Query psy3313
Match_columns 135
No_of_seqs 108 out of 1050
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 21:49:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3313.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3313hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v26_A Myosin VI; calmodulin-b 100.0 2.4E-34 8.3E-39 252.8 7.2 112 2-121 435-547 (784)
2 1lkx_A Myosin IE heavy chain; 100.0 2.7E-34 9.2E-39 249.9 6.1 111 2-120 368-480 (697)
3 4anj_A Unconventional myosin-V 100.0 8.3E-34 2.8E-38 255.0 7.6 113 2-122 439-552 (1052)
4 1w7j_A Myosin VA; motor protei 100.0 1E-33 3.6E-38 249.0 6.0 110 2-120 419-530 (795)
5 4db1_A Myosin-7; S1DC, cardiac 100.0 1.3E-33 4.5E-38 247.9 5.6 109 2-119 443-554 (783)
6 1w9i_A Myosin II heavy chain; 100.0 1.7E-33 6E-38 246.7 6.2 110 2-119 437-549 (770)
7 1kk8_A Myosin heavy chain, str 100.0 2.5E-33 8.5E-38 247.7 5.1 108 2-118 442-552 (837)
8 2ycu_A Non muscle myosin 2C, a 100.0 1.2E-32 4E-37 247.1 6.1 110 2-119 414-529 (995)
9 2dfs_A Myosin-5A; myosin-V, in 100.0 1.1E-32 3.6E-37 248.9 5.5 110 2-120 419-530 (1080)
10 1g8x_A Myosin II heavy chain f 100.0 3.3E-32 1.1E-36 244.4 6.4 111 2-120 437-550 (1010)
11 1i84_S Smooth muscle myosin he 100.0 1.5E-31 5.1E-36 243.1 6.1 111 2-121 445-562 (1184)
12 1y4m_A HERV-FRD_6P24.1 proviru 29.6 17 0.00059 21.2 0.8 27 79-105 24-50 (53)
13 1mof_A Moloney murine leukemia 25.4 21 0.00072 21.0 0.7 27 79-105 26-52 (55)
No 1
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=100.00 E-value=2.4e-34 Score=252.81 Aligned_cols=112 Identities=31% Similarity=0.502 Sum_probs=102.7
Q ss_pred ccccccccCCCCceEeecCCCCccccccccccc-ccchhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhcCceeeeeecCC
Q psy3313 2 ITQKRCYFGVTPAVKVLTFGHRTRNLLYGKQAW-CHSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSD 80 (135)
Q Consensus 2 ~~~~~~~~~~~~~i~i~d~pg~~~~~i~Gfe~~-~N~feqlciN~~nE~Lq~~~~~~~f~~~~~ey~~Egi~~~~i~~~d 80 (135)
||+.|+......+|.|||.+ |||.+ .|+|||||||||||+||++|++++|..|+++|.+|||+|..|+|.|
T Consensus 435 IN~~l~~~~~~~~IGvLDI~--------GFE~f~~NsFEQlcINyaNEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~D 506 (784)
T 2v26_A 435 VNQCFPFETSSYFIGVLDIA--------GFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVD 506 (784)
T ss_dssp HHTTSCCSCCSEEEEEEECC--------CCCCCSSCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCCCCCCCC
T ss_pred HHHhcCcccccceeeecccC--------CcccCCcCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCcccccccC
Confidence 67777766566777888774 59998 9999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcCCCcccccchhhhccCCCCCcchhhhhhhCC
Q psy3313 81 NTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVFWMIKP 121 (135)
Q Consensus 81 n~~~ldLi~~~p~GllslLDee~~~pk~td~tf~~~~~~~~ 121 (135)
|++|+|||+++|+|||+||||||++|++||++|++++...-
T Consensus 507 N~~~idLie~kp~GIlslLDEe~~~p~~tD~~f~~kl~~~~ 547 (784)
T 2v26_A 507 NQDCIDLIEARLVGILDILDEENRLPQPSDQHFTSAVHQKH 547 (784)
T ss_dssp CHHHHHHHHCTTTSHHHHHHHHHHSSSCCHHHHHHHHHHHT
T ss_pred hHHHHHHHhhccccHHHHHHHHhcCCCCChHHHHHHHHHHh
Confidence 99999999999999999999999999999999999876644
No 2
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=100.00 E-value=2.7e-34 Score=249.91 Aligned_cols=111 Identities=33% Similarity=0.518 Sum_probs=100.1
Q ss_pred cccccccc-CCCCceEeecCCCCccccccccccc-ccchhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhcCceeeeeecC
Q psy3313 2 ITQKRCYF-GVTPAVKVLTFGHRTRNLLYGKQAW-CHSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS 79 (135)
Q Consensus 2 ~~~~~~~~-~~~~~i~i~d~pg~~~~~i~Gfe~~-~N~feqlciN~~nE~Lq~~~~~~~f~~~~~ey~~Egi~~~~i~~~ 79 (135)
||+.|+.. .-..+|.|||. ||||.+ .|+|||||||||||+||++|++++|..|+++|.+|||+|..|+|.
T Consensus 368 IN~~l~~~~~~~~~IGvLDI--------~GFE~f~~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~ 439 (697)
T 1lkx_A 368 INTIINCTTEKGPVIGILDI--------YGFEVFQNNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYF 439 (697)
T ss_dssp HHHHHCCCSCCCCEEEEEEC--------CCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCS
T ss_pred HHhhcCCCCCCceeEEeecc--------ccccccCcCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Confidence 56666644 34566777776 559998 999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhcCCCcccccchhhhccCCCCCcchhhhhhhC
Q psy3313 80 DNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVFWMIK 120 (135)
Q Consensus 80 dn~~~ldLi~~~p~GllslLDee~~~pk~td~tf~~~~~~~ 120 (135)
||++|+|||+++|+|||+||||||++|++||++|++++...
T Consensus 440 dN~~~idLie~kp~GilslLDEec~~p~~tD~~f~~kl~~~ 480 (697)
T 1lkx_A 440 NNKPICELIEKKPIGLISLLDEACLIAKSTDQTFLDSICKQ 480 (697)
T ss_dssp CCCHHHHHTTSSSSSHHHHHHHHHHSTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHhcccCChhhhhHHhhCCCCCChHHHHHHHHHH
Confidence 99999999999999999999999999999999999987764
No 3
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=100.00 E-value=8.3e-34 Score=255.04 Aligned_cols=113 Identities=30% Similarity=0.474 Sum_probs=106.1
Q ss_pred ccccccccCCCCceEeecCCCCccccccccccc-ccchhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhcCceeeeeecCC
Q psy3313 2 ITQKRCYFGVTPAVKVLTFGHRTRNLLYGKQAW-CHSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSD 80 (135)
Q Consensus 2 ~~~~~~~~~~~~~i~i~d~pg~~~~~i~Gfe~~-~N~feqlciN~~nE~Lq~~~~~~~f~~~~~ey~~Egi~~~~i~~~d 80 (135)
||+.|+.+....+|.|||.+| ||.+ .|||||||||||||+||++|++++|..++++|.+|||+|..|+|.|
T Consensus 439 IN~~l~~~~~~~~IGILDI~G--------FE~f~~NsFEQLCINyaNEkLQq~Fn~~vF~~EqeeY~~EgI~w~~I~f~D 510 (1052)
T 4anj_A 439 VNQCFPFETSSYFIGVLDIAG--------FEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVD 510 (1052)
T ss_dssp HHTTSCCSCCSEEEEEEECCC--------CCCCSSCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCCCCCCCC
T ss_pred hhcccccccccceEEEEecCC--------CcccccCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCcccCCcCC
Confidence 788888887788899999855 9998 9999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcCCCcccccchhhhccCCCCCcchhhhhhhCCC
Q psy3313 81 NTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVFWMIKPT 122 (135)
Q Consensus 81 n~~~ldLi~~~p~GllslLDee~~~pk~td~tf~~~~~~~~~ 122 (135)
|++|||||+++|+|||+||||||++|++||++|++++..+-.
T Consensus 511 N~~~idLie~kp~GIl~lLDEe~~~p~~tD~~f~~kl~~~~~ 552 (1052)
T 4anj_A 511 NQDCIDLIEARLVGILDILDEENRLPQPSDQHFTSAVHQKHK 552 (1052)
T ss_dssp CHHHHHHHHCTTTSHHHHHHHHHHSSSCCHHHHHHHHHHTTT
T ss_pred cHHHHHHHHcCcccHHHHHHHHhcCCCCcHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999998876543
No 4
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=99.98 E-value=1e-33 Score=249.01 Aligned_cols=110 Identities=40% Similarity=0.640 Sum_probs=99.5
Q ss_pred cccccccc-CCCCceEeecCCCCccccccccccc-ccchhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhcCceeeeeecC
Q psy3313 2 ITQKRCYF-GVTPAVKVLTFGHRTRNLLYGKQAW-CHSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS 79 (135)
Q Consensus 2 ~~~~~~~~-~~~~~i~i~d~pg~~~~~i~Gfe~~-~N~feqlciN~~nE~Lq~~~~~~~f~~~~~ey~~Egi~~~~i~~~ 79 (135)
||+.|+.. .-..+|.|||. ||||.+ .|+|||||||||||+||++|++++|..|++||.+|||+|..++|.
T Consensus 419 IN~~l~~~~~~~~~IGvLDI--------~GFE~f~~NsFEQlcINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~ 490 (795)
T 1w7j_A 419 VNKALHSTVKQHSFIGVLDI--------YGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFY 490 (795)
T ss_dssp HHHHHCCSSCCSEEEEEEEC--------CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCCC
T ss_pred HHHhhcCCccccceEEeecc--------CcccccCcCCHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCcccccCcc
Confidence 56667665 34667777776 559998 999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhcCCCcccccchhhhccCCCCCcchhhhhhhC
Q psy3313 80 DNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVFWMIK 120 (135)
Q Consensus 80 dn~~~ldLi~~~p~GllslLDee~~~pk~td~tf~~~~~~~ 120 (135)
||++|||||+++ +|||+||||||++|++||++|+++++..
T Consensus 491 DN~~~idLie~~-~GIlslLDEec~~p~~tD~~f~~kl~~~ 530 (795)
T 1w7j_A 491 DNQPCINLIEAK-MGVLDLLDEECKMPKGSDDTWAQKLYNT 530 (795)
T ss_dssp CCHHHHHHHHST-TSHHHHHHHHHTSTTCCHHHHHHHHHHH
T ss_pred ccHHHHHHHHhc-CCHHHhhhhhccCCCCChHHHHHHHHHH
Confidence 999999999986 9999999999999999999999987755
No 5
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=99.98 E-value=1.3e-33 Score=247.91 Aligned_cols=109 Identities=37% Similarity=0.643 Sum_probs=96.2
Q ss_pred cccccccc-CCCCceEeecCCCCccccccccccc-ccchhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhcCceeeeeec-
Q psy3313 2 ITQKRCYF-GVTPAVKVLTFGHRTRNLLYGKQAW-CHSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF- 78 (135)
Q Consensus 2 ~~~~~~~~-~~~~~i~i~d~pg~~~~~i~Gfe~~-~N~feqlciN~~nE~Lq~~~~~~~f~~~~~ey~~Egi~~~~i~~- 78 (135)
||+.|+.. ....+|.|||. ||||++ .|+|||||||||||+||++|++++|..++++|.+|||+|..++|
T Consensus 443 IN~~l~~~~~~~~~IGvLDI--------~GFE~f~~NsFEQlCINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~ 514 (783)
T 4db1_A 443 INATLETKQPRQYFIGVLDI--------AGFEIFDFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFG 514 (783)
T ss_dssp HHHHHCCSCCCSEEEEEEEC--------CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCGG
T ss_pred HHHhcCCCCCCCceEEEecc--------ccccccccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCccccccc
Confidence 56666654 34456666666 559998 99999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHhcCCCcccccchhhhccCCCCCcchhhhhhh
Q psy3313 79 SDNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVFWMI 119 (135)
Q Consensus 79 ~dn~~~ldLi~~~p~GllslLDee~~~pk~td~tf~~~~~~ 119 (135)
.||++|||||++ |+|||+||||||++|++||++|+++++.
T Consensus 515 ~Dn~~~idLiek-p~Gil~lLDEec~~p~~tD~tf~~kl~~ 554 (783)
T 4db1_A 515 MDLQACIDLIEK-PMGIMSILEEECMFPKATDMTFKAKLFD 554 (783)
T ss_dssp GGGHHHHHHHHS-TTSHHHHHCC-TTCTTCCHHHHHHHHHH
T ss_pred CChHHHHHHHhC-CCchHhhhhHHhcCCCCCHHHHHHHHHH
Confidence 599999999995 8999999999999999999999998864
No 6
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=99.98 E-value=1.7e-33 Score=246.69 Aligned_cols=110 Identities=39% Similarity=0.692 Sum_probs=98.5
Q ss_pred ccccccccCCCCceEeecCCCCccccccccccc-ccchhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhcCceeeeeec-C
Q psy3313 2 ITQKRCYFGVTPAVKVLTFGHRTRNLLYGKQAW-CHSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-S 79 (135)
Q Consensus 2 ~~~~~~~~~~~~~i~i~d~pg~~~~~i~Gfe~~-~N~feqlciN~~nE~Lq~~~~~~~f~~~~~ey~~Egi~~~~i~~-~ 79 (135)
||+.|+...-..+|.|||. ||||++ .|||||||||||||+||++|++++|..|+++|.+|||+|..++| .
T Consensus 437 IN~~l~~~~~~~~IGvLDI--------~GFE~F~~NsFEQlCINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~ 508 (770)
T 1w9i_A 437 INNVLCQERKAYFIGVLDI--------YGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGL 508 (770)
T ss_dssp HHHHHCCSCCSEEEEEEEC--------CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCGGG
T ss_pred HHHHhcCCCCCCeeeeccC--------ccccccccCCHHHHHHHhhHHHHHHHHHhhhhHHHHHHhhccCCCceeecccc
Confidence 5666665532667777776 559998 99999999999999999999999999999999999999999999 5
Q ss_pred ChHHHHHHHhcC-CCcccccchhhhccCCCCCcchhhhhhh
Q psy3313 80 DNTLCLQLVEGK-PNGLLCVLDDQANWSRGNPMVSCVFWMI 119 (135)
Q Consensus 80 dn~~~ldLi~~~-p~GllslLDee~~~pk~td~tf~~~~~~ 119 (135)
||++|||||+++ |+|||+||||||++|++||++|+++++.
T Consensus 509 dn~~~idLiek~~p~GilslLDEec~~p~~tD~~f~~kL~~ 549 (770)
T 1w9i_A 509 DSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHS 549 (770)
T ss_dssp GGHHHHHHHHCTTTTCHHHHHHHHHSSSSCCHHHHHHHHHH
T ss_pred CcHHHHHHHhCCCCCchhhhhhhhhCCCCCChHHHHHHHHH
Confidence 999999999974 9999999999999999999999998654
No 7
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=99.97 E-value=2.5e-33 Score=247.68 Aligned_cols=108 Identities=37% Similarity=0.659 Sum_probs=97.2
Q ss_pred cccccccc-CCCCceEeecCCCCccccccccccc-ccchhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhcCceeeeeec-
Q psy3313 2 ITQKRCYF-GVTPAVKVLTFGHRTRNLLYGKQAW-CHSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF- 78 (135)
Q Consensus 2 ~~~~~~~~-~~~~~i~i~d~pg~~~~~i~Gfe~~-~N~feqlciN~~nE~Lq~~~~~~~f~~~~~ey~~Egi~~~~i~~- 78 (135)
||+.|+.. ....+|.|||. ||||.+ .|||||||||||||+||++|++++|..|++||.+|||+|..++|
T Consensus 442 IN~~l~~~~~~~~~IGvLDI--------~GFE~f~~NsFEQlcINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~ 513 (837)
T 1kk8_A 442 VNKTLDTKAKRNYYIGVLDI--------AGFEIFDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFG 513 (837)
T ss_dssp HHHHHCCCCCCCEEEEEEEC--------CCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCCCC
T ss_pred HHHhccCCCCCcceEEEEec--------CCccccccccHHHHHHHHhhHHHHHHHHHhhhHHHHHHhhhcCCceeecccc
Confidence 56666644 44567777776 559998 99999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHhcCCCcccccchhhhccCCCCCcchhhhhh
Q psy3313 79 SDNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVFWM 118 (135)
Q Consensus 79 ~dn~~~ldLi~~~p~GllslLDee~~~pk~td~tf~~~~~ 118 (135)
.||++|||||++ |+|||+||||||++|++||++|+++++
T Consensus 514 ~dn~~~idLiek-p~GIlslLDEec~~p~~tD~tf~~kl~ 552 (837)
T 1kk8_A 514 MDLQMCIDLIEK-PMGILSILEEECMFPKADDKSFQDKLY 552 (837)
T ss_dssp HHHHHHHHHHHS-TTSHHHHHHHHTTCTTCCHHHHHHHHH
T ss_pred cCHHHHHHHHhc-CCcHHHHHHHHhcCCCCChHHHHHHHH
Confidence 699999999996 899999999999999999999999864
No 8
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=99.97 E-value=1.2e-32 Score=247.10 Aligned_cols=110 Identities=35% Similarity=0.587 Sum_probs=99.0
Q ss_pred ccccccccC--CCCceEeecCCCCccccccccccc-ccchhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhcCceeeeeec
Q psy3313 2 ITQKRCYFG--VTPAVKVLTFGHRTRNLLYGKQAW-CHSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF 78 (135)
Q Consensus 2 ~~~~~~~~~--~~~~i~i~d~pg~~~~~i~Gfe~~-~N~feqlciN~~nE~Lq~~~~~~~f~~~~~ey~~Egi~~~~i~~ 78 (135)
||+.|+... ...+|.|||. ||||.+ .|||||||||||||+||++|++++|..++++|.+|||+|..|+|
T Consensus 414 iN~~l~~~~~~~~~~IgvLDI--------~GFE~f~~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f 485 (995)
T 2ycu_A 414 LNRALDRSPRQGASFLGILDI--------AGFEIFQLNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDF 485 (995)
T ss_dssp HHHHHCCCSCCCSEEEEEEEC--------CCBCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCC
T ss_pred HHHHhcCCCCCccceEEEecc--------ccccccccchHHHHHHHhhHHHHHHHHHHhhhHHHHHHHhccCCCcccccc
Confidence 577777552 5667777777 459998 99999999999999999999999999999999999999999999
Q ss_pred -CChHHHHHHHhc--CCCcccccchhhhccCCCCCcchhhhhhh
Q psy3313 79 -SDNTLCLQLVEG--KPNGLLCVLDDQANWSRGNPMVSCVFWMI 119 (135)
Q Consensus 79 -~dn~~~ldLi~~--~p~GllslLDee~~~pk~td~tf~~~~~~ 119 (135)
.||++|||||++ +|+|||+||||||++|++||++|+++++.
T Consensus 486 ~~dn~~~idlie~~~~p~Gil~lLdee~~~p~~tD~~f~~kl~~ 529 (995)
T 2ycu_A 486 GLDLQPCIDLIERPANPPGLLALLDEECWFPKATDKSFVEKVAQ 529 (995)
T ss_dssp SCCCHHHHHHHHCCSSSCCHHHHHHHSSSSTTCCHHHHHHHHHH
T ss_pred ccChHHHHHHHhccCCCCchhhhhHHHhcCCCCchHHHHHHHHH
Confidence 699999999997 48999999999999999999999998654
No 9
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=99.97 E-value=1.1e-32 Score=248.94 Aligned_cols=110 Identities=40% Similarity=0.640 Sum_probs=99.1
Q ss_pred cccccccc-CCCCceEeecCCCCccccccccccc-ccchhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhcCceeeeeecC
Q psy3313 2 ITQKRCYF-GVTPAVKVLTFGHRTRNLLYGKQAW-CHSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS 79 (135)
Q Consensus 2 ~~~~~~~~-~~~~~i~i~d~pg~~~~~i~Gfe~~-~N~feqlciN~~nE~Lq~~~~~~~f~~~~~ey~~Egi~~~~i~~~ 79 (135)
||+.|+.. ....+|.|||. ||||++ .|||||||||||||+||++|++++|..++++|.+|||+|.+|+|.
T Consensus 419 iN~~l~~~~~~~~~IgvLDI--------~GFE~f~~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~ 490 (1080)
T 2dfs_A 419 VNKALHSTVKQHSFIGVLDI--------YGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFY 490 (1080)
T ss_dssp HHHHHCCSSCCCEEEEEEEE--------CCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCCCCC
T ss_pred HHHhhccccccCceEEeecc--------CCccccCcCCHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccc
Confidence 56666665 34667777776 559998 999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhcCCCcccccchhhhccCCCCCcchhhhhhhC
Q psy3313 80 DNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVFWMIK 120 (135)
Q Consensus 80 dn~~~ldLi~~~p~GllslLDee~~~pk~td~tf~~~~~~~ 120 (135)
||++|||||+++ +|||+||||||++|++||++|+++++..
T Consensus 491 dn~~~idlie~~-~Gil~lLdee~~~p~~tD~~f~~kl~~~ 530 (1080)
T 2dfs_A 491 DNQPCINLIEAK-MGVLDLLDEECKMPKGSDDTWAQKLYNT 530 (1080)
T ss_dssp CCHHHHHHHHST-TSHHHHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred ccHHHHHHHhcC-CceeeeccccccCCCCChHHHHHHHHHH
Confidence 999999999976 9999999999999999999999987654
No 10
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=99.97 E-value=3.3e-32 Score=244.40 Aligned_cols=111 Identities=38% Similarity=0.658 Sum_probs=100.0
Q ss_pred ccccccccCCCCceEeecCCCCccccccccccc-ccchhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhcCceeeeeec-C
Q psy3313 2 ITQKRCYFGVTPAVKVLTFGHRTRNLLYGKQAW-CHSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-S 79 (135)
Q Consensus 2 ~~~~~~~~~~~~~i~i~d~pg~~~~~i~Gfe~~-~N~feqlciN~~nE~Lq~~~~~~~f~~~~~ey~~Egi~~~~i~~-~ 79 (135)
||+.|+......+|.|||.+ |||.+ .|||||||||||||+||++|++++|..++++|.+|||+|..++| .
T Consensus 437 IN~~l~~~~~~~~IgvLDI~--------GFE~f~~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~ 508 (1010)
T 1g8x_A 437 INNVLCSERKAYFIGVLDIS--------GFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGL 508 (1010)
T ss_dssp HHHHHCCSSCSEEEEEEECC--------CCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCC
T ss_pred HHHHhcCCCcCceeeeccCc--------ccccCCcCcHHHHHHHhhhHHHHHHHHHHhhHHHHHHhhccCCCcccccccc
Confidence 57777766556677777774 59998 99999999999999999999999999999999999999999999 5
Q ss_pred ChHHHHHHHhc-CCCcccccchhhhccCCCCCcchhhhhhhC
Q psy3313 80 DNTLCLQLVEG-KPNGLLCVLDDQANWSRGNPMVSCVFWMIK 120 (135)
Q Consensus 80 dn~~~ldLi~~-~p~GllslLDee~~~pk~td~tf~~~~~~~ 120 (135)
||++|||||++ +|+|||+||||||++|++||++|++++...
T Consensus 509 dn~~~idlie~~~~~Gil~lLdee~~~p~~td~~f~~kl~~~ 550 (1010)
T 1g8x_A 509 DSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSH 550 (1010)
T ss_dssp CSHHHHHHHHCTTTTCHHHHHHHHTTSSSCCHHHHHHHHHHH
T ss_pred ChHHHHHHHhcCCCCeeehhhhHHhCCCCCChHHHHHHHHHH
Confidence 99999999997 499999999999999999999999986643
No 11
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=99.97 E-value=1.5e-31 Score=243.08 Aligned_cols=111 Identities=34% Similarity=0.613 Sum_probs=97.5
Q ss_pred cccccccc--CCCCceEeecCCCCccccccccccc-ccchhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhcCceeeeeec
Q psy3313 2 ITQKRCYF--GVTPAVKVLTFGHRTRNLLYGKQAW-CHSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF 78 (135)
Q Consensus 2 ~~~~~~~~--~~~~~i~i~d~pg~~~~~i~Gfe~~-~N~feqlciN~~nE~Lq~~~~~~~f~~~~~ey~~Egi~~~~i~~ 78 (135)
||+.|+.. ....+|.|||. ||||.+ .|||||||||||||+||++|++++|..++++|..|||+|.+|+|
T Consensus 445 iN~~l~~~~~~~~~~IgvLDi--------~GFE~f~~NsfeQlciNy~nEkLq~~f~~~~f~~eq~ey~~Egi~~~~i~~ 516 (1184)
T 1i84_S 445 VNKALDKTKRQGASFLGILDI--------AGFEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDF 516 (1184)
T ss_dssp HTTTCC------CEEEEEEEC--------CCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCSCCCCCC
T ss_pred HHHhhCCCccCCcceEEEeec--------CCcCCCCcchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCcccccc
Confidence 67777764 45677888877 459998 99999999999999999999999999999999999999999999
Q ss_pred -CChHHHHHHHhcCCC---cccccchhhhccCCCCCcchhhhhhhCC
Q psy3313 79 -SDNTLCLQLVEGKPN---GLLCVLDDQANWSRGNPMVSCVFWMIKP 121 (135)
Q Consensus 79 -~dn~~~ldLi~~~p~---GllslLDee~~~pk~td~tf~~~~~~~~ 121 (135)
.||++|||||++ |+ |||+||||||++|++||.+|+++++..-
T Consensus 517 ~~dn~~~~~lie~-~~~~~Gil~lLdee~~~p~~td~~~~~kl~~~~ 562 (1184)
T 1i84_S 517 GLDLQPCIELIER-PTNPPGVLALLDEECWFPKATDTSFVEKLIQEQ 562 (1184)
T ss_dssp CCCCHHHHHTTSC-CSSSCCHHHHHHHTTSCTTCCHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHhC-CCCCCCchhhhhhhhCCCCCChHHHHHHHHHHh
Confidence 699999999996 55 9999999999999999999999877543
No 12
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=29.61 E-value=17 Score=21.16 Aligned_cols=27 Identities=19% Similarity=0.367 Sum_probs=23.0
Q ss_pred CChHHHHHHHhcCCCcccccchhhhcc
Q psy3313 79 SDNTLCLQLVEGKPNGLLCVLDDQANW 105 (135)
Q Consensus 79 ~dn~~~ldLi~~~p~GllslLDee~~~ 105 (135)
..|...+|++.-+..|+=..|.|+|.|
T Consensus 24 lQNRraLDlL~a~~GG~C~~l~e~CC~ 50 (53)
T 1y4m_A 24 LQNRRGLDMLTAAQGGICLALDEKCCF 50 (53)
T ss_dssp HHHHHHHHHHTGGGTSHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHhCCccHHhcCchhc
Confidence 357888999888888999999999976
No 13
>1mof_A Moloney murine leukemia virus P15; glycoprotein, coat protein, polyprotein, transmembrane, SIGN protein; 1.70A {Moloney murine leukemia virus} SCOP: h.3.2.1
Probab=25.44 E-value=21 Score=20.96 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=22.9
Q ss_pred CChHHHHHHHhcCCCcccccchhhhcc
Q psy3313 79 SDNTLCLQLVEGKPNGLLCVLDDQANW 105 (135)
Q Consensus 79 ~dn~~~ldLi~~~p~GllslLDee~~~ 105 (135)
..|...+|++.-+..|+=..|.|+|.|
T Consensus 26 lQNRraLD~L~a~~GG~C~~l~e~CCf 52 (55)
T 1mof_A 26 LQNRRGLDLLFLKEGGLCAALKEECAF 52 (55)
T ss_dssp HHHHHHHHHHTGGGTCHHHHHTSCCCC
T ss_pred HHHHHHHHHHHHHhCCccHHHcCchhc
Confidence 357888999888888999999999976
Done!