RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3318
(139 letters)
>d1j31a_ d.160.1.2 (A:) Hypothetical protein PH0642 {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 262
Score = 38.5 bits (88), Expect = 1e-04
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 8/52 (15%)
Query: 67 LVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAW 118
+V+VG IQ E Y + EKLI A + G ++ L E +
Sbjct: 1 MVKVGYIQMEP--------KILELDKNYSKAEKLIKEASKEGAKLVVLPELF 44
>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal
domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Length = 271
Score = 37.0 bits (84), Expect = 3e-04
Identities = 7/51 (13%), Positives = 16/51 (31%), Gaps = 9/51 (17%)
Query: 68 VRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAW 118
+ + Q + + + +I AGE ++ L E +
Sbjct: 6 HFIAVCQ---------MTSDNDLEKNFQAAKNMIERAGEKKCEMVFLPECF 47
>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase
{Agrobacterium sp. [TaxId: 361]}
Length = 303
Score = 35.4 bits (80), Expect = 0.001
Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 6/53 (11%)
Query: 66 RLVRVGIIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAW 118
R + + + Q G + R R+ ++ A G N + E
Sbjct: 2 RQMILAVGQ--QGPIARAET----REQVVVRLLDMLTKAASRGANFIVFPELA 48
>d1wdua_ d.151.1.1 (A:) Endonuclease domain of TRAS1 retrotransposon
(ORF2) {Silkworm (Bombyx mori) [TaxId: 7091]}
Length = 228
Score = 30.4 bits (67), Expect = 0.047
Identities = 7/42 (16%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Query: 82 VSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDR 123
+ N+ +++ AT +L A + +QE + +
Sbjct: 6 LQANLQRKKLAT----AELAIEAATRKAAIALIQEPYVGGAK 43
>d1sr4b_ d.151.1.1 (B:) Cytolethal distending toxin subunit B
{Haemophilus ducreyi [TaxId: 730]}
Length = 261
Score = 27.9 bits (60), Expect = 0.40
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Query: 83 SCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDR 123
+ E + + L E G ++L +QEA P
Sbjct: 14 GSSAVNESKWNINVRQLLSG---EQGADILMVQEAGSLPSS 51
>d2f1na1 d.151.1.1 (A:1-250) Cytolethal distending toxin subunit B
{Escherichia coli [TaxId: 562]}
Length = 250
Score = 26.9 bits (58), Expect = 0.81
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 83 SCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDR 123
+ E + + + GE+ V++L +QEA P
Sbjct: 14 GASATTESKWNINVRQLIS---GENAVDILAVQEAGSPPST 51
>d1zwxa1 d.151.1.3 (A:41-333) Sphingomyelin phosphodiesterase C
{Listeria ivanovii [TaxId: 1638]}
Length = 293
Score = 26.4 bits (56), Expect = 1.2
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 96 RVEKLINAAGESGVNVLCLQEAWRRPDR 123
R + + A +V+ L EA+
Sbjct: 28 RADLIAQADYMKNNDVVILNEAFDTSAS 55
>d2zdra2 c.1.10.6 (A:2-281) Capsule biosynthesis protein SiaC,
N-terminal domain {Neisseria meningitidis [TaxId: 487]}
Length = 280
Score = 26.1 bits (56), Expect = 1.9
Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 21/73 (28%)
Query: 44 KSNEFNVVGYKFGAKPESSRPPRLV-RVGIIQNHIGNSTVSCNVPQERSATYDRVEKLIN 102
+NEF + G + P ++ +GI NH G+ ++++
Sbjct: 2 NNNEFKIGNRSVG----YNHEPLIICEIGI--NHEGS--------------LKTAFEMVD 41
Query: 103 AAGESGVNVLCLQ 115
AA +G V+ Q
Sbjct: 42 AAYNAGAEVVKHQ 54
>d3d4ub1 g.9.1.3 (B:1-37) Carboxypeptidase inhibitor {Tick
(Rhipicephalus bursa) [TaxId: 67831]}
Length = 37
Score = 23.8 bits (51), Expect = 2.3
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Query: 51 VGYKFGAKPESSRPPRLVRVGIIQNHIGNSTVSCNVPQ 88
V FG P+S P R+ ++ G STV C++ +
Sbjct: 4 VSKGFGCLPQSDCPQEA-RL----SYGGCSTVCCDLSK 36
>d2ddra1 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesterase C
{Bacillus cereus [TaxId: 1396]}
Length = 299
Score = 25.4 bits (53), Expect = 3.3
Identities = 5/29 (17%), Positives = 11/29 (37%)
Query: 95 DRVEKLINAAGESGVNVLCLQEAWRRPDR 123
+R + + A +V+ L E +
Sbjct: 26 ERADLIGAADYIKNQDVVILNEVFDNSAS 54
>d1vlia2 c.1.10.6 (A:2-296) Spore coat polysaccharide biosynthesis
protein SpsE, N-terminal domain {Bacillus subtilis
[TaxId: 1423]}
Length = 295
Score = 25.0 bits (53), Expect = 3.5
Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 16/65 (24%)
Query: 72 IIQNHIGNSTVSCNVPQERSATYDRVEKLINAAGESGVNVLCLQEAWRRPDRYGSQVYLI 131
NH G D+ LI+AA E+G + + Q + DR + +
Sbjct: 22 AGINHDGK--------------LDQAFALIDAAAEAGADAVKFQ--MFQADRMYQKDPGL 65
Query: 132 VKRQS 136
K +
Sbjct: 66 YKTAA 70
>d1li4a2 c.23.12.3 (A:3-189,A:353-432) S-adenosylhomocystein
hydrolase {Human (Homo sapiens) [TaxId: 9606]}
Length = 267
Score = 24.4 bits (53), Expect = 5.6
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 104 AGESGVNVLCLQE-AWRRPDRYGSQVYLIVK 133
S N + Q W PD+Y V+ + K
Sbjct: 193 MSNSFTNQVMAQIELWTHPDKYPVGVHFLPK 223
>d2vdfa1 f.4.4.2 (A:7-253) Outer membrane adhesin/invasin OpcA
{Neisseria meningitidis [TaxId: 487]}
Length = 247
Score = 24.1 bits (52), Expect = 6.2
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 28 AVLYGEPLKKLYLPNSKSNEFNV-VGYKF 55
+V L +P + E+ + VG KF
Sbjct: 219 SVTTKSGDVSLTIPKTSIREYGLRVGIKF 247
>d1tzva_ a.79.1.1 (A:) Antitermination factor NusB {Thermotoga
maritima [TaxId: 2336]}
Length = 141
Score = 23.6 bits (50), Expect = 7.7
Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 8 ESVETILQKYIPEDELKLVNAVL 30
E++E I ++Y E+ K VN +L
Sbjct: 106 EAIE-IAKRYGTENSGKFVNGIL 127
>d1ey1a_ a.79.1.1 (A:) Antitermination factor NusB {Escherichia coli
[TaxId: 562]}
Length = 139
Score = 23.5 bits (50), Expect = 7.8
Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 8 ESVETILQKYIPEDELKLVNAVL 30
E++E + + + ED K VN VL
Sbjct: 106 EAIE-LAKSFGAEDSHKFVNGVL 127
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.133 0.382
Gapped
Lambda K H
0.267 0.0562 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 490,542
Number of extensions: 20349
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 17
Length of query: 139
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 62
Effective length of database: 1,350,386
Effective search space: 83723932
Effective search space used: 83723932
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (22.6 bits)