Query psy3327
Match_columns 125
No_of_seqs 137 out of 1119
Neff 8.5
Searched_HMMs 29240
Date Fri Aug 16 22:08:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3327.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3327hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o1c_A Histidine triad nucleot 100.0 1.7E-45 5.8E-50 242.9 11.2 124 2-125 3-126 (126)
2 3n1s_A HIT-like protein HINT; 100.0 1.8E-40 6.2E-45 216.9 11.7 112 13-124 2-114 (119)
3 3oj7_A Putative histidine tria 100.0 5.1E-40 1.8E-44 214.0 11.7 111 13-124 5-116 (117)
4 1xqu_A HIT family hydrolase; p 100.0 9.5E-39 3.3E-43 215.5 11.6 114 11-124 32-146 (147)
5 4egu_A Histidine triad (HIT) p 100.0 2.5E-38 8.5E-43 206.5 10.6 111 13-123 3-114 (119)
6 3l7x_A SMU.412C, putative HIT- 100.0 5.4E-36 1.8E-40 206.9 10.1 118 1-119 22-141 (173)
7 3ksv_A Uncharacterized protein 100.0 3.5E-35 1.2E-39 198.5 11.2 103 14-119 11-116 (149)
8 3o0m_A HIT family protein; ssg 100.0 1.1E-34 3.7E-39 196.0 11.6 108 12-119 3-111 (149)
9 3lb5_A HIT-like protein involv 100.0 3.1E-34 1.1E-38 196.1 11.4 108 11-119 25-133 (161)
10 3imi_A HIT family protein; str 100.0 2.1E-34 7E-39 194.3 10.1 107 12-119 7-114 (147)
11 2eo4_A 150AA long hypothetical 100.0 5E-33 1.7E-37 187.7 11.1 104 16-119 1-104 (149)
12 1y23_A HIT, histidine triad pr 100.0 1.3E-33 4.4E-38 189.6 8.0 105 14-119 5-110 (145)
13 3r6f_A HIT family protein; str 100.0 2.1E-33 7.1E-38 186.9 8.6 100 12-119 4-103 (135)
14 3ano_A AP-4-A phosphorylase; d 100.0 3.3E-33 1.1E-37 198.8 10.2 123 1-123 51-182 (218)
15 3p0t_A Uncharacterized protein 100.0 8.3E-32 2.8E-36 179.6 9.2 102 13-120 4-106 (138)
16 2oik_A Histidine triad (HIT) p 100.0 1.2E-28 4.1E-33 167.1 11.3 103 11-123 7-112 (154)
17 1fit_A FragIle histidine prote 100.0 1.3E-28 4.3E-33 165.7 11.0 103 17-124 4-109 (147)
18 1ems_A Nitfhit, NIT-fragIle hi 99.9 2.1E-27 7.1E-32 183.5 11.3 104 13-122 296-403 (440)
19 1gup_A Galactose-1-phosphate u 99.9 6.9E-27 2.4E-31 176.4 11.1 113 13-125 193-315 (348)
20 1z84_A Galactose-1-phosphate u 99.9 1E-26 3.4E-31 175.7 11.8 103 13-119 213-320 (351)
21 3ohe_A Histidine triad (HIT) p 99.9 1.7E-22 5.9E-27 134.5 10.4 90 28-123 13-105 (137)
22 3i24_A HIT family hydrolase; s 99.9 3.3E-22 1.1E-26 134.8 9.4 90 28-123 13-105 (149)
23 3nrd_A Histidine triad (HIT) p 99.8 3.6E-20 1.2E-24 123.0 10.1 89 28-123 15-107 (135)
24 3i4s_A Histidine triad protein 99.8 6.5E-19 2.2E-23 118.6 10.0 89 28-123 18-110 (149)
25 3sp4_A Aprataxin-like protein; 99.8 6E-19 2.1E-23 123.7 5.2 89 30-118 23-126 (204)
26 3bl9_A Scavenger mRNA-decappin 99.4 3.8E-12 1.3E-16 93.6 11.7 99 17-119 139-249 (301)
27 1vlr_A MRNA decapping enzyme; 99.4 6.5E-12 2.2E-16 93.7 11.3 99 17-119 186-296 (350)
28 1z84_A Galactose-1-phosphate u 99.0 2.8E-09 9.6E-14 80.4 10.6 101 13-116 60-191 (351)
29 1gup_A Galactose-1-phosphate u 97.7 0.00029 9.9E-09 52.8 9.4 64 50-116 107-171 (348)
30 2pof_A CDP-diacylglycerol pyro 97.0 0.0025 8.6E-08 45.0 6.7 85 27-115 30-120 (227)
31 3vg8_G Hypothetical protein TT 83.2 2.7 9.1E-05 26.1 4.8 25 90-115 76-100 (116)
32 2cs7_A Pneumococcal histidine 48.2 5.4 0.00018 21.7 0.6 16 105-120 25-41 (55)
33 1ts9_A Ribonuclease P protein 42.2 31 0.001 21.0 3.5 28 28-60 35-62 (102)
34 1mg4_A Doublecortin, doublecor 41.2 26 0.00088 21.7 3.1 28 36-63 17-44 (113)
35 2f5g_A Transposase, putative; 37.6 48 0.0016 20.3 4.1 37 46-88 12-48 (133)
36 1v76_A RNAse P protein PH1771P 37.6 42 0.0015 20.1 3.6 33 28-66 37-69 (96)
37 3hfn_A ASL2047 protein; HFQ, S 37.4 22 0.00075 20.3 2.1 32 27-62 37-68 (72)
38 3jyw_9 60S ribosomal protein L 35.7 14 0.00048 21.1 1.1 18 2-21 17-34 (72)
39 2zae_A Ribonuclease P protein 33.2 45 0.0015 21.1 3.3 33 28-66 68-100 (127)
40 1wgy_A RAP guanine nucleotide 30.3 41 0.0014 20.5 2.7 23 47-69 77-99 (104)
41 3j21_i 50S ribosomal protein L 29.8 19 0.00063 21.2 1.0 18 2-21 26-43 (83)
42 3izc_m 60S ribosomal protein R 28.9 22 0.00076 21.3 1.2 18 2-21 27-44 (92)
43 3pqe_A L-LDH, L-lactate dehydr 28.8 43 0.0015 24.4 3.0 26 64-89 290-315 (326)
44 3hfo_A SSR3341 protein; HFQ, S 28.8 44 0.0015 18.9 2.4 31 27-61 35-65 (70)
45 1oqk_A Conserved protein MTH11 27.7 51 0.0017 19.7 2.7 35 28-66 36-70 (97)
46 3iz5_m 60S ribosomal protein L 25.7 24 0.00082 21.2 1.0 18 2-21 27-44 (92)
47 3sds_A Ornithine carbamoyltran 24.2 65 0.0022 24.0 3.3 38 45-85 12-49 (353)
48 2dhz_A RAP guanine nucleotide 23.7 54 0.0019 20.6 2.4 23 47-69 83-105 (120)
49 2vjv_A Transposase ORFA; DNA-b 22.7 1.5E+02 0.0053 18.7 4.7 36 47-88 21-56 (159)
50 2jvf_A De novo protein M7; tet 22.5 1.1E+02 0.0039 17.3 3.4 25 73-98 62-86 (96)
51 2ef0_A Ornithine carbamoyltran 22.5 94 0.0032 22.5 3.8 29 55-86 8-36 (301)
52 1ml4_A Aspartate transcarbamoy 21.6 76 0.0026 23.0 3.2 26 56-84 5-30 (308)
53 3gd5_A Otcase, ornithine carba 20.7 78 0.0027 23.2 3.1 29 55-86 12-40 (323)
54 1dxh_A Ornithine carbamoyltran 20.6 1.1E+02 0.0036 22.6 3.8 26 56-84 6-31 (335)
No 1
>3o1c_A Histidine triad nucleotide-binding protein 1; hydrolase, HINT protein, HIT protein, adenosine 5'- monophosphoramidase; HET: ADN; 1.08A {Oryctolagus cuniculus} SCOP: d.13.1.1 PDB: 3llj_A* 1rzy_A* 3qgz_A* 3o1z_A 3o1x_A* 4eqe_A* 4eqg_A* 4eqh_A* 3tw2_A* 1kpb_A 1kpf_A* 1kpa_A 1kpc_A 1av5_A* 1kpe_A* 4rhn_A* 3rhn_A* 5rhn_A* 6rhn_A
Probab=100.00 E-value=1.7e-45 Score=242.87 Aligned_cols=124 Identities=60% Similarity=1.097 Sum_probs=111.6
Q ss_pred chHhhhhccCCCCCCccccccccccCccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHHHHH
Q psy3327 2 SEVEKAAQAAPGGDTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTAS 81 (125)
Q Consensus 2 ~~~~~~~~~~~~~~C~fC~i~~~e~~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~ 81 (125)
+|+++++++..+++|+||+|+++|.++++||||+.++||.|.+|.++||+|||||+|+.++.+|+++|..++++++.+++
T Consensus 3 ~~~~~~~~~~~~~~CiFC~i~~~e~~~~iv~e~e~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~l~~~~~ 82 (126)
T 3o1c_A 3 DEIAKAQVARPGGDTIFGKIIRKEIPAKIIFEDDQALAFHDISPQAPTHFLVIPKKHISQISAAEDADESLLGHLMIVGK 82 (126)
T ss_dssp ---------CTTCSSHHHHHHHTSSCCCEEEECSSEEEEECSSCSSSEEEEEEESSCCCCGGGCCGGGHHHHHHHHHHHH
T ss_pred chhhcccccCCCCCCCcchhhcCCCcCCEEEECCCEEEEECCCCCCCceEEEEechHhchHhhCchhHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCeEEEEecCcCCCCccceeEEEEecCCCCCCCCC
Q psy3327 82 KLAKKQGLDNGYRLVVNNGRHGAQSVYHLHIHVMGGRQLRWPPG 125 (125)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~g~~~~~~v~HlH~HviPr~~~~w~~~ 125 (125)
+++++++.+++||+++|+|+.+||+++|+|+|||||++++||||
T Consensus 83 ~~~~~~~~~~g~ni~~n~g~~agq~v~HlH~Hiipr~~~~~~~~ 126 (126)
T 3o1c_A 83 KCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMNWPPG 126 (126)
T ss_dssp HHHHHTTCTTCEEEECCCHHHHTCCSSSCCEEEEESSCCCSSCC
T ss_pred HHHHHhCCCCCeEEEEecCCccCCccCEeEEEEeCCcccCCCCC
Confidence 99999887789999999999999999999999999999999998
No 2
>3n1s_A HIT-like protein HINT; histidine triad nucleotide binding protein, GMP, hydro; HET: 5GP; 1.45A {Escherichia coli} SCOP: d.13.1.0 PDB: 3n1t_A*
Probab=100.00 E-value=1.8e-40 Score=216.86 Aligned_cols=112 Identities=43% Similarity=0.878 Sum_probs=106.0
Q ss_pred CCCCccccccccccCccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHcCC-CC
Q psy3327 13 GGDTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQGL-DN 91 (125)
Q Consensus 13 ~~~C~fC~i~~~e~~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~~-~~ 91 (125)
+++|+||+|++||.++++||||+.++||.|.+|.++||+|||||+|++++.+|+++|..++++++..+++++++.+. ++
T Consensus 2 ~~~CiFC~I~~ge~~~~iv~ede~~~af~d~~P~~pgH~LViPk~Hv~~l~dL~~~e~~~l~~l~~~~~~v~~~~~~~~~ 81 (119)
T 3n1s_A 2 AEETIFSKIIRREIPSDIVYQDDLVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQALGRMITVAAKIAEQEGIAED 81 (119)
T ss_dssp CCCCHHHHHHTTSSCCCEEEECSSEEEEECSSCSSSEEEEEEESSCCCSGGGCCGGGHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred CCCChhhhhhcCCCcCCEEEECCCEEEEECCCCCCCCeEEEEehhHhCCHhHcCHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999998654 58
Q ss_pred CeEEEEecCcCCCCccceeEEEEecCCCCCCCC
Q psy3327 92 GYRLVVNNGRHGAQSVYHLHIHVMGGRQLRWPP 124 (125)
Q Consensus 92 ~~~~~~~~g~~~~~~v~HlH~HviPr~~~~w~~ 124 (125)
+||+++|+|+.+||+++|+|+|||||++++|+.
T Consensus 82 g~ni~~n~g~~agq~V~HlH~Hiipr~~~~~~~ 114 (119)
T 3n1s_A 82 GYRLIMNTNRHGGQEVYHIHMHLLGGRPLGPML 114 (119)
T ss_dssp CEEEEEEEHHHHTCCSSSCCEEEEESSCCCCSS
T ss_pred CeEEEEeCCCCcCCCcCEEEEEEeCCcccCccc
Confidence 999999999999999999999999999999875
No 3
>3oj7_A Putative histidine triad family protein; hydrolase, structural genomics, seattle structural genomics for infectious disease, ssgcid; 1.40A {Entamoeba histolytica} SCOP: d.13.1.0 PDB: 3omf_A* 3oxk_A*
Probab=100.00 E-value=5.1e-40 Score=213.97 Aligned_cols=111 Identities=43% Similarity=0.788 Sum_probs=102.6
Q ss_pred CCC-CccccccccccCccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHcCCCC
Q psy3327 13 GGD-TIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQGLDN 91 (125)
Q Consensus 13 ~~~-C~fC~i~~~e~~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~~~~ 91 (125)
+++ |+||+++++|.+.++||||++++||.|.+|.++||+||+||+|++++.+|+++|..++++++..+++++++ +..+
T Consensus 5 m~~~CiFC~i~~~e~~~~iv~e~~~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~l~~~~~~~~~~-~~~~ 83 (117)
T 3oj7_A 5 MADSCIFCKIAQKQIPSTIVYEDDEIFAFKDINPIAPIHILVIPKQHIASLNEITEENEAFIGKVLYKVSLIGKK-ECPE 83 (117)
T ss_dssp ----CHHHHHHTTSSCCCEEEECSSEEEEECSSCSSSEEEEEEESSCCCSGGGCCTTTHHHHHHHHHHHHHHHHH-HCTT
T ss_pred cCCCCcccccccCCCCCCEEEECCcEEEEECCCCCCCceEEEEechHhCCHHHCCHHHHHHHHHHHHHHHHHHHh-cCCC
Confidence 345 99999999999899999999999999999999999999999999999999999999999999999999887 3335
Q ss_pred CeEEEEecCcCCCCccceeEEEEecCCCCCCCC
Q psy3327 92 GYRLVVNNGRHGAQSVYHLHIHVMGGRQLRWPP 124 (125)
Q Consensus 92 ~~~~~~~~g~~~~~~v~HlH~HviPr~~~~w~~ 124 (125)
+||+++|+|+.+||+++|+|+|||||++++||+
T Consensus 84 g~ni~~n~g~~agq~v~H~H~Hiipr~~~~~~~ 116 (117)
T 3oj7_A 84 GYRVVNNIGEDAGQTVKHIHFHILGGKKLAWDK 116 (117)
T ss_dssp CEEEECCCSTTTTCCSSSCCEEEEESSCCCCCC
T ss_pred CeEEEEcCCCCCCeeeeEEEEEEeCCCCCCCCC
Confidence 999999999999999999999999999999996
No 4
>1xqu_A HIT family hydrolase; protein STRU initiative, PSI, southeast collaboratory for structural GEN secsg; 2.30A {Clostridium thermocellum} SCOP: d.13.1.1
Probab=100.00 E-value=9.5e-39 Score=215.53 Aligned_cols=114 Identities=35% Similarity=0.692 Sum_probs=106.9
Q ss_pred CCCCCCccccccccccCccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHcCC-
Q psy3327 11 APGGDTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQGL- 89 (125)
Q Consensus 11 ~~~~~C~fC~i~~~e~~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~~- 89 (125)
.++++|+||+++++|.+.++||||+.++||.|.+|.++||+||+||+|+.++.+|+++|..++++++.++++++++++.
T Consensus 32 ~~m~~CiFC~ii~~e~~~~iV~e~e~~~af~d~~P~~pgH~LViPkrHv~~l~dL~~~e~~~l~~l~~~~~~v~~~~~~~ 111 (147)
T 1xqu_A 32 YTLENCVFCKIIKRELPSTIYYEDERVIAIKDINPAAPVHVLIIPKEHIANVKEINESNAQILIDIHKAANKVAEDLGIA 111 (147)
T ss_dssp --CTTCHHHHHHTTSSCBCEEEECSSEEEEECSSCSSSEEEEEEESSCCSSGGGCCTTTTTHHHHHHHHHHHHHHHTTCT
T ss_pred hccCCCcccccccCCCCcEEEEECCcEEEEEecCCCCccEEEEEeCcccCChhHCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3467899999999999999999999999999999999999999999999999999999988899999999999999875
Q ss_pred CCCeEEEEecCcCCCCccceeEEEEecCCCCCCCC
Q psy3327 90 DNGYRLVVNNGRHGAQSVYHLHIHVMGGRQLRWPP 124 (125)
Q Consensus 90 ~~~~~~~~~~g~~~~~~v~HlH~HviPr~~~~w~~ 124 (125)
+++||+++|+|+.+||+++|+|+|||||++++||+
T Consensus 112 ~~gyni~~n~g~~aGq~v~HlHlHiiP~~~~~wp~ 146 (147)
T 1xqu_A 112 EKGYRLITNCGVAAGQTVFHLHYHLLGGVDMGPKI 146 (147)
T ss_dssp TTCEEEECCCSTTTTCCSCSCCEEEEESSCCCSCC
T ss_pred CCCEEEEEecCcccCCCccEEEEEEeCCCcCCCCC
Confidence 47999999999999999999999999999999996
No 5
>4egu_A Histidine triad (HIT) protein; structural genomics, center for structural genomics of infec diseases, csgid, HIT domain, unknown function; HET: 5GP; 0.95A {Clostridium difficile}
Probab=100.00 E-value=2.5e-38 Score=206.48 Aligned_cols=111 Identities=41% Similarity=0.730 Sum_probs=104.0
Q ss_pred CCCCccccccccccCccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHcCC-CC
Q psy3327 13 GGDTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQGL-DN 91 (125)
Q Consensus 13 ~~~C~fC~i~~~e~~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~~-~~ 91 (125)
+++|+||+++++|.++++||||+.++||.|.+|.++||+||+||+|+.++.+|+++|..++++++.+++++++.++. ++
T Consensus 3 ~~~C~FC~i~~~e~~~~iv~e~e~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~~~~~~~~~~~~~~~~~~ 82 (119)
T 4egu_A 3 RMDCIFCKIANGEIPSTKVYEDDRVLAFNDLNPVAPYHILVVPKKHYDSLIDIPDKEMDIVSHIHVVINKIAKEKGFDQT 82 (119)
T ss_dssp CTTCHHHHHHTTSSCCCEEEECSSEEEEECSSCSSSEEEEEEESSCCSSGGGSCGGGTHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CCCccCeecccCCCCCCEEEECCCEEEEECCCCCCCceEEEEechhhCCHhHCCHhHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 46899999999999999999999999999999999999999999999999999999998999999999999998763 47
Q ss_pred CeEEEEecCcCCCCccceeEEEEecCCCCCCC
Q psy3327 92 GYRLVVNNGRHGAQSVYHLHIHVMGGRQLRWP 123 (125)
Q Consensus 92 ~~~~~~~~g~~~~~~v~HlH~HviPr~~~~w~ 123 (125)
+||+++|+|+.+||+++|+|+|||||++++|.
T Consensus 83 ~~ni~~n~g~~agq~v~HlH~Hiip~~~~~~~ 114 (119)
T 4egu_A 83 GFRVINNCGSDGGQEVKHLHYHILAGKKLPNY 114 (119)
T ss_dssp CEEEEEEETTTTTCCSCSCCEEEEESSCCCCG
T ss_pred CEEEEEeCCCCCCCCcCEEEEEEeCCcccCcc
Confidence 99999999999999999999999999998763
No 6
>3l7x_A SMU.412C, putative HIT-like protein involved in cell-cycle regulation; 1.70A {Streptococcus mutans}
Probab=100.00 E-value=5.4e-36 Score=206.85 Aligned_cols=118 Identities=26% Similarity=0.374 Sum_probs=100.7
Q ss_pred CchHhhhhccC-CCCCCccccccccccCccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHH-
Q psy3327 1 MSEVEKAAQAA-PGGDTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMV- 78 (125)
Q Consensus 1 ~~~~~~~~~~~-~~~~C~fC~i~~~e~~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~- 78 (125)
|||+.+.++.. .+++|+||+|+++|.+.++||||+.++||.|.+|.++||+|||||+|+.++.+|+++++..|..++.
T Consensus 22 ~~~~~~~~~~~~~m~~CiFC~Ii~~e~p~~iV~e~e~~~afld~~P~~pgH~LVIPkrHv~~l~dL~~ee~~~L~~~~~~ 101 (173)
T 3l7x_A 22 ASMTGGQQMGRGSMNDCLFCKIVAGDIPSSKVYEDEDVLAFLDISQATKGHTLVIPKEHVRNALEMTQTQAANLFARIPK 101 (173)
T ss_dssp BCTTSSBCCC-CCCTTCHHHHHHHTSSCCCEEEECSSEEEEECTTCSSTTCEEEEESSCCSCGGGCCHHHHHHHHHTHHH
T ss_pred hhhcccccccCCCCCCCcccccccCCCCceEEEECCCEEEEEcCCCCCCcEEEEEeccccCChhhCCHHHHHHHHHHHHH
Confidence 57888888875 4688999999999999999999999999999999999999999999999999999988655544443
Q ss_pred HHHHHHHHcCCCCCeEEEEecCcCCCCccceeEEEEecCCC
Q psy3327 79 TASKLAKKQGLDNGYRLVVNNGRHGAQSVYHLHIHVMGGRQ 119 (125)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~HlH~HviPr~~ 119 (125)
+++++.+.++ +++||+++|+|+.+||+++|+|+|||||+.
T Consensus 102 v~~~l~~~~~-~~g~ni~~n~g~~aGq~V~HlHiHiIPR~~ 141 (173)
T 3l7x_A 102 IARALQKATK-ADGLNIINNNEETAGQTVFHAHVHLVPRFA 141 (173)
T ss_dssp HHHHHHHHHT-CSEEEEEECCSGGGTCCSCSCCEEEEEECC
T ss_pred HHHHHHHhcC-CCCEEEEEecCcccCCCcCEEEEEEEeccc
Confidence 3333333344 589999999999999999999999999975
No 7
>3ksv_A Uncharacterized protein; HIT family, structural genomics, structural genomics of PATH protozoa consortium, SGPP, unknown function; 1.90A {Leishmania major} SCOP: d.13.1.0
Probab=100.00 E-value=3.5e-35 Score=198.53 Aligned_cols=103 Identities=34% Similarity=0.553 Sum_probs=92.4
Q ss_pred CCCccccccccccCccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHcC---CC
Q psy3327 14 GDTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQG---LD 90 (125)
Q Consensus 14 ~~C~fC~i~~~e~~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~---~~ 90 (125)
.+|+||+|++||.++++||||+.++||.|.+|.++||+||+||+|+.++.+|++++ +.+++.++++++++++ .+
T Consensus 11 ~~~iFc~Ii~geip~~iV~ed~~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e---~~~l~~~~~~v~~~l~~~~~~ 87 (149)
T 3ksv_A 11 ANCIFCKIIKGDIPCAKVAETSKALAFMDINPLSRGHMLVIPKEHASCLHELGMED---AADVGVLLAKASRAVAGPDGS 87 (149)
T ss_dssp TTCHHHHHHHTSSCCCEEEECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCHHH---HHHHHHHHHHHHHHHHCTTSC
T ss_pred ccCHHHHHHcCCCCccEEEECCCEEEEECCCCCCCCEEEEEeChhhhhhhhCCHHH---HHHHHHHHHHHHHHHHHhhCC
Confidence 57999999999999999999999999999999999999999999999999999987 4556666667776653 25
Q ss_pred CCeEEEEecCcCCCCccceeEEEEecCCC
Q psy3327 91 NGYRLVVNNGRHGAQSVYHLHIHVMGGRQ 119 (125)
Q Consensus 91 ~~~~~~~~~g~~~~~~v~HlH~HviPr~~ 119 (125)
++||+++|+|+.+||+++|+|+|||||+.
T Consensus 88 ~g~ni~~n~g~~aGq~v~HlHiHiiPR~~ 116 (149)
T 3ksv_A 88 MQYNVLQNNGSLAHQEVPHVHFHIIPKTD 116 (149)
T ss_dssp CEEEEEECCSTTTTCCSSSCCEEEEEECC
T ss_pred CCEEEEEecCcccCCCCCEEEEEEEeccc
Confidence 79999999999999999999999999965
No 8
>3o0m_A HIT family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, hydrola structural genomics; HET: AMP; 1.90A {Mycobacterium smegmatis str}
Probab=100.00 E-value=1.1e-34 Score=195.99 Aligned_cols=108 Identities=25% Similarity=0.408 Sum_probs=92.2
Q ss_pred CCCCCccccccccccCccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHc-CCC
Q psy3327 12 PGGDTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQ-GLD 90 (125)
Q Consensus 12 ~~~~C~fC~i~~~e~~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~-~~~ 90 (125)
.+++|+||++++++.+.++|||++.++||.|.+|.++||+|||||+|+.++.+|+++++..|.+++..+.+.+++. ..+
T Consensus 3 ~m~~CiFC~i~~~e~~~~iv~e~~~~~af~d~~p~~pgh~lViPk~H~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~ 82 (149)
T 3o0m_A 3 GSMSCVFCAIVSGDAPAIRIYEDENFLGILDIRPFTRGHTLVIPKTHTVDLTDTPPETVAGMAAVGQRIARAARESGLHA 82 (149)
T ss_dssp CTTTCHHHHHHTTSSCCCEEEECSSEEEEECSSCSSTTCEEEEESSCCCSTTTSCHHHHHHHHHHHHHHHHHHHHSTTCC
T ss_pred CCCCCccCccccCCCCCCEEEECCCEEEEEcCCCCCCCeEEEEechhhCCHhHCCHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3578999999999999999999999999999999999999999999999999999988655555544333333333 235
Q ss_pred CCeEEEEecCcCCCCccceeEEEEecCCC
Q psy3327 91 NGYRLVVNNGRHGAQSVYHLHIHVMGGRQ 119 (125)
Q Consensus 91 ~~~~~~~~~g~~~~~~v~HlH~HviPr~~ 119 (125)
++||+++|+|+.+||+++|+|+|||||+.
T Consensus 83 ~~~ni~~n~g~~aGq~v~HlHiHiiPR~~ 111 (149)
T 3o0m_A 83 DGNNIAINDGKAAFQTVFHIHLHVVPRRN 111 (149)
T ss_dssp SEEEEECCCSGGGTCCSSSCCEEEEEECT
T ss_pred CceEEEEecCCCCCCccceEEEEEECCcc
Confidence 79999999999999999999999999964
No 9
>3lb5_A HIT-like protein involved in cell-cycle regulatio; niaid, seattle structural genomics center for infectious DIS ssgcid, histidine triad; 1.90A {Bartonella henselae}
Probab=100.00 E-value=3.1e-34 Score=196.05 Aligned_cols=108 Identities=34% Similarity=0.496 Sum_probs=92.0
Q ss_pred CCCCCCccccccccccCccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHH-HHHHHHHHcCC
Q psy3327 11 APGGDTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMV-TASKLAKKQGL 89 (125)
Q Consensus 11 ~~~~~C~fC~i~~~e~~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~-~~~~~~~~~~~ 89 (125)
..+++|+||+|+++|.++++||||+.|+||.|.+|.++||+|||||+|+.++.+|+++++..|.+++. +++++.+.++
T Consensus 25 ~~~~~CiFC~i~~~e~p~~iV~e~e~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~ee~~~l~~~~~~v~~~l~~~~~- 103 (161)
T 3lb5_A 25 AYDNNNIFAKLIRNEIPSVRVYEDDDVIAFMDIMPQAPGHTLVIPKKGSRNLLDADTETLFPVIKAVQKIAKAVKKAFQ- 103 (161)
T ss_dssp CCCTTSHHHHHHTTSSCCCEEEECSSEEEEECSSCSSTTCEEEEESSCCSSTTTSCHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred CCCCCCcccccccCCCCccEEEECCCEEEEECCCcCCCcEEEEEEeeccchhhhCCHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 35678999999999999999999999999999999999999999999999999999987655444443 2222222334
Q ss_pred CCCeEEEEecCcCCCCccceeEEEEecCCC
Q psy3327 90 DNGYRLVVNNGRHGAQSVYHLHIHVMGGRQ 119 (125)
Q Consensus 90 ~~~~~~~~~~g~~~~~~v~HlH~HviPr~~ 119 (125)
+++||+++|+|+.+||+++|+|+|||||+.
T Consensus 104 ~~g~ni~~n~g~~aGq~V~HlHiHiiPR~~ 133 (161)
T 3lb5_A 104 ADGITVMQFNEAASQQTVYHLHFHIIPRME 133 (161)
T ss_dssp CSEEEEEEEESGGGTCCSCSCCEEEEEECT
T ss_pred CCCEEEEEecCcccCCCCCEEEEEEEcccC
Confidence 579999999999999999999999999964
No 10
>3imi_A HIT family protein; structural genomics, infectious diseases for structural genomics of infectious diseases, unknown FUN csgid; 2.01A {Bacillus anthracis str} SCOP: d.13.1.1
Probab=100.00 E-value=2.1e-34 Score=194.25 Aligned_cols=107 Identities=27% Similarity=0.435 Sum_probs=92.4
Q ss_pred CCCCCccccccccccCccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHH-HHHHHHHHcCCC
Q psy3327 12 PGGDTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMV-TASKLAKKQGLD 90 (125)
Q Consensus 12 ~~~~C~fC~i~~~e~~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~-~~~~~~~~~~~~ 90 (125)
.+++|+||+++++|.++++|||++.++||.|.+|.++||+|||||+|+.++.+|+++++..|.+++. +++++.+.++ +
T Consensus 7 ~m~~CifC~i~~~e~~~~iV~e~~~~~a~~d~~p~~pgh~lViPk~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~-~ 85 (147)
T 3imi_A 7 TADNCIFCKIIDGQILCSKVYEDEHVLAFLDISQVTKGHTLVIPKVHKQDIFALTPEIASHIFSVVPKIANAIKAEFN-P 85 (147)
T ss_dssp CGGGCHHHHHHTTSSCCCEEEECSSEEEEECTTCSSTTCEEEEESSCCCSGGGCCHHHHHHHHHTHHHHHHHHHHHHC-C
T ss_pred ccCCCcCcccccCCCcCCEEEECCCEEEEEcCCCCCCcEEEEEEeeccCChhhCCHHHHHHHHHHHHHHHHHHHHhcC-C
Confidence 4578999999999999999999999999999999999999999999999999999998655555443 3333333345 5
Q ss_pred CCeEEEEecCcCCCCccceeEEEEecCCC
Q psy3327 91 NGYRLVVNNGRHGAQSVYHLHIHVMGGRQ 119 (125)
Q Consensus 91 ~~~~~~~~~g~~~~~~v~HlH~HviPr~~ 119 (125)
++||+++|+|+.+||+++|+|+|||||+.
T Consensus 86 ~~~ni~~n~g~~aGq~v~HlHiHiiPR~~ 114 (147)
T 3imi_A 86 VGFNLLNNNGEKAGQTVFHFHLHLIPRYG 114 (147)
T ss_dssp SEEEEEEEESGGGTCCSSSCCEEEEEECS
T ss_pred CCEEEEEeCCcccCCCcCEEEEEEeCCcc
Confidence 89999999999999999999999999976
No 11
>2eo4_A 150AA long hypothetical histidine triad nucleotid protein; HIT family, structural genomics, NPPSFA; 1.80A {Sulfolobus tokodaii}
Probab=100.00 E-value=5e-33 Score=187.69 Aligned_cols=104 Identities=31% Similarity=0.457 Sum_probs=88.6
Q ss_pred CccccccccccCccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHcCCCCCeEE
Q psy3327 16 TIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQGLDNGYRL 95 (125)
Q Consensus 16 C~fC~i~~~e~~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~ 95 (125)
|+||++++++.+.++|||++.++||.|.+|.++||+||+||+|+.++.+|+++++..|..++..+.+.++....+++||+
T Consensus 1 CiFC~i~~~e~~~~iv~e~~~~~a~~d~~p~~pgh~lViPk~H~~~~~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni 80 (149)
T 2eo4_A 1 CTFCSIINRELEGYFVYEDEKFAAILDKYPVSLGHTLVIPKKHFENYLEADEDTLAELAKVVKLVSLGIKDAVKADGLRL 80 (149)
T ss_dssp CHHHHHHTTSSCCCEEEECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEE
T ss_pred CcCcccccCCCCccEEEECCCEEEEECCCCCCCCeEEEEechhhCCHhHCCHHHHHHHHHHHHHHHHHHHHhcCCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999866555554422222222222579999
Q ss_pred EEecCcCCCCccceeEEEEecCCC
Q psy3327 96 VVNNGRHGAQSVYHLHIHVMGGRQ 119 (125)
Q Consensus 96 ~~~~g~~~~~~v~HlH~HviPr~~ 119 (125)
++|+|+.+||+++|+|+|||||+.
T Consensus 81 ~~n~g~~~gq~v~HlHiHviPr~~ 104 (149)
T 2eo4_A 81 LTNIGRSAGQVIFHLHVHIIPTWE 104 (149)
T ss_dssp ECCCSGGGTCCSCSCCEEEEEECS
T ss_pred EEecCcCCCCCcCEEEEEEECCcC
Confidence 999999999999999999999964
No 12
>1y23_A HIT, histidine triad protein; HIT protein, PKCI-1, cell-cycle regulation, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Bacillus subtilis} SCOP: d.13.1.1
Probab=100.00 E-value=1.3e-33 Score=189.63 Aligned_cols=105 Identities=31% Similarity=0.446 Sum_probs=90.1
Q ss_pred CCCccccccccccCccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHH-HHHHHHHHcCCCCC
Q psy3327 14 GDTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMV-TASKLAKKQGLDNG 92 (125)
Q Consensus 14 ~~C~fC~i~~~e~~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~-~~~~~~~~~~~~~~ 92 (125)
++|+||++++++.+.++|||++.++||.|.+|.++||+||+||+|+.++.+|+++++..|.+++. +++++.+.++ +++
T Consensus 5 ~~C~fC~i~~~e~~~~iv~e~~~~~a~~~~~p~~pgh~LViPk~h~~~l~dL~~~~~~~l~~~~~~v~~~l~~~~~-~~~ 83 (145)
T 1y23_A 5 ENCIFCKIIAGDIPSAKVYEDEHVLAFLDISQVTKGHTLVIPKTHIENVYEFTDELAKQYFHAVPKIARAIRDEFE-PIG 83 (145)
T ss_dssp CCCHHHHHHHTSSCCCEEEECSSEEEEECTTCSSTTCEEEEESSCCSSGGGCCHHHHHTTTTHHHHHHHHHHHHHC-CSE
T ss_pred CCCcCCccccCCCCCCEEEECCCEEEEECCCCCCCCeEEEEEhhhhhhHHhCCHHHHHHHHHHHHHHHHHHHHhcC-CCC
Confidence 57999999999999999999999999999999999999999999999999999998655554444 3333333334 479
Q ss_pred eEEEEecCcCCCCccceeEEEEecCCC
Q psy3327 93 YRLVVNNGRHGAQSVYHLHIHVMGGRQ 119 (125)
Q Consensus 93 ~~~~~~~g~~~~~~v~HlH~HviPr~~ 119 (125)
||+++|+|+.+||+++|+|+|||||+.
T Consensus 84 ~ni~~n~g~~~g~~v~HlH~HiiPr~~ 110 (145)
T 1y23_A 84 LNTLNNNGEKAGQSVFHYHMHIIPRYG 110 (145)
T ss_dssp EEEEEEESGGGTCCSSSCCEEEEEECS
T ss_pred EEEEEcCCcCCCCCcCEEEEEEEcccc
Confidence 999999999999999999999999964
No 13
>3r6f_A HIT family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, protozoan parasite; 1.85A {Encephalitozoon cuniculi}
Probab=100.00 E-value=2.1e-33 Score=186.93 Aligned_cols=100 Identities=34% Similarity=0.494 Sum_probs=88.9
Q ss_pred CCCCCccccccccccCccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHcCCCC
Q psy3327 12 PGGDTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQGLDN 91 (125)
Q Consensus 12 ~~~~C~fC~i~~~e~~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~~~~ 91 (125)
.+++|+||++++ .+.++||||+.++||.|.+|.++||+||+||+|+.++.+|++++ +.+++.+++++.++++. +
T Consensus 4 ~~~~C~fC~i~~--~~~~iv~e~~~~~af~d~~p~~pgh~lViPk~H~~~l~dL~~~~---~~~l~~~~~~v~~~~~~-~ 77 (135)
T 3r6f_A 4 SMEGCIFCTLYR--KGANIIYETDRLFALIDRYPLSKGHFLVIPKAHHPYLHNYKPEE---LSGVLDTIRHLVQKFGF-E 77 (135)
T ss_dssp --CCCHHHHHHH--HCCSCCEECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCGGG---GTTHHHHHHHHHHHHTC-C
T ss_pred CCCCCcCccccc--CCceEEEECCCEEEEECCCCCCCCeEEEEEhhHhCCHhHCCHHH---HHHHHHHHHHHHHHhCC-C
Confidence 467899999987 67799999999999999999999999999999999999999997 45566667788888874 6
Q ss_pred CeEEEEecCcCCCCccceeEEEEecCCC
Q psy3327 92 GYRLVVNNGRHGAQSVYHLHIHVMGGRQ 119 (125)
Q Consensus 92 ~~~~~~~~g~~~~~~v~HlH~HviPr~~ 119 (125)
+||+++|+|+ ||+++|+|+|||||+.
T Consensus 78 ~~ni~~n~g~--gq~v~HlH~HiiPR~~ 103 (135)
T 3r6f_A 78 RYNILQNNGN--HQEVFHVHFHVIPFVS 103 (135)
T ss_dssp SEEEECCSSS--SCSSSSCCEEEEECCB
T ss_pred CeEEEEEcCC--CCCccEEEEEEecccc
Confidence 8999999998 9999999999999964
No 14
>3ano_A AP-4-A phosphorylase; diadenosine polyphosphate, HIT transferase; HET: PG4; 1.89A {Mycobacterium tuberculosis}
Probab=100.00 E-value=3.3e-33 Score=198.84 Aligned_cols=123 Identities=20% Similarity=0.267 Sum_probs=98.0
Q ss_pred CchHhhhhcc-----CCCCCCccccccccc-cCccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHH
Q psy3327 1 MSEVEKAAQA-----APGGDTIFGRILRKE-IPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILG 74 (125)
Q Consensus 1 ~~~~~~~~~~-----~~~~~C~fC~i~~~e-~~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~ 74 (125)
|+|++..... ...++|+||++++++ .+..+|||++.++||++.+|.++||+|||||+|+.++.+|++++...|.
T Consensus 51 ~~y~~~~~~~~~~~~~~~~~CiFC~i~~~e~~~~~iV~edd~~~afld~~P~~pGH~LVIPkrHv~~l~dL~~ee~~~L~ 130 (218)
T 3ano_A 51 MNYLAEAPVKRDPNSSASPAQPFTEIPQLSDEEGLVVARGKLVYAVLNLYPYNPGHLMVVPYRRVSELEDLTDLESAELM 130 (218)
T ss_dssp -------------------CCHHHHGGGSCHHHHTEEEECSSEEEEECSSCSSTTCEEEEESSCCCCGGGSCHHHHHHHH
T ss_pred HHHhcCCCcccccccCCCCCCcCcccccCCCCCceEEEECCcEEEEEccCCCCCcEEEEEechhhCChhhCCHHHHHHHH
Confidence 5677544331 245689999999884 6679999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHcCCCCCeEEEEecCcCCCCcc-ceeEEEEecCCCC--CCC
Q psy3327 75 HLMVTASKLAKKQGLDNGYRLVVNNGRHGAQSV-YHLHIHVMGGRQL--RWP 123 (125)
Q Consensus 75 ~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v-~HlH~HviPr~~~--~w~ 123 (125)
+++..+.+++++...+++||+++|+|+.+|+++ +|+|+|||||... +|+
T Consensus 131 ~l~~~v~~~l~~~~~~~g~ni~~n~G~~aGq~V~~HlHiHIIPR~~gd~~f~ 182 (218)
T 3ano_A 131 AFTQKAIRVIKNVSRPHGFNVGLNLGTSAGGSLAEHLHVHVVPRWGGDANFI 182 (218)
T ss_dssp HHHHHHHHHHHHHCCCSEEEEEEEESGGGTCTTTTSCCEEEEEECTTGGGCC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEecCcccCCcccCEEEEEEEcccCCCCCcc
Confidence 888877777777655689999999999999999 9999999999653 454
No 15
>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium paratuberculosis, STR genomics; 1.90A {Mycobacterium avium subsp}
Probab=99.97 E-value=8.3e-32 Score=179.64 Aligned_cols=102 Identities=29% Similarity=0.444 Sum_probs=83.4
Q ss_pred CCCCccccccccccCccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHH-HHHHHHHHcCCCC
Q psy3327 13 GGDTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMV-TASKLAKKQGLDN 91 (125)
Q Consensus 13 ~~~C~fC~i~~~e~~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~-~~~~~~~~~~~~~ 91 (125)
.++|+||+|++||.++++||||+.++||.|.+|.++||+|||||+|+.++.+|+++++..+.+++. +++++.+.++ ++
T Consensus 4 ~~~CiFC~i~~~e~p~~iV~e~~~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~-~~ 82 (138)
T 3p0t_A 4 SMASIFTKIINRELPGRFVYEDDDVVAFLTIEPMTQGHTLVVPREEIDNWQDVDSAAFNRVMGVSQLIGKAVCKAFR-TE 82 (138)
T ss_dssp CHHHHHHHHHTTSSCCCEEEECSSEEEEECSSCSSTTCEEEEESSCCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHT-CS
T ss_pred CCCChhhHHhcCCCCcCEEEeCCCEEEEecCCCCCCcEEEEEEhHHhCchhhCCHHHHHHHHHHHHHHHHHHHHhcC-CC
Confidence 357999999999999999999999999999999999999999999999999999987655444443 3333333344 46
Q ss_pred CeEEEEecCcCCCCccceeEEEEecCCCC
Q psy3327 92 GYRLVVNNGRHGAQSVYHLHIHVMGGRQL 120 (125)
Q Consensus 92 ~~~~~~~~g~~~~~~v~HlH~HviPr~~~ 120 (125)
++|+. .+||+++|+|+|||||+..
T Consensus 83 ~~n~~-----~~gq~v~HlH~HiiPr~~~ 106 (138)
T 3p0t_A 83 RSGLI-----IAGLEVPHLHVHVFPTRSL 106 (138)
T ss_dssp EEEEE-----ECCSSCSSCCEEEEEESCG
T ss_pred CCcEE-----ECCcccCEEEEEEeccccC
Confidence 77764 2789999999999999763
No 16
>2oik_A Histidine triad (HIT) protein; HIT-like fold, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.65A {Methylobacillus flagellatus} SCOP: d.13.1.1
Probab=99.96 E-value=1.2e-28 Score=167.09 Aligned_cols=103 Identities=14% Similarity=0.175 Sum_probs=82.9
Q ss_pred CCCCCCccccccccccCccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHH-cCC
Q psy3327 11 APGGDTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKK-QGL 89 (125)
Q Consensus 11 ~~~~~C~fC~i~~~e~~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~-~~~ 89 (125)
..+++|+||++ .++++|||++.++||.+.+|.++||+||+||+|+.++.+|++++...|.+++..+.+.+++ ++
T Consensus 7 ~~~~~C~FC~~----~~~~iv~e~~~~~a~~d~~p~~pgh~LViPk~H~~~l~dL~~~~~~~l~~~~~~v~~~l~~~~~- 81 (154)
T 2oik_A 7 SFHKNCELCTT----AGGEILWQDALCRVVHVENQDYPGFCRVILNRHVKEMSDLRPAERDHLMLVVFAVEEAVREVMR- 81 (154)
T ss_dssp CCCTTCHHHHS----CCSEEEEECSSEEEEECCCTTCTTCEEEEESSCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCccCCC----CCCeEEEECCcEEEEEcCCCCCCeEEEEEecCCcCChHHCCHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 35678999984 3568999999999999999999999999999999999999999876666655533333333 34
Q ss_pred CCCeEEEEecCcCCCCccceeEEEEecCCCC--CCC
Q psy3327 90 DNGYRLVVNNGRHGAQSVYHLHIHVMGGRQL--RWP 123 (125)
Q Consensus 90 ~~~~~~~~~~g~~~~~~v~HlH~HviPr~~~--~w~ 123 (125)
+++||+. .+||+++|+|+|||||+.. +||
T Consensus 82 ~~g~ni~-----~~gq~v~HlHiHiiPr~~~d~~~~ 112 (154)
T 2oik_A 82 PDKINLA-----SLGNMTPHVHWHVIPRFKRDRHFP 112 (154)
T ss_dssp CSEEEEE-----ECCSSSCSCEEEEEEECTTSSSTT
T ss_pred CCcEEhH-----HhCCCCCEEEEEEeCCCCCCCCCC
Confidence 4789886 2689999999999999753 565
No 17
>1fit_A FragIle histidine protein; FHIT, fragIle histidine triad protein, putative human tumor suppressor, advanced photon source, APS; HET: FRU; 1.85A {Homo sapiens} SCOP: d.13.1.1 PDB: 1fhi_A* 2fit_A* 3fit_A* 4fit_A 5fit_A* 6fit_A* 2fhi_A*
Probab=99.96 E-value=1.3e-28 Score=165.75 Aligned_cols=103 Identities=19% Similarity=0.324 Sum_probs=82.4
Q ss_pred ccccccccccCccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHc---CCCCCe
Q psy3327 17 IFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQ---GLDNGY 93 (125)
Q Consensus 17 ~fC~i~~~e~~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~---~~~~~~ 93 (125)
.||.+. -.+.++|||++.++||.|.+|.++||+|||||+|+.++.+|+++++..+..++ +++.+++ ..+++|
T Consensus 4 ~f~~~~--ip~~~iv~e~~~~~a~~d~~p~~pgh~LViPk~h~~~~~dL~~~e~~~l~~~~---~~v~~~l~~~~~~~~~ 78 (147)
T 1fit_A 4 RFGQHL--IKPSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTT---QRVGTVVEKHFHGTSL 78 (147)
T ss_dssp EETTEE--ECGGGEEEECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHHHHH---HHHHHHHHHHTTCSEE
T ss_pred EecCcc--cCCcEEEEECCCEEEEECCCCCCCcEEEEEEccccCChhhCCHHHHHHHHHHH---HHHHHHHHHhcCCCCE
Confidence 467652 12358999999999999999999999999999999999999999865544444 4444443 235799
Q ss_pred EEEEecCcCCCCccceeEEEEecCCCCCCCC
Q psy3327 94 RLVVNNGRHGAQSVYHLHIHVMGGRQLRWPP 124 (125)
Q Consensus 94 ~~~~~~g~~~~~~v~HlH~HviPr~~~~w~~ 124 (125)
|+++|+|+.+||+++|+|+|||||+..+|+.
T Consensus 79 ni~~n~g~~agq~v~HlH~HiiPr~~~d~~~ 109 (147)
T 1fit_A 79 TFSMQDGPEAGQTVKHVHVHVLPRKAGDFHR 109 (147)
T ss_dssp EEEECCSGGGTCCSSSCCEEEEEECTTC---
T ss_pred EEEEecCCccCCCccEEEEEEECCcCCCCCC
Confidence 9999999999999999999999998876543
No 18
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1
Probab=99.95 E-value=2.1e-27 Score=183.50 Aligned_cols=104 Identities=25% Similarity=0.416 Sum_probs=88.0
Q ss_pred CCCCccccccccccCc-cEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHc---C
Q psy3327 13 GGDTIFGRILRKEIPC-NFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQ---G 88 (125)
Q Consensus 13 ~~~C~fC~i~~~e~~~-~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~---~ 88 (125)
.+.|+||+ ++.++ ++||||++++||.|.+|.++||+|||||+|+.++.+|++++...|..+ ++++.+++ .
T Consensus 296 ~~~c~fc~---~e~p~~~iv~e~~~~~a~~~~~p~~pgh~lviPk~h~~~~~~l~~~~~~~l~~~---~~~v~~~l~~~~ 369 (440)
T 1ems_A 296 TGGLKFAR---FNIPADHIFYSTPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDAETADLFIV---AKKVQAMLEKHH 369 (440)
T ss_dssp SSCCEETT---EECCGGGEEEECSSEEEEECSSCSSTTCEEEEESSCCSCGGGSCHHHHHHHHHH---HHHHHHHHHHHT
T ss_pred cCceeeec---cccCCceEEEECCCEEEEEcCCcCCCCeEEEEEccccCChhHCCHHHHHHHHHH---HHHHHHHHHhhc
Confidence 57899999 56665 799999999999999999999999999999999999999885544444 44444443 2
Q ss_pred CCCCeEEEEecCcCCCCccceeEEEEecCCCCCC
Q psy3327 89 LDNGYRLVVNNGRHGAQSVYHLHIHVMGGRQLRW 122 (125)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~v~HlH~HviPr~~~~w 122 (125)
.+++||+++|+|+.+||+++|+|+|||||++.+|
T Consensus 370 ~~~~~n~~~~~g~~~gq~v~HlH~Hiipr~~~d~ 403 (440)
T 1ems_A 370 NVTSTTICVQDGKDAGQTVPHVHIHILPRRAGDF 403 (440)
T ss_dssp TCSEEEEECCCSGGGTCCSSSCCEEEEEECSSCC
T ss_pred CCCCeEEEEecCCCCCCCccEEEEEEeCCCCCCC
Confidence 2579999999999999999999999999987654
No 19
>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase, galactose metabolism; HET: GDU; 1.80A {Escherichia coli} SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A*
Probab=99.94 E-value=6.9e-27 Score=176.44 Aligned_cols=113 Identities=12% Similarity=0.187 Sum_probs=95.7
Q ss_pred CCCCccccccccccCc--cEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHH-HHHHHHHHcCC
Q psy3327 13 GGDTIFGRILRKEIPC--NFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMV-TASKLAKKQGL 89 (125)
Q Consensus 13 ~~~C~fC~i~~~e~~~--~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~-~~~~~~~~~~~ 89 (125)
.++|+||+++++|.+. ++|+||++|+||.+.+|.++||+||+||+|+.++.+|++++...|++++. +++++.+.++.
T Consensus 193 ~~~Cifc~ii~~E~~~~~~iV~E~e~~~af~~~~p~~pgh~lViPK~Hv~~l~dL~~~e~~~La~~l~~v~~~l~~~~~~ 272 (348)
T 1gup_A 193 QKSPMLVDYVQRELADGSRTVVETEHWLAVVPYWAAWPFETLLLPKAHVLRITDLTDAQRSDLALALKKLTSRYDNLFQC 272 (348)
T ss_dssp HSSCHHHHHHHHHHHHCTTEEEECSSEEEECCTTCCSTTCEEEEESSCCSSGGGCCHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCchhHHHhhccccCceEEEeCCcEEEEEccCCCCceEEEEEeCcccCChHHCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4789999999998765 99999999999999999999999999999999999999999877777765 55555555664
Q ss_pred CCCeEEEEecCcCC--CCccceeEEEEec---CCC--CCCCCC
Q psy3327 90 DNGYRLVVNNGRHG--AQSVYHLHIHVMG---GRQ--LRWPPG 125 (125)
Q Consensus 90 ~~~~~~~~~~g~~~--~~~v~HlH~HviP---r~~--~~w~~~ 125 (125)
..+||+++|.++.. +|+++|+|+|||| |.. ++|.+|
T Consensus 273 ~~~Yn~g~~~~p~~g~~q~v~HlHiHiiPpl~R~~~~~~~~~g 315 (348)
T 1gup_A 273 SFPYSMGWHGAPFNGEENQHWQLHAHFYPPLLRSATVRKFMVG 315 (348)
T ss_dssp CCCEEEEEECCCSSSSCCTTCCCEEEEECCBCSSSSCBCCCCT
T ss_pred CCCeEEEEEeCCCCCCCCcccEEEEEEecchhccCCcccceee
Confidence 34999999999864 4899999999999 754 355544
No 20
>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc, AMP, structural genomics, protein structure initiative, CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP: d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A*
Probab=99.94 E-value=1e-26 Score=175.71 Aligned_cols=103 Identities=17% Similarity=0.252 Sum_probs=91.9
Q ss_pred CCCCccccccccccCccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHH-HHHHHHHHcCCCC
Q psy3327 13 GGDTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMV-TASKLAKKQGLDN 91 (125)
Q Consensus 13 ~~~C~fC~i~~~e~~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~-~~~~~~~~~~~~~ 91 (125)
+++|+||+++++|. +||||++|+||.|.+|.+|||+||+||+|+.++.+|++++...|++++. +++++.+.++. +
T Consensus 213 ~~~ciFc~ii~~E~---iV~E~e~~~af~~~~p~~P~h~lViPk~Hv~~l~dl~~~e~~~La~~l~~v~~~l~~~~~~-~ 288 (351)
T 1z84_A 213 TGKCCLCEAKSKHF---VIDESSHFVSVAPFAATYPFEIWIIPKDHSSHFHHLDDVKAVDLGGLLKLMLQKIAKQLND-P 288 (351)
T ss_dssp HSSCTTTTHHHHSE---EEEECSSEEEEECTTCSSTTCEEEEESSCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHTTS-C
T ss_pred cCCCHHHHHHhcCe---EEecCCcEEEEeccCCCCCeEEEEEeccccCChHHCCHHHHHHHHHHHHHHHHHHHHhcCC-C
Confidence 47899999999887 9999999999999999999999999999999999999999888888877 55566666665 5
Q ss_pred CeEEEEecCcCCC----CccceeEEEEecCCC
Q psy3327 92 GYRLVVNNGRHGA----QSVYHLHIHVMGGRQ 119 (125)
Q Consensus 92 ~~~~~~~~g~~~~----~~v~HlH~HviPr~~ 119 (125)
+||+++|.|+.+| |+++|+|+|||||.+
T Consensus 289 ~yn~~~n~gp~~g~~~~q~v~HlHiHiiPR~~ 320 (351)
T 1z84_A 289 PYNYMIHTSPLKVTESQLPYTHWFLQIVPQLS 320 (351)
T ss_dssp CEEEEEECCCTTCCGGGGGGCCCEEEEEECCC
T ss_pred CEEEEEeCCCccCCCCCCccceEEEEEEccCC
Confidence 9999999999876 799999999999864
No 21
>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.20A {Marinobacter aquaeolei}
Probab=99.88 E-value=1.7e-22 Score=134.48 Aligned_cols=90 Identities=19% Similarity=0.206 Sum_probs=74.7
Q ss_pred ccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHH-HHHHHHHHHHHHHHHcCCCCCeEEEEecCcCCCCc
Q psy3327 28 CNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAE-ILGHLMVTASKLAKKQGLDNGYRLVVNNGRHGAQS 106 (125)
Q Consensus 28 ~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~-~l~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 106 (125)
..+|+|++.++++++.+|.++||+||+||+|+.++.||++++.. ++..+..+++.+.+.++ ++++|++ .+||+
T Consensus 13 ~~~v~~~~~~~v~l~~~p~~pGh~lV~~k~h~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~-~~~~N~~-----~aGq~ 86 (137)
T 3ohe_A 13 THKLGESRLCDVLLMNDNTWPWVILVPRVSGIREIYELPNEQQQRLLFESSALSEGMMELFG-GDKMNVA-----ALGNM 86 (137)
T ss_dssp EEEEEECSSEEEEEESCTTSCEEEEEESCTTCCSGGGSCHHHHHHHHHHHHHHHHHHHHHTT-CSEEEEE-----ECCSS
T ss_pred cEEEEECCcEEEEEcCCCCCCEEEEEecccccCChHHCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEe-----eccCc
Confidence 47999999999999999999999999999999999999999875 33344446666666666 4788776 47999
Q ss_pred cceeEEEEecCCC--CCCC
Q psy3327 107 VYHLHIHVMGGRQ--LRWP 123 (125)
Q Consensus 107 v~HlH~HviPr~~--~~w~ 123 (125)
|+|+|+|||||+. ..||
T Consensus 87 V~HlH~HviPR~~~D~~~p 105 (137)
T 3ohe_A 87 VPQLHLHHIVRYQGDPAWP 105 (137)
T ss_dssp CCSCCEEEEEECTTSTTTT
T ss_pred CCEEEEEEeCCCCCCCCCC
Confidence 9999999999975 3664
No 22
>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.50A {Vibrio fischeri ES114}
Probab=99.87 E-value=3.3e-22 Score=134.80 Aligned_cols=90 Identities=18% Similarity=0.211 Sum_probs=74.7
Q ss_pred ccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHH-HHHHHHHHHHHHHcCCCCCeEEEEecCcCCCCc
Q psy3327 28 CNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEIL-GHLMVTASKLAKKQGLDNGYRLVVNNGRHGAQS 106 (125)
Q Consensus 28 ~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l-~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 106 (125)
..+|+|++.++++++.+|.+|||+||+||+|+.++.||++++...+ ..+..+++.+.+.++ ++++|++ .+||+
T Consensus 13 ~~~v~~~~~~~v~L~~~p~~pGh~LV~pk~Hv~~l~dL~~e~~~~l~~~~~~va~al~~~~~-~~~~Ni~-----~aGq~ 86 (149)
T 3i24_A 13 CIVLGNLPLCKVLLIKEDIGPWLILVPRIEELKEIHHMTDEQQIQFIKESSAVAQLLEDNFS-PDKINIG-----ALGNL 86 (149)
T ss_dssp EEEEEECSSEEEEEECBSSTTEEEEEESCTTCSSGGGSCHHHHHHHHHHHHHHHHHHHHHHC-CSEEEEE-----ECCSS
T ss_pred CEEEEECCCEEEEEcCCCCCCEEEEEeCccccCChhHCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEh-----hhhCC
Confidence 4799999999999999999999999999999999999999987533 444446666666666 4788776 37999
Q ss_pred cceeEEEEecCCC--CCCC
Q psy3327 107 VYHLHIHVMGGRQ--LRWP 123 (125)
Q Consensus 107 v~HlH~HviPr~~--~~w~ 123 (125)
|+|+|+|||||+. .+||
T Consensus 87 V~HlH~HvIPR~~~D~~~~ 105 (149)
T 3i24_A 87 VPQLHIHHIARFTTDVAWP 105 (149)
T ss_dssp CCSCCEEEEEECTTSTTTT
T ss_pred CCEEEEEEeCCccCCCCCC
Confidence 9999999999976 3665
No 23
>3nrd_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.06A {Sinorhizobium meliloti}
Probab=99.83 E-value=3.6e-20 Score=122.96 Aligned_cols=89 Identities=21% Similarity=0.258 Sum_probs=70.4
Q ss_pred ccEEEEcCeEEEEecCCCCCCceEEEEec-CCcCCCCCCChhhHH-HHHHHHHHHHHHHHHcCCCCCeEEEEecCcCCCC
Q psy3327 28 CNFIHEDDKCVAFNDINPEAPIHFLVIPR-KPIPSLSEAGDEDAE-ILGHLMVTASKLAKKQGLDNGYRLVVNNGRHGAQ 105 (125)
Q Consensus 28 ~~ii~e~~~~~~~~~~~p~~~gh~lIiPk-~H~~~~~~L~~~e~~-~l~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 105 (125)
..+|++++.+.++++.+|.+|| +||||| +|+.++.||++++.. ++..+..+++.+.+.++ ++++|++ .+||
T Consensus 15 ~~~v~~~~~~~v~l~~~~~~p~-~lvVpkr~h~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~-~~~~N~~-----~aGq 87 (135)
T 3nrd_A 15 GIPIGTLGLCQMRLMNDRRWPW-LILVPQRADIKEVFELTPLDQAMLTFETNLVAAGLKKATG-AEKINIG-----ALGN 87 (135)
T ss_dssp EEEEEECSSEEEEEESCTTSCE-EEEEECCTTCCSGGGSCHHHHHHHHHHHHHHHHHHHHHHT-CSEEEEE-----ECCS
T ss_pred CEEEEECCcEEEEEcCCCCCCE-EEEEcCccccCChHHCCHHHHHHHHHHHHHHHHHHHHhcC-CCeEEEe-----eccC
Confidence 4799999999999999999996 577777 799999999999865 33334445555555556 4788775 4799
Q ss_pred ccceeEEEEecCCC--CCCC
Q psy3327 106 SVYHLHIHVMGGRQ--LRWP 123 (125)
Q Consensus 106 ~v~HlH~HviPr~~--~~w~ 123 (125)
+|+|+|+|||||+. ..||
T Consensus 88 ~V~HlH~HviPR~~~D~~~~ 107 (135)
T 3nrd_A 88 IVRQLHVHVIARREGDPNWP 107 (135)
T ss_dssp SCCSCCEEEEEECTTSTTTT
T ss_pred CCCEEEEEEecCCCCCCCCC
Confidence 99999999999975 3565
No 24
>3i4s_A Histidine triad protein; hydrolase, phosphatase, HIT superfamily, PSI-2, NYSGXRC, STR genomics, protein structure initiative; 1.75A {Bradyrhizobium japonicum}
Probab=99.79 E-value=6.5e-19 Score=118.62 Aligned_cols=89 Identities=15% Similarity=0.190 Sum_probs=67.0
Q ss_pred ccEEEEcCeEEEEecCCCCCCceEEEEecC-CcCCCCCCChhhHHHHHHHHH-HHHHHHHHcCCCCCeEEEEecCcCCCC
Q psy3327 28 CNFIHEDDKCVAFNDINPEAPIHFLVIPRK-PIPSLSEAGDEDAEILGHLMV-TASKLAKKQGLDNGYRLVVNNGRHGAQ 105 (125)
Q Consensus 28 ~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~-H~~~~~~L~~~e~~~l~~l~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~ 105 (125)
..++.|.+.++++....| +.+|+|||||+ |+.++.||++++...+..++. +++.+.+.++ ++++|++ .+||
T Consensus 18 ~~~~~e~p~~~v~l~~~~-~~~H~LVIPk~~H~~~l~dL~~e~~~~l~~~~~~va~~l~~~~~-~~g~N~~-----~aGq 90 (149)
T 3i4s_A 18 TIDIGDLPLSKVLVIKDA-NYPWLLLVPRRPDAVEIIDLDEVQQAQLMTEISRVSRALKEITK-CDKLNIA-----ALGN 90 (149)
T ss_dssp EEEEEECSSEEEEEESCT-TSCEEEEEECCTTCCSGGGSCHHHHHHHHHHHHHHHHHHHHHHT-CSEEEEE-----ECCS
T ss_pred CEEEEEcCceEEEECCCC-CCCEEEEEecccccCChhHCCHHHHHHHHHHHHHHHHHHHHhcC-CCeEEEe-----ecCC
Confidence 468999999999998555 56699999999 899999999987544433333 3333333344 4788775 4799
Q ss_pred ccceeEEEEecCCC--CCCC
Q psy3327 106 SVYHLHIHVMGGRQ--LRWP 123 (125)
Q Consensus 106 ~v~HlH~HviPr~~--~~w~ 123 (125)
+|+|+|+|||||++ ..||
T Consensus 91 ~V~HlH~HvIPR~~~D~~~p 110 (149)
T 3i4s_A 91 LVPQLHVHIIARRTGDAAWP 110 (149)
T ss_dssp SCCSCCEEEEEECTTSTTTT
T ss_pred cCCEEEEEEECCcCCCCCCC
Confidence 99999999999975 3564
No 25
>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*
Probab=99.75 E-value=6e-19 Score=123.68 Aligned_cols=89 Identities=21% Similarity=0.311 Sum_probs=68.1
Q ss_pred EEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCCh---hhHHHHHHHHHHHH-HHHHH-c--------CCC--CCeE
Q psy3327 30 FIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGD---EDAEILGHLMVTAS-KLAKK-Q--------GLD--NGYR 94 (125)
Q Consensus 30 ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~---~e~~~l~~l~~~~~-~~~~~-~--------~~~--~~~~ 94 (125)
+|||||.++||.|.+|.++||+|||||+|+.++.++.+ ++..++..|..++. ++++. . +.+ .+|.
T Consensus 23 ~v~edd~~~af~D~~P~a~~H~LVIPk~h~~~~~~p~~al~d~~~Ll~~m~~la~~~~l~~~~~~~~~~~~~~~~~~~~~ 102 (204)
T 3sp4_A 23 VIYYDDDVVLVRDMFPKSKMHLLLMTRDPHLTHVHPLEIMMKHRSLVEKLVSYVQGDLSGLIFDEARNCLSQQLTNEALC 102 (204)
T ss_dssp EEEECSSEEEEECSSCSSSSEEEEEECCTTTTTSCHHHHHHHCHHHHHHHHHHHHTTTHHHHHHHHHHHSCTTCCHHHHH
T ss_pred EEEEcCCEEEEeCCCCCCCccEEEEeccccCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCcCCee
Confidence 99999999999999999999999999999999876543 23556777777766 53222 2 221 2343
Q ss_pred EEEecCcCCCCccceeEEEEecCC
Q psy3327 95 LVVNNGRHGAQSVYHLHIHVMGGR 118 (125)
Q Consensus 95 ~~~~~g~~~~~~v~HlH~HviPr~ 118 (125)
..++.|.++++|+.|||+|||.++
T Consensus 103 ~~i~~GfHa~PSm~HLHLHVIS~D 126 (204)
T 3sp4_A 103 NYIKVGFHAGPSMNNLHLHIMTLD 126 (204)
T ss_dssp TTEEEEEESSCSSSSCCEEEEESC
T ss_pred eeEeccCCCCCcccceeEEEeccC
Confidence 345667778899999999999875
No 26
>3bl9_A Scavenger mRNA-decapping enzyme DCPS; ligand complex, cytoplasm, hydrolase, nonsense-mediated mRNA decay, nucleus, polymorphism, structural genomics; HET: DD2; 1.80A {Homo sapiens} SCOP: d.13.1.3 d.246.1.1 PDB: 3bl7_A* 3bla_A*
Probab=99.40 E-value=3.8e-12 Score=93.61 Aligned_cols=99 Identities=19% Similarity=0.266 Sum_probs=82.4
Q ss_pred ccccccccc-cCccEEEEcCe----EEEEecCC----CCCCceEEEEecCC-cCCCCCCChhhHHHHHHHHHHHHHHHHH
Q psy3327 17 IFGRILRKE-IPCNFIHEDDK----CVAFNDIN----PEAPIHFLVIPRKP-IPSLSEAGDEDAEILGHLMVTASKLAKK 86 (125)
Q Consensus 17 ~fC~i~~~e-~~~~ii~e~~~----~~~~~~~~----p~~~gh~lIiPk~H-~~~~~~L~~~e~~~l~~l~~~~~~~~~~ 86 (125)
+.-.|+.+. .+.+++|||+. |+++.|.. |...-|+|+||++| +.++.+|+.++.++|..|...++++++.
T Consensus 139 Wv~nIl~~~~E~e~ilyeD~d~~~gFvllpDlkWd~~~~~~lhlLaI~~~~~I~SlrdL~~~HlpLL~~M~~~~~~~i~~ 218 (301)
T 3bl9_A 139 WVYNILDKKAEADRIVFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPEHLPLLRNILHQGQEAILQ 218 (301)
T ss_dssp HHHHHHTTSSSGGGCCEEECCTTTCEEEEECTTCCSSCSTTCEEEEEESSSCCCSGGGCCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhCCCccccEEEecCCCCcCEEEeccCccCCCcccccEEEEEecccCCCChHHCCHhHHHHHHHHHHHHHHHHHH
Confidence 334466663 44689999988 99999976 77999999999998 9999999999999999999999999887
Q ss_pred c-CC-CCCeEEEEecCcCCCCccceeEEEEecCCC
Q psy3327 87 Q-GL-DNGYRLVVNNGRHGAQSVYHLHIHVMGGRQ 119 (125)
Q Consensus 87 ~-~~-~~~~~~~~~~g~~~~~~v~HlH~HviPr~~ 119 (125)
. +. .+.++++++..| +..|+|+|||....
T Consensus 219 ~y~~~~~~~rlgfHy~P----S~yHLHlHvis~~~ 249 (301)
T 3bl9_A 219 RYRMKGDHLRVYLHYLP----SYYHLHVHFTALGF 249 (301)
T ss_dssp HHCCCGGGEEEEEESSC----SSSSCEEEEEETTS
T ss_pred hcCCChHHeEEEecCCC----CcceEEEEEEecCC
Confidence 5 54 367888888654 78999999997653
No 27
>1vlr_A MRNA decapping enzyme; 16740816, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 1.83A {Mus musculus} SCOP: d.13.1.3 d.246.1.1 PDB: 1xmm_B* 1xml_B 1st0_B* 1st4_B*
Probab=99.37 E-value=6.5e-12 Score=93.68 Aligned_cols=99 Identities=20% Similarity=0.269 Sum_probs=81.0
Q ss_pred ccccccccc-cCccEEEEcCe----EEEEecCC----CCCCceEEEEecCC-cCCCCCCChhhHHHHHHHHHHHHHHHHH
Q psy3327 17 IFGRILRKE-IPCNFIHEDDK----CVAFNDIN----PEAPIHFLVIPRKP-IPSLSEAGDEDAEILGHLMVTASKLAKK 86 (125)
Q Consensus 17 ~fC~i~~~e-~~~~ii~e~~~----~~~~~~~~----p~~~gh~lIiPk~H-~~~~~~L~~~e~~~l~~l~~~~~~~~~~ 86 (125)
+.-.|+.+. .+.+++|||+. |+++.|.. |...-|+|+||++| +.|+.+|+.++.++|..|...++++++.
T Consensus 186 Wv~nIl~~~~E~e~vlyeD~d~~~gFvllpDlKWd~~~~~~lhlLaI~~~~dI~SlRdL~~~HlpLL~~M~~~~~~ii~~ 265 (350)
T 1vlr_A 186 WVYNILDKKAEADRIVFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPEHLPLLRNILREGQEAILK 265 (350)
T ss_dssp HHHHHHTC----CCCSEEECCTTTCEEEEECTTCCSSCSTTCEEEEEESSSCCCSGGGCCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhCCCccccEEEecCCCCCCeEEeccCccCCCccccceEEEEecccCCCChHHCCHhHHHHHHHHHHHHHHHHHH
Confidence 344466663 45689999988 99999976 77999999999998 9999999999999999999999999887
Q ss_pred c-CC-CCCeEEEEecCcCCCCccceeEEEEecCCC
Q psy3327 87 Q-GL-DNGYRLVVNNGRHGAQSVYHLHIHVMGGRQ 119 (125)
Q Consensus 87 ~-~~-~~~~~~~~~~g~~~~~~v~HlH~HviPr~~ 119 (125)
. +. .+.++++++..| ++.|||+|||....
T Consensus 266 ~yg~~~~~lRlgfHy~P----S~yHLHlHvis~~~ 296 (350)
T 1vlr_A 266 RYQVTGDRLRVYLHYLP----SYYHLHVHFTALGF 296 (350)
T ss_dssp HHCCCGGGEEEEEESSC----SSSSCEEEEEETTS
T ss_pred hcCCChHHeEEEecCCC----CcceEEEEEEeccC
Confidence 5 54 367888888654 78999999997653
No 28
>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc, AMP, structural genomics, protein structure initiative, CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP: d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A*
Probab=99.01 E-value=2.8e-09 Score=80.36 Aligned_cols=101 Identities=14% Similarity=0.116 Sum_probs=73.4
Q ss_pred CCCCccccccccccCccEEE-----EcCeEEEEecCCCCCC------------c-----------eEEEEecCCcCCCCC
Q psy3327 13 GGDTIFGRILRKEIPCNFIH-----EDDKCVAFNDINPEAP------------I-----------HFLVIPRKPIPSLSE 64 (125)
Q Consensus 13 ~~~C~fC~i~~~e~~~~ii~-----e~~~~~~~~~~~p~~~------------g-----------h~lIiPk~H~~~~~~ 64 (125)
+..|+||.-.....+..+.. .+-.+++|.+.+|... | +++|.+.+|..++.+
T Consensus 60 ~~~CpfCpg~~~~t~~e~~~~~~~~~~~~~~v~~N~fP~l~~~~~~~~~~~~~~l~~~~~~~G~~~Vii~sp~H~~~l~~ 139 (351)
T 1z84_A 60 PSSCPFCIGREQECAPELFRVPDHDPNWKLRVIENLYPALSRNLETQSTQPETGTSRTIVGFGFHDVVIESPVHSIQLSD 139 (351)
T ss_dssp -CCCTTSTTCGGGSSCEEEEESTTCSSCSEEEEECSSCSSBGGGTTTC--------CEEECBCEEEEEECCSSSSCCGGG
T ss_pred CCCCcCCCCCcccCCcccccccccCCCceEEEEcCCCccccCCCCCcccccccchhhccccCcceEEEEeCCCCCCCcHH
Confidence 44799999433333322222 3457899999999983 4 889999999999999
Q ss_pred CChhhHHHHHHHHHHHHHHHHHcCC---CCCeEEEEecCcCCCCccceeEEEEec
Q psy3327 65 AGDEDAEILGHLMVTASKLAKKQGL---DNGYRLVVNNGRHGAQSVYHLHIHVMG 116 (125)
Q Consensus 65 L~~~e~~~l~~l~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~v~HlH~HviP 116 (125)
|+.++.. +++.+.++-.+.++. ...++++.|.|..+|.|..|.|.||+.
T Consensus 140 ls~~e~~---~vi~~~~~~~~~L~~~~~~~yv~iF~N~G~~aGaSl~HpH~QI~a 191 (351)
T 1z84_A 140 IDPVGIG---DILIAYKKRINQIAQHDSINYIQVFKNQGASAGASMSHSHSQMMA 191 (351)
T ss_dssp SCHHHHH---HHHHHHHHHHHHHTTCTTCCEEEEEEEESGGGTCCCSSCEEEEEE
T ss_pred CCHHHHH---HHHHHHHHHHHHHhcccCCCEEEEEEEcCcccCCCCcCccceeEe
Confidence 9998744 455544455555542 246788999999999999999999985
No 29
>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase, galactose metabolism; HET: GDU; 1.80A {Escherichia coli} SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A*
Probab=97.69 E-value=0.00029 Score=52.85 Aligned_cols=64 Identities=13% Similarity=0.047 Sum_probs=43.2
Q ss_pred eEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHcCCCCC-eEEEEecCcCCCCccceeEEEEec
Q psy3327 50 HFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQGLDNG-YRLVVNNGRHGAQSVYHLHIHVMG 116 (125)
Q Consensus 50 h~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~v~HlH~HviP 116 (125)
.++|...+|-.++.+|+.++...+ +.....-.+.++..-. +.+.-|.|+.+|.|..|-|..|+.
T Consensus 107 ~VIi~sp~H~~~l~~l~~~~~~~v---i~~~~~r~~~l~~~~~yV~iF~N~G~~~G~Sl~HpH~Qi~a 171 (348)
T 1gup_A 107 RVICFSPDHSKTLPELSVAALTEI---VKTWQEQTAELGKTYPWVQVFENKGAAMGCSNPHPGGQIWA 171 (348)
T ss_dssp EEEESCSCTTCCGGGSCHHHHHHH---HHHHHHHHHHHHHHCSEEEEEEEESGGGTCSCCSSEEEEEE
T ss_pred EEEEcCCcccCChhhCCHHHHHHH---HHHHHHHHHHHhhcCCEEEEecccCCcCCcCCCCCceeEEe
Confidence 556667799999999998875433 3322222233321122 345678899999999999999974
No 30
>2pof_A CDP-diacylglycerol pyrophosphatase; NYSGXRC, PFAM02611, PSI-2, phospholipid biosynthesis structural genomics, protein structure initiative; 1.40A {Escherichia coli} SCOP: d.13.1.4
Probab=96.96 E-value=0.0025 Score=45.02 Aligned_cols=85 Identities=20% Similarity=0.397 Sum_probs=58.8
Q ss_pred CccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCC---CChhhHHHHHHHHHHHHHHHHHcCC--C-CCeEEEEecC
Q psy3327 27 PCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSE---AGDEDAEILGHLMVTASKLAKKQGL--D-NGYRLVVNNG 100 (125)
Q Consensus 27 ~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~---L~~~e~~~l~~l~~~~~~~~~~~~~--~-~~~~~~~~~g 100 (125)
|..-|.....++++.| +..+.|.|+||.+.++-+.+ +++.....+..-...-..+.++++. + +.+.+.+|.-
T Consensus 30 PC~~Vd~~~gyvvlKD--~~Gp~qyLLmPt~rItGIEsP~Ll~~~~pnYf~~AW~aR~~v~~~~g~pipd~~lsLaINS~ 107 (227)
T 2pof_A 30 PCAEVKPNAGYVVLKD--LNGPLQYLLMPTYRINGTESPLLTDPSTPNFFWLAWQARDFMSKKYGQPVPDRAVSLAINSR 107 (227)
T ss_dssp TSSEEETTTTEEEEEC--SSSSSCEEEEESSCCCSTTCGGGGSTTSCCHHHHHHHTTHHHHHHHTSCCCGGGEEEEEBCG
T ss_pred CCceEccCCCEEEEeC--CCCCceEEEeccccccCccChhhcCCCCCcHHHHHHHHhHHHHHhhCCCCCccceEEEecCC
Confidence 3456677788888888 56888999999999876653 4443344566666544456666664 3 3566677753
Q ss_pred cCCCCccceeEEEEe
Q psy3327 101 RHGAQSVYHLHIHVM 115 (125)
Q Consensus 101 ~~~~~~v~HlH~Hvi 115 (125)
.|-|-.|||+||=
T Consensus 108 --~gRSQnQLHIHIs 120 (227)
T 2pof_A 108 --TGRTQNHFHIHIS 120 (227)
T ss_dssp --GGCSCCSCCEEEE
T ss_pred --CCccccceeeehh
Confidence 4788899999985
No 31
>3vg8_G Hypothetical protein TTHB210; alpha and beta proteins (A+B), unknown function; 2.20A {Thermus thermophilus}
Probab=83.19 E-value=2.7 Score=26.12 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=20.2
Q ss_pred CCCeEEEEecCcCCCCccceeEEEEe
Q psy3327 90 DNGYRLVVNNGRHGAQSVYHLHIHVM 115 (125)
Q Consensus 90 ~~~~~~~~~~g~~~~~~v~HlH~Hvi 115 (125)
-+..++.+| +.+.|-+++|.|+|+.
T Consensus 76 vDHVdi~~~-~gHpGve~PHyhI~l~ 100 (116)
T 3vg8_G 76 IDHVNMIPS-GPHPGVSEPHYHIELV 100 (116)
T ss_dssp CCEEEEEEC-CCCTTCCSCEEEEEEE
T ss_pred cceEEEecC-CCCCCcccCceEEEEE
Confidence 367888886 4468999999999985
No 32
>2cs7_A Pneumococcal histidine triad A protein; PHTA, pneumococcal histidine triad protein, structural genomics, unknown function; 1.20A {Streptococcus pneumoniae} SCOP: d.9.2.1
Probab=48.20 E-value=5.4 Score=21.68 Aligned_cols=16 Identities=31% Similarity=0.301 Sum_probs=11.6
Q ss_pred Ccccee-EEEEecCCCC
Q psy3327 105 QSVYHL-HIHVMGGRQL 120 (125)
Q Consensus 105 ~~v~Hl-H~HviPr~~~ 120 (125)
-.++|- |+|.||+.+|
T Consensus 25 yvv~HGdH~HyIpk~~L 41 (55)
T 2cs7_A 25 YIVPHGDHYHYIPKNEL 41 (55)
T ss_dssp EEEEETTEEEEEEGGGS
T ss_pred EEEecCCeEEEeEhHHC
Confidence 345565 9999998765
No 33
>1ts9_A Ribonuclease P protein component 1; anti-parallel, beta-sheet, alpha helix, internal salt bridge, selenomethionine, SM-fold, hydrolase; 1.70A {Archaeoglobus fulgidus} SCOP: b.137.1.1 PDB: 1tsf_A 1pc0_A
Probab=42.21 E-value=31 Score=20.98 Aligned_cols=28 Identities=7% Similarity=0.141 Sum_probs=24.0
Q ss_pred ccEEEEcCeEEEEecCCCCCCceEEEEecCCcC
Q psy3327 28 CNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIP 60 (125)
Q Consensus 28 ~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~ 60 (125)
+.+|.|+.+.+.+.. .+.+.+|||++..
T Consensus 35 GiVV~ETkntf~I~t-----~~~~k~VPK~~~v 62 (102)
T 1ts9_A 35 GEVVDETQNTLKIMT-----EKGLKVVAKRGRT 62 (102)
T ss_dssp EEEEEECSSEEEEEE-----SSSEEEEECTTCE
T ss_pred EEEEEeccceEEEEe-----CCcEEEEECCCEE
Confidence 479999999998886 4688999999964
No 34
>1mg4_A Doublecortin, doublecortin-like kinase (N-terminal domain); DCX domain, microtubule bundling, cortex development, transferase; 1.50A {Homo sapiens} SCOP: d.15.11.1 PDB: 1mfw_A 1mjd_A 2bqq_A 2xrp_I*
Probab=41.16 E-value=26 Score=21.70 Aligned_cols=28 Identities=11% Similarity=-0.012 Sum_probs=23.2
Q ss_pred eEEEEecCCCCCCceEEEEecCCcCCCC
Q psy3327 36 KCVAFNDINPEAPIHFLVIPRKPIPSLS 63 (125)
Q Consensus 36 ~~~~~~~~~p~~~gh~lIiPk~H~~~~~ 63 (125)
.+.++.+-++..+|-.++|.++.+.++.
T Consensus 17 ~I~~yrNGD~~~~G~~~~v~~~~~~tfd 44 (113)
T 1mg4_A 17 KVRFYRNGDRYFKGIVYAISPDRFRSFE 44 (113)
T ss_dssp EEEEEETTCSSCCCEEEEECTTTCSSHH
T ss_pred EEEEEECCCCCCCCEEEEECccccCCHH
Confidence 4567777789999999999999988763
No 35
>2f5g_A Transposase, putative; dimer, stem-loop binding, gene regulation; 1.70A {Sulfolobus solfataricus} SCOP: d.58.57.1 PDB: 2f4f_A 2ec2_A
Probab=37.61 E-value=48 Score=20.28 Aligned_cols=37 Identities=22% Similarity=0.245 Sum_probs=21.7
Q ss_pred CCCceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHcC
Q psy3327 46 EAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQG 88 (125)
Q Consensus 46 ~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~ 88 (125)
...+|+.++++....-|.+ +. ...+.+..+.+.+..+
T Consensus 12 ~~~yhi~~~~~~R~~v~~~---~~---~~~l~~~l~~~~~~~~ 48 (133)
T 2f5g_A 12 LCNYHFVWIPKHRRNTLVN---EI---AEYTKEVLKSIAEELG 48 (133)
T ss_dssp ECEEEEEECBSSCTTCSCH---HH---HHHHHHHHHHHHHHHT
T ss_pred ceEEEEEEecCcchhhhch---hH---HHHHHHHHHHHHHhCC
Confidence 3578888888888764543 22 2234444556655554
No 36
>1v76_A RNAse P protein PH1771P; RNA binding protein, archaeal RNAse P protein; 2.00A {Pyrococcus horikoshii} SCOP: b.137.1.1
Probab=37.60 E-value=42 Score=20.06 Aligned_cols=33 Identities=15% Similarity=0.081 Sum_probs=26.3
Q ss_pred ccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCC
Q psy3327 28 CNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAG 66 (125)
Q Consensus 28 ~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~ 66 (125)
+.+|.|+.+.+.+.. ..+.+|||.+..-..+++
T Consensus 37 GiVV~ET~ntf~I~t------~~~~~VPK~~~vF~f~~~ 69 (96)
T 1v76_A 37 GYVIDETRNMLVIAG------DRIWKVPKDVSIFEFEAD 69 (96)
T ss_dssp EEEEEECSSEEEEES------SSEEEEESTTEEEEEECT
T ss_pred EEEEEeccceEEEEc------CCEEEEECCCEEEEEEEC
Confidence 479999999999987 388999999975434454
No 37
>3hfn_A ASL2047 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 2.31A {Nostoc SP}
Probab=37.42 E-value=22 Score=20.32 Aligned_cols=32 Identities=25% Similarity=0.345 Sum_probs=23.1
Q ss_pred CccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCC
Q psy3327 27 PCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSL 62 (125)
Q Consensus 27 ~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~ 62 (125)
.+++.+.|.+|+++.+.+ ++-.+|.|+.+..+
T Consensus 37 ~G~i~WQD~~cl~L~~~~----~~~~LI~R~AI~~I 68 (72)
T 3hfn_A 37 TGRVLWQDPTCVCIADEN----SRQTTIWKQAIAYL 68 (72)
T ss_dssp EEEEEEECSSEEEEEC-------CEEEEEGGGEEEE
T ss_pred EEEEEEECCCEEEEEcCC----CCeEEEEeeeeEEE
Confidence 358999999999999854 56677788776543
No 38
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=35.73 E-value=14 Score=21.14 Aligned_cols=18 Identities=17% Similarity=0.073 Sum_probs=12.9
Q ss_pred chHhhhhccCCCCCCccccc
Q psy3327 2 SEVEKAAQAAPGGDTIFGRI 21 (125)
Q Consensus 2 ~~~~~~~~~~~~~~C~fC~i 21 (125)
.+|+.++.+... |+||.-
T Consensus 17 kkie~~q~~ky~--C~fCgk 34 (72)
T 3jyw_9 17 KKLEIQQHARYD--CSFCGK 34 (72)
T ss_dssp HHHHHHHHSCBC--CSSCCS
T ss_pred HHHHHHhccCcc--CCCCCC
Confidence 467777776655 999983
No 39
>2zae_A Ribonuclease P protein component 1; ribonuclease P protein subunits, hetero dimer, hydrolase, TR processing; 2.21A {Pyrococcus horikoshii} PDB: 2ki7_A
Probab=33.22 E-value=45 Score=21.14 Aligned_cols=33 Identities=15% Similarity=0.081 Sum_probs=26.4
Q ss_pred ccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCC
Q psy3327 28 CNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAG 66 (125)
Q Consensus 28 ~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~ 66 (125)
+.+|.|+.+.+.+.. ..+.+|||.+..-..+++
T Consensus 68 GiVV~ETknTf~I~t------~~~k~VPK~~~vF~f~l~ 100 (127)
T 2zae_A 68 GYVIDETRNMLVIAG------DRIWKVPKDVSIFEFEAD 100 (127)
T ss_dssp EEEEEEETTEEEEES------SSEEEEESTTEEEEEECT
T ss_pred EEEEEcccceEEEEc------CCEEEEECCCeEEEEEeC
Confidence 469999999999987 489999999976444454
No 40
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=30.25 E-value=41 Score=20.54 Aligned_cols=23 Identities=13% Similarity=0.137 Sum_probs=19.7
Q ss_pred CCceEEEEecCCcCCCCCCChhh
Q psy3327 47 APIHFLVIPRKPIPSLSEAGDED 69 (125)
Q Consensus 47 ~~gh~lIiPk~H~~~~~~L~~~e 69 (125)
..|++.|.+|.|+..+.-|++.+
T Consensus 77 ~NgRLfvc~kd~~d~LtPlpeq~ 99 (104)
T 1wgy_A 77 ASGRIYVYRKDLADTLNPFAENS 99 (104)
T ss_dssp SSCEEEEEECCSSSCCCCCCCCC
T ss_pred ccceEEEeehHhcccccCCcccc
Confidence 48999999999999998877653
No 41
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=29.78 E-value=19 Score=21.22 Aligned_cols=18 Identities=11% Similarity=-0.055 Sum_probs=12.7
Q ss_pred chHhhhhccCCCCCCccccc
Q psy3327 2 SEVEKAAQAAPGGDTIFGRI 21 (125)
Q Consensus 2 ~~~~~~~~~~~~~~C~fC~i 21 (125)
.+|+.++.+... |+||.-
T Consensus 26 kkie~~q~~ky~--CpfCGk 43 (83)
T 3j21_i 26 AAVEAKMRQKHT--CPVCGR 43 (83)
T ss_dssp HHHHHHHHSCBC--CSSSCS
T ss_pred HHHHHHhhcccC--CCCCCC
Confidence 356777766655 999983
No 42
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=28.88 E-value=22 Score=21.29 Aligned_cols=18 Identities=17% Similarity=0.073 Sum_probs=12.9
Q ss_pred chHhhhhccCCCCCCccccc
Q psy3327 2 SEVEKAAQAAPGGDTIFGRI 21 (125)
Q Consensus 2 ~~~~~~~~~~~~~~C~fC~i 21 (125)
.+|+.++.+... |+||.-
T Consensus 27 kkie~~q~~ky~--CpfCgk 44 (92)
T 3izc_m 27 KKLEIQQHARYD--CSFCGK 44 (92)
T ss_dssp HHHHHHHHSCCC--CSSSCS
T ss_pred HHHHHHHhcCCc--CCCCCC
Confidence 356777776655 999983
No 43
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Probab=28.82 E-value=43 Score=24.42 Aligned_cols=26 Identities=12% Similarity=0.056 Sum_probs=16.7
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHcCC
Q psy3327 64 EAGDEDAEILGHLMVTASKLAKKQGL 89 (125)
Q Consensus 64 ~L~~~e~~~l~~l~~~~~~~~~~~~~ 89 (125)
+|+++|.+.|..-....++..+.++.
T Consensus 290 ~L~~~E~~~l~~s~~~l~~~~~~~~~ 315 (326)
T 3pqe_A 290 NLNEKEKEQFLHSAGVLKNILKPHFA 315 (326)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 68888877766665555555555443
No 44
>3hfo_A SSR3341 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 1.30A {Synechocystis SP}
Probab=28.80 E-value=44 Score=18.90 Aligned_cols=31 Identities=10% Similarity=0.008 Sum_probs=23.6
Q ss_pred CccEEEEcCeEEEEecCCCCCCceEEEEecCCcCC
Q psy3327 27 PCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPS 61 (125)
Q Consensus 27 ~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~ 61 (125)
.+.+.+.|.+|+++.+.. ++-.+|.|..++.
T Consensus 35 ~G~i~WQD~~cl~L~~~~----~~~~LI~r~AI~~ 65 (70)
T 3hfo_A 35 FGTIRWQDTDGLGLVDDS----ERSTIVRLAAIAY 65 (70)
T ss_dssp EEEEEEECSSEEEEECTT----CCEEEEEGGGEEE
T ss_pred EEEEEEeCCCEEEEEcCC----CCeEEEEeeeeEE
Confidence 358999999999998753 5667777776653
No 45
>1oqk_A Conserved protein MTH11; OB fold, archaeal RNAse P protein subunit, hydrolase; NMR {Methanothermobacterthermautotrophicus} SCOP: b.137.1.1
Probab=27.74 E-value=51 Score=19.74 Aligned_cols=35 Identities=6% Similarity=-0.044 Sum_probs=26.4
Q ss_pred ccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCC
Q psy3327 28 CNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAG 66 (125)
Q Consensus 28 ~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~ 66 (125)
+.+|.|+.+.+.+... .+.+.+|||++..--.+++
T Consensus 36 GiVV~ET~ntf~I~t~----~~~~k~VPK~~~vF~f~~~ 70 (97)
T 1oqk_A 36 GRVVDETRNTLRIEMD----DGREITVPKGIAVFHFRTP 70 (97)
T ss_dssp EECCEEETTEEEEEET----TTEEEEEECTTCEEEEEET
T ss_pred EEEEEcccceEEEEcC----CCcEEEEECCCEEEEEEEC
Confidence 4799999999999863 3589999999865333443
No 46
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=25.75 E-value=24 Score=21.16 Aligned_cols=18 Identities=11% Similarity=-0.021 Sum_probs=13.2
Q ss_pred chHhhhhccCCCCCCccccc
Q psy3327 2 SEVEKAAQAAPGGDTIFGRI 21 (125)
Q Consensus 2 ~~~~~~~~~~~~~~C~fC~i 21 (125)
.+|+.++.+.. .|+||.-
T Consensus 27 kkie~~q~~ky--~CpfCgk 44 (92)
T 3iz5_m 27 KKMEVSQHSKY--FCEFCGK 44 (92)
T ss_dssp HHHHHHHHSCB--CCTTTCS
T ss_pred HHHHHHHhccc--cCcccCC
Confidence 36777777766 4999983
No 47
>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}
Probab=24.19 E-value=65 Score=23.95 Aligned_cols=38 Identities=16% Similarity=0.122 Sum_probs=20.0
Q ss_pred CCCCceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHH
Q psy3327 45 PEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAK 85 (125)
Q Consensus 45 p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~ 85 (125)
|...+-.-....+|+-++.||+.+|+. .+++.+..+.+
T Consensus 12 ~~~~~~~~~~~~rhlLsi~dls~~ei~---~ll~~A~~lK~ 49 (353)
T 3sds_A 12 PYTNGSHAPSTPRHLLSIADLTPTEFA---TLVRNASSYKK 49 (353)
T ss_dssp ----------CCCCBSCGGGSCHHHHH---HHHHHHHHHHH
T ss_pred CccCCCcccccCCCcCchhhCCHHHHH---HHHHHHHHHHH
Confidence 333333344457999999999999854 45555555543
No 48
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=23.71 E-value=54 Score=20.56 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=19.8
Q ss_pred CCceEEEEecCCcCCCCCCChhh
Q psy3327 47 APIHFLVIPRKPIPSLSEAGDED 69 (125)
Q Consensus 47 ~~gh~lIiPk~H~~~~~~L~~~e 69 (125)
..|++.+.+|.|+..+.-|++.+
T Consensus 83 ~NgRLfvc~kd~~d~LtPLpEq~ 105 (120)
T 2dhz_A 83 INSHLFACTRDSYEALVPLPEEI 105 (120)
T ss_dssp SSEEEEEECTTTTTTCCCCCCSS
T ss_pred ccceEEEeehHhcccccCCcccc
Confidence 48999999999999998887654
No 49
>2vjv_A Transposase ORFA; DNA-binding protein, protein-DNA complex, HUH motif, DNA stem loop, transposition; 1.90A {Helicobacter pylori} SCOP: d.58.57.1 PDB: 2vhg_A 2vic_A 2vju_A 2vih_A 2a6m_A 2a6o_A
Probab=22.71 E-value=1.5e+02 Score=18.74 Aligned_cols=36 Identities=17% Similarity=0.110 Sum_probs=21.2
Q ss_pred CCceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHcC
Q psy3327 47 APIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQG 88 (125)
Q Consensus 47 ~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~ 88 (125)
..+|+++++|.-..-|. ++.. ..+.+..+.+.+..+
T Consensus 21 ~~YHiv~~~k~R~~vf~---~~~~---~~l~~~l~~~~~~~~ 56 (159)
T 2vjv_A 21 CKYHIVWCPKYRRKVLV---GAVE---MRLKEIIQEVAKELR 56 (159)
T ss_dssp CEEEEEECBGGGCCCCS---HHHH---HHHHHHHHHHHHHTT
T ss_pred eEEEEEEeccCCccccC---ccHH---HHHHHHHHHhhccCC
Confidence 46788899987776443 3332 334444556666544
No 50
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=22.52 E-value=1.1e+02 Score=17.34 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCeEEEEe
Q psy3327 73 LGHLMVTASKLAKKQGLDNGYRLVVN 98 (125)
Q Consensus 73 l~~l~~~~~~~~~~~~~~~~~~~~~~ 98 (125)
..+++.+..++++.++. .+.|+..|
T Consensus 62 akelleliarllqklgy-kdinvrvn 86 (96)
T 2jvf_A 62 AKELLELIARLLQKLGY-KDINVRVN 86 (96)
T ss_dssp HHHHHHHHHHHHHHHTC-SEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCC-CceEEEEc
Confidence 34566667788888886 46676655
No 51
>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=22.45 E-value=94 Score=22.48 Aligned_cols=29 Identities=21% Similarity=0.260 Sum_probs=21.1
Q ss_pred ecCCcCCCCCCChhhHHHHHHHHHHHHHHHHH
Q psy3327 55 PRKPIPSLSEAGDEDAEILGHLMVTASKLAKK 86 (125)
Q Consensus 55 Pk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~ 86 (125)
..||+-++.||+.+|+ ..+++.+..+.+.
T Consensus 8 ~~rhlls~~dls~~ei---~~ll~~A~~lk~~ 36 (301)
T 2ef0_A 8 LPKDLLDFSGYGPKEL---QALLDLAEQLKRE 36 (301)
T ss_dssp CCSCBSSSTTCCHHHH---HHHHHHHHHHHHH
T ss_pred ccCCCcchhhCCHHHH---HHHHHHHHHHHhc
Confidence 3589999999999974 4566666666544
No 52
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1
Probab=21.57 E-value=76 Score=23.04 Aligned_cols=26 Identities=27% Similarity=0.449 Sum_probs=18.5
Q ss_pred cCCcCCCCCCChhhHHHHHHHHHHHHHHH
Q psy3327 56 RKPIPSLSEAGDEDAEILGHLMVTASKLA 84 (125)
Q Consensus 56 k~H~~~~~~L~~~e~~~l~~l~~~~~~~~ 84 (125)
.||+-++.||+.+|+. .+++.+..+.
T Consensus 5 ~rh~l~~~dls~~ei~---~ll~~A~~lk 30 (308)
T 1ml4_A 5 GRDVISIRDFSKEDIE---TVLATAERLE 30 (308)
T ss_dssp TCCBCCGGGCCHHHHH---HHHHHHHHHH
T ss_pred CCcCcchhhCCHHHHH---HHHHHHHHHH
Confidence 5899999999999854 4444454444
No 53
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=20.73 E-value=78 Score=23.19 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=21.0
Q ss_pred ecCCcCCCCCCChhhHHHHHHHHHHHHHHHHH
Q psy3327 55 PRKPIPSLSEAGDEDAEILGHLMVTASKLAKK 86 (125)
Q Consensus 55 Pk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~ 86 (125)
..||+-++.||+.+|+ ..+++.+..+.+.
T Consensus 12 ~~rhllsi~dls~~ei---~~ll~~A~~lk~~ 40 (323)
T 3gd5_A 12 FRPDLLSLDDLDEAQL---HALLTLAHQLKRG 40 (323)
T ss_dssp CCSCBSSGGGSCHHHH---HHHHHHHHHHHHT
T ss_pred cCCCccchHhCCHHHH---HHHHHHHHHHHhc
Confidence 4589999999999874 4566666666543
No 54
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A
Probab=20.57 E-value=1.1e+02 Score=22.60 Aligned_cols=26 Identities=15% Similarity=0.195 Sum_probs=18.7
Q ss_pred cCCcCCCCCCChhhHHHHHHHHHHHHHHH
Q psy3327 56 RKPIPSLSEAGDEDAEILGHLMVTASKLA 84 (125)
Q Consensus 56 k~H~~~~~~L~~~e~~~l~~l~~~~~~~~ 84 (125)
.||+-++.||+.+|+. .+++.+..+.
T Consensus 6 ~rh~Ls~~dls~~ei~---~ll~~A~~lk 31 (335)
T 1dxh_A 6 NRNLLSLMHHSTRELR---YLLDLSRDLK 31 (335)
T ss_dssp TCCBSSSTTCCHHHHH---HHHHHHHHHH
T ss_pred CCCCCchHhCCHHHHH---HHHHHHHHHH
Confidence 5899999999999855 4455455544
Done!