Query psy3318
Match_columns 139
No_of_seqs 175 out of 464
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 21:55:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3318.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3318hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vhh_A CG3027-PA; hydrolase; 2 100.0 1.8E-34 6.1E-39 245.5 12.8 126 1-128 1-132 (405)
2 3ivz_A Nitrilase; alpha-beta s 98.9 3.8E-09 1.3E-13 83.0 7.1 50 67-124 1-50 (262)
3 4f4h_A Glutamine dependent NAD 98.9 2.8E-09 9.7E-14 94.4 6.7 51 67-126 6-56 (565)
4 3p8k_A Hydrolase, carbon-nitro 98.8 3.2E-09 1.1E-13 85.0 6.1 52 66-126 19-70 (281)
5 1uf5_A N-carbamyl-D-amino acid 98.8 4.1E-09 1.4E-13 83.7 6.3 55 65-126 1-55 (303)
6 3hkx_A Amidase; alpha-beta-BET 98.8 7.4E-09 2.5E-13 82.9 5.9 53 65-126 18-70 (283)
7 2e11_A Hydrolase; dimethylarse 98.7 1.5E-08 5.2E-13 79.4 5.4 51 66-126 2-52 (266)
8 2w1v_A Nitrilase-2, nitrilase 98.7 2.7E-08 9.1E-13 78.6 6.7 50 66-125 2-51 (276)
9 3n05_A NH(3)-dependent NAD(+) 98.6 3.5E-08 1.2E-12 87.1 6.6 53 65-126 2-54 (590)
10 1f89_A 32.5 kDa protein YLR351 98.6 4.7E-08 1.6E-12 77.5 5.7 49 66-122 9-59 (291)
11 3ilv_A Glutamine-dependent NAD 98.6 8.5E-08 2.9E-12 85.8 6.7 53 65-126 3-55 (634)
12 1ems_A Nitfhit, NIT-fragIle hi 98.5 1.3E-07 4.5E-12 79.6 7.3 51 66-126 13-63 (440)
13 2dyu_A Formamidase; AMIF, CEK, 98.5 1.3E-07 4.6E-12 77.6 7.0 55 67-126 13-69 (334)
14 2uxy_A Aliphatic amidase; nitr 98.5 1.6E-07 5.3E-12 77.6 7.0 57 66-127 11-69 (341)
15 3sdb_A Glutamine-dependent NAD 98.4 1.9E-07 6.4E-12 84.6 5.7 53 65-126 10-62 (680)
16 4f1h_A Tyrosyl-DNA phosphodies 86.6 0.37 1.3E-05 33.9 2.4 20 99-118 25-44 (250)
17 4fva_A 5'-tyrosyl-DNA phosphod 84.6 0.54 1.9E-05 34.0 2.5 22 99-120 35-56 (256)
18 4gz1_A Tyrosyl-DNA phosphodies 83.7 0.6 2.1E-05 33.6 2.4 21 98-118 30-50 (256)
19 2jc4_A Exodeoxyribonuclease II 82.9 0.9 3.1E-05 33.2 3.1 25 98-122 16-40 (256)
20 1gml_A T-complex protein 1 sub 80.4 7.4 0.00025 29.2 7.6 67 49-115 6-85 (178)
21 1ass_A Thermosome; chaperonin, 80.1 7.1 0.00024 28.9 7.3 66 50-115 1-79 (159)
22 1vyb_A ORF2 contains A reverse 79.7 1.2 4.2E-05 32.0 2.8 23 100-122 27-49 (238)
23 3l1w_A Uncharacterized protein 76.5 1.4 4.8E-05 32.5 2.4 15 105-119 32-46 (257)
24 1wdu_A TRAS1 ORF2P; four-layer 76.2 1.6 5.6E-05 32.3 2.7 24 99-122 36-59 (245)
25 1ako_A Exonuclease III; AP-end 76.1 1.1 3.9E-05 32.9 1.8 18 105-122 23-40 (268)
26 3g6s_A Putative endonuclease/e 75.1 1.7 5.8E-05 32.4 2.6 20 100-119 30-49 (267)
27 3mpr_A Putative endonuclease/e 74.9 2.2 7.6E-05 32.8 3.2 22 98-119 33-54 (298)
28 3teb_A Endonuclease/exonucleas 74.0 1.7 6E-05 31.8 2.3 27 90-119 19-45 (266)
29 1zwx_A SMCL, sphingomyelinase- 73.9 1.1 3.8E-05 33.9 1.3 16 104-119 42-57 (301)
30 2jc5_A Exodeoxyribonuclease; h 73.8 2 6.8E-05 31.4 2.6 22 100-121 20-41 (259)
31 2voa_A AF_EXO, XTHA, exodeoxyr 73.6 1.6 5.5E-05 32.0 2.0 22 100-121 19-40 (257)
32 2ddr_A Sphingomyelin phosphodi 70.0 1.5 5E-05 33.2 1.1 16 105-120 42-57 (306)
33 3i41_A Beta-hemolysin; beta to 69.3 1.5 5.3E-05 34.5 1.2 14 106-119 63-76 (317)
34 2ei9_A Non-LTR retrotransposon 69.0 2.6 8.9E-05 32.3 2.4 22 100-121 25-46 (240)
35 2o3h_A DNA-(apurinic or apyrim 67.4 2.6 8.8E-05 31.7 2.0 23 100-122 47-69 (285)
36 4gew_A 5'-tyrosyl-DNA phosphod 66.1 3.2 0.00011 33.8 2.5 24 96-119 138-161 (362)
37 1hd7_A DNA-(apurinic or apyrim 64.0 3.4 0.00012 32.3 2.2 23 100-122 80-102 (318)
38 3g91_A MTH0212, exodeoxyribonu 62.0 3.5 0.00012 30.8 1.9 23 100-122 22-44 (265)
39 4b8c_D Glucose-repressible alc 56.9 5.1 0.00017 35.7 2.3 22 98-119 428-449 (727)
40 3g8r_A Probable spore coat pol 56.4 4.5 0.00015 34.3 1.7 24 92-115 18-46 (350)
41 3ce8_A Putative PII-like nitro 49.8 31 0.0011 24.9 5.2 80 14-115 26-112 (120)
42 3h5o_A Transcriptional regulat 49.6 33 0.0011 26.4 5.6 75 25-114 20-98 (339)
43 3kws_A Putative sugar isomeras 48.7 43 0.0015 25.1 6.1 31 85-115 94-124 (287)
44 3qxb_A Putative xylose isomera 48.6 23 0.00078 27.3 4.6 32 84-115 103-134 (316)
45 3brq_A HTH-type transcriptiona 47.6 27 0.00092 25.6 4.7 52 52-114 4-57 (296)
46 2j63_A AP-endonuclease; base e 47.5 9.2 0.00032 32.9 2.3 22 100-121 171-192 (467)
47 3bdk_A D-mannonate dehydratase 46.2 18 0.00062 30.5 3.9 27 88-114 97-123 (386)
48 1a6d_B Thermosome (beta subuni 43.6 63 0.0022 28.1 7.1 73 46-118 210-295 (543)
49 1vli_A Spore coat polysacchari 42.7 14 0.00048 31.7 2.7 32 92-123 41-76 (385)
50 1a6d_A Thermosome (alpha subun 42.6 62 0.0021 28.3 6.9 74 45-118 208-294 (545)
51 1qtw_A Endonuclease IV; DNA re 41.4 35 0.0012 25.3 4.5 30 85-114 79-108 (285)
52 2a40_B Deoxyribonuclease-1; WA 41.2 15 0.00051 27.5 2.4 13 108-120 31-43 (260)
53 3p9d_A T-complex protein 1 sub 41.1 91 0.0031 27.3 7.7 72 48-119 217-303 (559)
54 2iks_A DNA-binding transcripti 40.9 49 0.0017 24.5 5.3 51 52-114 5-56 (293)
55 3noy_A 4-hydroxy-3-methylbut-2 40.7 38 0.0013 29.1 5.0 44 61-114 12-65 (366)
56 3ngq_A CCR4-NOT transcription 40.5 13 0.00044 31.4 2.1 21 99-119 66-86 (398)
57 3qc0_A Sugar isomerase; TIM ba 40.4 29 0.00098 25.6 3.8 31 85-115 73-103 (275)
58 1tz9_A Mannonate dehydratase; 40.4 28 0.00094 28.0 4.0 26 89-114 89-114 (367)
59 3cqj_A L-ribulose-5-phosphate 39.8 31 0.001 26.1 4.0 31 85-115 98-128 (295)
60 1k77_A EC1530, hypothetical pr 39.3 39 0.0013 24.8 4.4 28 87-114 77-104 (260)
61 2wje_A CPS4B, tyrosine-protein 39.2 32 0.0011 26.1 4.0 33 93-126 22-54 (247)
62 3ayv_A Putative uncharacterize 38.7 41 0.0014 24.8 4.4 31 84-114 65-95 (254)
63 1zco_A 2-dehydro-3-deoxyphosph 37.4 48 0.0017 26.3 5.0 23 93-115 35-57 (262)
64 1nfp_A LUXF gene product; flav 37.3 1E+02 0.0035 22.7 6.5 50 68-122 4-55 (228)
65 1i60_A IOLI protein; beta barr 37.3 63 0.0022 23.6 5.3 28 87-114 76-103 (278)
66 3obe_A Sugar phosphate isomera 36.9 78 0.0027 24.5 6.0 29 87-115 106-134 (305)
67 1xla_A D-xylose isomerase; iso 35.9 67 0.0023 26.1 5.7 30 85-114 106-135 (394)
68 3ngf_A AP endonuclease, family 35.7 45 0.0015 24.9 4.3 28 87-114 85-112 (269)
69 2wqp_A Polysialic acid capsule 35.0 21 0.00073 30.1 2.6 24 92-115 32-55 (349)
70 3dbi_A Sugar-binding transcrip 34.7 85 0.0029 23.9 5.8 76 25-115 19-100 (338)
71 2o20_A Catabolite control prot 34.5 65 0.0022 24.6 5.1 52 51-114 47-99 (332)
72 2x7v_A Probable endonuclease 4 34.3 42 0.0014 24.9 3.9 30 85-114 79-108 (287)
73 2jx3_A Protein DEK; alpha heli 34.2 33 0.0011 25.1 3.2 53 5-61 12-64 (131)
74 3dx5_A Uncharacterized protein 34.2 36 0.0012 25.5 3.5 27 88-114 77-103 (286)
75 3nvt_A 3-deoxy-D-arabino-heptu 34.0 1.4E+02 0.0047 25.2 7.4 33 93-125 154-188 (385)
76 2l9w_A U4/U6 snRNA-associated- 33.6 23 0.00078 26.1 2.2 13 22-34 4-16 (117)
77 3kjx_A Transcriptional regulat 33.0 90 0.0031 23.9 5.8 53 51-114 52-104 (344)
78 3tva_A Xylose isomerase domain 32.7 47 0.0016 24.9 4.0 28 87-114 94-121 (290)
79 3n1e_A Vacuolar protein sortin 31.9 23 0.00078 26.4 2.1 27 6-32 60-86 (141)
80 2zvr_A Uncharacterized protein 31.6 99 0.0034 23.2 5.7 29 85-113 103-131 (290)
81 2qul_A D-tagatose 3-epimerase; 31.6 47 0.0016 24.7 3.8 30 85-114 78-107 (290)
82 1fvp_A Flavoprotein 390, FP390 31.2 95 0.0033 22.7 5.4 31 92-122 23-55 (231)
83 1jye_A Lactose operon represso 31.2 71 0.0024 24.6 4.9 53 51-114 45-97 (349)
84 3iyg_A T-complex protein 1 sub 30.4 1.2E+02 0.004 26.3 6.6 71 48-118 203-286 (529)
85 3huu_A Transcription regulator 30.2 57 0.0019 24.4 4.1 51 52-114 7-63 (305)
86 2hk0_A D-psicose 3-epimerase; 30.1 69 0.0024 24.4 4.6 30 85-114 97-126 (309)
87 3jvd_A Transcriptional regulat 29.9 64 0.0022 24.8 4.4 74 25-114 22-100 (333)
88 3ctp_A Periplasmic binding pro 29.6 82 0.0028 23.9 5.0 52 51-114 44-96 (330)
89 3cs3_A Sugar-binding transcrip 29.6 1.2E+02 0.004 22.2 5.7 41 62-114 3-44 (277)
90 3aq1_B Thermosome subunit; gro 29.5 82 0.0028 27.1 5.4 72 47-118 164-248 (500)
91 1m5w_A Pyridoxal phosphate bio 29.5 12 0.00042 30.5 0.2 23 100-125 140-162 (243)
92 3cny_A Inositol catabolism pro 29.3 58 0.002 24.3 4.0 29 88-116 83-111 (301)
93 1q3q_A Thermosome alpha subuni 29.2 70 0.0024 27.9 5.0 73 46-118 212-297 (548)
94 3l6u_A ABC-type sugar transpor 28.5 92 0.0032 22.8 4.9 41 62-114 3-44 (293)
95 3aal_A Probable endonuclease 4 28.2 57 0.002 24.9 3.9 28 87-114 86-113 (303)
96 3o6c_A PNP synthase, pyridoxin 28.2 14 0.00047 30.5 0.3 21 100-123 137-157 (260)
97 3p9d_H T-complex protein 1 sub 27.9 73 0.0025 28.0 4.9 72 47-118 220-305 (568)
98 1sfu_A 34L protein; protein/Z- 27.9 31 0.0011 23.3 2.0 23 9-32 16-52 (75)
99 3bil_A Probable LACI-family tr 27.3 81 0.0028 24.4 4.6 52 51-114 50-102 (348)
100 2knj_A Microplusin preprotein; 26.8 18 0.00061 25.4 0.6 28 6-33 53-80 (90)
101 2zds_A Putative DNA-binding pr 26.8 53 0.0018 25.1 3.4 27 88-114 104-130 (340)
102 3p9d_D T-complex protein 1 sub 26.7 1.7E+02 0.0057 25.4 6.9 70 48-118 208-292 (528)
103 2qkl_B SPAC19A8.12 protein, SP 26.6 33 0.0011 24.0 2.0 25 8-32 6-37 (95)
104 3l23_A Sugar phosphate isomera 26.5 69 0.0024 24.7 4.1 27 89-115 102-128 (303)
105 4g9p_A 4-hydroxy-3-methylbut-2 26.4 64 0.0022 28.1 4.2 41 63-113 6-56 (406)
106 3nis_A E3 ubiquitin-protein li 26.3 25 0.00085 23.9 1.3 14 115-129 68-81 (82)
107 3e3m_A Transcriptional regulat 26.2 98 0.0034 23.8 4.9 53 51-114 54-106 (355)
108 3ktc_A Xylose isomerase; putat 26.0 65 0.0022 25.1 3.9 30 85-114 97-126 (333)
109 3clk_A Transcription regulator 25.9 1.3E+02 0.0045 22.1 5.4 41 62-114 3-44 (290)
110 2qw5_A Xylose isomerase-like T 25.5 88 0.003 24.2 4.5 28 87-114 101-128 (335)
111 3kke_A LACI family transcripti 25.2 1E+02 0.0035 23.0 4.7 47 57-114 5-51 (303)
112 3k6t_A Female germline-specifi 24.9 32 0.0011 22.5 1.6 33 6-43 26-58 (60)
113 3k4h_A Putative transcriptiona 24.9 1.6E+02 0.0056 21.4 5.7 42 62-114 3-49 (292)
114 3hs3_A Ribose operon repressor 24.3 1.4E+02 0.0048 21.9 5.3 42 61-114 4-47 (277)
115 3ko1_A Chaperonin; 9-fold symm 24.2 1.2E+02 0.0042 26.5 5.7 72 48-119 221-305 (553)
116 3aam_A Endonuclease IV, endoiv 24.2 67 0.0023 23.8 3.5 27 88-114 81-107 (270)
117 3vni_A Xylose isomerase domain 24.2 78 0.0027 23.6 3.9 30 85-114 78-107 (294)
118 3u0h_A Xylose isomerase domain 23.9 71 0.0024 23.5 3.5 26 89-114 78-103 (281)
119 1g1p_A Conotoxin EVIA; three d 23.7 23 0.0008 20.4 0.6 8 120-127 5-12 (33)
120 3c3k_A Alanine racemase; struc 23.6 1.3E+02 0.0046 22.0 5.1 41 62-114 3-44 (285)
121 3egc_A Putative ribose operon 23.6 1.4E+02 0.0047 21.9 5.1 42 62-115 3-45 (291)
122 2y1b_A RCSF protein, putative 23.1 90 0.0031 23.1 3.9 33 96-128 74-107 (128)
123 3hkx_A Amidase; alpha-beta-BET 23.0 57 0.0019 25.3 3.0 24 99-122 172-195 (283)
124 3lqy_A Putative isochorismatas 22.8 1.5E+02 0.0053 21.5 5.2 32 88-119 31-62 (190)
125 1vr4_A Hypothetical protein AP 22.6 1E+02 0.0034 21.4 3.9 23 91-113 56-78 (103)
126 2l6a_A Nacht, LRR and PYD doma 22.5 77 0.0026 22.0 3.3 22 10-32 15-36 (102)
127 2jz7_A Selenium binding protei 22.2 75 0.0026 21.7 3.1 19 95-113 35-53 (81)
128 1muw_A Xylose isomerase; atomi 21.8 84 0.0029 25.3 3.9 30 85-114 106-135 (386)
129 3iyg_E T-complex protein 1 sub 21.7 1.5E+02 0.0053 25.4 5.7 71 49-119 202-285 (515)
130 3i4a_A N(G),N(G)-dimethylargin 21.2 1.4E+02 0.0047 24.1 5.0 39 89-127 62-101 (308)
131 2rgy_A Transcriptional regulat 21.2 1.5E+02 0.0051 21.8 4.9 41 62-114 3-44 (290)
132 1iuq_A Glycerol-3-phosphate ac 21.1 1E+02 0.0036 26.3 4.4 30 88-117 203-232 (367)
133 3e61_A Putative transcriptiona 21.0 1.4E+02 0.0046 21.7 4.6 41 62-114 3-44 (277)
134 3o94_A Nicotinamidase; hydrola 20.9 67 0.0023 24.5 3.0 46 73-118 30-75 (211)
135 3ruv_A Chaperonin, CPN; double 20.7 1.7E+02 0.0059 25.4 5.8 72 48-119 207-291 (543)
136 3hu5_A Isochorismatase family 20.3 71 0.0024 23.7 2.9 43 73-116 16-59 (204)
137 3gk0_A PNP synthase, pyridoxin 20.3 19 0.00065 29.9 -0.3 23 100-125 168-190 (278)
138 3k9c_A Transcriptional regulat 20.1 1.5E+02 0.0052 21.9 4.7 42 61-115 6-48 (289)
No 1
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A
Probab=100.00 E-value=1.8e-34 Score=245.46 Aligned_cols=126 Identities=40% Similarity=0.684 Sum_probs=112.0
Q ss_pred CCCCCCcchHHHHHHcCCChHHHHHHHHHHhCCCC-ccccCCccc-----cCCeeeeeeeccCCCCCCCCCccceEEEEe
Q psy3318 1 MSADEPFESVETILQKYIPEDELKLVNAVLYGEPL-KKLYLPNSK-----SNEFNVVGYKFGAKPESSRPPRLVRVGIIQ 74 (139)
Q Consensus 1 m~~~~~~~sle~~l~~~lp~~~l~ev~riLyG~~~-~~l~lp~~a-----~~~Fel~~y~f~a~~EqlR~pr~VrVGLIQ 74 (139)
|++ .+|+|||++|+||||+++|+||+|||||+++ ++|+||..+ ++||+|+||.|.+.+||+|+++.+|||+||
T Consensus 1 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rVAlvQ 79 (405)
T 2vhh_A 1 MSA-FELKNLNDCLEKHLPPDELKEVKRILYGVEEDQTLELPTSAKDIAEQNGFDIKGYRFTAREEQTRKRRIVRVGAIQ 79 (405)
T ss_dssp ------CCCHHHHHTTTSCHHHHHHHHHHHSSSSSCCBCCCCHHHHHHHHHTTCEEEEEECCCCCCSSSCCCEEEEEEEE
T ss_pred CCc-cccchHHHHHHhcCCHHHHHHHHHHhcCCccCccCCCCHHHHHHhhhcCceEeeeeeccchhhhcCCCCCEEEEEe
Confidence 887 6999999999999999999999999999999 899999987 889999999999999999999999999999
Q ss_pred cccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCCchh
Q psy3318 75 NHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGSQV 128 (139)
Q Consensus 75 ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFCt~E 128 (139)
+.+..++. .|+..++++|++++.++|++|+..||+||||||+|.+||.||.++
T Consensus 80 ~~i~~~~~-~~~~~d~~~nl~~~~~li~~A~~~gadLVVfPE~~l~gy~~~~~~ 132 (405)
T 2vhh_A 80 NSIVIPTT-APIEKQREAIWNKVKTMIKAAAEAGCNIVCTQEAWTMPFAFCTRE 132 (405)
T ss_dssp CCCCSCSS-SCHHHHHHHHHHHHHHHHHHHHHTTCSEEECCTTTTSCSCC----
T ss_pred cccccccc-ccccccHHHHHHHHHHHHHHHHHCCCCEEEcCCcccccccccccc
Confidence 99877655 677889999999999999999999999999999999999888753
No 2
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A
Probab=98.87 E-value=3.8e-09 Score=83.01 Aligned_cols=50 Identities=26% Similarity=0.432 Sum_probs=43.8
Q ss_pred cceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCC
Q psy3318 67 LVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRY 124 (139)
Q Consensus 67 ~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaF 124 (139)
++|||++|+.+. ..++++|++++.++|++|+..||+||||||+|.+.|.|
T Consensus 1 M~rva~~Q~~~~--------~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~~~gy~~ 50 (262)
T 3ivz_A 1 MVKVAYVQMNPQ--------ILEPDKNYSKAEKLIKEASKQGAQLVVLPELFDTGYNF 50 (262)
T ss_dssp -CEEEEEECCCC--------TTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCSCC
T ss_pred CeEEEEEeccCC--------CCCHHHHHHHHHHHHHHHHHCCCCEEEeCCCcccCCCC
Confidence 489999999643 24688999999999999999999999999999999944
No 3
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}
Probab=98.86 E-value=2.8e-09 Score=94.45 Aligned_cols=51 Identities=14% Similarity=0.072 Sum_probs=45.7
Q ss_pred cceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCCc
Q psy3318 67 LVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGS 126 (139)
Q Consensus 67 ~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFCt 126 (139)
++|||++|+. |+..|.++|++++.++|++|+++||+||||||+|.+.| +|.
T Consensus 6 kmKIAlaQln--------~~vGD~~~N~~~i~~~i~~Aa~~GAdLvvfPEL~ltGY-~~~ 56 (565)
T 4f4h_A 6 KTRIALAQLN--------VTVGDFAGNVAKIVAAAQAAHDAGAHFLIAPELALSGY-PPE 56 (565)
T ss_dssp CEEEEEEECC--------CCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCS-CCG
T ss_pred ceEEEEEECC--------CCcccHHHHHHHHHHHHHHHHHCCCcEEECCCCcccCC-ChH
Confidence 3899999994 34456899999999999999999999999999999999 875
No 4
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}
Probab=98.85 E-value=3.2e-09 Score=84.96 Aligned_cols=52 Identities=19% Similarity=0.192 Sum_probs=45.5
Q ss_pred ccceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCCc
Q psy3318 66 RLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGS 126 (139)
Q Consensus 66 r~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFCt 126 (139)
+.+|||++|..+. ..++++|++++.++|++|++.||+||||||+|.+.| ++.
T Consensus 19 ~~~kva~~Q~~~~--------~~d~~~Nl~~~~~~i~~A~~~gadlvvfPE~~l~gy-~~~ 70 (281)
T 3p8k_A 19 SHMKVQIYQLPIV--------FGDSSKNETQITQWFEKNMNAEVDVVVLPEMWNNGY-DLE 70 (281)
T ss_dssp SEEEEEEEECCCC--------TTCHHHHHHHHHHHHHHHCCTTCCEEECCSSTTTTT-CGG
T ss_pred CCcEEEEEeccCC--------cCCHHHHHHHHHHHHHHHHhCCCcEEEcCCCccCCC-Chh
Confidence 4599999999652 245889999999999999999999999999999999 554
No 5
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A
Probab=98.84 E-value=4.1e-09 Score=83.72 Aligned_cols=55 Identities=15% Similarity=0.145 Sum_probs=46.3
Q ss_pred CccceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCCc
Q psy3318 65 PRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGS 126 (139)
Q Consensus 65 pr~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFCt 126 (139)
|+.+|||++|..+... ..++++|++++.++|++|+..||+||||||+|.++| ++.
T Consensus 1 ~~~~~va~~Q~~~~~~------~~d~~~n~~~~~~~i~~a~~~gadlvv~PE~~~~gy-~~~ 55 (303)
T 1uf5_A 1 TRQMILAVGQQGPIAR------AETREQVVVRLLDMLTKAASRGANFIVFPELALTTF-FPR 55 (303)
T ss_dssp CCEEEEEEEEBCCCCT------TCCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTSCC-GGG
T ss_pred CccEEEEEEEecCccc------ccCHHHHHHHHHHHHHHHHhcCCCEEEeccccccCC-Ccc
Confidence 4569999999964320 146889999999999999999999999999999988 653
No 6
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}
Probab=98.77 E-value=7.4e-09 Score=82.92 Aligned_cols=53 Identities=19% Similarity=0.257 Sum_probs=45.8
Q ss_pred CccceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCCc
Q psy3318 65 PRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGS 126 (139)
Q Consensus 65 pr~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFCt 126 (139)
...+|||++|+.+. ..++++|++++.++|++|++.||+||||||+|.+.| .+.
T Consensus 18 ~~~~rva~~Q~~~~--------~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~l~gy-~~~ 70 (283)
T 3hkx_A 18 GSHMRIALMQHTAR--------PLDPQHNLDLIDDAAARASEQGAQLLLTPELFGFGY-VPS 70 (283)
T ss_dssp TEEEEEEEEEBCCC--------TTCHHHHHHHHHHHHHHHHHTTCSEEECCTTGGGCS-CHH
T ss_pred CCccEEEEEeCCCC--------CCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCcccCC-ChH
Confidence 34699999999653 235889999999999999999999999999999988 544
No 7
>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV}
Probab=98.70 E-value=1.5e-08 Score=79.38 Aligned_cols=51 Identities=12% Similarity=0.175 Sum_probs=43.9
Q ss_pred ccceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCCc
Q psy3318 66 RLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGS 126 (139)
Q Consensus 66 r~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFCt 126 (139)
+.+|||++|..+. ..++++|++++.++|++| ..||+||||||+|.++| ++.
T Consensus 2 ~~~kva~~Q~~~~--------~~d~~~n~~~~~~~i~~a-~~gadlvv~PE~~~~gy-~~~ 52 (266)
T 2e11_A 2 HDLRISLVQGSTR--------WHDPAGNRDYYGALLEPL-AGQSDLVILPETFTSGF-SNE 52 (266)
T ss_dssp CCEEEEEEECCCC--------TTCHHHHHHHHHHHHGGG-TTTCSEEECCTTTTTCS-CSG
T ss_pred CccEEEEEeCCCC--------cCCHHHHHHHHHHHHHHh-cCCCCEEECCCCccccC-Chh
Confidence 3489999999653 245889999999999999 89999999999999999 653
No 8
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus}
Probab=98.69 E-value=2.7e-08 Score=78.55 Aligned_cols=50 Identities=24% Similarity=0.400 Sum_probs=43.9
Q ss_pred ccceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCC
Q psy3318 66 RLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYG 125 (139)
Q Consensus 66 r~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFC 125 (139)
+.+|||++|..+. .++++|++++.++|++|++.||+||||||+|.++| .+
T Consensus 2 ~~~~va~vQ~~~~---------~d~~~n~~~~~~~i~~a~~~gadlvv~PE~~~~gy-~~ 51 (276)
T 2w1v_A 2 STFRLALIQLQVS---------SIKSDNLTRACSLVREAAKQGANIVSLPECFNSPY-GT 51 (276)
T ss_dssp CEEEEEEEECCCC---------SCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTSCC-ST
T ss_pred CccEEEEEecccc---------CCHHHHHHHHHHHHHHHHHCCCCEEEcCCCcccCC-CH
Confidence 3589999999642 24889999999999999999999999999999998 44
No 9
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}
Probab=98.64 E-value=3.5e-08 Score=87.14 Aligned_cols=53 Identities=9% Similarity=0.066 Sum_probs=46.6
Q ss_pred CccceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCCc
Q psy3318 65 PRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGS 126 (139)
Q Consensus 65 pr~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFCt 126 (139)
++.+|||++|..+ ...+.++|++++.++|++|++.||+||||||+|.+.| .|.
T Consensus 2 ~~~~rvA~~Q~~~--------~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy-~~~ 54 (590)
T 3n05_A 2 SLQLRLALNQIDS--------TVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGY-PVE 54 (590)
T ss_dssp CEEEEEEEEECCC--------CTTCHHHHHHHHHHHHHHHHTTTCSEEECCTTTTTCS-CCG
T ss_pred CCccEEEEEeCCC--------CCCCHHHHHHHHHHHHHHHHHCCCCEEEcCcccccCC-ChH
Confidence 3569999999954 3346889999999999999999999999999999999 775
No 10
>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1
Probab=98.60 E-value=4.7e-08 Score=77.49 Aligned_cols=49 Identities=18% Similarity=0.373 Sum_probs=43.0
Q ss_pred ccceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHH--HhCCCeEEEccccccCCC
Q psy3318 66 RLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAA--GESGVNVLCLQEAWRRPD 122 (139)
Q Consensus 66 r~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~A--A~~GanIICLQElf~~Py 122 (139)
+.+|||++|..+.. .++++|++++.++|++| +..||+||||||+|.++|
T Consensus 9 ~~~~va~vQ~~~~~--------~d~~~n~~~~~~~i~~a~~~~~gadlvv~PE~~~~g~ 59 (291)
T 1f89_A 9 QKIKVALVQLSGSS--------PDKMANLQRAATFIERAMKEQPDTKLVVLPECFNSPY 59 (291)
T ss_dssp SCEEEEEEECCCCC--------SCHHHHHHHHHHHHHHHHHHCTTEEEEECCTTTTSCS
T ss_pred ccceEEEEeccCCc--------CCHHHHHHHHHHHHHHHhhccCCCeEEEcCCCcccCC
Confidence 35899999996321 35889999999999999 999999999999999998
No 11
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}
Probab=98.56 E-value=8.5e-08 Score=85.81 Aligned_cols=53 Identities=19% Similarity=0.226 Sum_probs=46.2
Q ss_pred CccceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCCc
Q psy3318 65 PRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGS 126 (139)
Q Consensus 65 pr~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFCt 126 (139)
++.+|||++|..+ ...+.++|++++.++|++|++.||+||||||+|.+.| +|.
T Consensus 3 M~~~rVA~~Q~~~--------~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGY-~~~ 55 (634)
T 3ilv_A 3 LSTIRIGGAAVNQ--------TPIDWENNVKNILDAIEEAKNANVEILCLPELCITGY-GCE 55 (634)
T ss_dssp -CEEEEEEEEECC--------CTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCS-CCG
T ss_pred CCCeEEEEEeCCC--------CCCCHHHHHHHHHHHHHHHHHCCCcEEEcCCCccccC-ChH
Confidence 3469999999964 2345889999999999999999999999999999999 775
No 12
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1
Probab=98.55 E-value=1.3e-07 Score=79.61 Aligned_cols=51 Identities=14% Similarity=0.217 Sum_probs=44.4
Q ss_pred ccceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCCc
Q psy3318 66 RLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGS 126 (139)
Q Consensus 66 r~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFCt 126 (139)
+.+|||++|..+. .++++|++++.++|++|++.||+||||||+|.++| ++.
T Consensus 13 ~~~kVa~vQ~~~~---------~d~~~nl~~~~~li~~A~~~gadlvv~PE~~~~~~-~~~ 63 (440)
T 1ems_A 13 GRHFIAVCQMTSD---------NDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFIG-LNK 63 (440)
T ss_dssp SEEEEEEECBCCC---------SCHHHHHHHHHHHHHHHHHTTCSEEEECTTCSCCC-SSH
T ss_pred CCceEEEEecCCC---------CCHHHHHHHHHHHHHHHHHCCCCEEECCCcccccC-cch
Confidence 4699999999653 24889999999999999999999999999999887 553
No 13
>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A
Probab=98.54 E-value=1.3e-07 Score=77.65 Aligned_cols=55 Identities=15% Similarity=0.119 Sum_probs=46.1
Q ss_pred cceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHh--CCCeEEEccccccCCCCCCc
Q psy3318 67 LVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGE--SGVNVLCLQEAWRRPDRYGS 126 (139)
Q Consensus 67 ~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~--~GanIICLQElf~~PyaFCt 126 (139)
.+|||++|..+... +...+.++|++++.++|++|++ .||+||||||+|.+.| ++.
T Consensus 13 ~~~Va~vQ~~i~~~----~~~~d~~~nl~~~~~li~~A~~~~~gadLVVfPE~~l~G~-~~~ 69 (334)
T 2dyu_A 13 GFLVAAIQFPVPIV----NSRKDIDHNIESIIRTLHATKAGYPGVELIIFPEYSTQGL-NTA 69 (334)
T ss_dssp CEEEEEECCBCCCC----CSHHHHHHHHHHHHHHHHHHHHHCTTEEEEECCTTTTTCC-CTT
T ss_pred ccEEEEEecCCccC----CchhhHHHHHHHHHHHHHHHHhcCCCCcEEEcCCCccccC-CCC
Confidence 58999999975322 2356899999999999999998 7999999999999988 443
No 14
>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A
Probab=98.52 E-value=1.6e-07 Score=77.59 Aligned_cols=57 Identities=11% Similarity=0.146 Sum_probs=46.9
Q ss_pred ccceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHh--CCCeEEEccccccCCCCCCch
Q psy3318 66 RLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGE--SGVNVLCLQEAWRRPDRYGSQ 127 (139)
Q Consensus 66 r~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~--~GanIICLQElf~~PyaFCt~ 127 (139)
..+|||++|..+... +...+.++|++++.++|++|++ .||+||||||+|.+.| ++..
T Consensus 11 ~~~kValvQ~~i~~~----~~~~d~~~Nl~~i~~~i~~A~~~~~gadLVVfPE~~l~G~-~~~~ 69 (341)
T 2uxy_A 11 DTVGVAVVNYKMPRL----HTAAEVLDNARKIAEMIVGMKQGLPGMDLVVFPEYSLQGI-MYDP 69 (341)
T ss_dssp TEEEEEEECCBCCBC----CSHHHHHHHHHHHHHHHHHHHHHCTTEEEEECCTTTTTBC-CCSH
T ss_pred CccEEEEEECCcccC----CCccCHHHHHHHHHHHHHHHHhcCCCCcEEEeCCCccccc-CCCH
Confidence 469999999975321 2356899999999999999988 7999999999999888 4443
No 15
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A*
Probab=98.44 E-value=1.9e-07 Score=84.55 Aligned_cols=53 Identities=17% Similarity=0.114 Sum_probs=46.6
Q ss_pred CccceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccccCCCCCCc
Q psy3318 65 PRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGS 126 (139)
Q Consensus 65 pr~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf~~PyaFCt 126 (139)
.+.+|||++|..+. ..+.++|++++.++|++|++.||+||||||+|.+.| .|.
T Consensus 10 ~g~~rVAl~Q~~~~--------~~D~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGY-~~~ 62 (680)
T 3sdb_A 10 HGFVRVAACTHHTT--------IGDPAANAASVLDMARACHDDGAALAVFPELTLSGY-SIE 62 (680)
T ss_dssp GTEEEEEEEECCCC--------TTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCG-GGG
T ss_pred CCCeEEEEEcCCCC--------CCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCcccCC-ChH
Confidence 35699999999642 345889999999999999999999999999999999 775
No 16
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=86.65 E-value=0.37 Score=33.91 Aligned_cols=20 Identities=25% Similarity=0.104 Sum_probs=14.0
Q ss_pred HHHHHHHhCCCeEEEccccc
Q psy3318 99 KLINAAGESGVNVLCLQEAW 118 (139)
Q Consensus 99 ~lI~~AA~~GanIICLQElf 118 (139)
.+++.-....++||||||..
T Consensus 25 ~i~~~i~~~~pDIi~LQEv~ 44 (250)
T 4f1h_A 25 GLCSYLALYTPDVVFLQELI 44 (250)
T ss_dssp HHHHHHHHHCCSEEEEEEEC
T ss_pred HHHHHHHHcCCCEEEEEeCC
Confidence 33444445689999999974
No 17
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=84.59 E-value=0.54 Score=33.96 Aligned_cols=22 Identities=23% Similarity=0.293 Sum_probs=15.3
Q ss_pred HHHHHHHhCCCeEEEccccccC
Q psy3318 99 KLINAAGESGVNVLCLQEAWRR 120 (139)
Q Consensus 99 ~lI~~AA~~GanIICLQElf~~ 120 (139)
.+++.-....++||||||.+..
T Consensus 35 ~i~~~i~~~~pDIi~LQEv~~~ 56 (256)
T 4fva_A 35 AVAHIVKNVNPDILFLQEVVDR 56 (256)
T ss_dssp HHHHHHHHHCCSEEEEEEECST
T ss_pred HHHHHHHHcCCCEEEEEecChh
Confidence 3444444568999999998643
No 18
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=83.69 E-value=0.6 Score=33.60 Aligned_cols=21 Identities=19% Similarity=0.158 Sum_probs=14.6
Q ss_pred HHHHHHHHhCCCeEEEccccc
Q psy3318 98 EKLINAAGESGVNVLCLQEAW 118 (139)
Q Consensus 98 ~~lI~~AA~~GanIICLQElf 118 (139)
..+++.-....++||||||..
T Consensus 30 ~~i~~~i~~~~pDIi~LQEv~ 50 (256)
T 4gz1_A 30 RGVCSCLALYSPDVVFLQEVI 50 (256)
T ss_dssp HHHHHHHHHHCCSEEEEEEEC
T ss_pred HHHHHHHHHcCCCEEEEEcCC
Confidence 334444445689999999974
No 19
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=82.89 E-value=0.9 Score=33.20 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=18.6
Q ss_pred HHHHHHHHhCCCeEEEccccccCCC
Q psy3318 98 EKLINAAGESGVNVLCLQEAWRRPD 122 (139)
Q Consensus 98 ~~lI~~AA~~GanIICLQElf~~Py 122 (139)
..+++.....+++||||||.+....
T Consensus 16 ~~i~~~i~~~~~DIv~LQE~~~~~~ 40 (256)
T 2jc4_A 16 PQVQNLLADNPPDILVLQELKLDQD 40 (256)
T ss_dssp HHHHHHHHSSCCSEEEEECCCSCGG
T ss_pred HHHHHHHHhcCCCEEEEEeeccchh
Confidence 3455555678999999999987643
No 20
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A
Probab=80.41 E-value=7.4 Score=29.22 Aligned_cols=67 Identities=9% Similarity=0.076 Sum_probs=41.4
Q ss_pred eeeeeeccCCCCCCCCCc---cceEEEEecccCCCCCC--C--------CchhhHHHHHHHHHHHHHHHHhCCCeEEEcc
Q psy3318 49 NVVGYKFGAKPESSRPPR---LVRVGIIQNHIGNSTVS--C--------NVPQERSATYDRVEKLINAAGESGVNVLCLQ 115 (139)
Q Consensus 49 el~~y~f~a~~EqlR~pr---~VrVGLIQ~si~~~t~~--a--------pv~~qk~anl~k~~~lI~~AA~~GanIICLQ 115 (139)
=+.|+.|+-....-..|+ ..||++++.+...+.+- + ....-.++-.+.+.++++.-++.|+|||+-|
T Consensus 6 lv~Gvvl~k~~~~~~mpk~i~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nVVl~~ 85 (178)
T 1gml_A 6 VLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVVITE 85 (178)
T ss_dssp EEEEEEESCCCSSTTSCCEEESCCEEEESSCBSCC--------------CHHHHHHHHHHHHHHHHHHHHTTCCSEEEES
T ss_pred EEEEEEEeccccCCCCCcccccceEEEEecccCCccccCccEEEECCHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEEC
Confidence 367888876654433343 46899999987554220 0 0111123334667788888899999998765
No 21
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A
Probab=80.13 E-value=7.1 Score=28.93 Aligned_cols=66 Identities=14% Similarity=0.255 Sum_probs=40.3
Q ss_pred eeeeeccCCCCCCCCCc---cceEEEEecccCCCCC----------CCCchhhHHHHHHHHHHHHHHHHhCCCeEEEcc
Q psy3318 50 VVGYKFGAKPESSRPPR---LVRVGIIQNHIGNSTV----------SCNVPQERSATYDRVEKLINAAGESGVNVLCLQ 115 (139)
Q Consensus 50 l~~y~f~a~~EqlR~pr---~VrVGLIQ~si~~~t~----------~apv~~qk~anl~k~~~lI~~AA~~GanIICLQ 115 (139)
+.|+.|+-...--..|+ ..||++++.+...+.+ ......-.++-.+.+.++++.-++.|+|||+-|
T Consensus 1 i~Gvv~~k~~~~~~mpk~i~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nVVl~~ 79 (159)
T 1ass_A 1 MSGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQ 79 (159)
T ss_dssp CCCEEESCCCSCTTSCSEEEEEEEEEESSCBSCCHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHTTCSEEEES
T ss_pred CceEEEecccCCCCCCcCcCCccEEEEecCcCCcccccceeEEECCHHHHHHHHHHHHHHHHHHhhhhhhCCCeEEEEC
Confidence 45777765544433444 3689999987754311 011111123334567788888899999998765
No 22
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=79.70 E-value=1.2 Score=31.99 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=16.2
Q ss_pred HHHHHHhCCCeEEEccccccCCC
Q psy3318 100 LINAAGESGVNVLCLQEAWRRPD 122 (139)
Q Consensus 100 lI~~AA~~GanIICLQElf~~Py 122 (139)
+.+.....+++||||||.+....
T Consensus 27 ~~~~i~~~~~DIv~LQE~~~~~~ 49 (238)
T 1vyb_A 27 LASWIKSQDPSVCCIQETHLTCR 49 (238)
T ss_dssp HHHHHHHHCCSEEEEECCCCCTT
T ss_pred HHHHHHHcCCCEEEEecccCCCC
Confidence 33334456899999999986543
No 23
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=76.47 E-value=1.4 Score=32.54 Aligned_cols=15 Identities=20% Similarity=0.295 Sum_probs=12.1
Q ss_pred HhCCCeEEEcccccc
Q psy3318 105 GESGVNVLCLQEAWR 119 (139)
Q Consensus 105 A~~GanIICLQElf~ 119 (139)
...+++||||||.+.
T Consensus 32 ~~~~~DIv~LQEv~~ 46 (257)
T 3l1w_A 32 NFHDWSLCCIQEVRP 46 (257)
T ss_dssp HHHCCSEEEEEEECH
T ss_pred HHcCCCEEEEeCCCH
Confidence 344899999999873
No 24
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=76.19 E-value=1.6 Score=32.33 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=16.7
Q ss_pred HHHHHHHhCCCeEEEccccccCCC
Q psy3318 99 KLINAAGESGVNVLCLQEAWRRPD 122 (139)
Q Consensus 99 ~lI~~AA~~GanIICLQElf~~Py 122 (139)
.+++.....+++||||||.+....
T Consensus 36 ~l~~~i~~~~~DIv~lQE~~~~~~ 59 (245)
T 1wdu_A 36 ELAIEAATRKAAIALIQEPYVGGA 59 (245)
T ss_dssp HHHHHHHHHTCSEEEEESCCC---
T ss_pred HHHHHHhhcCCCEEEEEcccccCC
Confidence 455555567999999999987543
No 25
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=76.14 E-value=1.1 Score=32.89 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=14.4
Q ss_pred HhCCCeEEEccccccCCC
Q psy3318 105 GESGVNVLCLQEAWRRPD 122 (139)
Q Consensus 105 A~~GanIICLQElf~~Py 122 (139)
...+++||||||.+....
T Consensus 23 ~~~~~Dii~LQE~~~~~~ 40 (268)
T 1ako_A 23 EKHQPDVIGLQETKVHDD 40 (268)
T ss_dssp HHHCCSEEEEECCCCCGG
T ss_pred HHcCCCEEEEEeccCChh
Confidence 346899999999987643
No 26
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=75.11 E-value=1.7 Score=32.39 Aligned_cols=20 Identities=10% Similarity=0.250 Sum_probs=14.5
Q ss_pred HHHHHHhCCCeEEEcccccc
Q psy3318 100 LINAAGESGVNVLCLQEAWR 119 (139)
Q Consensus 100 lI~~AA~~GanIICLQElf~ 119 (139)
+++.-...+++||||||.+.
T Consensus 30 i~~~i~~~~~DIv~LQEv~~ 49 (267)
T 3g6s_A 30 VCQFIKDHELDIVGMQEVLH 49 (267)
T ss_dssp HHHHHHHTTCSEEEEESBCH
T ss_pred HHHHHHHcCCCEEEEecCCH
Confidence 33334456999999999974
No 27
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=74.87 E-value=2.2 Score=32.82 Aligned_cols=22 Identities=9% Similarity=0.129 Sum_probs=15.9
Q ss_pred HHHHHHHHhCCCeEEEcccccc
Q psy3318 98 EKLINAAGESGVNVLCLQEAWR 119 (139)
Q Consensus 98 ~~lI~~AA~~GanIICLQElf~ 119 (139)
..+++.-...+++||||||.+.
T Consensus 33 ~~i~~~i~~~~~DIv~LQEv~~ 54 (298)
T 3mpr_A 33 PVIAQMVQYHDFDIFGTQECFL 54 (298)
T ss_dssp HHHHHHHHHTTCSEEEEESBCH
T ss_pred HHHHHHHHHcCCCEEEEeCCCH
Confidence 3444444556999999999973
No 28
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=73.99 E-value=1.7 Score=31.81 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEEcccccc
Q psy3318 90 RSATYDRVEKLINAAGESGVNVLCLQEAWR 119 (139)
Q Consensus 90 k~anl~k~~~lI~~AA~~GanIICLQElf~ 119 (139)
....++++.+.|+ ..+++||||||...
T Consensus 19 ~~~~~~~i~~~i~---~~~~DIi~LQEv~~ 45 (266)
T 3teb_A 19 QMEKIDILARTIA---EKQYDVIAMQEVNQ 45 (266)
T ss_dssp HHHHHHHHHHHHH---HHTCSEEEEEEEEE
T ss_pred hhHHHHHHHHHHH---hcCCCEEEEEEccc
Confidence 3445555555554 46899999999954
No 29
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=73.94 E-value=1.1 Score=33.92 Aligned_cols=16 Identities=25% Similarity=0.258 Sum_probs=13.3
Q ss_pred HHhCCCeEEEcccccc
Q psy3318 104 AGESGVNVLCLQEAWR 119 (139)
Q Consensus 104 AA~~GanIICLQElf~ 119 (139)
....+++||||||.+.
T Consensus 42 ~~~~~~DIv~LQEv~~ 57 (301)
T 1zwx_A 42 DYMKNNDVVILNEAFD 57 (301)
T ss_dssp GGGSSCSEEEEEEECS
T ss_pred hccCCCCEEEEecccc
Confidence 3457999999999974
No 30
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=73.79 E-value=2 Score=31.38 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=16.8
Q ss_pred HHHHHHhCCCeEEEccccccCC
Q psy3318 100 LINAAGESGVNVLCLQEAWRRP 121 (139)
Q Consensus 100 lI~~AA~~GanIICLQElf~~P 121 (139)
+++.-...+++||||||.+...
T Consensus 20 i~~~i~~~~~DIi~LQE~~~~~ 41 (259)
T 2jc5_A 20 FYEYIAASGADIVCVQELKAQE 41 (259)
T ss_dssp HHHHHHHTTCSEEEEECCCCCG
T ss_pred HHHHHHhcCCCEEEEEEecchh
Confidence 4444456799999999998764
No 31
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=73.59 E-value=1.6 Score=32.05 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=15.8
Q ss_pred HHHHHHhCCCeEEEccccccCC
Q psy3318 100 LINAAGESGVNVLCLQEAWRRP 121 (139)
Q Consensus 100 lI~~AA~~GanIICLQElf~~P 121 (139)
+++.-...+++||||||.+...
T Consensus 19 i~~~i~~~~~Dii~lQE~~~~~ 40 (257)
T 2voa_A 19 VIPWLKENKPDILCMQETKVEN 40 (257)
T ss_dssp HHHHHHHHCCSEEEEECCCCCG
T ss_pred HHHHHhhcCCCEEEEEEeecch
Confidence 3333345689999999998653
No 32
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=70.02 E-value=1.5 Score=33.24 Aligned_cols=16 Identities=19% Similarity=0.223 Sum_probs=13.1
Q ss_pred HhCCCeEEEccccccC
Q psy3318 105 GESGVNVLCLQEAWRR 120 (139)
Q Consensus 105 A~~GanIICLQElf~~ 120 (139)
...+++||||||.+..
T Consensus 42 ~~~~~DIv~LQEv~~~ 57 (306)
T 2ddr_A 42 YIKNQDVVILNEVFDN 57 (306)
T ss_dssp TTCSCSEEEEEEECCH
T ss_pred hccCCCEEEEEeecCH
Confidence 4569999999999753
No 33
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=69.31 E-value=1.5 Score=34.48 Aligned_cols=14 Identities=21% Similarity=0.332 Sum_probs=12.2
Q ss_pred hCCCeEEEcccccc
Q psy3318 106 ESGVNVLCLQEAWR 119 (139)
Q Consensus 106 ~~GanIICLQElf~ 119 (139)
..+++||||||.|.
T Consensus 63 ~~~pDIv~LQEv~~ 76 (317)
T 3i41_A 63 IKNNDVVIFNEAFD 76 (317)
T ss_dssp TSSCSEEEEEEECS
T ss_pred ccCCCEEEEEeecc
Confidence 47999999999974
No 34
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=69.01 E-value=2.6 Score=32.26 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=16.9
Q ss_pred HHHHHHhCCCeEEEccccccCC
Q psy3318 100 LINAAGESGVNVLCLQEAWRRP 121 (139)
Q Consensus 100 lI~~AA~~GanIICLQElf~~P 121 (139)
+.+...+.+++||||||.+..+
T Consensus 25 l~~~l~~~~~DIl~LQEt~~~~ 46 (240)
T 2ei9_A 25 LPSIARDLGLDIVLVQEQYSMV 46 (240)
T ss_dssp HHHHHHHHTCSEEEEESCCTTS
T ss_pred HHHHHHHcCCCEEEeecceEcC
Confidence 4555556799999999998654
No 35
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=67.39 E-value=2.6 Score=31.70 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=16.9
Q ss_pred HHHHHHhCCCeEEEccccccCCC
Q psy3318 100 LINAAGESGVNVLCLQEAWRRPD 122 (139)
Q Consensus 100 lI~~AA~~GanIICLQElf~~Py 122 (139)
+++.....+++||||||.+....
T Consensus 47 i~~~i~~~~~DIi~LQE~~~~~~ 69 (285)
T 2o3h_A 47 GLDWVKEEAPDILCLQETKCSEN 69 (285)
T ss_dssp HHHHHHHHCCSEEEEECCCCCTT
T ss_pred HHHHHHhcCCCEEEEEEeecchh
Confidence 34444456999999999998754
No 36
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=66.11 E-value=3.2 Score=33.85 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhCCCeEEEcccccc
Q psy3318 96 RVEKLINAAGESGVNVLCLQEAWR 119 (139)
Q Consensus 96 k~~~lI~~AA~~GanIICLQElf~ 119 (139)
|...+++.-....++||||||...
T Consensus 138 R~~~I~~~I~~~~PDIV~LQEv~~ 161 (362)
T 4gew_A 138 RMKAVAHIVKNVNPDILFLQEVVD 161 (362)
T ss_dssp HHHHHHHHHHHHCCSEEEEEEECS
T ss_pred HHHHHHHHHHHcCCCEEEEEcCCh
Confidence 344444444567899999999854
No 37
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=64.04 E-value=3.4 Score=32.26 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=16.5
Q ss_pred HHHHHHhCCCeEEEccccccCCC
Q psy3318 100 LINAAGESGVNVLCLQEAWRRPD 122 (139)
Q Consensus 100 lI~~AA~~GanIICLQElf~~Py 122 (139)
+++.....+++||||||.+....
T Consensus 80 i~~~i~~~~~DIi~LQE~~~~~~ 102 (318)
T 1hd7_A 80 GLDWVKEEAPDILCLQETKCSEN 102 (318)
T ss_dssp HHHHHHHHCCSEEEEECCCCCC-
T ss_pred HHHHHHhhCCCEEEEEEccCchh
Confidence 34444466999999999987643
No 38
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=62.03 E-value=3.5 Score=30.78 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=17.5
Q ss_pred HHHHHHhCCCeEEEccccccCCC
Q psy3318 100 LINAAGESGVNVLCLQEAWRRPD 122 (139)
Q Consensus 100 lI~~AA~~GanIICLQElf~~Py 122 (139)
+++......++||||||.+....
T Consensus 22 l~~~i~~~~~DIv~LQEt~~~~~ 44 (265)
T 3g91_A 22 FLKWFMEEKPDILCLQEIKAAPE 44 (265)
T ss_dssp HHHHHHHHCCSEEEEECCCSCGG
T ss_pred HHHHHHhcCCCEEEEEecccccc
Confidence 45555567999999999987654
No 39
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=56.91 E-value=5.1 Score=35.67 Aligned_cols=22 Identities=32% Similarity=0.370 Sum_probs=16.0
Q ss_pred HHHHHHHHhCCCeEEEcccccc
Q psy3318 98 EKLINAAGESGVNVLCLQEAWR 119 (139)
Q Consensus 98 ~~lI~~AA~~GanIICLQElf~ 119 (139)
..++++-...+++||||||++.
T Consensus 428 ~~i~~~I~~~~pDIIcLQEV~~ 449 (727)
T 4b8c_D 428 NKLKEQILSYDSDLLCLQEVES 449 (727)
T ss_dssp HHHHHHHHHSCCSSEEEC-CCH
T ss_pred hHHHHHHHHcCCCeEEEEecCH
Confidence 3455555678999999999985
No 40
>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}
Probab=56.38 E-value=4.5 Score=34.32 Aligned_cols=24 Identities=29% Similarity=0.166 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHhCCCe-----EEEcc
Q psy3318 92 ATYDRVEKLINAAGESGVN-----VLCLQ 115 (139)
Q Consensus 92 anl~k~~~lI~~AA~~Gan-----IICLQ 115 (139)
..++++.+||++|+++||+ .|-||
T Consensus 18 Gdle~Ak~lI~~A~~aGad~~~d~avKfQ 46 (350)
T 3g8r_A 18 GNVEHGVALIRAIRESCQGFDFDFGFKLQ 46 (350)
T ss_dssp TCSHHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred CcHHHHHHHHHHHHHhCCcccCCeeEEcc
Confidence 4589999999999999997 99998
No 41
>3ce8_A Putative PII-like nitrogen regulatory protein; structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE; 2.40A {Shewanella baltica}
Probab=49.79 E-value=31 Score=24.90 Aligned_cols=80 Identities=13% Similarity=0.058 Sum_probs=45.3
Q ss_pred HHcCCChHHHHHHHHHHhCC-CCccccCCccccCCeeeeeeeccCC----CCCCCCC-ccceEEEEecccCCCCCCCCch
Q psy3318 14 LQKYIPEDELKLVNAVLYGE-PLKKLYLPNSKSNEFNVVGYKFGAK----PESSRPP-RLVRVGIIQNHIGNSTVSCNVP 87 (139)
Q Consensus 14 l~~~lp~~~l~ev~riLyG~-~~~~l~lp~~a~~~Fel~~y~f~a~----~EqlR~p-r~VrVGLIQ~si~~~t~~apv~ 87 (139)
|+-.++|..+.+|+..|... ...-+.+ .|++||.-... .|+.|-. ..+||=++=..
T Consensus 26 I~aIIrP~kld~V~daL~~~~gi~G~Tv-------seV~G~Grqkg~~S~~E~yrG~epKvkiEivv~d----------- 87 (120)
T 3ce8_A 26 LVLIAQNDIKDDIVDTLIELEFLSGFSL-------GNICGFSREHSHFNIKEQVEGYREFCKFEIMHPA----------- 87 (120)
T ss_dssp EEEEEEGGGHHHHHHHHTTCTTCCCCEE-------EEEEEEECC-----------EEEEEEEEEEEEEG-----------
T ss_pred EEEEeCHHHHHHHHHHHHhCCCCCcEEE-------EeeEEeCCCCCCCCceeEEecCCceEEEEEEECH-----------
Confidence 55678899999999999875 5544544 57777775432 5666633 23555544331
Q ss_pred hhHHHHHHHHHHHHHHHHhCCC-eEEEcc
Q psy3318 88 QERSATYDRVEKLINAAGESGV-NVLCLQ 115 (139)
Q Consensus 88 ~qk~anl~k~~~lI~~AA~~Ga-nIICLQ 115 (139)
+..+++.+.|.++|.-|- +|.++|
T Consensus 88 ----~~ve~vv~aI~~~a~tg~IKIfV~p 112 (120)
T 3ce8_A 88 ----AQQAALLTALALVCKHNPCRYWIMP 112 (120)
T ss_dssp ----GGHHHHHHHHHHHTTTSCCEEEEEE
T ss_pred ----HHHHHHHHHHHHHcCCCCEEEEEEE
Confidence 245566667777765544 555544
No 42
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=49.57 E-value=33 Score=26.36 Aligned_cols=75 Identities=12% Similarity=0.140 Sum_probs=21.9
Q ss_pred HHHHHHhCCCCccccCCccc----cCCeeeeeeeccCCCCCCCCCccceEEEEecccCCCCCCCCchhhHHHHHHHHHHH
Q psy3318 25 LVNAVLYGEPLKKLYLPNSK----SNEFNVVGYKFGAKPESSRPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKL 100 (139)
Q Consensus 25 ev~riLyG~~~~~l~lp~~a----~~~Fel~~y~f~a~~EqlR~pr~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~l 100 (139)
-|.|+|-|++ .++++. ..--+=-||.-....-.||..+.-+||+|-.....| +- .+-+..+
T Consensus 20 TVSr~Ln~~~----~vs~~tr~rV~~~~~~lgY~pn~~a~~l~~~~~~~Igvi~~~~~~~-----~~------~~~~~gi 84 (339)
T 3h5o_A 20 TVSRVLNQPQ----QVSEQLREKVMQAVDALAYVPSRSASTLASAKSRTVLVLIPSLANT-----VF------LETLTGI 84 (339)
T ss_dssp -----------------------------------------------CEEEEEESCSTTC-----TT------HHHHHHH
T ss_pred HHHHHHcCCC----CCCHHHHHHHHHHHHHhCCCcCHHHHhhhcCCCCEEEEEeCCCCCH-----HH------HHHHHHH
Confidence 4777777743 122222 112233477766666677877878999997754333 21 1223345
Q ss_pred HHHHHhCCCeEEEc
Q psy3318 101 INAAGESGVNVLCL 114 (139)
Q Consensus 101 I~~AA~~GanIICL 114 (139)
-++|.+.|.+++++
T Consensus 85 ~~~a~~~g~~~~~~ 98 (339)
T 3h5o_A 85 ETVLDAAGYQMLIG 98 (339)
T ss_dssp HHHHHHTTCEEEEE
T ss_pred HHHHHHCCCEEEEE
Confidence 55666779888754
No 43
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=48.67 E-value=43 Score=25.14 Aligned_cols=31 Identities=29% Similarity=0.422 Sum_probs=26.4
Q ss_pred CchhhHHHHHHHHHHHHHHHHhCCCeEEEcc
Q psy3318 85 NVPQERSATYDRVEKLINAAGESGVNVLCLQ 115 (139)
Q Consensus 85 pv~~qk~anl~k~~~lI~~AA~~GanIICLQ 115 (139)
+-.+.+++.++...+.|+.|+..|+..|++.
T Consensus 94 ~d~~~r~~~~~~~~~~i~~a~~lGa~~v~~~ 124 (287)
T 3kws_A 94 TDPAIRKECMDTMKEIIAAAGELGSTGVIIV 124 (287)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTTCSEEEEC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence 4456788899999999999999999988763
No 44
>3qxb_A Putative xylose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.90A {Rhodospirillum rubrum}
Probab=48.65 E-value=23 Score=27.35 Aligned_cols=32 Identities=13% Similarity=0.186 Sum_probs=27.4
Q ss_pred CCchhhHHHHHHHHHHHHHHHHhCCCeEEEcc
Q psy3318 84 CNVPQERSATYDRVEKLINAAGESGVNVLCLQ 115 (139)
Q Consensus 84 apv~~qk~anl~k~~~lI~~AA~~GanIICLQ 115 (139)
.|-.+.+++.++...+.|+.|+..|+..|+.+
T Consensus 103 ~~d~~~r~~~~~~~~~~i~~A~~lGa~~v~~~ 134 (316)
T 3qxb_A 103 APTLELQSLGYQHLKRAIDMTAAMEVPATGMP 134 (316)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEec
Confidence 45567788899999999999999999999864
No 45
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=47.62 E-value=27 Score=25.64 Aligned_cols=52 Identities=13% Similarity=0.113 Sum_probs=20.4
Q ss_pred eeeccCCCCCCCCCccceEEEEecc--cCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEc
Q psy3318 52 GYKFGAKPESSRPPRLVRVGIIQNH--IGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCL 114 (139)
Q Consensus 52 ~y~f~a~~EqlR~pr~VrVGLIQ~s--i~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICL 114 (139)
||.-.+..-.||..+..+||+|-.. .. .|+. ..-...+-+.|.+.|.+++++
T Consensus 4 gY~pn~~ar~L~~~~~~~Ig~i~~~~~~~-----~~~~------~~~~~gi~~~~~~~g~~~~~~ 57 (296)
T 3brq_A 4 GYRPNLLARNLSAKSTQTLGLVVTNTLYH-----GIYF------SELLFHAARMAEEKGRQLLLA 57 (296)
T ss_dssp ---------------CCEEEEEECGGGCC-------CH------HHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCccHHHHHhhcCCCceEEEEeCCcccC-----CchH------HHHHHHHHHHHHHCCCEEEEE
Confidence 6776666667888888899999764 32 2221 112223344455679888754
No 46
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=47.49 E-value=9.2 Score=32.88 Aligned_cols=22 Identities=32% Similarity=0.299 Sum_probs=16.7
Q ss_pred HHHHHHhCCCeEEEccccccCC
Q psy3318 100 LINAAGESGVNVLCLQEAWRRP 121 (139)
Q Consensus 100 lI~~AA~~GanIICLQElf~~P 121 (139)
+.+.-...+++||||||.+...
T Consensus 171 i~~~I~~~~pDIVcLQEtk~~~ 192 (467)
T 2j63_A 171 LRAFMEAEKPDVLCLQETKLNV 192 (467)
T ss_dssp HHHHHHHHCCSEEEEECCCCCT
T ss_pred HHHHHHHcCCCEEEEEecccch
Confidence 4444456689999999998754
No 47
>3bdk_A D-mannonate dehydratase; xylose isomerase-like TIM barrel, lyase; HET: DNO; 2.50A {Streptococcus suis} PDB: 3ban_A* 3dbn_A* 3fvm_A
Probab=46.22 E-value=18 Score=30.51 Aligned_cols=27 Identities=26% Similarity=0.553 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCeEEEc
Q psy3318 88 QERSATYDRVEKLINAAGESGVNVLCL 114 (139)
Q Consensus 88 ~qk~anl~k~~~lI~~AA~~GanIICL 114 (139)
..+++.++..++.|+.|++.|+.+||.
T Consensus 97 ~~r~~~ie~~k~~i~~aa~lGi~~v~~ 123 (386)
T 3bdk_A 97 PNRDALIENYKTSIRNVGAAGIPVVCY 123 (386)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 458899999999999999999999997
No 48
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B
Probab=43.57 E-value=63 Score=28.15 Aligned_cols=73 Identities=8% Similarity=0.132 Sum_probs=44.4
Q ss_pred CCeeeeeeeccCCCCCCCCCc---cceEEEEecccCCCCC----------CCCchhhHHHHHHHHHHHHHHHHhCCCeEE
Q psy3318 46 NEFNVVGYKFGAKPESSRPPR---LVRVGIIQNHIGNSTV----------SCNVPQERSATYDRVEKLINAAGESGVNVL 112 (139)
Q Consensus 46 ~~Fel~~y~f~a~~EqlR~pr---~VrVGLIQ~si~~~t~----------~apv~~qk~anl~k~~~lI~~AA~~GanII 112 (139)
..+=+.|+.|+-....-..|+ ..||.++..+...+.+ ...+..-.++-.+.+..+++..++.|++||
T Consensus 210 ds~lv~G~v~dk~~~~~~m~~~ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lv 289 (543)
T 1a6d_B 210 DTQLINGIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVV 289 (543)
T ss_dssp GCEEESEEEESCCCSSTTSCSEEEEEEEEEESSCBSCCCCSSEEEECCCSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred ceeEEccEEEecCCCCCCCcceecCCeEEEEecccccccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEE
Confidence 345567888876544222233 3689999987433211 011122223334566788899999999999
Q ss_pred Eccccc
Q psy3318 113 CLQEAW 118 (139)
Q Consensus 113 CLQElf 118 (139)
+.++-.
T Consensus 290 i~~~~I 295 (543)
T 1a6d_B 290 ITQKGI 295 (543)
T ss_dssp EESSCB
T ss_pred EECCCc
Confidence 988754
No 49
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=42.71 E-value=14 Score=31.66 Aligned_cols=32 Identities=28% Similarity=0.413 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEcc----ccccCCCC
Q psy3318 92 ATYDRVEKLINAAGESGVNVLCLQ----EAWRRPDR 123 (139)
Q Consensus 92 anl~k~~~lI~~AA~~GanIICLQ----Elf~~Pya 123 (139)
..++++.++|++|+++||+.|=|| +..-+||+
T Consensus 41 Gsle~A~~li~~Ak~aGAdavKfQ~~k~~tl~s~~~ 76 (385)
T 1vli_A 41 GKLDQAFALIDAAAEAGADAVKFQMFQADRMYQKDP 76 (385)
T ss_dssp TCHHHHHHHHHHHHHHTCSEEEECCBCGGGGTSCCC
T ss_pred ccHHHHHHHHHHHHHhCCCEEeeeeeccCcccCcch
Confidence 458999999999999999999997 22225775
No 50
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A*
Probab=42.60 E-value=62 Score=28.26 Aligned_cols=74 Identities=12% Similarity=0.221 Sum_probs=44.7
Q ss_pred cCCeeeeeeeccCCCCCCCCCc---cceEEEEecccCCCCCC----------CCchhhHHHHHHHHHHHHHHHHhCCCeE
Q psy3318 45 SNEFNVVGYKFGAKPESSRPPR---LVRVGIIQNHIGNSTVS----------CNVPQERSATYDRVEKLINAAGESGVNV 111 (139)
Q Consensus 45 ~~~Fel~~y~f~a~~EqlR~pr---~VrVGLIQ~si~~~t~~----------apv~~qk~anl~k~~~lI~~AA~~GanI 111 (139)
+..+=+.|+.|+-....-..|+ ..||.++..+...+.+. ..+..-.++-.+.+..+++..++.|++|
T Consensus 208 ~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~l 287 (545)
T 1a6d_A 208 NDTQFISGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANV 287 (545)
T ss_dssp TTCEEESEEEESCCCSCTTSCSEEEEEEEEEECSCBSCCCCSSCCEEEECSTTHHHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred eeeEEEeeEEEeccCCCCCCcceecCCEEEEEecCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 3345567888876543222233 36899999874332110 1111222333455678889999999999
Q ss_pred EEccccc
Q psy3318 112 LCLQEAW 118 (139)
Q Consensus 112 ICLQElf 118 (139)
|+.++-.
T Consensus 288 vi~~~~I 294 (545)
T 1a6d_A 288 VLCQKGI 294 (545)
T ss_dssp EEESSCB
T ss_pred EEECCCc
Confidence 9988754
No 51
>1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} SCOP: c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A*
Probab=41.43 E-value=35 Score=25.32 Aligned_cols=30 Identities=13% Similarity=0.202 Sum_probs=25.7
Q ss_pred CchhhHHHHHHHHHHHHHHHHhCCCeEEEc
Q psy3318 85 NVPQERSATYDRVEKLINAAGESGVNVLCL 114 (139)
Q Consensus 85 pv~~qk~anl~k~~~lI~~AA~~GanIICL 114 (139)
|-.+.+++.++.....|+.|+..|+..|++
T Consensus 79 ~~~~~r~~~~~~~~~~i~~A~~lGa~~v~~ 108 (285)
T 1qtw_A 79 PVTEALEKSRDAFIDEMQRCEQLGLSLLNF 108 (285)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 345668888999999999999999999875
No 52
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=41.25 E-value=15 Score=27.51 Aligned_cols=13 Identities=15% Similarity=0.274 Sum_probs=11.3
Q ss_pred CCeEEEccccccC
Q psy3318 108 GVNVLCLQEAWRR 120 (139)
Q Consensus 108 GanIICLQElf~~ 120 (139)
+++||||||.-+.
T Consensus 31 ~~DIv~LQEv~~~ 43 (260)
T 2a40_B 31 RYDIVLIQEVRDS 43 (260)
T ss_dssp TCSEEEEEEECCT
T ss_pred cCCEEEEEEEEcC
Confidence 7999999999763
No 53
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a*
Probab=41.07 E-value=91 Score=27.32 Aligned_cols=72 Identities=13% Similarity=0.163 Sum_probs=43.6
Q ss_pred eeeeeeeccCCC--CCCC-CCc--cceEEEEecccCCCCC----------CCCchhhHHHHHHHHHHHHHHHHhCCCeEE
Q psy3318 48 FNVVGYKFGAKP--ESSR-PPR--LVRVGIIQNHIGNSTV----------SCNVPQERSATYDRVEKLINAAGESGVNVL 112 (139)
Q Consensus 48 Fel~~y~f~a~~--EqlR-~pr--~VrVGLIQ~si~~~t~----------~apv~~qk~anl~k~~~lI~~AA~~GanII 112 (139)
.=+.|+.|+-.. ..+. .-. ..||.++..++..+.. ......-.++-.+.+..+++..++.|++||
T Consensus 217 ~lv~G~v~dk~~~~~~m~~~ie~~n~kIll~~~~Le~~k~e~~~~v~is~~~~l~~i~~~E~~~l~~~le~I~~~g~~lv 296 (559)
T 3p9d_A 217 LLVPGYALNCTVASQAMPKRIAGGNVKIACLDLNLQKARMAMGVQINIDDPEQLEQIRKREAGIVLERVKKIIDAGAQVV 296 (559)
T ss_dssp BCCSEECCCCCCSSTTSCSEECSSSBCEEEETTCCSCCCCCTTCCEEECSSSCHHHHHHHHHHHHHHHHHHHHTTCCSEE
T ss_pred eEeccEEEeecccCCCcceeeccCCceEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCEE
Confidence 446888886432 2222 112 5679999987643311 011222233334667888999999999999
Q ss_pred Ecccccc
Q psy3318 113 CLQEAWR 119 (139)
Q Consensus 113 CLQElf~ 119 (139)
+.++-..
T Consensus 297 I~~~~I~ 303 (559)
T 3p9d_A 297 LTTKGID 303 (559)
T ss_dssp EESSCCC
T ss_pred EEcCCCC
Confidence 9887553
No 54
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=40.91 E-value=49 Score=24.53 Aligned_cols=51 Identities=24% Similarity=0.398 Sum_probs=22.2
Q ss_pred eeeccCCCCCCCCCccceEEEEecccCCCCCCCCchhhHHHHHHHHHH-HHHHHHhCCCeEEEc
Q psy3318 52 GYKFGAKPESSRPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEK-LINAAGESGVNVLCL 114 (139)
Q Consensus 52 ~y~f~a~~EqlR~pr~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~-lI~~AA~~GanIICL 114 (139)
||.-....-.||..+.-+||+|-..... | -+..+.. +-+.|.+.|.+++++
T Consensus 5 gY~pn~~Ar~L~~~~~~~Ig~i~~~~~~-----~-------~~~~~~~gi~~~~~~~g~~~~~~ 56 (293)
T 2iks_A 5 NYHPNAVAAGLRAGRTRSIGLVIPDLEN-----T-------SYTRIANYLERQARQRGYQLLIA 56 (293)
T ss_dssp -------------CCCCEEEEEESCSCS-----H-------HHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCccCHHHHHhhcCCCcEEEEEeCCCcC-----c-------HHHHHHHHHHHHHHHCCCEEEEE
Confidence 6765555566787788899999764321 1 2333333 334455668888754
No 55
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=40.68 E-value=38 Score=29.15 Aligned_cols=44 Identities=25% Similarity=0.502 Sum_probs=28.5
Q ss_pred CCCCCccceEEE----------EecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEc
Q psy3318 61 SSRPPRLVRVGI----------IQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCL 114 (139)
Q Consensus 61 qlR~pr~VrVGL----------IQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICL 114 (139)
|-|+.|.|+||= ||.-+..+ +.+.++..+++..+. ++|++||=+
T Consensus 12 ~rr~tr~v~VG~v~IGG~~Pi~VQSMtnt~------T~D~~atv~Qi~~l~----~aG~diVRv 65 (366)
T 3noy_A 12 QKRKTRQIRVGNVKIGGDAPIVVQSMTSTK------THDVEATLNQIKRLY----EAGCEIVRV 65 (366)
T ss_dssp CCCCCCCEEETTEEESTTSCCEEEEECCSC------TTCHHHHHHHHHHHH----HTTCCEEEE
T ss_pred eeccceEEEECCEEEcCCCcEEEEEecCCC------CcCHHHHHHHHHHHH----HcCCCEEEe
Confidence 446777777764 45544333 346777777666655 889999843
No 56
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=40.53 E-value=13 Score=31.39 Aligned_cols=21 Identities=14% Similarity=0.261 Sum_probs=15.3
Q ss_pred HHHHHHHhCCCeEEEcccccc
Q psy3318 99 KLINAAGESGVNVLCLQEAWR 119 (139)
Q Consensus 99 ~lI~~AA~~GanIICLQElf~ 119 (139)
.+++.-....++||||||...
T Consensus 66 ~i~~~i~~~~pDIi~lQEv~~ 86 (398)
T 3ngq_A 66 GIMEEIVNCDADIISLQEVET 86 (398)
T ss_dssp HHHHHHHHHCCSEEEEEEEEH
T ss_pred HHHHHHHhcCCCEEEEecccH
Confidence 344444456899999999975
No 57
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=40.40 E-value=29 Score=25.59 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=26.1
Q ss_pred CchhhHHHHHHHHHHHHHHHHhCCCeEEEcc
Q psy3318 85 NVPQERSATYDRVEKLINAAGESGVNVLCLQ 115 (139)
Q Consensus 85 pv~~qk~anl~k~~~lI~~AA~~GanIICLQ 115 (139)
|-.+.+++.++...+.|+.|+..|+..|++.
T Consensus 73 ~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~ 103 (275)
T 3qc0_A 73 PDASGREKAIDDNRRAVDEAAELGADCLVLV 103 (275)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTTCSCEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 3456788889999999999999999988764
No 58
>1tz9_A Mannonate dehydratase; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium; 2.90A {Enterococcus faecalis} SCOP: c.1.15.6
Probab=40.37 E-value=28 Score=27.97 Aligned_cols=26 Identities=19% Similarity=0.554 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHHhCCCeEEEc
Q psy3318 89 ERSATYDRVEKLINAAGESGVNVLCL 114 (139)
Q Consensus 89 qk~anl~k~~~lI~~AA~~GanIICL 114 (139)
.+++.++...+.|+.|+..|+++||+
T Consensus 89 ~r~~~i~~~~~~i~~a~~lG~~~v~~ 114 (367)
T 1tz9_A 89 QRDHYIDNYRQTLRNLGKCGISLVCY 114 (367)
T ss_dssp THHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 47788999999999999999999998
No 59
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=39.83 E-value=31 Score=26.10 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=27.0
Q ss_pred CchhhHHHHHHHHHHHHHHHHhCCCeEEEcc
Q psy3318 85 NVPQERSATYDRVEKLINAAGESGVNVLCLQ 115 (139)
Q Consensus 85 pv~~qk~anl~k~~~lI~~AA~~GanIICLQ 115 (139)
|-.+.+++.++.....|+.|+..|+..|+++
T Consensus 98 ~d~~~r~~~~~~~~~~i~~A~~lG~~~v~~~ 128 (295)
T 3cqj_A 98 EDDAVRAQGLEIMRKAIQFAQDVGIRVIQLA 128 (295)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHTCCEEEEC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEC
Confidence 3456788889999999999999999999885
No 60
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5
Probab=39.34 E-value=39 Score=24.76 Aligned_cols=28 Identities=7% Similarity=0.086 Sum_probs=24.7
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCeEEEc
Q psy3318 87 PQERSATYDRVEKLINAAGESGVNVLCL 114 (139)
Q Consensus 87 ~~qk~anl~k~~~lI~~AA~~GanIICL 114 (139)
.+.+++.++.....|+.|+..|+..|++
T Consensus 77 ~~~~~~~~~~~~~~i~~a~~lG~~~v~~ 104 (260)
T 1k77_A 77 PGREHEAHADIDLALEYALALNCEQVHV 104 (260)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCSEEEC
T ss_pred hhHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 4567888999999999999999999876
No 61
>2wje_A CPS4B, tyrosine-protein phosphatase CPSB; capsule biogenesis/degradation, manganese, hydrolase, exopolysaccharide synthesis; 1.90A {Streptococcus pneumoniae} PDB: 2wjd_A 2wjf_A 3qy8_A
Probab=39.20 E-value=32 Score=26.14 Aligned_cols=33 Identities=12% Similarity=0.246 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHhCCCeEEEccccccCCCCCCc
Q psy3318 93 TYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGS 126 (139)
Q Consensus 93 nl~k~~~lI~~AA~~GanIICLQElf~~PyaFCt 126 (139)
.++.+.++++.|.+.|.+.||+-+-...++ |..
T Consensus 22 ~~e~~~e~i~~A~~~Gi~~i~~TdH~~~~~-~~~ 54 (247)
T 2wje_A 22 SREESKALLAESYRQGVRTIVSTSHRRKGM-FET 54 (247)
T ss_dssp SHHHHHHHHHHHHHTTEEEEECCCEEBTTT-BCC
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCC-CCC
Confidence 456777899999999999999999887655 553
No 62
>3ayv_A Putative uncharacterized protein TTHB071; structural genomics, riken structural genomics/proteomics in RSGI, TIM barrel, unknown function; 1.85A {Thermus thermophilus} PDB: 3ayt_A
Probab=38.65 E-value=41 Score=24.79 Aligned_cols=31 Identities=23% Similarity=0.241 Sum_probs=26.4
Q ss_pred CCchhhHHHHHHHHHHHHHHHHhCCCeEEEc
Q psy3318 84 CNVPQERSATYDRVEKLINAAGESGVNVLCL 114 (139)
Q Consensus 84 apv~~qk~anl~k~~~lI~~AA~~GanIICL 114 (139)
.|-.+.+++.++.....|+.|+..|+..|++
T Consensus 65 ~~~~~~r~~~~~~~~~~i~~A~~lGa~~v~~ 95 (254)
T 3ayv_A 65 SPDPEVRGLTLRRLLFGLDRAAELGADRAVF 95 (254)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHTTCSEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 3445678888999999999999999999875
No 63
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=37.38 E-value=48 Score=26.31 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHhCCCeEEEcc
Q psy3318 93 TYDRVEKLINAAGESGVNVLCLQ 115 (139)
Q Consensus 93 nl~k~~~lI~~AA~~GanIICLQ 115 (139)
..+.+.++|+.|+++|+++|-+|
T Consensus 35 ~~e~a~~~a~~l~~~Ga~~vk~~ 57 (262)
T 1zco_A 35 SREQIMKVAEFLAEVGIKVLRGG 57 (262)
T ss_dssp CHHHHHHHHHHHHHTTCCEEECB
T ss_pred CHHHHHHHHHHHHHcCCCEEEEE
Confidence 36788889999999999999887
No 64
>1nfp_A LUXF gene product; flavin mononucleotide, myristate, flavoprotein; HET: FMN MYR; 1.60A {Photobacterium leiognathi} SCOP: c.1.16.2
Probab=37.32 E-value=1e+02 Score=22.68 Aligned_cols=50 Identities=18% Similarity=0.098 Sum_probs=36.6
Q ss_pred ceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHh--CCCeEEEccccccCCC
Q psy3318 68 VRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGE--SGVNVLCLQEAWRRPD 122 (139)
Q Consensus 68 VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~--~GanIICLQElf~~Py 122 (139)
+++|+.=.....+ . ...-..-++...++++.|=+ .|-+-+-+.|-|++||
T Consensus 4 m~~gi~~~~~~~~-g----~~~~~~~~~~~~~la~~Ae~~~lGf~~~w~~EHH~~~~ 55 (228)
T 1nfp_A 4 WNYGVFFLNFYHV-G----QQEPSLTMSNALETLRIIDEDTSIYDVVAFSEHHIDKS 55 (228)
T ss_dssp CCEEEEEECCSCS-T----TCCHHHHHHHHHHHHHHHHHTCSCEEEEEEECTTSCCB
T ss_pred eEEEEEecccCCC-C----CCCHHHHHHHHHHHHHHhccccCCCCEEeccccCCCCC
Confidence 6788873322111 1 00234568889999999999 9999999999999998
No 65
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=37.27 E-value=63 Score=23.64 Aligned_cols=28 Identities=7% Similarity=0.184 Sum_probs=22.1
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCeEEEc
Q psy3318 87 PQERSATYDRVEKLINAAGESGVNVLCL 114 (139)
Q Consensus 87 ~~qk~anl~k~~~lI~~AA~~GanIICL 114 (139)
...+++.++.....|+.|+..|+..|++
T Consensus 76 ~~~~~~~~~~~~~~i~~a~~lG~~~v~~ 103 (278)
T 1i60_A 76 EKGHNEIITEFKGMMETCKTLGVKYVVA 103 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 4556777888888888888888888776
No 66
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=36.87 E-value=78 Score=24.50 Aligned_cols=29 Identities=14% Similarity=0.109 Sum_probs=21.2
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCeEEEcc
Q psy3318 87 PQERSATYDRVEKLINAAGESGVNVLCLQ 115 (139)
Q Consensus 87 ~~qk~anl~k~~~lI~~AA~~GanIICLQ 115 (139)
...+++.++...+.|+.|+..|+..|+++
T Consensus 106 ~~~~~~~~~~~~~~i~~A~~lG~~~v~~~ 134 (305)
T 3obe_A 106 KENMPKFDEFWKKATDIHAELGVSCMVQP 134 (305)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHTCSEEEEC
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCEEEeC
Confidence 34566667777788888888888877765
No 67
>1xla_A D-xylose isomerase; isomerase(intramolecular oxidoreductase); 2.30A {Arthrobacter SP} SCOP: c.1.15.3 PDB: 1die_A* 1did_A 1xlb_A 1xlc_A* 1xld_A* 1xle_A 1xlf_A* 1xlg_A* 1xlh_A 1xli_A* 1xlj_A* 1xlk_A 1xll_A 1xlm_A* 4xia_A* 5xia_A*
Probab=35.89 E-value=67 Score=26.06 Aligned_cols=30 Identities=23% Similarity=0.262 Sum_probs=25.9
Q ss_pred CchhhHHHHHHHHHHHHHHHHhCCCeEEEc
Q psy3318 85 NVPQERSATYDRVEKLINAAGESGVNVLCL 114 (139)
Q Consensus 85 pv~~qk~anl~k~~~lI~~AA~~GanIICL 114 (139)
|-.+.++..+++....|+.|+..|+..|++
T Consensus 106 ~d~~~r~~~i~~~~~~i~~A~~LGa~~vvv 135 (394)
T 1xla_A 106 NDRSIRRFALAKVLHNIDLAAEMGAETFVM 135 (394)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTTCSEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 445567888999999999999999999875
No 68
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=35.72 E-value=45 Score=24.90 Aligned_cols=28 Identities=14% Similarity=0.048 Sum_probs=24.2
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCeEEEc
Q psy3318 87 PQERSATYDRVEKLINAAGESGVNVLCL 114 (139)
Q Consensus 87 ~~qk~anl~k~~~lI~~AA~~GanIICL 114 (139)
.+.+++.++...+.|+.|+..|+..|++
T Consensus 85 ~~~r~~~~~~~~~~i~~A~~lGa~~v~~ 112 (269)
T 3ngf_A 85 SGREQEFRDNVDIALHYALALDCRTLHA 112 (269)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCEEEC
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 4457888899999999999999998876
No 69
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=35.03 E-value=21 Score=30.06 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEcc
Q psy3318 92 ATYDRVEKLINAAGESGVNVLCLQ 115 (139)
Q Consensus 92 anl~k~~~lI~~AA~~GanIICLQ 115 (139)
..++.+.++|+.|+++||+.|=||
T Consensus 32 gs~e~a~~li~~ak~aGadavKfq 55 (349)
T 2wqp_A 32 GSLKTAFEMVDAAYNAGAEVVKHQ 55 (349)
T ss_dssp TCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CCHHHHHHHHHHHHHhCCCEEeee
Confidence 468899999999999999999998
No 70
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=34.72 E-value=85 Score=23.89 Aligned_cols=76 Identities=16% Similarity=0.180 Sum_probs=23.4
Q ss_pred HHHHHHhCCCCccccCCccc----cCCeeeeeeeccCCCCCCCCCccceEEEEecc--cCCCCCCCCchhhHHHHHHHHH
Q psy3318 25 LVNAVLYGEPLKKLYLPNSK----SNEFNVVGYKFGAKPESSRPPRLVRVGIIQNH--IGNSTVSCNVPQERSATYDRVE 98 (139)
Q Consensus 25 ev~riLyG~~~~~l~lp~~a----~~~Fel~~y~f~a~~EqlR~pr~VrVGLIQ~s--i~~~t~~apv~~qk~anl~k~~ 98 (139)
=|.|+|-|++ .++++. ..--+=-||.-....-.||..+.-+||+|-.. .. .|+ ...-..
T Consensus 19 TVSrvln~~~----~vs~~tr~rV~~~a~~lgY~pn~~a~~l~~~~~~~Igvi~~~~~~~-----~~~------~~~~~~ 83 (338)
T 3dbi_A 19 TVSRVLSGNG----YVSQETKDRVFQAVEESGYRPNLLARNLSAKSTQTLGLVVTNTLYH-----GIY------FSELLF 83 (338)
T ss_dssp ---------------------------------------------CCSEEEEEECTTTTS-----TTH------HHHHHH
T ss_pred HHHHHHCCCC----CCCHHHHHHHHHHHHHHCCCcCHHHHHhhhCCCCEEEEEecCCccc-----Chh------HHHHHH
Confidence 4777777752 122222 11122347776666667787788899999765 32 222 122233
Q ss_pred HHHHHHHhCCCeEEEcc
Q psy3318 99 KLINAAGESGVNVLCLQ 115 (139)
Q Consensus 99 ~lI~~AA~~GanIICLQ 115 (139)
.+.++|.+.|.+++++.
T Consensus 84 gi~~~a~~~g~~~~~~~ 100 (338)
T 3dbi_A 84 HAARMAEEKGRQLLLAD 100 (338)
T ss_dssp HHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHCCCEEEEEe
Confidence 44556667788887653
No 71
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=34.47 E-value=65 Score=24.55 Aligned_cols=52 Identities=17% Similarity=0.229 Sum_probs=22.2
Q ss_pred eeeeccCCCCCCCCCccceEEEEecccCCCCCCCCchhhHHHHHHHHH-HHHHHHHhCCCeEEEc
Q psy3318 51 VGYKFGAKPESSRPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVE-KLINAAGESGVNVLCL 114 (139)
Q Consensus 51 ~~y~f~a~~EqlR~pr~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~-~lI~~AA~~GanIICL 114 (139)
-||.-....-.||..+..+||+|-..... | -+..+. .+-+.|.+.|.+++++
T Consensus 47 lgY~pn~~ar~l~~~~~~~Ig~i~~~~~~-----~-------~~~~~~~gi~~~~~~~g~~~~~~ 99 (332)
T 2o20_A 47 LDYRPNAVARGLASKRTTTVGVILPTITS-----T-------YFAAITRGVDDIASMYKYNMILA 99 (332)
T ss_dssp ---------------CCCEEEEEESCTTC-----H-------HHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HCCCcCHHHHHHhcCCCCEEEEEeCCCCC-----c-------HHHHHHHHHHHHHHHcCCEEEEE
Confidence 36765555566787778899999764321 2 233333 3444556679988764
No 72
>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A*
Probab=34.25 E-value=42 Score=24.91 Aligned_cols=30 Identities=10% Similarity=0.148 Sum_probs=25.8
Q ss_pred CchhhHHHHHHHHHHHHHHHHhCCCeEEEc
Q psy3318 85 NVPQERSATYDRVEKLINAAGESGVNVLCL 114 (139)
Q Consensus 85 pv~~qk~anl~k~~~lI~~AA~~GanIICL 114 (139)
|-.+.+++.++.....|+.|+..|+..|++
T Consensus 79 ~~~~~r~~~~~~~~~~i~~A~~lG~~~v~~ 108 (287)
T 2x7v_A 79 PKDDIWQKSVELLKKEVEICRKLGIRYLNI 108 (287)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 445678889999999999999999999876
No 73
>2jx3_A Protein DEK; alpha helix, SAF/SAP motif, DNA binding, chromosomal rearrangement, DNA-binding, nucleus, phosphorylation, proto oncogene; NMR {Homo sapiens}
Probab=34.24 E-value=33 Score=25.06 Aligned_cols=53 Identities=25% Similarity=0.309 Sum_probs=35.1
Q ss_pred CCcchHHHHHHcCCChHHHHHHHHHHhCCCCccccCCccccCCeeeeeeeccCCCCC
Q psy3318 5 EPFESVETILQKYIPEDELKLVNAVLYGEPLKKLYLPNSKSNEFNVVGYKFGAKPES 61 (139)
Q Consensus 5 ~~~~sle~~l~~~lp~~~l~ev~riLyG~~~~~l~lp~~a~~~Fel~~y~f~a~~Eq 61 (139)
.++..|..-|.+ ...++|+-+-|||||++-..-.+- .+=-+..||.|..+.||
T Consensus 12 ~dIp~V~~~i~k-~k~d~Lk~LH~ilfgr~Gk~~~~K---knI~~FsGF~~~~~~~~ 64 (131)
T 2jx3_A 12 CEIERIHFFLSK-KKTDELRNLHKLLYNRPGTVSSLK---KNVGQFSGFPFEKGSVQ 64 (131)
T ss_dssp TTCHHHHHHHHT-CCHHHHHHHHHHTSSSCCCSHHHH---HHHHTSSCSSCCCSSHH
T ss_pred cccHHHHHHHcc-cCHHHHHHHHHHHcCCCChHhHHH---HHHHhcCCCCCCccHHH
Confidence 467788888877 577889999999999853311100 22234568888766553
No 74
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=34.18 E-value=36 Score=25.45 Aligned_cols=27 Identities=19% Similarity=0.084 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCeEEEc
Q psy3318 88 QERSATYDRVEKLINAAGESGVNVLCL 114 (139)
Q Consensus 88 ~qk~anl~k~~~lI~~AA~~GanIICL 114 (139)
..+++.++.....|+.|+..|+..|++
T Consensus 77 ~~~~~~~~~~~~~i~~A~~lG~~~v~~ 103 (286)
T 3dx5_A 77 ADFEKTIEKCEQLAILANWFKTNKIRT 103 (286)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred hhHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 457788999999999999999999865
No 75
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=33.96 E-value=1.4e+02 Score=25.24 Aligned_cols=33 Identities=12% Similarity=0.267 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhCCCeEEEccccc--cCCCCCC
Q psy3318 93 TYDRVEKLINAAGESGVNVLCLQEAW--RRPDRYG 125 (139)
Q Consensus 93 nl~k~~~lI~~AA~~GanIICLQElf--~~PyaFC 125 (139)
..+.+.++++.|+++||++|-+|=-- ++||.|.
T Consensus 154 s~e~a~~~a~~~k~aGa~~vk~q~fkprts~~~f~ 188 (385)
T 3nvt_A 154 SYEQVAAVAESIKAKGLKLIRGGAFKPRTSPYDFQ 188 (385)
T ss_dssp CHHHHHHHHHHHHHTTCCEEECBSSCCCSSTTSCC
T ss_pred CHHHHHHHHHHHHHcCCCeEEcccccCCCChHhhc
Confidence 46778889999999999999988421 4577663
No 76
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=33.60 E-value=23 Score=26.07 Aligned_cols=13 Identities=23% Similarity=0.169 Sum_probs=11.4
Q ss_pred HHHHHHHHHhCCC
Q psy3318 22 ELKLVNAVLYGEP 34 (139)
Q Consensus 22 ~l~ev~riLyG~~ 34 (139)
|.+||||||+.+.
T Consensus 4 ERqeVk~il~s~~ 16 (117)
T 2l9w_A 4 ERNEVKRLLASRN 16 (117)
T ss_dssp HHHHHHHHHHCCC
T ss_pred hHHHHHHHHhccC
Confidence 6799999999973
No 77
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=33.02 E-value=90 Score=23.87 Aligned_cols=53 Identities=13% Similarity=0.122 Sum_probs=32.4
Q ss_pred eeeeccCCCCCCCCCccceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEc
Q psy3318 51 VGYKFGAKPESSRPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCL 114 (139)
Q Consensus 51 ~~y~f~a~~EqlR~pr~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICL 114 (139)
-||.-....-.||..+.-+||+|-..... |+- ..-...+-++|.+.|.++++.
T Consensus 52 lgY~pn~~a~~l~~~~~~~Ig~i~~~~~~-----~~~------~~~~~gi~~~a~~~g~~~~~~ 104 (344)
T 3kjx_A 52 LGYVPNKIAGALASNRVNLVAVIIPSLSN-----MVF------PEVLTGINQVLEDTELQPVVG 104 (344)
T ss_dssp HTCCCCCCCSCSTTSCCSEEEEEESCSSS-----SSH------HHHHHHHHHHHTSSSSEEEEE
T ss_pred hCCCCCHHHHHhhcCCCCEEEEEeCCCCc-----HHH------HHHHHHHHHHHHHCCCEEEEE
Confidence 36666666667777777899999765432 221 122233445556669988754
No 78
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=32.66 E-value=47 Score=24.90 Aligned_cols=28 Identities=14% Similarity=0.216 Sum_probs=24.6
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCeEEEc
Q psy3318 87 PQERSATYDRVEKLINAAGESGVNVLCL 114 (139)
Q Consensus 87 ~~qk~anl~k~~~lI~~AA~~GanIICL 114 (139)
.+.+++.++...+.|+.|+..|+..|++
T Consensus 94 ~~~r~~~~~~~~~~i~~a~~lG~~~v~~ 121 (290)
T 3tva_A 94 LETRASRVAEMKEISDFASWVGCPAIGL 121 (290)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 3467888999999999999999999876
No 79
>3n1e_A Vacuolar protein sorting-associated protein 54; spinal muscular atrophy, vesicle trafficking, golgi apparatu tethering complex, GARP.; 1.70A {Mus musculus} PDB: 3n1b_A
Probab=31.85 E-value=23 Score=26.43 Aligned_cols=27 Identities=7% Similarity=0.273 Sum_probs=22.3
Q ss_pred CcchHHHHHHcCCChHHHHHHHHHHhC
Q psy3318 6 PFESVETILQKYIPEDELKLVNAVLYG 32 (139)
Q Consensus 6 ~~~sle~~l~~~lp~~~l~ev~riLyG 32 (139)
++..|++.|.++||++.++-+-+-.+.
T Consensus 60 e~~kLH~~Ls~~LP~~~v~~Im~~Vf~ 86 (141)
T 3n1e_A 60 QMTKMHEAIFDLLPEEQTQMLFLRINA 86 (141)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 456899999999999999888765544
No 80
>2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3-epimeras tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima}
Probab=31.63 E-value=99 Score=23.19 Aligned_cols=29 Identities=28% Similarity=0.267 Sum_probs=25.2
Q ss_pred CchhhHHHHHHHHHHHHHHHHhCCCeEEE
Q psy3318 85 NVPQERSATYDRVEKLINAAGESGVNVLC 113 (139)
Q Consensus 85 pv~~qk~anl~k~~~lI~~AA~~GanIIC 113 (139)
|-...+++.++...+.|+.|+..|+..|+
T Consensus 103 ~d~~~r~~~~~~~~~~i~~A~~lG~~~v~ 131 (290)
T 2zvr_A 103 PNDEIRKKAIERVVKHTEVAGMFGALVII 131 (290)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 34456888899999999999999999998
No 81
>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*
Probab=31.56 E-value=47 Score=24.67 Aligned_cols=30 Identities=20% Similarity=0.190 Sum_probs=25.8
Q ss_pred CchhhHHHHHHHHHHHHHHHHhCCCeEEEc
Q psy3318 85 NVPQERSATYDRVEKLINAAGESGVNVLCL 114 (139)
Q Consensus 85 pv~~qk~anl~k~~~lI~~AA~~GanIICL 114 (139)
|-.+.+++.++.....|+.|+..|+..|+.
T Consensus 78 ~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~ 107 (290)
T 2qul_A 78 PDKSVRDAGTEYVKRLLDDCHLLGAPVFAG 107 (290)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEe
Confidence 445668888999999999999999999874
No 82
>1fvp_A Flavoprotein 390, FP390; flavin-binding protein; HET: FMA; 2.70A {Photobacterium phosphoreum} SCOP: c.1.16.2
Probab=31.21 E-value=95 Score=22.69 Aligned_cols=31 Identities=13% Similarity=0.168 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHh--CCCeEEEccccccCCC
Q psy3318 92 ATYDRVEKLINAAGE--SGVNVLCLQEAWRRPD 122 (139)
Q Consensus 92 anl~k~~~lI~~AA~--~GanIICLQElf~~Py 122 (139)
.-++...++++.|=+ .|-+-+-+.|-|++||
T Consensus 23 ~~~~~~~~la~~Ae~~~lGf~~~w~~EHH~~~~ 55 (231)
T 1fvp_A 23 KTMNNALETLRIIDEDTSIYDVINIDDHYLVKK 55 (231)
T ss_dssp HHHHHHHHHHHHHHHHCSSEEEEEEECTTSCCB
T ss_pred HHHHHHHHHHHHHhhhcCCCCeEeecccCCCCC
Confidence 467888999999999 9999999999999998
No 83
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=31.19 E-value=71 Score=24.65 Aligned_cols=53 Identities=11% Similarity=0.198 Sum_probs=20.7
Q ss_pred eeeeccCCCCCCCCCccceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEc
Q psy3318 51 VGYKFGAKPESSRPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCL 114 (139)
Q Consensus 51 ~~y~f~a~~EqlR~pr~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICL 114 (139)
-||.-....-.||..+..+||+|-..+.. |+ ...-+..+-+.|.+.|.++++.
T Consensus 45 lgY~pn~~ar~l~~~~~~~Igvi~~~~~~-----~~------~~~~~~gi~~~a~~~g~~~~~~ 97 (349)
T 1jye_A 45 LNYIPNRVAQQLAGKQSLLIGVATSSLAL-----HA------PSQIVAAILSRADQLGASVVVS 97 (349)
T ss_dssp -----------------CEEEEEESCTTS-----HH------HHHHHHHHHHHHHHTTCEEEEE
T ss_pred HCCCcCHHHHHhhcCCCCEEEEEeCCCCc-----cc------HHHHHHHHHHHHHHcCCEEEEE
Confidence 46665554556777777899999764322 11 1122234455566779988753
No 84
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=30.42 E-value=1.2e+02 Score=26.34 Aligned_cols=71 Identities=11% Similarity=0.168 Sum_probs=42.8
Q ss_pred eeeeeeeccCC--CCCCC-CCccceEEEEecccCCCCCCC--C----chhhHHHHH----HHHHHHHHHHHhCCCeEEEc
Q psy3318 48 FNVVGYKFGAK--PESSR-PPRLVRVGIIQNHIGNSTVSC--N----VPQERSATY----DRVEKLINAAGESGVNVLCL 114 (139)
Q Consensus 48 Fel~~y~f~a~--~EqlR-~pr~VrVGLIQ~si~~~t~~a--p----v~~qk~anl----~k~~~lI~~AA~~GanIICL 114 (139)
.=+.|+.|+-. ..++. .-...||.+++.....+.... . -.++.+... +.+..+++.-++.|+|||+.
T Consensus 203 ~lv~G~v~dk~~~~~~m~~~ien~kIlll~~~le~~k~e~~~~v~i~~~~~~~~i~~~E~~~l~~~v~kI~~~g~nvvi~ 282 (529)
T 3iyg_A 203 MLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILT 282 (529)
T ss_pred EEEeeeEEecCcccccCCcccCCceEEEecCCcccccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 44688888643 22322 223468999998764332100 0 012333333 36888899999999999998
Q ss_pred cccc
Q psy3318 115 QEAW 118 (139)
Q Consensus 115 QElf 118 (139)
++-.
T Consensus 283 ~~~I 286 (529)
T 3iyg_A 283 TGGI 286 (529)
T ss_pred CCCC
Confidence 8755
No 85
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=30.19 E-value=57 Score=24.42 Aligned_cols=51 Identities=18% Similarity=0.189 Sum_probs=22.2
Q ss_pred eeeccCCCCCCCCCccceEEEEecc-----cCCCCCCCCchhhHHHHHHHHH-HHHHHHHhCCCeEEEc
Q psy3318 52 GYKFGAKPESSRPPRLVRVGIIQNH-----IGNSTVSCNVPQERSATYDRVE-KLINAAGESGVNVLCL 114 (139)
Q Consensus 52 ~y~f~a~~EqlR~pr~VrVGLIQ~s-----i~~~t~~apv~~qk~anl~k~~-~lI~~AA~~GanIICL 114 (139)
||.-....-.||..+.-+||+|-.. ... .-+..+. .+-++|.+.|.+++++
T Consensus 7 gY~pn~~Ar~L~~~~~~~Igvi~~~~~~~~~~~------------~~~~~~~~gi~~~a~~~g~~~~~~ 63 (305)
T 3huu_A 7 GYIPNQAARTLITNKTLTIGLIQKSSAPEIRQN------------PFNSDVLNGINQACNVRGYSTRMT 63 (305)
T ss_dssp --------------CCCEEEEECSCCSHHHHTS------------HHHHHHHHHHHHHHHHHTCEEEEC
T ss_pred CCCcCHHHHHhhhCCCCEEEEEeCCCccccccC------------cHHHHHHHHHHHHHHHCCCEEEEE
Confidence 6766665567777778899999664 211 1233333 3445555679999864
No 86
>2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium tumefaciens} PDB: 2hk1_A*
Probab=30.07 E-value=69 Score=24.41 Aligned_cols=30 Identities=10% Similarity=0.077 Sum_probs=25.6
Q ss_pred CchhhHHHHHHHHHHHHHHHHhCCCeEEEc
Q psy3318 85 NVPQERSATYDRVEKLINAAGESGVNVLCL 114 (139)
Q Consensus 85 pv~~qk~anl~k~~~lI~~AA~~GanIICL 114 (139)
|-.+.+++.++.....|+.|+..|+..|+.
T Consensus 97 ~d~~~r~~~~~~~~~~i~~A~~lG~~~v~~ 126 (309)
T 2hk0_A 97 EDAAVRAAGKAFFERTLSNVAKLDIHTIGG 126 (309)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEe
Confidence 334668888999999999999999999873
No 87
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=29.95 E-value=64 Score=24.81 Aligned_cols=74 Identities=18% Similarity=0.260 Sum_probs=21.9
Q ss_pred HHHHHHhCCCCccccCCccc-cC---CeeeeeeeccCCCCCCCCCccceEEEEecccCCCCCCCCchhhHHHHHHHHH-H
Q psy3318 25 LVNAVLYGEPLKKLYLPNSK-SN---EFNVVGYKFGAKPESSRPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVE-K 99 (139)
Q Consensus 25 ev~riLyG~~~~~l~lp~~a-~~---~Fel~~y~f~a~~EqlR~pr~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~-~ 99 (139)
-|.|+|-|++ .+.+.. ++ --+=-||.-....-.||..+.-+||+|-.....+ -+..+. .
T Consensus 22 TVSr~Ln~~~----~vs~~tr~rV~~~a~~lgY~pn~~a~~l~~~~~~~Igvi~~~~~~~------------~~~~~~~g 85 (333)
T 3jvd_A 22 TASRALSGKG----YVSPQTREKVQAAAKELNYVPNQLAKALREHRSALVGVIVPDLSNE------------YYSESLQT 85 (333)
T ss_dssp ----------------------------------------------CCEEEEEESCSSSH------------HHHHHHHH
T ss_pred HHHHHHcCCC----CCCHHHHHHHHHHHHHHCCCcCHHHHHhhcCCCCEEEEEeCCCcCh------------HHHHHHHH
Confidence 4777887742 122222 11 1223477766666677877888999998754221 233333 3
Q ss_pred HHHHHHhCCCeEEEc
Q psy3318 100 LINAAGESGVNVLCL 114 (139)
Q Consensus 100 lI~~AA~~GanIICL 114 (139)
+-++|.+.|.+++++
T Consensus 86 i~~~a~~~g~~~~~~ 100 (333)
T 3jvd_A 86 IQQDLKAAGYQMLVA 100 (333)
T ss_dssp HHHHHHHHTCEEEEE
T ss_pred HHHHHHHCCCEEEEE
Confidence 445555669998764
No 88
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=29.64 E-value=82 Score=23.94 Aligned_cols=52 Identities=12% Similarity=0.194 Sum_probs=21.2
Q ss_pred eeeeccCCCCCCCCCccceEEEEecccCCCCCCCCchhhHHHHHHHHH-HHHHHHHhCCCeEEEc
Q psy3318 51 VGYKFGAKPESSRPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVE-KLINAAGESGVNVLCL 114 (139)
Q Consensus 51 ~~y~f~a~~EqlR~pr~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~-~lI~~AA~~GanIICL 114 (139)
-||.-....-.||..+..+||+|-.... .| -+..+. .+-+.|.+.|.+++++
T Consensus 44 lgY~pn~~a~~l~~~~~~~Igvi~~~~~-----~~-------~~~~~~~gi~~~~~~~g~~~~~~ 96 (330)
T 3ctp_A 44 LNYTPNALARAMFTKNSKTIGLMVPNIS-----NP-------FFNQMASVIEEYAKNKGYTLFLC 96 (330)
T ss_dssp ----------------CCEEEEEESCTT-----SH-------HHHHHHHHHHHHHHHTTCEEEEE
T ss_pred hCCCcCHHHHHhhcCCCCEEEEEeCCCC-----Cc-------HHHHHHHHHHHHHHHCCCEEEEE
Confidence 3666555555677777789999976431 12 223333 3344555679988764
No 89
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=29.58 E-value=1.2e+02 Score=22.22 Aligned_cols=41 Identities=10% Similarity=0.192 Sum_probs=25.1
Q ss_pred CCCCccceEEEEecccCCCCCCCCchhhHHHHHHHH-HHHHHHHHhCCCeEEEc
Q psy3318 62 SRPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRV-EKLINAAGESGVNVLCL 114 (139)
Q Consensus 62 lR~pr~VrVGLIQ~si~~~t~~apv~~qk~anl~k~-~~lI~~AA~~GanIICL 114 (139)
||..+..+||+|-..... |+ +..+ ..+-++|.+.|.+++++
T Consensus 3 L~~~~~~~Igvi~~~~~~-----~~-------~~~~~~gi~~~a~~~g~~~~~~ 44 (277)
T 3cs3_A 3 LKRRQTNIIGVYLADYGG-----SF-------YGELLEGIKKGLALFDYEMIVC 44 (277)
T ss_dssp -CCCCCCEEEEEECSSCT-----TT-------HHHHHHHHHHHHHTTTCEEEEE
T ss_pred ccccCCcEEEEEecCCCC-----hh-------HHHHHHHHHHHHHHCCCeEEEE
Confidence 677777899999865422 22 2223 33445566779998764
No 90
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii}
Probab=29.52 E-value=82 Score=27.12 Aligned_cols=72 Identities=8% Similarity=0.029 Sum_probs=38.4
Q ss_pred CeeeeeeeccCCC--CCC-CCCccceEEEEecccCCCCCC----------CCchhhHHHHHHHHHHHHHHHHhCCCeEEE
Q psy3318 47 EFNVVGYKFGAKP--ESS-RPPRLVRVGIIQNHIGNSTVS----------CNVPQERSATYDRVEKLINAAGESGVNVLC 113 (139)
Q Consensus 47 ~Fel~~y~f~a~~--Eql-R~pr~VrVGLIQ~si~~~t~~----------apv~~qk~anl~k~~~lI~~AA~~GanIIC 113 (139)
-+=+.|+.|+-.. ..+ +.-...||.++..+...+.+. ..+..-.++-.+.+..+++..++.|++||+
T Consensus 164 s~lv~G~v~dk~~~~~~m~~~i~n~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi 243 (500)
T 3aq1_B 164 SELIDGLVIDKERSHPNMPEKVENAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLDQEEKMMREMAEKVIASGANVVF 243 (500)
T ss_dssp CEEESEEEESCCCSSTTSCSEEEEEEEEEESSCBCC-------------------------CHHHHHHHHHHTTCCSEEE
T ss_pred eEEEeeeEEeecCCCCCCcccccCCEEEEEeCCccccccccceeEeeCCHHHHHHHHHHHHHHHHHHHHHHHHhCcCEEE
Confidence 3446788886553 222 111236899998874322110 111111122233457888888999999999
Q ss_pred ccccc
Q psy3318 114 LQEAW 118 (139)
Q Consensus 114 LQElf 118 (139)
.++-.
T Consensus 244 ~~~~I 248 (500)
T 3aq1_B 244 CQKGI 248 (500)
T ss_dssp ESSCB
T ss_pred ECCCc
Confidence 88754
No 91
>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A*
Probab=29.45 E-value=12 Score=30.48 Aligned_cols=23 Identities=26% Similarity=0.173 Sum_probs=19.7
Q ss_pred HHHHHHhCCCeEEEccccccCCCCCC
Q psy3318 100 LINAAGESGVNVLCLQEAWRRPDRYG 125 (139)
Q Consensus 100 lI~~AA~~GanIICLQElf~~PyaFC 125 (139)
.|+.|++.||..| |+++.+|+=+
T Consensus 140 qi~aA~~~GA~~I---ELhTG~Ya~a 162 (243)
T 1m5w_A 140 QIKAAAEVGAPFI---EIHTGCYADA 162 (243)
T ss_dssp HHHHHHHTTCSEE---EEECHHHHHC
T ss_pred HHHHHHHhCcCEE---EEechhhhcC
Confidence 6788999999998 9999999644
No 92
>3cny_A Inositol catabolism protein IOLE; xylose isomerase-like TIM barrel, structural genomics, joint for structural genomics, JCSG; 1.85A {Lactobacillus plantarum WCFS1}
Probab=29.33 E-value=58 Score=24.29 Aligned_cols=29 Identities=14% Similarity=0.048 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCeEEEccc
Q psy3318 88 QERSATYDRVEKLINAAGESGVNVLCLQE 116 (139)
Q Consensus 88 ~qk~anl~k~~~lI~~AA~~GanIICLQE 116 (139)
+.+++.++.....|+.|+..|+..|++.-
T Consensus 83 ~~~~~~~~~~~~~i~~a~~lG~~~v~~~~ 111 (301)
T 3cny_A 83 DGIEKASEAFEKHCQYLKAINAPVAVVSE 111 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCEEEecC
Confidence 45777889999999999999999988754
No 93
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A
Probab=29.19 E-value=70 Score=27.94 Aligned_cols=73 Identities=14% Similarity=0.291 Sum_probs=43.2
Q ss_pred CCeeeeeeeccCCCCCCCCCc---cceEEEEecccCCCCCCCC----c--hhhH----HHHHHHHHHHHHHHHhCCCeEE
Q psy3318 46 NEFNVVGYKFGAKPESSRPPR---LVRVGIIQNHIGNSTVSCN----V--PQER----SATYDRVEKLINAAGESGVNVL 112 (139)
Q Consensus 46 ~~Fel~~y~f~a~~EqlR~pr---~VrVGLIQ~si~~~t~~ap----v--~~qk----~anl~k~~~lI~~AA~~GanII 112 (139)
..+=+.|+.|+-....-..|+ ..||.++..+...+..... + ..+. ++-.+.+..+++..++.|++||
T Consensus 212 ds~lv~G~v~dk~~~~~~m~~~ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lv 291 (548)
T 1q3q_A 212 ESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVV 291 (548)
T ss_dssp GCEEESSEEESCCCSSTTSCSEESSEEEEEECSCBSCCCCSSCCCEEECSHHHHHHHHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred ceEEEeeEEEeccCCCCCCcceecCCEEEEEecCcCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCcCEE
Confidence 345567888875533212233 3689999987543321000 1 1232 2233446788888899999999
Q ss_pred Eccccc
Q psy3318 113 CLQEAW 118 (139)
Q Consensus 113 CLQElf 118 (139)
+.++-.
T Consensus 292 i~~~~I 297 (548)
T 1q3q_A 292 FVQKGI 297 (548)
T ss_dssp EESSCB
T ss_pred EEcCCc
Confidence 988754
No 94
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=28.54 E-value=92 Score=22.77 Aligned_cols=41 Identities=15% Similarity=0.104 Sum_probs=21.6
Q ss_pred CCCCccceEEEEecccCCCCCCCCchhhHHHHHHHH-HHHHHHHHhCCCeEEEc
Q psy3318 62 SRPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRV-EKLINAAGESGVNVLCL 114 (139)
Q Consensus 62 lR~pr~VrVGLIQ~si~~~t~~apv~~qk~anl~k~-~~lI~~AA~~GanIICL 114 (139)
||..+.-+||+|-.....+ -+..+ ..+-++|.+.|.+++++
T Consensus 3 L~~~~~~~Ig~i~~~~~~~------------~~~~~~~gi~~~a~~~g~~~~~~ 44 (293)
T 3l6u_A 3 LTSPKRNIVGFTIVNDKHE------------FAQRLINAFKAEAKANKYEALVA 44 (293)
T ss_dssp ------CEEEEEESCSCSH------------HHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCCcEEEEEEecCCcH------------HHHHHHHHHHHHHHHcCCEEEEE
Confidence 5667778999998754221 23333 33445566679998865
No 95
>3aal_A Probable endonuclease 4; endoiv, DNA repair, base excision repair, TIM barrel, DNA DA endonuclease, hydrolase, metal-binding; 1.60A {Geobacillus kaustophilus} PDB: 1xp3_A
Probab=28.24 E-value=57 Score=24.85 Aligned_cols=28 Identities=21% Similarity=0.132 Sum_probs=25.1
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCeEEEc
Q psy3318 87 PQERSATYDRVEKLINAAGESGVNVLCL 114 (139)
Q Consensus 87 ~~qk~anl~k~~~lI~~AA~~GanIICL 114 (139)
.+.+++.++.....|+.|+..|+..|++
T Consensus 86 ~~~r~~~~~~~~~~i~~A~~lGa~~vv~ 113 (303)
T 3aal_A 86 LDTFSLGVDFLRAEIERTEAIGAKQLVL 113 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 5678889999999999999999998875
No 96
>3o6c_A PNP synthase, pyridoxine 5'-phosphate synthase; structural genomics, IDP90671, center for structural genomic infectious diseases; HET: MSE; 1.87A {Campylobacter jejuni subsp} SCOP: c.1.24.0 PDB: 3o6d_A*
Probab=28.20 E-value=14 Score=30.52 Aligned_cols=21 Identities=10% Similarity=-0.089 Sum_probs=18.9
Q ss_pred HHHHHHhCCCeEEEccccccCCCC
Q psy3318 100 LINAAGESGVNVLCLQEAWRRPDR 123 (139)
Q Consensus 100 lI~~AA~~GanIICLQElf~~Pya 123 (139)
.|+.|++.||+.| |+++.+||
T Consensus 137 qi~aA~~~GAd~I---ELhTG~YA 157 (260)
T 3o6c_A 137 DIEKSKILKAQFI---ELHTGHYA 157 (260)
T ss_dssp HHHHHHHTTCSEE---EECCHHHH
T ss_pred HHHHHHHhCCCEE---EEechHhh
Confidence 6889999999999 99999984
No 97
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h*
Probab=27.93 E-value=73 Score=28.01 Aligned_cols=72 Identities=13% Similarity=0.218 Sum_probs=44.2
Q ss_pred CeeeeeeeccCCCCCCC-CCc---cceEEEEecccCCCCCC--CC--c--hhhHHH----HHHHHHHHHHHHHhCCCeEE
Q psy3318 47 EFNVVGYKFGAKPESSR-PPR---LVRVGIIQNHIGNSTVS--CN--V--PQERSA----TYDRVEKLINAAGESGVNVL 112 (139)
Q Consensus 47 ~Fel~~y~f~a~~EqlR-~pr---~VrVGLIQ~si~~~t~~--ap--v--~~qk~a----nl~k~~~lI~~AA~~GanII 112 (139)
..=+.|+.|+-..+.+. .-. ..||.+++.+...+.+. .. + .++... -.+.+..+++.-.+.|++||
T Consensus 220 S~lv~G~v~dk~~~~m~~~i~~~~n~kIlll~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~~vv 299 (568)
T 3p9d_H 220 STVIKGMVFNREPEGHVKSLSEDKKHKVAVFTCPLDIANTETKGTVLLHNAQEMLDFSKGEEKQIDAMMKEIADMGVECI 299 (568)
T ss_dssp CEEESSCCBSSCBSSGGGSCCCCSSCEEEEECSCSSSCCCSSSCEEECCSHHHHHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred heeeccEEEeecccCCcEEEecCCcceEEEEccCccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEE
Confidence 45578988876665432 222 57899999875433210 00 1 123332 23456678888899999999
Q ss_pred Eccccc
Q psy3318 113 CLQEAW 118 (139)
Q Consensus 113 CLQElf 118 (139)
+.++-.
T Consensus 300 i~~~~I 305 (568)
T 3p9d_H 300 VAGAGV 305 (568)
T ss_dssp EECSCC
T ss_pred EECCCc
Confidence 887643
No 98
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=27.86 E-value=31 Score=23.31 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=16.2
Q ss_pred hHHHHHHcCCChHH--------------HHHHHHHHhC
Q psy3318 9 SVETILQKYIPEDE--------------LKLVNAVLYG 32 (139)
Q Consensus 9 sle~~l~~~lp~~~--------------l~ev~riLyG 32 (139)
-+.+.+. |||+.+ -++|+|+||.
T Consensus 16 ~v~~~i~-~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~ 52 (75)
T 1sfu_A 16 LVKKEVL-SLNTNDYTTAISLSNRLKINKKKINQQLYK 52 (75)
T ss_dssp HHHHHHH-TSCTTCEECHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHH-hCCCCcchHHHHHHHHHCCCHHHHHHHHHH
Confidence 3444453 788877 4789999997
No 99
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=27.34 E-value=81 Score=24.40 Aligned_cols=52 Identities=19% Similarity=0.405 Sum_probs=19.9
Q ss_pred eeeeccCCCCCCCCCccceEEEEecccCCCCCCCCchhhHHHHHHHHH-HHHHHHHhCCCeEEEc
Q psy3318 51 VGYKFGAKPESSRPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVE-KLINAAGESGVNVLCL 114 (139)
Q Consensus 51 ~~y~f~a~~EqlR~pr~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~-~lI~~AA~~GanIICL 114 (139)
-||.-....-.||..+.-+||+|-..+.. | -+..+. .+-+.|.+.|.+++++
T Consensus 50 lgY~pn~~ar~l~~~~s~~Igvi~~~~~~-----~-------~~~~~~~gi~~~a~~~g~~~~~~ 102 (348)
T 3bil_A 50 LGYRANAQARALRSSRSNTIGVIVPSLIN-----H-------YFAAMVTEIQSTASKAGLATIIT 102 (348)
T ss_dssp ------------------CEEEEESCSSS-----H-------HHHHHHHHHHHHHHHTTCCEEEE
T ss_pred hCCCcCHHHHhhhcCCCCEEEEEeCCCCC-----c-------HHHHHHHHHHHHHHHcCCEEEEE
Confidence 36765555556777777889999764321 2 223333 3444556779988764
No 100
>2knj_A Microplusin preprotein; antimicrobial peptide, rhipicephalus (boophilus) microplus, antimicrobial protein; NMR {Rhipicephalus microplus}
Probab=26.77 E-value=18 Score=25.43 Aligned_cols=28 Identities=11% Similarity=0.260 Sum_probs=23.7
Q ss_pred CcchHHHHHHcCCChHHHHHHHHHHhCC
Q psy3318 6 PFESVETILQKYIPEDELKLVNAVLYGE 33 (139)
Q Consensus 6 ~~~sle~~l~~~lp~~~l~ev~riLyG~ 33 (139)
+.+.+++.|.+|++++|++|+.+..-+.
T Consensus 53 ~~~dl~~~L~~~Ft~~e~~e~h~la~~C 80 (90)
T 2knj_A 53 ATNNLEQAMSVYFTNEQIKEIHDAATAC 80 (90)
T ss_dssp HHCSTHHHHHHHSCHHHHHHHHHHHHHS
T ss_pred cCCCHhHHHHHHCCHHHHHHHHHHHHhc
Confidence 3467899999999999999999986554
No 101
>2zds_A Putative DNA-binding protein; TIM-barrel fold, structural genomics, NPPSFA; 2.30A {Streptomyces coelicolor}
Probab=26.77 E-value=53 Score=25.08 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCeEEEc
Q psy3318 88 QERSATYDRVEKLINAAGESGVNVLCL 114 (139)
Q Consensus 88 ~qk~anl~k~~~lI~~AA~~GanIICL 114 (139)
+.+++.++.....|+.|+..|+..|++
T Consensus 104 ~~r~~~~~~~~~~i~~A~~lGa~~v~~ 130 (340)
T 2zds_A 104 GVRQRAAAEIKDTARAAARLGVDTVIG 130 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 457788999999999999999999876
No 102
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d*
Probab=26.67 E-value=1.7e+02 Score=25.39 Aligned_cols=70 Identities=13% Similarity=0.105 Sum_probs=43.3
Q ss_pred eeeeeeeccCCCCC----CCCCccceEEEEecccCCCCCCCC-------chhhHHH----HHHHHHHHHHHHHhCCCeEE
Q psy3318 48 FNVVGYKFGAKPES----SRPPRLVRVGIIQNHIGNSTVSCN-------VPQERSA----TYDRVEKLINAAGESGVNVL 112 (139)
Q Consensus 48 Fel~~y~f~a~~Eq----lR~pr~VrVGLIQ~si~~~t~~ap-------v~~qk~a----nl~k~~~lI~~AA~~GanII 112 (139)
.=+.|+.|+-.... -+.-...||.+++.++..+.+ .- -..+.+. -.+.+..+++..++.|++||
T Consensus 208 ~lv~G~v~dk~~~~~~~m~~~ien~kIll~~~~le~~k~-~~~~~i~i~~~~~~~~~~~~E~~~l~~~le~I~~~g~~vv 286 (528)
T 3p9d_D 208 EMIDGVVLTQTAIKSAGGPTRKEKAKIGLIQFQISPPKP-DTENNIIVNDYRQMDKILKEERAYLLNICKKIKKAKCNVL 286 (528)
T ss_dssp EEESSCBCCCCCCCSSSCCSEESSEEEEEECCCSSCCCC-SSEEEEEESSSSHHHHHTHHHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEeeeEEeecccCcccCcccccCceEEEEecccccccc-ccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 44678888654321 112234689999998754321 00 1123322 23467788888899999999
Q ss_pred Eccccc
Q psy3318 113 CLQEAW 118 (139)
Q Consensus 113 CLQElf 118 (139)
+.++-.
T Consensus 287 i~~~~I 292 (528)
T 3p9d_D 287 LIQKSI 292 (528)
T ss_dssp EESSCS
T ss_pred EEeCCc
Confidence 998866
No 103
>2qkl_B SPAC19A8.12 protein, SPBC3B9.21 protein; protein-protein complex, hydrolase; 2.33A {Schizosaccharomyces pombe} SCOP: a.242.1.1
Probab=26.64 E-value=33 Score=23.98 Aligned_cols=25 Identities=16% Similarity=0.403 Sum_probs=20.1
Q ss_pred chHHHHHHc-------CCChHHHHHHHHHHhC
Q psy3318 8 ESVETILQK-------YIPEDELKLVNAVLYG 32 (139)
Q Consensus 8 ~sle~~l~~-------~lp~~~l~ev~riLyG 32 (139)
.+++++|+. |+|++||+.+-||++-
T Consensus 6 ~~~~~iLdDL~~RFIiN~P~eel~s~eRl~Fq 37 (95)
T 2qkl_B 6 ATFSQVLDDLSARFILNLPAEEQSSVERLCFQ 37 (95)
T ss_dssp CCHHHHHHHHHHHHTTTCCGGGSSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHhhhHHHHHHH
Confidence 466777664 8899999999999875
No 104
>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=26.54 E-value=69 Score=24.71 Aligned_cols=27 Identities=7% Similarity=-0.001 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHHhCCCeEEEcc
Q psy3318 89 ERSATYDRVEKLINAAGESGVNVLCLQ 115 (139)
Q Consensus 89 qk~anl~k~~~lI~~AA~~GanIICLQ 115 (139)
.+++.++...+.|+.|+..|+..|+.+
T Consensus 102 ~~~~~~~~~~~~i~~A~~lG~~~v~~~ 128 (303)
T 3l23_A 102 VTPKIMEYWKATAADHAKLGCKYLIQP 128 (303)
T ss_dssp THHHHHHHHHHHHHHHHHTTCSEEEEC
T ss_pred hHHHHHHHHHHHHHHHHHcCCCEEEEC
Confidence 467788999999999999999999885
No 105
>4g9p_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; oxidoreductase, isoprenoid biosynthesis, non mevalonate PATH iron-sulphur-cluster; HET: CDI MES; 1.55A {Thermus thermophilus} PDB: 2y0f_A*
Probab=26.41 E-value=64 Score=28.06 Aligned_cols=41 Identities=27% Similarity=0.386 Sum_probs=25.0
Q ss_pred CCCccceEEEE----------ecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEE
Q psy3318 63 RPPRLVRVGII----------QNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLC 113 (139)
Q Consensus 63 R~pr~VrVGLI----------Q~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIIC 113 (139)
|+.|.|+||=| |.=...+ +.|.++..+.+.++ ++.|++||=
T Consensus 6 r~Tr~V~VG~v~IGG~~PI~VQSMtnT~------T~Dv~aTv~QI~~L----~~aG~eiVR 56 (406)
T 4g9p_A 6 RPTPTVYVGRVPIGGAHPIAVQSMTNTP------TRDVEATTAQVLEL----HRAGSEIVR 56 (406)
T ss_dssp CCCCCEEETTEEESTTSCCEEEEECCSC------TTCHHHHHHHHHHH----HHHTCSEEE
T ss_pred ccCeeEEEcCEeeCCCCceeeeecCCCC------cccHHHHHHHHHHH----HHcCCCEEE
Confidence 35577888744 4333222 34677777766555 477899873
No 106
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=26.34 E-value=25 Score=23.93 Aligned_cols=14 Identities=29% Similarity=0.399 Sum_probs=11.9
Q ss_pred cccccCCCCCCchhh
Q psy3318 115 QEAWRRPDRYGSQVY 129 (139)
Q Consensus 115 QElf~~PyaFCt~Ed 129 (139)
||+|..+. ||..+.
T Consensus 68 ~eawk~~~-fC~~~~ 81 (82)
T 3nis_A 68 EEAWNSPL-HCKAEE 81 (82)
T ss_dssp GGGBSSCC-CCGGGC
T ss_pred HHHhCCCC-CCCCCc
Confidence 69999999 998764
No 107
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=26.19 E-value=98 Score=23.83 Aligned_cols=53 Identities=17% Similarity=0.167 Sum_probs=21.3
Q ss_pred eeeeccCCCCCCCCCccceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEc
Q psy3318 51 VGYKFGAKPESSRPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCL 114 (139)
Q Consensus 51 ~~y~f~a~~EqlR~pr~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICL 114 (139)
-||.-....-.||..+.-+||+|-.....+ + ..+-+..+-+.|.+.|.+++++
T Consensus 54 lgY~pn~~a~~l~~~~~~~Igvi~~~~~~~-----~------~~~~~~gi~~~a~~~g~~~~~~ 106 (355)
T 3e3m_A 54 MNYVPDQVAGSLTTKRSGFVGLLLPSLNNL-----H------FAQTAQSLTDVLEQGGLQLLLG 106 (355)
T ss_dssp -----------------CEEEEEESCSBCH-----H------HHHHHHHHHHHHHHTTCEEEEE
T ss_pred hCCCcCHHHHhhhcCCCCEEEEEeCCCCch-----H------HHHHHHHHHHHHHHCCCEEEEE
Confidence 467666656667777778899997654222 1 1122334455666779998764
No 108
>3ktc_A Xylose isomerase; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.54A {Pectobacterium atrosepticum SCRI1043}
Probab=26.02 E-value=65 Score=25.12 Aligned_cols=30 Identities=20% Similarity=0.320 Sum_probs=26.3
Q ss_pred CchhhHHHHHHHHHHHHHHHHhCCCeEEEc
Q psy3318 85 NVPQERSATYDRVEKLINAAGESGVNVLCL 114 (139)
Q Consensus 85 pv~~qk~anl~k~~~lI~~AA~~GanIICL 114 (139)
|-.+.++..++..++.|+.|+..|+..|++
T Consensus 97 ~d~~~r~~~i~~~~~~i~~A~~LGa~~vv~ 126 (333)
T 3ktc_A 97 PDPAARAAAFELMHESAGIVRELGANYVKV 126 (333)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 456778889999999999999999999875
No 109
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=25.91 E-value=1.3e+02 Score=22.07 Aligned_cols=41 Identities=10% Similarity=0.154 Sum_probs=21.7
Q ss_pred CCCCccceEEEEecccCCCCCCCCchhhHHHHHHHHH-HHHHHHHhCCCeEEEc
Q psy3318 62 SRPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVE-KLINAAGESGVNVLCL 114 (139)
Q Consensus 62 lR~pr~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~-~lI~~AA~~GanIICL 114 (139)
||..+..+||+|-..... |+ +..+. .+-+.|.+.|.+++++
T Consensus 3 L~~~~~~~Ig~i~~~~~~-----~~-------~~~~~~gi~~~a~~~g~~~~~~ 44 (290)
T 3clk_A 3 LVKKSSNVIAAVVSSVRT-----NF-------AQQILDGIQEEAHKNGYNLIIV 44 (290)
T ss_dssp -----CCEEEEECCCCSS-----SH-------HHHHHHHHHHHHHTTTCEEEEE
T ss_pred cccccCCEEEEEeCCCCC-----hH-------HHHHHHHHHHHHHHcCCeEEEE
Confidence 566777899999764322 22 23333 3444556679998765
No 110
>2qw5_A Xylose isomerase-like TIM barrel; putative sugar phosphate isomerase/epimerase; 1.78A {Anabaena variabilis atcc 29413}
Probab=25.47 E-value=88 Score=24.16 Aligned_cols=28 Identities=11% Similarity=0.318 Sum_probs=24.5
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCeEEEc
Q psy3318 87 PQERSATYDRVEKLINAAGESGVNVLCL 114 (139)
Q Consensus 87 ~~qk~anl~k~~~lI~~AA~~GanIICL 114 (139)
.+.+++.++.....|+.|+..|+..|+.
T Consensus 101 ~~~r~~~~~~~~~~i~~A~~lG~~~v~~ 128 (335)
T 2qw5_A 101 PEQRQEALEYLKSRVDITAALGGEIMMG 128 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEec
Confidence 4567888999999999999999999953
No 111
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=25.18 E-value=1e+02 Score=23.03 Aligned_cols=47 Identities=26% Similarity=0.250 Sum_probs=21.2
Q ss_pred CCCCCCCCCccceEEEEecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEc
Q psy3318 57 AKPESSRPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCL 114 (139)
Q Consensus 57 a~~EqlR~pr~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICL 114 (139)
+..-.||..+.-+||+|=..... |+- .+-...+-++|.+.|.+++++
T Consensus 5 ~~Ar~L~~~~s~~Igvi~~~~~~-----~~~------~~~~~gi~~~a~~~g~~~~~~ 51 (303)
T 3kke_A 5 ARARALRHSRSGTIGLIVPDVNN-----AVF------ADMFSGVQMAASGHSTDVLLG 51 (303)
T ss_dssp ------------CEEEEESCTTS-----TTH------HHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHhhCCCCEEEEEeCCCcC-----hHH------HHHHHHHHHHHHHCCCEEEEE
Confidence 33446777777889999765432 221 122334455666779999865
No 112
>3k6t_A Female germline-specific tumor suppressor GLD-1; QUA1 homodimerization domain, helix-turn-helix motif, hydrophobic homodimer interface; 2.04A {Caenorhabditis elegans} PDB: 3kbl_A
Probab=24.90 E-value=32 Score=22.54 Aligned_cols=33 Identities=30% Similarity=0.561 Sum_probs=22.7
Q ss_pred CcchHHHHHHcCCChHHHHHHHHHHhCCCCccccCCcc
Q psy3318 6 PFESVETILQKYIPEDELKLVNAVLYGEPLKKLYLPNS 43 (139)
Q Consensus 6 ~~~sle~~l~~~lp~~~l~ev~riLyG~~~~~l~lp~~ 43 (139)
-|.-||.+|+ +|...|+--||.....+++||+.
T Consensus 26 ~f~HlerLLd-----eEI~RVR~~Lf~~~~~~~eLPep 58 (60)
T 3k6t_A 26 MFSNVERLLD-----DEIGRVRVALFQTEFPRVELPEP 58 (60)
T ss_dssp TCHHHHHHHH-----HHHHHHHHHHHHHHSTTCCC---
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHccCCCcccCCCC
Confidence 4667888886 56777888899866667888853
No 113
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=24.89 E-value=1.6e+02 Score=21.37 Aligned_cols=42 Identities=10% Similarity=0.071 Sum_probs=22.6
Q ss_pred CCCCccceEEEEecc-----cCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEc
Q psy3318 62 SRPPRLVRVGIIQNH-----IGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCL 114 (139)
Q Consensus 62 lR~pr~VrVGLIQ~s-----i~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICL 114 (139)
||..+.-+||+|-.. ... |+ ...-...+-++|.+.|.+++++
T Consensus 3 L~~~~~~~Igvi~~~~~~~~~~~-----~~------~~~~~~gi~~~a~~~g~~~~~~ 49 (292)
T 3k4h_A 3 LANQTTKTLGLVMPSSASKAFQN-----PF------FPEVIRGISSFAHVEGYALYMS 49 (292)
T ss_dssp ----CCCEEEEECSSCHHHHTTS-----TH------HHHHHHHHHHHHHHTTCEEEEC
T ss_pred cccCCCCEEEEEecCCccccccC-----HH------HHHHHHHHHHHHHHcCCEEEEE
Confidence 566677889999765 322 22 1222334455666779998864
No 114
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=24.34 E-value=1.4e+02 Score=21.88 Aligned_cols=42 Identities=14% Similarity=0.290 Sum_probs=23.3
Q ss_pred CCCCCccceEEEEecccCCCCCCCCchhhHHHHHHHHH-HHHHHHHhCCCe-EEEc
Q psy3318 61 SSRPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVE-KLINAAGESGVN-VLCL 114 (139)
Q Consensus 61 qlR~pr~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~-~lI~~AA~~Gan-IICL 114 (139)
.||..+.-+||+|-.....+ -+..+. .+-++|.+.|.+ ++++
T Consensus 4 ~L~~~~~~~Igvi~~~~~~~------------~~~~~~~gi~~~a~~~g~~~~~~~ 47 (277)
T 3hs3_A 4 TLYQKKSKMIGIIIPDLNNR------------FYAQIIDGIQEVIQKEGYTALISF 47 (277)
T ss_dssp ----CCCCEEEEEESCTTSH------------HHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred hhhcCCCCEEEEEeCCCCCh------------hHHHHHHHHHHHHHHCCCCEEEEE
Confidence 46677778999998754221 233333 444556677999 6653
No 115
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}
Probab=24.24 E-value=1.2e+02 Score=26.47 Aligned_cols=72 Identities=13% Similarity=0.146 Sum_probs=42.9
Q ss_pred eeeeeeeccCCCC--CC-CCCccceEEEEecccCCCCCC--C----CchhhHHHH----HHHHHHHHHHHHhCCCeEEEc
Q psy3318 48 FNVVGYKFGAKPE--SS-RPPRLVRVGIIQNHIGNSTVS--C----NVPQERSAT----YDRVEKLINAAGESGVNVLCL 114 (139)
Q Consensus 48 Fel~~y~f~a~~E--ql-R~pr~VrVGLIQ~si~~~t~~--a----pv~~qk~an----l~k~~~lI~~AA~~GanIICL 114 (139)
.=+.|+.|+-... .+ +.-...||.++..++..+.+. + .-..+.+.. .+.+..+++.-++.|++||+.
T Consensus 221 ~lv~G~v~dk~~~~~~m~~~ien~kIll~d~~Le~~k~e~~~~v~Iss~~~l~~~~~~E~~~l~~~vekI~~~g~~vvI~ 300 (553)
T 3ko1_A 221 QLVYGIVVDKEVVHPGMPKRLENAKIALIDASLEVEKPELDAEIRINDPTQMQKFLDEEENLIKEKVDKILATGANVIIC 300 (553)
T ss_dssp EEESEEEECSCBSCTTSCSCCBSCEEEEECSCBSCCCCTTTCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEEC
T ss_pred eeeEEEEecccccCCCCccccccceEEEecCcccccCcccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhhcceEEEe
Confidence 4467888864422 22 222346899999865433110 0 012333332 345778889999999999998
Q ss_pred ccccc
Q psy3318 115 QEAWR 119 (139)
Q Consensus 115 QElf~ 119 (139)
++-..
T Consensus 301 ~~~I~ 305 (553)
T 3ko1_A 301 QKGID 305 (553)
T ss_dssp SSCBC
T ss_pred ccChH
Confidence 87654
No 116
>3aam_A Endonuclease IV, endoiv; DNA repair, base excision repair, BER, TIM barrel, endonucle hydrolase, structural genomics, NPPSFA; 1.58A {Thermus thermophilus}
Probab=24.23 E-value=67 Score=23.82 Aligned_cols=27 Identities=11% Similarity=0.126 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCeEEEc
Q psy3318 88 QERSATYDRVEKLINAAGESGVNVLCL 114 (139)
Q Consensus 88 ~qk~anl~k~~~lI~~AA~~GanIICL 114 (139)
+.+++.++.....|+.|+..|+..|++
T Consensus 81 ~~r~~~~~~~~~~i~~a~~lGa~~vv~ 107 (270)
T 3aam_A 81 ELWEKSVASLADDLEKAALLGVEYVVV 107 (270)
T ss_dssp THHHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 567888999999999999999999874
No 117
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*
Probab=24.22 E-value=78 Score=23.62 Aligned_cols=30 Identities=13% Similarity=0.053 Sum_probs=25.7
Q ss_pred CchhhHHHHHHHHHHHHHHHHhCCCeEEEc
Q psy3318 85 NVPQERSATYDRVEKLINAAGESGVNVLCL 114 (139)
Q Consensus 85 pv~~qk~anl~k~~~lI~~AA~~GanIICL 114 (139)
|-.+.+++.++...+.|+.|+..|+..|+.
T Consensus 78 ~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~ 107 (294)
T 3vni_A 78 PDPDIRKNAKAFYTDLLKRLYKLDVHLIGG 107 (294)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCeeec
Confidence 445678889999999999999999999963
No 118
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=23.86 E-value=71 Score=23.47 Aligned_cols=26 Identities=4% Similarity=-0.078 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHhCCCeEEEc
Q psy3318 89 ERSATYDRVEKLINAAGESGVNVLCL 114 (139)
Q Consensus 89 qk~anl~k~~~lI~~AA~~GanIICL 114 (139)
.+++.++...+.|+.|+..|+..|++
T Consensus 78 ~~~~~~~~~~~~i~~A~~lG~~~v~~ 103 (281)
T 3u0h_A 78 VFLRELSLLPDRARLCARLGARSVTA 103 (281)
T ss_dssp HHHHHHHTHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 46667888999999999999999984
No 119
>1g1p_A Conotoxin EVIA; three disulfide linkages, CIS/trans isomerism of Leu12- Pro13 peptide bond, hydroxyproline; HET: HYP; NMR {Synthetic} SCOP: g.3.6.1 PDB: 1g1z_A*
Probab=23.73 E-value=23 Score=20.39 Aligned_cols=8 Identities=25% Similarity=0.426 Sum_probs=6.5
Q ss_pred CCCCCCch
Q psy3318 120 RPDRYGSQ 127 (139)
Q Consensus 120 ~PyaFCt~ 127 (139)
-||.||.-
T Consensus 5 kpygfcsl 12 (33)
T 1g1p_A 5 KPYGFCSL 12 (33)
T ss_dssp CTTSBCCC
T ss_pred ccccceec
Confidence 59999974
No 120
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=23.60 E-value=1.3e+02 Score=22.03 Aligned_cols=41 Identities=17% Similarity=0.183 Sum_probs=22.0
Q ss_pred CCCCccceEEEEecccCCCCCCCCchhhHHHHHHHHH-HHHHHHHhCCCeEEEc
Q psy3318 62 SRPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVE-KLINAAGESGVNVLCL 114 (139)
Q Consensus 62 lR~pr~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~-~lI~~AA~~GanIICL 114 (139)
||..+..+||+|-..... | -+..+. .+-+.|.+.|.+++++
T Consensus 3 L~~~~~~~Igvi~~~~~~-----~-------~~~~~~~gi~~~~~~~g~~~~~~ 44 (285)
T 3c3k_A 3 LRTAKTGMLLVMVSNIAN-----P-------FCAAVVKGIEKTAEKNGYRILLC 44 (285)
T ss_dssp ----CCCEEEEEESCTTS-----H-------HHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CcCCCCCEEEEEeCCCCC-----c-------hHHHHHHHHHHHHHHcCCEEEEE
Confidence 566777899999864321 1 233333 3344455679998764
No 121
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=23.56 E-value=1.4e+02 Score=21.95 Aligned_cols=42 Identities=26% Similarity=0.304 Sum_probs=23.2
Q ss_pred CCCCccceEEEEecccCCCCCCCCchhhHHHHHHH-HHHHHHHHHhCCCeEEEcc
Q psy3318 62 SRPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDR-VEKLINAAGESGVNVLCLQ 115 (139)
Q Consensus 62 lR~pr~VrVGLIQ~si~~~t~~apv~~qk~anl~k-~~~lI~~AA~~GanIICLQ 115 (139)
||..+.-+||+|-..... | -+.. ...+-++|.+.|.+++++.
T Consensus 3 L~~~~~~~Igvv~~~~~~-----~-------~~~~~~~gi~~~a~~~g~~~~~~~ 45 (291)
T 3egc_A 3 LRSKRSNVVGLIVSDIEN-----V-------FFAEVASGVESEARHKGYSVLLAN 45 (291)
T ss_dssp ----CCCEEEEEESCTTS-----H-------HHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CccCCCcEEEEEECCCcc-----h-------HHHHHHHHHHHHHHHCCCEEEEEe
Confidence 566677889999865422 1 2233 3344455667799998753
No 122
>2y1b_A RCSF protein, putative outer membrane protein, signal; phosphorelay, mucoidity, colanic acid; HET: I3C; 2.00A {Escherichia coli} PDB: 2l8y_A
Probab=23.07 E-value=90 Score=23.05 Aligned_cols=33 Identities=9% Similarity=-0.038 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhCCCeEEEccccccCCC-CCCchh
Q psy3318 96 RVEKLINAAGESGVNVLCLQEAWRRPD-RYGSQV 128 (139)
Q Consensus 96 k~~~lI~~AA~~GanIICLQElf~~Py-aFCt~E 128 (139)
....|-..|+..|||=|+|.+++..++ .=|.+.
T Consensus 74 Ar~~lr~kAa~~gANaVll~qC~~~~~~~gC~~~ 107 (128)
T 2y1b_A 74 ARKRMQINASKMKANAVLLHSCEVTSGTPGCYRQ 107 (128)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEEEEESCCTTCSEE
T ss_pred HHHHHHHHHHHcCCCEEEEEeeeccCCCCCccce
Confidence 334577788999999999999997653 556543
No 123
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}
Probab=23.01 E-value=57 Score=25.26 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=20.1
Q ss_pred HHHHHHHhCCCeEEEccccccCCC
Q psy3318 99 KLINAAGESGVNVLCLQEAWRRPD 122 (139)
Q Consensus 99 ~lI~~AA~~GanIICLQElf~~Py 122 (139)
++.+..+..||+||+.|=.|..++
T Consensus 172 e~~r~l~~~Ga~li~~ps~~~~~~ 195 (283)
T 3hkx_A 172 EMVRAAAARGAQLVLVPTALAGDE 195 (283)
T ss_dssp HHHHHHHHTTCSEEEEECCCBSCC
T ss_pred HHHHHHHHCCCCEEEECCCCCCcc
Confidence 466777889999999999998776
No 124
>3lqy_A Putative isochorismatase hydrolase; structural genomics, PSI-2, PROT structure initiative, midwest center for structural genomic; 1.75A {Oleispira antarctica} SCOP: c.33.1.0
Probab=22.78 E-value=1.5e+02 Score=21.52 Aligned_cols=32 Identities=16% Similarity=0.263 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCeEEEcccccc
Q psy3318 88 QERSATYDRVEKLINAAGESGVNVLCLQEAWR 119 (139)
Q Consensus 88 ~qk~anl~k~~~lI~~AA~~GanIICLQElf~ 119 (139)
.+.++.+.++..+++.|-..|.-||..+-.+.
T Consensus 31 ~~~~~~i~~i~~l~~~ar~~g~pVi~t~~~~~ 62 (190)
T 3lqy_A 31 VGTEAAAEQGAKLLAKFRQQGLPVVHVRHEFP 62 (190)
T ss_dssp BTHHHHHHHHHHHHHHHHHTTCCEEEEEECC-
T ss_pred CCHHHHHHHHHHHHHHHHHCCCeEEEEEEecC
Confidence 35678899999999999999999998876554
No 125
>1vr4_A Hypothetical protein APC22750; structural genomics, pentamer, PSI, PR structure initiative, the midwest center for structural GEN MCSG; 2.09A {Bacillus cereus} SCOP: d.230.5.1 PDB: 2gtc_A
Probab=22.55 E-value=1e+02 Score=21.45 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEE
Q psy3318 91 SATYDRVEKLINAAGESGVNVLC 113 (139)
Q Consensus 91 ~anl~k~~~lI~~AA~~GanIIC 113 (139)
++--+...+|+++|.+.|||-|+
T Consensus 56 ~aR~~A~~rm~~~A~~lGAnAVV 78 (103)
T 1vr4_A 56 EARDIAMDEMKELAKQKGANAIV 78 (103)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEE
Confidence 45556677899999999999865
No 126
>2l6a_A Nacht, LRR and PYD domains-containing protein 12; NLRP12, pyrin, death domain, signaling protein; NMR {Homo sapiens}
Probab=22.47 E-value=77 Score=21.95 Aligned_cols=22 Identities=27% Similarity=0.249 Sum_probs=19.2
Q ss_pred HHHHHHcCCChHHHHHHHHHHhC
Q psy3318 10 VETILQKYIPEDELKLVNAVLYG 32 (139)
Q Consensus 10 le~~l~~~lp~~~l~ev~riLyG 32 (139)
|-..|++ |..+||+.+|..|-.
T Consensus 15 Ll~~Le~-L~~~ElkkFK~~L~~ 36 (102)
T 2l6a_A 15 LSTYLEE-LEAVELKKFKLYLGT 36 (102)
T ss_dssp HHHHHTT-SCHHHHHHHHHHHHS
T ss_pred HHHHHHH-cCHHHHHHHHHHHcc
Confidence 7888865 999999999999975
No 127
>2jz7_A Selenium binding protein; NMR {Methanococcus vannielii}
Probab=22.18 E-value=75 Score=21.74 Aligned_cols=19 Identities=26% Similarity=0.179 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhCCCeEEE
Q psy3318 95 DRVEKLINAAGESGVNVLC 113 (139)
Q Consensus 95 ~k~~~lI~~AA~~GanIIC 113 (139)
....+|++.|.+.|||-|+
T Consensus 35 ~A~~rm~e~A~~lGAnAVV 53 (81)
T 2jz7_A 35 EIVENLRKQVKAKGGMGLI 53 (81)
T ss_dssp HHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHcCCCEEE
Confidence 3445799999999999876
No 128
>1muw_A Xylose isomerase; atomic resolution, disorder; 0.86A {Streptomyces olivochromogenes} SCOP: c.1.15.3 PDB: 1s5m_A* 1s5n_A* 2gyi_A* 1xyb_A* 1xyc_A* 1xya_A* 1xyl_A 1xym_A* 1dxi_A 3gnx_A* 1gw9_A* 1xib_A 1xic_A* 1xid_A* 1xie_A* 1xif_A* 1xig_A* 1xih_A* 1xii_A* 1xij_A ...
Probab=21.78 E-value=84 Score=25.32 Aligned_cols=30 Identities=20% Similarity=0.149 Sum_probs=25.7
Q ss_pred CchhhHHHHHHHHHHHHHHHHhCCCeEEEc
Q psy3318 85 NVPQERSATYDRVEKLINAAGESGVNVLCL 114 (139)
Q Consensus 85 pv~~qk~anl~k~~~lI~~AA~~GanIICL 114 (139)
|-.+.++..++...+.|+.|+..|++.|++
T Consensus 106 ~d~~~r~~~i~~~~~~i~~A~~LGa~~vvv 135 (386)
T 1muw_A 106 NDRDVRRYALRKTIRNIDLAVELGAKTYVA 135 (386)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 344568888999999999999999999875
No 129
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=21.75 E-value=1.5e+02 Score=25.42 Aligned_cols=71 Identities=13% Similarity=0.163 Sum_probs=41.7
Q ss_pred eeeeeeccCCCC--CC-CCCccceEEEEecccCCCCCC----CCc--hhhH----HHHHHHHHHHHHHHHhCCCeEEEcc
Q psy3318 49 NVVGYKFGAKPE--SS-RPPRLVRVGIIQNHIGNSTVS----CNV--PQER----SATYDRVEKLINAAGESGVNVLCLQ 115 (139)
Q Consensus 49 el~~y~f~a~~E--ql-R~pr~VrVGLIQ~si~~~t~~----apv--~~qk----~anl~k~~~lI~~AA~~GanIICLQ 115 (139)
=+.|+.|+-... ++ +.....||+++......+.+. --+ .++. ++-.+....+++..++.|++||+.+
T Consensus 202 lv~G~~~dk~~~~~~m~~~~~~~kIall~~~le~~k~~~~~~~~is~~~~l~~~~~~E~~~l~~~lekI~~~g~~vvi~~ 281 (515)
T 3iyg_E 202 LIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLAVCQ 281 (515)
T ss_pred EEeeEEEecccccccccccCCCceEEEEcCccccccccccceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 367888865432 22 222346899999876544210 001 1222 1223446778888899999999988
Q ss_pred cccc
Q psy3318 116 EAWR 119 (139)
Q Consensus 116 Elf~ 119 (139)
+-..
T Consensus 282 ~~I~ 285 (515)
T 3iyg_E 282 WGFD 285 (515)
T ss_pred CCCC
Confidence 7653
No 130
>3i4a_A N(G),N(G)-dimethylarginine dimethylaminohydrolase 1; DDAH, nitric oxide synthase regulation, acetylation, metal-binding, zinc; HET: LN5; 1.90A {Homo sapiens} PDB: 3i2e_A* 3p8e_A* 3p8p_A*
Probab=21.22 E-value=1.4e+02 Score=24.08 Aligned_cols=39 Identities=15% Similarity=0.161 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHHH-hCCCeEEEccccccCCCCCCch
Q psy3318 89 ERSATYDRVEKLINAAG-ESGVNVLCLQEAWRRPDRYGSQ 127 (139)
Q Consensus 89 qk~anl~k~~~lI~~AA-~~GanIICLQElf~~PyaFCt~ 127 (139)
+.+.-.+....+++.-- +.|++|+.++-.=.+|-..+++
T Consensus 62 d~~~A~~q~~~l~~~Lr~~~Gv~V~~l~~~~~~Pd~vF~r 101 (308)
T 3i4a_A 62 DVARAERQHQLYVGVLGSKLGLQVVELPADESLPDCVFVE 101 (308)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCCEEEEECCCTTCTTTTCGG
T ss_pred CHHHHHHHHHHHHHHHhhcCCCEEEEcCCCCCCCCeEeec
Confidence 46667788888998887 8999999988665566533333
No 131
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=21.20 E-value=1.5e+02 Score=21.83 Aligned_cols=41 Identities=12% Similarity=0.042 Sum_probs=21.3
Q ss_pred CCCCccceEEEEecccCCCCCCCCchhhHHHHHHHHHH-HHHHHHhCCCeEEEc
Q psy3318 62 SRPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEK-LINAAGESGVNVLCL 114 (139)
Q Consensus 62 lR~pr~VrVGLIQ~si~~~t~~apv~~qk~anl~k~~~-lI~~AA~~GanIICL 114 (139)
||..+..+||+|-..... .-+..+.. +-++|.+.|.+++++
T Consensus 3 L~~~~~~~Ig~i~~~~~~------------~~~~~~~~gi~~~a~~~g~~~~~~ 44 (290)
T 2rgy_A 3 LATQQLGIIGLFVPTFFG------------SYYGTILKQTDLELRAVHRHVVVA 44 (290)
T ss_dssp -----CCEEEEECSCSCS------------HHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred cccCCCCeEEEEeCCCCC------------chHHHHHHHHHHHHHHCCCEEEEE
Confidence 566777889999764321 12333333 344556679998754
No 132
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1 PDB: 1k30_A
Probab=21.09 E-value=1e+02 Score=26.29 Aligned_cols=30 Identities=7% Similarity=0.029 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCeEEEcccc
Q psy3318 88 QERSATYDRVEKLINAAGESGVNVLCLQEA 117 (139)
Q Consensus 88 ~qk~anl~k~~~lI~~AA~~GanIICLQEl 117 (139)
+++.+|++-+.++++.....|..|++|||=
T Consensus 203 ~~~r~n~ksl~~~~~~Lk~GG~sI~IFPEG 232 (367)
T 1iuq_A 203 TKRKANTRSLKEMALLLRGGSQLIWIAPSG 232 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCEEEECTTC
T ss_pred hhhHHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 455567777777777777779999999996
No 133
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=21.03 E-value=1.4e+02 Score=21.71 Aligned_cols=41 Identities=15% Similarity=0.181 Sum_probs=20.5
Q ss_pred CCCCccceEEEEecccCCCCCCCCchhhHHHHHHHH-HHHHHHHHhCCCeEEEc
Q psy3318 62 SRPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRV-EKLINAAGESGVNVLCL 114 (139)
Q Consensus 62 lR~pr~VrVGLIQ~si~~~t~~apv~~qk~anl~k~-~~lI~~AA~~GanIICL 114 (139)
||..+.-+||+|-.....+ -+..+ ..+-++|.+.|.+++++
T Consensus 3 L~~~~~~~Ig~i~~~~~~~------------~~~~~~~gi~~~~~~~g~~~~~~ 44 (277)
T 3e61_A 3 LYKRKSKLIGLLLPDMSNP------------FFTLIARGVEDVALAHGYQVLIG 44 (277)
T ss_dssp -------CEEEEESCTTSH------------HHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CccCCCCEEEEEECCCCCH------------HHHHHHHHHHHHHHHCCCEEEEE
Confidence 5666677899997653221 23333 34455666779999864
No 134
>3o94_A Nicotinamidase; hydrolase; 1.60A {Streptococcus pneumoniae} PDB: 3o90_A 3o91_A* 3o92_A* 3o93_A* 3s2s_A
Probab=20.91 E-value=67 Score=24.48 Aligned_cols=46 Identities=15% Similarity=0.091 Sum_probs=31.7
Q ss_pred EecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEccccc
Q psy3318 73 IQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAW 118 (139)
Q Consensus 73 IQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICLQElf 118 (139)
+|+.+..|...-++....++.+.++.++++.|-+.|..||..+..+
T Consensus 30 ~QndF~~p~G~l~~~~~~~~ii~~i~~Li~~aR~~g~pVi~t~d~h 75 (211)
T 3o94_A 30 YTEDFVADSGKLTAGAPAQAISDAISKVTRLAFERGDYIFFTIDAH 75 (211)
T ss_dssp CBHHHHSTTCTTCCCHHHHTTHHHHHHHHHHHHHTTCEEEEEEECB
T ss_pred CchhhhCCCCcccCCccHHHHHHHHHHHHHHHHHcCCeEEEEEeec
Confidence 4777654322123333456778899999999999999999877544
No 135
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A
Probab=20.69 E-value=1.7e+02 Score=25.41 Aligned_cols=72 Identities=15% Similarity=0.182 Sum_probs=42.1
Q ss_pred eeeeeeeccCCCCCCCCCc---cceEEEEecccCCCCCCC------CchhhHHHH----HHHHHHHHHHHHhCCCeEEEc
Q psy3318 48 FNVVGYKFGAKPESSRPPR---LVRVGIIQNHIGNSTVSC------NVPQERSAT----YDRVEKLINAAGESGVNVLCL 114 (139)
Q Consensus 48 Fel~~y~f~a~~EqlR~pr---~VrVGLIQ~si~~~t~~a------pv~~qk~an----l~k~~~lI~~AA~~GanIICL 114 (139)
.=+.|+.|+-....-..|+ ..||.++..++..+.+.. ....+.+.. .+.+..+++.-++.|+|||+.
T Consensus 207 ~lv~G~v~dk~~~~~~m~~~~~n~kIll~~~~Le~~k~e~~~~v~Iss~~~l~~~~~~E~~~l~~~ve~I~~~g~~vvi~ 286 (543)
T 3ruv_A 207 ELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFC 286 (543)
T ss_dssp EEESSEEESCCCSCTTSCSEEEEEEEEEESSCBSCCCCSSCCCEEECSTTHHHHHHHHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred eeecceEEeccccCccccccccCcEEEEEcccccccccccCceeEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 4467888865432212233 358999988654321100 011333333 345778888888999999998
Q ss_pred ccccc
Q psy3318 115 QEAWR 119 (139)
Q Consensus 115 QElf~ 119 (139)
++-..
T Consensus 287 ~~~I~ 291 (543)
T 3ruv_A 287 QKGID 291 (543)
T ss_dssp SSCBC
T ss_pred eCCcc
Confidence 87553
No 136
>3hu5_A Isochorismatase family protein; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; 1.50A {Desulfovibrio vulgaris}
Probab=20.30 E-value=71 Score=23.75 Aligned_cols=43 Identities=19% Similarity=0.136 Sum_probs=30.3
Q ss_pred EecccCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCeEEEc-cc
Q psy3318 73 IQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCL-QE 116 (139)
Q Consensus 73 IQ~si~~~t~~apv~~qk~anl~k~~~lI~~AA~~GanIICL-QE 116 (139)
+|+....|.. ..-..+.++.+.++..+++.|-..|..||.. ++
T Consensus 16 ~Q~~f~~~~g-~l~~~~~~~iv~~i~~L~~~ar~~g~pVi~~~~~ 59 (204)
T 3hu5_A 16 MQNDFVLPGA-PACVEGAMGTVPVIAGLLAKARAEGWMVLHVVRA 59 (204)
T ss_dssp CBHHHHSTTS-TTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred CchhhhCCCC-cccccCHHHHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 4776653322 2223456788999999999999999999874 44
No 137
>3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei}
Probab=20.28 E-value=19 Score=29.94 Aligned_cols=23 Identities=30% Similarity=0.248 Sum_probs=19.4
Q ss_pred HHHHHHhCCCeEEEccccccCCCCCC
Q psy3318 100 LINAAGESGVNVLCLQEAWRRPDRYG 125 (139)
Q Consensus 100 lI~~AA~~GanIICLQElf~~PyaFC 125 (139)
.|+.|++.||+.| |+++.+|+=+
T Consensus 168 qI~aA~~~GAd~I---ELhTG~YA~a 190 (278)
T 3gk0_A 168 QIRAAHETGAPVI---ELHTGRYADA 190 (278)
T ss_dssp HHHHHHHHTCSEE---EECCHHHHTC
T ss_pred HHHHHHHhCcCEE---EEecchhhcc
Confidence 5788889999998 9999999644
No 138
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=20.14 E-value=1.5e+02 Score=21.87 Aligned_cols=42 Identities=17% Similarity=0.237 Sum_probs=21.7
Q ss_pred CCCCCccceEEEEecccCCCCCCCCchhhHHHHHHHH-HHHHHHHHhCCCeEEEcc
Q psy3318 61 SSRPPRLVRVGIIQNHIGNSTVSCNVPQERSATYDRV-EKLINAAGESGVNVLCLQ 115 (139)
Q Consensus 61 qlR~pr~VrVGLIQ~si~~~t~~apv~~qk~anl~k~-~~lI~~AA~~GanIICLQ 115 (139)
.||..+.-+||+|- ....| -+..+ ..+-++|.+.|.+++++.
T Consensus 6 ~L~~~~~~~Igvi~-~~~~~------------~~~~~~~gi~~~a~~~g~~~~~~~ 48 (289)
T 3k9c_A 6 KLRQASSRLLGVVF-ELQQP------------FHGDLVEQIYAAATRRGYDVMLSA 48 (289)
T ss_dssp -------CEEEEEE-ETTCH------------HHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred hhhcCCCCEEEEEE-ecCCc------------hHHHHHHHHHHHHHHCCCEEEEEe
Confidence 46667778899998 54222 23333 344556667799998754
Done!