RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3317
(173 letters)
>3rdv_A CAP-Gly domain-containing linker protein 1; cytoskeletal protein,
CAP Gly protein complex, structural PR; HET: BME; 1.75A
{Homo sapiens} PDB: 2qk0_A
Length = 72
Score = 111 bits (281), Expect = 3e-33
Identities = 33/70 (47%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 81 EWVCIGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPK 140
+ +GE V + N G I ++G T+FA G W G+ LD P GKNDG+V G RYF+ P
Sbjct: 1 DDFRVGERVWVNG-NKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPL 59
Query: 141 HGIFVRADKL 150
GIF R KL
Sbjct: 60 KGIFTRPSKL 69
>1whk_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Mus musculus} SCOP: b.34.10.1
Length = 91
Score = 110 bits (278), Expect = 1e-32
Identities = 28/72 (38%), Positives = 42/72 (58%)
Query: 80 PEWVCIGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRP 139
+ G VL+ N + Y+GPT+FA+G W+G+EL + GKNDG V RYF +P
Sbjct: 10 TVKLHEGSQVLLTSSNEMATVRYVGPTDFASGIWLGLELRSAKGKNDGAVGDKRYFTCKP 69
Query: 140 KHGIFVRADKLI 151
+G+ VR ++
Sbjct: 70 NYGVLVRPSRVT 81
>2e3i_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural
protein; 2.00A {Homo sapiens} SCOP: b.34.10.1
Length = 86
Score = 109 bits (275), Expect = 3e-32
Identities = 33/70 (47%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 81 EWVCIGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPK 140
+ +GE V + N G I ++G T+FA G W G+ LD P GKNDG+V G RYF+ P
Sbjct: 1 DDFRVGERVWVNG-NKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPL 59
Query: 141 HGIFVRADKL 150
GIF R KL
Sbjct: 60 KGIFTRPSKL 69
>1txq_A Dynactin 1; protein complex, structural protein/protein binding
complex; 1.80A {Homo sapiens} SCOP: b.34.10.1 PDB:
2hqh_A 2hkq_B 2hkn_A 2pzo_A 3e2u_A 2hl5_C 2hl3_A 3tq7_P
Length = 93
Score = 109 bits (274), Expect = 5e-32
Identities = 33/71 (46%), Positives = 41/71 (57%)
Query: 80 PEWVCIGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRP 139
+ +G V + G +AY+G T FA G WVGV LD GKNDGTVQG +YF
Sbjct: 10 ARPLRVGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDE 69
Query: 140 KHGIFVRADKL 150
HGIFVR ++
Sbjct: 70 GHGIFVRQSQI 80
>1lpl_A Hypothetical 25.4 kDa protein F53F4.3 in chromosome V; structural
genomics, CAP-Gly domain, cytoskeleton, tubulin, PSI;
1.77A {Caenorhabditis elegans} SCOP: b.34.10.1 PDB:
1tov_A
Length = 95
Score = 107 bits (270), Expect = 2e-31
Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 80 PEWVCIGESVLIRPYNSS---GVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFE 136
+ + +G + G +AY+G T+F G WVGV+ D P GKNDG+V G RYF+
Sbjct: 9 AKNIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDGSVAGVRYFD 68
Query: 137 SRPKHGIFVRADKL 150
PK+G FVR +
Sbjct: 69 CDPKYGGFVRPVDV 82
>2coy_A Dynactin-1; microtubule binding, cytoskeleton associated protein,
P150- glued, DAP-150, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.34.10.1
Length = 112
Score = 108 bits (271), Expect = 3e-31
Identities = 38/97 (39%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Query: 54 SSTRRSSQSRASYPMSGDQSFDDVTLPEWVCIGESVLIRPYNSSGVIAYIGPTEFAAGTW 113
S +S + S SG + + + + +G V + G +AY+G T FA G W
Sbjct: 6 SGMAQSKRHVYSRTPSGSRMSAEAS-ARPLRVGSRVEVIGKGHRGTVAYVGATLFATGKW 64
Query: 114 VGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKL 150
VGV LD GKNDGTVQG +YF HGIFVR ++
Sbjct: 65 VGVILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQSQI 101
>2cp3_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated
protein, CYLN2, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.34.10.1
Length = 84
Score = 106 bits (268), Expect = 4e-31
Identities = 35/73 (47%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 80 PEWVCIGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRP 139
+ +G+ VL+ + GV+ Y+G T+FA G W GVELD P GKNDG V GTRYF+ P
Sbjct: 5 SSGLRLGDRVLVGGTKT-GVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCPP 63
Query: 140 KHGIFVRADKLIQ 152
K G+F K+I+
Sbjct: 64 KFGLFAPIHKVIR 76
>2cow_A Kinesin-like protein KIF13B; microtubule binding, cytoskeleton
associated protein, KIAA0639, kinesin-like protein
gakin, structural genomics; NMR {Homo sapiens} SCOP:
b.34.10.1
Length = 100
Score = 106 bits (266), Expect = 9e-31
Identities = 40/96 (41%), Positives = 59/96 (61%), Gaps = 7/96 (7%)
Query: 55 STRRSSQSRASYPMSGDQSFDDVTLPEWVCIGESVLIRPYNSSGVIAYIGPTEFAAGTWV 114
S+ S Q+ AS D+ +PEW+ GE V + + +GV+ Y+GP +F GTWV
Sbjct: 2 SSGSSGQALASDSEEADE------VPEWLREGEFVTVGA-HKTGVVRYVGPADFQEGTWV 54
Query: 115 GVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKL 150
GVELD P+GKNDG++ G +YF P +G+ VR ++
Sbjct: 55 GVELDLPSGKNDGSIGGKQYFRCNPGYGLLVRPSRV 90
>2e3h_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural
protein; 1.45A {Homo sapiens} SCOP: b.34.10.1 PDB:
2e4h_A
Length = 90
Score = 105 bits (265), Expect = 1e-30
Identities = 37/87 (42%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 85 IGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 144
IG+ VL+ +GV+ ++G T+FA G W GVELD P GKNDG V GTRYF+ +PK+G+F
Sbjct: 4 IGDRVLV-GGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLF 62
Query: 145 VRADKLIQ-DRRGRAMRSGGTGAMRRS 170
K+ + A+RR
Sbjct: 63 APVHKVTKIGFPSTTPAKAKANAVRRV 89
>1whj_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Mus musculus} SCOP: b.34.10.1
Length = 102
Score = 105 bits (265), Expect = 2e-30
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 60 SQSRASYPMSGDQSFDDVTLPEWVCIGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELD 119
S + P S + + + +G+ V+I G + + G TEFA+G W G+ELD
Sbjct: 2 SSGSSGLPNSDHTTSRAMLTSLGLKLGDRVVIAGQKV-GTLRFCGTTEFASGQWAGIELD 60
Query: 120 APTGKNDGTVQGTRYFESRPKHGIFVRADKLI 151
P GKN+G+V +YF+ PK+GIF K+
Sbjct: 61 EPEGKNNGSVGRVQYFKCAPKYGIFAPLSKIS 92
>2cp2_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated
protein, CYLN2, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.34.10.1 PDB: 2cp7_A
Length = 95
Score = 105 bits (263), Expect = 3e-30
Identities = 38/92 (41%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 60 SQSRASYPMSGDQSFDDVTLPEWVCIGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELD 119
S + GD D +GE V + GV+ Y+G T+FA G W GV LD
Sbjct: 2 SSGSSGAAEVGDDFLGDFV------VGERVWVNGVKP-GVVQYLGETQFAPGQWAGVVLD 54
Query: 120 APTGKNDGTVQGTRYFESRPKHGIFVRADKLI 151
P GKNDG V G RYFE GIF R KL
Sbjct: 55 DPVGKNDGAVGGVRYFECPALQGIFTRPSKLT 86
>2z0w_A CAP-Gly domain-containing linker protein 4; alternative splicing,
ANK repeat, protein binding, structural genomics,
NPPSFA; 2.50A {Homo sapiens}
Length = 96
Score = 104 bits (261), Expect = 6e-30
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 80 PEWVCIGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRP 139
+ +GE VL+ G I + G T FA G W G+EL+ P GKNDG+V G +YF P
Sbjct: 8 EGELRLGERVLV-VGQRLGTIRFFGTTNFAPGYWYGIELEKPHGKNDGSVGGVQYFSCSP 66
Query: 140 KHGIFVRADKL 150
++GIF ++
Sbjct: 67 RYGIFAPPSRV 77
>2cp0_A Clipr-59 protein, clipr59; microtubule binding, cytoskeleton
associated protein, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.34.10.1
Length = 95
Score = 103 bits (258), Expect = 1e-29
Identities = 39/104 (37%), Positives = 50/104 (48%), Gaps = 10/104 (9%)
Query: 59 SSQSRASYPMSGDQSFDDVTLPEWVCIGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVEL 118
SS S M +G+ VL+ + G + + G TEFA+G WVGVEL
Sbjct: 2 SSGSSGGNLMLSALGLR---------LGDRVLLDGQKT-GTLRFCGTTEFASGQWVGVEL 51
Query: 119 DAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDRRGRAMRSG 162
D P GKNDG+V G RYF PK G+F K+ + SG
Sbjct: 52 DEPEGKNDGSVGGVRYFICPPKQGLFASVSKISKAVDASGPSSG 95
>1whh_A Clipr-59; microtubule binding, trans-golgi network, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, structural protein; NMR {Mus musculus}
SCOP: b.34.10.1
Length = 102
Score = 103 bits (258), Expect = 2e-29
Identities = 35/92 (38%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 59 SSQSRASYPMSGDQSFDDVTLPEWVCIGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVEL 118
SS S P S +G+ VL+ G++ + G T+FA G W G+EL
Sbjct: 2 SSGSSGKSPSSPSLGSLQQREGAKAEVGDQVLV-AGQKQGIVRFYGKTDFAPGYWYGIEL 60
Query: 119 DAPTGKNDGTVQGTRYFESRPKHGIFVRADKL 150
D PTGK+DG+V G RYF P+HG+F A ++
Sbjct: 61 DQPTGKHDGSVFGVRYFTCAPRHGVFAPASRI 92
>2cp5_A Restin; microtubule binding, cytoskeleton associated protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.34.10.1
Length = 141
Score = 102 bits (255), Expect = 2e-28
Identities = 43/139 (30%), Positives = 67/139 (48%), Gaps = 9/139 (6%)
Query: 12 SSDMASSSLTVSSEMDSCSDLDKRSSSSSLSSHDENKVVRRKSSTRRSSQSRASYPMSGD 71
SS + S+ S + + + + K S++ + V + S+ ++S + +S
Sbjct: 2 SSGSSGMSMLKPSGLKAPTKILKPGSTALKTPTAVVAPVEKTISSEKASSTPSSETQEEF 61
Query: 72 QSFDDVTLPEWVCIGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQG 131
+ +GE V + N G I ++G T+FA G W G+ LD P GKNDG+V G
Sbjct: 62 --------VDDFRVGERVWVNG-NKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAG 112
Query: 132 TRYFESRPKHGIFVRADKL 150
RYF+ P GIF R KL
Sbjct: 113 VRYFQCEPLKGIFTRPSKL 131
>1whg_A Tubulin specific chaperone B; microtubule binding, cytoskeleton
associated protein, ckapi, structural genomics; NMR {Mus
musculus} SCOP: b.34.10.1
Length = 113
Score = 100 bits (250), Expect = 4e-28
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Query: 54 SSTRRSSQSRASYPMSGDQSFDDVTLPEWVCIGESVLIRPYNSS---GVIAYIGPTEFAA 110
SS +++ + + ++ + +G +R + S G + Y+G T+F
Sbjct: 5 SSGNEELRAQQE-AEAAQRLSEEKAQASAISVGSRCEVRAPDHSLRRGTVMYVGLTDFKP 63
Query: 111 GTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLI 151
G WVGV D P GKNDG+V G RYFE + K+G FV+ +
Sbjct: 64 GYWVGVRYDEPLGKNDGSVNGKRYFECQAKYGAFVKPSAVT 104
>1ixd_A Cylindromatosis tumour-suppressor CYLD; structural genomics, riken
structural genomics/proteomics initiative, RSGI,
antitumor protein; NMR {Homo sapiens} SCOP: b.34.10.1
Length = 104
Score = 99.5 bits (248), Expect = 6e-28
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Query: 80 PEWVCIGESVLIRPYNSS-GVIAYIGPTEFAAGTWVGVELDAPT-GKNDGTVQGTRYFES 137
+ +G ++ GVI +IG G+EL+ G DGT +GTRYF
Sbjct: 15 SHGLEVGSLAEVKENPPFYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTC 74
Query: 138 RPKHGIFVRADKLIQDRRGRAM 159
K +FV+ D R ++
Sbjct: 75 ALKKALFVKLKSCRPDSRFASL 96
>2coz_A CAP350, centrosome-associated protein 350; microtubule binding,
cytoskeleton associated protein, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Length = 122
Score = 99 bits (249), Expect = 7e-28
Identities = 34/97 (35%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
Query: 54 SSTRRSSQSRASYPMSGDQSFDDVTLPEWVCIGESVLIRPYNSSGVIAYIGPTEFAAGTW 113
S + + S IG+ VLI G++ + G T FA G W
Sbjct: 3 SGSSGVEHEQQVTESPSLASVPTADELFDFHIGDRVLI-GNVQPGILRFKGETSFAKGFW 61
Query: 114 VGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKL 150
GVELD P G N+GT G YFE + KHGIF K+
Sbjct: 62 AGVELDKPEGNNNGTYDGIAYFECKEKHGIFAPPQKI 98
>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.34.10.1
Length = 95
Score = 89.1 bits (221), Expect = 5e-24
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Query: 85 IGESVLIRPYNSS----GVIAYIGP---TEFAAGTWVGVEL---DAPTGKNDGTVQGTRY 134
+G V ++ + GV+ + GP +G + GVEL G DG QG +
Sbjct: 10 VGCPVKVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQGKQL 69
Query: 135 FESRPKHGIFVRADKL 150
F+ G+FV DKL
Sbjct: 70 FQCDEDCGVFVALDKL 85
>2cp6_A Restin; microtubule binding, cytoskeleton associated protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.34.10.1
Length = 172
Score = 85.5 bits (211), Expect = 1e-21
Identities = 43/137 (31%), Positives = 64/137 (46%), Gaps = 10/137 (7%)
Query: 37 SSSSLSSHDENKVVRRKSSTRRSSQSRASYPMSGDQSFDDVTLPEWVCIGESVLIRPYNS 96
SS S + + + +S S+ S A G++ IG+ VL+
Sbjct: 2 SSGSSGATPPISNLTKTASESISNLSEAGSIKKGERELK---------IGDRVLV-GGTK 51
Query: 97 SGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDRRG 156
+GV+ ++G T+FA G W GVELD P GKNDG V GTRYF+ +PK+G+F K+ +
Sbjct: 52 AGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKVTKIGFP 111
Query: 157 RAMRSGGTGAMRRSTSR 173
+ R
Sbjct: 112 STTPAKAKANAVRRVMA 128
>1whm_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.34.10.1
Length = 92
Score = 56.7 bits (136), Expect = 2e-11
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 88 SVLIRPYNSSGVIAYIG--PTEFAAGTWVGVELDAPTGKNDGTVQGTRYFE-SRPKHGIF 144
S+ + SG + + P + + G +VGV++D P G DG G + + + I
Sbjct: 17 SLKVGETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLCSFACVESTIL 76
Query: 145 VRADKLIQDRRG 156
+ + +I + G
Sbjct: 77 LHINDIIPESSG 88
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.7 bits (87), Expect = 0.001
Identities = 28/172 (16%), Positives = 47/172 (27%), Gaps = 68/172 (39%)
Query: 3 SSMSSSLTISSDMASSSLTVSSEMDSCSDL---------DKRSSSSSLSSH--------D 45
+ S +I D ++ V S M S S+L +K +S
Sbjct: 315 PNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA 374
Query: 46 ENKVV--------------RRKSSTRRSSQSRASYPMS-----GDQSFDDVTLPEWVCIG 86
+N VV R+ + QSR P S F LP +
Sbjct: 375 KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI--PFSERKLKFSNRF----LP----VA 424
Query: 87 ESVLIRPYNSSGVIAYIGPT------EFAAGT--WVGVELDAP-----TGKN 125
P++S + P + + ++ P G +
Sbjct: 425 S-----PFHSH----LLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD 467
>1rh1_A Colicin B; FEPA, cytotoxic bacterial protein, TONB, antibiotic;
2.50A {Escherichia coli} SCOP: b.110.1.1 f.1.1.1
Length = 511
Score = 30.5 bits (67), Expect = 0.29
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 105 PTEFAAGTWVGVELDAPTGKNDGTVQGT 132
+ G G+ P G D + QG
Sbjct: 30 GGDVKPGGSSGLAPSMPPGWGDYSPQGI 57
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.1 bits (64), Expect = 0.82
Identities = 20/163 (12%), Positives = 45/163 (27%), Gaps = 45/163 (27%)
Query: 21 TVSSEMDSC---SDLDKRSSSSSLSSHDENKVVRRKSSTRRSSQSR--ASYPMSGDQSFD 75
V ++ S ++K+ S++S ++ K + Y + D
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462
Query: 76 DVTLPE----WVCIGESVLIRPYNSSGVIAY----IGPTEFAAG--------TWV----- 114
D+ P + Y+ I + I E ++
Sbjct: 463 DLIPPYLDQYF-----------YSH---IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508
Query: 115 --GVELDAPTGKNDGTVQGTRYFES--RPKHGIFVRADKLIQD 153
+A + T+Q ++++ + R I D
Sbjct: 509 HDSTAWNASGSILN-TLQQLKFYKPYICDNDPKYERLVNAILD 550
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 1.1
Identities = 6/29 (20%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 2 KSS---MSSSLTISSDMASSSLTVSSEMD 27
K + + +SL + +D ++ +L + + M+
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATME 47
>1oao_A CODH, carbon monoxide dehydrogenase/acetyl-COA synthase beta;
oxidoreductase-transferase complex, electron transfer,
oxidoreductase; 1.90A {Moorella thermoacetica} SCOP:
e.26.1.2 PDB: 1mjg_A 2z8y_A 3i01_A 3i04_A
Length = 674
Score = 27.7 bits (61), Expect = 2.3
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 10/41 (24%)
Query: 77 VTLPEW-----VCIGESVLIRPYNSSGVIAYIGPTEFAAGT 112
+ PE IG + S GV ++G G+
Sbjct: 578 ASAPEAMSGKAAAIGTWWV-----SLGVPTHVGTMPPVEGS 613
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen,
hydro hydrolase inhibitor complex; HET: CIT; 2.14A
{Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A
2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Length = 173
Score = 26.6 bits (58), Expect = 3.8
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 33 DKRSSSSSLSSHDENKVVRRKSSTRRSSQSRASYPMSGD 71
D+ S SL S + V R T R Y M+ +
Sbjct: 4 DRSSFVPSLFSKKKKNVTMRSIKTTRDRVPTYQYNMNFE 42
>2cho_A Glucosaminidase, hexosaminiase; O-GLCNACASE, hydrolase,
N-acetylglucosamine; 1.85A {Bacteroides
thetaiotaomicron} SCOP: a.246.1.1 c.1.8.10 d.92.2.3 PDB:
2chn_A 2vvn_A* 2vvs_A* 2x0h_A* 2xm2_A* 2w4x_A* 2w66_A*
2w67_A* 2wca_A* 2xj7_A* 2xm1_A* 2j47_A* 2jiw_A* 2wzh_A*
2wzi_A* 2j4g_A*
Length = 716
Score = 26.8 bits (58), Expect = 4.7
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 95 NSSGVIAYIGPTEFAAGTWVGVELDAPT 122
N + ++AAG V +ELDA
Sbjct: 612 NRVLISPANEVVKWAAGNSVEIELDAIY 639
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc,
PSI-biology, structural genomics; 1.91A {Legionella
pneumophila subsp}
Length = 297
Score = 26.6 bits (59), Expect = 5.2
Identities = 5/36 (13%), Positives = 12/36 (33%)
Query: 91 IRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKND 126
+ + + ++G AG +G + T
Sbjct: 96 PKDKTKNPYLVFLGSDNLLAGKKLGEKALELTPSAK 131
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding,
serine/threonine-protein kinase, CGD3_920, transferase;
HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB:
3dfa_A 3ma6_A*
Length = 287
Score = 26.4 bits (59), Expect = 5.6
Identities = 9/21 (42%), Positives = 11/21 (52%), Gaps = 6/21 (28%)
Query: 89 VLIRPYN------SSGVIAYI 103
VL Y+ S+GVI YI
Sbjct: 194 VLRGTYDEKCDVWSAGVILYI 214
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4
calmodulin like EF...; calcium dependent protein kinase;
HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II}
PDB: 2qg5_A*
Length = 277
Score = 25.6 bits (57), Expect = 8.7
Identities = 7/21 (33%), Positives = 10/21 (47%), Gaps = 6/21 (28%)
Query: 89 VLIRPYN------SSGVIAYI 103
VL Y S+GV+ Y+
Sbjct: 179 VLEGLYGPECDEWSAGVMMYV 199
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.124 0.345
Gapped
Lambda K H
0.267 0.0685 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,395,523
Number of extensions: 130471
Number of successful extensions: 337
Number of sequences better than 10.0: 1
Number of HSP's gapped: 335
Number of HSP's successfully gapped: 36
Length of query: 173
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 86
Effective length of database: 4,272,666
Effective search space: 367449276
Effective search space used: 367449276
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (24.7 bits)