Query psy3327
Match_columns 125
No_of_seqs 137 out of 1119
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 22:07:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3327.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3327hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3275|consensus 100.0 3.1E-42 6.7E-47 219.3 12.3 125 1-125 2-127 (127)
2 PRK10687 purine nucleoside pho 100.0 1.1E-36 2.4E-41 199.7 12.0 108 14-121 3-111 (119)
3 cd01276 PKCI_related Protein K 100.0 4.2E-34 9.2E-39 183.1 12.2 103 15-117 1-104 (104)
4 COG0537 Hit Diadenosine tetrap 100.0 1.2E-33 2.6E-38 189.6 12.6 104 14-120 1-107 (138)
5 cd01277 HINT_subgroup HINT (hi 100.0 2.5E-32 5.3E-37 174.4 12.4 103 15-117 1-103 (103)
6 cd01275 FHIT FHIT (fragile his 100.0 1.8E-31 3.9E-36 176.5 12.7 104 16-119 1-105 (126)
7 cd01278 aprataxin_related apra 100.0 1.2E-28 2.7E-33 157.8 11.9 100 15-116 1-104 (104)
8 PF01230 HIT: HIT domain; Int 100.0 4.4E-29 9.4E-34 158.5 9.5 94 23-119 1-97 (98)
9 PRK11720 galactose-1-phosphate 99.9 8.6E-27 1.9E-31 176.6 10.9 114 12-125 192-315 (346)
10 TIGR00209 galT_1 galactose-1-p 99.9 3.9E-26 8.5E-31 173.0 11.2 107 12-118 192-303 (347)
11 cd00608 GalT Galactose-1-phosp 99.9 9E-26 2E-30 170.3 10.5 108 12-119 182-296 (329)
12 cd00468 HIT_like HIT family: H 99.9 3.2E-25 6.9E-30 137.0 9.7 83 31-116 1-86 (86)
13 PLN02643 ADP-glucose phosphory 99.9 3.8E-24 8.2E-29 161.7 10.5 104 12-119 196-304 (336)
14 PF11969 DcpS_C: Scavenger mRN 99.9 1.7E-24 3.7E-29 141.4 6.1 100 15-118 1-105 (116)
15 KOG3379|consensus 99.9 8.5E-23 1.8E-27 133.7 10.7 93 28-120 17-109 (150)
16 KOG4359|consensus 99.8 7.7E-19 1.7E-23 115.5 9.1 103 12-116 29-135 (166)
17 PF02744 GalP_UDP_tr_C: Galact 99.7 6.9E-17 1.5E-21 111.4 8.7 103 14-116 13-119 (166)
18 COG1085 GalT Galactose-1-phosp 99.6 8.1E-15 1.8E-19 110.0 8.1 102 12-116 183-291 (338)
19 PF04677 CwfJ_C_1: Protein sim 99.4 7.3E-12 1.6E-16 82.3 12.2 103 9-117 6-108 (121)
20 KOG2958|consensus 99.3 2.3E-12 4.9E-17 94.5 5.7 106 12-117 197-309 (354)
21 KOG0562|consensus 99.0 2.2E-10 4.7E-15 77.8 2.9 89 29-118 16-106 (184)
22 KOG2476|consensus 98.9 1.9E-08 4.1E-13 78.2 10.6 100 12-117 317-416 (528)
23 KOG3969|consensus 98.0 0.0001 2.2E-09 54.3 9.5 90 26-119 158-258 (310)
24 KOG2477|consensus 98.0 0.00011 2.3E-09 58.3 9.8 101 13-117 406-507 (628)
25 cd00608 GalT Galactose-1-phosp 97.9 0.00013 2.7E-09 55.5 8.8 64 50-116 95-161 (329)
26 PLN03103 GDP-L-galactose-hexos 97.9 8.1E-05 1.8E-09 57.7 7.7 72 34-116 168-241 (403)
27 COG1085 GalT Galactose-1-phosp 97.5 0.00083 1.8E-08 51.2 8.3 103 11-116 37-162 (338)
28 PLN02643 ADP-glucose phosphory 97.4 0.0023 5E-08 48.9 9.8 65 49-116 108-175 (336)
29 PRK11720 galactose-1-phosphate 97.2 0.0028 6E-08 48.7 8.6 65 49-116 106-171 (346)
30 TIGR00672 cdh CDP-diacylglycer 97.2 0.0031 6.8E-08 46.1 8.3 98 14-115 39-143 (250)
31 TIGR00209 galT_1 galactose-1-p 97.2 0.0039 8.5E-08 47.9 9.0 65 49-116 106-171 (347)
32 PRK05471 CDP-diacylglycerol py 97.1 0.005 1.1E-07 45.1 8.4 98 14-115 40-144 (252)
33 COG4360 APA2 ATP adenylyltrans 97.0 0.0012 2.7E-08 47.9 4.6 71 36-117 93-163 (298)
34 KOG2720|consensus 96.8 0.002 4.4E-08 49.0 4.2 73 33-115 165-237 (431)
35 PF02611 CDH: CDP-diacylglycer 96.5 0.015 3.3E-07 42.0 7.2 84 28-115 26-115 (222)
36 COG2134 Cdh CDP-diacylglycerol 96.3 0.048 1E-06 39.0 8.5 98 14-115 40-144 (252)
37 COG5075 Uncharacterized conser 96.1 0.016 3.5E-07 42.3 5.2 87 26-116 153-250 (305)
38 PF01087 GalP_UDP_transf: Gala 92.8 0.49 1.1E-05 33.0 6.0 64 50-116 112-178 (183)
39 KOG2958|consensus 90.0 1.6 3.6E-05 33.0 6.6 106 7-115 45-175 (354)
40 PF14317 YcxB: YcxB-like prote 83.0 3.1 6.7E-05 22.8 3.9 27 29-59 23-49 (62)
41 PF01076 Mob_Pre: Plasmid reco 77.9 11 0.00024 26.5 6.1 34 82-119 110-143 (196)
42 PF03432 Relaxase: Relaxase/Mo 77.1 6.6 0.00014 27.9 4.9 36 75-116 73-109 (242)
43 PRK13878 conjugal transfer rel 64.1 12 0.00025 32.0 4.1 36 75-116 85-121 (746)
44 cd01617 DCX Ubiquitin-like dom 51.4 22 0.00048 21.2 2.9 28 36-63 2-29 (80)
45 PF00446 GnRH: Gonadotropin-re 47.3 12 0.00026 13.6 0.8 7 119-125 4-10 (10)
46 PF01446 Rep_1: Replication pr 47.2 90 0.002 22.7 6.0 10 106-115 78-87 (233)
47 TIGR03793 TOMM_pelo TOMM prope 47.0 27 0.00059 21.0 2.7 20 48-70 52-71 (77)
48 PF01868 UPF0086: Domain of un 46.2 43 0.00094 20.5 3.7 29 28-60 32-60 (89)
49 PRK03879 ribonuclease P protei 45.3 44 0.00095 20.9 3.6 33 28-65 33-65 (96)
50 smart00538 POP4 A domain found 45.1 42 0.00092 20.8 3.5 35 28-66 31-65 (92)
51 PF00552 IN_DBD_C: Integrase D 43.8 41 0.0009 18.8 3.0 31 27-60 21-51 (55)
52 smart00537 DCX Domain in the D 43.8 21 0.00045 21.8 2.0 29 36-64 7-35 (89)
53 PF14394 DUF4423: Domain of un 42.1 63 0.0014 22.3 4.3 52 55-116 118-170 (171)
54 PF04134 DUF393: Protein of un 39.4 10 0.00022 23.8 0.1 11 12-22 3-13 (114)
55 PRK09458 pspB phage shock prot 36.4 71 0.0015 19.2 3.3 25 63-87 34-58 (75)
56 PF02729 OTCace_N: Aspartate/o 35.0 45 0.00097 22.2 2.7 27 57-86 1-27 (142)
57 COG1588 POP4 RNase P/RNase MRP 33.2 81 0.0018 19.8 3.3 34 28-66 35-68 (95)
58 PF15632 ATPgrasp_Ter: ATP-gra 33.1 1.9E+02 0.004 22.3 6.0 63 48-119 219-282 (329)
59 PF06667 PspB: Phage shock pro 32.8 91 0.002 18.6 3.4 25 63-87 34-58 (75)
60 PHA03073 late transcription fa 31.9 36 0.00077 23.0 1.7 10 12-21 48-57 (150)
61 PF15055 DUF4536: Domain of un 31.7 20 0.00043 19.5 0.4 10 15-24 1-10 (47)
62 COG2928 Uncharacterized conser 31.2 66 0.0014 23.4 3.1 35 34-69 152-187 (222)
63 PF05840 Phage_GPA: Bacterioph 30.6 2.7E+02 0.0058 21.9 7.5 79 33-115 176-256 (371)
64 PTZ00255 60S ribosomal protein 28.9 32 0.0007 21.4 1.1 17 2-20 27-43 (90)
65 KOG2270|consensus 28.4 1.3E+02 0.0028 24.3 4.5 74 40-113 228-318 (520)
66 cd00165 S4 S4/Hsp/ tRNA synthe 27.6 48 0.001 17.8 1.6 12 29-40 58-69 (70)
67 PRK03976 rpl37ae 50S ribosomal 27.5 34 0.00074 21.3 1.0 17 2-20 27-43 (90)
68 COG4997 Uncharacterized conser 27.3 84 0.0018 19.4 2.6 23 67-89 51-73 (95)
69 PRK05270 galactose-1-phosphate 27.1 3.3E+02 0.0071 22.4 6.6 73 4-81 160-246 (493)
70 COG2108 Uncharacterized conser 26.7 37 0.00079 26.3 1.2 24 13-36 39-62 (353)
71 PF09830 ATP_transf: ATP adeny 26.7 49 0.0011 18.8 1.5 15 47-61 7-21 (62)
72 TIGR00280 L37a ribosomal prote 26.5 36 0.00079 21.2 1.0 16 3-20 27-42 (91)
73 TIGR01239 galT_2 galactose-1-p 25.5 3.2E+02 0.007 22.4 6.3 58 3-60 156-227 (489)
74 PRK13863 type IV secretion sys 25.1 1.8E+02 0.004 23.3 4.8 37 75-117 97-139 (446)
75 PF04270 Strep_his_triad: Stre 24.9 1.4E+02 0.003 16.6 5.0 33 28-71 12-44 (53)
76 TIGR01827 gatC_rel Asp-tRNA(As 24.0 41 0.00088 20.0 0.9 22 39-60 51-72 (73)
77 COG4759 Uncharacterized protei 22.6 77 0.0017 24.2 2.2 10 14-23 1-10 (316)
78 TIGR02147 Fsuc_second hypothet 22.5 2.1E+02 0.0045 21.4 4.6 51 56-117 217-269 (271)
79 TIGR02976 phageshock_pspB phag 21.3 1.8E+02 0.004 17.3 3.3 24 64-87 35-58 (75)
80 PF05199 GMC_oxred_C: GMC oxid 20.3 1.7E+02 0.0036 18.6 3.4 43 45-87 1-48 (144)
81 TIGR01363 strep_his_triad stre 20.1 31 0.00068 26.4 -0.2 18 103-120 202-220 (348)
No 1
>KOG3275|consensus
Probab=100.00 E-value=3.1e-42 Score=219.28 Aligned_cols=125 Identities=62% Similarity=1.087 Sum_probs=118.8
Q ss_pred CchHhhhhccCCC-CCCccccccccccCccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHHH
Q psy3327 1 MSEVEKAAQAAPG-GDTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVT 79 (125)
Q Consensus 1 ~~~~~~~~~~~~~-~~C~fC~i~~~e~~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~ 79 (125)
+||+++++++.+. .+|.||+|+++|+|+.+||||+.++||.|..|.+|+|+|||||+|++.+..+.+.+.++|+.++.+
T Consensus 2 ~~e~~~a~~a~~~~~~tIF~kIi~keIPa~ii~Edd~~lAF~Di~Pqap~HfLvIPK~hi~~~s~aed~~~e~Lg~ll~~ 81 (127)
T KOG3275|consen 2 ASEVEKAQTAAAGAAPTIFCKIIRKEIPAKIIFEDDRCLAFHDIAPQAPGHFLVIPKKHITQLSKAEDRDDELLGHLLPV 81 (127)
T ss_pred cchHHHHhhhcccCCCcEeeeeecccCCcceEeeccceEEEEecCCCCCceEEEeecccccchhhcccCCHHHHHHHHHH
Confidence 6899999988665 899999999999999999999999999999999999999999999888887777777899999999
Q ss_pred HHHHHHHcCCCCCeEEEEecCcCCCCccceeEEEEecCCCCCCCCC
Q psy3327 80 ASKLAKKQGLDNGYRLVVNNGRHGAQSVYHLHIHVMGGRQLRWPPG 125 (125)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~g~~~~~~v~HlH~HviPr~~~~w~~~ 125 (125)
++++++++|+.+|||+.+|+|..+.|+|+|+|+||+|+++++||||
T Consensus 82 ~k~vak~~Gl~~gYrvv~NnG~~g~QsV~HvH~HvlgGrqm~WPpg 127 (127)
T KOG3275|consen 82 AKKVAKALGLEDGYRVVQNNGKDGHQSVYHVHLHVLGGRQMQWPPG 127 (127)
T ss_pred HHHHHHHhCcccceeEEEcCCcccceEEEEEEEEEeCCcccCCCCC
Confidence 9999999999899999999999999999999999999999999998
No 2
>PRK10687 purine nucleoside phosphoramidase; Provisional
Probab=100.00 E-value=1.1e-36 Score=199.68 Aligned_cols=108 Identities=44% Similarity=0.933 Sum_probs=100.7
Q ss_pred CCCccccccccccCccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHcCC-CCC
Q psy3327 14 GDTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQGL-DNG 92 (125)
Q Consensus 14 ~~C~fC~i~~~e~~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~~-~~~ 92 (125)
++|+||+|++|+.++.+||||+.+++|+|.+|.++||+|||||+|+.++.+|+++++.++.+++..++++++..+. +++
T Consensus 3 ~~CiFC~I~~g~~p~~~v~edd~~~aflD~~P~~~GH~LViPK~H~~~l~dl~~~~~~~l~~l~~~~~~~~~~~~~~~~g 82 (119)
T PRK10687 3 EETIFSKIIRREIPSDIVYQDELVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQALGRMITVAAKIAEQEGIAEDG 82 (119)
T ss_pred CCCchhhhhcCCCCCCEEEECCCEEEEEcCCCCCCccEEEEehhHhCChhHCChHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 4699999999999999999999999999999999999999999999999999999999999999988888876543 589
Q ss_pred eEEEEecCcCCCCccceeEEEEecCCCCC
Q psy3327 93 YRLVVNNGRHGAQSVYHLHIHVMGGRQLR 121 (125)
Q Consensus 93 ~~~~~~~g~~~~~~v~HlH~HviPr~~~~ 121 (125)
||+++|+|+.+||+|+|+|+|||||++++
T Consensus 83 ~~l~~n~G~~agQ~V~HlHiHvI~g~~~~ 111 (119)
T PRK10687 83 YRLIMNTNRHGGQEVYHIHMHLLGGRPLG 111 (119)
T ss_pred eEEEEeCCCcCCcccCEEEEEECCCcccC
Confidence 99999999999999999999999998864
No 3
>cd01276 PKCI_related Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.
Probab=100.00 E-value=4.2e-34 Score=183.13 Aligned_cols=103 Identities=56% Similarity=1.033 Sum_probs=98.1
Q ss_pred CCccccccccccCccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHcCC-CCCe
Q psy3327 15 DTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQGL-DNGY 93 (125)
Q Consensus 15 ~C~fC~i~~~e~~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~~-~~~~ 93 (125)
+|+||++++++.+.++|||++.+++|.|.+|.++||+||+||+|++++.+|+++|..++.+++..++++.+.++. +++|
T Consensus 1 ~C~fc~i~~~e~~~~iv~e~~~~~a~~~~~p~~~gh~lIiPk~H~~~~~dl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 80 (104)
T cd01276 1 DCIFCKIIRGEIPAKKVYEDDEVLAFHDINPQAPVHILVIPKKHIASLSDATEEDEELLGHLLSAAAKVAKDLGIAEDGY 80 (104)
T ss_pred CCcceecccCCCccCEEEECCCEEEEECCCCCCCCEEEEEecceeCChHHcccccHHHHHHHHHHHHHHHHHhCCCCCCE
Confidence 599999999998889999999999999999999999999999999999999999999999999999999999874 5799
Q ss_pred EEEEecCcCCCCccceeEEEEecC
Q psy3327 94 RLVVNNGRHGAQSVYHLHIHVMGG 117 (125)
Q Consensus 94 ~~~~~~g~~~~~~v~HlH~HviPr 117 (125)
|+++|+|+.+|++++|+|+|||+|
T Consensus 81 n~~~~~g~~~g~~v~H~HiHii~~ 104 (104)
T cd01276 81 RLVINCGKDGGQEVFHLHLHLLGG 104 (104)
T ss_pred EEEEeCCCCCCCceeEEEEEEeCC
Confidence 999999999999999999999986
No 4
>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]
Probab=100.00 E-value=1.2e-33 Score=189.62 Aligned_cols=104 Identities=39% Similarity=0.638 Sum_probs=91.7
Q ss_pred CCCccccccccccCccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHcC---CC
Q psy3327 14 GDTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQG---LD 90 (125)
Q Consensus 14 ~~C~fC~i~~~e~~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~---~~ 90 (125)
+.|.||++++++.++.+||||+++++|+|.+|.++||+|||||+|++++.+++++++. +++..+++++++++ .+
T Consensus 1 ~~ciFc~ii~~e~~~~~Vye~~~~~afld~~P~~~gH~LviPk~h~~~l~~l~~~~~~---~l~~~~~~ia~al~~~~~~ 77 (138)
T COG0537 1 MMCIFCKIIRGEIPANKVYEDEHVLAFLDIYPAAPGHTLVIPKRHVSDLEDLDPEELA---ELFLLAQKIAKALKEAFGA 77 (138)
T ss_pred CCceeeeeecCCCCceEEEeCCCEEEEecCCCCCCCeEEEEeccchhhhhhCCHHHHH---HHHHHHHHHHHHHHHHhCC
Confidence 3699999999999999999999999999999999999999999999999999998754 45555555555542 26
Q ss_pred CCeEEEEecCcCCCCccceeEEEEecCCCC
Q psy3327 91 NGYRLVVNNGRHGAQSVYHLHIHVMGGRQL 120 (125)
Q Consensus 91 ~~~~~~~~~g~~~~~~v~HlH~HviPr~~~ 120 (125)
+|||+++|+|..+||+|+|+|+|||||+..
T Consensus 78 ~g~ni~~N~g~~agq~V~HlH~HvIPr~~~ 107 (138)
T COG0537 78 DGYNIGINNGKAAGQEVFHLHIHIIPRYKG 107 (138)
T ss_pred CceEEEEecCcccCcCcceEEEEEcCCcCC
Confidence 899999999999999999999999999873
No 5
>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides. This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression.
Probab=100.00 E-value=2.5e-32 Score=174.41 Aligned_cols=103 Identities=37% Similarity=0.537 Sum_probs=90.4
Q ss_pred CCccccccccccCccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHcCCCCCeE
Q psy3327 15 DTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQGLDNGYR 94 (125)
Q Consensus 15 ~C~fC~i~~~e~~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~~~~~~~ 94 (125)
+|+||++++++.+..+|+|+++|+|+.+.+|..+||++|+||+|++++.+|+++|+..+.+++..+.+.+++...+++||
T Consensus 1 ~C~~c~ii~~e~~~~iv~e~~~~~a~~~~~~~~pg~~lI~Pk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~n 80 (103)
T cd01277 1 DCIFCKIIAGEIPSYKVYEDDHVLAFLDINPASKGHTLVIPKKHYENLLDLDPEELAELILAAKKVARALKKALKADGLN 80 (103)
T ss_pred CCccccccCCCCCCCEEEeCCCEEEEECCCCCCCeeEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCceE
Confidence 59999999999888899999999999999999999999999999999999999987777777664444444332357999
Q ss_pred EEEecCcCCCCccceeEEEEecC
Q psy3327 95 LVVNNGRHGAQSVYHLHIHVMGG 117 (125)
Q Consensus 95 ~~~~~g~~~~~~v~HlH~HviPr 117 (125)
+.+|.|+..|++++|+|+|||||
T Consensus 81 ~~~~~~~~~g~~~~H~HiHiiPR 103 (103)
T cd01277 81 ILQNNGRAAGQVVFHVHVHVIPR 103 (103)
T ss_pred EEEeCCcccCcccCEEEEEEccC
Confidence 99999998999999999999998
No 6
>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours.
Probab=99.98 E-value=1.8e-31 Score=176.52 Aligned_cols=104 Identities=26% Similarity=0.356 Sum_probs=92.0
Q ss_pred CccccccccccC-ccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHcCCCCCeE
Q psy3327 16 TIFGRILRKEIP-CNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQGLDNGYR 94 (125)
Q Consensus 16 C~fC~i~~~e~~-~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~~~~~~~ 94 (125)
|+||++++++.+ +++|+|++.++++++.+|.++||+||+||+|++++.+|+++|+..+.+++..+.+.+++...+++||
T Consensus 1 C~fC~i~~~e~~~~~iv~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~~~~~v~~~l~~~~~~~~~n 80 (126)
T cd01275 1 CVFCDIPIKPDEDNLVFYRTKHSFAVVNLYPYNPGHVLVVPYRHVPRLEDLTPEEIADLFKLVQLAMKALKVVYKPDGFN 80 (126)
T ss_pred CccccCccCCCccccEEEeCCCEEEEEcCCCCCCCcEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCceE
Confidence 999999999876 6899999999999999999999999999999999999999998777777765445555443357999
Q ss_pred EEEecCcCCCCccceeEEEEecCCC
Q psy3327 95 LVVNNGRHGAQSVYHLHIHVMGGRQ 119 (125)
Q Consensus 95 ~~~~~g~~~~~~v~HlH~HviPr~~ 119 (125)
+.+|+|+.+||+++|+|+|||||..
T Consensus 81 ~~~~~g~~~gq~v~H~HiHiiPR~~ 105 (126)
T cd01275 81 IGINDGKAGGGIVPHVHIHIVPRWN 105 (126)
T ss_pred EEEeCCcccCCCcCEEEEEEeCCcC
Confidence 9999999889999999999999964
No 7
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome. All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.
Probab=99.96 E-value=1.2e-28 Score=157.84 Aligned_cols=100 Identities=32% Similarity=0.507 Sum_probs=88.5
Q ss_pred CCcccccccccc--CccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHc-CC-C
Q psy3327 15 DTIFGRILRKEI--PCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQ-GL-D 90 (125)
Q Consensus 15 ~C~fC~i~~~e~--~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~-~~-~ 90 (125)
.|+||++++++. +.++|+|++.++++.|.+|.++||+||+||+|+.++.+|+++++.+++++++.+.+.++.. +. +
T Consensus 1 ~c~fc~i~~~e~~~~~~iv~~~~~~~a~~~~~p~~~~h~lIiPk~h~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~ 80 (104)
T cd01278 1 LCHFCDIAKRRDPDPEDQVYEDDRVVVFKDIYPKARHHYLVIPKEHIASLKALTKEDVPLLEHMETVGREKLLRSDNTDP 80 (104)
T ss_pred CCccccCccCCCCCCccEEEeCCCEEEEECCCCCCCceEEEEecCCCCChHHCCHhHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 499999999886 4699999999999999999999999999999999999999999999999998777744442 32 4
Q ss_pred CCeEEEEecCcCCCCccceeEEEEec
Q psy3327 91 NGYRLVVNNGRHGAQSVYHLHIHVMG 116 (125)
Q Consensus 91 ~~~~~~~~~g~~~~~~v~HlH~HviP 116 (125)
++||++++.|+. |+++|+|+|||.
T Consensus 81 ~~~n~g~h~~p~--~~v~H~H~Hvi~ 104 (104)
T cd01278 81 SEFRFGFHAPPF--TSVSHLHLHVIA 104 (104)
T ss_pred cCeEEEeCCCCC--cCeeeEEEEeeC
Confidence 799999999885 899999999984
No 8
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms []. Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologues, which are found in all forms of life, are structurally related to Fhit homologues and GalT-related enzymes, which have more restricted phylogenetic profiles []. Hint homologues including rabbit Hint and yeast Hnt1 hydrolyse adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo []. Fhit homologues are diadenosine polyphosphate hydrolases [] and function as tumour suppressors in human and mouse [] though the tumour suppressing function of Fhit does not depend on ApppA hydrolysis []. The third branch of the HIT superfamily, which includes GalT homologues, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moieties to phosphorylated second substrates rather than hydrolysing them [].; PDB: 3LB5_B 1EMS_A 1Y23_A 3ANO_B 1KPE_B 1KPC_A 4EQE_B 1KPA_A 1KPB_B 4EQG_B ....
Probab=99.96 E-value=4.4e-29 Score=158.46 Aligned_cols=94 Identities=44% Similarity=0.645 Sum_probs=78.4
Q ss_pred ccccCccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHcC---CCCCeEEEEec
Q psy3327 23 RKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQG---LDNGYRLVVNN 99 (125)
Q Consensus 23 ~~e~~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~---~~~~~~~~~~~ 99 (125)
++|.++.+||||+.++|+++.+|.++||+||+||+|++++.+|+++++..+..+. +++.+.++ .+++||+.+|+
T Consensus 1 ~~e~~~~vv~e~~~~~~~~~~~p~~~gh~LVipk~H~~~l~dl~~~~~~~l~~~~---~~v~~~l~~~~~~~~~~~~~~~ 77 (98)
T PF01230_consen 1 RGEIPARVVYEDDHFVAFLDIFPISPGHLLVIPKRHVESLSDLPPEERAELMQLV---QKVAKALKEAFGPDGYNVIINN 77 (98)
T ss_dssp TTSSHCEEEEE-SSEEEEEESSTSSTTEEEEEESSTGSSGGGSHHHHHHHHHHHH---HHHHHHHHHHHTTSEEEEEEEE
T ss_pred CCCCCeeEEEECCCEEEEEcCCCCCCeEEEEEecccccchhcCCHHHHHHHHHHH---HHHHHHHhcccccceeeccccc
Confidence 3678889999999999999999999999999999999999999988765554444 44444432 25799999999
Q ss_pred CcCCCCccceeEEEEecCCC
Q psy3327 100 GRHGAQSVYHLHIHVMGGRQ 119 (125)
Q Consensus 100 g~~~~~~v~HlH~HviPr~~ 119 (125)
|+.+||+++|+|+|||||++
T Consensus 78 g~~~gq~v~HlH~HviPR~~ 97 (98)
T PF01230_consen 78 GPAAGQSVPHLHFHVIPRYK 97 (98)
T ss_dssp SGGGTSSSSS-EEEEEEEST
T ss_pred hhhhcCccCEEEEEEecccC
Confidence 99999999999999999985
No 9
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=99.94 E-value=8.6e-27 Score=176.56 Aligned_cols=114 Identities=14% Similarity=0.217 Sum_probs=93.5
Q ss_pred CCCCCccccccccccC--ccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHH-HHHHHHHHcC
Q psy3327 12 PGGDTIFGRILRKEIP--CNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMV-TASKLAKKQG 88 (125)
Q Consensus 12 ~~~~C~fC~i~~~e~~--~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~-~~~~~~~~~~ 88 (125)
..+.|+||+|+++|.+ .++|+|+++|+||.|.+|.++||+||+||+|+.++.+|+++++..|+++++ +++++-+.++
T Consensus 192 ~~g~Clfcdii~~E~~~~~RiV~End~fvAf~p~~p~~P~h~lIiPKrH~~~~~dl~dee~~~La~~lk~v~~~l~~~~~ 271 (346)
T PRK11720 192 EHGSPLLVDYVQRELADGERIVVETEHWLAVVPYWAAWPFETLLLPKAHVLRLTDLTDAQRDDLALALKKLTSRYDNLFQ 271 (346)
T ss_pred HcCCeEHHHHHHhhhhcCCeEEEECCCEEEEeccccCCCCeEEEecccCCCChhhCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4688999999999976 489999999999999999999999999999999999999998777766665 3344434444
Q ss_pred CCCCeEEEEecCcCCC--CccceeEEEEecCC-----CCCCCCC
Q psy3327 89 LDNGYRLVVNNGRHGA--QSVYHLHIHVMGGR-----QLRWPPG 125 (125)
Q Consensus 89 ~~~~~~~~~~~g~~~~--~~v~HlH~HviPr~-----~~~w~~~ 125 (125)
...+||+++|.++..+ +.++|+|+||+||. +++|.+|
T Consensus 272 ~~~pyn~~~h~~p~~~~~~~~~H~HihiiPrl~Rs~~~~k~~aG 315 (346)
T PRK11720 272 CSFPYSMGWHGAPFNGEENDHWQLHAHFYPPLLRSATVRKFMVG 315 (346)
T ss_pred CCCCCceeEEecccCCCCCeeEEEEEEEeCCccCccccccceee
Confidence 4457999999998654 57899999999993 3566554
No 10
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=99.94 E-value=3.9e-26 Score=173.03 Aligned_cols=107 Identities=13% Similarity=0.193 Sum_probs=89.3
Q ss_pred CCCCCcccccccccc--CccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHH-HHHHHHHHcC
Q psy3327 12 PGGDTIFGRILRKEI--PCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMV-TASKLAKKQG 88 (125)
Q Consensus 12 ~~~~C~fC~i~~~e~--~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~-~~~~~~~~~~ 88 (125)
.++.|+||+++++|. +.++|+|+++|+||.|.+|.++||+||+||+|+.++.+|+++++..|+++++ +++++.+.++
T Consensus 192 ~~g~clfcdIi~~E~~~~~riV~End~fvAf~p~~p~~Pgh~lIiPKrH~~~~~dl~d~e~~~La~~lk~v~~~l~~~~~ 271 (347)
T TIGR00209 192 EHKSPMLVDYVKRELADKSRTVVETEHWIAVVPYWAIWPFETLLLPKAHVLRITDLTDAQRSDLALILKKLTSKYDNLFE 271 (347)
T ss_pred HcCCccHHHHHHhHhhcCCeEEEECCCEEEEeccCCCCCCeEEEeeccCCCChhhCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 468899999999986 3699999999999999999999999999999999999999998777777665 3334434444
Q ss_pred CCCCeEEEEecCcCCCC--ccceeEEEEecCC
Q psy3327 89 LDNGYRLVVNNGRHGAQ--SVYHLHIHVMGGR 118 (125)
Q Consensus 89 ~~~~~~~~~~~g~~~~~--~v~HlH~HviPr~ 118 (125)
...+||++++.++..|+ ..+|+|+||+||.
T Consensus 272 ~~~pYn~~~h~~p~~~~~~~~~H~HihiiPrl 303 (347)
T TIGR00209 272 TSFPYSMGWHGAPFNGEENQHWQLHAHFYPPL 303 (347)
T ss_pred CCCCcceeEEecccCCCCCcEEEEEEEEeCCc
Confidence 43489999999987765 5567999999994
No 11
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=99.93 E-value=9e-26 Score=170.32 Aligned_cols=108 Identities=17% Similarity=0.299 Sum_probs=92.2
Q ss_pred CCCCCccccccccccC--ccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHH-HHHHHHHHcC
Q psy3327 12 PGGDTIFGRILRKEIP--CNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMV-TASKLAKKQG 88 (125)
Q Consensus 12 ~~~~C~fC~i~~~e~~--~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~-~~~~~~~~~~ 88 (125)
..+.|+||+++++|.+ .++|+||++|++|.+.+|..|||++|+||+|+.++.+|++++...|++++. +++++.+.++
T Consensus 182 ~~g~clfcdii~~E~~~~~riV~end~~va~~p~~~~~P~e~lIiPKrH~~~~~dl~~~e~~~La~~l~~v~~~l~~~~~ 261 (329)
T cd00608 182 KHGRCLLCDYLKLELESKERIVVENEHFVAVVPFWARWPFEVHILPKRHVSRFTDLTDEEREDLAEILKRLLARYDNLFN 261 (329)
T ss_pred HcCCccHHHHHHhhhhcCCeEEEeCCCEEEEEecCCCCCcEEEEecCCCcCChhHCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4588999999999876 699999999999999999999999999999999999999999877777776 3334444445
Q ss_pred CCCCeEEEEecCcCC----CCccceeEEEEecCCC
Q psy3327 89 LDNGYRLVVNNGRHG----AQSVYHLHIHVMGGRQ 119 (125)
Q Consensus 89 ~~~~~~~~~~~g~~~----~~~v~HlH~HviPr~~ 119 (125)
...+||++++.++.. ++.++|+|+|++||+.
T Consensus 262 ~~~pyn~~~h~~P~~~~~~~~~~~H~Hihi~Pr~~ 296 (329)
T cd00608 262 CSFPYSMGWHQAPTGGKELENWYYHWHFEIPPRRS 296 (329)
T ss_pred CCCCeEEEEeccCCCCCcCCcceEEEEEEeCCCcC
Confidence 346899999998865 4689999999999954
No 12
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.
Probab=99.93 E-value=3.2e-25 Score=137.02 Aligned_cols=83 Identities=31% Similarity=0.550 Sum_probs=71.1
Q ss_pred EEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHc---CCCCCeEEEEecCcCCCCcc
Q psy3327 31 IHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQ---GLDNGYRLVVNNGRHGAQSV 107 (125)
Q Consensus 31 i~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~~v 107 (125)
+|||+.++||.|.+|.++||+||+||+|+.++.+|+++++.. +..+++++.+++ ...++||+.+|+|+.+||++
T Consensus 1 ~~e~~~~~a~~~~~p~~~gh~lIipk~H~~~~~~l~~~~~~~---l~~~~~~~~~~l~~~~~~~~~~~~~n~g~~~g~~v 77 (86)
T cd00468 1 VPDDEHSFAFVNLKPAAPGHVLVCPKRHVETLPDLDEALLAD---LVITAQRVAAELEKHGNVPSLTVFVNDGAAAGQSV 77 (86)
T ss_pred CeecCcEEEEECCCCCCCCcEEEeCchhhCChhHCCHHHHHH---HHHHHHHHHHHHHHhcCCCceEEEEcCCccCCCcC
Confidence 689999999999999999999999999999999999887554 444444555544 22479999999999999999
Q ss_pred ceeEEEEec
Q psy3327 108 YHLHIHVMG 116 (125)
Q Consensus 108 ~HlH~HviP 116 (125)
+|+|+||||
T Consensus 78 ~H~H~hiiP 86 (86)
T cd00468 78 PHVHLHVLP 86 (86)
T ss_pred CEEEEEeCC
Confidence 999999998
No 13
>PLN02643 ADP-glucose phosphorylase
Probab=99.91 E-value=3.8e-24 Score=161.73 Aligned_cols=104 Identities=19% Similarity=0.362 Sum_probs=86.9
Q ss_pred CCCCCccccccccccCccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHH-HHHHHHHHcCCC
Q psy3327 12 PGGDTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMV-TASKLAKKQGLD 90 (125)
Q Consensus 12 ~~~~C~fC~i~~~e~~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~-~~~~~~~~~~~~ 90 (125)
..+.|+||+++++|. +|+|+++|+||.+.+|.++||++|+||+|+.++.+|+++|+..|+++++ +++++.+.++.
T Consensus 196 ~~g~Clfcdii~~E~---iV~en~~f~Af~p~ap~~P~evlIiPKrH~~~~~dl~~~e~~~La~ilk~v~~~l~~~~~~- 271 (336)
T PLN02643 196 KTGKCSLCEVVKKDL---LIDESSHFVSIAPFAATFPFEIWIIPRDHSSNFHEIDDDKAVDLGGLLKLMLQKISKQLND- 271 (336)
T ss_pred HhCCCcHHHHHhCcc---EEEeCCCEEEEeccccCCCCEEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCC-
Confidence 468899999999887 9999999999999999999999999999999999999999887777766 44455454554
Q ss_pred CCeEEEEecCcCC--CC--ccceeEEEEecCCC
Q psy3327 91 NGYRLVVNNGRHG--AQ--SVYHLHIHVMGGRQ 119 (125)
Q Consensus 91 ~~~~~~~~~g~~~--~~--~v~HlH~HviPr~~ 119 (125)
.+||+++++|+.. ++ ...|+|+||+||..
T Consensus 272 ~pyN~~~~~~P~~~~~~~~~~~H~hihi~PRl~ 304 (336)
T PLN02643 272 PPYNYMIQTSPLGVEESNLPYTHWFLQIVPQLS 304 (336)
T ss_pred CCceeeeecCCCccccCcccceEEEEEEecCcC
Confidence 4899999999863 44 34566679999953
No 14
>PF11969 DcpS_C: Scavenger mRNA decapping enzyme C-term binding; PDB: 1VLR_B 1XMM_D 1XML_B 1ST0_A 3BLA_B 3BL9_B 3BL7_B 1ST4_B 1XQU_B.
Probab=99.91 E-value=1.7e-24 Score=141.44 Aligned_cols=100 Identities=39% Similarity=0.602 Sum_probs=82.9
Q ss_pred CCccccccccccCccEEEEcCeEEEEecCCCCCCceEEEEecC-CcCCCCCCChhhHHHHHHHHHHHHHHHHHcCC----
Q psy3327 15 DTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRK-PIPSLSEAGDEDAEILGHLMVTASKLAKKQGL---- 89 (125)
Q Consensus 15 ~C~fC~i~~~e~~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~-H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~~---- 89 (125)
.|.||.+.+++.+..++|||+.+++|.|.+|.++.|+|||||+ |+.++.+|+.++.++|.+|...++++++..+.
T Consensus 1 ~cif~~i~~~~~~~~vly~d~~~v~~~D~~P~a~~H~LviPk~~~i~sl~~L~~~~~~lL~~m~~~~~~~~~~~~~~~~~ 80 (116)
T PF11969_consen 1 NCIFCIIIRGEEPERVLYEDDDFVVFKDIYPKAPVHLLVIPKDPHIRSLRDLTPEHLPLLERMREVARELLKEEYPGDLD 80 (116)
T ss_dssp HHHHHHHTTSSSGGGESEEETSEEEEE-TT-SCCEEEEEEESSSS-SSGGG--GGGHHHHHHHHHHHHHHHHHHH-TT-E
T ss_pred CccceEeEcCCCCCcEEEEeCCEEEeeCCCCCcCcEEEEEeecCCCCChHHcCHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 4999999999999999999999999999999999999999999 99999999999999999999999999988642
Q ss_pred CCCeEEEEecCcCCCCccceeEEEEecCC
Q psy3327 90 DNGYRLVVNNGRHGAQSVYHLHIHVMGGR 118 (125)
Q Consensus 90 ~~~~~~~~~~g~~~~~~v~HlH~HviPr~ 118 (125)
...++++++. .+|++|+|+|+|...
T Consensus 81 ~~~~~~gfH~----~PS~~HLHlHvi~~~ 105 (116)
T PF11969_consen 81 SDDIRLGFHY----PPSVYHLHLHVISPD 105 (116)
T ss_dssp GGGEEEEEES----S-SSSS-EEEEEETT
T ss_pred hhhhcccccC----CCCcceEEEEEccCC
Confidence 2467777664 459999999999854
No 15
>KOG3379|consensus
Probab=99.89 E-value=8.5e-23 Score=133.71 Aligned_cols=93 Identities=19% Similarity=0.359 Sum_probs=81.5
Q ss_pred ccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHcCCCCCeEEEEecCcCCCCcc
Q psy3327 28 CNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQGLDNGYRLVVNNGRHGAQSV 107 (125)
Q Consensus 28 ~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v 107 (125)
+.++|++++.+||.+..|..|||+||+|+|-+.++.||+.+|..+|-...+.+.++++.....+++++.+..|+.+||+|
T Consensus 17 ~~VFykT~~sfafvNlkPvvpgHVLv~P~R~vpRl~dLt~~E~aDlF~t~~~v~~~lek~~~~ts~ti~iQDG~~AGQTV 96 (150)
T KOG3379|consen 17 DHVFYKTKHSFAFVNLKPVVPGHVLVSPLRVVPRLTDLTAAETADLFTTVQKVQRVLEKHYNATSLTIAIQDGPEAGQTV 96 (150)
T ss_pred ceEEEeccceEEEEeccccccceEEEeccccccccccCCcHHHHHHHHHHHHHHHHHHHHhcccceEEEeccccccCccc
Confidence 68999999999999999999999999999999999999999866655555556666666555578999999999999999
Q ss_pred ceeEEEEecCCCC
Q psy3327 108 YHLHIHVMGGRQL 120 (125)
Q Consensus 108 ~HlH~HviPr~~~ 120 (125)
+|+|+||+||+.-
T Consensus 97 pHvHvHIlPR~~g 109 (150)
T KOG3379|consen 97 PHVHVHILPRKAG 109 (150)
T ss_pred ceeEEEEcccccc
Confidence 9999999999653
No 16
>KOG4359|consensus
Probab=99.79 E-value=7.7e-19 Score=115.55 Aligned_cols=103 Identities=25% Similarity=0.450 Sum_probs=88.5
Q ss_pred CCCCCccccccccccC--ccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHcCC
Q psy3327 12 PGGDTIFGRILRKEIP--CNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQGL 89 (125)
Q Consensus 12 ~~~~C~fC~i~~~e~~--~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~~ 89 (125)
.++.|.||+|+..+.+ .....|++.+++|.|++|.+.-|.|++||+|+.+..+|+.++..++.+++.+.+.++++...
T Consensus 29 ~~~~C~FCDia~r~~~~~ell~~En~~~V~fkDikPaA~~HYLvipK~Hi~~~~~L~k~~V~Lve~m~~~G~~~l~r~~~ 108 (166)
T KOG4359|consen 29 PKSTCVFCDIAGRQDPGTELLHCENEDLVCFKDIKPAATHHYLVVPKKHIGNCRTLRKDQVELVENMVTVGKTILERNNF 108 (166)
T ss_pred CCCceEEEEeecccCCCCceeEecCCcEEEEecCCccccceEEEechHHcCChhhcchhhHHHHHHHHHHHHHHHHHhcc
Confidence 4568999999875433 35778999999999999999999999999999999999999999999999999999888643
Q ss_pred --CCCeEEEEecCcCCCCccceeEEEEec
Q psy3327 90 --DNGYRLVVNNGRHGAQSVYHLHIHVMG 116 (125)
Q Consensus 90 --~~~~~~~~~~g~~~~~~v~HlH~HviP 116 (125)
++..+++++..| ..||.|+|+|+|-
T Consensus 109 td~~~~r~GFHLPP--f~SV~HLHlH~I~ 135 (166)
T KOG4359|consen 109 TDFTNVRMGFHLPP--FCSVSHLHLHVIA 135 (166)
T ss_pred CCchheeEeccCCC--cceeeeeeEeeec
Confidence 357778888766 4789999999874
No 17
>PF02744 GalP_UDP_tr_C: Galactose-1-phosphate uridyl transferase, C-terminal domain; InterPro: IPR005850 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C.
Probab=99.71 E-value=6.9e-17 Score=111.40 Aligned_cols=103 Identities=18% Similarity=0.343 Sum_probs=64.4
Q ss_pred CCCccccccccccC--ccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHH-HHHHHHHHcCCC
Q psy3327 14 GDTIFGRILRKEIP--CNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMV-TASKLAKKQGLD 90 (125)
Q Consensus 14 ~~C~fC~i~~~e~~--~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~-~~~~~~~~~~~~ 90 (125)
+.|+||++++.|.. .++|+++++|+++.+.+.+.|+.++|+||+|+.++.+|+++|...|+.++. ++++.-+.++.+
T Consensus 13 Gs~L~~D~~~~E~~~~~Riv~en~~f~a~vP~~a~wP~ev~ilpkrh~~~l~~l~~~E~~dlA~~l~~i~~r~d~lf~~~ 92 (166)
T PF02744_consen 13 GSCLFCDHLQMELAEGERIVYENEHFVAFVPFAARWPFEVWILPKRHVPSLADLTDEERDDLAAILKPILRRYDNLFETS 92 (166)
T ss_dssp SS-HHHHHHHHHHHH-TTEEEE-SSEEEE--TT--STT-EEEEESS--SSGGG--HHHHHHHHHHHHHHHHHHHHHCTS-
T ss_pred CCchHHHHHHHhhcCCCEEEEECCceEEEEECcccCCcEEEEecCCChhhHHHhhhHHHhhHHHHHHHHHHHhcccCCCC
Confidence 89999999987643 599999999999999999999999999999999999999999877777665 444443334444
Q ss_pred CCeEEEEecCcCCCCccc-eeEEEEec
Q psy3327 91 NGYRLVVNNGRHGAQSVY-HLHIHVMG 116 (125)
Q Consensus 91 ~~~~~~~~~g~~~~~~v~-HlH~HviP 116 (125)
..|+++++..|..+..-. ++|+|+-|
T Consensus 93 ~pY~m~ihqaP~~~~~~~~~fH~H~e~ 119 (166)
T PF02744_consen 93 FPYNMGIHQAPVNGEDPEHWFHPHFEP 119 (166)
T ss_dssp --EEEEEE---SSSS--TT--EEEEE-
T ss_pred CCCchhhhcCCCCcccchhhhhccccc
Confidence 689999998887654332 25666544
No 18
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=99.57 E-value=8.1e-15 Score=110.04 Aligned_cols=102 Identities=21% Similarity=0.395 Sum_probs=83.4
Q ss_pred CCCCCccccccccccC--ccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHc--
Q psy3327 12 PGGDTIFGRILRKEIP--CNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQ-- 87 (125)
Q Consensus 12 ~~~~C~fC~i~~~e~~--~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~-- 87 (125)
.++.|.||+++..|.. .++|+|+++|+++.+.++..|.+++|+||+|+..+.+|++++...|++++. .+..++
T Consensus 183 ~~~~~~~~~~ve~E~~~~~R~v~e~~~~~a~~Pf~a~~pfEv~i~pk~hv~~l~~~sdee~~~lA~ilk---~~~~~y~~ 259 (338)
T COG1085 183 ENGSCMYCDLVEREKGDGERIVVENDHFLAFVPFWARWPFEVLIYPKEHVSFLTDLSDEELKDLAEILK---KLLARYDN 259 (338)
T ss_pred hcCCchHHHHHHHHhccCceEEecCceeEEeccccccCceEEEeccHHHhhhhhhCCHHHHHHHHHHHH---HHHHHHhh
Confidence 5889999999988765 499999999999999999999999999999999999999998666666644 555544
Q ss_pred --CCCCCeEEEEecCcCC-CCccceeEEEEec
Q psy3327 88 --GLDNGYRLVVNNGRHG-AQSVYHLHIHVMG 116 (125)
Q Consensus 88 --~~~~~~~~~~~~g~~~-~~~v~HlH~HviP 116 (125)
+.+..|+++++..+.. ...-+|+|+|++|
T Consensus 260 ~~~~~fpY~m~~h~ap~~~~~~~~~~h~~~~p 291 (338)
T COG1085 260 LFGNSFPYSMGFHQAPFNEVNEHYHLHAEIYP 291 (338)
T ss_pred ccCCCCceeeeeecCCCCcccccceEEEEEcc
Confidence 3334688888876543 3556799999999
No 19
>PF04677 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; InterPro: IPR006768 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues. Cwf19 is part of the Cdc5p complex involved in mRNA splicing []. This domain is found in association with IPR006767 from INTERPRO, which is generally C-terminal and adjacent to this domain.
Probab=99.43 E-value=7.3e-12 Score=82.26 Aligned_cols=103 Identities=20% Similarity=0.177 Sum_probs=76.7
Q ss_pred ccCCCCCCccccccccccCccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHcC
Q psy3327 9 QAAPGGDTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQG 88 (125)
Q Consensus 9 ~~~~~~~C~fC~i~~~e~~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~ 88 (125)
+....++|+||--...-....||.-++.+++.++..|..+||++|+|-.|+.++.+++++.++++..+....++..++.+
T Consensus 6 ~~~~~~~C~fCl~n~~~~khliisiG~~~YLalpkg~L~~gH~lIvPi~H~~s~~~~de~~~~Ei~~f~~~L~~mf~~~~ 85 (121)
T PF04677_consen 6 QNKAPDNCWFCLSNPNVEKHLIISIGDEVYLALPKGPLVPGHCLIVPIQHVPSLTELDEEVWEEIRNFQKSLRKMFASQG 85 (121)
T ss_pred cCCCCCCCCCccCCCCccceEEEEEcCcEEEEeCCCCccCCEEEEEecceecccccCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 34556789999832222335899999999999999999999999999999999999999887777777776666666655
Q ss_pred CCCCeEEEEecCcCCCCccceeEEEEecC
Q psy3327 89 LDNGYRLVVNNGRHGAQSVYHLHIHVMGG 117 (125)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~v~HlH~HviPr 117 (125)
. +.-+.-.. .....|+|+++||-
T Consensus 86 ~--~vvf~E~~----~~~~~H~~iq~vPv 108 (121)
T PF04677_consen 86 K--DVVFFERV----RKRNPHTHIQCVPV 108 (121)
T ss_pred C--CEEEEEEe----CCCCcEEEEEEEEc
Confidence 3 22111111 24468999999984
No 20
>KOG2958|consensus
Probab=99.33 E-value=2.3e-12 Score=94.54 Aligned_cols=106 Identities=14% Similarity=0.239 Sum_probs=79.1
Q ss_pred CCCCCcccccccccc--CccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHH-HHHHHHHHcC
Q psy3327 12 PGGDTIFGRILRKEI--PCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMV-TASKLAKKQG 88 (125)
Q Consensus 12 ~~~~C~fC~i~~~e~--~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~-~~~~~~~~~~ 88 (125)
.++.|.+-+.++.|. ..++|.|+++|+++.+++...|+.+|+|||||+++|.+|++.+..+|+.+++ +..+..+.+.
T Consensus 197 ~hgk~ll~dy~~~E~l~Kervv~enehfivvvPywA~wPfEtllipk~h~~~~~~l~~~~k~dLasiLK~ll~Kydnlfe 276 (354)
T KOG2958|consen 197 EHGKCLLMDYVKQEALEKERVVVENEHFIVVVPYWATWPFETLLIPKRHVSRFHELDEVEKVDLASILKLLLIKYDNLFE 276 (354)
T ss_pred HcCCchHHHHHHHHHhhhceEEeecCceEEEeehhhcCcceeeeechhhhhhhcccchHHHhhHHHHHHHHHHHHHHhhc
Confidence 578899855555442 3589999999999999999999999999999999999999998888888766 3333333333
Q ss_pred CCCCeEEEEecCcCC---CCcccee-EEEEecC
Q psy3327 89 LDNGYRLVVNNGRHG---AQSVYHL-HIHVMGG 117 (125)
Q Consensus 89 ~~~~~~~~~~~g~~~---~~~v~Hl-H~HviPr 117 (125)
-...|+++++..|.. +.--.|| |+|+.|.
T Consensus 277 tsfPYsmg~h~aPl~~t~~e~~n~W~h~hFypp 309 (354)
T KOG2958|consen 277 TSFPYSMGIHGAPLGSTEQENYNHWLHMHFYPP 309 (354)
T ss_pred cCCccccccccCCcccccccccchhhhhhcccc
Confidence 335788888876642 2223354 8888874
No 21
>KOG0562|consensus
Probab=99.01 E-value=2.2e-10 Score=77.83 Aligned_cols=89 Identities=27% Similarity=0.356 Sum_probs=68.7
Q ss_pred cEEEEc-CeEEEEecCCCCCCceEEEEecC-CcCCCCCCChhhHHHHHHHHHHHHHHHHHcCCCCCeEEEEecCcCCCCc
Q psy3327 29 NFIHED-DKCVAFNDINPEAPIHFLVIPRK-PIPSLSEAGDEDAEILGHLMVTASKLAKKQGLDNGYRLVVNNGRHGAQS 106 (125)
Q Consensus 29 ~ii~e~-~~~~~~~~~~p~~~gh~lIiPk~-H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 106 (125)
.++.|+ |.++++.|.+|++..|+||+||+ -+.++.....+++.++.++..+...+...++..+ ....++.|.+++++
T Consensus 16 ~V~~es~d~vvvIrD~fPKa~~H~LvLpr~s~i~~l~~~~qe~l~ll~~~h~~~~~~v~~~~~~~-~~~~f~vG~HavPS 94 (184)
T KOG0562|consen 16 NVYIESPDDVVVIRDKFPKARMHLLVLPRRSSIDSLFSVVQEHLSLLKEDHAVGPCWVDQLTNEA-LCNYFRVGFHAVPS 94 (184)
T ss_pred eeeccCcccEEEEcccCccceeEEEEecccchhHHHHHHHHHHhhHhHHHhhcCchHHHHhcchh-hhhheeeeeccCcc
Confidence 455566 79999999999999999999964 3667777777788888888888888888776432 22234556668889
Q ss_pred cceeEEEEecCC
Q psy3327 107 VYHLHIHVMGGR 118 (125)
Q Consensus 107 v~HlH~HviPr~ 118 (125)
..++|+|||..+
T Consensus 95 M~~LHLHVISkD 106 (184)
T KOG0562|consen 95 MNNLHLHVISKD 106 (184)
T ss_pred hhheeEEEeecc
Confidence 999999999763
No 22
>KOG2476|consensus
Probab=98.91 E-value=1.9e-08 Score=78.16 Aligned_cols=100 Identities=21% Similarity=0.213 Sum_probs=74.3
Q ss_pred CCCCCccccccccccCccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHcCCCC
Q psy3327 12 PGGDTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQGLDN 91 (125)
Q Consensus 12 ~~~~C~fC~i~~~e~~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~~~~ 91 (125)
.-+.|+||--.-.-....||--+++|++-++.+|.+.+|+||||-.|+.++..|+.+....+...-...++..+..+. +
T Consensus 317 ~pg~CwFCLSnP~vEkHLIVsIG~~~YlAlaKGpLs~~HvlIipi~H~p~~~~ls~ev~~Ei~kykaal~~myk~~g~-~ 395 (528)
T KOG2476|consen 317 PPGSCWFCLSNPNVEKHLIVSIGNHFYLALAKGPLSSDHVLIIPIEHIPSLVPLSAEVTQEINKYKAALRKMYKKQGK-D 395 (528)
T ss_pred CCCceEEEecCCChhhheEEEecceeEEeecCCCCCCCeEEEEEcccccccccCCHHHHHHHHHHHHHHHHHHHhcCC-e
Confidence 457799998422223458999999999999999999999999999999999999987666666666667777776664 2
Q ss_pred CeEEEEecCcCCCCccceeEEEEecC
Q psy3327 92 GYRLVVNNGRHGAQSVYHLHIHVMGG 117 (125)
Q Consensus 92 ~~~~~~~~g~~~~~~v~HlH~HviPr 117 (125)
....-.. . --.-|+|+.+||-
T Consensus 396 ~vvfE~~----~-~rs~Hlq~Qvipv 416 (528)
T KOG2476|consen 396 AVVFERQ----S-YRSVHLQLQVIPV 416 (528)
T ss_pred EEEEEee----c-ccceeeEEEEEec
Confidence 2111111 1 1245999999985
No 23
>KOG3969|consensus
Probab=97.97 E-value=0.0001 Score=54.34 Aligned_cols=90 Identities=18% Similarity=0.349 Sum_probs=64.0
Q ss_pred cCccEEEEcC----eEEEEecC--CCC--CCceEEEEecC-CcCCCCCCChhhHHHHHHHHHHHHHHHHH-cCC-CCCeE
Q psy3327 26 IPCNFIHEDD----KCVAFNDI--NPE--APIHFLVIPRK-PIPSLSEAGDEDAEILGHLMVTASKLAKK-QGL-DNGYR 94 (125)
Q Consensus 26 ~~~~ii~e~~----~~~~~~~~--~p~--~~gh~lIiPk~-H~~~~~~L~~~e~~~l~~l~~~~~~~~~~-~~~-~~~~~ 94 (125)
...+++||+. .|+++.|. .+. -.-|++.|-.| -+.++.||+.+++.+|..+-..++.++.. .+. ++-..
T Consensus 158 E~driV~ed~d~~nGFillPDlKWdgqtld~LyllaIvhr~dikSiRDL~~~h~~lL~n~r~k~~~~i~~~y~v~~dqlr 237 (310)
T KOG3969|consen 158 EDDRIVYEDPDPENGFILLPDLKWDGQTLDSLYLLAIVHRRDIKSIRDLRPSHLQLLRNIRNKSREAIPQRYGVDPDQLR 237 (310)
T ss_pred cccceEEecCCCcCCeEEccccccCcccccceeEEEEEecCCcchhhhCCHHHHHHHHHHHHHHHHHHHHHhCCCchhEE
Confidence 3458999875 56777772 333 25566655544 48999999999999988888866666554 454 46677
Q ss_pred EEEecCcCCCCccceeEEEEecCCC
Q psy3327 95 LVVNNGRHGAQSVYHLHIHVMGGRQ 119 (125)
Q Consensus 95 ~~~~~g~~~~~~v~HlH~HviPr~~ 119 (125)
+.++.- +|.+|+|+|+++-+.
T Consensus 238 mf~HYq----PSyYHlHVHi~nik~ 258 (310)
T KOG3969|consen 238 MFFHYQ----PSYYHLHVHIVNIKH 258 (310)
T ss_pred EEEEec----CceEEEEEEEEeccC
Confidence 777753 578899999998543
No 24
>KOG2477|consensus
Probab=97.95 E-value=0.00011 Score=58.27 Aligned_cols=101 Identities=10% Similarity=-0.083 Sum_probs=65.0
Q ss_pred CCCCccccccccccCccEEEEcCeEEEEec-CCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHcCCCC
Q psy3327 13 GGDTIFGRILRKEIPCNFIHEDDKCVAFND-INPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQGLDN 91 (125)
Q Consensus 13 ~~~C~fC~i~~~e~~~~ii~e~~~~~~~~~-~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~~~~ 91 (125)
-++|++|---.......||--....|+.++ ..+...||++|+|-.|..+-..|++..++++.....-.-.+....+.
T Consensus 406 lD~C~rCfds~klpkhlviSlg~~tYLsLp~~~gL~~gHciIvptqH~~~t~slDEdvWDEIrnfrKcL~~Mfas~n~-- 483 (628)
T KOG2477|consen 406 LDTCPRCFDSEKLPKHLVISLGHRTYLSLPTQPGLAKGHCIIVPTQHRINTLSLDEDVWDEIRNFRKCLALMFASMNL-- 483 (628)
T ss_pred hhhchhhhcccccccceeEEeccceeEeccccCccccCceEEecccccccccccchHHHHHHHHHHHHHHHHHHhcCC--
Confidence 467999984333333567777777777776 55567999999999999998889888766554444422233333232
Q ss_pred CeEEEEecCcCCCCccceeEEEEecC
Q psy3327 92 GYRLVVNNGRHGAQSVYHLHIHVMGG 117 (125)
Q Consensus 92 ~~~~~~~~g~~~~~~v~HlH~HviPr 117 (125)
+.- .+-+.+ .-+.-+|+-+|-||-
T Consensus 484 dvi-FyE~a~-~l~rrpH~~IeCIPv 507 (628)
T KOG2477|consen 484 DVI-FYENAP-SLQRRPHTAIECIPV 507 (628)
T ss_pred CeE-EEeccC-ccccCCceeEEEeec
Confidence 221 122222 124578999999985
No 25
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=97.86 E-value=0.00013 Score=55.52 Aligned_cols=64 Identities=13% Similarity=0.144 Sum_probs=46.2
Q ss_pred eEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHcCC--CCC-eEEEEecCcCCCCccceeEEEEec
Q psy3327 50 HFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQGL--DNG-YRLVVNNGRHGAQSVYHLHIHVMG 116 (125)
Q Consensus 50 h~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~~--~~~-~~~~~~~g~~~~~~v~HlH~HviP 116 (125)
.++|...+|..++.+++.+++ .+++..-++-.+.+.. .-. +.+.-|.|..+|.|..|-|..|+.
T Consensus 95 eVii~sp~H~~~l~~~~~~~i---~~v~~~~~~r~~~l~~~~~~~yv~if~N~G~~aGaSl~HpH~Qi~a 161 (329)
T cd00608 95 EVICFSPDHNLTLAEMSVAEI---REVVEAWAERTRELGKNPRIKYVQIFENKGAEMGASLPHPHGQIWA 161 (329)
T ss_pred EEEEECCcccCChhhCCHHHH---HHHHHHHHHHHHHHhcCCCCcEEEEEeecCcccccCCCCCCeeeee
Confidence 678899999999999998874 3444434444444432 123 345678899999999999999875
No 26
>PLN03103 GDP-L-galactose-hexose-1-phosphate guanyltransferase; Provisional
Probab=97.86 E-value=8.1e-05 Score=57.73 Aligned_cols=72 Identities=19% Similarity=0.243 Sum_probs=49.5
Q ss_pred cCeEEEEecCCCCCCceEEEEecC--CcCCCCCCChhhHHHHHHHHHHHHHHHHHcCCCCCeEEEEecCcCCCCccceeE
Q psy3327 34 DDKCVAFNDINPEAPIHFLVIPRK--PIPSLSEAGDEDAEILGHLMVTASKLAKKQGLDNGYRLVVNNGRHGAQSVYHLH 111 (125)
Q Consensus 34 ~~~~~~~~~~~p~~~gh~lIiPk~--H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~HlH 111 (125)
+....++.+..|..+||+|+||+. |.... |+. +++..+..++...+. .+|++++|. ..+.-+++|+|
T Consensus 168 ~s~~~VlINvsPI~~gH~LlvP~~~~~lPQ~--i~~-------~~l~la~~~a~~~~~-p~frvgYNS-lGA~ASvNHLH 236 (403)
T PLN03103 168 NSPNVVAINVSPIEYGHVLLVPRVLDCLPQR--IDP-------DSFLLALYMAAEANN-PYFRVGYNS-LGAFATINHLH 236 (403)
T ss_pred CCccEEEEeCCCCccCeEEEcCCcccCCCeE--ecH-------HHHHHHHHHHHhcCC-CcEEEEecC-CccccCcceee
Confidence 455688999999999999999765 44433 332 233334455554443 579999886 43556899999
Q ss_pred EEEec
Q psy3327 112 IHVMG 116 (125)
Q Consensus 112 ~HviP 116 (125)
+|..-
T Consensus 237 FQa~y 241 (403)
T PLN03103 237 FQAYY 241 (403)
T ss_pred eeecc
Confidence 99764
No 27
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=97.49 E-value=0.00083 Score=51.16 Aligned_cols=103 Identities=13% Similarity=0.037 Sum_probs=66.9
Q ss_pred CCCCCCccccccc---ccc---CccEEEEcCeEEEEecCCC--------------CCCceEEEEecCCcCCCCCCChhhH
Q psy3327 11 APGGDTIFGRILR---KEI---PCNFIHEDDKCVAFNDINP--------------EAPIHFLVIPRKPIPSLSEAGDEDA 70 (125)
Q Consensus 11 ~~~~~C~fC~i~~---~e~---~~~ii~e~~~~~~~~~~~p--------------~~~gh~lIiPk~H~~~~~~L~~~e~ 70 (125)
..+..|+||.=-. .+. ....+++++.=.+-.|... +....++|-...|-.++.+|+.++
T Consensus 37 ~~~~~CpfC~gn~~~t~~~~~~~~~~~~~N~fp~v~~d~p~~~~~~~~~~~~~~~~g~~~VIvesp~H~~~l~~~~~~~- 115 (338)
T COG1085 37 DHDPTCPFCPGNERTTEENPRYWHVRVFPNDFPAVSEDPPDAPGSEDPLFKIQEARGKSRVIVESPDHSKTLPELPVEE- 115 (338)
T ss_pred ccCCcCCccCCcceecccCCCCcceeecCCcchhhcCCCCCCCccccchhcccccCcceEEEEECCcccCccccCCHHH-
Confidence 4578899998321 111 1245566655555444322 122335677888999999999887
Q ss_pred HHHHHHHHHHHHHHHHcCCC---CCeEEEEecCcCCCCccceeEEEEec
Q psy3327 71 EILGHLMVTASKLAKKQGLD---NGYRLVVNNGRHGAQSVYHLHIHVMG 116 (125)
Q Consensus 71 ~~l~~l~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~v~HlH~HviP 116 (125)
+.+++.+.+...+.++.. .-+.+..|.|..+|.|.+|-|..|+.
T Consensus 116 --~~~vv~~~~e~~~~L~~~~~~~yV~iF~N~Gk~~G~S~~HPH~Qi~a 162 (338)
T COG1085 116 --IEEVVKLWQERVRELYEREKYKYVQIFENKGKAAGASLPHPHGQIVA 162 (338)
T ss_pred --HHHHHHHHHHHHHHHhhccCcceEEeeeccCcccCccCCCCCcceee
Confidence 445565555666665422 23466789999999999999999864
No 28
>PLN02643 ADP-glucose phosphorylase
Probab=97.40 E-value=0.0023 Score=48.91 Aligned_cols=65 Identities=14% Similarity=0.146 Sum_probs=46.0
Q ss_pred ceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHcCCC--CC-eEEEEecCcCCCCccceeEEEEec
Q psy3327 49 IHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQGLD--NG-YRLVVNNGRHGAQSVYHLHIHVMG 116 (125)
Q Consensus 49 gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~~~--~~-~~~~~~~g~~~~~~v~HlH~HviP 116 (125)
..++|-.-+|..++.+|+.+++. .++.+-+.-.+.++.. -. +.+.-|.|..+|.|..|-|-.|+.
T Consensus 108 ~eVii~sp~H~~~l~~~~~~~i~---~v~~~~~~r~~~l~~~~~i~yv~iF~N~G~~aGaSl~HPH~Qi~a 175 (336)
T PLN02643 108 HDVVIETPVHSVQLSDLPARHIG---EVLKAYKKRINQLQSDSRFKYVQVFKNHGASAGASMSHSHSQIIA 175 (336)
T ss_pred EEEEEeCCccCCChHHCCHHHHH---HHHHHHHHHHHHHhcCCCceEEEEEeecCccCCcCCCCCceeeEe
Confidence 35678888999999999988744 4444333444444321 12 345678899999999999999875
No 29
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=97.23 E-value=0.0028 Score=48.67 Aligned_cols=65 Identities=14% Similarity=0.108 Sum_probs=45.9
Q ss_pred ceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHcCCCCCe-EEEEecCcCCCCccceeEEEEec
Q psy3327 49 IHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQGLDNGY-RLVVNNGRHGAQSVYHLHIHVMG 116 (125)
Q Consensus 49 gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~v~HlH~HviP 116 (125)
..++|-..+|..++.+|+.+++. .++.+-+.-.+.++..-.| .+.-|.|..+|.|..|-|-.|+.
T Consensus 106 ~eViv~sp~H~~~l~~~~~~~i~---~v~~~~~~r~~~l~~~i~yv~iF~N~G~~~GaSl~HPH~Qi~a 171 (346)
T PRK11720 106 SRVICFSPDHSKTLPELSVAALR---EVVDTWQEQTAELGKTYPWVQVFENKGAAMGCSNPHPHGQIWA 171 (346)
T ss_pred EEEEEECCCcCCChhHCCHHHHH---HHHHHHHHHHHHHHhCCcEEEEEeecCcccCcCCCCCceeeee
Confidence 45778899999999999998754 3444333334444321233 45678899999999999999874
No 30
>TIGR00672 cdh CDP-diacylglycerol pyrophosphatase, bacterial type. Alternate names for this enzyme include CDP-diglyceride hydrolase and CDP-diacylglycerol hydrolase.
Probab=97.21 E-value=0.0031 Score=46.10 Aligned_cols=98 Identities=18% Similarity=0.359 Sum_probs=66.5
Q ss_pred CCCccccccccc-cCccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCC---CCChhhHHHHHHHHHHHHHHHHHcCC
Q psy3327 14 GDTIFGRILRKE-IPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLS---EAGDEDAEILGHLMVTASKLAKKQGL 89 (125)
Q Consensus 14 ~~C~fC~i~~~e-~~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~---~L~~~e~~~l~~l~~~~~~~~~~~~~ 89 (125)
..|+.-.-.+|. .|...|.....++++.|. ..+.|.|+||.+.++-+. -+++.....+..-...-.-+.++++.
T Consensus 39 ~qCvp~~~~~~~p~PC~~Vd~~~gyvvlKD~--~Gp~qyLLmPt~rIsGIEsP~Ll~~~tpnyf~~AW~aR~~v~~~~g~ 116 (250)
T TIGR00672 39 EECLPNQQQNQNPSPCAEVKPNAGYVVLKDL--NGPLQYLLMPTYRINGTESPLLLDPSTPNFFWLAWQARDFMSKKYGQ 116 (250)
T ss_pred hhcCCchhccCCCCCcceEcCCCCeEEEeCC--CCCceeEEeeccccCCccChhhcCCCCccHHHHHHHHhHHHHHhcCC
Confidence 457766544443 344566677889999886 778999999999987664 35555555666666544455566664
Q ss_pred --CC-CeEEEEecCcCCCCccceeEEEEe
Q psy3327 90 --DN-GYRLVVNNGRHGAQSVYHLHIHVM 115 (125)
Q Consensus 90 --~~-~~~~~~~~g~~~~~~v~HlH~Hvi 115 (125)
++ .+.+.+|. ..|-|-.|+|+||=
T Consensus 117 pipd~~lsLaINS--~~gRSQnQLHIHIs 143 (250)
T TIGR00672 117 PIPDRAVSLAINS--RTGRSQNHFHIHIS 143 (250)
T ss_pred CCChhheeEEecC--CCCcccccceeeHh
Confidence 33 45566665 35788999999984
No 31
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=97.19 E-value=0.0039 Score=47.86 Aligned_cols=65 Identities=14% Similarity=0.106 Sum_probs=44.9
Q ss_pred ceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHcCCCCCe-EEEEecCcCCCCccceeEEEEec
Q psy3327 49 IHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQGLDNGY-RLVVNNGRHGAQSVYHLHIHVMG 116 (125)
Q Consensus 49 gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~v~HlH~HviP 116 (125)
..++|-.-+|-.++.+|+.+++.. ++.+-+.-.+.++..-.| .+.-|-|..+|.|..|-|-.|+.
T Consensus 106 ~eVii~sp~H~~~l~~m~~~~i~~---v~~~~~~r~~~l~~~i~yv~iF~N~G~~~GaSl~HPH~Qi~a 171 (347)
T TIGR00209 106 SRVICFSPDHSKTLPELSVAALTE---IVKTWQEQTAELGKTYPWVQIFENKGAAMGCSNPHPHGQIWA 171 (347)
T ss_pred EEEEEeCCCccCChhHCCHHHHHH---HHHHHHHHHHHHHhCCcEEEEEeecCcccCcCCCCCceeeee
Confidence 457788889999999999987543 333333333333321233 44678899999999999999874
No 32
>PRK05471 CDP-diacylglycerol pyrophosphatase; Provisional
Probab=97.10 E-value=0.005 Score=45.10 Aligned_cols=98 Identities=17% Similarity=0.341 Sum_probs=65.5
Q ss_pred CCCccccccccc-cCccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCC---CChhhHHHHHHHHHHHHHHHHHcCC
Q psy3327 14 GDTIFGRILRKE-IPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSE---AGDEDAEILGHLMVTASKLAKKQGL 89 (125)
Q Consensus 14 ~~C~fC~i~~~e-~~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~---L~~~e~~~l~~l~~~~~~~~~~~~~ 89 (125)
..|+.-.-.++. .|...|.....++++.| +..+.|.|+||.+.++-+.+ +++.....+..-...-.-+.++++.
T Consensus 40 ~qCvp~~~~~~~p~PC~~Vd~~~gyvvlKD--~~Gp~qyLLiPt~rIsGIEsP~Ll~~~tpnyf~~AW~aR~~v~~~~g~ 117 (252)
T PRK05471 40 EQCLPNQQQNQNPAPCAEVDPQAGYVLLKD--RNGPLQYLLMPTYRISGIESPLLLEPSTPNYFALAWQARDFMSKKYGK 117 (252)
T ss_pred hhcCCchhccCCCCCCeeEccCCCeEEEec--CCCCcceEEeecccccCccCccccCCCCccHHHHHHHHhHHHHHhhCC
Confidence 457766544443 34466667788888885 66788999999999876543 5555455666666644455566664
Q ss_pred --CC-CeEEEEecCcCCCCccceeEEEEe
Q psy3327 90 --DN-GYRLVVNNGRHGAQSVYHLHIHVM 115 (125)
Q Consensus 90 --~~-~~~~~~~~g~~~~~~v~HlH~Hvi 115 (125)
++ .+.+.+|. ..|-|-.|||+||=
T Consensus 118 pipd~~lsLaINS--~~gRSQnQLHIHIs 144 (252)
T PRK05471 118 PIPDSAVSLAINS--RYGRTQDQLHIHIS 144 (252)
T ss_pred CCChhheEEEecC--CCCccccceeeehh
Confidence 33 45566665 35788999999984
No 33
>COG4360 APA2 ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phosphorylase II) [Nucleotide transport and metabolism]
Probab=97.02 E-value=0.0012 Score=47.93 Aligned_cols=71 Identities=18% Similarity=0.170 Sum_probs=50.7
Q ss_pred eEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHcCCCCCeEEEEecCcCCCCccceeEEEEe
Q psy3327 36 KCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQGLDNGYRLVVNNGRHGAQSVYHLHIHVM 115 (125)
Q Consensus 36 ~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~HlH~Hvi 115 (125)
....+++.+|..+.|+|||.++--..-+.|+..+ +.. +-+++..+ +|. +.+|.|+.+|-|.+|=|+.++
T Consensus 93 th~~llNKF~VVdeHlLiVTrefedQ~s~LTl~D------f~t-a~~vL~~l---dgl-vFYNsGp~aGaSq~HkHLQi~ 161 (298)
T COG4360 93 THKLLLNKFPVVDEHLLIVTREFEDQESALTLAD------FTT-AYAVLCGL---DGL-VFYNSGPIAGASQDHKHLQIV 161 (298)
T ss_pred hHhhhhhcCCcccceeEEeehhhhhccccCCHHH------HHH-HHHHHhcc---cce-EEecCCCCcCcCCCccceeEe
Confidence 4567889999999999999987655444555443 222 22232222 443 568999999999999999999
Q ss_pred cC
Q psy3327 116 GG 117 (125)
Q Consensus 116 Pr 117 (125)
|-
T Consensus 162 pm 163 (298)
T COG4360 162 PM 163 (298)
T ss_pred ec
Confidence 85
No 34
>KOG2720|consensus
Probab=96.78 E-value=0.002 Score=49.05 Aligned_cols=73 Identities=27% Similarity=0.301 Sum_probs=44.2
Q ss_pred EcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHcCCCCCeEEEEecCcCCCCccceeEE
Q psy3327 33 EDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQGLDNGYRLVVNNGRHGAQSVYHLHI 112 (125)
Q Consensus 33 e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~HlH~ 112 (125)
|+.. +|..+..|...||+||||+---..---++... + ..+-.+..... .+.|++++|.- .+.-+|.|+|+
T Consensus 165 e~~~-vvaIN~sPie~~H~LiiP~V~kc~pQrit~~a------l-~lav~~m~~~d-d~~frlgyNSl-ga~AsVNHLHf 234 (431)
T KOG2720|consen 165 ENSP-VVAINVSPIEYGHVLIIPRVLKCLPQRITHKA------L-LLAVTMMAEAD-DPYFRLGYNSL-GAFASVNHLHF 234 (431)
T ss_pred ccCc-eEEEecCccccCcEEEecchhccCcceeeHHH------H-HHHHHHHHhcC-Cchhheecccc-hhhhhhhhhhh
Confidence 3444 66777889999999999986544333343322 1 11222222222 14677777752 24578999999
Q ss_pred EEe
Q psy3327 113 HVM 115 (125)
Q Consensus 113 Hvi 115 (125)
|..
T Consensus 235 ha~ 237 (431)
T KOG2720|consen 235 HAY 237 (431)
T ss_pred hhh
Confidence 964
No 35
>PF02611 CDH: CDP-diacylglycerol pyrophosphatase; InterPro: IPR003763 The CDP-diacylglycerol pyrophosphatases 3.6.1.26 from EC play a role in the regulation of phospholipid metabolism by inositol, as well as regulating the cellular levels of phosphatidylinositol [].; GO: 0008715 CDP-diacylglycerol diphosphatase activity, 0008654 phospholipid biosynthetic process, 0016020 membrane; PDB: 2POF_A.
Probab=96.55 E-value=0.015 Score=41.96 Aligned_cols=84 Identities=19% Similarity=0.387 Sum_probs=46.7
Q ss_pred ccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCC---CChhhHHHHHHHHHHHHHHHHHcCCC---CCeEEEEecCc
Q psy3327 28 CNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSE---AGDEDAEILGHLMVTASKLAKKQGLD---NGYRLVVNNGR 101 (125)
Q Consensus 28 ~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~---L~~~e~~~l~~l~~~~~~~~~~~~~~---~~~~~~~~~g~ 101 (125)
...|-....++++.| +..+.|.|+||.+.++-+.+ +++.....++.-...-..+.++++.+ +.+.+.+|.-
T Consensus 26 C~~Vd~~~gyvvlKd--~~G~~qyLL~Pt~rIsGIEsP~Ll~~~~pNyf~~AW~aR~~v~~~~g~~lpd~~lsLaINS~- 102 (222)
T PF02611_consen 26 CAQVDLQQGYVVLKD--RNGPLQYLLMPTDRISGIESPALLEPRTPNYFADAWQARGFVSQKLGKPLPDDDLSLAINSQ- 102 (222)
T ss_dssp SSEEETTTTEEEEE---SSSSS-EEEEESS---STT-GGGGSTTS--HHHHHHHTTHHHHHHHTS---GGGEEEEEB-G-
T ss_pred CeEEcCCCCEEEEeC--CCCCccEEEeeccccCCccChhhcCCCCccHHHHHHHhhHHHHHhcCCCCCccceEEEecCc-
Confidence 345555777888886 56689999999999876653 45555566666665444555666642 4667777753
Q ss_pred CCCCccceeEEEEe
Q psy3327 102 HGAQSVYHLHIHVM 115 (125)
Q Consensus 102 ~~~~~v~HlH~Hvi 115 (125)
.|-+-.|||+||=
T Consensus 103 -~gRsQdQLHIHis 115 (222)
T PF02611_consen 103 -YGRSQDQLHIHIS 115 (222)
T ss_dssp -GG-S--S--EEEE
T ss_pred -cCccccceEeEhh
Confidence 4778899999984
No 36
>COG2134 Cdh CDP-diacylglycerol pyrophosphatase [Lipid metabolism]
Probab=96.35 E-value=0.048 Score=39.03 Aligned_cols=98 Identities=17% Similarity=0.324 Sum_probs=60.2
Q ss_pred CCCccccccccc-cCccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCC---CChhhHHHHHHHHHHHHHHHHHcCC
Q psy3327 14 GDTIFGRILRKE-IPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSE---AGDEDAEILGHLMVTASKLAKKQGL 89 (125)
Q Consensus 14 ~~C~fC~i~~~e-~~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~---L~~~e~~~l~~l~~~~~~~~~~~~~ 89 (125)
+.|.+-..-++. .|...|-+...++++.|.+ .|...|++|.-+++-+.+ ++.+....+....+.-.-+.++++.
T Consensus 40 e~C~p~~~~~~~paPCaeV~~~AG~av~Kd~~--gPlQyLLmPt~rItGiEsP~L~e~atpNyf~~AWqAR~fms~kyg~ 117 (252)
T COG2134 40 ERCLPNYQQNQNPAPCAEVKPQAGYAVLKDRN--GPLQYLLMPTARITGIESPLLLEPATPNYFYLAWQARDFMSKKYGN 117 (252)
T ss_pred HHcCcchhccCCCCCceeecCCCceEEEeccC--CCceeEeeeeecccCCcChhhcCCCCccHHHHHHHHHHHHHHHhCC
Confidence 457766643332 3446778888888888854 355669999999876543 3444444555544433334455654
Q ss_pred --CC-CeEEEEecCcCCCCccceeEEEEe
Q psy3327 90 --DN-GYRLVVNNGRHGAQSVYHLHIHVM 115 (125)
Q Consensus 90 --~~-~~~~~~~~g~~~~~~v~HlH~Hvi 115 (125)
++ .+.+.+|. ..|.+-.|+|+||=
T Consensus 118 ~ipd~dvsLaINs--~~gRtQdqlHIHIS 144 (252)
T COG2134 118 PIPDSDVSLAINS--KNGRTQDQLHIHIS 144 (252)
T ss_pred CCCccceEEEecC--ccCccccceEEEEE
Confidence 32 44455553 35778899999984
No 37
>COG5075 Uncharacterized conserved protein [Function unknown]
Probab=96.09 E-value=0.016 Score=42.34 Aligned_cols=87 Identities=20% Similarity=0.307 Sum_probs=51.6
Q ss_pred cCccEEEEcCe----EEEEecC--CCC--CCceEE-EEecCCcCCCCCCChhhHHHHHHHHHHHHHHHH-HcCC-CCCeE
Q psy3327 26 IPCNFIHEDDK----CVAFNDI--NPE--APIHFL-VIPRKPIPSLSEAGDEDAEILGHLMVTASKLAK-KQGL-DNGYR 94 (125)
Q Consensus 26 ~~~~ii~e~~~----~~~~~~~--~p~--~~gh~l-IiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~-~~~~-~~~~~ 94 (125)
...+++||+.. |+++.|. .+. ..-|++ |+-+.-+.++.||...++..+..+-........ ..+. ++...
T Consensus 153 e~erivyed~~~~ngfiiiPD~KWd~qt~dsL~l~aIv~~~diktiRDlr~~~i~~l~rl~~kiltevp~~f~vd~n~l~ 232 (305)
T COG5075 153 ENERIVYEDESVINGFIIIPDMKWDGQTVDSLYLVAIVYRTDIKTIRDLRYYHILWLIRLNNKILTEVPYQFGVDPNELR 232 (305)
T ss_pred ccceeEecCcccccCceeccccccCccceeeeeEEEEEecCCchhhhhCchhhhhHHHhhcccceEecchhcCcChhHeE
Confidence 44589999875 4557762 222 244555 445555899999998887655444331111111 1122 24555
Q ss_pred EEEecCcCCCCccceeEEEEec
Q psy3327 95 LVVNNGRHGAQSVYHLHIHVMG 116 (125)
Q Consensus 95 ~~~~~g~~~~~~v~HlH~HviP 116 (125)
+.++. .++-+|+|+||+-
T Consensus 233 mfvHY----~PsYyhlHvHI~n 250 (305)
T COG5075 233 MFVHY----QPSYYHLHVHIVN 250 (305)
T ss_pred EEEEe----ccceEEEEEEEEe
Confidence 66664 3578899999974
No 38
>PF01087 GalP_UDP_transf: Galactose-1-phosphate uridyl transferase, N-terminal domain; InterPro: IPR005849 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C 1Z84_B 1ZWJ_A 2Q4L_A 2H39_B 2Q4H_A.
Probab=92.76 E-value=0.49 Score=33.00 Aligned_cols=64 Identities=11% Similarity=0.145 Sum_probs=39.1
Q ss_pred eEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHcCC---CCCeEEEEecCcCCCCccceeEEEEec
Q psy3327 50 HFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQGL---DNGYRLVVNNGRHGAQSVYHLHIHVMG 116 (125)
Q Consensus 50 h~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~v~HlH~HviP 116 (125)
.++|-.-+|-.++.+|+.++.. .++.+.+.-...+.. ..-..+.-|.|..+|.+..|-|-.|+.
T Consensus 112 EViIe~p~h~~~~~~~~~~~~~---~i~~a~~~r~~~l~~~~~~~yv~~FeN~G~~~GaSl~HpHsQi~a 178 (183)
T PF01087_consen 112 EVIIESPKHERTLADMSVKEIK---EILKAWRDRYRELSSDKYIKYVLIFENEGYEAGASLPHPHSQIIA 178 (183)
T ss_dssp EEEES-SSTT--GGGS-HHHHH---HHHHHHHHHHHHHCT-TT-SEEEEEEEESGGGT-SSSSSEEEEEE
T ss_pred EEEEeCCCCCCChhhCCHHHHH---HHHHHHHHHHHHHhccCCcceEEEEEecCCcCCCCCCCCceEEec
Confidence 5677788888999999988744 344433333333322 122345678899999999999999875
No 39
>KOG2958|consensus
Probab=90.04 E-value=1.6 Score=32.95 Aligned_cols=106 Identities=14% Similarity=0.024 Sum_probs=61.6
Q ss_pred hhccCCCCCCccccc---cccc-c---CccEEEEcCeEEEEecCC-------------CCCCceEEEEecCCcCC--CCC
Q psy3327 7 AAQAAPGGDTIFGRI---LRKE-I---PCNFIHEDDKCVAFNDIN-------------PEAPIHFLVIPRKPIPS--LSE 64 (125)
Q Consensus 7 ~~~~~~~~~C~fC~i---~~~e-~---~~~ii~e~~~~~~~~~~~-------------p~~~gh~lIiPk~H~~~--~~~ 64 (125)
.+...++..|++|.= ..|. . ....|++++.-.+-.+.. -...|-+-||--....+ +.+
T Consensus 45 ~~~p~~dp~cplcpG~~ra~g~~np~ydstyvf~NdypA~~~d~p~~~~~~~~~lfk~~~v~G~c~Vicf~Pnh~ltLp~ 124 (354)
T KOG2958|consen 45 NTTPSYDPLCPLCPGNIRATGFRNPDYDSTYVFDNDYPALRRDQPTQGQDESTGLFKTISVKGVCKVICFSPNHNLTLPL 124 (354)
T ss_pred CCCCcCCCCCCCCCCcchhccccCCCCccceeccCCchhhccCCCCCCCCCCccchhheeecceeEEEEeCCcccccccc
Confidence 334456788999972 1111 1 124566666544433310 01245555655555544 445
Q ss_pred CChhhHHHHHHHHHHHHHHHHHcCCCCCeEE---EEecCcCCCCccceeEEEEe
Q psy3327 65 AGDEDAEILGHLMVTASKLAKKQGLDNGYRL---VVNNGRHGAQSVYHLHIHVM 115 (125)
Q Consensus 65 L~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~---~~~~g~~~~~~v~HlH~Hvi 115 (125)
++..+ +..++..=+++...++..+.|++ .-|-|...|+|.+|-|-.+.
T Consensus 125 m~~~~---i~~vv~aw~~~~~~l~~h~~y~yvQIFeNkGa~mGcSn~HpHgQ~w 175 (354)
T KOG2958|consen 125 MDVVE---IRDVVDAWKKLYNELGQHDSYKYVQIFENKGAAMGCSNPHPHGQAW 175 (354)
T ss_pred CCHHH---HHHHHHHHHHHHHHhcccCCcceeeeeccCCcccccCCCCccccee
Confidence 65554 66677766677777775455544 45678888999999997653
No 40
>PF14317 YcxB: YcxB-like protein
Probab=83.03 E-value=3.1 Score=22.77 Aligned_cols=27 Identities=11% Similarity=0.207 Sum_probs=19.6
Q ss_pred cEEEEcCeEEEEecCCCCCCceEEEEecCCc
Q psy3327 29 NFIHEDDKCVAFNDINPEAPIHFLVIPRKPI 59 (125)
Q Consensus 29 ~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~ 59 (125)
.-+.|+++.+.+.- ..+..++|||+-.
T Consensus 23 ~~v~e~~~~~~l~~----~~~~~~~iPk~~f 49 (62)
T PF14317_consen 23 KKVVETKDYFYLYL----GKNQAFIIPKRAF 49 (62)
T ss_pred EEEEEeCCEEEEEE----CCCeEEEEEHHHC
Confidence 45677777777654 5678899999844
No 41
>PF01076 Mob_Pre: Plasmid recombination enzyme; InterPro: IPR001668 With some plasmids, recombination can occur in a site specific manner that is independent of RecA. In such cases, the recombination event requires another protein called Pre. Pre is a plasmid recombination enzyme. This protein is also known as Mob (conjugative mobilisation) [].; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005727 extrachromosomal circular DNA
Probab=77.95 E-value=11 Score=26.49 Aligned_cols=34 Identities=24% Similarity=0.252 Sum_probs=21.1
Q ss_pred HHHHHcCCCCCeEEEEecCcCCCCccceeEEEEecCCC
Q psy3327 82 KLAKKQGLDNGYRLVVNNGRHGAQSVYHLHIHVMGGRQ 119 (125)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~g~~~~~~v~HlH~HviPr~~ 119 (125)
.+.+.+|...-++..++ ...+.||+|+-+||...
T Consensus 110 ~~~~r~g~~ni~~a~vH----~DE~tPH~H~~~vP~~~ 143 (196)
T PF01076_consen 110 WLQERYGNENIVSAVVH----LDETTPHMHFDVVPIDE 143 (196)
T ss_pred HHHHHCCchhEEEEEEE----CCCCCcceEEEEeeccc
Confidence 34444453234444555 34679999999999743
No 42
>PF03432 Relaxase: Relaxase/Mobilisation nuclease domain ; InterPro: IPR005094 Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalysing trans-esterification [].
Probab=77.13 E-value=6.6 Score=27.95 Aligned_cols=36 Identities=25% Similarity=0.417 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHcCC-CCCeEEEEecCcCCCCccceeEEEEec
Q psy3327 75 HLMVTASKLAKKQGL-DNGYRLVVNNGRHGAQSVYHLHIHVMG 116 (125)
Q Consensus 75 ~l~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~v~HlH~HviP 116 (125)
.+..+++.+++.++. ...|-+..+. .-.|.|+||+-
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~v~~~H~------D~~h~H~Hivi 109 (242)
T PF03432_consen 73 QAHEIAREFAEEMGPGNHQYVVVVHT------DTDHPHVHIVI 109 (242)
T ss_pred HHHHHHHHHHHHcCCCCcceEEEECC------CcCeeeeeEEE
Confidence 455667888888875 2345555543 25699999764
No 43
>PRK13878 conjugal transfer relaxase TraI; Provisional
Probab=64.14 E-value=12 Score=32.02 Aligned_cols=36 Identities=19% Similarity=0.264 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHcCCC-CCeEEEEecCcCCCCccceeEEEEec
Q psy3327 75 HLMVTASKLAKKQGLD-NGYRLVVNNGRHGAQSVYHLHIHVMG 116 (125)
Q Consensus 75 ~l~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~v~HlH~HviP 116 (125)
.+..++..+.+.++.. .-|-+..+. ...|+|+||+-
T Consensus 85 ~~~~I~~~~~~~LG~~~hQ~Vva~H~------DTdh~HiHIvi 121 (746)
T PRK13878 85 TLRAIEERICAGLGYGEHQRVSAVHH------DTDNLHIHIAI 121 (746)
T ss_pred HHHHHHHHHHHHhCCCCceEEEEEEC------CCCCceeEEEE
Confidence 3455677888888764 355555553 35799999874
No 44
>cd01617 DCX Ubiquitin-like domain of DCX. DCX The ubiquitin-like DCX domain is present in tandem within the N-terminal half of the doublecortin protein. Doublecortin is expressed in migrating neurons. Mutations in the gene encoding doublecortin cause lissencephaly in males and 'double-cortex syndrome' in females.
Probab=51.37 E-value=22 Score=21.22 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=24.1
Q ss_pred eEEEEecCCCCCCceEEEEecCCcCCCC
Q psy3327 36 KCVAFNDINPEAPIHFLVIPRKPIPSLS 63 (125)
Q Consensus 36 ~~~~~~~~~p~~~gh~lIiPk~H~~~~~ 63 (125)
.+.++.+-.+..+|..++++++.+.++.
T Consensus 2 ~I~~~rNGD~~~~g~~~~i~~~~~~sfd 29 (80)
T cd01617 2 RVVVYRNGDPFFKGVRLLVNRRRFKSFD 29 (80)
T ss_pred EEEEEECCCCCCCCEEEEEChhhhCCHH
Confidence 4678888999999999999999988774
No 45
>PF00446 GnRH: Gonadotropin-releasing hormone; InterPro: IPR002012 The gonadotropin-releasing hormones (GnRH) (gonadoliberin) [] are a family of peptides that play a pivotal role in reproduction. The main function of GnRH is to act on the pituitary to stimulate the synthesis and secretion of luteinizing and follicle-stimulating hormones, but GnRH also acts on the brain, retina, sympathetic nervous system, gonads and placenta in certain species. There seems to be at least three forms of GnRH. The second form is expressed in midbrain and seems to be widespread. The third form has only been found so far in fish. GnRH is a C-terminal amidated decapeptide processed from a larger precursor protein. Four of the ten residues are perfectly conserved in all species where GnRH has been sequenced.; GO: 0005179 hormone activity, 0007275 multicellular organismal development, 0005576 extracellular region
Probab=47.35 E-value=12 Score=13.61 Aligned_cols=7 Identities=43% Similarity=1.194 Sum_probs=4.8
Q ss_pred CCCCCCC
Q psy3327 119 QLRWPPG 125 (125)
Q Consensus 119 ~~~w~~~ 125 (125)
+.+|.||
T Consensus 4 S~~w~PG 10 (10)
T PF00446_consen 4 SHGWKPG 10 (10)
T ss_pred ccccCCC
Confidence 4677776
No 46
>PF01446 Rep_1: Replication protein; InterPro: IPR000989 Replication proteins (rep) are involved in plasmid replication. The Rep protein binds to the plasmid DNA and nicks it at the double strand origin (dso) of replication. The 3'-hydroxyl end created is extended by the host DNA replicase, and the 5' end is displaced during synthesis. At the end of one replication round, Rep introduces a second single stranded break at the dso and ligates the ssDNA extremities generating one double-stranded plasmid and one circular ssDNA form. Complementary strand synthesis of the circular ssDNA is usually initiated at the single-stranded origin by the host RNA polymerase [].; GO: 0003677 DNA binding, 0006260 DNA replication, 0005727 extrachromosomal circular DNA
Probab=47.19 E-value=90 Score=22.71 Aligned_cols=10 Identities=40% Similarity=0.879 Sum_probs=7.7
Q ss_pred ccceeEEEEe
Q psy3327 106 SVYHLHIHVM 115 (125)
Q Consensus 106 ~v~HlH~Hvi 115 (125)
...|.|+||+
T Consensus 78 g~~HPH~Hvl 87 (233)
T PF01446_consen 78 GSWHPHFHVL 87 (233)
T ss_pred CeeccceEEE
Confidence 4579999975
No 47
>TIGR03793 TOMM_pelo TOMM propeptide domain. This model represents a domain that is conserved among a large number of putative thiazole/oxazole-modified microcins (TOMM). Oddly, most of this seqence region appears homologous to nitrile hydratase subunits. This family is expanded especially in Pelotomaculum thermopropionicum SI.
Probab=46.98 E-value=27 Score=20.95 Aligned_cols=20 Identities=35% Similarity=0.559 Sum_probs=16.1
Q ss_pred CceEEEEecCCcCCCCCCChhhH
Q psy3327 48 PIHFLVIPRKPIPSLSEAGDEDA 70 (125)
Q Consensus 48 ~gh~lIiPk~H~~~~~~L~~~e~ 70 (125)
.-|.+|+|.+.-. +||++++
T Consensus 52 ~~~~lVlP~~P~~---~lse~~L 71 (77)
T TIGR03793 52 TVLYLVLPVNPDI---ELTDEQL 71 (77)
T ss_pred CeEEEEecCCCCC---CCCHHHH
Confidence 5588999999987 7888764
No 48
>PF01868 UPF0086: Domain of unknown function UPF0086; InterPro: IPR002730 The p29 subunit (also known as Rpp29 or Pop4) of the related ribonucleoproteins ribonuclease (RNase) P and RNase MRP can be found in both eukaryotes and arachea []. The structure of the RNase P subunit, Rpp29, from Methanobacterium thermoautotrophicum has been determined. Mth Rpp29 is a member of the oligonucleotide/oligosaccharide binding fold family. It contains a structured beta-barrel core and unstructured N- and C-terminal extensions bearing several highly conserved amino acid residues that could be involved in RNA contacts in the protein-RNA complex []. Rpp29 (3.1.26.5 from EC) catalyses the endonucleolytic cleavage of RNA, removing 5'-extranucleotides from tRNA precursor. It interacts with the Rpp25 and Pop5 subunits. RNase P is a ubiquitous ribonucleoprotein enzyme primarily responsible for cleaving the 5' leader sequence during maturation of tRNAs in all three domains of life. In eubacteria, this enzyme is made up of two subunits: a large RNA (approximately 120 kDa) responsible for mediating catalysis, and a small protein cofactor (approximately 15 kDa) that modulates substrate recognition and is required for efficient in vivo catalysis. In contrast, multiple proteins are associated with eukaryotic and archaeal RNase P, and these proteins exhibit no recognizable homology to the conserved bacterial protein subunit. In reconstitution experiments with recombinantly expressed and purified protein subunits Mth Rpp29, a homologue of the Rpp29 protein subunit from eukaryotic RNase P, is an essential protein component of the archaeal holoenzyme []. In Saccharomyces cerevisiae (Baker's yeast), RNase P consists of 9 protein subunits (Pop1, Pop3-8, Rpr2 and Rpp1), while in humans there are 10 subunits (Rpp14, 20, 21, 25, 29, 30, 38, 40, hPop1, 5). RNase MRP (mitochondrial RNA processing) is an rRNA processing enzyme that cleaves a specific site within precursor rRNA to generate the mature 5'-end of 5.8S rRNA []. RNase MRP also cleaves primers for mitochondrial DNA replication and CLB2 mRNA. In yeast, RNase MRP possesses one putatively catalytic RNA and at least 9 protein subunits and is highly related to RNase P (Pop1, Pop3-Pop8, Rpp1, Snm1 and Rmp1).; GO: 0003723 RNA binding, 0004540 ribonuclease activity, 0006364 rRNA processing, 0006379 mRNA cleavage, 0008033 tRNA processing, 0000172 ribonuclease MRP complex, 0030677 ribonuclease P complex; PDB: 1V76_B 2ZAE_C 1OQK_A 2KI7_A 1TSF_A 1TS9_A 1PC0_A.
Probab=46.23 E-value=43 Score=20.49 Aligned_cols=29 Identities=10% Similarity=0.052 Sum_probs=24.6
Q ss_pred ccEEEEcCeEEEEecCCCCCCceEEEEecCCcC
Q psy3327 28 CNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIP 60 (125)
Q Consensus 28 ~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~ 60 (125)
+.+|.|+.+.+.+.. ..+.+..|||++..
T Consensus 32 GiVV~ETknt~~I~t----~~~~~~~IpK~~~v 60 (89)
T PF01868_consen 32 GIVVDETKNTFVIVT----EDGKVKTIPKAGSV 60 (89)
T ss_dssp EEEEEEETTEEEEEE----TTEEEEEEESTTEE
T ss_pred EEEEEcccceEEEEe----cCCcEEEEecCCEE
Confidence 479999999999986 46679999999965
No 49
>PRK03879 ribonuclease P protein component 1; Validated
Probab=45.27 E-value=44 Score=20.92 Aligned_cols=33 Identities=9% Similarity=0.082 Sum_probs=25.3
Q ss_pred ccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCC
Q psy3327 28 CNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEA 65 (125)
Q Consensus 28 ~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L 65 (125)
+.+|.|+.+.+.+. ..+....|||.+..--.++
T Consensus 33 GiVv~ETknt~~I~-----~~~~~~~VPK~~~iF~f~~ 65 (96)
T PRK03879 33 GRVVDETRNTLVIE-----TDGKEWMVPKDGATFEFEL 65 (96)
T ss_pred EEEEEeceeEEEEE-----cCCcEEEEeCCCeEEEEEE
Confidence 57999999999998 3456889999996533444
No 50
>smart00538 POP4 A domain found in a protein subunit of human RNase MRP and RNase P ribonucleoprotein complexes and archaeal proteins.
Probab=45.12 E-value=42 Score=20.76 Aligned_cols=35 Identities=9% Similarity=0.009 Sum_probs=26.8
Q ss_pred ccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCC
Q psy3327 28 CNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAG 66 (125)
Q Consensus 28 ~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~ 66 (125)
+.+|.|+.+.+.+.... +-+.+|||.+..-...++
T Consensus 31 GiVv~ET~nt~~I~t~~----~~~~~IpK~~~vF~f~l~ 65 (92)
T smart00538 31 GIVVDETRNTLKIETKE----GRVKTVPKDGAVFEFELP 65 (92)
T ss_pred EEEEEeeeeEEEEEeCC----CcEEEEECCCeEEEEEEC
Confidence 47999999999998743 678999999965334443
No 51
>PF00552 IN_DBD_C: Integrase DNA binding domain The structure of the C-terminal DNA binding domain.; InterPro: IPR001037 Integrase comprises three domains capable of folding independently and whose three-dimensional structures are known. However, the manner in which the N-terminal, catalytic core, and C-terminal domains interact in the holoenzyme remains obscure. Numerous studies indicate that the enzyme functions as a multimer, minimally a dimer. The integrase proteins from Human immunodeficiency virus 1 (HIV-1) and Avian sarcoma virus (have been studied most carefully with respect to the structural basis of catalysis. Although the active site of avian virus integrase does not undergo significant conformational changes on binding the required metal cofactor, that of HIV-1 does. This active site-mediated conformational change in HIV-1 reorganises the catalytic core and C-terminal domains and appears to promote an interaction that is favourable for catalysis []. Retroviral integrase is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. The presence of retrovirus integrase-related gene sequences in eukaryotes is known. Bacterial transposases involved in the transposition of the insertion sequence also belong to this group. HIV-1 integrase catalyses the incorporation of virally derived DNA into the human genome. This unique step in the virus life cycle provides a variety of points for intervention and hence is an attractive target for the development of new therapeutics for the treatment of AIDS []. Substrate recognition by the retroviral integrase enzyme is critical for retroviral integration. To catalyse this recombination event, integrase must recognise and act on two types of substrates, viral DNA and host DNA, yet the necessary interactions exhibit markedly different degrees of specificity [].; GO: 0003676 nucleic acid binding; PDB: 1QMC_B 1IHV_A 1IHW_B 1C6V_X 1C0M_B 1C1A_A 1EX4_A.
Probab=43.82 E-value=41 Score=18.80 Aligned_cols=31 Identities=16% Similarity=0.263 Sum_probs=23.4
Q ss_pred CccEEEEcCeEEEEecCCCCCCceEEEEecCCcC
Q psy3327 27 PCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIP 60 (125)
Q Consensus 27 ~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~ 60 (125)
|..++++.+..+++.+. ..+-.++||+|.+.
T Consensus 21 P~~vL~~G~Gav~v~~~---~~~~~~wvP~R~~K 51 (55)
T PF00552_consen 21 PDPVLWWGEGAVVVKDQ---ESDKPIWVPRRKVK 51 (55)
T ss_dssp EEEEEEECSSEEEEECS---SC--EEEEEGGGEE
T ss_pred hhHheeeccccEEEecC---CccCEEEeehhHcE
Confidence 45899999999999873 23337899999864
No 52
>smart00537 DCX Domain in the Doublecortin (DCX) gene product. Tandemly-repeated domain in doublin, the Doublecortin gene product. Proposed to bind tubulin. Doublecortin (DCX) is mutated in human X-linked neuronal migration defects.
Probab=43.82 E-value=21 Score=21.83 Aligned_cols=29 Identities=17% Similarity=0.078 Sum_probs=24.7
Q ss_pred eEEEEecCCCCCCceEEEEecCCcCCCCC
Q psy3327 36 KCVAFNDINPEAPIHFLVIPRKPIPSLSE 64 (125)
Q Consensus 36 ~~~~~~~~~p~~~gh~lIiPk~H~~~~~~ 64 (125)
.+.++.+-.+..+|..++++++.+.++..
T Consensus 7 ~i~~~rNGD~~~~g~~~~v~~~~~~s~d~ 35 (89)
T smart00537 7 RIRFYRNGDRFFKGVRLVVNRKRFKSFEA 35 (89)
T ss_pred EEEEEeCCCCCCCCEEEEEChhhcCCHHH
Confidence 56788888999999999999999987743
No 53
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=42.14 E-value=63 Score=22.28 Aligned_cols=52 Identities=17% Similarity=0.238 Sum_probs=26.1
Q ss_pred ecCCcCCCC-CCChhhHHHHHHHHHHHHHHHHHcCCCCCeEEEEecCcCCCCccceeEEEEec
Q psy3327 55 PRKPIPSLS-EAGDEDAEILGHLMVTASKLAKKQGLDNGYRLVVNNGRHGAQSVYHLHIHVMG 116 (125)
Q Consensus 55 Pk~H~~~~~-~L~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~HlH~HviP 116 (125)
.+|++++++ .+++++.+.+.+.+...++=+..+-..++ ....|+++-++++|
T Consensus 118 ~~R~~s~~T~~vs~~~~~ki~~~i~~fRk~i~~i~~~~~----------~~~~Vy~lN~qlFP 170 (171)
T PF14394_consen 118 EERDFSGLTMSVSREDYEKIKKEIREFRKKIIAIAEEDK----------EPDRVYQLNIQLFP 170 (171)
T ss_pred cccceeeeEEEeCHHHHHHHHHHHHHHHHHHHHHHhcCC----------CCCeEEEEEEEEec
Confidence 456666663 56666655555555433322222111100 23557777777776
No 54
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=39.42 E-value=10 Score=23.77 Aligned_cols=11 Identities=27% Similarity=0.145 Sum_probs=9.0
Q ss_pred CCCCCcccccc
Q psy3327 12 PGGDTIFGRIL 22 (125)
Q Consensus 12 ~~~~C~fC~i~ 22 (125)
.|++|.||+-.
T Consensus 3 YDg~C~lC~~~ 13 (114)
T PF04134_consen 3 YDGDCPLCRRE 13 (114)
T ss_pred ECCCCHhHHHH
Confidence 58899999943
No 55
>PRK09458 pspB phage shock protein B; Provisional
Probab=36.43 E-value=71 Score=19.17 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=20.6
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHc
Q psy3327 63 SEAGDEDAEILGHLMVTASKLAKKQ 87 (125)
Q Consensus 63 ~~L~~~e~~~l~~l~~~~~~~~~~~ 87 (125)
..|+++|...|.++.+.++++.+..
T Consensus 34 ~~Ls~~d~~~L~~L~~~A~rm~~RI 58 (75)
T PRK09458 34 QGLSQEEQQRLAQLTEKAERMRERI 58 (75)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3588888888999999888887764
No 56
>PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A ....
Probab=35.04 E-value=45 Score=22.23 Aligned_cols=27 Identities=19% Similarity=0.266 Sum_probs=18.0
Q ss_pred CCcCCCCCCChhhHHHHHHHHHHHHHHHHH
Q psy3327 57 KPIPSLSEAGDEDAEILGHLMVTASKLAKK 86 (125)
Q Consensus 57 ~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~ 86 (125)
||+-++.+|+.+|+ ..++..+..+.+.
T Consensus 1 r~~l~~~dls~~ei---~~ll~~A~~lk~~ 27 (142)
T PF02729_consen 1 RHLLSIKDLSPEEI---EALLDLAKELKAA 27 (142)
T ss_dssp SEBSSGGGS-HHHH---HHHHHHHHHHHHH
T ss_pred CCcCchhhCCHHHH---HHHHHHHHHHHhh
Confidence 67888999999874 4555556655554
No 57
>COG1588 POP4 RNase P/RNase MRP subunit p29 [Translation, ribosomal structure and biogenesis]
Probab=33.19 E-value=81 Score=19.80 Aligned_cols=34 Identities=12% Similarity=0.096 Sum_probs=26.6
Q ss_pred ccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCC
Q psy3327 28 CNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAG 66 (125)
Q Consensus 28 ~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~ 66 (125)
++++.|+.+.+++..-. -..+|||++..--.++.
T Consensus 35 G~VVdETkNtLvi~t~~-----~~~~VpK~~~vfef~~~ 68 (95)
T COG1588 35 GRVVDETKNTLVIDTGS-----REKVVPKDGAVFEFEGP 68 (95)
T ss_pred EEEEeeeccEEEEECCC-----ceEEEecCcEEEEEEcC
Confidence 58999999999998843 56899999976444444
No 58
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=33.07 E-value=1.9e+02 Score=22.31 Aligned_cols=63 Identities=14% Similarity=0.216 Sum_probs=41.3
Q ss_pred CceEE-EEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHcCCCCCeEEEEecCcCCCCccceeEEEEecCCC
Q psy3327 48 PIHFL-VIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQGLDNGYRLVVNNGRHGAQSVYHLHIHVMGGRQ 119 (125)
Q Consensus 48 ~gh~l-IiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~HlH~HviPr~~ 119 (125)
.|.++ .|||+-......+..+ .++++.++++++.+++..-+|+-+..- ++.. +.=+-|-||.+
T Consensus 219 ~G~viaaV~R~K~G~~q~l~~~-----~~l~e~a~~l~~~~~l~g~~NiQ~r~d---~~g~-p~LLEINpR~s 282 (329)
T PF15632_consen 219 EGRVIAAVPRRKLGRRQVLEND-----EELIELARRLAEAFGLDGLFNIQFRYD---EDGN-PKLLEINPRPS 282 (329)
T ss_pred CCEEEEEEEEEecCceeEEEEC-----HHHHHHHHHHHHHhCCCceEEEEEEEc---CCCC-EEEEEeCCCCc
Confidence 38887 8898887544444433 367788999999999865677765541 1222 44566777754
No 59
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=32.84 E-value=91 Score=18.64 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=20.6
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHc
Q psy3327 63 SEAGDEDAEILGHLMVTASKLAKKQ 87 (125)
Q Consensus 63 ~~L~~~e~~~l~~l~~~~~~~~~~~ 87 (125)
..|+++|...|.++...++++.+.+
T Consensus 34 ~gLs~~d~~~L~~L~~~a~rm~eRI 58 (75)
T PF06667_consen 34 QGLSEEDEQRLQELYEQAERMEERI 58 (75)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4588888888999999888887764
No 60
>PHA03073 late transcription factor VLTF-2; Provisional
Probab=31.92 E-value=36 Score=23.03 Aligned_cols=10 Identities=10% Similarity=0.019 Sum_probs=7.9
Q ss_pred CCCCCccccc
Q psy3327 12 PGGDTIFGRI 21 (125)
Q Consensus 12 ~~~~C~fC~i 21 (125)
.++.|+||.-
T Consensus 48 ~~~~CwfC~q 57 (150)
T PHA03073 48 DNDYCWFCKQ 57 (150)
T ss_pred CCCcEEeecc
Confidence 4677999994
No 61
>PF15055 DUF4536: Domain of unknown function (DUF4536)
Probab=31.67 E-value=20 Score=19.52 Aligned_cols=10 Identities=20% Similarity=0.189 Sum_probs=6.5
Q ss_pred CCcccccccc
Q psy3327 15 DTIFGRILRK 24 (125)
Q Consensus 15 ~C~fC~i~~~ 24 (125)
+|+-|++++|
T Consensus 1 dC~~CRlvSG 10 (47)
T PF15055_consen 1 DCWSCRLVSG 10 (47)
T ss_pred CceeeEEecc
Confidence 4677776665
No 62
>COG2928 Uncharacterized conserved protein [Function unknown]
Probab=31.19 E-value=66 Score=23.40 Aligned_cols=35 Identities=23% Similarity=0.394 Sum_probs=27.4
Q ss_pred cCeEEEEecCCCC-CCceEEEEecCCcCCCCCCChhh
Q psy3327 34 DDKCVAFNDINPE-APIHFLVIPRKPIPSLSEAGDED 69 (125)
Q Consensus 34 ~~~~~~~~~~~p~-~~gh~lIiPk~H~~~~~~L~~~e 69 (125)
++...+|.+..|. +.|.++.+||+-+..+ +++-|+
T Consensus 152 ~~~v~VfvPTTPNPTsGfl~~Vpkedi~~l-dmtvEd 187 (222)
T COG2928 152 RPMVAVFVPTTPNPTSGFLLLVPKEDIVPL-DMTVED 187 (222)
T ss_pred CceEEEEcCCCCCCCcceEEEEEHHHceec-cccHHH
Confidence 5778899998888 7999999999998744 445443
No 63
>PF05840 Phage_GPA: Bacteriophage replication gene A protein (GPA); InterPro: IPR008766 Replication gene A proteins (also known as GpA) are found in bacteriophages and in bacteria as part of a suspected prophage. These proteins function as endonucleases during DNA replication [,,].; GO: 0006260 DNA replication
Probab=30.58 E-value=2.7e+02 Score=21.92 Aligned_cols=79 Identities=19% Similarity=0.258 Sum_probs=40.6
Q ss_pred EcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhH-HHHHHHHHHHHHHHHHcCCC-CCeEEEEecCcCCCCcccee
Q psy3327 33 EDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDA-EILGHLMVTASKLAKKQGLD-NGYRLVVNNGRHGAQSVYHL 110 (125)
Q Consensus 33 e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~-~~l~~l~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~v~Hl 110 (125)
+..++-+|...-.-+.+|-.-.--.--......++.+. ..|..+...+++.+...++. .|+++. .|+. +..||+
T Consensus 176 ~~G~~g~F~TlT~PSkyHa~~~~G~~n~kw~g~tP~daq~yL~~~W~~~Ra~l~r~~i~~yG~RV~---EPHh-DGTPHW 251 (371)
T PF05840_consen 176 ELGHVGVFITLTAPSKYHATYKNGGFNPKWNGATPRDAQRYLNKVWARIRAALKRRGIRFYGFRVA---EPHH-DGTPHW 251 (371)
T ss_pred HCCCeEEEEEecCCccccchhhcCCCccccCCCCHHHHHHHHHHHHHHHHHHHHhcCCCeeeEEee---cccC-CCCcee
Confidence 44455556655555556553211011123444556553 46666666666665555542 355553 2332 557888
Q ss_pred EEEEe
Q psy3327 111 HIHVM 115 (125)
Q Consensus 111 H~Hvi 115 (125)
|+=++
T Consensus 252 H~Llf 256 (371)
T PF05840_consen 252 HLLLF 256 (371)
T ss_pred eeeee
Confidence 87665
No 64
>PTZ00255 60S ribosomal protein L37a; Provisional
Probab=28.93 E-value=32 Score=21.38 Aligned_cols=17 Identities=18% Similarity=0.053 Sum_probs=11.7
Q ss_pred chHhhhhccCCCCCCcccc
Q psy3327 2 SEVEKAAQAAPGGDTIFGR 20 (125)
Q Consensus 2 ~~~~~~~~~~~~~~C~fC~ 20 (125)
.+|+.++.+... |+||.
T Consensus 27 ~kie~~q~a~y~--CpfCg 43 (90)
T PTZ00255 27 KKIEISQHAKYF--CPFCG 43 (90)
T ss_pred HHHHHHHhCCcc--CCCCC
Confidence 356666666554 99996
No 65
>KOG2270|consensus
Probab=28.43 E-value=1.3e+02 Score=24.34 Aligned_cols=74 Identities=26% Similarity=0.292 Sum_probs=43.5
Q ss_pred EecCCCC-CCceEEEEecCCc-----CCCC--CCChhhH-HHHHHHHHHHHHHHHHcCC--C--CCeEEEEecCcC----
Q psy3327 40 FNDINPE-APIHFLVIPRKPI-----PSLS--EAGDEDA-EILGHLMVTASKLAKKQGL--D--NGYRLVVNNGRH---- 102 (125)
Q Consensus 40 ~~~~~p~-~~gh~lIiPk~H~-----~~~~--~L~~~e~-~~l~~l~~~~~~~~~~~~~--~--~~~~~~~~~g~~---- 102 (125)
+..+.|. ...|+||+----- +.+. .|+.+++ .++.+++...+.+.+.-.+ . ..||+.++.|..
T Consensus 228 IP~PePIlLk~hVLVM~FlGrdgw~aPkLKd~~ls~~ka~~~Y~~~v~~MR~lY~~c~LVHADLSEfN~LyhdG~lyiID 307 (520)
T KOG2270|consen 228 IPCPEPILLKNHVLVMEFLGRDGWAAPKLKDASLSTSKARELYQQCVRIMRRLYQKCRLVHADLSEFNLLYHDGKLYIID 307 (520)
T ss_pred CCCCCceeeecceEeeeeccCCCCcCcccccccCChHHHHHHHHHHHHHHHHHHHHhceeccchhhhhheEECCEEEEEE
Confidence 3444554 3667766543221 1122 2444443 4666777778888877543 1 378888887753
Q ss_pred CCCccceeEEE
Q psy3327 103 GAQSVYHLHIH 113 (125)
Q Consensus 103 ~~~~v~HlH~H 113 (125)
.+|||.|=|=|
T Consensus 308 VSQSVE~DHP~ 318 (520)
T KOG2270|consen 308 VSQSVEHDHPH 318 (520)
T ss_pred ccccccCCChh
Confidence 47899887765
No 66
>cd00165 S4 S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.
Probab=27.56 E-value=48 Score=17.79 Aligned_cols=12 Identities=25% Similarity=0.462 Sum_probs=10.3
Q ss_pred cEEEEcCeEEEE
Q psy3327 29 NFIHEDDKCVAF 40 (125)
Q Consensus 29 ~ii~e~~~~~~~ 40 (125)
.++||+++++++
T Consensus 58 ~i~~ed~~~lvv 69 (70)
T cd00165 58 DIVYEDKKLLVV 69 (70)
T ss_pred ceeeccCCEEEe
Confidence 789999998875
No 67
>PRK03976 rpl37ae 50S ribosomal protein L37Ae; Reviewed
Probab=27.54 E-value=34 Score=21.26 Aligned_cols=17 Identities=12% Similarity=0.075 Sum_probs=11.4
Q ss_pred chHhhhhccCCCCCCcccc
Q psy3327 2 SEVEKAAQAAPGGDTIFGR 20 (125)
Q Consensus 2 ~~~~~~~~~~~~~~C~fC~ 20 (125)
.+|+.++.+... |+||.
T Consensus 27 ~kie~~q~a~y~--CpfCg 43 (90)
T PRK03976 27 ADIEEKMRAKHV--CPVCG 43 (90)
T ss_pred HHHHHHHhcCcc--CCCCC
Confidence 356666665554 99995
No 68
>COG4997 Uncharacterized conserved protein [Function unknown]
Probab=27.31 E-value=84 Score=19.38 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=16.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHcCC
Q psy3327 67 DEDAEILGHLMVTASKLAKKQGL 89 (125)
Q Consensus 67 ~~e~~~l~~l~~~~~~~~~~~~~ 89 (125)
+...+.|++++.++.+++.+.+.
T Consensus 51 dk~lEeLadllEvi~~ia~a~gf 73 (95)
T COG4997 51 DKNLEELADLLEVISRIAEARGF 73 (95)
T ss_pred cccHHHHHHHHHHHHHHHHHhCC
Confidence 34456778888888888888653
No 69
>PRK05270 galactose-1-phosphate uridylyltransferase; Provisional
Probab=27.12 E-value=3.3e+02 Score=22.37 Aligned_cols=73 Identities=12% Similarity=0.052 Sum_probs=47.8
Q ss_pred Hhhhhcc--CCCCCCcccccccccc-----C----ccEE---EEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhh
Q psy3327 4 VEKAAQA--APGGDTIFGRILRKEI-----P----CNFI---HEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDED 69 (125)
Q Consensus 4 ~~~~~~~--~~~~~C~fC~i~~~e~-----~----~~ii---~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e 69 (125)
|..+..+ +.-+.|..|.--.|-. | .|+| ..++.|..-..++....-|++|+-.+|..= .++.+
T Consensus 160 IAaak~~~~s~YP~C~LC~ENeGY~Gr~~hPAR~NhRiI~~~L~ge~W~fQYSPY~YynEH~Ivl~~~H~PM--kI~~~- 236 (493)
T PRK05270 160 IAAAKKAKASSYPKCLLCMENEGYAGRLNHPARSNHRIIRLTLGGESWGFQYSPYAYFNEHCIVLSEKHRPM--KISRK- 236 (493)
T ss_pred HHHHhccccCCCCcccccccccCcCCCCCCccccCceEEEEeeCCceeeeecCchheecceeEEecCccCcc--EecHH-
Confidence 4444444 3347799999655431 1 2444 678899988888899999999999999862 23333
Q ss_pred HHHHHHHHHHHH
Q psy3327 70 AEILGHLMVTAS 81 (125)
Q Consensus 70 ~~~l~~l~~~~~ 81 (125)
.+..|+..++
T Consensus 237 --tF~rLL~fv~ 246 (493)
T PRK05270 237 --TFERLLDFVE 246 (493)
T ss_pred --HHHHHHHHHH
Confidence 3445554443
No 70
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=26.74 E-value=37 Score=26.31 Aligned_cols=24 Identities=4% Similarity=0.142 Sum_probs=15.7
Q ss_pred CCCCccccccccccCccEEEEcCe
Q psy3327 13 GGDTIFGRILRKEIPCNFIHEDDK 36 (125)
Q Consensus 13 ~~~C~fC~i~~~e~~~~ii~e~~~ 36 (125)
+.+|.||..........+||.|+.
T Consensus 39 ~~~CfYCPvs~~r~gkdviyaNEr 62 (353)
T COG2108 39 NRSCFYCPVSDERKGKDVIYANER 62 (353)
T ss_pred CCCcccCcCCHHhcCCcceeeccc
Confidence 467889986544444567777764
No 71
>PF09830 ATP_transf: ATP adenylyltransferase; InterPro: IPR019200 Diadenosine 5',5'''-P-1,P-4-tetraphosphate (Ap4A) and related diadenosine oligoposphates such as Ap3A are important intracellular and extracellular signalling molecules in prokaryotes and eukaryotes []. They are implicated in the regulation of many vital celluar functions including stress response, cell division and apoptosis. Synthesis primarily occurs via aminoacyl-tRNA synthetases adding the AMP moiety of an aminoacyl-AMP to an acceptor nucleotide, and is an inevitable byproduct of protein synthesis. The concentration of these compounds must thus be controlled both to ensure the proper regulation of various celluar processes, but also to prevent their buildup to potentially toxic levels. This domain is found in a group of ATP adenylyltransferases found in bacteria and lower eukaryotes which catalyse the interconversion of Ap4A to ATP and ADP [, , ]. While these enzymes are thought to act primarily to break down Ap4A, there is evidence to suggest that in some circumstances they may also act in a biosynthetic role. Some variability in substrate range is apparent eg the cyanobacterial enzyme can also utilise Ap3A as a substrate, while the Saccharomyces enzymes apparently cannot.; GO: 0003877 ATP adenylyltransferase activity
Probab=26.66 E-value=49 Score=18.84 Aligned_cols=15 Identities=13% Similarity=0.228 Sum_probs=12.0
Q ss_pred CCceEEEEecCCcCC
Q psy3327 47 APIHFLVIPRKPIPS 61 (125)
Q Consensus 47 ~~gh~lIiPk~H~~~ 61 (125)
++.+++||||++-..
T Consensus 7 T~~wm~lvPR~~~~~ 21 (62)
T PF09830_consen 7 TRRWMMLVPRSREGF 21 (62)
T ss_pred ecCeEEEEecccccc
Confidence 567899999998654
No 72
>TIGR00280 L37a ribosomal protein L37a. This model finds eukaryotic ribosomal protein L37a and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a.
Probab=26.53 E-value=36 Score=21.19 Aligned_cols=16 Identities=19% Similarity=0.073 Sum_probs=11.2
Q ss_pred hHhhhhccCCCCCCcccc
Q psy3327 3 EVEKAAQAAPGGDTIFGR 20 (125)
Q Consensus 3 ~~~~~~~~~~~~~C~fC~ 20 (125)
+|+.++.+... |+||.
T Consensus 27 kie~~q~a~y~--CpfCg 42 (91)
T TIGR00280 27 KIEIQQKAKYV--CPFCG 42 (91)
T ss_pred HHHHHHhcCcc--CCCCC
Confidence 56666665554 99996
No 73
>TIGR01239 galT_2 galactose-1-phosphate uridylyltransferase, family 2. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=25.50 E-value=3.2e+02 Score=22.35 Aligned_cols=58 Identities=19% Similarity=0.060 Sum_probs=42.0
Q ss_pred hHhhhhccC--CCCCCcccccccccc-----C----ccEE---EEcCeEEEEecCCCCCCceEEEEecCCcC
Q psy3327 3 EVEKAAQAA--PGGDTIFGRILRKEI-----P----CNFI---HEDDKCVAFNDINPEAPIHFLVIPRKPIP 60 (125)
Q Consensus 3 ~~~~~~~~~--~~~~C~fC~i~~~e~-----~----~~ii---~e~~~~~~~~~~~p~~~gh~lIiPk~H~~ 60 (125)
+|..+..+. .-+.|..|.--.|-. | .|+| ..++.|..-..++....-|++|.-.+|..
T Consensus 156 ~IAaAk~~~~s~YPkC~LC~ENeGY~Gr~nhPAR~NhRiI~~~L~ge~W~fQYSPY~YynEHcIvl~~~H~P 227 (489)
T TIGR01239 156 AIAAAKEAKQSSYPACQLCMENEGFEGSVNHPARSNHRIIRVILEDEQWGFQFSPYAYFPEHSIVLKGKHEP 227 (489)
T ss_pred HHHHHhhCccCCCCccchhccccCcCCCCCCCcccCceEEEEeeCCccceeeccchheecceeEEecCccCC
Confidence 444554442 346799999655532 1 2444 67889998888889999999999999986
No 74
>PRK13863 type IV secretion system T-DNA border endonuclease VirD2; Provisional
Probab=25.14 E-value=1.8e+02 Score=23.30 Aligned_cols=37 Identities=19% Similarity=0.242 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHc-CC---CC--CeEEEEecCcCCCCccceeEEEEecC
Q psy3327 75 HLMVTASKLAKKQ-GL---DN--GYRLVVNNGRHGAQSVYHLHIHVMGG 117 (125)
Q Consensus 75 ~l~~~~~~~~~~~-~~---~~--~~~~~~~~g~~~~~~v~HlH~HviPr 117 (125)
.+...++.+++.. +. .+ .|-+.++. .-.|-|+||+-+
T Consensus 97 AVrdAARefA~E~FgsG~~G~~~dYV~AlH~------D~dHPHVHLvVn 139 (446)
T PRK13863 97 AAYAASREWAAEMFGSGAGGGRYNYLTAFHI------DRDHPHLHVVVN 139 (446)
T ss_pred HHHHHHHHHHHHHhCCCCCCCceeEEEEEec------CCCCCeEEEEEE
Confidence 3555677777664 32 12 34455553 236888888654
No 75
>PF04270 Strep_his_triad: Streptococcal histidine triad protein ; InterPro: IPR006270 This entry represents a repeated sequence region that includes a His-X-X-His-X-His (histidine triad) motif, which is found in family of Streptococcal proteins. Members of the family are suggested to cleave human complement component 3, and family member PhpA has been shown in vaccine studies to be a protective antigen in mice []. ; PDB: 2CS7_C.
Probab=24.93 E-value=1.4e+02 Score=16.65 Aligned_cols=33 Identities=18% Similarity=0.323 Sum_probs=21.2
Q ss_pred ccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHH
Q psy3327 28 CNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAE 71 (125)
Q Consensus 28 ~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~ 71 (125)
..|+-+++.-+++.. -+|.-.|||. +|+++|+.
T Consensus 12 ~dI~~~~~~gy~vpH-----gdH~HyI~k~------dLs~~E~~ 44 (53)
T PF04270_consen 12 ADIISETGDGYVVPH-----GDHFHYIPKS------DLSASELK 44 (53)
T ss_dssp GG--EE-SSEEEEEE-----TTEEEEEEGG------GS-HHHHH
T ss_pred HHccccCCCeEEeeC-----CCcccCCchh------hCCHHHHH
Confidence 478888888888776 4899999985 45666644
No 76
>TIGR01827 gatC_rel Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase, subunit C, putative. This model represents a family small family related to GatC, the third subunit of an enzyme for completing the charging of tRNA(Gln) by amidating the Glu-tRNA(Gln). The few known archaea that contain a member of this family appear to produce Asn-tRNA(Asn) by an analogous amidotransferase reaction. This protein is proposed to substitute for GatC in the charging of both tRNAs.
Probab=24.01 E-value=41 Score=19.95 Aligned_cols=22 Identities=14% Similarity=0.154 Sum_probs=18.2
Q ss_pred EEecCCCCCCceEEEEecCCcC
Q psy3327 39 AFNDINPEAPIHFLVIPRKPIP 60 (125)
Q Consensus 39 ~~~~~~p~~~gh~lIiPk~H~~ 60 (125)
-++..+|...+.+.+|||-|..
T Consensus 51 ~iL~NAP~~edg~F~Vp~~~~~ 72 (73)
T TIGR01827 51 KMLENAPVSDDGYVVVERGHWL 72 (73)
T ss_pred HHHHcCCcccCCEEEEecCccC
Confidence 3566899999999999998854
No 77
>COG4759 Uncharacterized protein conserved in bacteria containing thioredoxin-like domain [Posttranslational modification, protein turnover, chaperones]
Probab=22.58 E-value=77 Score=24.20 Aligned_cols=10 Identities=10% Similarity=-0.051 Sum_probs=7.9
Q ss_pred CCCccccccc
Q psy3327 14 GDTIFGRILR 23 (125)
Q Consensus 14 ~~C~fC~i~~ 23 (125)
++|.||..++
T Consensus 1 ~n~~fCS~vS 10 (316)
T COG4759 1 MNCRFCSDVS 10 (316)
T ss_pred CCcchhhhhh
Confidence 4699999776
No 78
>TIGR02147 Fsuc_second hypothetical protein, TIGR02147. This family consists of the 40 members of a paralogous protein family in the rumen anaerobe Fibrobacter succinogenes S85. Member proteins are about 270 residues long and appear to lack signal sequences and transmembrane helices. The only perfectly conserved residue is a glycine in an otherwise poorly conserved region, suggesting members are not enzymes. The family is not characterized.
Probab=22.49 E-value=2.1e+02 Score=21.36 Aligned_cols=51 Identities=12% Similarity=0.159 Sum_probs=25.9
Q ss_pred cCCcCCCC-CCChhhHHHHHHHHHHHHHHHHHc-CCCCCeEEEEecCcCCCCccceeEEEEecC
Q psy3327 56 RKPIPSLS-EAGDEDAEILGHLMVTASKLAKKQ-GLDNGYRLVVNNGRHGAQSVYHLHIHVMGG 117 (125)
Q Consensus 56 k~H~~~~~-~L~~~e~~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~v~HlH~HviPr 117 (125)
.|++++++ .++++..+.+.+.++..++=+.++ ..+. .+..|+++-++++|-
T Consensus 217 eR~~S~lT~~i~~~~~~~i~~~i~~fRk~i~~i~~~~~-----------~~~~Vy~LN~qlFPl 269 (271)
T TIGR02147 217 ERDVSTVTFGISEEAYKEIVKKIQEFRKEVLAIATKDK-----------EEDRVFQLNIQLFPL 269 (271)
T ss_pred ccccceeeEecCHHHHHHHHHHHHHHHHHHHHHHhcCC-----------CcCeEEEEeeeeecc
Confidence 45566553 466666555544444333222222 1111 234678888888884
No 79
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=21.32 E-value=1.8e+02 Score=17.28 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=19.6
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHc
Q psy3327 64 EAGDEDAEILGHLMVTASKLAKKQ 87 (125)
Q Consensus 64 ~L~~~e~~~l~~l~~~~~~~~~~~ 87 (125)
.++++|...+.++...++++.+.+
T Consensus 35 ~ls~~d~~~L~~L~~~a~rm~eRI 58 (75)
T TIGR02976 35 SLSTDDQALLQELYAKADRLEERI 58 (75)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888899988888887764
No 80
>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. The function of this C-terminal conserved domain is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0055114 oxidation-reduction process; PDB: 3BG7_F 2IGM_D 3BLY_A 3BG6_H 3LSK_A 2IGO_A 3K4B_A 3K4L_B 2IGN_B 3K4M_H ....
Probab=20.27 E-value=1.7e+02 Score=18.61 Aligned_cols=43 Identities=14% Similarity=0.167 Sum_probs=22.1
Q ss_pred CCCCceEEEEecCCcC----CCC-CCChhhHHHHHHHHHHHHHHHHHc
Q psy3327 45 PEAPIHFLVIPRKPIP----SLS-EAGDEDAEILGHLMVTASKLAKKQ 87 (125)
Q Consensus 45 p~~~gh~lIiPk~H~~----~~~-~L~~~e~~~l~~l~~~~~~~~~~~ 87 (125)
|.+.|++.+-++.... ++. ..++.++..+.+.++.++++++..
T Consensus 1 P~S~G~V~L~~~d~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~ 48 (144)
T PF05199_consen 1 PKSRGRVTLDSSDPFGQPLIDPNYLSDPRDLEALREGIKRARRILRAA 48 (144)
T ss_dssp -SS-BEEEESSSSTTSEEEEE--TTSSHHHHHHHHHHHHHHHHHHTSG
T ss_pred CCCCcEEEeCCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 5567777777754422 121 234556555666666566665554
No 81
>TIGR01363 strep_his_triad streptococcal histidine triad protein. This model represents the N-terminal half of a family of Streptococcal proteins that contain a signal peptide and then up to five repeats of a region that includes a His-X-X-His-X-His (histidine triad) motif. Three repeats are found in the seed alignment. Members of this family from Streptococcus pneumoniae are suggested to cleave human C3, and the member PhpA has been shown in vaccine studies to be a protective antigen in mice.
Probab=20.14 E-value=31 Score=26.40 Aligned_cols=18 Identities=33% Similarity=0.314 Sum_probs=14.4
Q ss_pred CCCcccee-EEEEecCCCC
Q psy3327 103 GAQSVYHL-HIHVMGGRQL 120 (125)
Q Consensus 103 ~~~~v~Hl-H~HviPr~~~ 120 (125)
.|-.|+|- |+|+||+.+|
T Consensus 202 ~gyvVpHGdH~H~Ipk~~L 220 (348)
T TIGR01363 202 DAYIVPHGDHYHYIPKNEL 220 (348)
T ss_pred CeeEeccCCcccccchhhC
Confidence 35678887 9999998765
Done!