~--~i~Gfe~~-~N~feqlciN~~nE~Lq~~~~~~~f~~~~~ey~~Egi~~~~i~~ 78 (135)
.||+-|.|.+||..+.+-.-+. . +|-|||-+ +|||||||||||||+||++|++.++..+++.|..||+.++.|.|
T Consensus 430 SkLFD~lV~~iNqsiPFe~St~fiGVLDiAGFEyf~~NSFEQFCINyCNEKLQ~FFNerILkeEQElYekEGLnv~ei~f 509 (1259)
T KOG0163|consen 430 SKLFDWLVGRINQSIPFEKSTFFIGVLDIAGFEYFAVNSFEQFCINYCNEKLQKFFNERILKEEQELYEKEGLNVPEIEF 509 (1259)
T ss_pred HHHHHHHHHHhhcccccccccceeEEEeeccceeeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEe
Confidence 4555666666666555522000 0 24579998 99999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHhcCCCcccccchhhhccCCCCCcchhhhh
Q psy3313 79 SDNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVFW 117 (135)
Q Consensus 79 ~dn~~~ldLi~~~p~GllslLDee~~~pk~td~tf~~~~ 117 (135)
.||++||+||+.|..|||.|||||.++|+++++.|-.+.
T Consensus 510 ~DNqDcIeL~E~K~~GifdlLDEEaklP~~s~qhFT~~v 548 (1259)
T KOG0163|consen 510 TDNQDCIELIEAKSNGIFDLLDEEAKLPKPSYQHFTARV 548 (1259)
T ss_pred ccchhHHHHHHHhccchhhhhhhhccCCCcchHHHHHHH
Confidence 999999999999999999999999999999999987643
No 21
>KOG0162|consensus
Probab=99.85 E-value=1.2e-22 Score=175.36 Aligned_cols=115 Identities=30% Similarity=0.495 Sum_probs=96.4
Q ss_pred ccccccCCCCceEeecCCC--Cccc----cccccccc-ccchhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhcCceeeee
Q psy3313 4 QKRCYFGVTPAVKVLTFGH--RTRN----LLYGKQAW-CHSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHI 76 (135)
Q Consensus 4 ~~~~~~~~~~~i~i~d~pg--~~~~----~i~Gfe~~-~N~feqlciN~~nE~Lq~~~~~~~f~~~~~ey~~Egi~~~~i 76 (135)
.+|+-|.|.++|..+.... ..-+ +|||||++ .|||||+||||.||+||+.|++.+++.|+++|.+|||.|.+|
T Consensus 360 ~~lFD~lV~rvNkam~~~~~~~~~sIGiLDIYGFEIFe~N~FEQ~CINfVNEKLQQIFIeLTLKaEQEeYvrE~I~WTpI 439 (1106)
T KOG0162|consen 360 ARLFDWLVERVNKAMQAFKGSEEYSIGILDIYGFEIFENNGFEQFCINFVNEKLQQIFIELTLKAEQEEYVREGIKWTPI 439 (1106)
T ss_pred HHHHHHHHHHHHHHHhcCCCccccceeeEEeeeeeecccCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccccch
Confidence 3566666777766665321 1111 37999998 899999999999999999999999999999999999999999
Q ss_pred ecCChHHHHHHHhc-CCCcccccchhhhcc----CCCCCcchhhhhh
Q psy3313 77 EFSDNTLCLQLVEG-KPNGLLCVLDDQANW----SRGNPMVSCVFWM 118 (135)
Q Consensus 77 ~~~dn~~~ldLi~~-~p~GllslLDee~~~----pk~td~tf~~~~~ 118 (135)
.|.||.-+.|||+. +|.|||++|||.|.. ..+.|++|++++-
T Consensus 440 kYFnNKvVCDLIE~K~PPGims~ldD~~At~Ha~~~~aDqa~~qrLn 486 (1106)
T KOG0162|consen 440 KYFNNKVVCDLIENKRPPGIMSALDDVCATAHADSEGADQALLQRLN 486 (1106)
T ss_pred hhcCCeeeeehhhccCCchHHHHHHHHHHHhccccchhHHHHHHHHH
Confidence 99999999999997 478999999999986 3567788888765
No 22
>KOG4229|consensus
Probab=99.84 E-value=8.9e-22 Score=177.14 Aligned_cols=113 Identities=39% Similarity=0.651 Sum_probs=101.9
Q ss_pred cccccCCCCceEeecCCCCc--cc-----cccccccc-ccchhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhcCceeeee
Q psy3313 5 KRCYFGVTPAVKVLTFGHRT--RN-----LLYGKQAW-CHSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHI 76 (135)
Q Consensus 5 ~~~~~~~~~~i~i~d~pg~~--~~-----~i~Gfe~~-~N~feqlciN~~nE~Lq~~~~~~~f~~~~~ey~~Egi~~~~i 76 (135)
+|..|+|.+||.++-.+... .. +|||||.+ .|+|||+|||+|||++|.+|.+|+|..++++|..|+|.|..+
T Consensus 404 ~lf~~iv~rIn~~~~~~~~~~~~~~IgiLdiFgfE~f~~nsfEq~~in~Ane~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i 483 (1062)
T KOG4229|consen 404 RLFDWIVLRINAALSPESDISDILSIGILDIFGFENFERNSFEQLCINLANEQLQYYFNQHIFALEQEEYDNESIDWRNI 483 (1062)
T ss_pred HHHHHHHhhHHhccCccccccccceeehhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCeeee
Confidence 34456888888888777731 11 48999998 999999999999999999999999999999999999999999
Q ss_pred ecCChHHHHHHHhcCCCcccccchhhhccCCCCCcchhhhh
Q psy3313 77 EFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVFW 117 (135)
Q Consensus 77 ~~~dn~~~ldLi~~~p~GllslLDee~~~pk~td~tf~~~~ 117 (135)
.|.||..|+++|..||+|||.+||||+.||++||+|++.++
T Consensus 484 ~~~dN~~~ldli~~kp~gil~liDees~fP~~td~tl~~k~ 524 (1062)
T KOG4229|consen 484 EFADNRRRLDLISPKPMGILSLIDEESRFPKATDQTLLLKL 524 (1062)
T ss_pred eeeeccchhhhhccCccchhheecccCcCCchHHHHHHHHh
Confidence 99999999999999999999999999999999999988744
No 23
>COG0218 Predicted GTPase [General function prediction only]
Probab=22.84 E-value=45 Score=25.63 Aligned_cols=18 Identities=17% Similarity=0.351 Sum_probs=13.1
Q ss_pred CCCceEeecCCCCccccccccccc
Q psy3313 11 VTPAVKVLTFGHRTRNLLYGKQAW 34 (135)
Q Consensus 11 ~~~~i~i~d~pg~~~~~i~Gfe~~ 34 (135)
+..-..++|+|| |||..-
T Consensus 68 ~~~~~~lVDlPG------YGyAkv 85 (200)
T COG0218 68 VDDELRLVDLPG------YGYAKV 85 (200)
T ss_pred ecCcEEEEeCCC------cccccC
Confidence 333466899999 898874
Done!