BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3318
(139 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q964D8|BUP1_DICDI Beta-ureidopropionase OS=Dictyostelium discoideum GN=pyd3 PE=1 SV=1
Length = 391
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 72/124 (58%), Gaps = 10/124 (8%)
Query: 7 FESVETILQKYIPEDELKLVNAVLYGE---------PLKKLYLPNSKSNEFNVVGYKFGA 57
FESV+ L+KYIP +EL V +LYG P+ + L + N F +V K A
Sbjct: 5 FESVQATLEKYIPAEELSEVKRILYGYNRGHHVKSLPICQEALDLANKNNFEIVASKVEA 64
Query: 58 KPESSRPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEA 117
PE R PR+VR+GIIQN IG T + + + A ++EK+I+AAG GVNVLCLQE
Sbjct: 65 DPEQLRKPRIVRLGIIQNSIGAETTA-PIQDQYLAIEAKIEKMIDAAGAMGVNVLCLQET 123
Query: 118 WRRP 121
W P
Sbjct: 124 WHMP 127
>sp|Q03248|BUP1_RAT Beta-ureidopropionase OS=Rattus norvegicus GN=Upb1 PE=1 SV=1
Length = 393
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 71/120 (59%), Gaps = 6/120 (5%)
Query: 7 FESVETILQKYIPEDELKLVNAVLYGEPLKKLYLPN-----SKSNEFNVVGYKFGAKPES 61
++S+E L+K++P D+L V +LYG+ + L LP + F + GY FGA E
Sbjct: 6 WQSLEQCLEKHLPPDDLSQVKRILYGKQTRNLDLPRKALEAASERNFELKGYAFGAAKEQ 65
Query: 62 SRPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRP 121
R P++VRVG++QN I T S V ++ SA + R+E++ A GVN++C QEAW P
Sbjct: 66 QRCPQIVRVGLVQNRIPLPT-SAPVAEQVSALHKRIEEIAEVAAMCGVNIICFQEAWNMP 124
>sp|Q8VC97|BUP1_MOUSE Beta-ureidopropionase OS=Mus musculus GN=Upb1 PE=2 SV=1
Length = 393
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 70/120 (58%), Gaps = 6/120 (5%)
Query: 7 FESVETILQKYIPEDELKLVNAVLYGEPLKKLYLPN-----SKSNEFNVVGYKFGAKPES 61
++S+E L+K++P D+L V +LYG+ + L LP + F + GY FGA E
Sbjct: 6 WQSLEQCLEKHLPPDDLAQVKRILYGKQTRNLDLPREALKAASERNFELKGYAFGAAKEQ 65
Query: 62 SRPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRP 121
R P++VRVG++QN I T S V ++ SA + +E++ A GVN++C QEAW P
Sbjct: 66 QRCPQIVRVGLVQNRIPLPT-SAPVAEQVSALHKSIEEIAEVAAMCGVNIICFQEAWNMP 124
>sp|Q5RBM6|BUP1_PONAB Beta-ureidopropionase OS=Pongo abelii GN=UPB1 PE=2 SV=1
Length = 384
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 73/126 (57%), Gaps = 10/126 (7%)
Query: 3 ADEPFESVETILQKYIPEDELKLVNAVLYGEPLKKLYLPN-----SKSNEFNVVGYKFGA 57
A ++S+E L+K++P +L+ V VLYG+ L+KL LP + +F + GY F A
Sbjct: 2 AGAEWKSLEECLEKHLPLPDLQEVKRVLYGKELRKLDLPREAFEAASREDFELQGYAFEA 61
Query: 58 KPESSRPPRLVRVGIIQNHIGNSTVSCNVP--QERSATYDRVEKLINAAGESGVNVLCLQ 115
E R PR+V VG++QN I + N P ++ SA + R++ ++ A GVN++C Q
Sbjct: 62 AEEQLRRPRIVHVGLVQNRI---PLPANAPVAEQVSALHRRIKAIVEVAAMCGVNIICFQ 118
Query: 116 EAWRRP 121
EAW P
Sbjct: 119 EAWTMP 124
>sp|Q9UBR1|BUP1_HUMAN Beta-ureidopropionase OS=Homo sapiens GN=UPB1 PE=1 SV=1
Length = 384
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 73/126 (57%), Gaps = 10/126 (7%)
Query: 3 ADEPFESVETILQKYIPEDELKLVNAVLYGEPLKKLYLPN-----SKSNEFNVVGYKFGA 57
A ++S+E L+K++P +L+ V VLYG+ L+KL LP + +F + GY F A
Sbjct: 2 AGAEWKSLEECLEKHLPLPDLQEVKRVLYGKELRKLDLPREAFEAASREDFELQGYAFEA 61
Query: 58 KPESSRPPRLVRVGIIQNHIGNSTVSCNVP--QERSATYDRVEKLINAAGESGVNVLCLQ 115
E R PR+V VG++QN I + N P ++ SA + R++ ++ A GVN++C Q
Sbjct: 62 AEEQLRRPRIVHVGLVQNRI---PLPANAPVAEQVSALHRRIKAIVEVAAMCGVNIICFQ 118
Query: 116 EAWRRP 121
EAW P
Sbjct: 119 EAWTMP 124
>sp|Q5ZM83|MIRO2_CHICK Mitochondrial Rho GTPase 2 OS=Gallus gallus GN=RHOT2 PE=2 SV=1
Length = 618
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 8 ESVETILQKYIPEDELKLVNAVLYGEPLKKLYLPNSKSNEFNVVGYKF 55
E+ TIL+++ +DEL+L + LY + LP S E N +GY+F
Sbjct: 265 ETTWTILRRFGYDDELELTDDYLY----PQFRLPPGCSTELNHLGYQF 308
>sp|Q6DIS1|MIRO2_XENTR Mitochondrial Rho GTPase 2 OS=Xenopus tropicalis GN=rhot2 PE=2 SV=1
Length = 616
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 8 ESVETILQKYIPEDELKLVNAVLYGEPLKKLYLPNSKSNEFNVVGYKFGAK 58
E+ TIL+++ +D L+L + LY PL+ +P+ S E N GY+F K
Sbjct: 265 ETTWTILRRFGYDDALELTDDYLY-PPLR---IPHESSTELNHFGYQFLQK 311
>sp|P28827|PTPRM_HUMAN Receptor-type tyrosine-protein phosphatase mu OS=Homo sapiens
GN=PTPRM PE=1 SV=2
Length = 1452
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 13/109 (11%)
Query: 4 DEPFESVETILQK----YIPEDELKLVNAVLYGEP---LKKLYLPNSKSNEFNVVGYKFG 56
D +E V T+ + ++P LVNA G P L LP K N+ + + + +
Sbjct: 45 DFNWEQVNTLTKPTSDPWMPSGSFMLVNAS--GRPEGQRAHLLLPQLKENDTHCIDFHYF 102
Query: 57 AKPESSRPPRLVRVGIIQNH--IGNSTVSCNVPQERSATYDRVEKLINA 103
+S+ PP L+ V + N+ +GN N+ + + T++R E I+
Sbjct: 103 VSSKSNSPPGLLNVYVKVNNGPLGNPI--WNISGDPTRTWNRAELAIST 149
>sp|Q9Y7B7|GPA1_KLULA Guanine nucleotide-binding protein alpha-1 subunit OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=GPA1 PE=3 SV=4
Length = 447
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 73 IQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQ 115
IQN N + N+ QER+ + V+ L+ AGESG + + Q
Sbjct: 18 IQNKRANDLIEQNLQQERNKNKNEVKLLLLGAGESGKSTVLKQ 60
>sp|Q54T74|SLRA_DICDI S-cell enriched with leucine-rich repeat-containing protein slrA
OS=Dictyostelium discoideum GN=slrA PE=2 SV=1
Length = 1378
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 8/85 (9%)
Query: 42 NSKSNEFNVVGYKFGAKPESSRPPRLVRVGIIQNHI----GNSTVSCNVPQERSATYDRV 97
N EFN+VG FG +S + + N N+ +SC PQ R++TY
Sbjct: 383 NPLGEEFNIVGSDFGINSKSINIQFQNGLHCVDNVTTIIKSNTIISCKNPQGRNSTY--- 439
Query: 98 EKLINAAGESG-VNVLCLQEAWRRP 121
KL GE G V+ Q + RP
Sbjct: 440 LKLTIPTGEPGNFTVIKQQLYYYRP 464
>sp|Q01181|NIFV_RHOSH Homocitrate synthase OS=Rhodobacter sphaeroides GN=nifV PE=3 SV=1
Length = 391
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 69 RVGIIQNHIG----NSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRY 124
R G+++ HIG +S + ++ + D+VEKL+ AA +G V E R D +
Sbjct: 100 RTGVVRLHIGVPVSERQISAKLGKDAAWVRDKVEKLVRAASWAGHKVSVGAEDASRADPF 159
>sp|Q00106|VG65_ICHVA Uncharacterized protein ORF65 OS=Ictalurid herpesvirus 1 (strain
Auburn) GN=ORF65 PE=4 SV=1
Length = 1434
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 9 SVETILQKYIPEDELKLVNAVLYGEPLKKLYLPNSKSNEFNVVGYKFGAKPESS 62
S I+ + + ED+ + LY LK++Y+P + +N + + GA ES+
Sbjct: 1258 SSAVIINESLEEDQFTRLENTLYSMGLKRVYIPGDGNCLYNTLRFIAGADGESA 1311
>sp|Q2U696|DOT1_ASPOR Histone-lysine N-methyltransferase, H3 lysine-79 specific
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=dot1 PE=3 SV=1
Length = 335
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 4 DEPFESVETILQKYIPEDE 22
D+ F+ +ET+ Q YIPEDE
Sbjct: 31 DDIFQVIETVSQNYIPEDE 49
>sp|Q93GG2|BIOB_ACICA Biotin synthase OS=Acinetobacter calcoaceticus GN=bioB PE=3 SV=1
Length = 329
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 23/51 (45%)
Query: 89 ERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGSQVYLIVKRQSDAL 139
E+ D+V AA ESG + C+ AWR P L + R+ AL
Sbjct: 73 EKRIAVDKVISEAQAAKESGSSRFCMGAAWRNPHERDMPYVLEMVREVKAL 123
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.133 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,695,944
Number of Sequences: 539616
Number of extensions: 2045422
Number of successful extensions: 3641
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 3615
Number of HSP's gapped (non-prelim): 26
length of query: 139
length of database: 191,569,459
effective HSP length: 104
effective length of query: 35
effective length of database: 135,449,395
effective search space: 4740728825
effective search space used: 4740728825
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)