BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy3318
         (139 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2VHH|A Chain A, Crystal Structure Of A Pyrimidine Degrading Enzyme From
           Drosophila Melanogaster
 pdb|2VHH|B Chain B, Crystal Structure Of A Pyrimidine Degrading Enzyme From
           Drosophila Melanogaster
 pdb|2VHH|C Chain C, Crystal Structure Of A Pyrimidine Degrading Enzyme From
           Drosophila Melanogaster
 pdb|2VHH|D Chain D, Crystal Structure Of A Pyrimidine Degrading Enzyme From
           Drosophila Melanogaster
 pdb|2VHI|A Chain A, Crystal Structure Of A Pyrimidine Degrading Enzyme From
           Drosophila Melanogaster
 pdb|2VHI|B Chain B, Crystal Structure Of A Pyrimidine Degrading Enzyme From
           Drosophila Melanogaster
 pdb|2VHI|C Chain C, Crystal Structure Of A Pyrimidine Degrading Enzyme From
           Drosophila Melanogaster
 pdb|2VHI|D Chain D, Crystal Structure Of A Pyrimidine Degrading Enzyme From
           Drosophila Melanogaster
 pdb|2VHI|E Chain E, Crystal Structure Of A Pyrimidine Degrading Enzyme From
           Drosophila Melanogaster
 pdb|2VHI|F Chain F, Crystal Structure Of A Pyrimidine Degrading Enzyme From
           Drosophila Melanogaster
 pdb|2VHI|G Chain G, Crystal Structure Of A Pyrimidine Degrading Enzyme From
           Drosophila Melanogaster
 pdb|2VHI|H Chain H, Crystal Structure Of A Pyrimidine Degrading Enzyme From
           Drosophila Melanogaster
          Length = 405

 Score = 91.7 bits (226), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/127 (41%), Positives = 80/127 (62%), Gaps = 8/127 (6%)

Query: 1   MSADEPFESVETILQKYIPEDELKLVNAVLYG-EPLKKLYLPNS-----KSNEFNVVGYK 54
           MSA E  +++   L+K++P DELK V  +LYG E  + L LP S     + N F++ GY+
Sbjct: 1   MSAFE-LKNLNDCLEKHLPPDELKEVKRILYGVEEDQTLELPTSAKDIAEQNGFDIKGYR 59

Query: 55  FGAKPESSRPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCL 114
           F A+ E +R  R+VRVG IQN I   T +  + ++R A +++V+ +I AA E+G N++C 
Sbjct: 60  FTAREEQTRKRRIVRVGAIQNSIVIPTTA-PIEKQREAIWNKVKTMIKAAAEAGCNIVCT 118

Query: 115 QEAWRRP 121
           QEAW  P
Sbjct: 119 QEAWTMP 125


>pdb|2C9A|A Chain A, Crystal Structure Of The Mam-ig Module Of Receptor Protein
           Tyrosine Phosphatase Mu
          Length = 259

 Score = 31.6 bits (70), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 13/109 (11%)

Query: 4   DEPFESVETILQK----YIPEDELKLVNAVLYGEP---LKKLYLPNSKSNEFNVVGYKFG 56
           D  +E V T+ +     + P     LVNA   G P      L LP  K N+ + + + + 
Sbjct: 25  DFNWEQVNTLTKPTSDPWXPSGSFXLVNAS--GRPEGQRAHLLLPQLKENDTHCIDFHYF 82

Query: 57  AKPESSRPPRLVRVGIIQNH--IGNSTVSCNVPQERSATYDRVEKLINA 103
              +S+ PP L+ V +  N+  +GN     N+  + + T++R E  I+ 
Sbjct: 83  VSSKSNSPPGLLNVYVKVNNGPLGNPI--WNISGDPTRTWNRAELAIST 129


>pdb|2V5Y|A Chain A, Crystal Structure Of The Receptor Protein Tyrosine
           Phosphatase Mu Ectodomain
          Length = 731

 Score = 31.6 bits (70), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 13/109 (11%)

Query: 4   DEPFESVETILQK----YIPEDELKLVNAVLYGEP---LKKLYLPNSKSNEFNVVGYKFG 56
           D  +E V T+ +     ++P     LVNA   G P      L LP  K N+ + + + + 
Sbjct: 25  DFNWEQVNTLTKPTSDPWMPSGSFMLVNAS--GRPEGQRAHLLLPQLKENDTHCIDFHYF 82

Query: 57  AKPESSRPPRLVRVGIIQNH--IGNSTVSCNVPQERSATYDRVEKLINA 103
              +S+ PP L+ V +  N+  +GN     N+  + + T++R E  I+ 
Sbjct: 83  VSSKSNSPPGLLNVYVKVNNGPLGNPI--WNISGDPTRTWNRAELAIST 129


>pdb|1FLG|A Chain A, Crystal Structure Of The Quinoprotein Ethanol
           Dehydrogenase From Pseudomonas Aeruginosa
 pdb|1FLG|B Chain B, Crystal Structure Of The Quinoprotein Ethanol
           Dehydrogenase From Pseudomonas Aeruginosa
          Length = 582

 Score = 28.1 bits (61), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 22/89 (24%)

Query: 32  GEPLKKLYLPNSKSNEFNVVGYKFGAKPESS-----RPPRLVRVGIIQNHIG-----NST 81
           G+  K L +  S  +EF VVG  F   P++      RP        ++ H+G     +ST
Sbjct: 164 GKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRP-------FVEGHMGRLNGKDST 216

Query: 82  VSCNV-----PQERSATYDRVEKLINAAG 105
           V+ +V     P +R++   +VE   +  G
Sbjct: 217 VTGDVKAPSWPDDRNSPTGKVESWSHGGG 245


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.133    0.382 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,199,114
Number of Sequences: 62578
Number of extensions: 159324
Number of successful extensions: 220
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 212
Number of HSP's gapped (non-prelim): 7
length of query: 139
length of database: 14,973,337
effective HSP length: 89
effective length of query: 50
effective length of database: 9,403,895
effective search space: 470194750
effective search space used: 470194750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 46 (22.3 bits)