Query psy3318
Match_columns 139
No_of_seqs 175 out of 464
Neff 4.2
Searched_HMMs 46136
Date Fri Aug 16 21:54:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3318.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3318hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0808|consensus 100.0 1.9E-48 4.1E-53 329.4 9.5 128 1-130 3-135 (387)
2 cd07587 ML_beta-AS mammalian-l 100.0 1.3E-38 2.9E-43 271.2 10.4 118 10-128 1-123 (363)
3 PLN00202 beta-ureidopropionase 100.0 5.6E-34 1.2E-38 246.7 10.7 123 6-129 16-147 (405)
4 cd07568 ML_beta-AS_like mammal 99.2 6E-11 1.3E-15 95.6 6.7 61 65-127 1-61 (287)
5 COG0388 Predicted amidohydrola 99.0 1.3E-09 2.9E-14 87.5 6.2 52 67-127 2-53 (274)
6 TIGR03381 agmatine_aguB N-carb 99.0 1.2E-09 2.7E-14 87.1 5.9 50 68-127 1-50 (279)
7 PLN02747 N-carbamolyputrescine 98.9 2.1E-09 4.6E-14 87.6 7.0 52 65-126 4-55 (296)
8 cd07569 DCase N-carbamyl-D-ami 98.8 9.5E-09 2.1E-13 84.3 5.9 51 66-122 2-52 (302)
9 cd07566 ScNTA1_like Saccharomy 98.8 1.3E-08 2.9E-13 84.7 6.1 51 69-127 1-55 (295)
10 cd07576 R-amidase_like Pseudom 98.7 2E-08 4.3E-13 79.0 5.9 48 69-125 1-48 (254)
11 cd07564 nitrilases_CHs Nitrila 98.7 1.9E-08 4.2E-13 82.5 5.9 47 68-122 1-47 (297)
12 cd07573 CPA N-carbamoylputresc 98.7 2.4E-08 5.1E-13 80.1 6.2 50 68-127 1-50 (284)
13 PLN02504 nitrilase 98.7 2.1E-08 4.5E-13 85.4 6.1 48 67-122 24-71 (346)
14 cd07570 GAT_Gln-NAD-synth Glut 98.7 2E-08 4.4E-13 79.6 5.5 48 69-125 1-48 (261)
15 cd07578 nitrilase_1_R1 First n 98.7 2.8E-08 6E-13 79.2 5.9 48 68-123 1-48 (258)
16 PRK10438 C-N hydrolase family 98.7 2.6E-08 5.6E-13 80.3 5.6 48 66-123 2-49 (256)
17 cd07574 nitrilase_Rim1_like Un 98.7 2.2E-08 4.7E-13 80.4 4.5 48 68-122 1-48 (280)
18 cd07572 nit Nit1, Nit 2, and r 98.7 3.9E-08 8.4E-13 77.8 5.8 47 69-125 1-47 (265)
19 cd07586 nitrilase_8 Uncharacte 98.6 6.2E-08 1.3E-12 77.2 5.5 49 69-126 1-49 (269)
20 PF00795 CN_hydrolase: Carbon- 98.6 9.3E-08 2E-12 71.6 5.8 49 69-123 1-49 (186)
21 PLN02798 nitrilase 98.6 8.8E-08 1.9E-12 78.0 5.3 49 65-122 8-56 (286)
22 cd07585 nitrilase_7 Uncharacte 98.6 1.1E-07 2.3E-12 75.5 5.5 49 69-126 1-49 (261)
23 cd07580 nitrilase_2 Uncharacte 98.6 1.3E-07 2.9E-12 75.5 6.1 47 69-123 1-47 (268)
24 cd07583 nitrilase_5 Uncharacte 98.6 1.3E-07 2.8E-12 74.7 5.8 50 69-127 1-50 (253)
25 PLN02339 NAD+ synthase (glutam 98.6 1.1E-07 2.3E-12 88.3 6.1 52 66-126 2-53 (700)
26 cd07575 Xc-1258_like Xanthomon 98.6 1.2E-07 2.6E-12 75.5 5.7 47 68-123 1-47 (252)
27 cd07579 nitrilase_1_R2 Second 98.5 1.3E-07 2.7E-12 77.6 5.7 45 69-122 1-45 (279)
28 PRK02628 nadE NAD synthetase; 98.5 1.6E-07 3.5E-12 86.4 6.2 56 63-127 8-63 (679)
29 cd07584 nitrilase_6 Uncharacte 98.5 2.3E-07 4.9E-12 73.5 5.7 46 69-122 1-46 (258)
30 cd07565 aliphatic_amidase alip 98.5 2.4E-07 5.2E-12 76.5 6.0 53 68-124 1-55 (291)
31 cd07567 biotinidase_like bioti 98.5 2.7E-07 5.9E-12 77.5 6.3 56 68-124 1-56 (299)
32 cd07571 ALP_N-acyl_transferase 98.4 3.8E-07 8.1E-12 74.1 5.7 53 68-122 1-53 (270)
33 cd07581 nitrilase_3 Uncharacte 98.4 3.7E-07 8.1E-12 72.0 5.3 46 70-125 1-46 (255)
34 PRK13981 NAD synthetase; Provi 98.4 4.3E-07 9.3E-12 80.8 5.7 49 68-125 1-49 (540)
35 cd07582 nitrilase_4 Uncharacte 98.3 1.3E-06 2.8E-11 71.5 6.6 52 69-124 2-58 (294)
36 PRK13287 amiF formamidase; Pro 98.3 1.4E-06 2.9E-11 74.0 6.7 55 64-122 10-66 (333)
37 cd07197 nitrilase Nitrilase su 98.3 1.1E-06 2.4E-11 68.2 5.5 47 70-124 1-47 (253)
38 cd07577 Ph0642_like Pyrococcus 98.3 9.3E-07 2E-11 70.4 5.2 46 69-125 1-46 (259)
39 PRK13286 amiE acylamide amidoh 98.2 5.1E-06 1.1E-10 71.2 7.0 58 65-126 10-69 (345)
40 KOG0806|consensus 98.1 4.4E-06 9.5E-11 71.6 5.9 53 64-124 10-62 (298)
41 KOG0805|consensus 97.9 2.1E-05 4.7E-10 67.3 5.5 51 64-122 14-64 (337)
42 KOG0807|consensus 97.8 2.1E-05 4.6E-10 66.9 4.7 45 67-120 15-59 (295)
43 TIGR00546 lnt apolipoprotein N 97.1 0.00072 1.6E-08 57.7 5.1 54 66-122 158-211 (391)
44 PRK12291 apolipoprotein N-acyl 97.0 0.0012 2.7E-08 57.9 5.7 58 68-129 195-252 (418)
45 PRK00302 lnt apolipoprotein N- 97.0 0.0013 2.8E-08 58.2 5.4 54 67-125 219-272 (505)
46 PRK13825 conjugal transfer pro 89.8 0.35 7.6E-06 42.5 3.5 31 92-122 206-236 (388)
47 PF03372 Exo_endo_phos: Endonu 80.6 1.4 3E-05 32.2 2.3 25 96-120 17-41 (249)
48 TIGR03395 sphingomy sphingomye 73.6 2.7 5.9E-05 35.0 2.4 24 96-119 24-47 (283)
49 COG2089 SpsE Sialic acid synth 72.0 3.7 8E-05 36.5 2.9 25 92-116 27-51 (347)
50 cd03334 Fab1_TCP TCP-1 like do 70.7 24 0.00052 29.1 7.3 72 45-117 61-139 (261)
51 PRK11756 exonuclease III; Prov 68.7 5.4 0.00012 32.0 3.0 24 94-120 15-38 (268)
52 KOG0358|consensus 66.9 14 0.00031 34.0 5.6 47 68-116 239-297 (534)
53 TIGR00633 xth exodeoxyribonucl 63.0 5.7 0.00012 30.8 2.1 21 101-121 20-40 (255)
54 TIGR00195 exoDNase_III exodeox 58.3 7.8 0.00017 30.7 2.1 22 100-121 18-39 (254)
55 TIGR03569 NeuB_NnaB N-acetylne 56.2 7.9 0.00017 33.6 2.0 24 92-115 13-36 (329)
56 PRK13911 exodeoxyribonuclease 53.4 10 0.00022 31.2 2.1 26 99-124 18-43 (250)
57 COG3568 ElsH Metal-dependent h 48.8 12 0.00027 31.7 2.0 28 89-119 25-52 (259)
58 TIGR00259 thylakoid_BtpA membr 48.7 63 0.0014 27.3 6.2 51 69-122 4-55 (257)
59 TIGR03586 PseI pseudaminic aci 48.3 18 0.00039 31.4 3.0 24 92-115 14-37 (327)
60 cd07945 DRE_TIM_CMS Leptospira 47.1 34 0.00074 28.7 4.3 34 90-123 110-143 (280)
61 COG0708 XthA Exonuclease III [ 45.9 24 0.00051 30.1 3.2 30 94-126 15-44 (261)
62 PF03437 BtpA: BtpA family; I 45.7 74 0.0016 26.8 6.2 51 69-122 5-56 (254)
63 PRK09856 fructoselysine 3-epim 45.2 35 0.00076 27.1 4.0 30 87-116 82-111 (275)
64 KOG2303|consensus 41.5 38 0.00083 32.3 4.1 51 65-125 2-53 (706)
65 TIGR00542 hxl6Piso_put hexulos 40.6 50 0.0011 26.5 4.3 29 87-115 86-114 (279)
66 PLN03144 Carbon catabolite rep 40.5 24 0.00053 33.3 2.7 22 96-117 286-307 (606)
67 COG0815 Lnt Apolipoprotein N-a 40.2 36 0.00078 31.3 3.7 53 66-120 226-280 (518)
68 PRK13209 L-xylulose 5-phosphat 37.3 62 0.0014 25.9 4.3 30 86-115 90-119 (283)
69 PRK13210 putative L-xylulose 5 36.3 66 0.0014 25.5 4.3 29 87-115 86-114 (284)
70 PRK01060 endonuclease IV; Prov 35.6 87 0.0019 25.0 4.9 30 85-114 79-108 (281)
71 cd00003 PNPsynthase Pyridoxine 35.5 24 0.00052 29.8 1.7 24 100-126 136-159 (234)
72 smart00518 AP2Ec AP endonuclea 34.7 71 0.0015 25.4 4.3 29 86-114 75-103 (273)
73 TIGR00612 ispG_gcpE 1-hydroxy- 34.7 40 0.00086 30.1 3.0 46 63-112 2-51 (346)
74 PRK05421 hypothetical protein; 34.2 35 0.00076 27.7 2.4 14 106-119 67-80 (263)
75 TIGR00559 pdxJ pyridoxine 5'-p 34.0 26 0.00057 29.6 1.7 59 45-127 100-160 (237)
76 COG0854 PdxJ Pyridoxal phospha 34.0 32 0.00068 29.3 2.2 25 100-127 137-161 (243)
77 TIGR02342 chap_CCT_delta T-com 33.9 2E+02 0.0043 26.0 7.3 74 45-118 196-283 (517)
78 cd06309 PBP1_YtfQ_like Peripla 32.6 85 0.0018 24.2 4.3 35 69-114 1-35 (273)
79 PRK05265 pyridoxine 5'-phospha 32.4 29 0.00063 29.4 1.7 57 45-125 103-161 (239)
80 PRK00366 ispG 4-hydroxy-3-meth 32.3 43 0.00094 30.0 2.9 47 62-112 9-59 (360)
81 TIGR00530 AGP_acyltrn 1-acyl-s 32.3 64 0.0014 22.1 3.2 27 95-121 76-102 (130)
82 TIGR00587 nfo apurinic endonuc 32.2 81 0.0018 25.8 4.3 31 84-114 77-107 (274)
83 KOG3235|consensus 31.6 9.3 0.0002 31.3 -1.3 17 106-122 15-31 (193)
84 PF03786 UxuA: D-mannonate deh 31.5 67 0.0015 28.5 3.9 31 89-122 79-109 (351)
85 PRK04044 rps5p 30S ribosomal p 31.3 29 0.00062 28.8 1.5 40 5-44 22-61 (211)
86 PF11900 DUF3420: Domain of un 31.2 42 0.00092 21.8 2.0 18 12-29 5-22 (49)
87 PF04898 Glu_syn_central: Glut 31.0 1.2E+02 0.0025 26.3 5.2 45 68-116 119-163 (287)
88 KOG2338|consensus 30.9 41 0.00089 31.3 2.5 31 92-122 146-176 (495)
89 KOG3250|consensus 29.0 34 0.00073 29.3 1.5 25 97-122 26-50 (258)
90 PF01553 Acyltransferase: Acyl 28.1 1.1E+02 0.0023 21.0 3.8 28 94-121 77-104 (132)
91 smart00563 PlsC Phosphate acyl 27.9 1.1E+02 0.0024 20.2 3.7 28 94-122 62-89 (118)
92 PF15605 Toxin_52: Putative to 27.4 61 0.0013 24.3 2.5 30 7-36 10-39 (103)
93 PRK15018 1-acyl-sn-glycerol-3- 27.0 1E+02 0.0022 25.3 4.0 32 91-122 122-153 (245)
94 PF03740 PdxJ: Pyridoxal phosp 26.9 22 0.00047 30.1 0.1 21 100-123 137-157 (239)
95 cd04795 SIS SIS domain. SIS (S 26.6 92 0.002 19.9 3.1 18 97-114 63-80 (87)
96 PTZ00070 40S ribosomal protein 26.5 55 0.0012 28.1 2.4 40 5-44 50-91 (257)
97 PRK10727 DNA-binding transcrip 26.3 1.1E+02 0.0023 24.8 4.0 52 51-114 43-95 (343)
98 cd00019 AP2Ec AP endonuclease 26.3 1.2E+02 0.0026 24.2 4.3 28 87-114 77-104 (279)
99 COG4130 Predicted sugar epimer 26.2 76 0.0016 27.3 3.2 25 90-114 78-102 (272)
100 TIGR00695 uxuA mannonate dehyd 26.0 88 0.0019 28.2 3.7 27 88-114 76-102 (394)
101 KOG2756|consensus 25.9 74 0.0016 28.2 3.1 39 92-136 114-152 (349)
102 cd03335 TCP1_alpha TCP-1 (CTT 25.9 3.1E+02 0.0068 24.7 7.2 74 45-118 198-284 (527)
103 TIGR00683 nanA N-acetylneurami 25.9 93 0.002 25.9 3.7 37 93-133 81-117 (290)
104 cd05014 SIS_Kpsf KpsF-like pro 25.5 1.1E+02 0.0024 21.3 3.5 28 96-123 62-89 (128)
105 PRK11440 putative hydrolase; P 25.0 1.7E+02 0.0037 22.3 4.7 30 89-118 29-58 (188)
106 KOG2450|consensus 24.7 93 0.002 29.1 3.7 27 91-117 348-374 (501)
107 PRK11041 DNA-binding transcrip 24.6 1.1E+02 0.0025 23.9 3.8 42 61-113 29-70 (309)
108 PRK02877 hypothetical protein; 24.3 1.3E+02 0.0028 22.2 3.7 23 91-113 56-78 (106)
109 PF10042 DUF2278: Uncharacteri 24.3 1.9E+02 0.0041 23.8 5.1 30 90-119 117-146 (206)
110 PF08238 Sel1: Sel1 repeat; I 24.0 1.1E+02 0.0024 16.7 2.8 17 92-108 22-38 (39)
111 PF01906 YbjQ_1: Putative heav 24.0 1.3E+02 0.0029 21.4 3.8 23 91-113 56-78 (105)
112 cd05008 SIS_GlmS_GlmD_1 SIS (S 23.8 1E+02 0.0022 21.4 3.1 27 96-122 61-87 (126)
113 PF01583 APS_kinase: Adenylyls 23.8 1.4E+02 0.0031 23.2 4.2 33 87-122 53-85 (156)
114 PRK12855 hypothetical protein; 23.7 1.3E+02 0.0029 22.1 3.7 22 92-113 57-78 (103)
115 TIGR03215 ac_ald_DH_ac acetald 22.7 1E+02 0.0022 26.2 3.3 27 96-122 76-102 (285)
116 PRK07328 histidinol-phosphatas 22.6 99 0.0021 25.2 3.2 27 96-122 19-45 (269)
117 COG0034 PurF Glutamine phospho 22.6 1.2E+02 0.0026 28.2 3.9 54 69-133 350-407 (470)
118 COG0219 CspR Predicted rRNA me 22.6 1.4E+02 0.0029 23.9 3.8 38 67-125 2-39 (155)
119 smart00481 POLIIIAc DNA polyme 22.5 1E+02 0.0022 19.6 2.6 27 96-122 16-42 (67)
120 cd07566 ScNTA1_like Saccharomy 22.5 79 0.0017 26.4 2.6 24 99-122 183-206 (295)
121 TIGR01020 rpsE_arch ribosomal 22.4 72 0.0016 26.5 2.3 40 5-44 21-61 (212)
122 TIGR02339 thermosome_arch ther 21.8 2.2E+02 0.0049 25.5 5.5 74 45-118 206-292 (519)
123 COG5239 CCR4 mRNA deadenylase, 21.3 76 0.0017 28.7 2.4 27 94-120 59-85 (378)
124 cd07993 LPLAT_DHAPAT-like Lyso 21.2 1.2E+02 0.0025 23.6 3.2 27 96-122 89-115 (205)
125 PF01261 AP_endonuc_2: Xylose 21.1 1.4E+02 0.003 21.8 3.4 26 90-115 66-91 (213)
126 TIGR03884 sel_bind_Methan sele 21.1 1.2E+02 0.0026 21.5 2.9 18 96-113 30-47 (74)
127 COG0529 CysC Adenylylsulfate k 20.9 1.7E+02 0.0037 24.3 4.1 33 87-122 74-106 (197)
128 PRK12856 hypothetical protein; 20.9 1.6E+02 0.0036 21.6 3.7 22 92-113 57-78 (103)
129 cd00431 cysteine_hydrolases Cy 20.7 3.1E+02 0.0066 19.8 5.2 34 88-121 20-53 (161)
130 cd07565 aliphatic_amidase alip 20.4 1.1E+02 0.0024 25.2 3.1 23 100-122 161-183 (291)
131 TIGR02313 HpaI-NOT-DapA 2,4-di 20.2 1.6E+02 0.0034 24.6 3.9 37 93-133 80-116 (294)
132 PF04745 Pox_A8: VITF-3 subuni 20.1 1.2E+02 0.0027 26.4 3.3 99 1-113 102-240 (288)
No 1
>KOG0808|consensus
Probab=100.00 E-value=1.9e-48 Score=329.43 Aligned_cols=128 Identities=39% Similarity=0.682 Sum_probs=124.9
Q ss_pred CCCCCCcchHHHHHHcCCChHHHHHHHHHHhCCCCccccCCccc-----cCCeeeeeeeccCCCCCCCCCccceEEEEec
Q psy3318 1 MSADEPFESVETILQKYIPEDELKLVNAVLYGEPLKKLYLPNSK-----SNEFNVVGYKFGAKPESSRPPRLVRVGIIQN 75 (139)
Q Consensus 1 m~~~~~~~sle~~l~~~lp~~~l~ev~riLyG~~~~~l~lp~~a-----~~~Fel~~y~f~a~~EqlR~pr~VrVGLIQ~ 75 (139)
|+. ++|.|||++|++||++..|+||+|+|||+++++|+||++| ++||+||||.|+|++||+|.||.||||+|||
T Consensus 3 ~a~-a~~dsle~~l~~~l~~~~lqev~r~lygr~lr~l~lp~~a~~las~~df~lqgy~f~a~keq~r~pr~vrvgliqn 81 (387)
T KOG0808|consen 3 GAI-AGYDSLEQLLSANLKPELLQEVNRLLYGRSLRQLVLPESAKALASKHDFDLQGYSFSADKEQMRNPRVVRVGLIQN 81 (387)
T ss_pred Ccc-cccchHHHHHHhcCChHHHHHHHHHHhCCchhhhcCchHHHHhhcccCcceeeeeeccchhhhcCCcEEEEeeecc
Confidence 445 7999999999999999999999999999999999999999 8999999999999999999999999999999
Q ss_pred ccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCCchhhh
Q psy3318 76 HIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGSQVYL 130 (139)
Q Consensus 76 si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFCt~Ed~ 130 (139)
+|..||+ +||.+|+.++++|++.+|++||.+|||||||||+|+|||||||||.+
T Consensus 82 ~i~lptt-apv~eq~~aih~r~kaiieaaa~agvniiclqeawtmpfafctrerl 135 (387)
T KOG0808|consen 82 SIALPTT-APVSEQTRAIHDRLKAIIEAAAVAGVNIICLQEAWTMPFAFCTRERL 135 (387)
T ss_pred cccCCCC-CcHHHHHHHHHHHHHHHHHHHHhcCccEEEeehhhcCchhhhccccC
Confidence 9999999 99999999999999999999999999999999999999999999976
No 2
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=100.00 E-value=1.3e-38 Score=271.16 Aligned_cols=118 Identities=47% Similarity=0.841 Sum_probs=114.0
Q ss_pred HHHHHHcCCChHHHHHHHHHHhCCCCccccCCccc-----cCCeeeeeeeccCCCCCCCCCccceEEEEecccCCCCCCC
Q psy3318 10 VETILQKYIPEDELKLVNAVLYGEPLKKLYLPNSK-----SNEFNVVGYKFGAKPESSRPPRLVRVGIIQNHIGNSTVSC 84 (139)
Q Consensus 10 le~~l~~~lp~~~l~ev~riLyG~~~~~l~lp~~a-----~~~Fel~~y~f~a~~EqlR~pr~VrVGLIQ~si~~~t~~a 84 (139)
||++|++|||+++|+||+|||||+++++|+||+++ ++||||+||+|+|++||+|+||.||||+||+.+..+|+ +
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rIAlvQ~~~~~~~~-~ 79 (363)
T cd07587 1 LEDLLEKHLPPEELKEVKRILYGEEVKPLELPESALDLAKENDFELKGYKFEAAPEQTRPPRIVRVGLIQNKIVLPTT-A 79 (363)
T ss_pred ChhHHhhhCCHHHHHHHHHHHcCCCCccCCCCHHHHHHHHhcCceEEEeecCCChhhcCCCceEEEEEEecccccccc-C
Confidence 68999999999999999999999999999999998 89999999999999999999999999999999988877 8
Q ss_pred CchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCCchh
Q psy3318 85 NVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGSQV 128 (139)
Q Consensus 85 pv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFCt~E 128 (139)
|+..|+++|++|+..+|++|+++||+||||||+|.+||.||+++
T Consensus 80 p~~~d~~~nl~ki~~~i~~Aa~~gadLivfPE~~l~g~~~~~~~ 123 (363)
T cd07587 80 PIAEQREAIHDRIKKIIEAAAMAGVNIICFQEAWTMPFAFCTRE 123 (363)
T ss_pred ccccCHHHHHHHHHHHHHHHHHcCCCEEEccccccCCccccccc
Confidence 99999999999999999999999999999999999999999764
No 3
>PLN00202 beta-ureidopropionase
Probab=100.00 E-value=5.6e-34 Score=246.71 Aligned_cols=123 Identities=36% Similarity=0.693 Sum_probs=117.4
Q ss_pred CcchHHHHHHcCCChHHHHHHHHHHhC----CCCccccCCccc-----cCCeeeeeeeccCCCCCCCCCccceEEEEecc
Q psy3318 6 PFESVETILQKYIPEDELKLVNAVLYG----EPLKKLYLPNSK-----SNEFNVVGYKFGAKPESSRPPRLVRVGIIQNH 76 (139)
Q Consensus 6 ~~~sle~~l~~~lp~~~l~ev~riLyG----~~~~~l~lp~~a-----~~~Fel~~y~f~a~~EqlR~pr~VrVGLIQ~s 76 (139)
+|+|||++|++|||+++|+||+||||| +++++|+||..+ ..+|++++|.|.+.+||||+++.+|||+||+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rValiQ~~ 95 (405)
T PLN00202 16 GYESLHRLLSANLPPELFQEVSRLLLGLNCGRPVEMIALPEAAKALSKAHDFDLQAFRFTADKEQLRAPRVVRVGLIQNS 95 (405)
T ss_pred hhhhHHHHHHhhCCHHHHHHHHHHHhCcccCCccccCCCCHHHHHHHHhcCceEEEeeecCCHhHcCCCCeEEEEEEecc
Confidence 499999999999999999999999999 899999999888 88999999999999999999999999999999
Q ss_pred cCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCCchhh
Q psy3318 77 IGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGSQVY 129 (139)
Q Consensus 77 i~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFCt~Ed 129 (139)
+..+++ .|+..++++|++++..+|++|+..||+||||||+|++||.||+++.
T Consensus 96 i~~~~~-~~~~~~~~~nl~~~~~li~~Aa~~gadLVvfPE~~~~g~~~~~~~~ 147 (405)
T PLN00202 96 IALPTT-APFADQKRAIMDKVKPMIDAAGAAGVNILCLQEAWTMPFAFCTREK 147 (405)
T ss_pred cccCCC-CcccCCHHHHHHHHHHHHHHHHHCCCCEEEecchhccccccccccc
Confidence 988888 8999999999999999999999999999999999999999988643
No 4
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=99.17 E-value=6e-11 Score=95.62 Aligned_cols=61 Identities=30% Similarity=0.519 Sum_probs=52.8
Q ss_pred CccceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCCch
Q psy3318 65 PRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGSQ 127 (139)
Q Consensus 65 pr~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFCt~ 127 (139)
.|.+|||++|+.+..+.+ .|+..++++|++++.++|++|++.||+||||||+|.+|| ||..
T Consensus 1 ~~~~rva~vQ~~~~~~~~-~~~~~~~~~nl~~~~~~i~~A~~~gadlvvfPE~~~~g~-~~~~ 61 (287)
T cd07568 1 SRIVRVGLIQASNVIPTD-APIEKQKEAMIQKHVTMIREAAEAGAQIVCLQEIFYGPY-FCAE 61 (287)
T ss_pred CceEEEEEEEeecccccc-cccccCHHHHHHHHHHHHHHHHHcCCcEEEcccccCCCC-Cccc
Confidence 367999999999764443 455678999999999999999999999999999999999 8754
No 5
>COG0388 Predicted amidohydrolase [General function prediction only]
Probab=98.95 E-value=1.3e-09 Score=87.49 Aligned_cols=52 Identities=17% Similarity=0.242 Sum_probs=46.3
Q ss_pred cceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCCch
Q psy3318 67 LVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGSQ 127 (139)
Q Consensus 67 ~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFCt~ 127 (139)
.+||+++|+.. ...++.+|++++.++|++|++.||+||+|||+|.++| +|..
T Consensus 2 ~~rvA~~Q~~~--------~~~d~~~N~~~~~~~i~~a~~~ga~LvvfPEl~~tgy-~~~~ 53 (274)
T COG0388 2 MMRVAAAQMAP--------KAGDPAENLARILRLIREAAARGADLVVFPELFLTGY-PCED 53 (274)
T ss_pred ceEEEEEEecC--------CCCCHHHHHHHHHHHHHHHHHcCCCEEECCcccccCC-Cccc
Confidence 58999999963 3345789999999999999999999999999999999 8874
No 6
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=98.95 E-value=1.2e-09 Score=87.14 Aligned_cols=50 Identities=22% Similarity=0.409 Sum_probs=44.6
Q ss_pred ceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCCch
Q psy3318 68 VRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGSQ 127 (139)
Q Consensus 68 VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFCt~ 127 (139)
+|||++|+... .++++|++++.++|++|++.||+||||||+|.++| +|..
T Consensus 1 ~~ia~~Q~~~~---------~d~~~Nl~~~~~~i~~A~~~gadlivfPE~~~~gy-~~~~ 50 (279)
T TIGR03381 1 VTVAALQMACS---------DDVETNIARAERLVREAAARGAQIILLPELFEGPY-FCKD 50 (279)
T ss_pred CEEEEEEeecc---------CCHHHHHHHHHHHHHHHHHCCCCEEEcccccCCCC-cCCc
Confidence 68999999653 35889999999999999999999999999999999 7753
No 7
>PLN02747 N-carbamolyputrescine amidase
Probab=98.94 E-value=2.1e-09 Score=87.58 Aligned_cols=52 Identities=27% Similarity=0.406 Sum_probs=46.5
Q ss_pred CccceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCCc
Q psy3318 65 PRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGS 126 (139)
Q Consensus 65 pr~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFCt 126 (139)
.|.+|||++|+.+. .+.++|++++.++|++|++.||+||||||+|.++| +|.
T Consensus 4 ~~~~~va~~Q~~~~---------~d~~~N~~~i~~~i~~A~~~gadlvvfPE~~l~g~-~~~ 55 (296)
T PLN02747 4 GRKVVVAALQFACS---------DDRAANVDKAERLVREAHAKGANIILIQELFEGYY-FCQ 55 (296)
T ss_pred CcceEEEEEEecCC---------CCHHHHHHHHHHHHHHHHHCCCcEEEcccccCCCC-Ccc
Confidence 45699999999753 24889999999999999999999999999999999 886
No 8
>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases). DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers.
Probab=98.79 E-value=9.5e-09 Score=84.30 Aligned_cols=51 Identities=18% Similarity=0.132 Sum_probs=43.2
Q ss_pred ccceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCC
Q psy3318 66 RLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPD 122 (139)
Q Consensus 66 r~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~Py 122 (139)
|.+|||++|+.... ...++++|++++.++|++|++.||+||||||+|.+.|
T Consensus 2 ~~~rva~~Q~~~~~------~~~~~~~n~~~i~~~i~~A~~~gadlivfPE~~l~g~ 52 (302)
T cd07569 2 RQVILAAAQMGPIA------RAETRESVVARLIALLEEAASRGAQLVVFPELALTTF 52 (302)
T ss_pred ceEEEEEEeecccc------ccCCHHHHHHHHHHHHHHHHhCCCcEEEcccccccCc
Confidence 46899999995421 1125889999999999999999999999999999887
No 9
>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases). Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3.
Probab=98.76 E-value=1.3e-08 Score=84.74 Aligned_cols=51 Identities=16% Similarity=0.146 Sum_probs=44.1
Q ss_pred eEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHh----CCCeEEEccccccCCCCCCch
Q psy3318 69 RVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGE----SGVNVLCLQEAWRRPDRYGSQ 127 (139)
Q Consensus 69 rVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~----~GanIICLQElf~~PyaFCt~ 127 (139)
|||++|+.+ ...++++|++++.++|++|++ .||+||||||+|.++|.|+..
T Consensus 1 rIA~vQ~~~--------~~~d~~~Nl~~~~~~i~~A~~~~~~~gadLIVfPEl~ltGY~~~~~ 55 (295)
T cd07566 1 RIACLQLNP--------QIGQVEENLSRAWELLDKTKKRAKLKKPDILVLPELALTGYNFHSL 55 (295)
T ss_pred CEEEEECCC--------ccCCHHHHHHHHHHHHHHHHhhccCCCCcEEEcCCCCcccCCcccH
Confidence 699999963 234688999999999999998 899999999999999966643
No 10
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=98.73 E-value=2e-08 Score=78.98 Aligned_cols=48 Identities=17% Similarity=0.226 Sum_probs=42.4
Q ss_pred eEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCC
Q psy3318 69 RVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYG 125 (139)
Q Consensus 69 rVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFC 125 (139)
|||++|..+ ...+.++|++++.++|++|+++||+||||||+|.+.| .+
T Consensus 1 kva~~Q~~~--------~~~d~~~n~~~i~~~i~~a~~~ga~lvv~PE~~l~g~-~~ 48 (254)
T cd07576 1 RLALYQGPA--------RDGDVAANLARLDEAAARAAAAGADLLVFPELFLTGY-NI 48 (254)
T ss_pred CEEEEecCC--------CCCCHHHHHHHHHHHHHHHHHcCCCEEEccCccccCC-CC
Confidence 799999965 2345889999999999999999999999999999988 54
No 11
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases). Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that
Probab=98.73 E-value=1.9e-08 Score=82.45 Aligned_cols=47 Identities=26% Similarity=0.337 Sum_probs=42.1
Q ss_pred ceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCC
Q psy3318 68 VRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPD 122 (139)
Q Consensus 68 VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~Py 122 (139)
+||+++|+.+ ...++++|++++.++|+.|+++||+||||||+|.+.|
T Consensus 1 ~kia~~Q~~~--------~~~d~~~nl~~~~~~i~~A~~~ga~lvvfPE~~l~gy 47 (297)
T cd07564 1 VKVAAVQAAP--------VFLDLAATVEKACRLIEEAAANGAQLVVFPEAFIPGY 47 (297)
T ss_pred CEEEEEecCc--------ccCCHHHHHHHHHHHHHHHHHCCCCEEEeccccccCC
Confidence 5899999953 3346889999999999999999999999999999988
No 12
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.
Probab=98.73 E-value=2.4e-08 Score=80.13 Aligned_cols=50 Identities=26% Similarity=0.553 Sum_probs=44.8
Q ss_pred ceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCCch
Q psy3318 68 VRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGSQ 127 (139)
Q Consensus 68 VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFCt~ 127 (139)
+|||++|+.+. .+.+.|++++.++|++|++.||+||+|||+|.++| ||..
T Consensus 1 ~~ia~~Q~~~~---------~d~~~n~~~~~~~i~~A~~~gadlivfPE~~l~g~-~~~~ 50 (284)
T cd07573 1 VTVALVQMACS---------EDPEANLAKAEELVREAAAQGAQIVCLQELFETPY-FCQE 50 (284)
T ss_pred CEEEEEEeecc---------CCHHHHHHHHHHHHHHHHHCCCcEEEccccccCCC-Cccc
Confidence 58999999753 34789999999999999999999999999999999 8864
No 13
>PLN02504 nitrilase
Probab=98.72 E-value=2.1e-08 Score=85.37 Aligned_cols=48 Identities=27% Similarity=0.339 Sum_probs=42.7
Q ss_pred cceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCC
Q psy3318 67 LVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPD 122 (139)
Q Consensus 67 ~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~Py 122 (139)
.+|||++|+.+. ..++++|++++.++|++|++.||+||||||+|.+.|
T Consensus 24 ~~kiAlvQ~~~~--------~~d~~~nl~~~~~li~eAa~~gadLIVfPE~~ltGy 71 (346)
T PLN02504 24 TVRATVVQASTV--------FYDTPATLDKAERLIAEAAAYGSQLVVFPEAFIGGY 71 (346)
T ss_pred ceEEEEEEcCcc--------cCCHHHHHHHHHHHHHHHHHCCCeEEEeCccccccC
Confidence 489999999643 335789999999999999999999999999999877
No 14
>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases). Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this sub
Probab=98.72 E-value=2e-08 Score=79.62 Aligned_cols=48 Identities=13% Similarity=0.124 Sum_probs=42.5
Q ss_pred eEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCC
Q psy3318 69 RVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYG 125 (139)
Q Consensus 69 rVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFC 125 (139)
|||++|+.+. ..+.++|++++.++|++|++.||+||||||+|.+.| ++
T Consensus 1 ria~~Q~~~~--------~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~l~gy-~~ 48 (261)
T cd07570 1 RIALAQLNPT--------VGDLEGNAEKILEAIREAKAQGADLVVFPELSLTGY-PP 48 (261)
T ss_pred CEEEEeCCCc--------CCCHHHHHHHHHHHHHHHHHcCCCEEEccchhccCC-Ch
Confidence 6999999642 235889999999999999999999999999999998 55
No 15
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=98.70 E-value=2.8e-08 Score=79.23 Aligned_cols=48 Identities=17% Similarity=0.140 Sum_probs=42.5
Q ss_pred ceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCC
Q psy3318 68 VRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDR 123 (139)
Q Consensus 68 VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~Pya 123 (139)
+|||++|... +..+.++|++++.++|++|++.||+||||||+|.+.|.
T Consensus 1 ~ria~~Q~~~--------~~~d~~~n~~~~~~~i~~A~~~gadlivfPE~~l~gy~ 48 (258)
T cd07578 1 YKAAAIQFEP--------EMGEKERNIERLLALCEEAARAGARLIVTPEMATTGYC 48 (258)
T ss_pred CeEEEEEecC--------ccccHHHHHHHHHHHHHHHHhCCCCEEEcccccccCCC
Confidence 5899999953 33467899999999999999999999999999999883
No 16
>PRK10438 C-N hydrolase family amidase; Provisional
Probab=98.70 E-value=2.6e-08 Score=80.29 Aligned_cols=48 Identities=15% Similarity=0.281 Sum_probs=40.7
Q ss_pred ccceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCC
Q psy3318 66 RLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDR 123 (139)
Q Consensus 66 r~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~Pya 123 (139)
+++|||++|+.. +..++++|++++.++|++| .||+||||||+|.+.|.
T Consensus 2 ~~mkia~~Q~~~--------~~~d~~~Nl~~~~~~i~~a--~gadLivfPE~~~~Gy~ 49 (256)
T PRK10438 2 SGLKITLLQQPL--------VWMDGPANLRHFDRQLEGI--TGRDVIVLPEMFTTGFA 49 (256)
T ss_pred CCCEEEEEEecC--------ccCCHHHHHHHHHHHHHhc--cCCCEEEeCCcccCCCc
Confidence 358999999954 3345889999999999986 69999999999999883
No 17
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases). Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=98.67 E-value=2.2e-08 Score=80.38 Aligned_cols=48 Identities=21% Similarity=0.197 Sum_probs=41.8
Q ss_pred ceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCC
Q psy3318 68 VRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPD 122 (139)
Q Consensus 68 VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~Py 122 (139)
+|||++|..+..+ .++++|+++++.+|++|++.||+||||||+|.++|
T Consensus 1 m~va~~Q~~~~~~-------~~~~~n~~~i~~~i~~A~~~gadlivfPE~~~~g~ 48 (280)
T cd07574 1 VRVAAAQYPLRRY-------ASFEEFAAKVEYWVAEAAGYGADLLVFPEYFTMEL 48 (280)
T ss_pred CeeEEEEccCcCC-------CCHHHHHHHHHHHHHHHHHcCCCEEECchHhHHHH
Confidence 6899999975322 34789999999999999999999999999999875
No 18
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t
Probab=98.67 E-value=3.9e-08 Score=77.80 Aligned_cols=47 Identities=28% Similarity=0.452 Sum_probs=42.4
Q ss_pred eEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCC
Q psy3318 69 RVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYG 125 (139)
Q Consensus 69 rVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFC 125 (139)
|||++|+.+. .+.++|++++.++|+.|++.||+||||||+|.++| +|
T Consensus 1 kia~~Q~~~~---------~d~~~n~~~~~~~i~~A~~~g~dlivfPE~~l~g~-~~ 47 (265)
T cd07572 1 RVALIQMTST---------ADKEANLARAKELIEEAAAQGAKLVVLPECFNYPG-GT 47 (265)
T ss_pred CEEEEEeeCC---------CCHHHHHHHHHHHHHHHHHCCCCEEECCccccCcC-cc
Confidence 6999999753 35889999999999999999999999999999999 55
No 19
>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=98.62 E-value=6.2e-08 Score=77.16 Aligned_cols=49 Identities=20% Similarity=0.186 Sum_probs=42.8
Q ss_pred eEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCCc
Q psy3318 69 RVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGS 126 (139)
Q Consensus 69 rVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFCt 126 (139)
|||++|+.. ...+.+.|++++.++|++|+++||+||||||+|.+.| .|.
T Consensus 1 kia~~q~~~--------~~~~~~~n~~~~~~~i~~A~~~ga~liv~PE~~~~g~-~~~ 49 (269)
T cd07586 1 RVAIAQIDP--------VLGDVEENLEKHLEIIETARERGADLVVFPELSLTGY-NLG 49 (269)
T ss_pred CEEEEecCC--------ccCcHHHHHHHHHHHHHHHHHcCCCEEEecchhccCC-Cch
Confidence 699999953 2246889999999999999999999999999999988 664
No 20
>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production []. They all have distinct substrate specificity and include cyanide hydratases, aliphatic amidases, beta-alanine synthase, and a few other proteins with unknown molecular function. Sequence conservation over the entire length, as well as the similarity in the reactions catalyzed by the known enzymes in this family, points to a common catalytic mechanism. They have an invariant cysteine that is part of the catalytic site in nitrilases. Another highly conserved motif includes an invariant glutamic acid that might also be involved in catalysis [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0006807 nitrogen compound metabolic process; PDB: 2E2L_D 2E2K_D 2DYV_A 2DYU_B 3KLC_B 3IW3_A 3KI8_A 3IVZ_A 1EMS_A 2GGK_B ....
Probab=98.60 E-value=9.3e-08 Score=71.60 Aligned_cols=49 Identities=18% Similarity=0.230 Sum_probs=42.2
Q ss_pred eEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCC
Q psy3318 69 RVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDR 123 (139)
Q Consensus 69 rVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~Pya 123 (139)
|||++|..+ ..+..+.++|++++.+++++|+.+|++||||||+|.++|.
T Consensus 1 ~VA~~Q~~~------~~~~~~~~~n~~~i~~~~~~a~~~~~dlvv~PE~~~~~~~ 49 (186)
T PF00795_consen 1 RVALVQLNI------DQSWGDPEENLKKILSLIEEAARQGADLVVFPEMALPGYP 49 (186)
T ss_dssp EEEEEEB-B-------SSTTHHHHHHHHHHHHHHHHHHTTESEEEEETTTTTCS-
T ss_pred CEEEEECCc------cCccCCHHHHHHHHHHHHHHHHHCCCCEEEcCcchhcccc
Confidence 799999854 1256689999999999999999999999999999999983
No 21
>PLN02798 nitrilase
Probab=98.57 E-value=8.8e-08 Score=78.04 Aligned_cols=49 Identities=22% Similarity=0.318 Sum_probs=41.5
Q ss_pred CccceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCC
Q psy3318 65 PRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPD 122 (139)
Q Consensus 65 pr~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~Py 122 (139)
++.+||+++|+.+. .+.+.|++++.++|++|++.||+||||||+|...+
T Consensus 8 ~~~~ria~~Q~~~~---------~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~~~~g 56 (286)
T PLN02798 8 GSSVRVAVAQMTST---------NDLAANFATCSRLAKEAAAAGAKLLFLPECFSFIG 56 (286)
T ss_pred cCccEEEEEEccCC---------CCHHHHHHHHHHHHHHHHHCCCCEEEcCCCccccC
Confidence 35699999998642 24789999999999999999999999999986443
No 22
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=98.56 E-value=1.1e-07 Score=75.49 Aligned_cols=49 Identities=12% Similarity=0.249 Sum_probs=42.7
Q ss_pred eEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCCc
Q psy3318 69 RVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGS 126 (139)
Q Consensus 69 rVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFCt 126 (139)
|||++|+.+. ..+.+.|++++..+|++|++.||+||||||+|.+.| +|.
T Consensus 1 ~ia~~Q~~~~--------~~~~~~n~~~i~~~i~~a~~~gadliv~PE~~l~g~-~~~ 49 (261)
T cd07585 1 RIALVQFEAR--------VGDKARNLAVIARWTRKAAAQGAELVCFPEMCITGY-THV 49 (261)
T ss_pred CEEEEEeecC--------CCCHHHHHHHHHHHHHHHHHcCCCEEEecccccccc-cCC
Confidence 6999999752 235889999999999999999999999999999888 653
No 23
>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=98.56 E-value=1.3e-07 Score=75.53 Aligned_cols=47 Identities=26% Similarity=0.246 Sum_probs=41.7
Q ss_pred eEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCC
Q psy3318 69 RVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDR 123 (139)
Q Consensus 69 rVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~Pya 123 (139)
|||++|..+ ...+.++|++++.+++++|+++|++||||||+|.+.|.
T Consensus 1 ria~~Q~~~--------~~~~~~~n~~~~~~~i~~a~~~g~dlvvfPE~~l~g~~ 47 (268)
T cd07580 1 RVACVQFDP--------RVGDLDANLARSIELIREAADAGANLVVLPELANTGYV 47 (268)
T ss_pred CEEEEEccC--------ccCcHHHHHHHHHHHHHHHHHcCCCEEEcCCcccccCC
Confidence 699999964 23468899999999999999999999999999999883
No 24
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=98.56 E-value=1.3e-07 Score=74.73 Aligned_cols=50 Identities=28% Similarity=0.479 Sum_probs=43.7
Q ss_pred eEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCCch
Q psy3318 69 RVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGSQ 127 (139)
Q Consensus 69 rVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFCt~ 127 (139)
|||++|..+. ..+.++|++++.++|++|++.|++||||||+|.+.| ++..
T Consensus 1 rva~~Q~~~~--------~~d~~~n~~~i~~~i~~A~~~g~dlvv~PE~~l~g~-~~~~ 50 (253)
T cd07583 1 KIALIQLDIV--------WGDPEANIERVESLIEEAAAAGADLIVLPEMWNTGY-FLDD 50 (253)
T ss_pred CEEEEEeecC--------cCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccCCCC-Chhh
Confidence 6999999753 235889999999999999999999999999999999 6644
No 25
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=98.56 E-value=1.1e-07 Score=88.31 Aligned_cols=52 Identities=15% Similarity=0.045 Sum_probs=45.7
Q ss_pred ccceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCCc
Q psy3318 66 RLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGS 126 (139)
Q Consensus 66 r~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFCt 126 (139)
+.+|||++|... ...|.++|.+++.+.|++|+++||+||||||+|.++| .|.
T Consensus 2 ~~mrIAlaQl~~--------~~gD~~~N~~~I~~~I~~A~~~gAdLvVfPEL~lTGY-~~~ 53 (700)
T PLN02339 2 RLLKVATCNLNQ--------WAMDFDGNLKRIKESIAEAKAAGAVYRVGPELEITGY-GCE 53 (700)
T ss_pred ceEEEEEEeCCC--------CCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCccCCC-ChH
Confidence 368999999953 3345889999999999999999999999999999999 773
No 26
>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup belonging to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup either represents a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. XC1258 is a homotetramer.
Probab=98.55 E-value=1.2e-07 Score=75.47 Aligned_cols=47 Identities=17% Similarity=0.271 Sum_probs=41.5
Q ss_pred ceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCC
Q psy3318 68 VRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDR 123 (139)
Q Consensus 68 VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~Pya 123 (139)
+||+++|..+. ..+.+.|++++.++|++|++ ||+||||||+|.+.|.
T Consensus 1 mkia~~Q~~~~--------~~d~~~N~~~~~~~i~~a~~-gadlvvfPE~~l~g~~ 47 (252)
T cd07575 1 LKIALIQTDLV--------WEDPEANLAHFEEKIEQLKE-KTDLIVLPEMFTTGFS 47 (252)
T ss_pred CEEEEEEeecC--------cCCHHHHHHHHHHHHHHhhc-CCCEEEeCCcCcCCCC
Confidence 68999999753 23588999999999999998 9999999999999993
No 27
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=98.54 E-value=1.3e-07 Score=77.62 Aligned_cols=45 Identities=13% Similarity=0.185 Sum_probs=40.7
Q ss_pred eEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCC
Q psy3318 69 RVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPD 122 (139)
Q Consensus 69 rVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~Py 122 (139)
|||++|+.+.. ++++|++++.++|++|++.||+||||||+|.+.|
T Consensus 1 ria~~Q~~~~~---------d~~~Nl~~~~~~i~~A~~~gadlvvfPE~~ltG~ 45 (279)
T cd07579 1 RIAVAQFAPTP---------DIAGNLATIDRLAAEAKATGAELVVFPELALTGL 45 (279)
T ss_pred CEEEEeccCcc---------CHHHHHHHHHHHHHHHHHCCCCEEEeCCccccCC
Confidence 69999996532 5889999999999999999999999999999888
No 28
>PRK02628 nadE NAD synthetase; Reviewed
Probab=98.52 E-value=1.6e-07 Score=86.39 Aligned_cols=56 Identities=16% Similarity=0.124 Sum_probs=47.8
Q ss_pred CCCccceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCCch
Q psy3318 63 RPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGSQ 127 (139)
Q Consensus 63 R~pr~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFCt~ 127 (139)
..-+.+|||++|..+ ...+.++|++++.++|++|+++||+||||||+|.+.| .|..
T Consensus 8 ~~~~~mrIAlaQ~~~--------~~gD~~~Nl~~i~~~i~~A~~~gadLvVfPEL~ltGY-~~~d 63 (679)
T PRK02628 8 YRHGFVRVAAATPKV--------RVADPAFNAARILALARRAADDGVALAVFPELSLSGY-SCDD 63 (679)
T ss_pred hhCCcEEEEEEeCCc--------ccCCHHHHHHHHHHHHHHHHHCCCeEEEcccccccCC-Ccch
Confidence 334679999999964 3346889999999999999999999999999999999 7753
No 29
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=98.49 E-value=2.3e-07 Score=73.49 Aligned_cols=46 Identities=22% Similarity=0.352 Sum_probs=41.1
Q ss_pred eEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCC
Q psy3318 69 RVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPD 122 (139)
Q Consensus 69 rVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~Py 122 (139)
|||++|... ...+.++|++++.++|++|++.||+||||||+|.+.|
T Consensus 1 ria~~q~~~--------~~~d~~~n~~~~~~~i~~a~~~ga~liv~PE~~l~g~ 46 (258)
T cd07584 1 KVALIQMDS--------VLGDVKANLKKAAELCKEAAAEGADLICFPELATTGY 46 (258)
T ss_pred CEEEEEecC--------ccCCHHHHHHHHHHHHHHHHHcCCCEEEcccccccCC
Confidence 699999953 3346899999999999999999999999999999888
No 30
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases). Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic
Probab=98.49 E-value=2.4e-07 Score=76.52 Aligned_cols=53 Identities=15% Similarity=0.297 Sum_probs=43.6
Q ss_pred ceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHh--CCCeEEEccccccCCCCC
Q psy3318 68 VRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGE--SGVNVLCLQEAWRRPDRY 124 (139)
Q Consensus 68 VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~--~GanIICLQElf~~PyaF 124 (139)
|+||++|+.+..- .+..++++|++++.++|++|++ .||+||||||+|.+.|.|
T Consensus 1 ~~Ia~~Q~~~~~~----~~~~d~~~Nl~~~~~~i~~A~~~~~gadLvvfPE~~ltGy~~ 55 (291)
T cd07565 1 VGVAVVQYKVPVL----HTKEEVLENAERIADMVEGTKRGLPGMDLIVFPEYSTQGLMY 55 (291)
T ss_pred CeEEEEecccccc----cccccHHHHHHHHHHHHHHHHhhCCCCeEEEeCCcccccCCC
Confidence 6899999975210 1345799999999999999997 599999999999998844
No 31
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases). These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking
Probab=98.49 E-value=2.7e-07 Score=77.50 Aligned_cols=56 Identities=16% Similarity=0.157 Sum_probs=45.1
Q ss_pred ceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCC
Q psy3318 68 VRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRY 124 (139)
Q Consensus 68 VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaF 124 (139)
.|+++||++..+... ..-..++++|++++.++|++|++.||+||||||+|.+.|.+
T Consensus 1 ~~~~~~~~~~~~~~~-~~~~~~~~~Nl~~i~~~i~~A~~~gadLIVfPE~~ltGy~~ 56 (299)
T cd07567 1 YIAAVVEHHPILSPD-PDALQIMEKNLDIYEEIIKSAAKQGADIIVFPEDGLTGFIF 56 (299)
T ss_pred CEEEEEEEEeeccCC-ccHHHHHHHHHHHHHHHHHHHHHcCCCEEEccccccCCCCC
Confidence 378999998655421 11234569999999999999999999999999999999843
No 32
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases). ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.
Probab=98.43 E-value=3.8e-07 Score=74.09 Aligned_cols=53 Identities=25% Similarity=0.326 Sum_probs=45.1
Q ss_pred ceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCC
Q psy3318 68 VRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPD 122 (139)
Q Consensus 68 VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~Py 122 (139)
+||+++|+.+...+. - ..++.++|++++.++|+.|++.|++||||||++...|
T Consensus 1 ~~ia~~Q~~~~~~~~-~-~~~d~~~nl~~~~~~i~~a~~~ga~lvvfPE~~l~g~ 53 (270)
T cd07571 1 LRVALVQGNIPQDEK-W-DPEQRQATLDRYLDLTRELADEKPDLVVWPETALPFD 53 (270)
T ss_pred CeEEEEeCCCCcccc-c-CHHHHHHHHHHHHHHHhhcccCCCCEEEecCCcCCcc
Confidence 689999998755432 2 2568899999999999999999999999999998766
No 33
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=98.42 E-value=3.7e-07 Score=72.00 Aligned_cols=46 Identities=15% Similarity=0.229 Sum_probs=40.4
Q ss_pred EEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCC
Q psy3318 70 VGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYG 125 (139)
Q Consensus 70 VGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFC 125 (139)
||++|+... .+.++|++++.++|++|++.||+||||||+|.+.| .+
T Consensus 1 ia~~Q~~~~---------~d~~~n~~~~~~~i~~a~~~g~dlivfPE~~l~g~-~~ 46 (255)
T cd07581 1 VALAQFASS---------GDKEENLEKVRRLLAEAAAAGADLVVFPEYTMARF-GD 46 (255)
T ss_pred CEEEEeeCC---------CCHHHHHHHHHHHHHHHHHcCCCEEECcchhcCCC-Cc
Confidence 689999653 35889999999999999999999999999999877 44
No 34
>PRK13981 NAD synthetase; Provisional
Probab=98.40 E-value=4.3e-07 Score=80.79 Aligned_cols=49 Identities=12% Similarity=0.165 Sum_probs=43.7
Q ss_pred ceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCC
Q psy3318 68 VRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYG 125 (139)
Q Consensus 68 VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFC 125 (139)
+||+++|+.. ...+.+.|++++.++|++|+..||+||||||+|.+.| +|
T Consensus 1 mkIAl~Q~~~--------~~gd~~~N~~~i~~~i~~A~~~gadLIVfPEl~ltGy-~~ 49 (540)
T PRK13981 1 LRIALAQLNP--------TVGDIAGNAAKILAAAAEAADAGADLLLFPELFLSGY-PP 49 (540)
T ss_pred CEEEEEeCCC--------CCCCHHHHHHHHHHHHHHHHHCCCCEEECcchhhcCC-Ch
Confidence 6899999953 3456889999999999999999999999999999988 65
No 35
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=98.33 E-value=1.3e-06 Score=71.48 Aligned_cols=52 Identities=19% Similarity=0.078 Sum_probs=44.5
Q ss_pred eEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHh-----CCCeEEEccccccCCCCC
Q psy3318 69 RVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGE-----SGVNVLCLQEAWRRPDRY 124 (139)
Q Consensus 69 rVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~-----~GanIICLQElf~~PyaF 124 (139)
++..+|..+.. +++..++++|++++.++|++|++ +||+||||||+|.+.|.+
T Consensus 2 ~~~~~~~~~~~----~~~~~d~~~Nl~~~~~~i~~A~~~~~~~~gadlivfPE~~ltGy~~ 58 (294)
T cd07582 2 TALALQPTCEA----AEDRADILANIDRINEQIDAAVGFSGPGLPVRLVVLPEYALQGFPM 58 (294)
T ss_pred eeEEEeccccc----ccChhhHHHHHHHHHHHHHHHHHhcccCCCceEEEcCccccccCCc
Confidence 46788887644 45688999999999999999998 489999999999999944
No 36
>PRK13287 amiF formamidase; Provisional
Probab=98.32 E-value=1.4e-06 Score=74.00 Aligned_cols=55 Identities=15% Similarity=0.190 Sum_probs=45.1
Q ss_pred CCccceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhC--CCeEEEccccccCCC
Q psy3318 64 PPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGES--GVNVLCLQEAWRRPD 122 (139)
Q Consensus 64 ~pr~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~--GanIICLQElf~~Py 122 (139)
.+..||||+||+.+... ....+.++|++++.++|+.|++. ||+||||||+|.+.|
T Consensus 10 ~~~~l~VAlvQ~~~~~~----~~~~d~~~Nl~~i~~~i~~A~~~~~gadLVVfPE~~l~G~ 66 (333)
T PRK13287 10 PIEGVLVALIQYPVPVV----ESRADIDKQIEQIIKTVHKTKAGYPGLDLIVFPEYSTQGL 66 (333)
T ss_pred CCCceEEEEEEcccccC----CchhhHHHHHHHHHHHHHHHHhcCCCCcEEEcCCcccccC
Confidence 34569999999975321 12457999999999999999974 999999999999877
No 37
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=98.32 E-value=1.1e-06 Score=68.22 Aligned_cols=47 Identities=19% Similarity=0.290 Sum_probs=41.0
Q ss_pred EEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCC
Q psy3318 70 VGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRY 124 (139)
Q Consensus 70 VGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaF 124 (139)
||++|+.+. ..+.++|++++..+|++|+++|++||||||+|.+.|.+
T Consensus 1 ia~~Q~~~~--------~~~~~~n~~~~~~~i~~a~~~g~dlvvfPE~~l~g~~~ 47 (253)
T cd07197 1 IAAVQLAPK--------IGDVEANLAKALRLIKEAAEQGADLIVLPELFLTGYSF 47 (253)
T ss_pred CEEEEccCC--------CCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccccCCcc
Confidence 689999653 24688999999999999999999999999999988844
No 38
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=98.31 E-value=9.3e-07 Score=70.36 Aligned_cols=46 Identities=22% Similarity=0.316 Sum_probs=39.2
Q ss_pred eEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCC
Q psy3318 69 RVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYG 125 (139)
Q Consensus 69 rVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFC 125 (139)
|||++|+.. ...|+++|++++.++|+.|+ |+||||||+|.+.|.|.
T Consensus 1 kia~~Q~~~--------~~~d~~~N~~~~~~~i~~a~---adlvvfPE~~l~gy~~~ 46 (259)
T cd07577 1 KVGYVQFNP--------KFGEVEKNLKKVESLIKGVE---ADLIVLPELFNTGYAFT 46 (259)
T ss_pred CEEEEEccC--------ccCCHHHHHHHHHHHHHHhC---CCEEEcccccccCCCcC
Confidence 699999963 23468899999999999884 99999999999999554
No 39
>PRK13286 amiE acylamide amidohydrolase; Provisional
Probab=98.17 E-value=5.1e-06 Score=71.22 Aligned_cols=58 Identities=12% Similarity=0.162 Sum_probs=46.5
Q ss_pred CccceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHH--hCCCeEEEccccccCCCCCCc
Q psy3318 65 PRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAG--ESGVNVLCLQEAWRRPDRYGS 126 (139)
Q Consensus 65 pr~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA--~~GanIICLQElf~~PyaFCt 126 (139)
+..|+||+||...... -...+..+|++++.++|+.|+ ..|++||||||+|.+.|.|+.
T Consensus 10 ~~~l~va~vQ~~~p~~----~~~~di~~Nl~~i~~~i~~a~~~~~gadLVVfPE~~l~G~~y~~ 69 (345)
T PRK13286 10 NDTVGVAVVNYKMPRL----HTKAEVLENARKIADMIVGMKQGLPGMDLVIFPEYSTHGIMYDR 69 (345)
T ss_pred CCceEEEEEEcCCCcc----CCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEcCCccccCCCcCh
Confidence 4469999999964322 123689999999999999987 459999999999999876654
No 40
>KOG0806|consensus
Probab=98.14 E-value=4.4e-06 Score=71.62 Aligned_cols=53 Identities=11% Similarity=0.078 Sum_probs=46.5
Q ss_pred CCccceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCC
Q psy3318 64 PPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRY 124 (139)
Q Consensus 64 ~pr~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaF 124 (139)
.....++|+||..... ..+.+|+++.+..|++|++.||+||+|||.|+.||.|
T Consensus 10 ~~~~~~~a~vq~~~~l--------~~~~~Ni~~~~~~i~~aa~~g~~iIv~PE~~~~gy~~ 62 (298)
T KOG0806|consen 10 ILPNATEALVSLEEAL--------LLMNENIDILEKAVKEAAKQGAKIIVFPEDGLYGYNF 62 (298)
T ss_pred cccccceeeeecccch--------hhhhhhHHHHHHHHHHHHhcCCeEEEChhhccccccc
Confidence 3445799999996544 3588999999999999999999999999999999977
No 41
>KOG0805|consensus
Probab=97.89 E-value=2.1e-05 Score=67.34 Aligned_cols=51 Identities=29% Similarity=0.388 Sum_probs=44.1
Q ss_pred CCccceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCC
Q psy3318 64 PPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPD 122 (139)
Q Consensus 64 ~pr~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~Py 122 (139)
++.++||+++|.+.+.. +..+.++|+++++.+||..||++|+|||+|-..|
T Consensus 14 ~~s~~~v~ivQ~~t~~~--------dtpaTL~K~~~~~~Eaa~~Ga~LV~fPEAfiGGY 64 (337)
T KOG0805|consen 14 SSSIVRVTIVQASTVYN--------DTPATLDKAEKYIVEAASKGAELVLFPEAFIGGY 64 (337)
T ss_pred cccceEEEEEEcccCCC--------CCHHHHHHHHHHHHHHhcCCceEEEeehHhccCC
Confidence 45679999999986443 2448999999999999999999999999998877
No 42
>KOG0807|consensus
Probab=97.84 E-value=2.1e-05 Score=66.88 Aligned_cols=45 Identities=27% Similarity=0.406 Sum_probs=40.1
Q ss_pred cceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccC
Q psy3318 67 LVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRR 120 (139)
Q Consensus 67 ~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~ 120 (139)
..+||+.|+.... ++.+|++.++++|++|+.+||.+|||||+|..
T Consensus 15 ~~~vAv~Qm~S~~---------Dl~kNl~~~keLi~eA~~k~A~~iflPE~~dF 59 (295)
T KOG0807|consen 15 LKRVAVAQMTSSN---------DLTKNLATCKELISEAAQKGAKLIFLPEAFDF 59 (295)
T ss_pred cceeEEEeeccch---------HHHHHHHHHHHHHHHHHHcCCCEEEcchhhhh
Confidence 3789999997644 47799999999999999999999999999864
No 43
>TIGR00546 lnt apolipoprotein N-acyltransferase. This enzyme transfers the acyl group to lipoproteins in the lgt/lsp/lnt system which is found broadly in bacteria but not in archaea. This model represents one component of the "lipoprotein lgt/lsp/lnt system" genome property.
Probab=97.14 E-value=0.00072 Score=57.70 Aligned_cols=54 Identities=17% Similarity=0.098 Sum_probs=42.3
Q ss_pred ccceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCC
Q psy3318 66 RLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPD 122 (139)
Q Consensus 66 r~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~Py 122 (139)
..+||++||..+.... .--.++.++|+++..+++++|++ |+++||+||.+...|
T Consensus 158 ~~~~ValvQ~n~~~~~--k~~~~~~~~~~~~~~~~~~~a~~-~~dlVv~PE~a~~~~ 211 (391)
T TIGR00546 158 PTLNVALVQPNIPQDL--KFDSEGLEAILEILTSLTKQAVE-KPDLVVWPETAFPFD 211 (391)
T ss_pred CcceEEEEcCCCCccc--ccChhhHHHHHHHHHHHHhccCC-CCCEEEcCccccccc
Confidence 3589999999874321 11234678899999999999988 999999999987655
No 44
>PRK12291 apolipoprotein N-acyltransferase; Reviewed
Probab=97.03 E-value=0.0012 Score=57.89 Aligned_cols=58 Identities=14% Similarity=0.074 Sum_probs=44.1
Q ss_pred ceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCCchhh
Q psy3318 68 VRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGSQVY 129 (139)
Q Consensus 68 VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFCt~Ed 129 (139)
++|++||..+..+.. =-.++.++++++..+++++|+..|+++||+||.+. |+ |.+..+
T Consensus 195 ~~V~lVQ~ni~q~~K--w~~~~~~~~l~~~~~l~~~a~~~~~dLVVwPEta~-p~-~~~~~~ 252 (418)
T PRK12291 195 VNIELVNTNIPQDLK--WDKENLKSIINENLKEIDKAIDEKKDLIVLPETAF-PL-ALNNSP 252 (418)
T ss_pred CEEEEEeCCCCcccc--cChhhHHHHHHHHHHHHHHHhccCCCEEEeCCccc-cc-chhhCH
Confidence 589999998754321 11245678999999999999999999999999874 66 555443
No 45
>PRK00302 lnt apolipoprotein N-acyltransferase; Reviewed
Probab=96.98 E-value=0.0013 Score=58.16 Aligned_cols=54 Identities=19% Similarity=0.143 Sum_probs=41.0
Q ss_pred cceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCC
Q psy3318 67 LVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYG 125 (139)
Q Consensus 67 ~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFC 125 (139)
.+||++||..+.... ..-..+.++|++++.++++ ++..|+++||+||.+. || ++
T Consensus 219 ~~~ValvQ~ni~~~~--k~~~~~~~~~l~~~~~~~~-~~~~~~dlvV~PE~a~-p~-~~ 272 (505)
T PRK00302 219 ALKVALVQGNIPQSL--KWDPAGLEATLQKYLDLSR-PALGPADLIIWPETAI-PF-LL 272 (505)
T ss_pred CcEEEEECCCCChhc--ccCHHHHHHHHHHHHHHHh-cccCCCCEEEeCCccc-cc-cc
Confidence 489999999874421 1112567889999999999 5567999999999876 77 54
No 46
>PRK13825 conjugal transfer protein TraB; Provisional
Probab=89.80 E-value=0.35 Score=42.52 Aligned_cols=31 Identities=19% Similarity=0.112 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEccccccCCC
Q psy3318 92 ATYDRVEKLINAAGESGVNVLCLQEAWRRPD 122 (139)
Q Consensus 92 anl~k~~~lI~~AA~~GanIICLQElf~~Py 122 (139)
++++...+.|+.|++.|+++|||||.+...|
T Consensus 206 ~~~~~~~~~v~~A~~~g~dlIVlPEta~~~~ 236 (388)
T PRK13825 206 ERRRELIATVRAAAAAGARVVVLPESALGFW 236 (388)
T ss_pred HHHHHHHHHHHhhcccCCCEEEccCcccccc
Confidence 5666777889999999999999999999776
No 47
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=80.63 E-value=1.4 Score=32.25 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhCCCeEEEccccccC
Q psy3318 96 RVEKLINAAGESGVNVLCLQEAWRR 120 (139)
Q Consensus 96 k~~~lI~~AA~~GanIICLQElf~~ 120 (139)
+...+.+.-...+++||||||.+..
T Consensus 17 ~~~~i~~~i~~~~~Dii~LQEv~~~ 41 (249)
T PF03372_consen 17 KRREIAQWIAELDPDIIALQEVRND 41 (249)
T ss_dssp HHHHHHHHHHHHT-SEEEEEEEESH
T ss_pred HHHHHHHHHHhcCCCEEEEecchhh
Confidence 3334555555667999999999964
No 48
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=73.58 E-value=2.7 Score=35.02 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhCCCeEEEcccccc
Q psy3318 96 RVEKLINAAGESGVNVLCLQEAWR 119 (139)
Q Consensus 96 k~~~lI~~AA~~GanIICLQElf~ 119 (139)
|...+.+.-...+.+||||||+|.
T Consensus 24 R~~~i~~~~~~~~~DVV~LQEv~~ 47 (283)
T TIGR03395 24 RADLIASADYIKNQDVVILNEAFD 47 (283)
T ss_pred HHHHHHHhhcccCCCEEEEecccc
Confidence 333333333566999999999985
No 49
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=72.03 E-value=3.7 Score=36.45 Aligned_cols=25 Identities=32% Similarity=0.555 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEccc
Q psy3318 92 ATYDRVEKLINAAGESGVNVLCLQE 116 (139)
Q Consensus 92 anl~k~~~lI~~AA~~GanIICLQE 116 (139)
.-++++.++|++|+.+||++|=||=
T Consensus 27 G~le~A~~lIdaAk~aGADavKfQt 51 (347)
T COG2089 27 GDLERAKELIDAAKEAGADAVKFQT 51 (347)
T ss_pred CcHHHHHHHHHHHHHcCcceeeeec
Confidence 4589999999999999999999884
No 50
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=70.73 E-value=24 Score=29.11 Aligned_cols=72 Identities=17% Similarity=0.163 Sum_probs=45.7
Q ss_pred cCCeeeeeeeccCCCCCCCCCc---cceEEEEecccCCCCCCCCchhhHHHH----HHHHHHHHHHHHhCCCeEEEcccc
Q psy3318 45 SNEFNVVGYKFGAKPESSRPPR---LVRVGIIQNHIGNSTVSCNVPQERSAT----YDRVEKLINAAGESGVNVLCLQEA 117 (139)
Q Consensus 45 ~~~Fel~~y~f~a~~EqlR~pr---~VrVGLIQ~si~~~t~~apv~~qk~an----l~k~~~lI~~AA~~GanIICLQEl 117 (139)
+..+=+.|+.|+-....-+.|+ ..||++++.++..+.+ ..-..+.++. -+.+..+++.=+..|+|||+.+--
T Consensus 61 ~dS~li~Gvvi~k~~~~~~m~~~i~n~kIlll~~~Le~~~~-~~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~ 139 (261)
T cd03334 61 SDSEVVDGVVFTKNVAHKRMPSKIKNPRILLLQGPLEYQRV-ENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKS 139 (261)
T ss_pred HHcEEEeeEEEeCCCCCccCCcccCCCcEEEEeeeeccccc-cCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCc
Confidence 5566788999975533323333 4689999998866532 1112233333 456667777778899999887643
No 51
>PRK11756 exonuclease III; Provisional
Probab=68.71 E-value=5.4 Score=31.98 Aligned_cols=24 Identities=25% Similarity=0.309 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHhCCCeEEEccccccC
Q psy3318 94 YDRVEKLINAAGESGVNVLCLQEAWRR 120 (139)
Q Consensus 94 l~k~~~lI~~AA~~GanIICLQElf~~ 120 (139)
++++.++|+ +..++||||||.+..
T Consensus 15 ~~~i~~~i~---~~~pDIi~LQE~~~~ 38 (268)
T PRK11756 15 PHQLEAIIE---KHQPDVIGLQETKVH 38 (268)
T ss_pred HHHHHHHHH---hcCCCEEEEEecccc
Confidence 445555554 567999999998644
No 52
>KOG0358|consensus
Probab=66.93 E-value=14 Score=34.03 Aligned_cols=47 Identities=19% Similarity=0.373 Sum_probs=32.2
Q ss_pred ceEEEEecccCCCCCCCCchh--------hHH----HHHHHHHHHHHHHHhCCCeEEEccc
Q psy3318 68 VRVGIIQNHIGNSTVSCNVPQ--------ERS----ATYDRVEKLINAAGESGVNVLCLQE 116 (139)
Q Consensus 68 VrVGLIQ~si~~~t~~apv~~--------qk~----anl~k~~~lI~~AA~~GanIICLQE 116 (139)
-|||+||..++.|.+ ...+ |-+ +--+.+..|+++-.+.|+|+++.|-
T Consensus 239 AkIglIQF~iS~PKt--dmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQK 297 (534)
T KOG0358|consen 239 AKIGLIQFQISPPKT--DMENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQK 297 (534)
T ss_pred ceeeEEEEEecCCCC--CcccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeH
Confidence 589999999877754 1111 111 2223456788889999999998873
No 53
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=62.97 E-value=5.7 Score=30.85 Aligned_cols=21 Identities=33% Similarity=0.403 Sum_probs=17.5
Q ss_pred HHHHHhCCCeEEEccccccCC
Q psy3318 101 INAAGESGVNVLCLQEAWRRP 121 (139)
Q Consensus 101 I~~AA~~GanIICLQElf~~P 121 (139)
++......++||||||....+
T Consensus 20 ~~~l~~~~~DIv~LQE~~~~~ 40 (255)
T TIGR00633 20 LDWLKEEQPDVLCLQETKVAD 40 (255)
T ss_pred HHHHHhcCCCEEEEEeccCch
Confidence 666677899999999998765
No 54
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=58.29 E-value=7.8 Score=30.73 Aligned_cols=22 Identities=32% Similarity=0.323 Sum_probs=16.6
Q ss_pred HHHHHHhCCCeEEEccccccCC
Q psy3318 100 LINAAGESGVNVLCLQEAWRRP 121 (139)
Q Consensus 100 lI~~AA~~GanIICLQElf~~P 121 (139)
+++.--...++||||||....+
T Consensus 18 ~~~~l~~~~~DIi~LQE~~~~~ 39 (254)
T TIGR00195 18 GLAWLKENQPDVLCLQETKVQD 39 (254)
T ss_pred HHHHHHhcCCCEEEEEecccch
Confidence 3444456789999999997765
No 55
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=56.22 E-value=7.9 Score=33.61 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEcc
Q psy3318 92 ATYDRVEKLINAAGESGVNVLCLQ 115 (139)
Q Consensus 92 anl~k~~~lI~~AA~~GanIICLQ 115 (139)
..++++.+||++|+++||+.|=||
T Consensus 13 Gdl~~A~~lI~~A~~aGadaVKfQ 36 (329)
T TIGR03569 13 GSLELAKKLVDAAAEAGADAVKFQ 36 (329)
T ss_pred CcHHHHHHHHHHHHHhCCCEEEee
Confidence 568999999999999999999998
No 56
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=53.35 E-value=10 Score=31.17 Aligned_cols=26 Identities=15% Similarity=0.373 Sum_probs=19.4
Q ss_pred HHHHHHHhCCCeEEEccccccCCCCC
Q psy3318 99 KLINAAGESGVNVLCLQEAWRRPDRY 124 (139)
Q Consensus 99 ~lI~~AA~~GanIICLQElf~~PyaF 124 (139)
.+.+--....++||||||.......|
T Consensus 18 ~~~~~l~~~~~DIiclQEtK~~~~~~ 43 (250)
T PRK13911 18 GFMDFFNSVDADVFCIQESKMQQEQN 43 (250)
T ss_pred hHHHHHHhcCCCEEEEEeeccccccc
Confidence 35555567899999999998766543
No 57
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=48.78 E-value=12 Score=31.74 Aligned_cols=28 Identities=29% Similarity=0.482 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHHHHHhCCCeEEEcccccc
Q psy3318 89 ERSATYDRVEKLINAAGESGVNVLCLQEAWR 119 (139)
Q Consensus 89 qk~anl~k~~~lI~~AA~~GanIICLQElf~ 119 (139)
++.-+.+++.+.|. ..|++||||||+=.
T Consensus 25 d~r~~~~r~~~~i~---~~~~Div~LQEv~~ 52 (259)
T COG3568 25 DRRFDLPRIAEVIR---EVGADIVALQEVDG 52 (259)
T ss_pred CceecHHHHHHHHH---hhccCeeeeecccc
Confidence 46667776666664 45699999999864
No 58
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=48.68 E-value=63 Score=27.32 Aligned_cols=51 Identities=18% Similarity=0.185 Sum_probs=42.2
Q ss_pred eEEEEecccCCCCCCCCc-hhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCC
Q psy3318 69 RVGIIQNHIGNSTVSCNV-PQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPD 122 (139)
Q Consensus 69 rVGLIQ~si~~~t~~apv-~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~Py 122 (139)
=||+|+.. ++|.+ |- ....+++++++.+=++.-.+.|++=|.++=.|.+||
T Consensus 4 vIGmvHl~-pLPGs--P~~~~~~~~i~e~A~~ea~~l~~~GvD~viveN~~d~P~ 55 (257)
T TIGR00259 4 VIGMVHLL-PLPGS--PSFDDNLNAVIDKAWKDAMALEEGGVDAVMFENFFDAPF 55 (257)
T ss_pred EEEEEcCC-CCCCC--CCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCCCC
Confidence 38999886 34432 43 557889999999999999999999999999999999
No 59
>TIGR03586 PseI pseudaminic acid synthase.
Probab=48.33 E-value=18 Score=31.41 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEcc
Q psy3318 92 ATYDRVEKLINAAGESGVNVLCLQ 115 (139)
Q Consensus 92 anl~k~~~lI~~AA~~GanIICLQ 115 (139)
..++.+.++|+.|+++||+.|=||
T Consensus 14 G~~~~A~~lI~~A~~aGAdavKFQ 37 (327)
T TIGR03586 14 GSLERALAMIEAAKAAGADAIKLQ 37 (327)
T ss_pred ChHHHHHHHHHHHHHhCCCEEEee
Confidence 468899999999999999998888
No 60
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=47.06 E-value=34 Score=28.67 Aligned_cols=34 Identities=21% Similarity=0.381 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEEccccccCCCC
Q psy3318 90 RSATYDRVEKLINAAGESGVNVLCLQEAWRRPDR 123 (139)
Q Consensus 90 k~anl~k~~~lI~~AA~~GanIICLQElf~~Pya 123 (139)
++..++++.++|+.|...|..+.+-.|-|.+||+
T Consensus 110 ~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~r 143 (280)
T cd07945 110 PEEHFADIREVIEYAIKNGIEVNIYLEDWSNGMR 143 (280)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCCc
Confidence 6788999999999999999999888899999983
No 61
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=45.86 E-value=24 Score=30.08 Aligned_cols=30 Identities=23% Similarity=0.478 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhCCCeEEEccccccCCCCCCc
Q psy3318 94 YDRVEKLINAAGESGVNVLCLQEAWRRPDRYGS 126 (139)
Q Consensus 94 l~k~~~lI~~AA~~GanIICLQElf~~PyaFCt 126 (139)
+++..++++ +...+||||||+=.-.-.|.+
T Consensus 15 ~~~~~~~l~---~~~pDVlclQEtK~~~~~fp~ 44 (261)
T COG0708 15 LKKLLDWLE---EEQPDVLCLQETKAQDEQFPR 44 (261)
T ss_pred HHHHHHHHH---HhCCCEEEEEecccCcccCCH
Confidence 344444554 456699999998665555544
No 62
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=45.74 E-value=74 Score=26.82 Aligned_cols=51 Identities=14% Similarity=0.129 Sum_probs=41.9
Q ss_pred eEEEEecccCCCCCCCCc-hhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCC
Q psy3318 69 RVGIIQNHIGNSTVSCNV-PQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPD 122 (139)
Q Consensus 69 rVGLIQ~si~~~t~~apv-~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~Py 122 (139)
=||+|+... +|- .|- ..+.+++++++.+=++.-.+.|++=|.++=.|..||
T Consensus 5 iIGmvHL~p-LPG--sp~~~~~~~~iie~A~~ea~~l~~~GvDgiiveN~~D~Py 56 (254)
T PF03437_consen 5 IIGMVHLPP-LPG--SPRYDGSMEEIIERAVREAEALEEGGVDGIIVENMGDVPY 56 (254)
T ss_pred EEEEEcCCC-CCc--CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEecCCCCCc
Confidence 489999863 332 233 237899999999999999999999999999999999
No 63
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=45.16 E-value=35 Score=27.10 Aligned_cols=30 Identities=13% Similarity=0.182 Sum_probs=26.3
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCeEEEccc
Q psy3318 87 PQERSATYDRVEKLINAAGESGVNVLCLQE 116 (139)
Q Consensus 87 ~~qk~anl~k~~~lI~~AA~~GanIICLQE 116 (139)
.+.+++.++.+...|+.|+..||+.|++.-
T Consensus 82 ~~~r~~~~~~~~~~i~~a~~lGa~~i~~~~ 111 (275)
T PRK09856 82 EHMRRESLDMIKLAMDMAKEMNAGYTLISA 111 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 457888999999999999999999988743
No 64
>KOG2303|consensus
Probab=41.49 E-value=38 Score=32.29 Aligned_cols=51 Identities=18% Similarity=-0.042 Sum_probs=42.6
Q ss_pred CccceEEEEec-ccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCC
Q psy3318 65 PRLVRVGIIQN-HIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYG 125 (139)
Q Consensus 65 pr~VrVGLIQ~-si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFC 125 (139)
.|.|+||..+. .+.++.+ .|++|+.+-|++|+..||.+=+=|||=-+.| =|
T Consensus 2 ~r~vtvAtc~lNqWAlDFe---------gN~~rI~~Si~eAk~~gA~~RlGPELEi~GY-gC 53 (706)
T KOG2303|consen 2 GRKVTVATCTLNQWALDFE---------GNMQRILKSIEEAKARGARYRLGPELEITGY-GC 53 (706)
T ss_pred CceEEEEEechhhhhhhcc---------ccHHHHHHHHHHHHhcCCeeecCCceeecCC-Ch
Confidence 36688888775 3555544 8999999999999999999999999999999 44
No 65
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=40.58 E-value=50 Score=26.55 Aligned_cols=29 Identities=24% Similarity=0.324 Sum_probs=26.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCeEEEcc
Q psy3318 87 PQERSATYDRVEKLINAAGESGVNVLCLQ 115 (139)
Q Consensus 87 ~~qk~anl~k~~~lI~~AA~~GanIICLQ 115 (139)
.+.+++.++.....|+.|+..|++.|+++
T Consensus 86 ~~~r~~~~~~~~~~i~~a~~lG~~~v~~~ 114 (279)
T TIGR00542 86 KAVRQQGLEIMEKAIQLARDLGIRTIQLA 114 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEec
Confidence 45788889999999999999999999985
No 66
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=40.54 E-value=24 Score=33.29 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhCCCeEEEcccc
Q psy3318 96 RVEKLINAAGESGVNVLCLQEA 117 (139)
Q Consensus 96 k~~~lI~~AA~~GanIICLQEl 117 (139)
|-..++++-....++||||||+
T Consensus 286 Rk~lIl~EI~~~~aDIICLQEV 307 (606)
T PLN03144 286 RRQNLLREIVGYRADILCLQEV 307 (606)
T ss_pred HHHHHHHHHHhcCCCEEEEeec
Confidence 3345666666789999999998
No 67
>COG0815 Lnt Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=40.16 E-value=36 Score=31.27 Aligned_cols=53 Identities=9% Similarity=-0.028 Sum_probs=32.4
Q ss_pred ccceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHH--hCCCeEEEccccccC
Q psy3318 66 RLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAG--ESGVNVLCLQEAWRR 120 (139)
Q Consensus 66 r~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA--~~GanIICLQElf~~ 120 (139)
+.++|++||-.+..+.. =..++...+.......+..|. ...+++|+.||.--.
T Consensus 226 ~~~~V~lvQ~nI~q~lk--~~~~~~~~~~~~~~~~~~~~~~~~~~~dlVIwPEtA~p 280 (518)
T COG0815 226 PTLTVALVQGNIPQDLK--WDADALARLIAGYLEEEFLAAVDKQKPDLVVWPETALP 280 (518)
T ss_pred CceEEEEecCCCccccc--CCHHHHHHHHHhhhhccccccccCCCCCEEEccccccc
Confidence 35899999997753322 112333334444444444444 489999999998763
No 68
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=37.28 E-value=62 Score=25.86 Aligned_cols=30 Identities=23% Similarity=0.312 Sum_probs=26.1
Q ss_pred chhhHHHHHHHHHHHHHHHHhCCCeEEEcc
Q psy3318 86 VPQERSATYDRVEKLINAAGESGVNVLCLQ 115 (139)
Q Consensus 86 v~~qk~anl~k~~~lI~~AA~~GanIICLQ 115 (139)
-...+++.++++...|+.|+..|+..|++.
T Consensus 90 ~~~~r~~~~~~~~~~i~~a~~lG~~~i~~~ 119 (283)
T PRK13209 90 DDAVRAQALEIMRKAIQLAQDLGIRVIQLA 119 (283)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEC
Confidence 345688889999999999999999999874
No 69
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=36.30 E-value=66 Score=25.52 Aligned_cols=29 Identities=24% Similarity=0.422 Sum_probs=25.4
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCeEEEcc
Q psy3318 87 PQERSATYDRVEKLINAAGESGVNVLCLQ 115 (139)
Q Consensus 87 ~~qk~anl~k~~~lI~~AA~~GanIICLQ 115 (139)
.+.+++.++.....|+.|+..||+.|+++
T Consensus 86 ~~~r~~~~~~~~~~i~~a~~lG~~~v~~~ 114 (284)
T PRK13210 86 PATRERALEIMKKAIRLAQDLGIRTIQLA 114 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEC
Confidence 45677889999999999999999999874
No 70
>PRK01060 endonuclease IV; Provisional
Probab=35.57 E-value=87 Score=24.99 Aligned_cols=30 Identities=13% Similarity=0.118 Sum_probs=22.3
Q ss_pred CchhhHHHHHHHHHHHHHHHHhCCCeEEEc
Q psy3318 85 NVPQERSATYDRVEKLINAAGESGVNVLCL 114 (139)
Q Consensus 85 pv~~qk~anl~k~~~lI~~AA~~GanIICL 114 (139)
|-.+.+++.+++..+.|+.|.+.||..|++
T Consensus 79 ~d~~~r~~s~~~~~~~i~~A~~lga~~vv~ 108 (281)
T PRK01060 79 PNKEILEKSRDFLIQEIERCAALGAKLLVF 108 (281)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 344667777888888888888888877665
No 71
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=35.45 E-value=24 Score=29.78 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=19.9
Q ss_pred HHHHHHhCCCeEEEccccccCCCCCCc
Q psy3318 100 LINAAGESGVNVLCLQEAWRRPDRYGS 126 (139)
Q Consensus 100 lI~~AA~~GanIICLQElf~~PyaFCt 126 (139)
-|+.|++.||+.| |+++.||+=+.
T Consensus 136 qi~~A~~~GAd~V---ELhTG~Ya~a~ 159 (234)
T cd00003 136 QIEAAKEVGADRV---ELHTGPYANAY 159 (234)
T ss_pred HHHHHHHhCcCEE---EEechhhhcCC
Confidence 5778889999988 99999996543
No 72
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=34.73 E-value=71 Score=25.37 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=24.9
Q ss_pred chhhHHHHHHHHHHHHHHHHhCCCeEEEc
Q psy3318 86 VPQERSATYDRVEKLINAAGESGVNVLCL 114 (139)
Q Consensus 86 v~~qk~anl~k~~~lI~~AA~~GanIICL 114 (139)
-.+.+++.++...+.|+.|+..||..|++
T Consensus 75 d~~~r~~~~~~l~~~i~~A~~lGa~~vv~ 103 (273)
T smart00518 75 DKEKVEKSIERLIDEIKRCEELGIKALVF 103 (273)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 34568888999999999999999998875
No 73
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=34.66 E-value=40 Score=30.09 Aligned_cols=46 Identities=26% Similarity=0.287 Sum_probs=25.7
Q ss_pred CCCccceEEEEecccCCCCCC----CCchhhHHHHHHHHHHHHHHHHhCCCeEE
Q psy3318 63 RPPRLVRVGIIQNHIGNSTVS----CNVPQERSATYDRVEKLINAAGESGVNVL 112 (139)
Q Consensus 63 R~pr~VrVGLIQ~si~~~t~~----apv~~qk~anl~k~~~lI~~AA~~GanII 112 (139)
|+.|.|+||=++..-..|-.- ..-+.|.++.++ -|.+-++.|++||
T Consensus 2 r~tr~V~VG~v~IGG~~PI~VQSMtnt~T~Dv~atv~----QI~~L~~aGceiV 51 (346)
T TIGR00612 2 RKTRSVRVGAVPVGGDAPIVVQSMTNTDTIDIDSTVA----QIRALEEAGCDIV 51 (346)
T ss_pred CcceEEEEcCEeECCCCcEEEEecCCCCchhHHHHHH----HHHHHHHcCCCEE
Confidence 566778888766543221000 011334555554 5566668999997
No 74
>PRK05421 hypothetical protein; Provisional
Probab=34.21 E-value=35 Score=27.72 Aligned_cols=14 Identities=29% Similarity=0.325 Sum_probs=12.3
Q ss_pred hCCCeEEEcccccc
Q psy3318 106 ESGVNVLCLQEAWR 119 (139)
Q Consensus 106 ~~GanIICLQElf~ 119 (139)
..+++||||||...
T Consensus 67 ~~~~DiI~LQEv~~ 80 (263)
T PRK05421 67 GKDADLVLLQEAQT 80 (263)
T ss_pred ccCCCEEEEEeccc
Confidence 77899999999864
No 75
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=34.00 E-value=26 Score=29.59 Aligned_cols=59 Identities=17% Similarity=0.173 Sum_probs=36.8
Q ss_pred cCCeeeeeeeccC--CCCCCCCCccceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCC
Q psy3318 45 SNEFNVVGYKFGA--KPESSRPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPD 122 (139)
Q Consensus 45 ~~~Fel~~y~f~a--~~EqlR~pr~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~Py 122 (139)
+++|++.+..=.- .-+.|+... ++|.|.= +++ .+-|+.|++.||+.| |+++.||
T Consensus 100 egGldv~~~~~~l~~~i~~l~~~g-I~VSLFi-----DP~---------------~~qi~~A~~~GAd~V---ELhTG~Y 155 (237)
T TIGR00559 100 EGGLDVARLKDKLCELVKRFHAAG-IEVSLFI-----DAD---------------KDQISAAAEVGADRI---EIHTGPY 155 (237)
T ss_pred CcCchhhhCHHHHHHHHHHHHHCC-CEEEEEe-----CCC---------------HHHHHHHHHhCcCEE---EEechhh
Confidence 7777776543211 133444444 6777762 222 135788899999998 9999999
Q ss_pred CCCch
Q psy3318 123 RYGSQ 127 (139)
Q Consensus 123 aFCt~ 127 (139)
|=+..
T Consensus 156 A~a~~ 160 (237)
T TIGR00559 156 ANAYN 160 (237)
T ss_pred hcCCC
Confidence 75543
No 76
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=33.95 E-value=32 Score=29.33 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=21.6
Q ss_pred HHHHHHhCCCeEEEccccccCCCCCCch
Q psy3318 100 LINAAGESGVNVLCLQEAWRRPDRYGSQ 127 (139)
Q Consensus 100 lI~~AA~~GanIICLQElf~~PyaFCt~ 127 (139)
-|+.|+.-||+.| |++++||+=|..
T Consensus 137 qi~aa~~~gA~~I---ELhTG~Ya~~~~ 161 (243)
T COG0854 137 QIEAAAEVGAPRI---ELHTGPYADAHD 161 (243)
T ss_pred HHHHHHHhCCCEE---EEecccccccCC
Confidence 4677888899988 999999988876
No 77
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=33.85 E-value=2e+02 Score=25.99 Aligned_cols=74 Identities=18% Similarity=0.259 Sum_probs=46.4
Q ss_pred cCCeeeeeeeccCCCCC---C-CCCccceEEEEecccCCCCC--CCCch----hhHHHH----HHHHHHHHHHHHhCCCe
Q psy3318 45 SNEFNVVGYKFGAKPES---S-RPPRLVRVGIIQNHIGNSTV--SCNVP----QERSAT----YDRVEKLINAAGESGVN 110 (139)
Q Consensus 45 ~~~Fel~~y~f~a~~Eq---l-R~pr~VrVGLIQ~si~~~t~--~apv~----~qk~an----l~k~~~lI~~AA~~Gan 110 (139)
..-+=+.|+.|+-..-. + +.....||++++..+..+.. ..++. ++.+.. .+...++++...+.|++
T Consensus 196 ~ds~li~Givl~k~~~~~~~mpk~i~n~kI~ll~~~Le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~ 275 (517)
T TIGR02342 196 DDTELIEGLVFTQKASRSAGGPTRIEKAKIGLIQFQISPPKTDMENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCN 275 (517)
T ss_pred hhcEEEeeEEEeccccccCCCCccccCCcEEEEecCCCCCcccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 55566689998755322 1 12234689999987754321 02221 222333 46677889999999999
Q ss_pred EEEccccc
Q psy3318 111 VLCLQEAW 118 (139)
Q Consensus 111 IICLQElf 118 (139)
+|+.++-.
T Consensus 276 lvi~~~~I 283 (517)
T TIGR02342 276 VLLIQKSI 283 (517)
T ss_pred EEEECCCc
Confidence 99988754
No 78
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=32.59 E-value=85 Score=24.16 Aligned_cols=35 Identities=17% Similarity=0.173 Sum_probs=21.7
Q ss_pred eEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEc
Q psy3318 69 RVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCL 114 (139)
Q Consensus 69 rVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICL 114 (139)
+||+|+.+...| -...-...+.++|.+.|.++++.
T Consensus 1 ~~g~~~~~~~~~-----------~~~~~~~~~~~~a~~~g~~~~~~ 35 (273)
T cd06309 1 TVGFSQVGAESP-----------WRTAETKSIKDAAEKRGFDLKFA 35 (273)
T ss_pred CeeeccCCCCCH-----------HHHHHHHHHHHHHHhcCCEEEEe
Confidence 478888875332 12334445666666778888764
No 79
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=32.39 E-value=29 Score=29.38 Aligned_cols=57 Identities=21% Similarity=0.213 Sum_probs=36.0
Q ss_pred cCCeeeeeeeccCC--CCCCCCCccceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCC
Q psy3318 45 SNEFNVVGYKFGAK--PESSRPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPD 122 (139)
Q Consensus 45 ~~~Fel~~y~f~a~--~EqlR~pr~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~Py 122 (139)
+++|++.+..=.-. -+.|+... +||.|.=. ++ . +-|+.|++.||+.| |+++.||
T Consensus 103 egGldv~~~~~~l~~~i~~L~~~g-IrVSLFid-----P~-----------~----~qi~~A~~~GAd~V---ELhTG~y 158 (239)
T PRK05265 103 EGGLDVAGQFDKLKPAIARLKDAG-IRVSLFID-----PD-----------P----EQIEAAAEVGADRI---ELHTGPY 158 (239)
T ss_pred CccchhhcCHHHHHHHHHHHHHCC-CEEEEEeC-----CC-----------H----HHHHHHHHhCcCEE---EEechhh
Confidence 77777765432111 34444444 56666542 22 1 25778889999988 9999999
Q ss_pred CCC
Q psy3318 123 RYG 125 (139)
Q Consensus 123 aFC 125 (139)
+=+
T Consensus 159 A~a 161 (239)
T PRK05265 159 ADA 161 (239)
T ss_pred hcC
Confidence 655
No 80
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=32.35 E-value=43 Score=29.97 Aligned_cols=47 Identities=21% Similarity=0.232 Sum_probs=26.1
Q ss_pred CCCCccceEEEEecccCCCCCC----CCchhhHHHHHHHHHHHHHHHHhCCCeEE
Q psy3318 62 SRPPRLVRVGIIQNHIGNSTVS----CNVPQERSATYDRVEKLINAAGESGVNVL 112 (139)
Q Consensus 62 lR~pr~VrVGLIQ~si~~~t~~----apv~~qk~anl~k~~~lI~~AA~~GanII 112 (139)
-|+.|.|+||=|+-.-..|..- ..-+.|.++.++ -|.+-++.|++||
T Consensus 9 Rr~tr~V~VG~v~iGg~~Pi~VQSMt~t~T~Dv~atv~----Qi~~L~~aGceiV 59 (360)
T PRK00366 9 RRKTRQVKVGNVPIGGDAPIVVQSMTNTDTADVEATVA----QIKRLARAGCEIV 59 (360)
T ss_pred cccceEEEEcCEeECCCCcEEEEecCCCCchhHHHHHH----HHHHHHHcCCCEE
Confidence 3566788998766543221100 011334555554 5566668899997
No 81
>TIGR00530 AGP_acyltrn 1-acyl-sn-glycerol-3-phosphate acyltransferases. 1-acyl-sn-glycerol-3-phosphate acyltransferase is also called 1-AGP acyltransferase, lysophosphatidic acid acyltransferase, and LPA acyltransferase.
Probab=32.30 E-value=64 Score=22.11 Aligned_cols=27 Identities=15% Similarity=0.033 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhCCCeEEEccccccCC
Q psy3318 95 DRVEKLINAAGESGVNVLCLQEAWRRP 121 (139)
Q Consensus 95 ~k~~~lI~~AA~~GanIICLQElf~~P 121 (139)
....+.+.++...|..+++|||-...+
T Consensus 76 ~~~~~~~~~~l~~g~~v~ifPeG~~~~ 102 (130)
T TIGR00530 76 ATALKAAIEVLKQGRSIGVFPEGTRSR 102 (130)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCC
Confidence 444455666778899999999987543
No 82
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=32.24 E-value=81 Score=25.76 Aligned_cols=31 Identities=6% Similarity=0.145 Sum_probs=27.0
Q ss_pred CCchhhHHHHHHHHHHHHHHHHhCCCeEEEc
Q psy3318 84 CNVPQERSATYDRVEKLINAAGESGVNVLCL 114 (139)
Q Consensus 84 apv~~qk~anl~k~~~lI~~AA~~GanIICL 114 (139)
.|-.+.|+..+++..+.|+.|+..||..|++
T Consensus 77 s~~~~~r~~sv~~~~~~i~~A~~lga~~vv~ 107 (274)
T TIGR00587 77 SPDEEKEEKSLDVLDEELKRCELLGIMLYNF 107 (274)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 4556788899999999999999999998875
No 83
>KOG3235|consensus
Probab=31.59 E-value=9.3 Score=31.29 Aligned_cols=17 Identities=24% Similarity=0.241 Sum_probs=15.4
Q ss_pred hCCCeEEEccccccCCC
Q psy3318 106 ESGVNVLCLQEAWRRPD 122 (139)
Q Consensus 106 ~~GanIICLQElf~~Py 122 (139)
.+-+||.||||.|.|-|
T Consensus 15 mQ~~Nl~~lpENyqmky 31 (193)
T KOG3235|consen 15 MQHCNLLNLPENYQMKY 31 (193)
T ss_pred hhhcccccCcHHHhHHH
Confidence 56799999999999988
No 84
>PF03786 UxuA: D-mannonate dehydratase (UxuA); InterPro: IPR004628 This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.; GO: 0008927 mannonate dehydratase activity, 0006064 glucuronate catabolic process; PDB: 1TZ9_A 3FVM_A 3BDK_B 3BAN_B 3DBN_B.
Probab=31.54 E-value=67 Score=28.53 Aligned_cols=31 Identities=23% Similarity=0.572 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHHHhCCCeEEEccccccCCC
Q psy3318 89 ERSATYDRVEKLINAAGESGVNVLCLQEAWRRPD 122 (139)
Q Consensus 89 qk~anl~k~~~lI~~AA~~GanIICLQElf~~Py 122 (139)
.|++-++..++.|+-.|++|+++||.- | ||-
T Consensus 79 ~RD~~Ieny~~~Irnlg~~GI~vvcYN--F-MPv 109 (351)
T PF03786_consen 79 GRDEEIENYKQTIRNLGKAGIKVVCYN--F-MPV 109 (351)
T ss_dssp THHHHHHHHHHHHHHHHHTT--EEEEE-----SS
T ss_pred cHHHHHHHHHHHHHHHHhcCCCEEEEE--e-eee
Confidence 588999999999999999999999974 4 664
No 85
>PRK04044 rps5p 30S ribosomal protein S5P; Reviewed
Probab=31.25 E-value=29 Score=28.80 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=32.0
Q ss_pred CCcchHHHHHHcCCChHHHHHHHHHHhCCCCccccCCccc
Q psy3318 5 EPFESVETILQKYIPEDELKLVNAVLYGEPLKKLYLPNSK 44 (139)
Q Consensus 5 ~~~~sle~~l~~~lp~~~l~ev~riLyG~~~~~l~lp~~a 44 (139)
.++.|||+++++.+|-.|-+-|.-+|-+-+.+-+++...+
T Consensus 22 ~~i~s~e~i~~~~~~i~e~eivd~ll~~l~e~vv~i~rV~ 61 (211)
T PRK04044 22 GKITSIDEIFDSGLPIKEPEIVDVLLPDLEDEVLDINMVQ 61 (211)
T ss_pred CCcccHHHHHhcCCCcccchhhhhhhccceeEEEEEEeEE
Confidence 5899999999999999999999998855444556665544
No 86
>PF11900 DUF3420: Domain of unknown function (DUF3420); InterPro: IPR024228 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes and is about 50 amino acids in length.
Probab=31.23 E-value=42 Score=21.79 Aligned_cols=18 Identities=22% Similarity=0.423 Sum_probs=14.5
Q ss_pred HHHHcCCChHHHHHHHHH
Q psy3318 12 TILQKYIPEDELKLVNAV 29 (139)
Q Consensus 12 ~~l~~~lp~~~l~ev~ri 29 (139)
.+|+|+||.+-.++++-+
T Consensus 5 i~LeK~LP~eVv~kIk~l 22 (49)
T PF11900_consen 5 ISLEKELPPEVVKKIKDL 22 (49)
T ss_pred hhhhccCCHHHHHHHHHH
Confidence 378999999988887754
No 87
>PF04898 Glu_syn_central: Glutamate synthase central domain; InterPro: IPR006982 Glutamate synthase (GltS)1 is a key enzyme in the early stages of the assimilation of ammonia in bacteria, yeasts, and plants. In bacteria, L-glutamate is involved in osmoregulation, is the precursor for other amino acids, and can be the precursor for haem biosynthesis. In plants, GltS is especially essential in the reassimilation of ammonia released by photorespiration. On the basis of the amino acid sequence and the nature of the electron donor, three different classes of GltS can de defined as follows: 1) ferredoxin-dependent GltS (Fd-GltS), 2) NADPH-dependent GltS (NADPH-GltS), and 3) NADH-dependent GltS (properties of the three classes have been reviewed extensively []). The enzyme is a complex iron-sulphur flavoprotein catalysing the reductive transfer of the amido nitrogen from L-glutamine to 2-oxoglutarate to form two molecules of L-glutamate via intramolecular channelling of ammonia from the amidotransferase domain to the FMN-binding domain. Reaction of amidotransferase domain: L-glutamine + H2O = L-glutamate + NH3 Reactions of FMN-binding domain: 2-oxoglutarate + NH3 = 2-iminoglutarate + H2O 2e + FMNox = FMNred 2-iminoglutarate + FMNred = L-glutamate + FMNox The central domain of glutamate synthase connects the N-terminal amidotransferase domain with the FMN-binding domain and has an alpha/beta overall topology [].; GO: 0015930 glutamate synthase activity, 0006807 nitrogen compound metabolic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=31.01 E-value=1.2e+02 Score=26.30 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=30.9
Q ss_pred ceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccc
Q psy3318 68 VRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQE 116 (139)
Q Consensus 68 VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQE 116 (139)
++...+-..+..... .+..++-+++..+-+++|...|++||+|-.
T Consensus 119 ~~~~~l~~~f~~~~~----~~~L~~aL~~l~~ea~~Av~~G~~ilILsD 163 (287)
T PF04898_consen 119 FKAATLDATFPAEGG----DEGLEEALDRLCEEAEAAVREGANILILSD 163 (287)
T ss_dssp CCEEEEESEEESTTS----TTCHHHHHHHHHHHHHHHHHCT-SEEEEES
T ss_pred CCccEEEEEEECCcC----hhHHHHHHHHHHHHHHHHHHcCCcEEEECC
Confidence 556666665533211 234777889999999999999999999843
No 88
>KOG2338|consensus
Probab=30.88 E-value=41 Score=31.32 Aligned_cols=31 Identities=29% Similarity=0.347 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEccccccCCC
Q psy3318 92 ATYDRVEKLINAAGESGVNVLCLQEAWRRPD 122 (139)
Q Consensus 92 anl~k~~~lI~~AA~~GanIICLQElf~~Py 122 (139)
.=..|-..++.+--.--++|+||||.|.--|
T Consensus 146 ~W~~R~~~Ll~EL~~~dpDIlCLQEVq~d~~ 176 (495)
T KOG2338|consen 146 KWLRRSQNLLNELKHYDPDVLCLQEVQEDHY 176 (495)
T ss_pred chhHHhHHHHHHHhhcCCCeeeehhhhhhhh
Confidence 3456777888999999999999999986543
No 89
>KOG3250|consensus
Probab=28.99 E-value=34 Score=29.28 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=19.2
Q ss_pred HHHHHHHHHhCCCeEEEccccccCCC
Q psy3318 97 VEKLINAAGESGVNVLCLQEAWRRPD 122 (139)
Q Consensus 97 ~~~lI~~AA~~GanIICLQElf~~Py 122 (139)
..++|.+|-. --++.||+|+|.+|=
T Consensus 26 l~~lIsqale-~P~vf~F~ELl~l~n 50 (258)
T KOG3250|consen 26 LEELISQALE-APGVFVFGELLILPN 50 (258)
T ss_pred HHHHHHHHhc-CCCeeeHHHHHhhhh
Confidence 3456777666 478999999999884
No 90
>PF01553 Acyltransferase: Acyltransferase; InterPro: IPR002123 This family contains acyltransferases involved in phospholipid biosynthesis and other proteins of unknown function []. This domain is found in tafazzins, defects in which are the cause of Barth syndrome; a severe inherited disorder which is often fatal in childhood and is characterised by cardiac and skeletal abnormalities. Phospholipid/glycerol acyltransferase is not found in the viruses or the archaea and is under represented in the bacteria. Bacterial glycerol-phosphate acyltransferases are involved in membrane biogenesis since they use fatty acid chains to form the first membrane phospholipids [].; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1IUQ_A 1K30_A.
Probab=28.12 E-value=1.1e+02 Score=21.05 Aligned_cols=28 Identities=18% Similarity=0.140 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHhCCCeEEEccccccCC
Q psy3318 94 YDRVEKLINAAGESGVNVLCLQEAWRRP 121 (139)
Q Consensus 94 l~k~~~lI~~AA~~GanIICLQElf~~P 121 (139)
.....+.+.+....|-.|++|||-....
T Consensus 77 ~~~~~~~~~~~l~~~~~i~ifPEG~~~~ 104 (132)
T PF01553_consen 77 NRKALKDIKEILRKGGSIVIFPEGTRSR 104 (132)
T ss_dssp HHHHHHHHHHHHHC---EEE-TT-S---
T ss_pred cchhHHHHHHHhhhcceeeecCCccCcC
Confidence 3444445555667777799999985544
No 91
>smart00563 PlsC Phosphate acyltransferases. Function in phospholipid biosynthesis and have either glycerolphosphate, 1-acylglycerolphosphate, or 2-acylglycerolphosphoethanolamine acyltransferase activities. Tafazzin, the product of the gene mutated in patients with Barth syndrome, is a member of this family.
Probab=27.93 E-value=1.1e+02 Score=20.20 Aligned_cols=28 Identities=14% Similarity=0.096 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhCCCeEEEccccccCCC
Q psy3318 94 YDRVEKLINAAGESGVNVLCLQEAWRRPD 122 (139)
Q Consensus 94 l~k~~~lI~~AA~~GanIICLQElf~~Py 122 (139)
.+.+.++++ +.+.|..+++|||=-....
T Consensus 62 ~~~~~~~~~-~l~~~~~~~ifPeG~~~~~ 89 (118)
T smart00563 62 RAALREAVR-LLRDGGWLLIFPEGTRSRP 89 (118)
T ss_pred HHHHHHHHH-HHhCCCEEEEeCCcccCCC
Confidence 344444444 5567999999999765544
No 92
>PF15605 Toxin_52: Putative toxin 52
Probab=27.39 E-value=61 Score=24.33 Aligned_cols=30 Identities=13% Similarity=0.321 Sum_probs=26.2
Q ss_pred cchHHHHHHcCCChHHHHHHHHHHhCCCCc
Q psy3318 7 FESVETILQKYIPEDELKLVNAVLYGEPLK 36 (139)
Q Consensus 7 ~~sle~~l~~~lp~~~l~ev~riLyG~~~~ 36 (139)
++-+|.++++||...+|+-.+|=|-|.+++
T Consensus 10 i~k~dn~I~~hltd~D~sgt~Rdl~G~pVp 39 (103)
T PF15605_consen 10 INKIDNIINSHLTDMDFSGTLRDLQGNPVP 39 (103)
T ss_pred HHHHHHHHHhhccccchHHHHHHHcCCccc
Confidence 455777899999999999999999999774
No 93
>PRK15018 1-acyl-sn-glycerol-3-phosphate acyltransferase; Provisional
Probab=27.01 E-value=1e+02 Score=25.25 Aligned_cols=32 Identities=9% Similarity=0.208 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEccccccCCC
Q psy3318 91 SATYDRVEKLINAAGESGVNVLCLQEAWRRPD 122 (139)
Q Consensus 91 ~anl~k~~~lI~~AA~~GanIICLQElf~~Py 122 (139)
...++...+.++...+.|..|++|||=-..+.
T Consensus 122 ~~~~~~l~~~~~~l~~~g~sv~IFPEGTRs~~ 153 (245)
T PRK15018 122 TKAHGTIAEVVNHFKKRRISIWMFPEGTRSRG 153 (245)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEECCccCCCC
Confidence 34455555566666677999999999876664
No 94
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=26.87 E-value=22 Score=30.07 Aligned_cols=21 Identities=33% Similarity=0.348 Sum_probs=17.8
Q ss_pred HHHHHHhCCCeEEEccccccCCCC
Q psy3318 100 LINAAGESGVNVLCLQEAWRRPDR 123 (139)
Q Consensus 100 lI~~AA~~GanIICLQElf~~Pya 123 (139)
-|+.|++.||+.| |+++.|||
T Consensus 137 qi~~A~~~Gad~V---ELhTG~yA 157 (239)
T PF03740_consen 137 QIEAAKELGADRV---ELHTGPYA 157 (239)
T ss_dssp HHHHHHHTT-SEE---EEETHHHH
T ss_pred HHHHHHHcCCCEE---EEehhHhh
Confidence 5888999999988 99999995
No 95
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=26.58 E-value=92 Score=19.91 Aligned_cols=18 Identities=22% Similarity=0.397 Sum_probs=14.7
Q ss_pred HHHHHHHHHhCCCeEEEc
Q psy3318 97 VEKLINAAGESGVNVLCL 114 (139)
Q Consensus 97 ~~~lI~~AA~~GanIICL 114 (139)
..++++.|.+.|+.+|++
T Consensus 63 ~~~~~~~a~~~g~~ii~i 80 (87)
T cd04795 63 LLAALEIAKELGIPVIAI 80 (87)
T ss_pred HHHHHHHHHHcCCeEEEE
Confidence 445788889999999875
No 96
>PTZ00070 40S ribosomal protein S2; Provisional
Probab=26.49 E-value=55 Score=28.06 Aligned_cols=40 Identities=20% Similarity=0.262 Sum_probs=30.2
Q ss_pred CCcchHHHHHHcCCChHHHHHHHHHHhCCCC--ccccCCccc
Q psy3318 5 EPFESVETILQKYIPEDELKLVNAVLYGEPL--KKLYLPNSK 44 (139)
Q Consensus 5 ~~~~sle~~l~~~lp~~~l~ev~riLyG~~~--~~l~lp~~a 44 (139)
..+.|||+++...||-.|.+-|.-+|-+.++ +-|++-...
T Consensus 50 gki~s~eei~~~~lpikE~eIvd~ll~~~~L~eeVl~I~rVq 91 (257)
T PTZ00070 50 GKITSLEEIFLFSIPIKEYQIVDHFFAESKLKDEVMKIMPVQ 91 (257)
T ss_pred CccccHHHHHhcCCCccchhhHHHHccCccchheEEEEeeeE
Confidence 5789999999999999999999887743433 346664443
No 97
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=26.31 E-value=1.1e+02 Score=24.84 Aligned_cols=52 Identities=13% Similarity=0.222 Sum_probs=30.5
Q ss_pred eeeeccCCCCCCCCCccceEEEEecccCCCCCCCCchhhHHHHHHHH-HHHHHHHHhCCCeEEEc
Q psy3318 51 VGYKFGAKPESSRPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRV-EKLINAAGESGVNVLCL 114 (139)
Q Consensus 51 ~~y~f~a~~EqlR~pr~VrVGLIQ~si~~~t~~apv~~qk~anl~k~-~~lI~~AA~~GanIICL 114 (139)
-||.-....-.||..+.-.||+|-..+.. |+ +..+ ..+-+.|.+.|.++++.
T Consensus 43 lgY~pn~~ar~l~~~~~~~Igvi~~~~~~-----~f-------~~~~~~gi~~~~~~~g~~~~~~ 95 (343)
T PRK10727 43 LSYHPNANARALAQQSTETVGLVVGDVSD-----PF-------FGAMVKAVEQVAYHTGNFLLIG 95 (343)
T ss_pred HCCCCCHHHHhhhhCCCCeEEEEeCCCCc-----ch-------HHHHHHHHHHHHHHcCCEEEEE
Confidence 46665555557787777889999765422 22 2222 23344455668777653
No 98
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=26.26 E-value=1.2e+02 Score=24.24 Aligned_cols=28 Identities=21% Similarity=0.465 Sum_probs=24.6
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCeEEEc
Q psy3318 87 PQERSATYDRVEKLINAAGESGVNVLCL 114 (139)
Q Consensus 87 ~~qk~anl~k~~~lI~~AA~~GanIICL 114 (139)
.+-++..+++....|+.|+..|++.|++
T Consensus 77 ~~~r~~~~~~~~~~i~~A~~lG~~~v~~ 104 (279)
T cd00019 77 KEKREKSIERLKDEIERCEELGIRLLVF 104 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 3468888999999999999999999876
No 99
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=26.17 E-value=76 Score=27.31 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEEc
Q psy3318 90 RSATYDRVEKLINAAGESGVNVLCL 114 (139)
Q Consensus 90 k~anl~k~~~lI~~AA~~GanIICL 114 (139)
-.+.-+++..|++-|+.+||+-++|
T Consensus 78 t~~~~a~a~~la~yA~acGA~aLvl 102 (272)
T COG4130 78 TEERVAEARGLADYAAACGAKALVL 102 (272)
T ss_pred ChHHHHHHHHHHHHHHhcCCceEEE
Confidence 3456789999999999999998776
No 100
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=26.01 E-value=88 Score=28.20 Aligned_cols=27 Identities=7% Similarity=0.306 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCeEEEc
Q psy3318 88 QERSATYDRVEKLINAAGESGVNVLCL 114 (139)
Q Consensus 88 ~qk~anl~k~~~lI~~AA~~GanIICL 114 (139)
..++.-++..++.|+-.|++|+.+||.
T Consensus 76 ~~rd~~Ienyk~~irNla~~GI~vicY 102 (394)
T TIGR00695 76 GNYGRWIENYKQTLRNLAQCGIKTVCY 102 (394)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 358888999999999999999999996
No 101
>KOG2756|consensus
Probab=25.91 E-value=74 Score=28.24 Aligned_cols=39 Identities=21% Similarity=0.142 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEccccccCCCCCCchhhhhhhccc
Q psy3318 92 ATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGSQVYLIVKRQS 136 (139)
Q Consensus 92 anl~k~~~lI~~AA~~GanIICLQElf~~PyaFCt~Ed~~~~~~~ 136 (139)
....|...+..--+.---+||||||.-.--| +.+-|+||
T Consensus 114 ~l~~RMrAv~H~i~l~sPdiiflQEV~p~~y------~~~~K~~s 152 (349)
T KOG2756|consen 114 NLSERMRAVCHYLALYSPDVIFLQEVIPPYY------SYLKKRSS 152 (349)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEeecCchhh------HHHHHhhh
Confidence 3456777777777777899999999988767 67777775
No 102
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=25.88 E-value=3.1e+02 Score=24.73 Aligned_cols=74 Identities=14% Similarity=0.246 Sum_probs=43.1
Q ss_pred cCCeeeeeeeccCC--CCCC-CCCccceEEEEecccCCCCCCC--Cc----hhhHHHH----HHHHHHHHHHHHhCCCeE
Q psy3318 45 SNEFNVVGYKFGAK--PESS-RPPRLVRVGIIQNHIGNSTVSC--NV----PQERSAT----YDRVEKLINAAGESGVNV 111 (139)
Q Consensus 45 ~~~Fel~~y~f~a~--~Eql-R~pr~VrVGLIQ~si~~~t~~a--pv----~~qk~an----l~k~~~lI~~AA~~GanI 111 (139)
+.-+=+.|+.|+-. .+++ +.-...||.++...+..+.+-. .+ ..+.+.. .+....+|+.....|+++
T Consensus 198 ~~s~li~Givi~~~~~~~~m~~~i~n~kIlll~~~Le~~~~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~l 277 (527)
T cd03335 198 KESYLVNGYALNCTRASQGMPTRVKNAKIACLDFNLQKTKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANV 277 (527)
T ss_pred hhcceeeeEEEecccCCCCCcccccCCcEEEEeccCCCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence 44445688888633 2222 1112468999998875532200 00 0222222 455567888888999999
Q ss_pred EEccccc
Q psy3318 112 LCLQEAW 118 (139)
Q Consensus 112 ICLQElf 118 (139)
|+.+.-.
T Consensus 278 vi~~k~I 284 (527)
T cd03335 278 VLTTGGI 284 (527)
T ss_pred EEeCCCC
Confidence 9887654
No 103
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=25.86 E-value=93 Score=25.89 Aligned_cols=37 Identities=22% Similarity=0.116 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHhCCCeEEEccccccCCCCCCchhhhhhh
Q psy3318 93 TYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGSQVYLIVK 133 (139)
Q Consensus 93 nl~k~~~lI~~AA~~GanIICLQElf~~PyaFCt~Ed~~~~ 133 (139)
+.+.+.++++.|.+.||+-|.+ ..||-|+..++.++.
T Consensus 81 ~t~~~i~la~~a~~~Gad~v~v----~~P~y~~~~~~~i~~ 117 (290)
T TIGR00683 81 NLKEAVELGKYATELGYDCLSA----VTPFYYKFSFPEIKH 117 (290)
T ss_pred CHHHHHHHHHHHHHhCCCEEEE----eCCcCCCCCHHHHHH
Confidence 3456677899999999998865 447658888777654
No 104
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=25.45 E-value=1.1e+02 Score=21.29 Aligned_cols=28 Identities=7% Similarity=0.094 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhCCCeEEEccccccCCCC
Q psy3318 96 RVEKLINAAGESGVNVLCLQEAWRRPDR 123 (139)
Q Consensus 96 k~~~lI~~AA~~GanIICLQElf~~Pya 123 (139)
.+.+.++.|.+.|+.+|++=..+..|.+
T Consensus 62 ~~~~~~~~a~~~g~~vi~iT~~~~s~la 89 (128)
T cd05014 62 ELLNLLPHLKRRGAPIIAITGNPNSTLA 89 (128)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCCCCchh
Confidence 3446888899999999999888887763
No 105
>PRK11440 putative hydrolase; Provisional
Probab=24.97 E-value=1.7e+02 Score=22.28 Aligned_cols=30 Identities=20% Similarity=0.355 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHhCCCeEEEccccc
Q psy3318 89 ERSATYDRVEKLINAAGESGVNVLCLQEAW 118 (139)
Q Consensus 89 qk~anl~k~~~lI~~AA~~GanIICLQElf 118 (139)
+..+.+..+..+++.|-+.|.-||-.+..|
T Consensus 29 ~~~~~i~~i~~l~~~ar~~g~pVi~~~~~~ 58 (188)
T PRK11440 29 TADEVVARAARLAAKFRASGSPVVLVRVGW 58 (188)
T ss_pred hHHHHHHHHHHHHHHHHHcCCcEEEEeccc
Confidence 356789999999999999999999777655
No 106
>KOG2450|consensus
Probab=24.74 E-value=93 Score=29.09 Aligned_cols=27 Identities=19% Similarity=0.452 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEcccc
Q psy3318 91 SATYDRVEKLINAAGESGVNVLCLQEA 117 (139)
Q Consensus 91 ~anl~k~~~lI~~AA~~GanIICLQEl 117 (139)
+.-++|+..+|+.|.+.||+++|=-+-
T Consensus 348 ~~q~ekI~~yi~~~k~eGa~l~~gG~~ 374 (501)
T KOG2450|consen 348 KTQYEKILGYIESGKKEGATLLCGGVR 374 (501)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEecCcc
Confidence 345789999999999999999996544
No 107
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=24.61 E-value=1.1e+02 Score=23.94 Aligned_cols=42 Identities=17% Similarity=0.133 Sum_probs=24.4
Q ss_pred CCCCCccceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEE
Q psy3318 61 SSRPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLC 113 (139)
Q Consensus 61 qlR~pr~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIIC 113 (139)
.||..+.-+||+|......+ + -..-...+.++|.+.|.+++.
T Consensus 29 ~l~~~~~~~ig~v~~~~~~~-----~------~~~~~~gi~~~~~~~g~~~~~ 70 (309)
T PRK11041 29 NLKRNESRTILVIVPDICDP-----F------FSEIIRGIEVTAAEHGYLVLI 70 (309)
T ss_pred HhhcCCCcEEEEEeCCCcCc-----c------HHHHHHHHHHHHHHCCCEEEE
Confidence 57777778899998753221 1 122223344555566777765
No 108
>PRK02877 hypothetical protein; Provisional
Probab=24.31 E-value=1.3e+02 Score=22.25 Aligned_cols=23 Identities=22% Similarity=0.153 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEE
Q psy3318 91 SATYDRVEKLINAAGESGVNVLC 113 (139)
Q Consensus 91 ~anl~k~~~lI~~AA~~GanIIC 113 (139)
++--+...+|+++|.+.|||-|+
T Consensus 56 ~aR~~A~~rm~~~A~~lGAnAVI 78 (106)
T PRK02877 56 KAREIAFEELGEQARALGADAVV 78 (106)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEE
Confidence 34445667899999999999875
No 109
>PF10042 DUF2278: Uncharacterized conserved protein (DUF2278); InterPro: IPR019268 This entry consists of hypothetical proteins with no known function.
Probab=24.25 E-value=1.9e+02 Score=23.76 Aligned_cols=30 Identities=17% Similarity=0.283 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEEcccccc
Q psy3318 90 RSATYDRVEKLINAAGESGVNVLCLQEAWR 119 (139)
Q Consensus 90 k~anl~k~~~lI~~AA~~GanIICLQElf~ 119 (139)
-..+.+.+..+|..|...+|.|.+|-|.|.
T Consensus 117 ~ndl~d~Le~~l~~A~~~~~~iyvFG~~F~ 146 (206)
T PF10042_consen 117 DNDLNDDLEPYLQRAISDDATIYVFGEPFR 146 (206)
T ss_pred cchHHHHHHHHHHHHHhCCCEEEEECceec
Confidence 346788899999999999999999999984
No 110
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=24.04 E-value=1.1e+02 Score=16.73 Aligned_cols=17 Identities=29% Similarity=0.483 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHhCC
Q psy3318 92 ATYDRVEKLINAAGESG 108 (139)
Q Consensus 92 anl~k~~~lI~~AA~~G 108 (139)
.+.+++..+.+.|++.|
T Consensus 22 ~d~~~A~~~~~~Aa~~g 38 (39)
T PF08238_consen 22 KDYEKAFKWYEKAAEQG 38 (39)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred ccccchHHHHHHHHHcc
Confidence 47899999999999987
No 111
>PF01906 YbjQ_1: Putative heavy-metal-binding; InterPro: IPR002765 This family of bacterial proteins have not been characterised.; PDB: 3QKB_A 1VR4_D 1Y2I_D 2GTC_C.
Probab=24.03 E-value=1.3e+02 Score=21.44 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEE
Q psy3318 91 SATYDRVEKLINAAGESGVNVLC 113 (139)
Q Consensus 91 ~anl~k~~~lI~~AA~~GanIIC 113 (139)
++-.+-..+|.++|.+.|||-|+
T Consensus 56 ~~r~~A~~~L~~~A~~~GAnAVI 78 (105)
T PF01906_consen 56 EAREEALERLKEEAKELGANAVI 78 (105)
T ss_dssp HHHHHHHHHHHHHHHHTT-SEEE
T ss_pred HHHHHHHHHHHHHHhhCCCCEEE
Confidence 34455667899999999999864
No 112
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=23.83 E-value=1e+02 Score=21.37 Aligned_cols=27 Identities=11% Similarity=0.102 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhCCCeEEEccccccCCC
Q psy3318 96 RVEKLINAAGESGVNVLCLQEAWRRPD 122 (139)
Q Consensus 96 k~~~lI~~AA~~GanIICLQElf~~Py 122 (139)
.+.++++.|.+.|+.+|++=.--..|.
T Consensus 61 e~~~~~~~a~~~g~~vi~iT~~~~s~l 87 (126)
T cd05008 61 DTLAALRLAKEKGAKTVAITNVVGSTL 87 (126)
T ss_pred HHHHHHHHHHHcCCeEEEEECCCCChH
Confidence 355689999999999999876666554
No 113
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=23.80 E-value=1.4e+02 Score=23.17 Aligned_cols=33 Identities=18% Similarity=0.418 Sum_probs=26.5
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCC
Q psy3318 87 PQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPD 122 (139)
Q Consensus 87 ~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~Py 122 (139)
.++|..|++|+..+...-+.+|..+|| .+-.||
T Consensus 53 ~~dR~e~~rr~~~~A~ll~~~G~ivIv---a~isp~ 85 (156)
T PF01583_consen 53 KEDREENIRRIAEVAKLLADQGIIVIV---AFISPY 85 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSEEEE---E----S
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEEE---eeccCc
Confidence 578999999999999999999999998 466777
No 114
>PRK12855 hypothetical protein; Provisional
Probab=23.67 E-value=1.3e+02 Score=22.13 Aligned_cols=22 Identities=18% Similarity=0.181 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHhCCCeEEE
Q psy3318 92 ATYDRVEKLINAAGESGVNVLC 113 (139)
Q Consensus 92 anl~k~~~lI~~AA~~GanIIC 113 (139)
+--+...+|++.|.+.|||-|+
T Consensus 57 aR~~A~~rm~~~A~~lGAnAVV 78 (103)
T PRK12855 57 ARDIAMEEMKTLARQKNANAIV 78 (103)
T ss_pred HHHHHHHHHHHHHHHcCCCEEE
Confidence 3445567899999999999875
No 115
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=22.68 E-value=1e+02 Score=26.24 Aligned_cols=27 Identities=22% Similarity=0.078 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhCCCeEEEccccccCCC
Q psy3318 96 RVEKLINAAGESGVNVLCLQEAWRRPD 122 (139)
Q Consensus 96 k~~~lI~~AA~~GanIICLQElf~~Py 122 (139)
-+.+++..|+..|..+||+-=+|..||
T Consensus 76 ~H~e~a~~al~aGk~VIdekPa~~~pl 102 (285)
T TIGR03215 76 AHARHARLLAELGKIVIDLTPAAIGPY 102 (285)
T ss_pred HHHHHHHHHHHcCCEEEECCccccCCc
Confidence 345788899999999999999999887
No 116
>PRK07328 histidinol-phosphatase; Provisional
Probab=22.61 E-value=99 Score=25.17 Aligned_cols=27 Identities=15% Similarity=0.163 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhCCCeEEEccccccCCC
Q psy3318 96 RVEKLINAAGESGVNVLCLQEAWRRPD 122 (139)
Q Consensus 96 k~~~lI~~AA~~GanIICLQElf~~Py 122 (139)
.+.++|++|.+.|.+.|||-|-...+|
T Consensus 19 ~~ee~v~~A~~~Gl~~i~~TdH~~~~~ 45 (269)
T PRK07328 19 TPEEYVQAARRAGLKEIGFTDHLPMYF 45 (269)
T ss_pred CHHHHHHHHHHCCCCEEEEecCCCCCC
Confidence 367899999999999999999877643
No 117
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=22.61 E-value=1.2e+02 Score=28.24 Aligned_cols=54 Identities=20% Similarity=0.263 Sum_probs=42.5
Q ss_pred eEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeE-EEcccc-ccCCCC--CCchhhhhhh
Q psy3318 69 RVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNV-LCLQEA-WRRPDR--YGSQVYLIVK 133 (139)
Q Consensus 69 rVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanI-ICLQEl-f~~Pya--FCt~Ed~~~~ 133 (139)
||-||=-||+--|| .+++..|+++|+++-|.+ |.-|++ |+++|. +.+++.+|-.
T Consensus 350 rVvlVDDSIVRGTT-----------sr~IV~mlReAGAkEVHvriasP~i~~Pc~YGID~pt~~eLIA~ 407 (470)
T COG0034 350 RVVLVDDSIVRGTT-----------SRRIVQMLREAGAKEVHVRIASPPIRYPCFYGIDMPTREELIAA 407 (470)
T ss_pred eEEEEccccccCcc-----------HHHHHHHHHHhCCCEEEEEecCCCccCCCccccCCCCHHHHhhC
Confidence 68899999998877 788999999999998888 666664 677764 5677776643
No 118
>COG0219 CspR Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]
Probab=22.59 E-value=1.4e+02 Score=23.90 Aligned_cols=38 Identities=16% Similarity=0.337 Sum_probs=29.5
Q ss_pred cceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCC
Q psy3318 67 LVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYG 125 (139)
Q Consensus 67 ~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFC 125 (139)
+++|+|.|-.|+.+|. | +|+.+|.-|+++..- -|++|-
T Consensus 2 ~~~IvL~~PeIP~NTG----------N------I~R~ca~tga~LhlI-----~PlGF~ 39 (155)
T COG0219 2 MLNIVLYQPEIPPNTG----------N------IIRTCAATGAELHLI-----EPLGFD 39 (155)
T ss_pred ccEEEEECCCCCCchh----------H------HHHHHHhcCCeEEEE-----ccCCCc
Confidence 5789999999988775 3 678888999998643 377673
No 119
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=22.53 E-value=1e+02 Score=19.57 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhCCCeEEEccccccCCC
Q psy3318 96 RVEKLINAAGESGVNVLCLQEAWRRPD 122 (139)
Q Consensus 96 k~~~lI~~AA~~GanIICLQElf~~Py 122 (139)
...++++.|.+.|.+.|++-+--++..
T Consensus 16 ~~~~~~~~a~~~g~~~v~iTDh~~~~~ 42 (67)
T smart00481 16 SPEELVKRAKELGLKAIAITDHGNLFG 42 (67)
T ss_pred CHHHHHHHHHHcCCCEEEEeeCCcccC
Confidence 466899999999999999999876543
No 120
>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases). Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3.
Probab=22.48 E-value=79 Score=26.42 Aligned_cols=24 Identities=13% Similarity=0.281 Sum_probs=19.2
Q ss_pred HHHHHHHhCCCeEEEccccccCCC
Q psy3318 99 KLINAAGESGVNVLCLQEAWRRPD 122 (139)
Q Consensus 99 ~lI~~AA~~GanIICLQElf~~Py 122 (139)
++.+..+.+||+||+.|=+|+.++
T Consensus 183 E~~r~la~~Gadii~~paaw~~~~ 206 (295)
T cd07566 183 EFATHVLDNGTELIICPMAWLHSL 206 (295)
T ss_pred HHHHHHHHCCCCEEEEechhcCCC
Confidence 355666789999999999998754
No 121
>TIGR01020 rpsE_arch ribosomal protein S5(archaeal type)/S2(eukaryote cytosolic type). This model finds eukaryotic ribosomal protein S2 as well as archaeal ribosomal protein S5.
Probab=22.37 E-value=72 Score=26.54 Aligned_cols=40 Identities=18% Similarity=0.238 Sum_probs=30.3
Q ss_pred CCcchHHHHHHcCCChHHHHHHHHHHhCC-CCccccCCccc
Q psy3318 5 EPFESVETILQKYIPEDELKLVNAVLYGE-PLKKLYLPNSK 44 (139)
Q Consensus 5 ~~~~sle~~l~~~lp~~~l~ev~riLyG~-~~~~l~lp~~a 44 (139)
.++.|||+++...||-.|.+-|.-+|-+- +.+-|++....
T Consensus 21 g~i~s~~ei~~~~~~i~E~eivd~ll~~l~~e~vl~I~rV~ 61 (212)
T TIGR01020 21 GKIKSIDEIFLRNLPIKEPEIVDYLLPDLNEEEVLDVSLVQ 61 (212)
T ss_pred CCcccHHHHHHcCCCccchhhHHHHhhhcCcceEEEEEeeE
Confidence 57899999999999999999999887332 22446665444
No 122
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=21.82 E-value=2.2e+02 Score=25.54 Aligned_cols=74 Identities=11% Similarity=0.267 Sum_probs=43.4
Q ss_pred cCCeeeeeeeccCCC--CCC-CCCccceEEEEecccCCCCCCCC----c--hhhH----HHHHHHHHHHHHHHHhCCCeE
Q psy3318 45 SNEFNVVGYKFGAKP--ESS-RPPRLVRVGIIQNHIGNSTVSCN----V--PQER----SATYDRVEKLINAAGESGVNV 111 (139)
Q Consensus 45 ~~~Fel~~y~f~a~~--Eql-R~pr~VrVGLIQ~si~~~t~~ap----v--~~qk----~anl~k~~~lI~~AA~~GanI 111 (139)
+.-+=+.|+.|+... +.+ +.-...||.++..+...+..... + .++. +.-.+.+..+|+.....|+++
T Consensus 206 ~ds~lv~G~vi~~~~~~~~m~~~i~n~kIlll~~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~l 285 (519)
T TIGR02339 206 DDTELVEGIVVDKEPVHPGMPKRVKNAKIALLDAPLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANV 285 (519)
T ss_pred hcceeEeeEEEecCCCCCCCccccCCCcEEEEeccccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcE
Confidence 445556788886442 222 22234688999887543322011 0 1222 222356778888999999999
Q ss_pred EEccccc
Q psy3318 112 LCLQEAW 118 (139)
Q Consensus 112 ICLQElf 118 (139)
|+.+.-.
T Consensus 286 vi~~~~I 292 (519)
T TIGR02339 286 VFCQKGI 292 (519)
T ss_pred EEECCCc
Confidence 9988654
No 123
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]
Probab=21.27 E-value=76 Score=28.68 Aligned_cols=27 Identities=26% Similarity=0.260 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhCCCeEEEccccccC
Q psy3318 94 YDRVEKLINAAGESGVNVLCLQEAWRR 120 (139)
Q Consensus 94 l~k~~~lI~~AA~~GanIICLQElf~~ 120 (139)
..|..-+..+-..-.++|+||||.=.-
T Consensus 59 ~~R~~~L~~EL~~Yn~Di~CLQEvd~~ 85 (378)
T COG5239 59 SYRSRLLLQELLYYNADILCLQEVDAE 85 (378)
T ss_pred HHHHHHHHHHHhccCCceeeeehhhhh
Confidence 455666777777889999999997443
No 124
>cd07993 LPLAT_DHAPAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: GPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as dihydroxyacetone phosphate acyltransferase (DHAPAT, also known as 1 glycerol-3-phosphate O-acyltransferase 1) and similar proteins.
Probab=21.22 E-value=1.2e+02 Score=23.59 Aligned_cols=27 Identities=11% Similarity=0.122 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhCCCeEEEccccccCCC
Q psy3318 96 RVEKLINAAGESGVNVLCLQEAWRRPD 122 (139)
Q Consensus 96 k~~~lI~~AA~~GanIICLQElf~~Py 122 (139)
...+.+.++.+.|-.+++|||=-.+..
T Consensus 89 ~~~~~~~~~l~~g~~l~iFPEGtrs~~ 115 (205)
T cd07993 89 VLQEYVQELLKNGQPLEFFIEGTRSRT 115 (205)
T ss_pred HHHHHHHHHHhCCceEEEEcCCCCCCC
Confidence 334566777788999999999866554
No 125
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=21.09 E-value=1.4e+02 Score=21.82 Aligned_cols=26 Identities=19% Similarity=0.363 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEEcc
Q psy3318 90 RSATYDRVEKLINAAGESGVNVLCLQ 115 (139)
Q Consensus 90 k~anl~k~~~lI~~AA~~GanIICLQ 115 (139)
++..++.+.+.|+.|+..|++.+.+.
T Consensus 66 r~~~~~~~~~~i~~a~~lg~~~i~~~ 91 (213)
T PF01261_consen 66 REEALEYLKKAIDLAKRLGAKYIVVH 91 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHTBSEEEEE
T ss_pred hHHHHHHHHHHHHHHHHhCCCceeec
Confidence 77889999999999999999998876
No 126
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=21.09 E-value=1.2e+02 Score=21.49 Aligned_cols=18 Identities=28% Similarity=0.137 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhCCCeEEE
Q psy3318 96 RVEKLINAAGESGVNVLC 113 (139)
Q Consensus 96 k~~~lI~~AA~~GanIIC 113 (139)
...+|++.|.+.|||-|+
T Consensus 30 Al~eM~e~A~~lGAnAVV 47 (74)
T TIGR03884 30 IVENLREKVKAKGGMGLI 47 (74)
T ss_pred HHHHHHHHHHHcCCCEEE
Confidence 345799999999999875
No 127
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=20.86 E-value=1.7e+02 Score=24.31 Aligned_cols=33 Identities=21% Similarity=0.394 Sum_probs=30.3
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCC
Q psy3318 87 PQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPD 122 (139)
Q Consensus 87 ~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~Py 122 (139)
.++|..|+.|+..+.+--+.+|+=+|| .|=+||
T Consensus 74 ~edR~eniRRvaevAkll~daG~iviv---a~ISP~ 106 (197)
T COG0529 74 REDRIENIRRVAEVAKLLADAGLIVIV---AFISPY 106 (197)
T ss_pred hHHHHHHHHHHHHHHHHHHHCCeEEEE---EeeCcc
Confidence 478999999999999999999999988 788888
No 128
>PRK12856 hypothetical protein; Provisional
Probab=20.86 E-value=1.6e+02 Score=21.65 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHhCCCeEEE
Q psy3318 92 ATYDRVEKLINAAGESGVNVLC 113 (139)
Q Consensus 92 anl~k~~~lI~~AA~~GanIIC 113 (139)
+--+...+|++.|.+.|||-|+
T Consensus 57 aR~~A~~rm~~~A~~lGAnAVv 78 (103)
T PRK12856 57 ARDIAMDEMKELAKQKGANAIV 78 (103)
T ss_pred HHHHHHHHHHHHHHHcCCCEEE
Confidence 3445567899999999999875
No 129
>cd00431 cysteine_hydrolases Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It also contains isochorismatase, an enzyme that catalyzes the conversion of isochorismate to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of the vinyl ether bond, and other related enzymes with unknown function.
Probab=20.73 E-value=3.1e+02 Score=19.78 Aligned_cols=34 Identities=15% Similarity=0.241 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCeEEEccccccCC
Q psy3318 88 QERSATYDRVEKLINAAGESGVNVLCLQEAWRRP 121 (139)
Q Consensus 88 ~qk~anl~k~~~lI~~AA~~GanIICLQElf~~P 121 (139)
.+....++++.++++.|-..|..||-.+-.+...
T Consensus 20 ~~~~~~~~~i~~l~~~ar~~~~~vi~~~~~~~~~ 53 (161)
T cd00431 20 PGADELVPNINRLLAAARAAGIPVIFTRDWHPPD 53 (161)
T ss_pred ccHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCC
Confidence 4567889999999999999999888777666643
No 130
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases). Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic
Probab=20.41 E-value=1.1e+02 Score=25.24 Aligned_cols=23 Identities=9% Similarity=0.260 Sum_probs=18.7
Q ss_pred HHHHHHhCCCeEEEccccccCCC
Q psy3318 100 LINAAGESGVNVLCLQEAWRRPD 122 (139)
Q Consensus 100 lI~~AA~~GanIICLQElf~~Py 122 (139)
+.+..+.+||+||+.|=.|+.+.
T Consensus 161 ~~r~la~~GAdill~ps~~~~~~ 183 (291)
T cd07565 161 IARECAYKGAELIIRIQGYMYPA 183 (291)
T ss_pred HHHHHHHCCCeEEEECCcCCCCc
Confidence 66677789999999999887554
No 131
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=20.24 E-value=1.6e+02 Score=24.60 Aligned_cols=37 Identities=16% Similarity=0.117 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhCCCeEEEccccccCCCCCCchhhhhhh
Q psy3318 93 TYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGSQVYLIVK 133 (139)
Q Consensus 93 nl~k~~~lI~~AA~~GanIICLQElf~~PyaFCt~Ed~~~~ 133 (139)
+.+.+.++++.|.+.||+-|.+ ..||-|..+++.++.
T Consensus 80 ~t~~ai~~a~~A~~~Gad~v~v----~pP~y~~~~~~~l~~ 116 (294)
T TIGR02313 80 NHDETLELTKFAEEAGADAAMV----IVPYYNKPNQEALYD 116 (294)
T ss_pred hHHHHHHHHHHHHHcCCCEEEE----cCccCCCCCHHHHHH
Confidence 4566677999999999987643 347657777777654
No 132
>PF04745 Pox_A8: VITF-3 subunit protein; InterPro: IPR006834 This is a family of Chordopoxvirus proteins composing one of the two subunits that make up VITF-3, a virally encoded complex necessary for intermediate stage transcription [].
Probab=20.10 E-value=1.2e+02 Score=26.38 Aligned_cols=99 Identities=23% Similarity=0.367 Sum_probs=64.3
Q ss_pred CCCCCCcchHHHHHHcCCChHHHHHHHHHHhCCCCcc-------------ccCCccc--cCCee---------eeeeecc
Q psy3318 1 MSADEPFESVETILQKYIPEDELKLVNAVLYGEPLKK-------------LYLPNSK--SNEFN---------VVGYKFG 56 (139)
Q Consensus 1 m~~~~~~~sle~~l~~~lp~~~l~ev~riLyG~~~~~-------------l~lp~~a--~~~Fe---------l~~y~f~ 56 (139)
|++ .+|.=-|..+|-+.|+ ||+..-++ |-.|.+. .-||| |+++. +
T Consensus 102 lss-kG~klTEsmiE~fFPE---------Ly~E~SKkFkF~sQI~iIQekLGy~~~~Yh~YdFE~YYstvaL~lr~~~-~ 170 (288)
T PF04745_consen 102 LSS-KGYKLTESMIEIFFPE---------LYNENSKKFKFNSQICIIQEKLGYPPSSYHTYDFERYYSTVALVLRSYD-D 170 (288)
T ss_pred ecc-cCcchHHHHHHHhhHH---------HHhhcccceechhhHHHHHHHhCCCCCceeeeehhhHHHHHHHHHhcCC-c
Confidence 566 6888889999999997 77764444 3444444 34555 34443 2
Q ss_pred CCCCCCCCCc----------------cceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEE
Q psy3318 57 AKPESSRPPR----------------LVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLC 113 (139)
Q Consensus 57 a~~EqlR~pr----------------~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIIC 113 (139)
.+-=..|+.+ .+|-++||-+++.. +=|..-+.--+-.+-++++.+-..|..+.|
T Consensus 171 ~~iFd~R~eS~~v~slsEITYR~Y~i~lks~~vqWS~Stg---aVvnQ~VNtVL~tv~ell~k~~~~~~~~~C 240 (288)
T PF04745_consen 171 SEIFDVRQESEFVSSLSEITYRFYLIQLKSNAVQWSSSTG---AVVNQMVNTVLITVYELLEKCIEEGKTFTC 240 (288)
T ss_pred hhhccchhhhHHHHHHHHHHHHHHHhhhhcCceEEeechh---HHHHHHHHHHHHHHHHHHHHHHhcCCceEE
Confidence 2222234332 25778888876332 445555666777788899999999999998
Done!