RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3317
(173 letters)
>d2hqha1 b.34.10.1 (A:26-97) Dynactin 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 72
Score = 102 bits (257), Expect = 4e-30
Identities = 33/66 (50%), Positives = 40/66 (60%)
Query: 85 IGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 144
+G V + G +AY+G T FA G WVGV LD GKNDGTVQG +YF HGIF
Sbjct: 4 VGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIF 63
Query: 145 VRADKL 150
VR ++
Sbjct: 64 VRQSQI 69
>d2cowa1 b.34.10.1 (A:7-94) Kinesin-like protein kif13b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 102 bits (255), Expect = 1e-29
Identities = 38/90 (42%), Positives = 56/90 (62%), Gaps = 7/90 (7%)
Query: 61 QSRASYPMSGDQSFDDVTLPEWVCIGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDA 120
Q+ AS D+ +PEW+ GE V + + +GV+ Y+GP +F GTWVGVELD
Sbjct: 2 QALASDSEEADE------VPEWLREGEFVTV-GAHKTGVVRYVGPADFQEGTWVGVELDL 54
Query: 121 PTGKNDGTVQGTRYFESRPKHGIFVRADKL 150
P+GKNDG++ G +YF P +G+ VR ++
Sbjct: 55 PSGKNDGSIGGKQYFRCNPGYGLLVRPSRV 84
>d2e3ha1 b.34.10.1 (A:212-282) CLIP-115 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 71
Score = 99.8 bits (249), Expect = 6e-29
Identities = 34/68 (50%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 85 IGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 144
IG+ VL+ + GV+ ++G T+FA G W GVELD P GKNDG V GTRYF+ +PK+G+F
Sbjct: 3 IGDRVLVGGTKA-GVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLF 61
Query: 145 VRADKLIQ 152
K+ +
Sbjct: 62 APVHKVTK 69
>d2e3ia1 b.34.10.1 (A:58-128) Restin {Human (Homo sapiens) [TaxId:
9606]}
Length = 71
Score = 99.4 bits (248), Expect = 1e-28
Identities = 33/66 (50%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 85 IGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 144
+GE V + N G I ++G T+FA G W G+ LD P GKNDG+V G RYF+ P GIF
Sbjct: 3 VGERVWVNG-NKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIF 61
Query: 145 VRADKL 150
R KL
Sbjct: 62 TRPSKL 67
>d1whka_ b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 91
Score = 97.5 bits (243), Expect = 8e-28
Identities = 28/71 (39%), Positives = 42/71 (59%)
Query: 80 PEWVCIGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRP 139
+ G VL+ N + Y+GPT+FA+G W+G+EL + GKNDG V RYF +P
Sbjct: 10 TVKLHEGSQVLLTSSNEMATVRYVGPTDFASGIWLGLELRSAKGKNDGAVGDKRYFTCKP 69
Query: 140 KHGIFVRADKL 150
+G+ VR ++
Sbjct: 70 NYGVLVRPSRV 80
>d1tova_ b.34.10.1 (A:) Cytoskeleton-associated protein F53F4.3
{Caenorhabditis elegans [TaxId: 6239]}
Length = 98
Score = 97.2 bits (242), Expect = 2e-27
Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 80 PEWVCIGESVLIRPYNSS---GVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFE 136
+ + +G + G +AY+G T+F G WVGV+ D P GKNDG+V G RYF+
Sbjct: 12 AKNIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDGSVAGVRYFD 71
Query: 137 SRPKHGIFVRADKL 150
PK+G FVR +
Sbjct: 72 CDPKYGGFVRPVDV 85
>d2coza1 b.34.10.1 (A:8-116) Centrosome-associated protein 350
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 96.8 bits (241), Expect = 2e-27
Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 7/95 (7%)
Query: 56 TRRSSQSRASYPMSGDQSFDDVTLPEWVCIGESVLIRPYNSSGVIAYIGPTEFAAGTWVG 115
++ ++S + + D + + V IG G++ + G T FA G W G
Sbjct: 4 EQQVTESPSLASVPTADELFDFHIGDRVLIGN-------VQPGILRFKGETSFAKGFWAG 56
Query: 116 VELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKL 150
VELD P G N+GT G YFE + KHGIF K+
Sbjct: 57 VELDKPEGNNNGTYDGIAYFECKEKHGIFAPPQKI 91
>d2cp0a1 b.34.10.1 (A:7-89) CLIP170-related 59kda protein CLIPR-59
(1500005P14Rik) {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 94.8 bits (236), Expect = 7e-27
Identities = 33/66 (50%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 85 IGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 144
+G+ VL+ + G + + G TEFA+G WVGVELD P GKNDG+V G RYF PK G+F
Sbjct: 13 LGDRVLLDGQKT-GTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYFICPPKQGLF 71
Query: 145 VRADKL 150
K+
Sbjct: 72 ASVSKI 77
>d1whha_ b.34.10.1 (A:) CLIP170-related 59kda protein CLIPR-59
(1500005P14Rik) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 102
Score = 91.0 bits (226), Expect = 4e-25
Identities = 35/96 (36%), Positives = 54/96 (56%), Gaps = 5/96 (5%)
Query: 55 STRRSSQSRASYPMSGDQSFDDVTLPEWVCIGESVLIRPYNSSGVIAYIGPTEFAAGTWV 114
S+ S +S +S + Q + +G+ VL+ G++ + G T+FA G W
Sbjct: 2 SSGSSGKSPSSPSLGSLQQREGAKAE----VGDQVLVAGQKQ-GIVRFYGKTDFAPGYWY 56
Query: 115 GVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKL 150
G+ELD PTGK+DG+V G RYF P+HG+F A ++
Sbjct: 57 GIELDQPTGKHDGSVFGVRYFTCAPRHGVFAPASRI 92
>d1whja_ b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 102
Score = 88.7 bits (220), Expect = 3e-24
Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 65 SYPMSGDQSFDDVTLPEWVC-----IGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELD 119
S SG + D T + +G+ V+I G + + G TEFA+G W G+ELD
Sbjct: 2 SSGSSGLPNSDHTTSRAMLTSLGLKLGDRVVIAGQKV-GTLRFCGTTEFASGQWAGIELD 60
Query: 120 APTGKNDGTVQGTRYFESRPKHGIFVRADKLI 151
P GKN+G+V +YF+ PK+GIF K+
Sbjct: 61 EPEGKNNGSVGRVQYFKCAPKYGIFAPLSKIS 92
>d1ixda_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 85.7 bits (212), Expect = 6e-23
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 85 IGESVLIRPYNS-SGVIAYIGPTEFAAGTWVGVEL-DAPTGKNDGTVQGTRYFESRPKHG 142
+G ++ GVI +IG G+EL D G DGT +GTRYF K
Sbjct: 20 VGSLAEVKENPPFYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTCALKKA 79
Query: 143 IFVRADKLIQDRR 155
+FV+ D R
Sbjct: 80 LFVKLKSCRPDSR 92
>d1whga_ b.34.10.1 (A:) Tubulin-specific chaperone B (SKAP1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 113
Score = 84.9 bits (210), Expect = 1e-22
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 85 IGESVLIRPYNSS---GVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKH 141
+G +R + S G + Y+G T+F G WVGV D P GKNDG+V G RYFE + K+
Sbjct: 35 VGSRCEVRAPDHSLRRGTVMYVGLTDFKPGYWVGVRYDEPLGKNDGSVNGKRYFECQAKY 94
Query: 142 GIFVRADKL 150
G FV+ +
Sbjct: 95 GAFVKPSAV 103
>d1whma_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld
{Human (Homo sapiens) [TaxId: 9606]}
Length = 92
Score = 78.3 bits (193), Expect = 3e-20
Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Query: 83 VCIGESVLIRPYNSS--GVIAYIG--PTEFAAGTWVGVELDAPTGKNDGTVQGTRYFE-S 137
+ I V ++ + G + + P + + G +VGV++D P G DG G + +
Sbjct: 10 LEINSRVSLKVGETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLCSFA 69
Query: 138 RPKHGIFVRADKLIQDRRG 156
+ I + + +I + G
Sbjct: 70 CVESTILLHINDIIPESSG 88
>d1whla_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld
{Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 76.4 bits (188), Expect = 2e-19
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 93 PYNSSGVIAYIGPTEF---AAGTWVGVELD---APTGKNDGTVQGTRYFESRPKHGIFVR 146
GV+ + GP +G + GVEL G DG QG + F+ G+FV
Sbjct: 22 EEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQGKQLFQCDEDCGVFVA 81
Query: 147 ADKL 150
DKL
Sbjct: 82 LDKL 85
>d2cp6a1 b.34.10.1 (A:8-167) Restin {Human (Homo sapiens) [TaxId:
9606]}
Length = 160
Score = 72.0 bits (176), Expect = 4e-17
Identities = 34/67 (50%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 85 IGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 144
IG+ VL+ + GV+ ++G T+FA G W GVELD P GKNDG V GTRYF+ +PK+G+F
Sbjct: 34 IGDRVLVGGTKA-GVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLF 92
Query: 145 VRADKLI 151
K+
Sbjct: 93 APVHKVT 99
>d1hfxa_ d.2.1.2 (A:) alpha-Lactalbumin {Guinea pig (Cavia
porcellus) [TaxId: 10141]}
Length = 123
Score = 24.0 bits (52), Expect = 7.6
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 74 FDDVTLPEWVCIGE 87
+ D+TLPEW+CI
Sbjct: 18 YRDITLPEWLCIIF 31
>d1uypa1 b.29.1.19 (A:295-432) Beta-fructosidase (invertase),
C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Length = 138
Score = 24.2 bits (52), Expect = 8.2
Identities = 4/26 (15%), Positives = 11/26 (42%)
Query: 125 NDGTVQGTRYFESRPKHGIFVRADKL 150
ND R + + V+++++
Sbjct: 101 NDSIAFSFRIHPENVYNILSVKSNQV 126
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.311 0.124 0.345
Gapped
Lambda K H
0.267 0.0682 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 564,692
Number of extensions: 23325
Number of successful extensions: 58
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 21
Length of query: 173
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 94
Effective length of database: 1,322,926
Effective search space: 124355044
Effective search space used: 124355044
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.1 bits)