RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3313
         (135 letters)



>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
           discoideum, class-I myosin MyoE [TaxId: 44689]}
          Length = 684

 Score = 78.6 bits (193), Expect = 1e-18
 Identities = 32/74 (43%), Positives = 48/74 (64%)

Query: 36  HSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGL 95
           +SFEQL IN+ NE LQ  F +   + EQEEY +EGI W++IE+ +N    +L+E KP GL
Sbjct: 388 NSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGL 447

Query: 96  LCVLDDQANWSRGN 109
           + +LD+    ++  
Sbjct: 448 ISLLDEACLIAKST 461


>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
           (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 710

 Score = 72.8 bits (178), Expect = 1e-16
 Identities = 36/78 (46%), Positives = 49/78 (62%), Gaps = 3/78 (3%)

Query: 35  CHSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEG--K 91
            +SFEQLCINY NE LQ  FN  +F  EQEEY +EGI W  I+F  D   C++L+E    
Sbjct: 395 INSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTN 454

Query: 92  PNGLLCVLDDQANWSRGN 109
           P G+L +LD++  + +  
Sbjct: 455 PPGVLALLDEECWFPKAT 472


>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
           (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 794

 Score = 72.4 bits (177), Expect = 1e-16
 Identities = 32/67 (47%), Positives = 44/67 (65%)

Query: 36  HSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGL 95
           +SFEQLCIN+ NE LQ +FN H+F  EQEEY KEGI W  I+F  +      +  KP G+
Sbjct: 424 NSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIEKPMGI 483

Query: 96  LCVLDDQ 102
             +L+++
Sbjct: 484 FSILEEE 490


>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
           scallop (Aequipecten irradians) [TaxId: 31199]}
          Length = 789

 Score = 72.1 bits (176), Expect = 2e-16
 Identities = 34/76 (44%), Positives = 48/76 (63%)

Query: 34  WCHSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPN 93
             +SFEQLCINY NE LQ +FN H+F  EQEEY KEGI W  I+F  +      +  KP 
Sbjct: 420 DFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEKPM 479

Query: 94  GLLCVLDDQANWSRGN 109
           G+L +L+++  + + +
Sbjct: 480 GILSILEEECMFPKAD 495


>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
           (Gallus gallus), Va isoform [TaxId: 9031]}
          Length = 730

 Score = 68.6 bits (167), Expect = 3e-15
 Identities = 39/67 (58%), Positives = 48/67 (71%), Gaps = 1/67 (1%)

Query: 36  HSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGL 95
           +SFEQ CINYANE LQ  FN HVF+ EQEEY KE I W  I+F DN  C+ L+E K  G+
Sbjct: 385 NSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGV 443

Query: 96  LCVLDDQ 102
           L +LD++
Sbjct: 444 LDLLDEE 450


>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
           {Dictyostelium discoideum [TaxId: 44689]}
          Length = 712

 Score = 67.8 bits (165), Expect = 6e-15
 Identities = 37/78 (47%), Positives = 52/78 (66%), Gaps = 2/78 (2%)

Query: 34  WCHSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG-K 91
             +SFEQLCINY NE LQ +FN H+F+ EQEEY KE I W  I+F  D+   + L++G +
Sbjct: 415 KVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQ 474

Query: 92  PNGLLCVLDDQANWSRGN 109
           P G+L +LD+Q+ +    
Sbjct: 475 PPGILALLDEQSVFPNAT 492


>d1e93a_ e.5.1.1 (A:) Catalase I {Proteus mirabilis [TaxId: 584]}
          Length = 476

 Score = 25.2 bits (55), Expect = 3.2
 Identities = 8/39 (20%), Positives = 10/39 (25%)

Query: 43  INYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDN 81
           I Y       +  Q  F+            W H E  D 
Sbjct: 377 ITYEPNSGGVFQEQPDFKEPPLSIEGAADHWNHREDEDY 415


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.138    0.475 

Gapped
Lambda     K      H
   0.267   0.0695    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 551,769
Number of extensions: 23908
Number of successful extensions: 88
Number of sequences better than 10.0: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 13
Length of query: 135
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 59
Effective length of database: 1,364,116
Effective search space: 80482844
Effective search space used: 80482844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 48 (22.3 bits)