Query psy3317
Match_columns 173
No_of_seqs 141 out of 940
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 21:53:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3317.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3317hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ixd_A Cylindromatosis tumour- 100.0 3.8E-29 1.3E-33 189.1 9.8 80 82-161 17-98 (104)
2 4b6m_A Tubulin-specific chaper 100.0 6E-29 2E-33 182.1 9.1 72 82-153 5-77 (84)
3 2e3i_A Restin; CAP-Gly, cytopl 100.0 7.3E-29 2.5E-33 181.9 9.1 80 82-162 2-81 (86)
4 1lpl_A Hypothetical 25.4 kDa p 100.0 3.8E-29 1.3E-33 186.2 6.5 79 80-159 9-90 (95)
5 3rdv_A CAP-Gly domain-containi 100.0 1.1E-28 3.8E-33 175.6 8.2 70 82-152 2-71 (72)
6 2cp2_A CLIP-115, KIAA0291; mic 100.0 2.3E-28 8E-33 182.2 9.9 76 78-154 14-89 (95)
7 2cow_A Kinesin-like protein KI 100.0 2.6E-28 8.9E-33 183.6 9.6 80 76-156 17-96 (100)
8 1txq_A Dynactin 1; protein com 100.0 2.1E-28 7.3E-33 181.5 8.9 76 81-156 11-86 (93)
9 1whk_A 1700024K14RIK, riken cD 100.0 1.5E-28 5E-33 182.0 7.8 74 80-153 10-83 (91)
10 1whh_A Clipr-59; microtubule b 100.0 5.7E-28 1.9E-32 182.3 11.0 77 81-158 24-100 (102)
11 1whl_A Cylindromatosis tumor s 99.9 3.4E-28 1.2E-32 180.7 9.2 77 81-157 6-92 (95)
12 2e3h_A Restin; CAP-Gly, cytopl 99.9 5.3E-28 1.8E-32 178.7 9.7 75 83-159 2-76 (90)
13 2cp3_A CLIP-115, KIAA0291; mic 99.9 6.3E-28 2.1E-32 176.2 9.5 72 81-153 6-77 (84)
14 2cp6_A Restin; microtubule bin 99.9 3.8E-27 1.3E-31 191.8 14.0 73 80-153 36-108 (172)
15 2z0w_A CAP-Gly domain-containi 99.9 3.7E-28 1.2E-32 181.4 6.7 76 81-157 9-84 (96)
16 2coy_A Dynactin-1; microtubule 99.9 1.4E-27 4.8E-32 182.8 9.7 73 81-153 32-104 (112)
17 2cp0_A Clipr-59 protein, clipr 99.9 1.5E-27 5.2E-32 177.8 9.4 73 82-155 16-88 (95)
18 1whj_A 1700024K14RIK, riken cD 99.9 1.8E-27 6E-32 179.6 9.6 76 82-158 24-99 (102)
19 2cp5_A Restin; microtubule bin 99.9 5.1E-27 1.7E-31 185.9 11.9 76 79-155 61-136 (141)
20 1whg_A Tubulin specific chaper 99.9 2.7E-27 9.3E-32 181.2 8.5 74 80-153 30-106 (113)
21 2coz_A CAP350, centrosome-asso 99.9 7.8E-27 2.7E-31 181.0 10.7 71 81-152 30-100 (122)
22 1whm_A Cylindromatosis tumor s 99.9 1.7E-25 5.9E-30 166.3 9.7 73 82-154 9-86 (92)
23 3qyh_B CO-type nitrIle hydrata 39.8 14 0.00047 30.6 2.1 18 76-93 124-141 (219)
24 2zzd_A Thiocyanate hydrolase s 38.0 12 0.00042 28.7 1.4 18 76-93 30-47 (126)
25 3hht_B NitrIle hydratase beta 37.7 13 0.00045 31.0 1.7 18 76-93 135-152 (229)
26 1ugp_B NitrIle hydratase beta 34.4 17 0.00059 30.1 1.9 18 76-93 132-149 (226)
27 3pie_A 5'->3' exoribonuclease 33.4 50 0.0017 33.5 5.3 68 82-157 1065-1139(1155)
28 1at0_A 17-hedgehog; developmen 28.9 99 0.0034 22.9 5.2 56 82-148 20-79 (145)
29 3lnn_A Membrane fusion protein 27.9 1.8E+02 0.0063 23.6 7.2 71 82-153 221-298 (359)
30 3udc_A Small-conductance mecha 23.2 51 0.0018 27.1 2.9 23 82-106 128-150 (285)
31 2vv5_A MSCS, small-conductance 20.8 55 0.0019 26.9 2.6 23 82-106 129-151 (286)
32 4fm4_B NitrIle hydratase beta 20.3 59 0.002 26.4 2.6 41 81-121 117-181 (206)
No 1
>1ixd_A Cylindromatosis tumour-suppressor CYLD; structural genomics, riken structural genomics/proteomics initiative, RSGI, antitumor protein; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.96 E-value=3.8e-29 Score=189.12 Aligned_cols=80 Identities=30% Similarity=0.442 Sum_probs=75.2
Q ss_pred cccccceEEEeCC-CceEEEEEEeecCCCCceEEEEEE-cCCCCCCCcEECCEEeeeeCCCCeeeEecCcccccCCCccc
Q psy3317 82 WVCIGESVLIRPY-NSSGVIAYIGPTEFAAGTWVGVEL-DAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDRRGRAM 159 (173)
Q Consensus 82 ~l~VGdRV~V~~~-~~~GtVRYIG~l~~~~GiwvGVEL-Dep~GknDGtv~G~rYF~C~p~~GiFVk~~kV~~d~~~~a~ 159 (173)
.|+||+||.|... .++|||||||++++.+|+|+|||| |+|.|||||+++|+|||+|+|+||+||++++|..+.+|+++
T Consensus 17 ~l~VG~RV~V~~~~~~~GtVryvG~v~~~~G~wvGVEldDep~GKnDGsv~G~rYF~C~p~~G~FVr~~~v~~~~rf~~~ 96 (104)
T 1ixd_A 17 GLEVGSLAEVKENPPFYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTCALKKALFVKLKSCRPDSRFASL 96 (104)
T ss_dssp CCCTTSEEEECSSSCCCEEEEEEECCSSSCCCEEEEEESSCCTTCBSSEETTEECSCCCTTCBEEEEGGGEEECCTTCCC
T ss_pred ccccCCEEEECcCCCcEEEEEEecccCCCCceEEEEEecCCCCCCCCCEECCEEeeecCCCcEEEEcHHHceeccccccC
Confidence 5899999999732 588999999999999999999999 89999999999999999999999999999999999999998
Q ss_pred cC
Q psy3317 160 RS 161 (173)
Q Consensus 160 ~~ 161 (173)
.+
T Consensus 97 ~~ 98 (104)
T 1ixd_A 97 QP 98 (104)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 2
>4b6m_A Tubulin-specific chaperone, putative; structural protein; 1.59A {Trypanosoma brucei}
Probab=99.96 E-value=6e-29 Score=182.13 Aligned_cols=72 Identities=40% Similarity=0.804 Sum_probs=67.5
Q ss_pred cccccceEEEeCCCceEEEEEEeecC-CCCceEEEEEEcCCCCCCCcEECCEEeeeeCCCCeeeEecCccccc
Q psy3317 82 WVCIGESVLIRPYNSSGVIAYIGPTE-FAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQD 153 (173)
Q Consensus 82 ~l~VGdRV~V~~~~~~GtVRYIG~l~-~~~GiwvGVELDep~GknDGtv~G~rYF~C~p~~GiFVk~~kV~~d 153 (173)
.|+||+||.|.....+|||||+|+++ +.+|+|+|||||+|.|||||+++|+|||+|+|+||+||++++|...
T Consensus 5 ~i~vG~Rv~v~~~~~~G~VryvG~v~~~~~G~wvGVelDep~GkndGsv~G~rYF~C~~~~G~Fvr~~~v~~g 77 (84)
T 4b6m_A 5 TIHVGDRCLCRPGDRLGSVRFVGRVASLKPGYWVGVEFDEPVGKGDGTVKGTRVFQCQPNYGGFLRPDQVEVG 77 (84)
T ss_dssp CCCTTCEEEETTTTEEEEEEEEEECTTSCSSEEEEEEESSSCCSBSSEETTEESSCCCTTSEEEECGGGEEEC
T ss_pred CcccCCEEEEcCCCeEEEEEEEecCCCCCCCEEEEEEECCCCCCcCCEECCEEEEecCCCeEEEecHHHeEEC
Confidence 58999999997667899999999986 5789999999999999999999999999999999999999999975
No 3
>2e3i_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 2.00A {Homo sapiens} SCOP: b.34.10.1
Probab=99.95 E-value=7.3e-29 Score=181.86 Aligned_cols=80 Identities=43% Similarity=0.825 Sum_probs=70.7
Q ss_pred cccccceEEEeCCCceEEEEEEeecCCCCceEEEEEEcCCCCCCCcEECCEEeeeeCCCCeeeEecCcccccCCCccccC
Q psy3317 82 WVCIGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDRRGRAMRS 161 (173)
Q Consensus 82 ~l~VGdRV~V~~~~~~GtVRYIG~l~~~~GiwvGVELDep~GknDGtv~G~rYF~C~p~~GiFVk~~kV~~d~~~~a~~~ 161 (173)
.|+||+||.|.. ...|||||+|++++.+|+|+|||||+|.|||||+++|+|||+|+|+||+||++++|....+|..-.+
T Consensus 2 ~~~vG~rv~v~g-~~~GtVryvG~~~~~~G~wvGVelDep~GKndGsv~G~rYF~c~~~~G~Fvr~~~v~~~~~~~~~~~ 80 (86)
T 2e3i_A 2 DFRVGERVWVNG-NKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKLTRKVQAEDEAN 80 (86)
T ss_dssp CCCTTCEEEETT-TEEEEEEEEEECSSSSSEEEEEEESSSCSSBSSEETTEESSCCSTTCEEEECGGGEESSCCC-----
T ss_pred CccCCCEEEECC-CcEEEEEEeeeCCCCCCcEEEEEeCCCCCccCCEECCEEeeecCCCeEEEEcHHHcccccchhhhcc
Confidence 589999999973 5799999999999999999999999999999999999999999999999999999999888875544
Q ss_pred C
Q psy3317 162 G 162 (173)
Q Consensus 162 ~ 162 (173)
.
T Consensus 81 ~ 81 (86)
T 2e3i_A 81 G 81 (86)
T ss_dssp -
T ss_pred C
Confidence 4
No 4
>1lpl_A Hypothetical 25.4 kDa protein F53F4.3 in chromosome V; structural genomics, CAP-Gly domain, cytoskeleton, tubulin, PSI; 1.77A {Caenorhabditis elegans} SCOP: b.34.10.1 PDB: 1tov_A
Probab=99.95 E-value=3.8e-29 Score=186.16 Aligned_cols=79 Identities=38% Similarity=0.712 Sum_probs=72.1
Q ss_pred CCcccccceEEEe-CC--CceEEEEEEeecCCCCceEEEEEEcCCCCCCCcEECCEEeeeeCCCCeeeEecCcccccCCC
Q psy3317 80 PEWVCIGESVLIR-PY--NSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDRRG 156 (173)
Q Consensus 80 ~~~l~VGdRV~V~-~~--~~~GtVRYIG~l~~~~GiwvGVELDep~GknDGtv~G~rYF~C~p~~GiFVk~~kV~~d~~~ 156 (173)
+..++||+||.|. .. ..+|||||+|++++.+|+|+|||||+|.|||||+++|+|||+|+|+||+||++++|..+ +|
T Consensus 9 ~~~~~vG~rv~V~~~g~~~~~GtVryvG~~~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~G~Fvr~~~v~~g-df 87 (95)
T 1lpl_A 9 AKNIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDGSVAGVRYFDCDPKYGGFVRPVDVKVG-DF 87 (95)
T ss_dssp HHTCCTTCEEEECCTTSCCEEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEECSCCCTTSEEEECGGGEEES-CC
T ss_pred hhcCCCCCEEEEccCCCCceEEEEEEecccCCCCCEEEEEEccCCCCccCCEECCEEEeEeCCCEEEEEcHHHceEC-CC
Confidence 4468999999997 22 58999999999999999999999999999999999999999999999999999999987 66
Q ss_pred ccc
Q psy3317 157 RAM 159 (173)
Q Consensus 157 ~a~ 159 (173)
...
T Consensus 88 p~~ 90 (95)
T 1lpl_A 88 PEL 90 (95)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 5
>3rdv_A CAP-Gly domain-containing linker protein 1; cytoskeletal protein, CAP Gly protein complex, structural PR; HET: BME; 1.75A {Homo sapiens} PDB: 2qk0_A
Probab=99.95 E-value=1.1e-28 Score=175.57 Aligned_cols=70 Identities=47% Similarity=0.905 Sum_probs=66.0
Q ss_pred cccccceEEEeCCCceEEEEEEeecCCCCceEEEEEEcCCCCCCCcEECCEEeeeeCCCCeeeEecCcccc
Q psy3317 82 WVCIGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQ 152 (173)
Q Consensus 82 ~l~VGdRV~V~~~~~~GtVRYIG~l~~~~GiwvGVELDep~GknDGtv~G~rYF~C~p~~GiFVk~~kV~~ 152 (173)
.|+||+||.|. ....|||||+|++++.+|+|+|||||+|.|||||+++|+|||+|+|+||+||++++|..
T Consensus 2 ~~~vG~rv~v~-g~~~G~VryvG~~~~~~g~w~GVeld~p~GkndGsv~G~rYF~c~p~~G~Fv~~~kvsr 71 (72)
T 3rdv_A 2 DFRVGERVWVN-GNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKLTR 71 (72)
T ss_dssp CCCTTCEEEET-TTEEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEESCCCSTTCEEEECGGGEEC
T ss_pred CcccCCEEEEC-CCCEEEEEEeeeCCCCCceEEEEEECCCCCccCCEECCEEeCccCCCCEEEecHHHccc
Confidence 58999999997 35689999999999999999999999999999999999999999999999999999863
No 6
>2cp2_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 PDB: 2cp7_A
Probab=99.95 E-value=2.3e-28 Score=182.22 Aligned_cols=76 Identities=45% Similarity=0.814 Sum_probs=69.9
Q ss_pred CCCCcccccceEEEeCCCceEEEEEEeecCCCCceEEEEEEcCCCCCCCcEECCEEeeeeCCCCeeeEecCcccccC
Q psy3317 78 TLPEWVCIGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDR 154 (173)
Q Consensus 78 ~l~~~l~VGdRV~V~~~~~~GtVRYIG~l~~~~GiwvGVELDep~GknDGtv~G~rYF~C~p~~GiFVk~~kV~~d~ 154 (173)
..++.|+||+||.|.. ..+|||||+|++++.+|+|+|||||+|.|||||+++|+|||+|+|+||+||++++|....
T Consensus 14 ~~~~~~~vG~rV~V~g-~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~G~Fvr~~kv~~~p 89 (95)
T 2cp2_A 14 DFLGDFVVGERVWVNG-VKPGVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGGVRYFECPALQGIFTRPSKLTRQP 89 (95)
T ss_dssp SSCCSCCTTCEEEGGG-SCEEEEEEEEECSSSCSEEEEEEESSSCSSBBSEETTEECCCCCTTTEEEECGGGCCSSC
T ss_pred hhhhcCcCCCEEEECC-ceEEEEEEecccCCCCCEEEEEEecCCCCccCCEECCEEecccCCCeEEEEcHHHCccCC
Confidence 4455799999999983 579999999999999999999999999999999999999999999999999999998643
No 7
>2cow_A Kinesin-like protein KIF13B; microtubule binding, cytoskeleton associated protein, KIAA0639, kinesin-like protein gakin, structural genomics; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.95 E-value=2.6e-28 Score=183.59 Aligned_cols=80 Identities=44% Similarity=0.933 Sum_probs=73.6
Q ss_pred ccCCCCcccccceEEEeCCCceEEEEEEeecCCCCceEEEEEEcCCCCCCCcEECCEEeeeeCCCCeeeEecCcccccCC
Q psy3317 76 DVTLPEWVCIGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDRR 155 (173)
Q Consensus 76 ~~~l~~~l~VGdRV~V~~~~~~GtVRYIG~l~~~~GiwvGVELDep~GknDGtv~G~rYF~C~p~~GiFVk~~kV~~d~~ 155 (173)
...+|.+|+||+||.|. ...+|||||+|++++.+|+|+|||||+|.|||||+++|+|||+|+|+||+||++++|.+...
T Consensus 17 ~~~~~~~l~vG~rV~V~-g~~~GtVryvG~~~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~GiFvr~~~v~~~~~ 95 (100)
T 2cow_A 17 ADEVPEWLREGEFVTVG-AHKTGVVRYVGPADFQEGTWVGVELDLPSGKNDGSIGGKQYFRCNPGYGLLVRPSRVRRATS 95 (100)
T ss_dssp CCCCCSSCCTTCEEECS-SSCEEEEEEEECCSSSSSCEEEEECSSSCCSCSSEETTEECCCSCTTCCEEECGGGCEECCC
T ss_pred cccCCccccCCCEEEEC-CCcEEEEEEeeeCCCCCCeEEEEEeCCCCCcCCCEECCEEeeecCCCeEEEecHHHeeECCC
Confidence 34568889999999996 36899999999999999999999999999999999999999999999999999999998655
Q ss_pred C
Q psy3317 156 G 156 (173)
Q Consensus 156 ~ 156 (173)
.
T Consensus 96 ~ 96 (100)
T 2cow_A 96 G 96 (100)
T ss_dssp C
T ss_pred C
Confidence 3
No 8
>1txq_A Dynactin 1; protein complex, structural protein/protein binding complex; 1.80A {Homo sapiens} SCOP: b.34.10.1 PDB: 2hqh_A 2hkq_B 2hkn_A 2pzo_A 3e2u_A 2hl5_C 2hl3_A 3tq7_P
Probab=99.95 E-value=2.1e-28 Score=181.55 Aligned_cols=76 Identities=45% Similarity=0.760 Sum_probs=69.4
Q ss_pred CcccccceEEEeCCCceEEEEEEeecCCCCceEEEEEEcCCCCCCCcEECCEEeeeeCCCCeeeEecCcccccCCC
Q psy3317 81 EWVCIGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDRRG 156 (173)
Q Consensus 81 ~~l~VGdRV~V~~~~~~GtVRYIG~l~~~~GiwvGVELDep~GknDGtv~G~rYF~C~p~~GiFVk~~kV~~d~~~ 156 (173)
..|+||+||.|...+.+|||||+|++++.+|+|+|||||+|.|||||+++|+|||+|+|+||+||++++|..-.+.
T Consensus 11 ~~~~vG~rv~v~~~~~~GtVryvG~~~~~~G~wvGVelDep~GKndGsv~G~rYF~C~~~~G~Fvr~~~v~~~~~~ 86 (93)
T 1txq_A 11 RPLRVGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQSQIQVFEDG 86 (93)
T ss_dssp CCCCTTCEEEETTTCCEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEESCCCCTTCEEEECGGGEEECC--
T ss_pred ccCCCCCEEEECCCCeEEEEEEeeecCCCCCcEEEEEeCCCCCCCCCEECCEEeeecCCCeEEEEcHHHeEEccCC
Confidence 3699999999975568999999999999999999999999999999999999999999999999999999975443
No 9
>1whk_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1
Probab=99.95 E-value=1.5e-28 Score=182.02 Aligned_cols=74 Identities=38% Similarity=0.777 Sum_probs=69.4
Q ss_pred CCcccccceEEEeCCCceEEEEEEeecCCCCceEEEEEEcCCCCCCCcEECCEEeeeeCCCCeeeEecCccccc
Q psy3317 80 PEWVCIGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQD 153 (173)
Q Consensus 80 ~~~l~VGdRV~V~~~~~~GtVRYIG~l~~~~GiwvGVELDep~GknDGtv~G~rYF~C~p~~GiFVk~~kV~~d 153 (173)
++.|+||+||.|.....+|||||+|++++.+|+|+|||||+|.|||||+++|+|||+|+|+||+||++++|.+.
T Consensus 10 ~~~~~vG~rV~V~~~~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~~~~G~Fvr~~~v~~~ 83 (91)
T 1whk_A 10 TVKLHEGSQVLLTSSNEMATVRYVGPTDFASGIWLGLELRSAKGKNDGAVGDKRYFTCKPNYGVLVRPSRVTYR 83 (91)
T ss_dssp CCCCCSSCEEEESSSCCEEEECCCEECSSSSSEEEEEECSSSCSSCCSEETTEECCCCSTTCCCEECGGGEECC
T ss_pred CccccCCCEEEECCCCeEEEEEEeeeCCCCCCeEEEEEeCCCCCcCCCEECCEEEeecCCCeEEEEchHHcEEc
Confidence 44699999999975468999999999999999999999999999999999999999999999999999999874
No 10
>1whh_A Clipr-59; microtubule binding, trans-golgi network, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: b.34.10.1
Probab=99.95 E-value=5.7e-28 Score=182.31 Aligned_cols=77 Identities=40% Similarity=0.833 Sum_probs=71.4
Q ss_pred CcccccceEEEeCCCceEEEEEEeecCCCCceEEEEEEcCCCCCCCcEECCEEeeeeCCCCeeeEecCcccccCCCcc
Q psy3317 81 EWVCIGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDRRGRA 158 (173)
Q Consensus 81 ~~l~VGdRV~V~~~~~~GtVRYIG~l~~~~GiwvGVELDep~GknDGtv~G~rYF~C~p~~GiFVk~~kV~~d~~~~a 158 (173)
..++||+||.|. ....|||||+|++++.+|+|+|||||+|.|||||+++|+|||+|+|+||+||++++|....+|.+
T Consensus 24 ~~~~VG~RV~V~-g~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~GiFvr~~~v~~~~d~p~ 100 (102)
T 1whh_A 24 AKAEVGDQVLVA-GQKQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGSVFGVRYFTCAPRHGVFAPASRIQRIGSGPS 100 (102)
T ss_dssp CSSCTTSEEEET-TTEEEEEEEEEECSSSSSEEEEEECSSSCCSSSSEETTEECSCCCTTTEEEECGGGEEECCSCTT
T ss_pred ccCcCCCEEEEC-CCcEEEEEEeeecCCCCCeEEEEEeCCCCCcCCCEECCEEeeecCCCcEEEecHHHeEECCCCCC
Confidence 368999999996 35789999999999999999999999999999999999999999999999999999998777654
No 11
>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.95 E-value=3.4e-28 Score=180.65 Aligned_cols=77 Identities=31% Similarity=0.479 Sum_probs=70.1
Q ss_pred CcccccceEEEeC-C---CceEEEEEEeecC---CCCceEEEEEEcCC---CCCCCcEECCEEeeeeCCCCeeeEecCcc
Q psy3317 81 EWVCIGESVLIRP-Y---NSSGVIAYIGPTE---FAAGTWVGVELDAP---TGKNDGTVQGTRYFESRPKHGIFVRADKL 150 (173)
Q Consensus 81 ~~l~VGdRV~V~~-~---~~~GtVRYIG~l~---~~~GiwvGVELDep---~GknDGtv~G~rYF~C~p~~GiFVk~~kV 150 (173)
+.|+||+||.|.. . .++|||||+|+++ +.+|+|+|||||+| .|||||+++|+|||+|+|+||+||++++|
T Consensus 6 ~~~~VG~rV~V~~~~~~~~~~GtVryvG~v~~~~~~~G~wvGVElDep~~~~GKnDGsv~G~rYF~C~~~~G~Fv~~~~v 85 (95)
T 1whl_A 6 SGIDVGCPVKVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQGKQLFQCDEDCGVFVALDKL 85 (95)
T ss_dssp CCCCSSCEEEEECSSSSCEEEEEEEEECCCCSSSSCCCCCEEEEECSSSCSCCSSTTEETTEECCCCCTTTEEEECGGGE
T ss_pred ccCcCCCEEEEecCCCccceeEEEEEeCccCcccCCCceEEEEEeCCCcccCCCCCCEECCEEEeecCCCeEEEEcHHHe
Confidence 4689999999963 2 4799999999998 78999999999999 89999999999999999999999999999
Q ss_pred cccCCCc
Q psy3317 151 IQDRRGR 157 (173)
Q Consensus 151 ~~d~~~~ 157 (173)
.+..+..
T Consensus 86 ~~~~~~p 92 (95)
T 1whl_A 86 ELIESGP 92 (95)
T ss_dssp EECCSCS
T ss_pred EEcCcCC
Confidence 9877643
No 12
>2e3h_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 1.45A {Homo sapiens} SCOP: b.34.10.1 PDB: 2e4h_A
Probab=99.95 E-value=5.3e-28 Score=178.66 Aligned_cols=75 Identities=45% Similarity=0.855 Sum_probs=69.5
Q ss_pred ccccceEEEeCCCceEEEEEEeecCCCCceEEEEEEcCCCCCCCcEECCEEeeeeCCCCeeeEecCcccccCCCccc
Q psy3317 83 VCIGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDRRGRAM 159 (173)
Q Consensus 83 l~VGdRV~V~~~~~~GtVRYIG~l~~~~GiwvGVELDep~GknDGtv~G~rYF~C~p~~GiFVk~~kV~~d~~~~a~ 159 (173)
|+||+||.|.. ...|||||+|++++.+|+|+|||||+|.|||||+++|+|||+|+|+||+||++++|... +|.+.
T Consensus 2 l~vG~rV~V~g-~~~GtVryvG~~~~~~G~wvGVelDep~GKndGsv~G~rYF~C~p~~G~Fv~~~kv~~~-~~p~~ 76 (90)
T 2e3h_A 2 LKIGDRVLVGG-TKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKVTKI-GFPST 76 (90)
T ss_dssp CCTTCEEEETT-TEEEEEEEEEECSSSSSEEEEEEESSSCCSBSSEETTEESCCCCTTCEEEEEGGGEEET-TSCCC
T ss_pred CcCCCEEEECC-CCEEEEEEeccCCCCCCeEEEEEECCCCCCCCCEECCEEeeecCCCcEEEEcHHHeEEC-CCCCC
Confidence 78999999963 57899999999999999999999999999999999999999999999999999999985 55554
No 13
>2cp3_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.95 E-value=6.3e-28 Score=176.24 Aligned_cols=72 Identities=49% Similarity=0.921 Sum_probs=67.6
Q ss_pred CcccccceEEEeCCCceEEEEEEeecCCCCceEEEEEEcCCCCCCCcEECCEEeeeeCCCCeeeEecCccccc
Q psy3317 81 EWVCIGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQD 153 (173)
Q Consensus 81 ~~l~VGdRV~V~~~~~~GtVRYIG~l~~~~GiwvGVELDep~GknDGtv~G~rYF~C~p~~GiFVk~~kV~~d 153 (173)
..|+||+||.|. ....|||||+|++++.+|+|+|||||+|.|||||+++|+|||+|+|+||+||++++|..-
T Consensus 6 ~~~~vG~rv~v~-g~~~GtVryvG~~~~~~G~wvGVelDep~GkndGsv~G~rYF~c~~~~G~Fv~~~kv~~~ 77 (84)
T 2cp3_A 6 SGLRLGDRVLVG-GTKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCPPKFGLFAPIHKVIRI 77 (84)
T ss_dssp CSCCTTCEEEET-TTEEEEEEEEEECSSSSSEEEEEEESSSCCSBSSEETTEESSCCCTTTEEEEEGGGEEEC
T ss_pred cccccCCEEEEC-CCCeEEEEEeccCCCCCCeEEEEEeCCCCCcCCCEECCEEeeecCCCeEEEEcHHHeEEc
Confidence 368999999997 357899999999999999999999999999999999999999999999999999999863
No 14
>2cp6_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.95 E-value=3.8e-27 Score=191.77 Aligned_cols=73 Identities=47% Similarity=0.878 Sum_probs=68.7
Q ss_pred CCcccccceEEEeCCCceEEEEEEeecCCCCceEEEEEEcCCCCCCCcEECCEEeeeeCCCCeeeEecCccccc
Q psy3317 80 PEWVCIGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQD 153 (173)
Q Consensus 80 ~~~l~VGdRV~V~~~~~~GtVRYIG~l~~~~GiwvGVELDep~GknDGtv~G~rYF~C~p~~GiFVk~~kV~~d 153 (173)
+..|+||+||.|. ..++|||||||++++.+|+|+|||||+|.|||||+++|+|||+|+|+||+||++++|...
T Consensus 36 ~~~l~VG~RV~V~-g~~~GtVRyvG~v~~~~G~WvGVELDeP~GKnDGsv~G~rYF~C~p~~GiFVr~~kV~~~ 108 (172)
T 2cp6_A 36 ERELKIGDRVLVG-GTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKVTKI 108 (172)
T ss_dssp SSCCCSSCEEEET-TTEEEEEEEEEECSSSSSEEEEEEESSSCCSBSSEETTEECCCCCTTTEEEEEGGGCEEC
T ss_pred CccCccCCEEEEC-CCceEEEEEeCcCCCCCCcEEEEEecCCCCccCCEECCEEeeeeCCCeEEEechHHeEEC
Confidence 3479999999997 358999999999999999999999999999999999999999999999999999999874
No 15
>2z0w_A CAP-Gly domain-containing linker protein 4; alternative splicing, ANK repeat, protein binding, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.95 E-value=3.7e-28 Score=181.39 Aligned_cols=76 Identities=38% Similarity=0.744 Sum_probs=68.3
Q ss_pred CcccccceEEEeCCCceEEEEEEeecCCCCceEEEEEEcCCCCCCCcEECCEEeeeeCCCCeeeEecCcccccCCCc
Q psy3317 81 EWVCIGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDRRGR 157 (173)
Q Consensus 81 ~~l~VGdRV~V~~~~~~GtVRYIG~l~~~~GiwvGVELDep~GknDGtv~G~rYF~C~p~~GiFVk~~kV~~d~~~~ 157 (173)
..++||+||.|.. ..+|||||+|++++.+|+|+|||||+|.|||||+++|+|||+|+|+||+||++++|..-..+.
T Consensus 9 ~~~~vG~rV~V~g-~~~GtVryvG~~~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~G~Fv~~~~v~~~~~~~ 84 (96)
T 2z0w_A 9 GELRLGERVLVVG-QRLGTIRFFGTTNFAPGYWYGIELEKPHGKNDGSVGGVQYFSCSPRYGIFAPPSRVQRVTDSL 84 (96)
T ss_dssp --CCTTCCCCCCC-CCCEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEESSCCCTTSEEEECGGGCCCTTC--
T ss_pred ccCCCCCEEEECC-CcEEEEEEeccCCCCCCeEEEEEeCCCCCCCCCEECCEEeeecCCCeEEEEcHHHceeccchh
Confidence 3689999999973 578999999999999999999999999999999999999999999999999999999865543
No 16
>2coy_A Dynactin-1; microtubule binding, cytoskeleton associated protein, P150- glued, DAP-150, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.94 E-value=1.4e-27 Score=182.76 Aligned_cols=73 Identities=45% Similarity=0.760 Sum_probs=68.7
Q ss_pred CcccccceEEEeCCCceEEEEEEeecCCCCceEEEEEEcCCCCCCCcEECCEEeeeeCCCCeeeEecCccccc
Q psy3317 81 EWVCIGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQD 153 (173)
Q Consensus 81 ~~l~VGdRV~V~~~~~~GtVRYIG~l~~~~GiwvGVELDep~GknDGtv~G~rYF~C~p~~GiFVk~~kV~~d 153 (173)
..|+||+||.|...+.+|||||+|++++.+|+|+|||||+|.|||||+++|+|||+|+|+||+||++++|..-
T Consensus 32 ~~l~VG~RV~V~~~g~~GtVRyvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~GiFVr~~~v~~~ 104 (112)
T 2coy_A 32 RPLRVGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQSQIQVF 104 (112)
T ss_dssp CCCCTTCEEEETTTCCEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEECSCCCTTTEEEECGGGEEEC
T ss_pred ccCCCCCEEEECCCCeEEEEEEeeecCCCCCcEEEEEECCCCCCCCCEECCEEeeecCCCeEEEEchHHeEEc
Confidence 3699999999975568999999999999999999999999999999999999999999999999999999864
No 17
>2cp0_A Clipr-59 protein, clipr59; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.94 E-value=1.5e-27 Score=177.83 Aligned_cols=73 Identities=45% Similarity=0.864 Sum_probs=68.3
Q ss_pred cccccceEEEeCCCceEEEEEEeecCCCCceEEEEEEcCCCCCCCcEECCEEeeeeCCCCeeeEecCcccccCC
Q psy3317 82 WVCIGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDRR 155 (173)
Q Consensus 82 ~l~VGdRV~V~~~~~~GtVRYIG~l~~~~GiwvGVELDep~GknDGtv~G~rYF~C~p~~GiFVk~~kV~~d~~ 155 (173)
.|+||+||.|. ....|||||+|++++.+|+|+|||||+|.|||||+++|+|||+|+|+||+||++++|....+
T Consensus 16 ~~~vG~RV~V~-g~~~GtVryvG~v~~~~G~wvGVelDep~GKnDGsv~G~rYF~C~~~~G~Fv~~~kv~~~~~ 88 (95)
T 2cp0_A 16 GLRLGDRVLLD-GQKTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYFICPPKQGLFASVSKISKAVD 88 (95)
T ss_dssp TCCTTCEEEET-TTEEEEEEEEECCSSSCSCEEEEEESSSCCSBCSEETTEECCCCSSSCEEEECGGGEEECSC
T ss_pred CCCCCCEEEEC-CCCeEEEEEecccCCCCCcEEEEEecCCCCcCCCEECCEEeeecCCCcEEEEcHHHeecCCC
Confidence 58999999997 35789999999999999999999999999999999999999999999999999999987443
No 18
>1whj_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1
Probab=99.94 E-value=1.8e-27 Score=179.61 Aligned_cols=76 Identities=38% Similarity=0.740 Sum_probs=70.4
Q ss_pred cccccceEEEeCCCceEEEEEEeecCCCCceEEEEEEcCCCCCCCcEECCEEeeeeCCCCeeeEecCcccccCCCcc
Q psy3317 82 WVCIGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDRRGRA 158 (173)
Q Consensus 82 ~l~VGdRV~V~~~~~~GtVRYIG~l~~~~GiwvGVELDep~GknDGtv~G~rYF~C~p~~GiFVk~~kV~~d~~~~a 158 (173)
.|+||+||.|. ....|||||+|++++.+|+|+|||||+|.|||||+++|+|||+|+|+||+||++++|..-.++..
T Consensus 24 ~~~vG~RV~V~-g~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~G~Fv~~~kv~~~~~~~~ 99 (102)
T 1whj_A 24 GLKLGDRVVIA-GQKVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGRVQYFKCAPKYGIFAPLSKISKLKDSGP 99 (102)
T ss_dssp TCCTTCEEEET-TTEEEEEEEEEECSSSCSEEEEEEESSSCCSBSSEETTEECCCCCTTTEEEEEGGGEEESSSCCC
T ss_pred cCcCCCEEEEC-CCCEEEEEEeeecCCCCCeEEEEEeCCCCCccCCEECCEEecccCCCeEEEEeHHHccccCCCCC
Confidence 69999999996 35789999999999999999999999999999999999999999999999999999998666543
No 19
>2cp5_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.94 E-value=5.1e-27 Score=185.94 Aligned_cols=76 Identities=43% Similarity=0.850 Sum_probs=70.0
Q ss_pred CCCcccccceEEEeCCCceEEEEEEeecCCCCceEEEEEEcCCCCCCCcEECCEEeeeeCCCCeeeEecCcccccCC
Q psy3317 79 LPEWVCIGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDRR 155 (173)
Q Consensus 79 l~~~l~VGdRV~V~~~~~~GtVRYIG~l~~~~GiwvGVELDep~GknDGtv~G~rYF~C~p~~GiFVk~~kV~~d~~ 155 (173)
..+.|+||+||.|.. ..+|||||+|++++.+|+|+|||||+|.|||||+++|+|||+|+|+||+||++++|.....
T Consensus 61 ~~~~l~VG~RV~V~G-~~~GtVRyvG~v~~~~G~WvGVELDeP~GKnDGsv~G~rYF~C~p~~GiFVrp~kv~~~~~ 136 (141)
T 2cp5_A 61 FVDDFRVGERVWVNG-NKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKLTRKVS 136 (141)
T ss_dssp CCCCCCTTCEEEETT-SCEEEEEEEEECSSSSSEEEEEEESSSCCSCBSEETTEESSCCCTTTEEEECGGGEESSCC
T ss_pred hhhcCcCCCEEEECC-CcEEEEEEeeecCCCCCcEEEEEeCCCCCccCCEECCEEeeecCCCcEEEechHHeeeccC
Confidence 345699999999983 5799999999999999999999999999999999999999999999999999999987543
No 20
>1whg_A Tubulin specific chaperone B; microtubule binding, cytoskeleton associated protein, ckapi, structural genomics; NMR {Mus musculus} SCOP: b.34.10.1
Probab=99.94 E-value=2.7e-27 Score=181.24 Aligned_cols=74 Identities=39% Similarity=0.771 Sum_probs=68.7
Q ss_pred CCcccccceEEEeC-C--CceEEEEEEeecCCCCceEEEEEEcCCCCCCCcEECCEEeeeeCCCCeeeEecCccccc
Q psy3317 80 PEWVCIGESVLIRP-Y--NSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQD 153 (173)
Q Consensus 80 ~~~l~VGdRV~V~~-~--~~~GtVRYIG~l~~~~GiwvGVELDep~GknDGtv~G~rYF~C~p~~GiFVk~~kV~~d 153 (173)
++.|.||+||.|.. . ..+|||||||++++.+|+|+|||||+|.|||||+++|+|||+|+|+||+||++++|.+.
T Consensus 30 ~~~~~VG~RV~V~~~g~~~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~GiFvr~~~v~~g 106 (113)
T 1whg_A 30 ASAISVGSRCEVRAPDHSLRRGTVMYVGLTDFKPGYWVGVRYDEPLGKNDGSVNGKRYFECQAKYGAFVKPSAVTVG 106 (113)
T ss_dssp HTTSCSSCEEEECCSSSSCEEEEEEEEEECSSSSSEEEEEEESSSCCSBBSEETTEECSCCCTTTEEEECGGGEEEE
T ss_pred hhcCCCCCEEEEecCCCcceEEEEEEecccCCCCCEEEEEEecCCCCccCCEECCEEEeeeCCCeEEEECHHHeEEC
Confidence 34699999999963 2 48999999999999999999999999999999999999999999999999999999874
No 21
>2coz_A CAP350, centrosome-associated protein 350; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.94 E-value=7.8e-27 Score=181.00 Aligned_cols=71 Identities=45% Similarity=0.810 Sum_probs=67.3
Q ss_pred CcccccceEEEeCCCceEEEEEEeecCCCCceEEEEEEcCCCCCCCcEECCEEeeeeCCCCeeeEecCcccc
Q psy3317 81 EWVCIGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQ 152 (173)
Q Consensus 81 ~~l~VGdRV~V~~~~~~GtVRYIG~l~~~~GiwvGVELDep~GknDGtv~G~rYF~C~p~~GiFVk~~kV~~ 152 (173)
..|+||+||.|.. ..+|||||||++++.+|+|+|||||+|.|||||+++|+|||+|+|+||+||++++|..
T Consensus 30 ~~l~VG~RV~V~g-~~~GtVRyvG~v~~~~G~WvGVELDeP~GKnDGsv~G~rYF~C~p~~GiFVr~~kv~~ 100 (122)
T 2coz_A 30 FDFHIGDRVLIGN-VQPGILRFKGETSFAKGFWAGVELDKPEGNNNGTYDGIAYFECKEKHGIFAPPQKISH 100 (122)
T ss_dssp SSCCTTEEEEETT-TEEEEEEEEEECSSSSSEEEEEEESSTTSSBCSEETTEECCCCCSSCEEEECGGGEEC
T ss_pred ccCcCCCEEEECC-CcEEEEEEecccCCCCCeEEEEEeCCCCCccCCEECCEEeeecCCCcEEEecHHHCcc
Confidence 3699999999973 5899999999999999999999999999999999999999999999999999999985
No 22
>1whm_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.92 E-value=1.7e-25 Score=166.35 Aligned_cols=73 Identities=22% Similarity=0.364 Sum_probs=66.5
Q ss_pred cccccceEEEeCCC--ceEEEEEEeecCCC--CceEEEEEEcCCCCCCCcEECCEEee-eeCCCCeeeEecCcccccC
Q psy3317 82 WVCIGESVLIRPYN--SSGVIAYIGPTEFA--AGTWVGVELDAPTGKNDGTVQGTRYF-ESRPKHGIFVRADKLIQDR 154 (173)
Q Consensus 82 ~l~VGdRV~V~~~~--~~GtVRYIG~l~~~--~GiwvGVELDep~GknDGtv~G~rYF-~C~p~~GiFVk~~kV~~d~ 154 (173)
.|+||+||+|.... ++|||||+|++++. .|+|+|||||+|.|||||+++|+||| .|+++||+||++.++.+..
T Consensus 9 ~i~VG~Rc~V~~~~~~rrGtVrfvG~~~~~~~~G~wVGVelDEP~GknDGsv~G~ryF~~c~~~~g~fV~~~d~~~e~ 86 (92)
T 1whm_A 9 PLEINSRVSLKVGETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLCSFACVESTILLHINDIIPES 86 (92)
T ss_dssp SSCTTCEEEEEETTEEEEEEEEEEECCTTCTTTCCEEEEEESSSCCCCCSEETTEESCSSCCTTTEEEEEGGGEEECC
T ss_pred CccccCeEEEcCCCceeeEEEEEEecCCCcCCCCeEEEEEcCCCCCCCCCeECCEEeccccCCCcceEcccccCcccc
Confidence 48999999998544 79999999999864 69999999999999999999999999 9999999999999996644
No 23
>3qyh_B CO-type nitrIle hydratase beta subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} SCOP: b.34.4.0 PDB: 3qxe_B 3qz5_B 3qyg_B 3qz9_B
Probab=39.83 E-value=14 Score=30.59 Aligned_cols=18 Identities=11% Similarity=0.193 Sum_probs=14.0
Q ss_pred ccCCCCcccccceEEEeC
Q psy3317 76 DVTLPEWVCIGESVLIRP 93 (173)
Q Consensus 76 ~~~l~~~l~VGdRV~V~~ 93 (173)
....+..|.|||+|.|..
T Consensus 124 ~~~~~~~F~vGd~Vrv~~ 141 (219)
T 3qyh_B 124 EEGARARFAVGDKVRVLN 141 (219)
T ss_dssp SCCSCCCCCTTCEEEECC
T ss_pred CCCCCCCCCCCCEEEECC
Confidence 345566799999999973
No 24
>2zzd_A Thiocyanate hydrolase subunit alpha; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_A 2dxb_A 2dd5_A* 2dxc_A*
Probab=37.98 E-value=12 Score=28.72 Aligned_cols=18 Identities=17% Similarity=0.219 Sum_probs=13.3
Q ss_pred ccCCCCcccccceEEEeC
Q psy3317 76 DVTLPEWVCIGESVLIRP 93 (173)
Q Consensus 76 ~~~l~~~l~VGdRV~V~~ 93 (173)
....+..|.|||+|.|..
T Consensus 30 ~~~~~prF~vGDrVrvr~ 47 (126)
T 2zzd_A 30 GMAGKSKFNVGDRVRIKD 47 (126)
T ss_dssp TTTCSCSSCTTCEEEECC
T ss_pred CCCCCCccCCCCEEEEcc
Confidence 334455699999999973
No 25
>3hht_B NitrIle hydratase beta subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: b.34.4.4 PDB: 2dpp_B 1v29_B
Probab=37.69 E-value=13 Score=30.96 Aligned_cols=18 Identities=11% Similarity=0.316 Sum_probs=13.8
Q ss_pred ccCCCCcccccceEEEeC
Q psy3317 76 DVTLPEWVCIGESVLIRP 93 (173)
Q Consensus 76 ~~~l~~~l~VGdRV~V~~ 93 (173)
....+..|.|||+|.|..
T Consensus 135 ~~~~~~~F~vGd~Vrv~~ 152 (229)
T 3hht_B 135 EISASPRFKVGERIKTKN 152 (229)
T ss_dssp CCSSCCSCCTTCEEEECC
T ss_pred CCCCCCCCCCCCEEEECC
Confidence 334566799999999973
No 26
>1ugp_B NitrIle hydratase beta subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: b.34.4.4 PDB: 1ire_B 1ugq_B 1ugr_B 1ugs_B
Probab=34.41 E-value=17 Score=30.12 Aligned_cols=18 Identities=22% Similarity=0.233 Sum_probs=13.8
Q ss_pred ccCCCCcccccceEEEeC
Q psy3317 76 DVTLPEWVCIGESVLIRP 93 (173)
Q Consensus 76 ~~~l~~~l~VGdRV~V~~ 93 (173)
....+..|.|||+|.|..
T Consensus 132 ~~~~~~~F~vGd~Vrv~~ 149 (226)
T 1ugp_B 132 EVDRPPKFKEGDVVRFST 149 (226)
T ss_dssp CCSSCCSCCTTCEEEECC
T ss_pred CCCCCCcCCCCCeEEEcc
Confidence 444456799999999974
No 27
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=33.43 E-value=50 Score=33.49 Aligned_cols=68 Identities=15% Similarity=0.228 Sum_probs=45.6
Q ss_pred cccccceEEEeC------CCceEEEEEEeecCCCCceEEEEEEcCCC-CCCCcEECCEEeeeeCCCCeeeEecCcccccC
Q psy3317 82 WVCIGESVLIRP------YNSSGVIAYIGPTEFAAGTWVGVELDAPT-GKNDGTVQGTRYFESRPKHGIFVRADKLIQDR 154 (173)
Q Consensus 82 ~l~VGdRV~V~~------~~~~GtVRYIG~l~~~~GiwvGVELDep~-GknDGtv~G~rYF~C~p~~GiFVk~~kV~~d~ 154 (173)
.+..||||..-. -..+|||-=|-. ......+.|-+|++. |.+ |++| .|.+.+|.=|+.+-|.=-+
T Consensus 1065 ~F~LGDRVv~VqdsG~VPl~~kGTVVGi~~--~~~~~~ldVvFD~~F~~G~--tlgg----rcs~~RG~~v~~s~lLNlT 1136 (1155)
T 3pie_A 1065 RFHLGDRVMYIQDSGKVPLHSKGTVVGYTS--IGKNVSIQVLFDNEIIAGN--NFGG----RLQTRRGLGLDSSFLLNLS 1136 (1155)
T ss_pred cccCCCeEEEecCCCCCccccceEEEEEec--CCCceEEEEEeccCccCCC--cccc----cccccccccccHHHeEEcC
Confidence 589999986542 256788864433 334678889999996 332 2333 4999999999887766434
Q ss_pred CCc
Q psy3317 155 RGR 157 (173)
Q Consensus 155 ~~~ 157 (173)
..|
T Consensus 1137 ~~Q 1139 (1155)
T 3pie_A 1137 DRQ 1139 (1155)
T ss_pred CCc
Confidence 333
No 28
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=28.90 E-value=99 Score=22.93 Aligned_cols=56 Identities=23% Similarity=0.277 Sum_probs=31.4
Q ss_pred cccccceEEEeC-CC---ceEEEEEEeecCCCCceEEEEEEcCCCCCCCcEECCEEeeeeCCCCeeeEecC
Q psy3317 82 WVCIGESVLIRP-YN---SSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRAD 148 (173)
Q Consensus 82 ~l~VGdRV~V~~-~~---~~GtVRYIG~l~~~~GiwvGVELDep~GknDGtv~G~rYF~C~p~~GiFVk~~ 148 (173)
.|++||+|.... .+ +.-++.|+..-+.....++=|+.+. | +-+..-|+|=+|+.-.
T Consensus 20 eL~~GD~Vla~d~~G~~~~s~V~~~~~r~~~~~~~f~~I~t~~----------g-~~L~lTp~H~i~v~~~ 79 (145)
T 1at0_A 20 ELSIGDRVLSMTANGQAVYSEVILFMDRNLEQMQNFVQLHTDG----------G-AVLTVTPAHLVSVWQP 79 (145)
T ss_dssp GCCTTCEEEEECTTSCEEEEEEEEEEEEEEEEEEEEEEEEETT----------S-CEEEECTTCEEEEEET
T ss_pred HcCCCCEEEEECCCCCEEEEEEEEEEeeCCCcceeEEEEEECC----------C-CEEEEeCCCEEEEecC
Confidence 479999999863 11 2233445433222235666666642 2 4456667776666543
No 29
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=27.90 E-value=1.8e+02 Score=23.59 Aligned_cols=71 Identities=28% Similarity=0.455 Sum_probs=47.6
Q ss_pred cccccceEEEeC----CCceEEEEEEeecCCC--CceEEEEEEcCCCCC-CCcEECCEEeeeeCCCCeeeEecCccccc
Q psy3317 82 WVCIGESVLIRP----YNSSGVIAYIGPTEFA--AGTWVGVELDAPTGK-NDGTVQGTRYFESRPKHGIFVRADKLIQD 153 (173)
Q Consensus 82 ~l~VGdRV~V~~----~~~~GtVRYIG~l~~~--~GiwvGVELDep~Gk-nDGtv~G~rYF~C~p~~GiFVk~~kV~~d 153 (173)
.+++|+.|.+.. ..+.|+|.++++.... ..+.+=++++++.+. --|.+--. .|......++.||.+-|..+
T Consensus 221 ~i~~G~~v~v~~~~~~~~~~g~v~~i~~~~d~~~~~~~v~~~~~~~~~~l~~G~~~~v-~i~~~~~~~l~vP~~Av~~~ 298 (359)
T 3lnn_A 221 HVYVGQSATVKFDAYDDPQPGKVRYVGQILDADTRTTKVRMVFDNPDGRLRPGMFAQA-TFLSQPHEGIVVPMSAIVQS 298 (359)
T ss_dssp TCCTTCEEEEBCSSCSSCEEEEEEECCCCCCTTSCCEEEEEEEECSSCCCCTTCEEEE-EEECCCEEEEEEEGGGCEET
T ss_pred hCCCCCeEEEEEcCCCCcEEEEEEEEecccCCCCcEEEEEEEecCCCCCcCCCCEEEE-EEecCCCCceEeCHHHhecc
Confidence 588999999973 3578999999987542 234566777776543 45554333 33445667788888777654
No 30
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=23.16 E-value=51 Score=27.06 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=19.9
Q ss_pred cccccceEEEeCCCceEEEEEEeec
Q psy3317 82 WVCIGESVLIRPYNSSGVIAYIGPT 106 (173)
Q Consensus 82 ~l~VGdRV~V~~~~~~GtVRYIG~l 106 (173)
.+++||+|.+. +..|+|.-+|-.
T Consensus 128 pf~vGD~I~i~--~~~G~V~~I~l~ 150 (285)
T 3udc_A 128 QFSVGDYVTIN--GISGTVEEIGLR 150 (285)
T ss_dssp SCCTTCEEEET--TEEEEEEEECSS
T ss_pred CccCCCEEEEC--CEEEEEEEeeee
Confidence 48999999996 688999998766
No 31
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=20.84 E-value=55 Score=26.93 Aligned_cols=23 Identities=17% Similarity=0.089 Sum_probs=19.9
Q ss_pred cccccceEEEeCCCceEEEEEEeec
Q psy3317 82 WVCIGESVLIRPYNSSGVIAYIGPT 106 (173)
Q Consensus 82 ~l~VGdRV~V~~~~~~GtVRYIG~l 106 (173)
.+++||+|.+. +..|+|.-+|-.
T Consensus 129 pf~vGD~I~i~--g~~G~V~~I~l~ 151 (286)
T 2vv5_A 129 PFRAGEYVDLG--GVAGTVLSVQIF 151 (286)
T ss_dssp SSCTTCEEESS--SCEEEEEEECSS
T ss_pred CccCCCEEEEC--CEEEEEEEEEeE
Confidence 58999999996 688999988766
No 32
>4fm4_B NitrIle hydratase beta subunit; iron type hydratase, hydrolysis, sulfinic acid, lyase; 2.38A {Comamonas testosteroni}
Probab=20.28 E-value=59 Score=26.42 Aligned_cols=41 Identities=12% Similarity=0.154 Sum_probs=25.4
Q ss_pred CcccccceEEEeC-------------CCceEEEE-EEeecCC----------CCceEEEEEEcCC
Q psy3317 81 EWVCIGESVLIRP-------------YNSSGVIA-YIGPTEF----------AAGTWVGVELDAP 121 (173)
Q Consensus 81 ~~l~VGdRV~V~~-------------~~~~GtVR-YIG~l~~----------~~GiwvGVELDep 121 (173)
..+.|||+|.+.. .+..|+|. +.|...+ .+...+-|+++..
T Consensus 117 ~~F~vGd~Vrv~~~~~~gHtRlP~Y~rg~~G~I~~~~g~~v~Pd~~A~g~ge~p~~lY~V~F~~~ 181 (206)
T 4fm4_B 117 GGFKLGQRVHVKNEFVPGHTRFPAYIRGKAGVVVGISPAYPYPDAAAHGEYGFSEPTYDVCFKSK 181 (206)
T ss_dssp TCCCTTCEEEECCCCCSSCCSSCGGGTTCEEEEEEECCCEECHHHHTTTCCSCEECEEEEEEEHH
T ss_pred CCCcCCCEEEeCCCCCCCcccccHhhcCCeeEEEEEecCcCCcccccCCCCCCcceeEEEEEecc
Confidence 3699999999973 25677765 3333211 2345677777654
Done!