BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3327
(125 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TW2|A Chain A, High Resolution Structure Of Human Histidine Triad
Nucleotide-binding Protein 1 (hhint1)/amp Complex In A
Monoclinic Space Group
pdb|3TW2|B Chain B, High Resolution Structure Of Human Histidine Triad
Nucleotide-binding Protein 1 (hhint1)/amp Complex In A
Monoclinic Space Group
Length = 126
Score = 167 bits (423), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 75/123 (60%), Positives = 94/123 (76%)
Query: 3 EVEKAAQAAPGGDTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSL 62
E+ KA A PGGDTIFG+I+RKEIP I EDD+C+AF+DI+P+AP HFLVIP+K I +
Sbjct: 4 EIAKAQVARPGGDTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQI 63
Query: 63 SEAGDEDAEILGHLMVTASKLAKKQGLDNGYRLVVNNGRHGAQSVYHLHIHVMGGRQLRW 122
S A D+D +LGHLM+ K A GL+ GYR+VVN G G QSVYH+H+HV+GGRQ+ W
Sbjct: 64 SVAEDDDESLLGHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMHW 123
Query: 123 PPG 125
PPG
Sbjct: 124 PPG 126
>pdb|4EQE|A Chain A, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Lys-Ams
pdb|4EQE|B Chain B, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Lys-Ams
pdb|4EQG|A Chain A, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Ala-Ams
pdb|4EQG|B Chain B, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Ala-Ams
pdb|4EQH|A Chain A, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Trp-Ams
pdb|4EQH|B Chain B, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Trp-Ams
Length = 128
Score = 167 bits (423), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 75/123 (60%), Positives = 94/123 (76%)
Query: 3 EVEKAAQAAPGGDTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSL 62
E+ KA A PGGDTIFG+I+RKEIP I EDD+C+AF+DI+P+AP HFLVIP+K I +
Sbjct: 6 EIAKAQVARPGGDTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQI 65
Query: 63 SEAGDEDAEILGHLMVTASKLAKKQGLDNGYRLVVNNGRHGAQSVYHLHIHVMGGRQLRW 122
S A D+D +LGHLM+ K A GL+ GYR+VVN G G QSVYH+H+HV+GGRQ+ W
Sbjct: 66 SVAEDDDESLLGHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMHW 125
Query: 123 PPG 125
PPG
Sbjct: 126 PPG 128
>pdb|1KPA|A Chain A, Pkci-1-Zinc
pdb|1KPA|B Chain B, Pkci-1-Zinc
pdb|1KPC|A Chain A, Pkci-1-Apo+zinc
pdb|1KPC|B Chain B, Pkci-1-Apo+zinc
pdb|1KPC|C Chain C, Pkci-1-Apo+zinc
pdb|1KPC|D Chain D, Pkci-1-Apo+zinc
pdb|1KPE|A Chain A, Pkci-Transition State Analog
pdb|1KPF|A Chain A, Pkci-Substrate Analog
pdb|1AV5|A Chain A, Pkci-Substrate Analog
pdb|1AV5|B Chain B, Pkci-Substrate Analog
pdb|1KPE|B Chain B, Pkci-Transition State Analog
Length = 126
Score = 167 bits (423), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 75/123 (60%), Positives = 94/123 (76%)
Query: 3 EVEKAAQAAPGGDTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSL 62
E+ KA A PGGDTIFG+I+RKEIP I EDD+C+AF+DI+P+AP HFLVIP+K I +
Sbjct: 4 EIAKAQVARPGGDTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQI 63
Query: 63 SEAGDEDAEILGHLMVTASKLAKKQGLDNGYRLVVNNGRHGAQSVYHLHIHVMGGRQLRW 122
S A D+D +LGHLM+ K A GL+ GYR+VVN G G QSVYH+H+HV+GGRQ+ W
Sbjct: 64 SVAEDDDESLLGHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMHW 123
Query: 123 PPG 125
PPG
Sbjct: 124 PPG 126
>pdb|1KPB|A Chain A, Pkci-1-Apo
pdb|1KPB|B Chain B, Pkci-1-Apo
Length = 125
Score = 167 bits (423), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 75/123 (60%), Positives = 94/123 (76%)
Query: 3 EVEKAAQAAPGGDTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSL 62
E+ KA A PGGDTIFG+I+RKEIP I EDD+C+AF+DI+P+AP HFLVIP+K I +
Sbjct: 3 EIAKAQVARPGGDTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQI 62
Query: 63 SEAGDEDAEILGHLMVTASKLAKKQGLDNGYRLVVNNGRHGAQSVYHLHIHVMGGRQLRW 122
S A D+D +LGHLM+ K A GL+ GYR+VVN G G QSVYH+H+HV+GGRQ+ W
Sbjct: 63 SVAEDDDESLLGHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMHW 122
Query: 123 PPG 125
PPG
Sbjct: 123 PPG 125
>pdb|3O1X|A Chain A, High Resolution Crystal Structure Of Histidine Triad
Nucleotide- Binding Protein 1 (Hint1) C84a Mutant From
Rabbit Complexed With Adenosine
Length = 126
Score = 167 bits (422), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 75/123 (60%), Positives = 92/123 (74%)
Query: 3 EVEKAAQAAPGGDTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSL 62
E+ KA A PGGDTIFG+I+RKEIP I EDD+C+AF+DI+P+AP HFLVIP+K I +
Sbjct: 4 EIAKAQVARPGGDTIFGKIIRKEIPAKIIFEDDQCLAFHDISPQAPTHFLVIPKKHISQI 63
Query: 63 SEAGDEDAEILGHLMVTASKLAKKQGLDNGYRLVVNNGRHGAQSVYHLHIHVMGGRQLRW 122
S A D D +LGHLM+ K A GL GYR+VVN G G QSVYH+H+HV+GGRQ+ W
Sbjct: 64 SAAEDADESLLGHLMIVGKKAAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMNW 123
Query: 123 PPG 125
PPG
Sbjct: 124 PPG 126
>pdb|1RZY|A Chain A, Crystal Structure Of Rabbit Hint Complexed With N-
Ethylsulfamoyladenosine
pdb|3QGZ|A Chain A, Re-Investigated High Resolution Crystal Structure Of
Histidine Triad Nucleotide-Binding Protein 1 (Hint1)
From Rabbit Complexed With Adenosine
Length = 126
Score = 166 bits (421), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 75/123 (60%), Positives = 92/123 (74%)
Query: 3 EVEKAAQAAPGGDTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSL 62
E+ KA A PGGDTIFG+I+RKEIP I EDD+C+AF+DI+P+AP HFLVIP+K I +
Sbjct: 4 EIAKAQVARPGGDTIFGKIIRKEIPAKIIFEDDQCLAFHDISPQAPTHFLVIPKKHISQI 63
Query: 63 SEAGDEDAEILGHLMVTASKLAKKQGLDNGYRLVVNNGRHGAQSVYHLHIHVMGGRQLRW 122
S A D D +LGHLM+ K A GL GYR+VVN G G QSVYH+H+HV+GGRQ+ W
Sbjct: 64 SAAEDADESLLGHLMIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMNW 123
Query: 123 PPG 125
PPG
Sbjct: 124 PPG 126
>pdb|3O1Z|A Chain A, High Resolution Crystal Structure Of Histidine Triad
Nucleotide- Binding Protein 1 (Hint1) Double Cysteine
Mutant From Rabbit
Length = 126
Score = 164 bits (414), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 74/123 (60%), Positives = 91/123 (73%)
Query: 3 EVEKAAQAAPGGDTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSL 62
E+ KA A PGGDTIFG+I+RKEIP I EDD+ +AF+DI+P+AP HFLVIP+K I +
Sbjct: 4 EIAKAQVARPGGDTIFGKIIRKEIPAKIIFEDDQALAFHDISPQAPTHFLVIPKKHISQI 63
Query: 63 SEAGDEDAEILGHLMVTASKLAKKQGLDNGYRLVVNNGRHGAQSVYHLHIHVMGGRQLRW 122
S A D D +LGHLM+ K A GL GYR+VVN G G QSVYH+H+HV+GGRQ+ W
Sbjct: 64 SAAEDADESLLGHLMIVGKKAAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMNW 123
Query: 123 PPG 125
PPG
Sbjct: 124 PPG 126
>pdb|3O1C|A Chain A, High Resolution Crystal Structure Of Histidine Triad
Nucleotide- Binding Protein 1 (Hint1) C38a Mutant From
Rabbit Complexed With Adenosine
Length = 126
Score = 163 bits (413), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 74/123 (60%), Positives = 91/123 (73%)
Query: 3 EVEKAAQAAPGGDTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSL 62
E+ KA A PGGDTIFG+I+RKEIP I EDD+ +AF+DI+P+AP HFLVIP+K I +
Sbjct: 4 EIAKAQVARPGGDTIFGKIIRKEIPAKIIFEDDQALAFHDISPQAPTHFLVIPKKHISQI 63
Query: 63 SEAGDEDAEILGHLMVTASKLAKKQGLDNGYRLVVNNGRHGAQSVYHLHIHVMGGRQLRW 122
S A D D +LGHLM+ K A GL GYR+VVN G G QSVYH+H+HV+GGRQ+ W
Sbjct: 64 SAAEDADESLLGHLMIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMNW 123
Query: 123 PPG 125
PPG
Sbjct: 124 PPG 126
>pdb|3RHN|A Chain A, Histidine Triad Nucleotide-Binding Protein (Hint) From
Rabbit Complexed With Gmp
pdb|4RHN|A Chain A, Histidine Triad Nucleotide-binding Protein (hint) From
Rabbit Complexed With Adenosine
pdb|5RHN|A Chain A, Histidine Triad Nucleotide-Binding Protein (Hint) From
Rabbit Complexed With 8-Br-Amp
pdb|6RHN|A Chain A, Histidine Triad Nucleotide-Binding Protein (Hint) From
Rabbit Without Nucleotide
Length = 115
Score = 159 bits (403), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 71/114 (62%), Positives = 87/114 (76%)
Query: 12 PGGDTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAE 71
PGGDTIFG+I+RKEIP I EDD+C+AF+DI+P+AP HFLVIP+K I +S A D D
Sbjct: 2 PGGDTIFGKIIRKEIPAKIIFEDDQCLAFHDISPQAPTHFLVIPKKHISQISAAEDADES 61
Query: 72 ILGHLMVTASKLAKKQGLDNGYRLVVNNGRHGAQSVYHLHIHVMGGRQLRWPPG 125
+LGHLM+ K A GL GYR+VVN G G QSVYH+H+HV+GGRQ+ WPPG
Sbjct: 62 LLGHLMIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMNWPPG 115
>pdb|3N1S|A Chain A, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|B Chain B, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|E Chain E, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|F Chain F, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|I Chain I, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|J Chain J, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|M Chain M, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|N Chain N, Crystal Structure Of Wild Type Echint Gmp Complex
Length = 119
Score = 103 bits (257), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 80/107 (74%), Gaps = 1/107 (0%)
Query: 15 DTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILG 74
+TIF +I+R+EIP + +++DD AF DI+P+AP H L+IP IP++++ E + LG
Sbjct: 4 ETIFSKIIRREIPSDIVYQDDLVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQALG 63
Query: 75 HLMVTASKLAKKQGL-DNGYRLVVNNGRHGAQSVYHLHIHVMGGRQL 120
++ A+K+A+++G+ ++GYRL++N RHG Q VYH+H+H++GGR L
Sbjct: 64 RMITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHMHLLGGRPL 110
>pdb|3OJ7|A Chain A, Crystal Structure Of A Histidine Triad Family Protein From
Entamoeba Histolytica, Bound To Sulfate
pdb|3OMF|A Chain A, Crystal Structure Of A Histidine Triad Family Protein From
Entamoeba Histolytica, Bound To Amp
pdb|3OXK|A Chain A, Crystal Structure Of A Histidine Triad Family Protein From
Entamoeba Histolytica, Bound To Gmp
Length = 117
Score = 101 bits (252), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 70/107 (65%), Gaps = 1/107 (0%)
Query: 16 TIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGH 75
IF +I +K+IP ++EDD+ AF DINP APIH LVIP++ I SL+E +E+ +G
Sbjct: 9 CIFCKIAQKQIPSTIVYEDDEIFAFKDINPIAPIHILVIPKQHIASLNEITEENEAFIGK 68
Query: 76 LMVTASKLAKKQGLDNGYRLVVNNGRHGAQSVYHLHIHVMGGRQLRW 122
++ S + KK+ GYR+V N G Q+V H+H H++GG++L W
Sbjct: 69 VLYKVSLIGKKE-CPEGYRVVNNIGEDAGQTVKHIHFHILGGKKLAW 114
>pdb|4EGU|A Chain A, 0.95a Resolution Structure Of A Histidine Triad Protein
From Clostridium Difficile
pdb|4EGU|B Chain B, 0.95a Resolution Structure Of A Histidine Triad Protein
From Clostridium Difficile
Length = 119
Score = 100 bits (250), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 72/107 (67%), Gaps = 1/107 (0%)
Query: 15 DTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILG 74
D IF +I EIP ++EDD+ +AFND+NP AP H LV+P+K SL + D++ +I+
Sbjct: 5 DCIFCKIANGEIPSTKVYEDDRVLAFNDLNPVAPYHILVVPKKHYDSLIDIPDKEMDIVS 64
Query: 75 HLMVTASKLAKKQGLD-NGYRLVVNNGRHGAQSVYHLHIHVMGGRQL 120
H+ V +K+AK++G D G+R++ N G G Q V HLH H++ G++L
Sbjct: 65 HIHVVINKIAKEKGFDQTGFRVINNCGSDGGQEVKHLHYHILAGKKL 111
>pdb|3N1T|A Chain A, Crystal Structure Of The H101a Mutant Echint Gmp Complex
pdb|3N1T|B Chain B, Crystal Structure Of The H101a Mutant Echint Gmp Complex
pdb|3N1T|E Chain E, Crystal Structure Of The H101a Mutant Echint Gmp Complex
pdb|3N1T|F Chain F, Crystal Structure Of The H101a Mutant Echint Gmp Complex
Length = 119
Score = 100 bits (248), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 79/107 (73%), Gaps = 1/107 (0%)
Query: 15 DTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILG 74
+TIF +I+R+EIP + +++DD AF DI+P+AP H L+IP IP++++ E + LG
Sbjct: 4 ETIFSKIIRREIPSDIVYQDDLVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQALG 63
Query: 75 HLMVTASKLAKKQGL-DNGYRLVVNNGRHGAQSVYHLHIHVMGGRQL 120
++ A+K+A+++G+ ++GYRL++N RHG Q VYH+ +H++GGR L
Sbjct: 64 RMITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIAMHLLGGRPL 110
>pdb|1XQU|A Chain A, Hit Family Hydrolase From Clostridium Thermocellum Cth-393
pdb|1XQU|B Chain B, Hit Family Hydrolase From Clostridium Thermocellum Cth-393
Length = 147
Score = 93.2 bits (230), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 2 SEVEKAAQAAPGGDTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPS 61
S +KA + +F +I+++E+P +ED++ +A DINP AP+H L+IP++ I +
Sbjct: 23 SLYKKAGLXYTLENCVFCKIIKRELPSTIYYEDERVIAIKDINPAAPVHVLIIPKEHIAN 82
Query: 62 LSEAGDEDAEILGHLMVTASKLAKKQGL-DNGYRLVVNNGRHGAQSVYHLHIHVMGG 117
+ E + +A+IL + A+K+A+ G+ + GYRL+ N G Q+V+HLH H++GG
Sbjct: 83 VKEINESNAQILIDIHKAANKVAEDLGIAEKGYRLITNCGVAAGQTVFHLHYHLLGG 139
>pdb|3KSV|A Chain A, Hypothetical Protein From Leishmania Major
Length = 149
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%)
Query: 15 DTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILG 74
+ IF +I++ +IPC + E K +AF DINP + H LVIP++ L E G EDA +G
Sbjct: 12 NCIFCKIIKGDIPCAKVAETSKALAFMDINPLSRGHMLVIPKEHASCLHELGMEDAADVG 71
Query: 75 HLMVTASKLAKKQGLDNGYRLVVNNGRHGAQSVYHLHIHVM 115
L+ AS+ Y ++ NNG Q V H+H H++
Sbjct: 72 VLLAKASRAVAGPDGSMQYNVLQNNGSLAHQEVPHVHFHII 112
>pdb|3LB5|A Chain A, Crystal Structure Of Hit-Like Protein Involved In
Cell-Cycle Regulation From Bartonella Henselae With
Unknown Ligand
pdb|3LB5|B Chain B, Crystal Structure Of Hit-Like Protein Involved In
Cell-Cycle Regulation From Bartonella Henselae With
Unknown Ligand
pdb|3LB5|C Chain C, Crystal Structure Of Hit-Like Protein Involved In
Cell-Cycle Regulation From Bartonella Henselae With
Unknown Ligand
pdb|3LB5|D Chain D, Crystal Structure Of Hit-Like Protein Involved In
Cell-Cycle Regulation From Bartonella Henselae With
Unknown Ligand
Length = 161
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 63/112 (56%), Gaps = 6/112 (5%)
Query: 7 AAQAAPGGDTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAG 66
+ + A + IF +++R EIP ++EDD +AF DI P+AP H LVIP+K +L +A
Sbjct: 21 SMKQAYDNNNIFAKLIRNEIPSVRVYEDDDVIAFMDIMPQAPGHTLVIPKKGSRNLLDA- 79
Query: 67 DEDAEILGHLMVTASKLA---KKQGLDNGYRLVVNNGRHGAQSVYHLHIHVM 115
D E L ++ K+A KK +G ++ N Q+VYHLH H++
Sbjct: 80 --DTETLFPVIKAVQKIAKAVKKAFQADGITVMQFNEAASQQTVYHLHFHII 129
>pdb|2EO4|A Chain A, Crystal Structure Of Hypothetical Histidine Triad
Nucleotide-Binding Protein St2152 From Sulfolobus
Tokodaii Strain7
Length = 149
Score = 58.5 bits (140), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 52/98 (53%)
Query: 18 FGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLM 77
F I+ +E+ F++ED+K A D P + H LVIP+K + EA ++ L ++
Sbjct: 3 FCSIINRELEGYFVYEDEKFAAILDKYPVSLGHTLVIPKKHFENYLEADEDTLAELAKVV 62
Query: 78 VTASKLAKKQGLDNGYRLVVNNGRHGAQSVYHLHIHVM 115
S K +G RL+ N GR Q ++HLH+H++
Sbjct: 63 KLVSLGIKDAVKADGLRLLTNIGRSAGQVIFHLHVHII 100
>pdb|1Y23|A Chain A, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|B Chain B, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|C Chain C, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|D Chain D, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|E Chain E, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
Length = 145
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 55/101 (54%)
Query: 15 DTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILG 74
+ IF +I+ +IP ++ED+ +AF DI+ H LVIP+ I ++ E DE A+
Sbjct: 6 NCIFCKIIAGDIPSAKVYEDEHVLAFLDISQVTKGHTLVIPKTHIENVYEFTDELAKQYF 65
Query: 75 HLMVTASKLAKKQGLDNGYRLVVNNGRHGAQSVYHLHIHVM 115
H + ++ + + G + NNG QSV+H H+H++
Sbjct: 66 HAVPKIARAIRDEFEPIGLNTLNNNGEKAGQSVFHYHMHII 106
>pdb|3L7X|A Chain A, The Crystal Structure Of Smu.412c From Streptococcus
Mutans Ua159
Length = 173
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 54/101 (53%)
Query: 15 DTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILG 74
D +F +I+ +IP + ++ED+ +AF DI+ H LVIP++ + + E A L
Sbjct: 37 DCLFCKIVAGDIPSSKVYEDEDVLAFLDISQATKGHTLVIPKEHVRNALEMTQTQAANLF 96
Query: 75 HLMVTASKLAKKQGLDNGYRLVVNNGRHGAQSVYHLHIHVM 115
+ ++ +K +G ++ NN Q+V+H H+H++
Sbjct: 97 ARIPKIARALQKATKADGLNIINNNEETAGQTVFHAHVHLV 137
>pdb|3IMI|A Chain A, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family
Protein From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3IMI|B Chain B, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family
Protein From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3IMI|C Chain C, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family
Protein From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3IMI|D Chain D, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family
Protein From Bacillus Anthracis Str. 'ames Ancestor'
Length = 147
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 58/107 (54%), Gaps = 12/107 (11%)
Query: 15 DTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIP---RKPIPSLSEAGDEDAE 71
+ IF +I+ +I C+ ++ED+ +AF DI+ H LVIP ++ I +L+ E
Sbjct: 10 NCIFCKIIDGQILCSKVYEDEHVLAFLDISQVTKGHTLVIPKVHKQDIFALT------PE 63
Query: 72 ILGHLMVTASKLA---KKQGLDNGYRLVVNNGRHGAQSVYHLHIHVM 115
I H+ K+A K + G+ L+ NNG Q+V+H H+H++
Sbjct: 64 IASHIFSVVPKIANAIKAEFNPVGFNLLNNNGEKAGQTVFHFHLHLI 110
>pdb|3P0T|A Chain A, Crystal Structure Of An Hit-Like Protein From
Mycobacterium Paratuberculosis
pdb|3P0T|B Chain B, Crystal Structure Of An Hit-Like Protein From
Mycobacterium Paratuberculosis
Length = 138
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 16 TIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGH 75
+IF +I+ +E+P F++EDD VAF I P H LV+PR+ I + D D+
Sbjct: 7 SIFTKIINRELPGRFVYEDDDVVAFLTIEPMTQGHTLVVPREEIDNWQ---DVDSAAFNR 63
Query: 76 LMVTASKLAKKQGLDNGYRLVVNNGRHGAQSVYHLHIHVMGGRQL 120
+M + + K + +R + V HLH+HV R L
Sbjct: 64 VMGVSQLIGK--AVCKAFRTERSGLIIAGLEVPHLHVHVFPTRSL 106
>pdb|3O0M|A Chain A, Crystal Structure Of A Zn-Bound Histidine Triad Family
Protein From Mycobacterium Smegmatis
pdb|3O0M|B Chain B, Crystal Structure Of A Zn-Bound Histidine Triad Family
Protein From Mycobacterium Smegmatis
Length = 149
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 58/113 (51%), Gaps = 4/113 (3%)
Query: 17 IFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHL 76
+F I+ + P I+ED+ + DI P H LVIP+ L++ E + +
Sbjct: 8 VFCAIVSGDAPAIRIYEDENFLGILDIRPFTRGHTLVIPKTHTVDLTDTPPETVAGMAAV 67
Query: 77 MVTASKLAKKQGL-DNGYRLVVNNGRHGAQSVYHLHIHVM---GGRQLRWPPG 125
++ A++ GL +G + +N+G+ Q+V+H+H+HV+ G +L + G
Sbjct: 68 GQRIARAARESGLHADGNNIAINDGKAAFQTVFHIHLHVVPRRNGDKLSFAKG 120
>pdb|3R6F|A Chain A, Crystal Structure Of A Zinc-Containing Hit Family Protein
From Encephalitozoon Cuniculi
Length = 135
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
Query: 17 IFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHL 76
IF + RK N I+E D+ A D P + HFLVIP+ P L E+ L +
Sbjct: 9 IFCTLYRK--GANIIYETDRLFALIDRYPLSKGHFLVIPKAHHPYLHNYKPEE---LSGV 63
Query: 77 MVTASKLAKKQGLDNGYRLVVNNGRHGAQSVYHLHIHVM 115
+ T L +K G + Y ++ NNG H Q V+H+H HV+
Sbjct: 64 LDTIRHLVQKFGFER-YNILQNNGNH--QEVFHVHFHVI 99
>pdb|1EMS|A Chain A, Crystal Structure Of The C. Elegans Nitfhit Protein
pdb|1EMS|B Chain B, Crystal Structure Of The C. Elegans Nitfhit Protein
Length = 440
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Query: 20 RILRKEIPCNFI-HEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMV 78
+ R IP + I + F ++ P H LV P++ +P L++ D + L +
Sbjct: 300 KFARFNIPADHIFYSTPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDAETADLFIVAK 359
Query: 79 TASKLAKKQGLDNGYRLVVNNGRHGAQSVYHLHIHVMGGR 118
+ +K + V +G+ Q+V H+HIH++ R
Sbjct: 360 KVQAMLEKHHNVTSTTICVQDGKDAGQTVPHVHIHILPRR 399
>pdb|3ANO|A Chain A, Crystal Structure Of A Novel Diadenosine
5',5'''-P1,P4-Tetraphosphate Phosphorylase From
Mycobacterium Tuberculosis H37rv
pdb|3ANO|B Chain B, Crystal Structure Of A Novel Diadenosine
5',5'''-P1,P4-Tetraphosphate Phosphorylase From
Mycobacterium Tuberculosis H37rv
Length = 218
Score = 32.3 bits (72), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 37 CVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQGLDNGYRLV 96
A ++ P P H +V+P + + L + D ++ L A ++ K +G+ +
Sbjct: 93 VYAVLNLYPYNPGHLMVVPYRRVSELEDLTDLESAELMAFTQKAIRVIKNVSRPHGFNVG 152
Query: 97 VNNGRHGAQSVY-HLHIHVM 115
+N G S+ HLH+HV+
Sbjct: 153 LNLGTSAGGSLAEHLHVHVV 172
>pdb|1FHI|A Chain A, Substrate Analog (Ib2) Complex With The Fragile Histidine
Triad Protein, Fhit
pdb|4FIT|A Chain A, Fhit-Apo
pdb|6FIT|A Chain A, Fhit-Transition State Analog
Length = 147
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 2/98 (2%)
Query: 18 FGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLM 77
FG+ L K P + + A + P P H LV P +P+ + ++ L
Sbjct: 5 FGQHLIK--PSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTT 62
Query: 78 VTASKLAKKQGLDNGYRLVVNNGRHGAQSVYHLHIHVM 115
+ +K + +G Q+V H+H+HV+
Sbjct: 63 QRVGTVVEKHFHGTSLTFSMQDGPEAGQTVKHVHVHVL 100
>pdb|3FIT|A Chain A, Fhit (Fragile Histidine Triad Protein) In Complex With
AdenosineSULFATE AMP ANALOG
pdb|1FIT|A Chain A, Fhit (Fragile Histidine Triad Protein)
pdb|2FIT|A Chain A, Fhit (Fragile Histidine Triad Protein)
pdb|5FIT|A Chain A, Fhit-Substrate Analog
Length = 147
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 2/98 (2%)
Query: 18 FGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLM 77
FG+ L K P + + A + P P H LV P +P+ + ++ L
Sbjct: 5 FGQHLIK--PSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTT 62
Query: 78 VTASKLAKKQGLDNGYRLVVNNGRHGAQSVYHLHIHVM 115
+ +K +G Q+V H+H+HV+
Sbjct: 63 QRVGTVVEKHFHGTSLTFSXQDGPEAGQTVKHVHVHVL 100
>pdb|3PER|A Chain A, Crystal Structure Of Boxb With Phosphate Bound To The
Diiron Center
pdb|3PER|B Chain B, Crystal Structure Of Boxb With Phosphate Bound To The
Diiron Center
pdb|3PF7|A Chain A, Crystal Structure Of Boxb With Malonate Bound To The
Diiron Center
pdb|3PF7|B Chain B, Crystal Structure Of Boxb With Malonate Bound To The
Diiron Center
pdb|3PM5|A Chain A, Crystal Structure Of Boxb In Mixed Valent State With Bound
Benzoyl-Coa
pdb|3PM5|B Chain B, Crystal Structure Of Boxb In Mixed Valent State With Bound
Benzoyl-Coa
pdb|3PM5|C Chain C, Crystal Structure Of Boxb In Mixed Valent State With Bound
Benzoyl-Coa
pdb|3PM5|D Chain D, Crystal Structure Of Boxb In Mixed Valent State With Bound
Benzoyl-Coa
pdb|3Q1G|A Chain A, Crystal Structure Of Boxb Crystallized With Peg
pdb|3Q1G|B Chain B, Crystal Structure Of Boxb Crystallized With Peg
pdb|3Q1G|C Chain C, Crystal Structure Of Boxb Crystallized With Peg
pdb|3Q1G|D Chain D, Crystal Structure Of Boxb Crystallized With Peg
Length = 481
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 44/119 (36%), Gaps = 11/119 (9%)
Query: 4 VEKAAQAAPGGDTIFGRILRKEIPCNFI---HEDDKCVAF-----NDINPEAPIHFLVIP 55
+ A P G FG + + E +K + F D+ E P +
Sbjct: 50 LRTAVSVDPKGWADFGYVKMHDYRWGIFLAPQEGEKKITFGEHKGQDVWQEVPGEYRSTL 109
Query: 56 RKPIPSLSEAGDEDAEILGHLMVTASKLAKKQGLDNGYRLVVNNGRHGAQSVYHLHIHV 114
R+ I + + E HL +TA L L N +++ V GRH VY LH H
Sbjct: 110 RRIIVTQGDTEPASVEQQRHLGLTAPSLYD---LRNLFQVNVEEGRHLWAMVYLLHAHF 165
>pdb|3AOE|E Chain E, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|F Chain F, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|C Chain C, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|D Chain D, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
Length = 419
Score = 28.9 bits (63), Expect = 0.72, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 53 VIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQGLD-NGYRLVVNN-GRHGAQSVYH 109
V+ KP G +DA LG L+V + LAK++GLD G R+VV G+ GA H
Sbjct: 179 VVTGKPHALGGSEGRDDAAGLGALLVLEA-LAKRRGLDLRGARVVVQGLGQVGAAVALH 236
>pdb|2FHI|A Chain A, Substrate Analog (Ib2) Complex With The His 96 Asn
Substitution Of The Fragile Histidine Triad Protein,
Fhit
Length = 147
Score = 28.9 bits (63), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 39/98 (39%), Gaps = 2/98 (2%)
Query: 18 FGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLM 77
FG+ L K P + + A + P P H LV P +P+ + ++ L
Sbjct: 5 FGQHLIK--PSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTT 62
Query: 78 VTASKLAKKQGLDNGYRLVVNNGRHGAQSVYHLHIHVM 115
+ +K + +G Q+V H+++HV+
Sbjct: 63 QRVGTVVEKHFHGTSLTFSMQDGPEAGQTVKHVNVHVL 100
>pdb|3SPD|A Chain A, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna
pdb|3SPD|B Chain B, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna
pdb|3SPD|C Chain C, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna
pdb|3SPD|D Chain D, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna
pdb|3SPL|A Chain A, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna And Amp
pdb|3SPL|B Chain B, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna And Amp
pdb|3SPL|C Chain C, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna And Amp
pdb|3SPL|D Chain D, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna And Amp
Length = 204
Score = 28.9 bits (63), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 29 NFIHEDDKCVAFNDINPEAPIHFLVIPRKP 58
N I+ DD V D+ P++ +H L++ R P
Sbjct: 22 NVIYYDDDVVLVRDMFPKSKMHLLLMTRDP 51
>pdb|3SP4|A Chain A, Crystal Structure Of Aprataxin Ortholog Hnt3 From
Schizosaccharomyces Pombe
pdb|3SP4|B Chain B, Crystal Structure Of Aprataxin Ortholog Hnt3 From
Schizosaccharomyces Pombe
Length = 204
Score = 28.5 bits (62), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 29 NFIHEDDKCVAFNDINPEAPIHFLVIPRKP 58
N I+ DD V D+ P++ +H L++ R P
Sbjct: 22 NVIYYDDDVVLVRDMFPKSKMHLLLMTRDP 51
>pdb|3SZQ|A Chain A, Structure Of An S. Pombe AptxDNAAMPZN COMPLEX
Length = 206
Score = 28.5 bits (62), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 29 NFIHEDDKCVAFNDINPEAPIHFLVIPRKP 58
N I+ DD V D+ P++ +H L++ R P
Sbjct: 24 NVIYYDDDVVLVRDMFPKSKMHLLLMTRDP 53
>pdb|2KXI|A Chain A, Solution Nmr Structure Of The Apoform Of Nare (Nmb1343)
Length = 153
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 80 ASKLAKKQGLDNGYRLVVNNGRHGAQSVYHLHIH 113
A K A G++NGY V+N G S++ +
Sbjct: 78 AKKFATSSGIENGYIYVLNRDLFGQYSIFEYEVE 111
>pdb|3FI9|A Chain A, Crystal Structure Of Malate Dehydrogenase From
Porphyromonas Gingivalis
pdb|3FI9|B Chain B, Crystal Structure Of Malate Dehydrogenase From
Porphyromonas Gingivalis
Length = 343
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 85 KKQGLDNGYRLVVNNGRHGAQSVYHLHIHV----MGGRQLRWPPG 125
K++ + G ++ GR QS ++ I + MGG RWP G
Sbjct: 218 KQRVVKGGANIIKLRGRSSFQSPSYVSIEMIRAAMGGEAFRWPAG 262
>pdb|3VPX|A Chain A, Crystal Structure Of Leucine Dehydrogenase From A
Psychrophilic Bacterium Sporosarcina Psychrophila.
pdb|3VPX|B Chain B, Crystal Structure Of Leucine Dehydrogenase From A
Psychrophilic Bacterium Sporosarcina Psychrophila
Length = 364
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Query: 4 VEKAAQAAPGGDTIFGRILRKE-------IPCNFIHEDDKCVAFNDINPEA 47
++ AA+ A G D++ G+ + + C ++HE+ + DIN EA
Sbjct: 158 MKAAAKEAFGDDSLAGKTVAVQGVGNVAYALCEYLHEEGAKLIITDINEEA 208
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,118,649
Number of Sequences: 62578
Number of extensions: 156576
Number of successful extensions: 364
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 317
Number of HSP's gapped (non-prelim): 39
length of query: 125
length of database: 14,973,337
effective HSP length: 86
effective length of query: 39
effective length of database: 9,591,629
effective search space: 374073531
effective search space used: 374073531
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)