Query psy3321
Match_columns 110
No_of_seqs 104 out of 241
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 21:59:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3321.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3321hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2uuu_A Alkyldihydroxyacetoneph 99.4 8.3E-13 2.8E-17 112.0 6.6 93 2-94 396-488 (584)
2 4bby_A Alkyldihydroxyacetoneph 99.2 1E-11 3.5E-16 106.0 6.7 93 2-94 467-559 (658)
3 1e8g_A Vanillyl-alcohol oxidas 97.3 0.00027 9.4E-09 59.1 5.2 87 2-93 354-453 (560)
4 1f0x_A DLDH, D-lactate dehydro 97.2 3.9E-05 1.3E-09 65.1 -0.5 81 2-86 393-480 (571)
5 3pm9_A Putative oxidoreductase 96.6 0.0019 6.6E-08 53.2 4.8 81 1-86 291-377 (476)
6 2exr_A Cytokinin dehydrogenase 95.2 0.0019 6.4E-08 53.7 -1.6 67 6-81 324-401 (524)
7 1wvf_A 4-cresol dehydrogenase 93.4 0.12 4.2E-06 42.5 5.5 84 2-93 323-422 (520)
8 1hsk_A UDP-N-acetylenolpyruvoy 60.4 7.1 0.00024 30.2 3.4 34 2-35 275-309 (326)
9 1l7b_A DNA ligase; BRCT, autos 54.2 6.7 0.00023 25.3 2.0 26 1-29 11-36 (92)
10 2fvt_A Conserved hypothetical 52.5 5.9 0.0002 27.5 1.6 28 39-66 76-103 (135)
11 2ab1_A Hypothetical protein; H 49.0 7.1 0.00024 26.5 1.5 29 38-66 69-98 (122)
12 2gm2_A Conserved hypothetical 48.1 7.4 0.00025 26.8 1.5 29 38-66 72-100 (132)
13 2fi9_A Outer membrane protein; 46.0 8.8 0.0003 26.1 1.6 26 41-66 79-104 (128)
14 4f54_A Uncharacterized protein 43.2 13 0.00046 27.3 2.3 36 68-105 52-88 (197)
15 3l3e_A DNA topoisomerase 2-bin 38.5 29 0.00098 22.0 3.2 28 1-31 19-46 (107)
16 3cpk_A Uncharacterized protein 36.0 15 0.00052 26.1 1.6 30 38-67 96-125 (150)
17 1zzk_A Heterogeneous nuclear r 35.7 35 0.0012 20.8 3.1 27 2-28 53-79 (82)
18 1qs0_A 2-oxoisovalerate dehydr 32.3 1.7E+02 0.0058 23.3 7.4 77 4-89 272-370 (407)
19 3l46_A Protein ECT2; alternati 32.0 47 0.0016 22.0 3.5 29 1-32 25-53 (112)
20 2ozl_A PDHE1-A type I, pyruvat 31.1 1E+02 0.0034 24.3 5.8 77 5-89 229-327 (365)
21 2l42_A DNA-binding protein RAP 30.4 28 0.00096 23.6 2.1 34 15-48 31-64 (106)
22 1w85_A Pyruvate dehydrogenase 30.0 2E+02 0.0068 22.5 7.4 77 4-89 232-331 (368)
23 3r8j_A Heme-binding protein 2; 26.8 68 0.0023 23.5 3.9 43 2-48 142-186 (212)
24 1ydo_A HMG-COA lyase; TIM-barr 26.7 68 0.0023 24.5 4.0 70 10-81 118-197 (307)
25 2kjw_A TS9, 30S ribosomal prot 26.0 65 0.0022 21.0 3.3 36 8-46 57-92 (96)
26 2d8m_A DNA-repair protein XRCC 25.5 44 0.0015 22.0 2.5 29 1-32 26-54 (129)
27 3av9_A Integrase, IN; protein- 24.9 1.1E+02 0.0037 20.5 4.5 66 15-85 68-135 (183)
28 2aee_A OPRT, oprtase, orotate 24.9 1.4E+02 0.0048 21.0 5.2 35 16-51 6-40 (211)
29 2cw6_A Hydroxymethylglutaryl-C 24.6 1.2E+02 0.004 22.7 5.0 70 13-83 120-198 (298)
30 3vej_A Ubiquitin-like protein 24.0 19 0.00066 20.5 0.3 15 65-79 4-18 (41)
31 1cxq_A Avian sarcoma virus int 23.9 1.5E+02 0.0052 19.1 6.5 72 15-91 54-128 (162)
32 3kks_A Integrase, IN; beta-str 23.7 1.4E+02 0.0047 18.6 4.8 67 16-87 42-110 (152)
33 4b0y_A Heme-binding protein 2; 23.5 88 0.003 23.2 4.0 43 2-48 161-205 (227)
34 3r3t_A 30S ribosomal protein S 23.3 86 0.0029 20.0 3.5 54 8-66 18-71 (99)
35 1c0m_A Protein (integrase); HI 22.0 2.1E+02 0.0072 20.0 5.9 70 13-87 51-123 (238)
36 3zzp_A TS9, ribosomal protein 21.9 77 0.0026 19.7 2.9 21 8-28 57-77 (77)
37 2wdq_C Succinate dehydrogenase 21.8 18 0.00063 24.3 -0.1 25 49-73 89-113 (129)
38 2cok_A Poly [ADP-ribose] polym 21.7 51 0.0017 21.9 2.1 30 1-33 14-43 (113)
39 1w1o_A Cytokinin dehydrogenase 21.3 10 0.00036 31.0 -1.7 72 10-84 344-419 (534)
40 4e17_B Catenin alpha-1; four h 21.3 59 0.002 18.4 2.0 26 65-90 6-35 (40)
41 3l3u_A POL polyprotein; DNA in 21.3 1.7E+02 0.0058 18.7 5.6 66 16-86 49-116 (163)
42 2ebu_A Replication factor C su 20.9 61 0.0021 21.5 2.4 29 1-31 26-54 (112)
43 2kxh_B Peptide of FAR upstream 20.4 90 0.0031 16.6 2.5 19 13-31 11-29 (31)
44 1ex4_A Integrase; SH3-like dom 20.2 2E+02 0.0068 20.1 5.2 63 17-84 50-114 (239)
No 1
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=99.35 E-value=8.3e-13 Score=111.96 Aligned_cols=93 Identities=19% Similarity=0.246 Sum_probs=87.6
Q ss_pred EEEEecChHHHHhHHHHHHHHHHHcCCcccCCcccccccccccchhhchHHHHhccCceeeeeccccccCcHHHHHHHHH
Q psy3321 2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKK 81 (110)
Q Consensus 2 ~lgfEG~~~~V~~~~~~~~~I~~~~GGv~~G~~~G~~W~~~rF~~PYLRD~l~~~G~~~DT~ETAv~Ws~v~~l~~~V~~ 81 (110)
++.|+|++++|+.+.+++.++|+++||...+++..+.|+..|+..||+|+.++++|.+.+++||+|||++++++++.+++
T Consensus 396 lve~~g~~~~v~~~~~~~~~~~~~~g~~~~~~~~~~lW~~r~~~~~~l~~~~~~~g~~~~~~Dv~VP~~~l~~~~~~~~~ 475 (584)
T 2uuu_A 396 IIGFEGPKKVVDFHRTSVFDILSKNAAFGLGSAPGKTWAEKRYDLPYIRDFLLDHNMWVDVAETTVSYANLQTLWKDAKQ 475 (584)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHHTTTCEEEEEESTTHHHHGGGGHHHHHHHHHTTTEEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEecChHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHhhhchHHHHhhhcccCCccccceEEeeHHHHHHHHHHHHH
Confidence 57899999999999999999999999988888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCC
Q psy3321 82 RLTRECTVSLVGR 94 (110)
Q Consensus 82 a~~~a~~~~g~~~ 94 (110)
.+.+.+.++|.+.
T Consensus 476 ~l~~~~~~~g~~~ 488 (584)
T 2uuu_A 476 TFVKHFKDQGIPA 488 (584)
T ss_dssp HHHHHHHTTTCCE
T ss_pred HHHhHHHhcCCee
Confidence 9999999988774
No 2
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=99.23 E-value=1e-11 Score=106.04 Aligned_cols=93 Identities=55% Similarity=1.023 Sum_probs=88.9
Q ss_pred EEEEecChHHHHhHHHHHHHHHHHcCCcccCCcccccccccccchhhchHHHHhccCceeeeeccccccCcHHHHHHHHH
Q psy3321 2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKK 81 (110)
Q Consensus 2 ~lgfEG~~~~V~~~~~~~~~I~~~~GGv~~G~~~G~~W~~~rF~~PYLRD~l~~~G~~~DT~ETAv~Ws~v~~l~~~V~~ 81 (110)
++.|||+.+.+..+.+++.++++++||+..++..++.|+..||..||+|+..++++...+++||++||++++++++++++
T Consensus 467 ~~~~eg~~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~avP~~~l~~~~~~v~~ 546 (658)
T 4bby_A 467 TLLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFETSAPWDRVVDLCRNVKE 546 (658)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHHTTTCEECCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEGGGHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHhhHHHHHHhhccccCCccceEEEEeeHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCC
Q psy3321 82 RLTRECTVSLVGR 94 (110)
Q Consensus 82 a~~~a~~~~g~~~ 94 (110)
++.+.+.+.++..
T Consensus 547 ~l~~~~~~~g~~~ 559 (658)
T 4bby_A 547 RIRRECKEKGVQF 559 (658)
T ss_dssp HHHHHHHHTTCSS
T ss_pred HHHHHHHhcCccc
Confidence 9999999987754
No 3
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*
Probab=97.28 E-value=0.00027 Score=59.12 Aligned_cols=87 Identities=10% Similarity=-0.050 Sum_probs=62.1
Q ss_pred EEEEecChHHHHhHHHHHHHHHHHcCCccc--CCcc--cccccccccch----hhchHH---HHhccCceeeeeccccc-
Q psy3321 2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPA--GESN--GRRGYMLTYII----AYIRDF---ACDYYFIGDSFETSVPW- 69 (110)
Q Consensus 2 ~lgfEG~~~~V~~~~~~~~~I~~~~GGv~~--G~~~--G~~W~~~rF~~----PYLRD~---l~~~G~~~DT~ETAv~W- 69 (110)
++.|+|+++.|+.+.+++.++|+++||... .+.+ .+.|.. |+.. |+++.. .|..|=...++++++||
T Consensus 354 ~~e~~g~~~~v~~~~~~i~~i~~~~~~~~~~~~~~~~e~~~~w~-R~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~vP~~ 432 (560)
T 1e8g_A 354 YGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRV-RDKTMQGIPTYDELKWIDWLPNGAHLFFSPIAKVS 432 (560)
T ss_dssp EEEEESCHHHHHHHHHHHHHHHTTSTTCEEECGGGSCTTCHHHH-HHHHTTTCCCCGGGGGGGGSTTEEEEEECBEECSS
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHhCCCceeeccccchhhhhHHH-HHhhcccCchhhhhccccccCCCceEEEeeecCCC
Confidence 466999999999999999999999998533 3222 344554 7665 887754 23332234668999999
Q ss_pred -cCcHHHHHHHHHHHHHHHHhcCCC
Q psy3321 70 -DKTVLLCINVKKRLTRECTVSLVG 93 (110)
Q Consensus 70 -s~v~~l~~~V~~a~~~a~~~~g~~ 93 (110)
++++++++.+++. ++++|.+
T Consensus 433 ~~~l~~~~~~~~~~----~~~~g~~ 453 (560)
T 1e8g_A 433 GEDAMMQYAVTKKR----CQEAGLD 453 (560)
T ss_dssp HHHHHHHHHHHHHH----HHHHTCC
T ss_pred HHHHHHHHHHHHHH----HHHcCCc
Confidence 9999999998653 4555655
No 4
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1
Probab=97.22 E-value=3.9e-05 Score=65.06 Aligned_cols=81 Identities=11% Similarity=0.105 Sum_probs=59.3
Q ss_pred EEEEecChHHHHhHHHHHHHHHHHcCCccc--CCcccccccccccchh----hchHHHHh-ccCceeeeeccccccCcHH
Q psy3321 2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPA--GESNGRRGYMLTYIIA----YIRDFACD-YYFIGDSFETSVPWDKTVL 74 (110)
Q Consensus 2 ~lgfEG~~~~V~~~~~~~~~I~~~~GGv~~--G~~~G~~W~~~rF~~P----YLRD~l~~-~G~~~DT~ETAv~Ws~v~~ 74 (110)
++-|+|+..+ ...+++.+++++++|... .++.+++|...||..+ ++|+...+ .| .+.++|||+||++++.
T Consensus 393 lve~~g~~~~--~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~R~~~~~~~~~~r~~~~~~~g-~~~~~Dvavp~~~l~~ 469 (571)
T 1f0x_A 393 LLKMAGDGVG--EAKSWLVDYFKQAEGDFFVCTPEEGSKAFLHRFAAAGAAIRYQAVHSDEVE-DILALDIALRRNDTEW 469 (571)
T ss_dssp EEEECTTHHH--HHHHHHHHHHHHSSCEEEECCHHHHHHHHHHHTTHHHHHHHHHHHTTTTEE-EEEEEEEECCTTCSCC
T ss_pred EEEEecCcHH--HHHHHHHHHHHHcCCCeeecCccHHHHHHHHhhhhhhHHHHhhhcchhhcC-CceEEEEEecHHHhHH
Confidence 4566666543 235666778888866433 4566777888899997 88987775 33 3689999999999999
Q ss_pred HHHHHHHHHHHH
Q psy3321 75 LCINVKKRLTRE 86 (110)
Q Consensus 75 l~~~V~~a~~~a 86 (110)
+ +.+++.+.+.
T Consensus 470 ~-~~~~~~l~~~ 480 (571)
T 1f0x_A 470 Y-EHLPPEIDSQ 480 (571)
T ss_dssp S-CCCCHHHHTT
T ss_pred H-HHHHHHHHhh
Confidence 9 8887766543
No 5
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=96.63 E-value=0.0019 Score=53.22 Aligned_cols=81 Identities=10% Similarity=-0.051 Sum_probs=56.5
Q ss_pred CEEEEecChHHHHhHHHHHHHHHHHcCCccc---CC---cccccccccccchhhchHHHHhccCceeeeeccccccCcHH
Q psy3321 1 MALLVLGDPEDVKNNEDKIYSIAKRYGGIPA---GE---SNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVL 74 (110)
Q Consensus 1 ~~lgfEG~~~~V~~~~~~~~~I~~~~GGv~~---G~---~~G~~W~~~rF~~PYLRD~l~~~G~~~DT~ETAv~Ws~v~~ 74 (110)
+++-|+|+.++++.+.+++.+++.++|++.- -. +..+-|. .|-..+ ..+...|. ..+.+++||||++++
T Consensus 291 llve~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~a~~~~~~~~lW~-~R~~~~---~~~~~~g~-~~~~Dv~vP~~~l~~ 365 (476)
T 3pm9_A 291 VLIELSSPRDDARAALESILERGFEDGIVVDAAIANSVQQQQAFWK-LREEIS---PAQKPEGG-SIKHDISVPVAAVPQ 365 (476)
T ss_dssp EEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEECCSHHHHHHHHH-HHHTHH---HHTGGGCC-EECCEEECCGGGHHH
T ss_pred EEEEEccCcHHHHHHHHHHHHHHHhcCCCcceEEeCCHHHHHHHHH-HHHHHH---HHHhhcCC-ceeEEEEeeHHHHHH
Confidence 3577899888888899999999999987421 11 1223453 333332 12223454 688999999999999
Q ss_pred HHHHHHHHHHHH
Q psy3321 75 LCINVKKRLTRE 86 (110)
Q Consensus 75 l~~~V~~a~~~a 86 (110)
+++.+++.+.+.
T Consensus 366 ~~~~~~~~~~~~ 377 (476)
T 3pm9_A 366 FIEQANAAVVAL 377 (476)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999998777665
No 6
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A*
Probab=95.15 E-value=0.0019 Score=53.70 Aligned_cols=67 Identities=6% Similarity=-0.132 Sum_probs=50.6
Q ss_pred ec-ChHHHHhHHHHHHHHHHHcCCcccCCc----------ccccccccccchhhchHHHHhccCceeeeeccccccCcHH
Q psy3321 6 LG-DPEDVKNNEDKIYSIAKRYGGIPAGES----------NGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVL 74 (110)
Q Consensus 6 EG-~~~~V~~~~~~~~~I~~~~GGv~~G~~----------~G~~W~~~rF~~PYLRD~l~~~G~~~DT~ETAv~Ws~v~~ 74 (110)
+| +.++|+.+.+++.++++.+||....+. ....|...++..|.+.. . +++++||||++++
T Consensus 324 ~g~~~~~v~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~W~~R~~~~~a~~~-----~----~~Dv~VP~s~l~~ 394 (524)
T 2exr_A 324 DSDSNSTIDKRVERLIGRLRFNEGLRFEVDLPYVDFLLRVKRSEEIAKENGTWETPH-----P----WLNLFVSKRDIGD 394 (524)
T ss_dssp TTSCHHHHHHHHHHHHTTCCCCTTCEEEEEEEHHHHHTTTHHHHHHHHHTTCSSSCC-----C----CEEEEEEHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCeEeecccchhhhhhhhhhHHHHhhhhcccccCC-----C----eeEEEECHHHHHH
Confidence 78 678899999999999999999755432 22237766666655542 1 3699999999999
Q ss_pred HHHHHHH
Q psy3321 75 LCINVKK 81 (110)
Q Consensus 75 l~~~V~~ 81 (110)
+++.|++
T Consensus 395 ~~~~v~~ 401 (524)
T 2exr_A 395 FNRTVFK 401 (524)
T ss_dssp HHHHCCC
T ss_pred HHHHHHH
Confidence 9988865
No 7
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=93.35 E-value=0.12 Score=42.47 Aligned_cols=84 Identities=10% Similarity=-0.155 Sum_probs=50.2
Q ss_pred EEEEecChHHHHhHHHHHHHHHHHcCCcccCCcccccccccccchhhchHHHHh----------------ccCceeeeec
Q psy3321 2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACD----------------YYFIGDSFET 65 (110)
Q Consensus 2 ~lgfEG~~~~V~~~~~~~~~I~~~~GGv~~G~~~G~~W~~~rF~~PYLRD~l~~----------------~G~~~DT~ET 65 (110)
++.|+|++++++.+.+.+.++++++|+..+.. ..+. .+-...++|+.++. -+.+.++.-.
T Consensus 323 ~~~~~g~~~~v~~~~~~i~~~~~~~~~~~~~~---~~~~-~~~~~w~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v 398 (520)
T 1wvf_A 323 YAALYGTQEQVDVNWKIVTDVFKKLGKGRIVT---QEEA-GDTQPFKYRAQLMSGVPNLQEFGLYNWRGGGGSMWFAPVS 398 (520)
T ss_dssp EEEEEESHHHHHHHHHHHHHHHHHHTCCEEEE---HHHH-TTCTTHHHHHHHHTTCCCCGGGGGGGSSCTEEEEEECBEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHHcCCeEEEe---cccc-hhhhHHHHHHHhhccCchhhhhccccccCCCceEEecccc
Confidence 35599999999999999999999999854421 1222 12334455544431 1122223333
Q ss_pred cccccCcHHHHHHHHHHHHHHHHhcCCC
Q psy3321 66 SVPWDKTVLLCINVKKRLTRECTVSLVG 93 (110)
Q Consensus 66 Av~Ws~v~~l~~~V~~a~~~a~~~~g~~ 93 (110)
.++|++++++++.+++ .++++|.+
T Consensus 399 p~~~~~l~~~~~~~~~----~~~~~~~~ 422 (520)
T 1wvf_A 399 EARGSECKKQAAMAKR----VLHKYGLD 422 (520)
T ss_dssp ESCHHHHHHHHHHHHH----HHHHTTCC
T ss_pred CCCHHHHHHHHHHHHH----HHHHcCCC
Confidence 4455788888777644 44566654
No 8
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1
Probab=60.44 E-value=7.1 Score=30.22 Aligned_cols=34 Identities=18% Similarity=0.045 Sum_probs=29.9
Q ss_pred EEEEec-ChHHHHhHHHHHHHHHHHcCCcccCCcc
Q psy3321 2 ALLVLG-DPEDVKNNEDKIYSIAKRYGGIPAGESN 35 (110)
Q Consensus 2 ~lgfEG-~~~~V~~~~~~~~~I~~~~GGv~~G~~~ 35 (110)
++-++| +.+++..+.+.+.+++++++|+.++.++
T Consensus 275 lvn~~ga~~~~v~~~~~~v~~~v~~~~gi~le~Ev 309 (326)
T 1hsk_A 275 MVNVDNGTATDYENLIHYVQKTVKEKFGIELNREV 309 (326)
T ss_dssp EEECSSCCHHHHHHHHHHHHHHHHHHHSCCCCBCS
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHhhCCeeEEEE
Confidence 567788 6688999999999999999999998876
No 9
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=54.24 E-value=6.7 Score=25.32 Aligned_cols=26 Identities=12% Similarity=0.455 Sum_probs=20.6
Q ss_pred CEEEEecChHHHHhHHHHHHHHHHHcCCc
Q psy3321 1 MALLVLGDPEDVKNNEDKIYSIAKRYGGI 29 (110)
Q Consensus 1 ~~lgfEG~~~~V~~~~~~~~~I~~~~GGv 29 (110)
+++.|+|.-+. .+..+.+++.++||.
T Consensus 11 ~~~v~TG~l~~---~R~e~~~~i~~~Gg~ 36 (92)
T 1l7b_A 11 LTFVITGELSR---PREEVKALLRRLGAK 36 (92)
T ss_dssp CEEECSTTTTS---CHHHHHHHHHHTTCE
T ss_pred cEEEEecCCCC---CHHHHHHHHHHcCCE
Confidence 46888997544 678888999999994
No 10
>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1
Probab=52.52 E-value=5.9 Score=27.46 Aligned_cols=28 Identities=14% Similarity=0.081 Sum_probs=24.6
Q ss_pred ccccccchhhchHHHHhccCceeeeecc
Q psy3321 39 GYMLTYIIAYIRDFACDYYFIGDSFETS 66 (110)
Q Consensus 39 W~~~rF~~PYLRD~l~~~G~~~DT~ETA 66 (110)
+...+|-.|-+|+.|.++|+-+|.+-|.
T Consensus 76 G~~~~~l~p~l~~~l~~~GI~vE~M~T~ 103 (135)
T 2fvt_A 76 GADVWIAPRQLREALRGVNVVLDTMQTG 103 (135)
T ss_dssp TTSCCCCCHHHHHHHHTTTCEEEEECHH
T ss_pred CCCCCcCCHHHHHHHHHcCCEEEEeCHH
Confidence 4456788899999999999999999996
No 11
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=49.04 E-value=7.1 Score=26.51 Aligned_cols=29 Identities=10% Similarity=0.022 Sum_probs=25.2
Q ss_pred ccccccc-chhhchHHHHhccCceeeeecc
Q psy3321 38 RGYMLTY-IIAYIRDFACDYYFIGDSFETS 66 (110)
Q Consensus 38 ~W~~~rF-~~PYLRD~l~~~G~~~DT~ETA 66 (110)
.+...+| -.|-+|+.|.++|+-+|.+-|.
T Consensus 69 tG~~~~~~~~~~~~~~l~~~gI~ve~m~T~ 98 (122)
T 2ab1_A 69 RGMSEALKVPSSTVEYLKKHGIDVRVLQTE 98 (122)
T ss_dssp ECSSCCSCCCHHHHHHHHHTTCEEEEECHH
T ss_pred CCCCCccCCCHHHHHHHHHcCCEEEEeCHH
Confidence 4557788 7889999999999999999885
No 12
>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV}
Probab=48.14 E-value=7.4 Score=26.78 Aligned_cols=29 Identities=3% Similarity=-0.119 Sum_probs=24.9
Q ss_pred cccccccchhhchHHHHhccCceeeeecc
Q psy3321 38 RGYMLTYIIAYIRDFACDYYFIGDSFETS 66 (110)
Q Consensus 38 ~W~~~rF~~PYLRD~l~~~G~~~DT~ETA 66 (110)
.+...+|-.|-+|+.|.++|+-+|.+-|.
T Consensus 72 TG~~~~~l~p~~~~~l~~~GI~vE~m~T~ 100 (132)
T 2gm2_A 72 TGERQQFPSTDVLAACLTRGIGLEAMTNA 100 (132)
T ss_dssp CTTSCCCCCHHHHHHHHHHTCEEEEECHH
T ss_pred CCCCCCcCCHHHHHHHHHcCCEEEEeCHH
Confidence 34456788999999999999999999994
No 13
>2fi9_A Outer membrane protein; bartonella hense protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1
Probab=45.96 E-value=8.8 Score=26.11 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=23.6
Q ss_pred ccccchhhchHHHHhccCceeeeecc
Q psy3321 41 MLTYIIAYIRDFACDYYFIGDSFETS 66 (110)
Q Consensus 41 ~~rF~~PYLRD~l~~~G~~~DT~ETA 66 (110)
..+|-.|-+|+.|.++|+-+|.+-|.
T Consensus 79 ~~~~l~p~~~~~l~~~GI~vE~m~T~ 104 (128)
T 2fi9_A 79 ELLRLPEELRVLLWEKRISSDTMSTG 104 (128)
T ss_dssp SCCCCCHHHHHHHHHTTCEEEEECHH
T ss_pred CCCCCCHHHHHHHHHcCCEEEEeCHH
Confidence 36788999999999999999999984
No 14
>4f54_A Uncharacterized protein; PF13590 family protein, DUF4136, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.60A {Bacteroides thetaiotaomicron}
Probab=43.18 E-value=13 Score=27.28 Aligned_cols=36 Identities=8% Similarity=-0.042 Sum_probs=28.8
Q ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCC-cccccccccc
Q psy3321 68 PWDKTVLLCINVKKRLTRECTVSLVGRI-KSARADFILP 105 (110)
Q Consensus 68 ~Ws~v~~l~~~V~~a~~~a~~~~g~~~~-~~~~~~~~~~ 105 (110)
-|+.+ .-++|+++|.+.|.++|.... .+..+||++-
T Consensus 52 ~~~dl--~~kRI~~aV~~~L~akG~~~v~~~~~pDllV~ 88 (197)
T 4f54_A 52 YLEGE--GAEQILAAYTENMEAXGYQPAADXESADLGIQ 88 (197)
T ss_dssp ECCSH--HHHHHHHHHHHHHHHTTCEECSSTTTCSEEEE
T ss_pred ccCcH--HHHHHHHHHHHHHHhcCceecCCCCCCCEEEE
Confidence 35654 577899999999999998887 5679998764
No 15
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=38.48 E-value=29 Score=22.01 Aligned_cols=28 Identities=14% Similarity=0.154 Sum_probs=21.5
Q ss_pred CEEEEecChHHHHhHHHHHHHHHHHcCCccc
Q psy3321 1 MALLVLGDPEDVKNNEDKIYSIAKRYGGIPA 31 (110)
Q Consensus 1 ~~lgfEG~~~~V~~~~~~~~~I~~~~GGv~~ 31 (110)
+++.|.|... ..+..+.++++++||.+.
T Consensus 19 ~~i~isg~~~---~~r~~l~~li~~~Gg~v~ 46 (107)
T 3l3e_A 19 VVVCVSKKLS---KKQSELNGIAASLGADYR 46 (107)
T ss_dssp CEEEECGGGG---GGHHHHHHHHHHTTCEEE
T ss_pred eEEEEeCCCh---HhHHHHHHHHHHcCCEEe
Confidence 4677888654 567888899999999654
No 16
>3cpk_A Uncharacterized protein Q7W7N7_borpa; BPP2477, BER31, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Bordetella parapertussis 12822} PDB: 2k2e_A
Probab=35.97 E-value=15 Score=26.13 Aligned_cols=30 Identities=7% Similarity=-0.165 Sum_probs=25.5
Q ss_pred cccccccchhhchHHHHhccCceeeeeccc
Q psy3321 38 RGYMLTYIIAYIRDFACDYYFIGDSFETSV 67 (110)
Q Consensus 38 ~W~~~rF~~PYLRD~l~~~G~~~DT~ETAv 67 (110)
.+...+|-.|-++..|.++|+.+|.+-|..
T Consensus 96 TG~~~~~l~p~~~~~L~~~GIgvE~M~T~a 125 (150)
T 3cpk_A 96 TGRRQHLLGPEQVRPLLAMGVGVEAMDTQA 125 (150)
T ss_dssp CTTSCCCCCHHHHHHHHTTTCEEEEECHHH
T ss_pred CCCCCCCCCHHHHHHHHHcCCEEEEeCHHH
Confidence 345667889999999999999999999853
No 17
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=35.69 E-value=35 Score=20.83 Aligned_cols=27 Identities=19% Similarity=0.460 Sum_probs=22.7
Q ss_pred EEEEecChHHHHhHHHHHHHHHHHcCC
Q psy3321 2 ALLVLGDPEDVKNNEDKIYSIAKRYGG 28 (110)
Q Consensus 2 ~lgfEG~~~~V~~~~~~~~~I~~~~GG 28 (110)
++-..|+.+.|+..++.+.+++++.+|
T Consensus 53 ~v~I~G~~~~v~~A~~~I~~~i~~~~g 79 (82)
T 1zzk_A 53 IITITGTQDQIQNAQYLLQNSVKQYSG 79 (82)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHHHHHS
T ss_pred EEEEEeCHHHHHHHHHHHHHHHHhccC
Confidence 355678999999999999999988776
No 18
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=32.30 E-value=1.7e+02 Score=23.29 Aligned_cols=77 Identities=12% Similarity=-0.041 Sum_probs=47.9
Q ss_pred EEecCh-HHHHhHHHHHHHHHHHcCCccc---------CCc----cc--------ccccccccchhhchHHHHhccCcee
Q psy3321 4 LVLGDP-EDVKNNEDKIYSIAKRYGGIPA---------GES----NG--------RRGYMLTYIIAYIRDFACDYYFIGD 61 (110)
Q Consensus 4 gfEG~~-~~V~~~~~~~~~I~~~~GGv~~---------G~~----~G--------~~W~~~rF~~PYLRD~l~~~G~~~D 61 (110)
-.+|.+ ..|....+.+.+.+++.+|-.+ |-. +. +.|.. +=-+..+|+.|.+.|++-+
T Consensus 272 ~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~Ghs~~Dd~~~Yr~~~e~~~~~~-~DPi~~~~~~L~~~g~~~~ 350 (407)
T 1qs0_A 272 RVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTSDDPSKYRPADDWSHFPL-GDPIARLKQHLIKIGHWSE 350 (407)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCCSCSSTTCCGGGTSCTTHHHHCTT-CCHHHHHHHHHHHTTSCCH
T ss_pred EEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccCCcCCCCCccccCCHHHHHHHhc-CCHHHHHHHHHHHCCCCCH
Confidence 346654 5677788888888887777211 111 11 14554 3223388999999999877
Q ss_pred eeeccccccCcHHHHHHHHHHHHHHHHh
Q psy3321 62 SFETSVPWDKTVLLCINVKKRLTRECTV 89 (110)
Q Consensus 62 T~ETAv~Ws~v~~l~~~V~~a~~~a~~~ 89 (110)
+.+.++.+.+++.+.++++.
T Consensus 351 --------~~~~~i~~~~~~~v~~a~~~ 370 (407)
T 1qs0_A 351 --------EEHQATTAEFEAAVIAAQKE 370 (407)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666544
No 19
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=32.01 E-value=47 Score=21.98 Aligned_cols=29 Identities=17% Similarity=0.225 Sum_probs=21.8
Q ss_pred CEEEEecChHHHHhHHHHHHHHHHHcCCcccC
Q psy3321 1 MALLVLGDPEDVKNNEDKIYSIAKRYGGIPAG 32 (110)
Q Consensus 1 ~~lgfEG~~~~V~~~~~~~~~I~~~~GGv~~G 32 (110)
++|.|.|-.. .+++.+.+++..+||.+.+
T Consensus 25 ~~Ic~sGf~~---~er~~l~~~i~~~GG~~~~ 53 (112)
T 3l46_A 25 CILSFLGFSD---EEKTNMEEMTEMQGGKYLP 53 (112)
T ss_dssp CEECEESCCH---HHHHHHHHHHHHTTCEECC
T ss_pred eEEEEeCCCH---HHHHHHHHHHHHcCCEECc
Confidence 3567777554 3578888899999997775
No 20
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=31.12 E-value=1e+02 Score=24.27 Aligned_cols=77 Identities=13% Similarity=0.076 Sum_probs=48.6
Q ss_pred EecC-hHHHHhHHHHHHHHHHHcCCccc---------CC---ccc---------ccccccccchhhchHHHHhccCceee
Q psy3321 5 VLGD-PEDVKNNEDKIYSIAKRYGGIPA---------GE---SNG---------RRGYMLTYIIAYIRDFACDYYFIGDS 62 (110)
Q Consensus 5 fEG~-~~~V~~~~~~~~~I~~~~GGv~~---------G~---~~G---------~~W~~~rF~~PYLRD~l~~~G~~~DT 62 (110)
.+|. ...|....+.+.+.+++.+|-.+ |- .+. +.|++.+=-+..+|+.|.+.|++-+
T Consensus 229 VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~R~~gHs~~D~~~~Yr~~~e~~~~~~~~dpi~~~~~~L~~~g~~~~- 307 (365)
T 2ozl_A 229 VDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASV- 307 (365)
T ss_dssp EETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCSSCSSTTCCSCSSSCHHHHHHHHHHHCHHHHHHHHHHHTTSSCH-
T ss_pred EeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCCCCCCCCCCcccCCHHHHHHHHhCCCHHHHHHHHHHhcCCCCH-
Confidence 4674 46688888888888888777322 11 111 2344433334478899999999876
Q ss_pred eeccccccCcHHHHHHHHHHHHHHHHh
Q psy3321 63 FETSVPWDKTVLLCINVKKRLTRECTV 89 (110)
Q Consensus 63 ~ETAv~Ws~v~~l~~~V~~a~~~a~~~ 89 (110)
+.+.++.+.+++.+.++++.
T Consensus 308 -------~~~~~i~~~~~~~v~~a~~~ 327 (365)
T 2ozl_A 308 -------EELKEIDVEVRKEIEDAAQF 327 (365)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777766543
No 21
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae}
Probab=30.39 E-value=28 Score=23.62 Aligned_cols=34 Identities=12% Similarity=0.172 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHcCCcccCCcccccccccccchhh
Q psy3321 15 NEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAY 48 (110)
Q Consensus 15 ~~~~~~~I~~~~GGv~~G~~~G~~W~~~rF~~PY 48 (110)
-..+..++.+++||.++-+.|-+.-.+-.+..||
T Consensus 31 d~d~L~~lI~~nGG~Vl~~lP~~s~~~~yVVSpy 64 (106)
T 2l42_A 31 DIDQLARLIRANGGEVLDSKPRESKENVFIVSPY 64 (106)
T ss_dssp THHHHHHHHHTTTSCCCEECCCCCSSCCCCBCTT
T ss_pred HHHHHHHHHHhcCcEEhhhCcccccCCeEEEeCC
Confidence 3556677889999998877775554555555554
No 22
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=29.96 E-value=2e+02 Score=22.47 Aligned_cols=77 Identities=12% Similarity=-0.019 Sum_probs=49.3
Q ss_pred EEecC-hHHHHhHHHHHHHHHHHcCCccc---------CCc-----c--------cccccccccchhhchHHHHhccCce
Q psy3321 4 LVLGD-PEDVKNNEDKIYSIAKRYGGIPA---------GES-----N--------GRRGYMLTYIIAYIRDFACDYYFIG 60 (110)
Q Consensus 4 gfEG~-~~~V~~~~~~~~~I~~~~GGv~~---------G~~-----~--------G~~W~~~rF~~PYLRD~l~~~G~~~ 60 (110)
-.+|. ...|....+++.+.+++.+|-.+ |-. + -+.|.. +=-++.+|+.|.+.|++-
T Consensus 232 ~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~r~~gHs~~~Ddp~~yr~~~e~~~~~~-~dPi~~~~~~L~~~g~~~ 310 (368)
T 1w85_A 232 QVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGPHTMSGDDPTRYRSKELENEWAK-KDPLVRFRKFLEAKGLWS 310 (368)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCSSCSCSSCC------CHHHHHHHHT-TCHHHHHHHHHHHTTCCC
T ss_pred EEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccCCCCCCCCCccccCCHHHHHHHhc-CCHHHHHHHHHHHcCCCC
Confidence 34674 46788888888888877777111 111 1 135554 323337899999999987
Q ss_pred eeeeccccccCcHHHHHHHHHHHHHHHHh
Q psy3321 61 DSFETSVPWDKTVLLCINVKKRLTRECTV 89 (110)
Q Consensus 61 DT~ETAv~Ws~v~~l~~~V~~a~~~a~~~ 89 (110)
+ +.+.++.+.+++.+.++.+.
T Consensus 311 ~--------~~~~~i~~~~~~~v~~a~~~ 331 (368)
T 1w85_A 311 E--------EEENNVIEQAKEEIKEAIKK 331 (368)
T ss_dssp H--------HHHHHHHHHHHHHHHHHHHH
T ss_pred H--------HHHHHHHHHHHHHHHHHHHH
Confidence 7 44567777777777776554
No 23
>3r8j_A Heme-binding protein 2; HEBP family, SOUL protein, apoptosis; 1.60A {Homo sapiens} PDB: 3r8k_A 2yc9_A 4ayz_A 4ayz_B 3r85_E
Probab=26.76 E-value=68 Score=23.50 Aligned_cols=43 Identities=14% Similarity=0.036 Sum_probs=31.1
Q ss_pred EEEEecC--hHHHHhHHHHHHHHHHHcCCcccCCcccccccccccchhh
Q psy3321 2 ALLVLGD--PEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAY 48 (110)
Q Consensus 2 ~lgfEG~--~~~V~~~~~~~~~I~~~~GGv~~G~~~G~~W~~~rF~~PY 48 (110)
++.|.|. ++.+..+.++..+.++++|-.+. +.-++-.+|+.|+
T Consensus 142 v~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~----~~~y~~A~Yd~P~ 186 (212)
T 3r8j_A 142 VRSFDGFSSAQKNQEQLLTLASILREDGKVFD----EKVYYTAGYNSPV 186 (212)
T ss_dssp EEEESSCCCHHHHHHHHHHHHHHHHHTTCCBC----SSCEEEEESSSSS
T ss_pred EEEeCCcCCHHHHHHHHHHHHHHHHhCCCccC----CCcEEEEEeCCCC
Confidence 5678885 45688889999999999986554 3345566677664
No 24
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=26.70 E-value=68 Score=24.48 Aligned_cols=70 Identities=10% Similarity=0.094 Sum_probs=42.8
Q ss_pred HHHHhHHHHHHHHHHHcCCcccCC---cccccccccccchhhchHHH---HhccC----ceeeeeccccccCcHHHHHHH
Q psy3321 10 EDVKNNEDKIYSIAKRYGGIPAGE---SNGRRGYMLTYIIAYIRDFA---CDYYF----IGDSFETSVPWDKTVLLCINV 79 (110)
Q Consensus 10 ~~V~~~~~~~~~I~~~~GGv~~G~---~~G~~W~~~rF~~PYLRD~l---~~~G~----~~DT~ETAv~Ws~v~~l~~~V 79 (110)
+++-...+.+.+.++++|-..-+. ..| .-+.+|.+..|+-+.+ .++|. ++||...++| ..+.++.+.+
T Consensus 118 ~e~l~~~~~~v~~ak~~G~~v~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P-~~v~~lv~~l 195 (307)
T 1ydo_A 118 SESLHILKQVNNDAQKANLTTRAYLSTVFG-CPYEKDVPIEQVIRLSEALFEFGISELSLGDTIGAANP-AQVETVLEAL 195 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEECTTC-BTTTBCCCHHHHHHHHHHHHHHTCSCEEEECSSCCCCH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEEEEec-CCcCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCcCH-HHHHHHHHHH
Confidence 344455667778888988743211 010 1134566666777665 56665 7899999988 4566666666
Q ss_pred HH
Q psy3321 80 KK 81 (110)
Q Consensus 80 ~~ 81 (110)
++
T Consensus 196 ~~ 197 (307)
T 1ydo_A 196 LA 197 (307)
T ss_dssp HT
T ss_pred HH
Confidence 44
No 25
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=25.95 E-value=65 Score=20.95 Aligned_cols=36 Identities=11% Similarity=0.070 Sum_probs=27.4
Q ss_pred ChHHHHhHHHHHHHHHHHcCCcccCCcccccccccccch
Q psy3321 8 DPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYII 46 (110)
Q Consensus 8 ~~~~V~~~~~~~~~I~~~~GGv~~G~~~G~~W~~~rF~~ 46 (110)
++++++...++...++.++||...-. +.|=..|+.-
T Consensus 57 ~ee~~~~~ve~~~~iI~~~gG~i~~v---e~WG~R~LAY 92 (96)
T 2kjw_A 57 DQSQLALEKEIIQRALENYGARVEKV---EELGLRRLAY 92 (96)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCCSCC---EECCCCCCCC
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEE---eccccccccc
Confidence 46789999999999999999976633 4576666543
No 26
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.54 E-value=44 Score=22.03 Aligned_cols=29 Identities=10% Similarity=0.067 Sum_probs=21.6
Q ss_pred CEEEEecChHHHHhHHHHHHHHHHHcCCcccC
Q psy3321 1 MALLVLGDPEDVKNNEDKIYSIAKRYGGIPAG 32 (110)
Q Consensus 1 ~~lgfEG~~~~V~~~~~~~~~I~~~~GGv~~G 32 (110)
+++.|.|.. ...+..+.+++..+||.+..
T Consensus 26 ~~i~itG~~---~~~r~~l~~~i~~~Gg~v~~ 54 (129)
T 2d8m_A 26 VVVVLSGFQ---NPFRSELRDKALELGAKYRP 54 (129)
T ss_dssp EEEEEESCC---TTHHHHHHHHHHHTTEEEES
T ss_pred eEEEEeCCC---cHHHHHHHHHHHHcCCEEeC
Confidence 367788865 34677888999999996553
No 27
>3av9_A Integrase, IN; protein-protein interactions, HIV, recombination-inhibitor C; 1.70A {Human immunodeficiency virus type 1} PDB: 3ava_A 3avb_A 3avc_A 3avg_A 3avh_A 3avi_A 3avj_A 3avk_A 3avl_A 3avm_A 3avn_A 3nf6_A* 3nf7_A* 3nf8_A* 3nf9_A* 3nfa_A* 3avf_A
Probab=24.93 E-value=1.1e+02 Score=20.48 Aligned_cols=66 Identities=11% Similarity=0.032 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHcCCcccCCcccccccccccchhhchHHHHhccCceeeeeccccccC--cHHHHHHHHHHHHH
Q psy3321 15 NEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDK--TVLLCINVKKRLTR 85 (110)
Q Consensus 15 ~~~~~~~I~~~~GGv~~G~~~G~~W~~~rF~~PYLRD~l~~~G~~~DT~ETAv~Ws~--v~~l~~~V~~a~~~ 85 (110)
....+.+++.++|-..+-..+|.. |....+++++.++|+-...--.-.+|+| ++.....+++.+..
T Consensus 68 ~~~~~~~~~~~~~~~~i~sDnG~e-----f~s~~~~~~~~~~gI~~~~s~p~~P~~nG~vEr~~~tlk~~l~~ 135 (183)
T 3av9_A 68 TAYFLLKLAGRWPVKTVHTDNGSN-----FTSTTVKAACWWAGIKQEDGIPYNPQSQGVIESMNKELKKIIGQ 135 (183)
T ss_dssp HHHHHHHHHHHSCCCEEECSSHHH-----HHCHHHHHHHHHHTCEEECCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcEEEecCchh-----cchHHHHHHHHHCCCEEeecCCCCCcchhHHHHHHHHHHHHHHH
Confidence 334455677777643444455543 4445568889999988776666777876 56666666655543
No 28
>2aee_A OPRT, oprtase, orotate phosphoribosyltransferase; structural genomics, PSI, structure initiative; 1.95A {Streptococcus pyogenes} SCOP: c.61.1.1
Probab=24.88 E-value=1.4e+02 Score=20.99 Aligned_cols=35 Identities=6% Similarity=-0.187 Sum_probs=25.9
Q ss_pred HHHHHHHHHHcCCcccCCcccccccccccchhhchH
Q psy3321 16 EDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRD 51 (110)
Q Consensus 16 ~~~~~~I~~~~GGv~~G~~~G~~W~~~rF~~PYLRD 51 (110)
.+.+.+++.+.|.+..+......|..++| .||..|
T Consensus 6 ~~~~a~~l~~~gai~~~~h~~f~l~sG~~-S~~~~D 40 (211)
T 2aee_A 6 ASQIATQLLDIKAVYLKPEDPFTWASGIK-SPIYTD 40 (211)
T ss_dssp HHHHHHHHHHTTSEEECTTSCEECGGGCE-ESEEEC
T ss_pred HHHHHHHHHHCCCEEECCCCCeEeCCCCc-CCeEEe
Confidence 45678899999998887655577888888 355444
No 29
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=24.56 E-value=1.2e+02 Score=22.72 Aligned_cols=70 Identities=14% Similarity=0.031 Sum_probs=41.2
Q ss_pred HhHHHHHHHHHHHcCCcccCCc--ccccccccccchhhchHHH---HhccC----ceeeeeccccccCcHHHHHHHHHHH
Q psy3321 13 KNNEDKIYSIAKRYGGIPAGES--NGRRGYMLTYIIAYIRDFA---CDYYF----IGDSFETSVPWDKTVLLCINVKKRL 83 (110)
Q Consensus 13 ~~~~~~~~~I~~~~GGv~~G~~--~G~~W~~~rF~~PYLRD~l---~~~G~----~~DT~ETAv~Ws~v~~l~~~V~~a~ 83 (110)
-....++.+.++++|-..-+.- .-..-+.+|.+..|+-+.+ .++|. ++||...+.| ..+.++.+.+++.+
T Consensus 120 l~~~~~~i~~a~~~G~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P-~~~~~lv~~l~~~~ 198 (298)
T 2cw6_A 120 FQRFDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAEVTKKFYSMGCYEISLGDTIGVGTP-GIMKDMLSAVMQEV 198 (298)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEETTTCBTTTBSCCHHHHHHHHHHHHHTTCSEEEEEETTSCCCH-HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCcCH-HHHHHHHHHHHHhC
Confidence 3455666788888887432110 0001134566666666554 56665 7899999888 55666666665543
No 30
>3vej_A Ubiquitin-like protein MDY2; alpha helical, dimerization, homodimerization, protein bindi; 1.23A {Saccharomyces cerevisiae}
Probab=23.95 E-value=19 Score=20.53 Aligned_cols=15 Identities=40% Similarity=0.643 Sum_probs=12.6
Q ss_pred ccccccCcHHHHHHH
Q psy3321 65 TSVPWDKTVLLCINV 79 (110)
Q Consensus 65 TAv~Ws~v~~l~~~V 79 (110)
-.|||+.+..|.++.
T Consensus 4 l~VPWd~Ie~lL~~~ 18 (41)
T 3vej_A 4 LTVPWDDIEALLKNN 18 (41)
T ss_dssp TTSCHHHHHHHHHHH
T ss_pred eecCHHHHHHHHHHH
Confidence 359999999998776
No 31
>1cxq_A Avian sarcoma virus integrase; mixed beta-sheet surrounded by alpha-helices, transferase; HET: EPE; 1.02A {Avian sarcoma virus} SCOP: c.55.3.2 PDB: 1cxu_A* 1czb_A* 1cz9_A* 1asu_A* 1asw_A* 1asv_A 1a5v_A* 1a5w_A* 1a5x_A* 1vsf_A* 1vse_A* 3o4n_A* 1vsm_A 3o4q_A* 1vsd_A* 1vsh_A* 1vsi_A* 1vsj_A* 1vsk_A 1vsl_A
Probab=23.95 E-value=1.5e+02 Score=19.12 Aligned_cols=72 Identities=7% Similarity=-0.033 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHcCCc-ccCCcccccccccccchhhchHHHHhccCceeeeeccccccC--cHHHHHHHHHHHHHHHHhcC
Q psy3321 15 NEDKIYSIAKRYGGI-PAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDK--TVLLCINVKKRLTRECTVSL 91 (110)
Q Consensus 15 ~~~~~~~I~~~~GGv-~~G~~~G~~W~~~rF~~PYLRD~l~~~G~~~DT~ETAv~Ws~--v~~l~~~V~~a~~~a~~~~g 91 (110)
..+...++++.+|-- .+-..+|.. |....+++++.++|+-...--.-.+|+| ++.....+++.+..-+...+
T Consensus 54 v~~~l~~~~~~~g~p~~i~sDnG~~-----f~s~~~~~~~~~~gi~~~~~~p~~p~~ng~~Er~~~tlk~~~~~~~~~~~ 128 (162)
T 1cxq_A 54 AQHHWATAIAVLGRPKAIKTDNGSC-----FTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDG 128 (162)
T ss_dssp HHHHHHHHHHHHCCCSEEECCSCHH-----HHSHHHHHHHHHHTCEEECCCCC----CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCeEEEeCCchh-----hhhHHHHHHHHHCCCeEeeCCCCCCccCCEEehHHHHHHHHHHHHcCccc
Confidence 344455667777631 222344433 4455668899999998877777788998 78888888888877766653
No 32
>3kks_A Integrase, IN; beta-strands flanked by alpha-helices, DNA binding protein; 2.20A {Bovine immunodeficiency virus} PDB: 3kkr_A
Probab=23.74 E-value=1.4e+02 Score=18.61 Aligned_cols=67 Identities=15% Similarity=0.076 Sum_probs=43.4
Q ss_pred HHHHHHHHHHcCCcccCCcccccccccccchhhchHHHHhccCceeeeeccccccC--cHHHHHHHHHHHHHHH
Q psy3321 16 EDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDK--TVLLCINVKKRLTREC 87 (110)
Q Consensus 16 ~~~~~~I~~~~GGv~~G~~~G~~W~~~rF~~PYLRD~l~~~G~~~DT~ETAv~Ws~--v~~l~~~V~~a~~~a~ 87 (110)
.+...+++.++|-..+-..+|.. |....+++++..+|+-....-.-.||+| ++.....+++.+...+
T Consensus 42 ~~~l~~~~~~~gp~~i~sDnG~~-----f~s~~~~~~~~~~gi~~~~~~p~~p~~ng~~Er~~~~lk~~~~~~~ 110 (152)
T 3kks_A 42 ALCILQLIQRYTVLHLHSDNGPC-----FTAHRIENLCKYLGITKTTGIPYNPQSQGVVERAHRDLKDRLAAYQ 110 (152)
T ss_dssp HHHHHHHHHHSCCSEEEECSCHH-----HHSHHHHHHHHHTTCEEEESSCSCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHhCCcEEecCCchH-----hhHHHHHHHHHHcCCeecccCCcCCCccchhHHHHHHHHHHHHHHh
Confidence 33445788888833333345433 5555678899999998777777778876 5666666666555443
No 33
>4b0y_A Heme-binding protein 2; apoptosis; 3.50A {Homo sapiens}
Probab=23.47 E-value=88 Score=23.23 Aligned_cols=43 Identities=14% Similarity=0.036 Sum_probs=29.4
Q ss_pred EEEEecC--hHHHHhHHHHHHHHHHHcCCcccCCcccccccccccchhh
Q psy3321 2 ALLVLGD--PEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAY 48 (110)
Q Consensus 2 ~lgfEG~--~~~V~~~~~~~~~I~~~~GGv~~G~~~G~~W~~~rF~~PY 48 (110)
++.|.|. ++.+..+.++..+.+++.|-.+. +.-++-.+|+.|+
T Consensus 161 Vr~FsG~~~~~~~~~~~~~L~~~L~~~g~~~~----~~~y~~A~Yd~P~ 205 (227)
T 4b0y_A 161 VRSFDGFSSAQKNQEQLLTLASILREDGKVFD----EKVYYTAGYNSPV 205 (227)
T ss_dssp EEEESSCCCHHHHHHHHHHHHHHHHHHTCCBC----SSCEEEEECC---
T ss_pred EEEecCcCCHHHHHHHHHHHHHHHHhCCCccC----CCcEEEEEeCCCC
Confidence 5678885 45688888999999999986554 3445666677775
No 34
>3r3t_A 30S ribosomal protein S6; structural genomics, center for structural genomics of infec diseases, csgid, beta-barrel, cytosol; 2.30A {Bacillus anthracis}
Probab=23.33 E-value=86 Score=20.02 Aligned_cols=54 Identities=6% Similarity=-0.023 Sum_probs=36.3
Q ss_pred ChHHHHhHHHHHHHHHHHcCCcccCCcccccccccccchhhchHHHHhccCceeeeecc
Q psy3321 8 DPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETS 66 (110)
Q Consensus 8 ~~~~V~~~~~~~~~I~~~~GGv~~G~~~G~~W~~~rF~~PYLRD~l~~~G~~~DT~ETA 66 (110)
++++++...+++.+++.++||...... .|=..++.-|- +-..+-.++.=+|++.
T Consensus 18 ~~e~~~~~~~~~~~~i~~~gg~i~~~e---~wG~R~LAY~I--~k~~~G~Y~l~~f~a~ 71 (99)
T 3r3t_A 18 EEEAQKALVERFAGVLTNNGAEIINTK---EWGKRRLAYEI--NDLREGFYMILNVNAN 71 (99)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCCCCCCC---CCCSCCCCCCC--CCCCCSCCCCCCCCCC
T ss_pred CHHHHHHHHHHHHHHHHHCCCEEEEEE---EeeccccCcCc--CCCCEEEEEEEEEEeC
Confidence 457799999999999999999877443 36555554432 2234555666666653
No 35
>1c0m_A Protein (integrase); HIV, X-RAY crystallography, protein structure, transferase; 2.53A {Rous sarcoma virus} SCOP: b.34.7.1 c.55.3.2 PDB: 1c1a_A
Probab=22.00 E-value=2.1e+02 Score=20.04 Aligned_cols=70 Identities=9% Similarity=-0.006 Sum_probs=46.7
Q ss_pred HhHHHHHHHHHHHcCC-cccCCcccccccccccchhhchHHHHhccCceeeeeccccccC--cHHHHHHHHHHHHHHH
Q psy3321 13 KNNEDKIYSIAKRYGG-IPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDK--TVLLCINVKKRLTREC 87 (110)
Q Consensus 13 ~~~~~~~~~I~~~~GG-v~~G~~~G~~W~~~rF~~PYLRD~l~~~G~~~DT~ETAv~Ws~--v~~l~~~V~~a~~~a~ 87 (110)
....+...++++.+|- ..+-..+|.. |....+++++.++|+-....-...+|+| ++.....+++.+..-+
T Consensus 51 ~~v~~~l~~~~~~~g~p~~i~sDnG~~-----f~s~~~~~~~~~~gI~~~~~~p~~p~~ng~vEr~~~tlk~~~~~~~ 123 (238)
T 1c0m_A 51 VAVQHHWATAIAVLGRPKAIKTDNGSC-----FTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDRIRVLA 123 (238)
T ss_dssp HHHHHHHHHHHHHHCCCSEEEECSCHH-----HHSHHHHHHHHHHTCEEEECCSSSSTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcEEEECCCCc-----cccHHHHHHHHHCCCEEEecCCCCcccccHHHHHHHHHHHHHHHhc
Confidence 3334445566677773 1233345433 5555567899999999988888899998 6777777776666543
No 36
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=21.91 E-value=77 Score=19.67 Aligned_cols=21 Identities=24% Similarity=0.507 Sum_probs=18.1
Q ss_pred ChHHHHhHHHHHHHHHHHcCC
Q psy3321 8 DPEDVKNNEDKIYSIAKRYGG 28 (110)
Q Consensus 8 ~~~~V~~~~~~~~~I~~~~GG 28 (110)
++++++...++...++.++||
T Consensus 57 ~ee~~~~~vek~~~~i~~~Gg 77 (77)
T 3zzp_A 57 DQSQLQNEKEIIQRALENYGA 77 (77)
T ss_dssp CHHHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHhcCC
Confidence 356789999999999999997
No 37
>2wdq_C Succinate dehydrogenase cytochrome B556 subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_C* 2acz_C* 1nek_C* 2wdr_C* 2wdv_C* 2wp9_C* 2ws3_C* 2wu5_C* 2wu2_C*
Probab=21.82 E-value=18 Score=24.27 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=19.4
Q ss_pred chHHHHhccCceeeeeccccccCcH
Q psy3321 49 IRDFACDYYFIGDSFETSVPWDKTV 73 (110)
Q Consensus 49 LRD~l~~~G~~~DT~ETAv~Ws~v~ 73 (110)
+|+.+||+|+..||.++.-.+..+.
T Consensus 89 iRhl~~D~G~g~~~~~~~~~~~~~v 113 (129)
T 2wdq_C 89 IRHMMMDFGYLEETFEAGKRSAKIS 113 (129)
T ss_dssp HHHHHHHTTSSCCSHHHHHHHHHHH
T ss_pred HHHHHhhccccccccHHHHHHHHHH
Confidence 7999999999988877766554443
No 38
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=21.70 E-value=51 Score=21.93 Aligned_cols=30 Identities=30% Similarity=0.599 Sum_probs=22.7
Q ss_pred CEEEEecChHHHHhHHHHHHHHHHHcCCcccCC
Q psy3321 1 MALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGE 33 (110)
Q Consensus 1 ~~lgfEG~~~~V~~~~~~~~~I~~~~GGv~~G~ 33 (110)
+++.|.|+-+. -+..+.+++.++||.+.++
T Consensus 14 ~~~ViTG~l~~---~R~e~k~~ie~~Ggkv~~s 43 (113)
T 2cok_A 14 MKILTLGKLSR---NKDEVKAMIEKLGGKLTGT 43 (113)
T ss_dssp CEEEECSCCSS---CHHHHHHHHHHTTCEEESC
T ss_pred CEEEEEecCCC---CHHHHHHHHHHCCCEEcCc
Confidence 47889997532 5788889999999965544
No 39
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A*
Probab=21.33 E-value=10 Score=30.99 Aligned_cols=72 Identities=8% Similarity=-0.083 Sum_probs=37.3
Q ss_pred HHHHhHHHHHHHHHHHcCCcccCCcc-cccccccccchhh--chHH-HHhccCceeeeeccccccCcHHHHHHHHHHHH
Q psy3321 10 EDVKNNEDKIYSIAKRYGGIPAGESN-GRRGYMLTYIIAY--IRDF-ACDYYFIGDSFETSVPWDKTVLLCINVKKRLT 84 (110)
Q Consensus 10 ~~V~~~~~~~~~I~~~~GGv~~G~~~-G~~W~~~rF~~PY--LRD~-l~~~G~~~DT~ETAv~Ws~v~~l~~~V~~a~~ 84 (110)
++++.+.+.+.++++.+|+....... -..|. .++...+ +|+. ++..+- -..++++|||+++++.+.+.+++.
T Consensus 344 ~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~-~~~~~~~w~~r~~~~~~~~~--~~~d~~vP~s~l~~~~~~~~~~l~ 419 (534)
T 1w1o_A 344 AAVDQELASVLGTLSYVEGFAFQRDVAYAAFL-DRVHGEEVALNKLGLWRVPH--PWLNMFVPRSRIADFDRGVFKGIL 419 (534)
T ss_dssp CHHHHHHHHHHTTCCCCTTCEEEEEEEHHHHH-THHHHHHHHHHHTTCSSSCC--CCEEEEEEGGGHHHHHHHHTTTTT
T ss_pred hhhHHHHHHHHHhhcccCCcceeccchHHHHh-hhhhhhHHHHhhccccccCC--ccccEEecHHHHHhHHHHHHHHHh
Confidence 66777888888888887773221110 00111 1111111 1111 111110 022888999999999988755443
No 40
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=21.29 E-value=59 Score=18.37 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=18.0
Q ss_pred cccccc----CcHHHHHHHHHHHHHHHHhc
Q psy3321 65 TSVPWD----KTVLLCINVKKRLTRECTVS 90 (110)
Q Consensus 65 TAv~Ws----~v~~l~~~V~~a~~~a~~~~ 90 (110)
++.+|+ ++-.-|++|++|++.-+.+.
T Consensus 6 s~~tr~~rkerIv~eCnavrqALQdLlseY 35 (40)
T 4e17_B 6 SSCTRDDRRERIVAECNAVRQALQDLLSEY 35 (40)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455665 57788999999999988764
No 41
>3l3u_A POL polyprotein; DNA integration, AIDS, integrase, endonuclease, polynucleotidyl transferase, DNA binding, viral protein; 1.40A {Human immunodeficiency virus 1} PDB: 3ao1_A 3l3v_A* 3ovn_A* 3ao2_A* 3ao3_A* 3ao4_A* 3ao5_A* 2itg_A 1biz_A 1biu_A 1b9d_A 4dmn_A* 2b4j_A 1itg_A 1b92_A 1bl3_A 1bi4_A 1bis_A 1b9f_A 1bi4_B ...
Probab=21.28 E-value=1.7e+02 Score=18.71 Aligned_cols=66 Identities=11% Similarity=0.009 Sum_probs=44.6
Q ss_pred HHHHHHHHHHcCCcccCCcccccccccccchhhchHHHHhccCceeeeeccccccC--cHHHHHHHHHHHHHH
Q psy3321 16 EDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDK--TVLLCINVKKRLTRE 86 (110)
Q Consensus 16 ~~~~~~I~~~~GGv~~G~~~G~~W~~~rF~~PYLRD~l~~~G~~~DT~ETAv~Ws~--v~~l~~~V~~a~~~a 86 (110)
.....+++.++|-..+-+.+|.. |...-+++++..+|+-...--.-.||+| ++.....+++.+...
T Consensus 49 ~~~l~~~~~~~~~~~i~sD~G~~-----f~s~~~~~~~~~~gi~~~~~~p~~p~~ng~~Er~~~~lk~~~~~~ 116 (163)
T 3l3u_A 49 AYFLLKLAGRWPVKTVHTDNGSN-----FTSTTVKAACDWAGIKQEDGIPYNPQSQGVIESMNKELKKIIGQV 116 (163)
T ss_dssp HHHHHHHHHHSCCCEEEECCCGG-----GGSHHHHHHHHHHTCEEEETCCCCCCSTTCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcEEeecChHh-----hhhHHHHHHHHHCCceeeeCCCCCcccccHHHHHHHHHHHHHHHh
Confidence 33444577788754444455543 5556678899999998887777788887 567777776655443
No 42
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.94 E-value=61 Score=21.53 Aligned_cols=29 Identities=28% Similarity=0.484 Sum_probs=21.2
Q ss_pred CEEEEecChHHHHhHHHHHHHHHHHcCCccc
Q psy3321 1 MALLVLGDPEDVKNNEDKIYSIAKRYGGIPA 31 (110)
Q Consensus 1 ~~lgfEG~~~~V~~~~~~~~~I~~~~GGv~~ 31 (110)
+++.|+|.-+ ...+..+.+++.++||.+.
T Consensus 26 ~~~v~TG~l~--~~~R~e~~~~i~~~Ggkv~ 54 (112)
T 2ebu_A 26 LIFVITGVLE--SIERDEAKSLIERYGGKVT 54 (112)
T ss_dssp CEEEECSCCS--SSCHHHHHHHHHHTTCEEC
T ss_pred CEEEEeeeCC--CCCHHHHHHHHHHcCCEEe
Confidence 4688898743 2357788899999999543
No 43
>2kxh_B Peptide of FAR upstream element-binding protein 1; RRM, FIR, FBP, protein-protein complex, protein binding; NMR {Homo sapiens}
Probab=20.38 E-value=90 Score=16.65 Aligned_cols=19 Identities=26% Similarity=0.382 Sum_probs=14.6
Q ss_pred HhHHHHHHHHHHHcCCccc
Q psy3321 13 KNNEDKIYSIAKRYGGIPA 31 (110)
Q Consensus 13 ~~~~~~~~~I~~~~GGv~~ 31 (110)
.-...++++|+.+.||-..
T Consensus 11 adA~~RaRQIaAKig~~~~ 29 (31)
T 2kxh_B 11 KDALQRARQIAAKIGGDAG 29 (31)
T ss_dssp HHHHHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHHhcCCCC
Confidence 4456788999999998654
No 44
>1ex4_A Integrase; SH3-like domain, nonspecific DNA binding beta sheet, CIS-Pro viral protein; HET: CPS; 2.80A {Human immunodeficiency virus 1} SCOP: b.34.7.1 c.55.3.2 PDB: 1qmc_A 1ihv_A 1ihw_A
Probab=20.20 E-value=2e+02 Score=20.07 Aligned_cols=63 Identities=14% Similarity=0.016 Sum_probs=39.3
Q ss_pred HHHHHHHHHcCCcccCCcccccccccccchhhchHHHHhccCceeeeeccccccC--cHHHHHHHHHHHH
Q psy3321 17 DKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDK--TVLLCINVKKRLT 84 (110)
Q Consensus 17 ~~~~~I~~~~GGv~~G~~~G~~W~~~rF~~PYLRD~l~~~G~~~DT~ETAv~Ws~--v~~l~~~V~~a~~ 84 (110)
..+.+++.++|-..+-+.+|.. |....+++++..+|+-...--.-.+|+| ++.....+++.+.
T Consensus 50 ~~~~~~~~~~~~~~i~sDnG~e-----F~s~~~~~~~~~~gI~~~~s~p~~P~~NG~vEr~n~tlk~~l~ 114 (239)
T 1ex4_A 50 YFLLKLAGRWPVKTIHTDNGSN-----FTGATVRAACDWAGIKQEDGIPYNPQSQGVVESMNKELKKIIG 114 (239)
T ss_dssp HHHHHHHHHSCCCEEEECCCHH-----HHCHHHHHHHTTTTCEECCCCC---CSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcEEEecCcHH-----HHHHHHHHHHHHCCCeEEECCCCCcccchHHHHHHHHHHHHHH
Confidence 3444566666644444556544 4444568889999998888778888988 6667666666553
Done!