BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3317
(173 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9NQT8|KI13B_HUMAN Kinesin-like protein KIF13B OS=Homo sapiens GN=KIF13B PE=1 SV=1
Length = 1826
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 70/124 (56%), Gaps = 15/124 (12%)
Query: 60 SQSRASYPMSGDQSF-------DDVTLPEWVCIGESVLIRPYNSSGVIAYIGPTEFAAGT 112
++ A P +G Q+ D+V PEW+ GE V + + +GV+ Y+GP +F GT
Sbjct: 1673 AEGNAPAPGAGGQALASDSEEADEV--PEWLREGEFVTVGAH-KTGVVRYVGPADFQEGT 1729
Query: 113 WVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQD-----RRGRAMRSGGTGAM 167
WVGVELD P+GKNDG++ G +YF P +G+ VR ++ + RR +R G A
Sbjct: 1730 WVGVELDLPSGKNDGSIGGKQYFRCNPGYGLLVRPSRVRRATGPVRRRSTGLRLGAPEAR 1789
Query: 168 RRST 171
R +T
Sbjct: 1790 RSAT 1793
>sp|Q5VT06|CE350_HUMAN Centrosome-associated protein 350 OS=Homo sapiens GN=CEP350 PE=1 SV=1
Length = 3117
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 78/151 (51%), Gaps = 17/151 (11%)
Query: 3 SSMSSSLTISSDMASSSLTVSSEMDSCSDLDKRSSSSSLSSHDENKVVRRKSSTRRSSQS 62
+S S+ IS ++ SL++ S + S L+ +S + + S + + V + T S S
Sbjct: 2427 TSFGSNEEISECLSEKSLSIHSNVHSDRLLELKSPTELMKSKERSDVEHEQQVTE--SPS 2484
Query: 63 RASYPMSGDQSFDDVTLPEWVCIGESVLI---RPYNSSGVIAYIGPTEFAAGTWVGVELD 119
AS P + D+ FD IG+ VLI +P G++ + G T FA G W GVELD
Sbjct: 2485 LASVP-TADELFD-------FHIGDRVLIGNVQP----GILRFKGETSFAKGFWAGVELD 2532
Query: 120 APTGKNDGTVQGTRYFESRPKHGIFVRADKL 150
P G N+GT G YFE + KHGIF K+
Sbjct: 2533 KPEGNNNGTYDGIAYFECKEKHGIFAPPQKI 2563
>sp|Q8N3C7|CLIP4_HUMAN CAP-Gly domain-containing linker protein 4 OS=Homo sapiens GN=CLIP4
PE=1 SV=1
Length = 705
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 67/119 (56%), Gaps = 8/119 (6%)
Query: 35 RSSSSSLSSHDENKVVRRKSSTRRSSQSRASY---PMSGDQSFDDVTLPEWVCIGESVLI 91
R S S+ S+ + ++ RR + ++ + R S+ P +G V L E G VL+
Sbjct: 577 RRSFSTTSASSQKEINRRNAFSKSKAALRRSWSSTPTAGGIE-GSVKLHE----GSQVLL 631
Query: 92 RPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKL 150
N G + Y+GPT+FA+G W+G+EL + GKNDG+V RYF +P HG+ VR ++
Sbjct: 632 TSSNEMGTVRYVGPTDFASGIWLGLELRSAKGKNDGSVGDKRYFTCKPNHGVLVRPSRV 690
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 98 GVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDRRGR 157
G + + G TEFA+G W G+ELD P GKN+G+V +YF+ PK+GIF K I +GR
Sbjct: 297 GTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGKVQYFKCAPKYGIFAPLSK-ISKAKGR 355
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 85 IGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 144
+GE VL+ G I + G T FA G W G+EL+ P GKNDG+V G +YF P++GIF
Sbjct: 487 LGERVLVVG-QRLGTIRFFGTTNFAPGYWYGIELEKPHGKNDGSVGGVQYFSCSPRYGIF 545
>sp|Q01397|DYNA_NEUCR Dynactin, 150 kDa isoform OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ro-3
PE=3 SV=3
Length = 1367
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 83 VCIGESV-LIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKH 141
V +G+ + L + + Y+G T FA GTWVG+ELD P+GKNDG+VQG RYF +
Sbjct: 6 VAVGQKIELADGSGRTAFVRYVGETAFAPGTWVGIELDEPSGKNDGSVQGERYFNCEMGY 65
Query: 142 GIFVR 146
G+FVR
Sbjct: 66 GMFVR 70
>sp|Q5R686|CLIP3_PONAB CAP-Gly domain-containing linker protein 3 OS=Pongo abelii GN=CLIP3
PE=2 SV=1
Length = 547
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 85 IGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 144
+G+ VL+ G++ + G T+FA G W G+ELD PTGK+DG+V G RYF P+HG+F
Sbjct: 418 VGDQVLVA-GQKQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGSVFGVRYFTCPPRHGVF 476
Query: 145 VRADKL 150
A ++
Sbjct: 477 APASRI 482
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 85 IGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 144
+G+ VL+ +G + + G TEFA+G WVGVELD P GKNDG+V G RYF PK G+F
Sbjct: 296 LGDRVLLD-GQKTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYFICPPKQGLF 354
Query: 145 VRADKL 150
K+
Sbjct: 355 ASVSKI 360
>sp|Q96DZ5|CLIP3_HUMAN CAP-Gly domain-containing linker protein 3 OS=Homo sapiens GN=CLIP3
PE=1 SV=3
Length = 547
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 85 IGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 144
+G+ VL+ G++ + G T+FA G W G+ELD PTGK+DG+V G RYF P+HG+F
Sbjct: 418 VGDQVLVA-GQKQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGSVFGVRYFTCPPRHGVF 476
Query: 145 VRADKL 150
A ++
Sbjct: 477 APASRI 482
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 85 IGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 144
+G+ VL+ +G + + G TEFA+G WVGVELD P GKNDG+V G RYF PK G+F
Sbjct: 296 LGDRVLLD-GQKTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYFICPPKQGLF 354
Query: 145 VRADKL 150
K+
Sbjct: 355 ASVSKI 360
>sp|Q9VJE5|CL190_DROME Restin homolog OS=Drosophila melanogaster GN=CLIP-190 PE=1 SV=1
Length = 1690
Score = 72.4 bits (176), Expect = 1e-12, Method: Composition-based stats.
Identities = 36/75 (48%), Positives = 47/75 (62%)
Query: 98 GVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDRRGR 157
G++ Y+G T+FA G W GVELD P+GKNDGTV RYFE +PK+G+FV K+ +
Sbjct: 254 GILRYLGETQFAPGNWCGVELDEPSGKNDGTVDDIRYFECKPKYGVFVPIAKVSLSPSSK 313
Query: 158 AMRSGGTGAMRRSTS 172
R TG+ TS
Sbjct: 314 KTRLSRTGSRESLTS 328
Score = 67.4 bits (163), Expect = 4e-11, Method: Composition-based stats.
Identities = 33/53 (62%), Positives = 36/53 (67%)
Query: 98 GVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKL 150
G IA+IG T FAAG W GV LD P GKNDG V G RYF+ PK GIF R +L
Sbjct: 137 GQIAFIGDTHFAAGEWAGVVLDEPNGKNDGCVSGKRYFQCEPKRGIFSRLTRL 189
>sp|Q20728|TBCB_CAEEL Tubulin-specific chaperone B OS=Caenorhabditis elegans GN=F53F4.3
PE=1 SV=1
Length = 229
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 36/49 (73%)
Query: 98 GVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVR 146
G +AY+G T+F G WVGV+ D P GKNDG+V G RYF+ PK+G FVR
Sbjct: 164 GEVAYVGATKFKEGVWVGVKYDEPVGKNDGSVAGVRYFDCDPKYGGFVR 212
>sp|Q54Z01|TBCB_DICDI Tubulin-specific chaperone B OS=Dictyostelium discoideum GN=tbcb
PE=3 SV=1
Length = 270
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 39/54 (72%)
Query: 98 GVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLI 151
G + Y+G EF++G W+GVELD P GKNDG+V+G +YF+ PK+G F + ++
Sbjct: 208 GKVQYVGTVEFSSGVWIGVELDLPLGKNDGSVKGKQYFQCSPKYGCFAKPKNVL 261
>sp|O55156|CLIP2_RAT CAP-Gly domain-containing linker protein 2 OS=Rattus norvegicus
GN=Clip2 PE=1 SV=1
Length = 1046
Score = 71.2 bits (173), Expect = 3e-12, Method: Composition-based stats.
Identities = 42/99 (42%), Positives = 58/99 (58%), Gaps = 5/99 (5%)
Query: 54 SSTRRSSQSRASYPMSGDQSFDDVTLPEWVCIGESVLIRPYNSSGVIAYIGPTEFAAGTW 113
SS + ++S ++ SG D L +G+ VL+ +GV+ Y+G T+FA G W
Sbjct: 195 SSVKTGNESGSNLSDSGSVKRGDKDLH----LGDRVLVGG-TKTGVVRYVGETDFAKGEW 249
Query: 114 VGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQ 152
GVELD P GKNDG V GTRYF+ PK G+F K+I+
Sbjct: 250 CGVELDEPLGKNDGAVAGTRYFQCPPKFGLFAPIHKVIR 288
Score = 65.5 bits (158), Expect = 2e-10, Method: Composition-based stats.
Identities = 39/81 (48%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 85 IGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 144
+GE V + GV+ Y+G T+FA G W GV LD P GKNDG V G RYFE GIF
Sbjct: 82 VGERVWVNGVKP-GVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGGLRYFECPALQGIF 140
Query: 145 VRADKLIQDRRGRAMRSGGTG 165
R KL R+ A SG G
Sbjct: 141 TRPSKLT--RQPAAEGSGSDG 159
>sp|O42184|CLIP1_CHICK CAP-Gly domain-containing linker protein 1 OS=Gallus gallus
GN=CLIP1 PE=2 SV=1
Length = 1433
Score = 71.2 bits (173), Expect = 3e-12, Method: Composition-based stats.
Identities = 33/68 (48%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 85 IGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 144
IG+ VL+ +GV+ ++G T+FA G W GVELD P GKNDG V GTRYF+ +P++G+F
Sbjct: 217 IGDRVLVGG-TKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPRYGLF 275
Query: 145 VRADKLIQ 152
K+ +
Sbjct: 276 APVHKVTK 283
Score = 69.3 bits (168), Expect = 1e-11, Method: Composition-based stats.
Identities = 33/66 (50%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 85 IGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 144
+GE V + N G I ++G T+FA G W G+ LD P GKNDG+V G RYF+ P GIF
Sbjct: 61 VGERVWVNG-NKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLRGIF 119
Query: 145 VRADKL 150
R KL
Sbjct: 120 TRPSKL 125
>sp|Q9Z0H8|CLIP2_MOUSE CAP-Gly domain-containing linker protein 2 OS=Mus musculus GN=Clip2
PE=1 SV=2
Length = 1047
Score = 71.2 bits (173), Expect = 3e-12, Method: Composition-based stats.
Identities = 42/99 (42%), Positives = 58/99 (58%), Gaps = 5/99 (5%)
Query: 54 SSTRRSSQSRASYPMSGDQSFDDVTLPEWVCIGESVLIRPYNSSGVIAYIGPTEFAAGTW 113
SS + ++S ++ SG D L +G+ VL+ +GV+ Y+G T+FA G W
Sbjct: 195 SSVKTGNESGSNLSDSGSVKRGDKDLH----LGDRVLVGG-TKTGVVRYVGETDFAKGEW 249
Query: 114 VGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQ 152
GVELD P GKNDG V GTRYF+ PK G+F K+I+
Sbjct: 250 CGVELDEPLGKNDGAVAGTRYFQCPPKFGLFAPIHKVIR 288
Score = 65.1 bits (157), Expect = 2e-10, Method: Composition-based stats.
Identities = 34/68 (50%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 85 IGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 144
+GE V + GV+ Y+G T+FA G W GV LD P GKNDG V G RYFE GIF
Sbjct: 82 VGERVWVNGVKP-GVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGGVRYFECPALQGIF 140
Query: 145 VRADKLIQ 152
R KL +
Sbjct: 141 TRPSKLTR 148
>sp|Q922J3|CLIP1_MOUSE CAP-Gly domain-containing linker protein 1 OS=Mus musculus GN=Clip1
PE=1 SV=1
Length = 1391
Score = 70.9 bits (172), Expect = 4e-12, Method: Composition-based stats.
Identities = 45/143 (31%), Positives = 73/143 (51%), Gaps = 7/143 (4%)
Query: 10 TISSDMASSSLTVSSEMDSCSDLDKRSSSSSLSSHDENKVVRRKSSTRRSSQSRASYPMS 69
T S +++ VSS + S++ + S S+ + + T S S S S
Sbjct: 144 TASPLSTAAATMVSSSPATPSNIPHKPSQSTAKEPSATPQISNLTKTASESISNLSEAGS 203
Query: 70 GDQSFDDVTLPEWVCIGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTV 129
+ ++ + + V +G + +GV+ ++G T+FA G W GVELD P GKNDG V
Sbjct: 204 VKKGERELKVGDRVLVGGT-------KAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAV 256
Query: 130 QGTRYFESRPKHGIFVRADKLIQ 152
GTRYF+ +PK+G+F K+ +
Sbjct: 257 AGTRYFQCQPKYGLFAPVHKVTK 279
Score = 68.9 bits (167), Expect = 1e-11, Method: Composition-based stats.
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 85 IGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 144
+GE V + N G I ++G T+FA G W G+ LD P GKNDG+V G RYF+ P GIF
Sbjct: 60 VGERVWVNG-NKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIF 118
Query: 145 VRADKLIQDRRGRAMRSGGTGAMRRSTS 172
R KL + + +G A R+ S
Sbjct: 119 TRPSKLTRKVQAEDEANGLQAAPGRTAS 146
>sp|P30622|CLIP1_HUMAN CAP-Gly domain-containing linker protein 1 OS=Homo sapiens GN=CLIP1
PE=1 SV=2
Length = 1438
Score = 70.5 bits (171), Expect = 5e-12, Method: Composition-based stats.
Identities = 45/146 (30%), Positives = 74/146 (50%), Gaps = 7/146 (4%)
Query: 7 SSLTISSDMASSSLTVSSEMDSCSDLDKRSSSSSLSSHDENKVVRRKSSTRRSSQSRASY 66
+S S S++ VSS + S++ ++ S + + + T S S S
Sbjct: 142 ASRATSPLCTSTASMVSSSPSTPSNIPQKPSQPAAKEPSATPPISNLTKTASESISNLSE 201
Query: 67 PMSGDQSFDDVTLPEWVCIGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKND 126
S + ++ + + V +G + +GV+ ++G T+FA G W GVELD P GKND
Sbjct: 202 AGSIKKGERELKIGDRVLVGGT-------KAGVVRFLGETDFAKGEWCGVELDEPLGKND 254
Query: 127 GTVQGTRYFESRPKHGIFVRADKLIQ 152
G V GTRYF+ +PK+G+F K+ +
Sbjct: 255 GAVAGTRYFQCQPKYGLFAPVHKVTK 280
Score = 67.8 bits (164), Expect = 3e-11, Method: Composition-based stats.
Identities = 46/117 (39%), Positives = 60/117 (51%), Gaps = 10/117 (8%)
Query: 59 SSQSRASYPMSGDQS--FDDVTLPEWVCIGESVLIRPYNSSGVIAYIGPTEFAAGTWVGV 116
SS+ +S P S Q DD +GE V + N G I ++G T+FA G W G+
Sbjct: 38 SSEKASSTPSSETQEEFVDDFR------VGERVWVNG-NKPGFIQFLGETQFAPGQWAGI 90
Query: 117 ELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDRRGRAMRSG-GTGAMRRSTS 172
LD P GKNDG+V G RYF+ P GIF R KL + + +G T R+TS
Sbjct: 91 VLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKLTRKVQAEDEANGLQTTPASRATS 147
>sp|Q9UDT6|CLIP2_HUMAN CAP-Gly domain-containing linker protein 2 OS=Homo sapiens GN=CLIP2
PE=1 SV=1
Length = 1046
Score = 70.5 bits (171), Expect = 5e-12, Method: Composition-based stats.
Identities = 35/68 (51%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 85 IGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 144
+G+ VL+ +GV+ Y+G T+FA G W GVELD P GKNDG V GTRYF+ PK G+F
Sbjct: 221 LGDRVLVGG-TKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCPPKFGLF 279
Query: 145 VRADKLIQ 152
K+I+
Sbjct: 280 APIHKVIR 287
Score = 64.7 bits (156), Expect = 3e-10, Method: Composition-based stats.
Identities = 34/68 (50%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 85 IGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 144
+GE V + GV+ Y+G T+FA G W GV LD P GKNDG V G RYFE GIF
Sbjct: 81 VGERVWVNGVKP-GVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGGVRYFECPALQGIF 139
Query: 145 VRADKLIQ 152
R KL +
Sbjct: 140 TRPSKLTR 147
>sp|Q5U243|CLIP3_XENLA CAP-Gly domain-containing linker protein 3 OS=Xenopus laevis
GN=clip3 PE=2 SV=1
Length = 534
Score = 69.7 bits (169), Expect = 9e-12, Method: Composition-based stats.
Identities = 33/66 (50%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 85 IGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 144
+G+ +L+ +G + + G TEFA+G WVGVELD P GKNDG+V G RYF PK GIF
Sbjct: 286 LGDRILLDA-EKAGTLRFCGTTEFASGQWVGVELDEPDGKNDGSVGGIRYFICPPKQGIF 344
Query: 145 VRADKL 150
K+
Sbjct: 345 APVSKI 350
Score = 62.4 bits (150), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 85 IGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 144
IG+ VL+ G++ + G T+FA G W G+EL+ PTGK+DG+V G RYF K+G+F
Sbjct: 405 IGDQVLVAG-QKQGIVRFYGKTDFAPGYWFGIELEKPTGKHDGSVFGVRYFTCSAKNGVF 463
>sp|B9EHT4|CLIP3_MOUSE CAP-Gly domain-containing linker protein 3 OS=Mus musculus GN=Clip3
PE=1 SV=1
Length = 547
Score = 69.7 bits (169), Expect = 9e-12, Method: Composition-based stats.
Identities = 30/66 (45%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 85 IGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 144
+G+ VL+ G++ + G T+FA G W G+ELD PTGK+DG+V G RYF P+HG+F
Sbjct: 418 VGDQVLVAG-QKQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGSVFGVRYFTCAPRHGVF 476
Query: 145 VRADKL 150
A ++
Sbjct: 477 APASRI 482
Score = 68.9 bits (167), Expect = 1e-11, Method: Composition-based stats.
Identities = 33/66 (50%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 85 IGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 144
+G+ VL+ +G + + G TEFA+G WVGVELD P GKNDG+V G RYF PK G+F
Sbjct: 296 LGDRVLLDG-QKTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYFICPPKQGLF 354
Query: 145 VRADKL 150
K+
Sbjct: 355 ASVSKV 360
>sp|Q6PCJ1|DCTN1_XENLA Dynactin subunit 1 OS=Xenopus laevis GN=dctn1 PE=2 SV=1
Length = 1232
Score = 69.7 bits (169), Expect = 9e-12, Method: Composition-based stats.
Identities = 34/66 (51%), Positives = 40/66 (60%)
Query: 85 IGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 144
+G V + G +AY+G T FA G WVGV LD GKNDGTVQG RYF HGIF
Sbjct: 12 VGSRVEVIGKGYRGTVAYVGATLFATGKWVGVILDDSKGKNDGTVQGRRYFTCEENHGIF 71
Query: 145 VRADKL 150
VR ++
Sbjct: 72 VRQSQI 77
>sp|Q8CI96|CLIP4_MOUSE CAP-Gly domain-containing linker protein 4 OS=Mus musculus GN=Clip4
PE=1 SV=1
Length = 704
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 64/119 (53%), Gaps = 14/119 (11%)
Query: 37 SSSSLSSHDE----NKVVRRKSSTRRS-SQSRASYPMSGDQSFDDVTLPEWVCIGESVLI 91
S++S SS E N + K++ RRS S S + + G V L E G VL+
Sbjct: 580 STTSASSQKEINRRNAFAKTKTTLRRSWSSSTTAGGLEGT-----VKLHE----GSQVLL 630
Query: 92 RPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKL 150
N + Y+GPT+FA+G W+G+EL + GKNDG V RYF +P +G+ VR ++
Sbjct: 631 TSSNEMATVRYVGPTDFASGIWLGLELRSAKGKNDGAVGDKRYFTCKPNYGVLVRPSRV 689
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 40/60 (66%)
Query: 98 GVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDRRGR 157
G + + G TEFA+G W G+ELD P GKN+G+V +YF+ PK+GIF K+ + + GR
Sbjct: 297 GTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGRVQYFKCAPKYGIFAPLSKISKLKDGR 356
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 85 IGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 144
+GE VL+ G I + G T FA G W G+EL+ P GKNDG+V G +YF P++GIF
Sbjct: 486 LGERVLVV-GQRVGTIKFFGTTNFAPGYWYGIELEKPHGKNDGSVGGVQYFSCSPRYGIF 544
>sp|Q66HD5|CLIP4_RAT CAP-Gly domain-containing linker protein 4 OS=Rattus norvegicus
GN=Clip4 PE=2 SV=1
Length = 599
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 40/60 (66%)
Query: 98 GVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDRRGR 157
G + + G TEFA+G W G+ELD P GKN+G+V +YF+ PK+GIF K+ + + GR
Sbjct: 297 GTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGRVQYFKCAPKYGIFAPLSKITKVKDGR 356
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 85 IGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 144
+GE VL+ G I + G T FA G W G+EL+ P GKNDG+V G +YF P++GIF
Sbjct: 487 LGERVLVV-GQRVGTIKFFGTTNFAPGYWYGIELEKPHGKNDGSVGGVQYFSCSPRYGIF 545
>sp|Q9D1E6|TBCB_MOUSE Tubulin-folding cofactor B OS=Mus musculus GN=Tbcb PE=1 SV=2
Length = 244
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 34/49 (69%)
Query: 98 GVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVR 146
G + Y+G T+F G WVGV D P GKNDG+V G RYFE + K+G FV+
Sbjct: 177 GTVMYVGLTDFKPGYWVGVRYDEPLGKNDGSVNGKRYFECQAKYGAFVK 225
>sp|O08788|DCTN1_MOUSE Dynactin subunit 1 OS=Mus musculus GN=Dctn1 PE=1 SV=3
Length = 1281
Score = 68.6 bits (166), Expect = 2e-11, Method: Composition-based stats.
Identities = 42/100 (42%), Positives = 51/100 (51%), Gaps = 10/100 (10%)
Query: 51 RRKSSTRRSSQSRASYPMSGDQSFDDVTLPEWVCIGESVLIRPYNSSGVIAYIGPTEFAA 110
RR S+R S SR S S + +G V + G +AY+G T FA
Sbjct: 5 RRHMSSRTPSGSRMSTEASARP----------LRVGSRVEVIGKGHRGTVAYVGATLFAT 54
Query: 111 GTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKL 150
G WVGV LD GKNDGTVQG +YF HGIFVR ++
Sbjct: 55 GKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQSQI 94
>sp|Q99426|TBCB_HUMAN Tubulin-folding cofactor B OS=Homo sapiens GN=TBCB PE=1 SV=2
Length = 244
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 34/49 (69%)
Query: 98 GVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVR 146
G + Y+G T+F G W+GV D P GKNDG+V G RYFE + K+G FV+
Sbjct: 177 GTVMYVGLTDFKPGYWIGVRYDEPLGKNDGSVNGKRYFECQAKYGAFVK 225
>sp|Q5E951|TBCB_BOVIN Tubulin-folding cofactor B OS=Bos taurus GN=TBCB PE=2 SV=1
Length = 244
Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 34/49 (69%)
Query: 98 GVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVR 146
G + Y+G T+F G W+G+ D P GKNDG+V G RYFE + K+G FV+
Sbjct: 177 GTVMYVGLTDFKPGYWIGIRYDEPLGKNDGSVNGKRYFECQAKYGAFVK 225
>sp|P28023|DCTN1_RAT Dynactin subunit 1 OS=Rattus norvegicus GN=Dctn1 PE=2 SV=2
Length = 1280
Score = 66.2 bits (160), Expect = 9e-11, Method: Composition-based stats.
Identities = 33/66 (50%), Positives = 40/66 (60%)
Query: 85 IGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 144
+G V + G +AY+G T FA G WVGV LD GKNDGTVQG +YF HGIF
Sbjct: 29 VGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIF 88
Query: 145 VRADKL 150
VR ++
Sbjct: 89 VRQSQI 94
>sp|Q14203|DCTN1_HUMAN Dynactin subunit 1 OS=Homo sapiens GN=DCTN1 PE=1 SV=3
Length = 1278
Score = 66.2 bits (160), Expect = 1e-10, Method: Composition-based stats.
Identities = 33/66 (50%), Positives = 40/66 (60%)
Query: 85 IGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 144
+G V + G +AY+G T FA G WVGV LD GKNDGTVQG +YF HGIF
Sbjct: 29 VGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIF 88
Query: 145 VRADKL 150
VR ++
Sbjct: 89 VRQSQI 94
>sp|P35458|DCTN1_CHICK Dynactin subunit 1 OS=Gallus gallus GN=DCTN1 PE=2 SV=2
Length = 1224
Score = 64.3 bits (155), Expect = 4e-10, Method: Composition-based stats.
Identities = 32/66 (48%), Positives = 39/66 (59%)
Query: 85 IGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 144
+G V + G +AY+G T A G WVGV LD GKNDGTVQG +YF HGIF
Sbjct: 30 VGSRVEVIGKGHRGTVAYVGATLXATGKWVGVILDEAKGKNDGTVQGRKYFTCEENHGIF 89
Query: 145 VRADKL 150
VR ++
Sbjct: 90 VRQSQI 95
>sp|O42667|SSM4_SCHPO Microtubule-associated protein ssm4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ssm4 PE=1 SV=1
Length = 670
Score = 62.4 bits (150), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/66 (46%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 82 WVCIGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKH 141
++ +G+ VLIR G++ + G T+F +G W+GVEL GKNDG+V+G RYF
Sbjct: 3 YLSVGDEVLIR--GELGIVRFAGSTDFESGIWLGVELLNGKGKNDGSVKGKRYFSCEKGK 60
Query: 142 GIFVRA 147
GIFVRA
Sbjct: 61 GIFVRA 66
>sp|Q10235|ALP11_SCHPO Cell polarity protein alp11 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=alp11 PE=1 SV=1
Length = 234
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 98 GVIAYIG--PTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKL 150
G I YIG P WVGVE D P GKNDGTV G RYF ++ KHG F+R+ ++
Sbjct: 166 GTIRYIGLVPEINNDNLWVGVEFDEPVGKNDGTVSGKRYFNAKNKHGSFLRSSEV 220
>sp|P13496|DCTN1_DROME Dynactin subunit 1 OS=Drosophila melanogaster GN=Gl PE=1 SV=2
Length = 1265
Score = 60.5 bits (145), Expect = 5e-09, Method: Composition-based stats.
Identities = 29/66 (43%), Positives = 41/66 (62%)
Query: 85 IGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 144
+G V + + G +AY+G T FA G WVGV LD P GKN G+++G +YF+ G+F
Sbjct: 8 VGARVELTGKDLLGTVAYVGMTSFAVGKWVGVVLDEPKGKNSGSIKGQQYFQCDENCGMF 67
Query: 145 VRADKL 150
VR +L
Sbjct: 68 VRPTQL 73
>sp|P33420|NIP80_YEAST Protein NIP100 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=NIP100 PE=1 SV=2
Length = 868
Score = 60.1 bits (144), Expect = 7e-09, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 16/88 (18%)
Query: 71 DQSFDDVTLPEWVCIGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQ 130
D + ++L + V + E G + +IG T+FA G W G+ELD P GKNDG+
Sbjct: 9 DTNMQKISLQDTVLVNEM--------KGRVKFIGETQFAKGIWYGIELDKPLGKNDGSAN 60
Query: 131 GTRYFESRPK--------HGIFVRADKL 150
G RYF+ K +G+F + D L
Sbjct: 61 GIRYFDIDLKKANSNGGYYGLFCKKDTL 88
>sp|P34531|YM92_CAEEL Uncharacterized protein M01A8.2 OS=Caenorhabditis elegans
GN=M01A8.2 PE=4 SV=4
Length = 937
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 29/47 (61%)
Query: 98 GVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 144
G + Y+GP G + G+EL P GK+DGT QG YF + P HGIF
Sbjct: 33 GFLRYVGPIHGKDGMFCGIELLEPNGKHDGTFQGVSYFIATPYHGIF 79
>sp|P11709|BIK1_YEAST Nuclear fusion protein BIK1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BIK1 PE=1 SV=1
Length = 440
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 98 GVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESR-PKHGIFVRADKL 150
G + Y+GP + AG + GV+L A GKNDG+ G +YF++ P+ G+F++ K+
Sbjct: 20 GQLKYVGPVDTKAGMFAGVDLLANIGKNDGSFMGKKYFQTEYPQSGLFIQLQKV 73
>sp|Q5U378|TBCE_DANRE Tubulin-specific chaperone E OS=Danio rerio GN=tbce PE=2 SV=2
Length = 521
Score = 53.9 bits (128), Expect = 5e-07, Method: Composition-based stats.
Identities = 27/54 (50%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 98 GVIAYIGPTEFAAGTWVGVELDAPT-GKNDGTVQGTRYFESR-PKHGIFVRADK 149
G + Y+GP AG W+GVE D P GK+DG+ G RYF R P G FVR K
Sbjct: 18 GTVRYVGPVPPTAGVWLGVEWDHPERGKHDGSHDGVRYFTCRHPTGGSFVRPQK 71
>sp|P53904|TBCB_YEAST Tubulin-specific chaperone B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=ALF1 PE=1 SV=1
Length = 254
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 97 SGVIAYIGPTEF-AAGTWVGVELDAPTGKNDGTVQGTRYF-ESRPKHGIFVR 146
++ Y+GP GTW GVE GKNDG + G F P HG FVR
Sbjct: 174 EAILRYVGPLPLDVMGTWCGVEFPEAAGKNDGRINGVTLFGPVAPGHGSFVR 225
>sp|Q55CN0|TBCE_DICDI Tubulin-specific chaperone E OS=Dictyostelium discoideum GN=tbce
PE=3 SV=1
Length = 525
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 75 DDVTLPEWVCIGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPT-GKNDGTVQGTR 133
++ ++ E+ IGE V S G I Y G + G W G+E D P GK+ GTV+G +
Sbjct: 5 NEKSIVEYFYIGERVKGDD-GSVGTIRYQGKVDGFEGNWYGIEWDDPKRGKHQGTVKGKQ 63
Query: 134 YFESRPK-HGIFVRADKLIQ 152
YF+ K G F++ +KLI+
Sbjct: 64 YFKCINKGSGSFMKYEKLIK 83
>sp|Q5RBD9|TBCE_PONAB Tubulin-specific chaperone E OS=Pongo abelii GN=TBCE PE=2 SV=1
Length = 527
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 85 IGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPT-GKNDGTVQGTRYFESR-PKHG 142
IG+ V + +++ + + G AG W+GVE D P GK+DG+ +GT YF+ R P G
Sbjct: 10 IGQRVEVNGEHAT--VRFAGVVPPVAGPWLGVEWDNPERGKHDGSHEGTVYFQCRHPTGG 67
Query: 143 IFVRADKL 150
F+R +K+
Sbjct: 68 SFIRPNKV 75
>sp|Q8CIV8|TBCE_MOUSE Tubulin-specific chaperone E OS=Mus musculus GN=Tbce PE=1 SV=1
Length = 524
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 98 GVIAYIGPTEFAAGTWVGVELDAPT-GKNDGTVQGTRYFESR-PKHGIFVRADKL 150
+ + G AG W+GVE D P GK+DG+ +GT YF+ R P G FVR K+
Sbjct: 21 ATVRFCGAVPPVAGLWLGVEWDNPERGKHDGSHEGTMYFKCRHPTGGSFVRPSKV 75
>sp|Q15813|TBCE_HUMAN Tubulin-specific chaperone E OS=Homo sapiens GN=TBCE PE=1 SV=1
Length = 527
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 98 GVIAYIGPTEFAAGTWVGVELDAPT-GKNDGTVQGTRYFESR-PKHGIFVRADKL 150
+ + G AG W+GVE D P GK+DG+ +GT YF+ R P G F+R +K+
Sbjct: 21 ATVRFAGVVPPVAGPWLGVEWDNPERGKHDGSHEGTVYFKCRHPTGGSFIRPNKV 75
>sp|P79065|TIP1_SCHPO Tip elongation protein 1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=tip1 PE=1 SV=1
Length = 461
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 98 GVIAYIGPTEFAAGTWVGVEL---DAPTGKNDGTVQGTRYFESR--PKHGIFVRADK 149
G + Y G E G +VG+EL A GKN G V G YF+++ K GIFV DK
Sbjct: 16 GFVRYAGEVENRKGVYVGLELLPEFAEFGKNRGVVDGREYFKTKNNEKTGIFVPFDK 72
>sp|Q5FVQ9|TBCE_RAT Tubulin-specific chaperone E OS=Rattus norvegicus GN=Tbce PE=2 SV=1
Length = 524
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 98 GVIAYIGPTEFAAGTWVGVELDAPT-GKNDGTVQGTRYFESR-PKHGIFVRAD 148
+ + G AG W+GVE D P GK+DG+ +GT YF+ R P G FVR +
Sbjct: 21 ATVRFCGAVPPVAGLWLGVEWDNPERGKHDGSHEGTMYFKCRHPTGGSFVRPN 73
>sp|Q32KS0|TBCE_BOVIN Tubulin-specific chaperone E OS=Bos taurus GN=TBCE PE=2 SV=1
Length = 528
Score = 43.9 bits (102), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/43 (51%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Query: 110 AGTWVGVELDAPT-GKNDGTVQGTRYFESR-PKHGIFVRADKL 150
AG W+GVE D P GK+DG+ +GT YF+ R P G F+R K+
Sbjct: 33 AGLWLGVEWDNPERGKHDGSHEGTVYFKCRHPTAGSFIRPHKV 75
>sp|Q5U508|TBCE_XENLA Tubulin-specific chaperone E OS=Xenopus laevis GN=tbce PE=2 SV=1
Length = 522
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 11/69 (15%)
Query: 83 VCIGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAP-TGKNDGTVQGTRYFE-SRPK 140
+C GE +R Y+G G W+GVE D GK++GT +GT+YF S P
Sbjct: 15 ICDGEYATVR---------YVGNVPPTPGLWLGVEWDNHLRGKHNGTHEGTKYFTCSHPT 65
Query: 141 HGIFVRADK 149
G F+R K
Sbjct: 66 GGSFIRLKK 74
>sp|Q80TQ2|CYLD_MOUSE Ubiquitin carboxyl-terminal hydrolase CYLD OS=Mus musculus GN=Cyld
PE=1 SV=2
Length = 952
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 98 GVIAYIGPTEFAAGTWVGVEL-DAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDRRG 156
GVI +IG + G+EL D G DGT +GTRYF K +FV+ D R
Sbjct: 482 GVIRWIGQPPGLSDVLAGLELEDECAGCTDGTFRGTRYFTCALKKALFVKLKSCRPDSRF 541
Query: 157 RAMR 160
+++
Sbjct: 542 ASLQ 545
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 98 GVIAYIGPT---EFAAGTWVGVELDAP---TGKNDGTVQGTRYFESRPKHGIFVRADKL 150
GV+ + GP +G + GVEL G DG QG + F+ G+FV DKL
Sbjct: 144 GVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQGKQLFQCDEDCGVFVALDKL 202
>sp|Q66H62|CYLD_RAT Ubiquitin carboxyl-terminal hydrolase CYLD OS=Rattus norvegicus
GN=Cyld PE=2 SV=1
Length = 953
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 98 GVIAYIGPTEFAAGTWVGVEL-DAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDRRG 156
GVI +IG + G+EL D G DGT +GTRYF K +FV+ D R
Sbjct: 483 GVIRWIGQPPGLSDVLAGLELEDECAGCTDGTFRGTRYFTCALKKALFVKLKSCRPDSRF 542
Query: 157 RAMR 160
+++
Sbjct: 543 ASLQ 546
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 98 GVIAYIGPT---EFAAGTWVGVELDAP---TGKNDGTVQGTRYFESRPKHGIFVRADKL 150
GV+ + GP +G + GVEL G DG QG + F+ G+FV DKL
Sbjct: 144 GVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQGKQLFQCDEDCGVFVALDKL 202
>sp|Q9NQC7|CYLD_HUMAN Ubiquitin carboxyl-terminal hydrolase CYLD OS=Homo sapiens GN=CYLD
PE=1 SV=1
Length = 956
Score = 36.2 bits (82), Expect = 0.12, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 98 GVIAYIGPTEFAAGTWVGVEL-DAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDRR 155
GVI +IG G+EL D G DGT +GTRYF K +FV+ D R
Sbjct: 486 GVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTCALKKALFVKLKSCRPDSR 544
Score = 31.2 bits (69), Expect = 3.4, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 98 GVIAYIGP---TEFAAGTWVGVEL---DAPTGKNDGTVQGTRYFESRPKHGIFVRADKL 150
GV+ + GP +G + GVEL G DG QG + F+ G+FV DKL
Sbjct: 144 GVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQGKQLFQCDEDCGVFVALDKL 202
>sp|Q1RMU2|CYLD_BOVIN Ubiquitin carboxyl-terminal hydrolase CYLD OS=Bos taurus GN=CYLD
PE=2 SV=1
Length = 953
Score = 35.8 bits (81), Expect = 0.13, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 98 GVIAYIGPTEFAAGTWVGVEL-DAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDRR 155
GVI +IG G+EL D G DGT +GTRYF K +FV+ D R
Sbjct: 483 GVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTCALKKALFVKLKSCRPDSR 541
Score = 31.2 bits (69), Expect = 3.7, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 98 GVIAYIGP---TEFAAGTWVGVEL---DAPTGKNDGTVQGTRYFESRPKHGIFVRADKL 150
GV+ + GP +G + GVEL G DG QG + F+ G+FV DKL
Sbjct: 144 GVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQGKQLFQCDEDCGVFVALDKL 202
>sp|Q5RED8|CYLD_PONAB Ubiquitin carboxyl-terminal hydrolase CYLD OS=Pongo abelii GN=CYLD
PE=2 SV=1
Length = 956
Score = 35.8 bits (81), Expect = 0.13, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 98 GVIAYIGPTEFAAGTWVGVEL-DAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDRR 155
GVI +IG G+EL D G DGT +GTRYF K +FV+ D R
Sbjct: 486 GVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTCALKKALFVKLKSCRPDSR 544
Score = 31.2 bits (69), Expect = 3.8, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 98 GVIAYIGP---TEFAAGTWVGVEL---DAPTGKNDGTVQGTRYFESRPKHGIFVRADKL 150
GV+ + GP +G + GVEL G DG QG + F+ G+FV DKL
Sbjct: 144 GVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQGKQLFQCDEDCGVFVALDKL 202
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.124 0.345
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,371,850
Number of Sequences: 539616
Number of extensions: 2255425
Number of successful extensions: 10221
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 91
Number of HSP's that attempted gapping in prelim test: 6971
Number of HSP's gapped (non-prelim): 2126
length of query: 173
length of database: 191,569,459
effective HSP length: 109
effective length of query: 64
effective length of database: 132,751,315
effective search space: 8496084160
effective search space used: 8496084160
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)