RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3327
(125 letters)
>3o1c_A Histidine triad nucleotide-binding protein 1; hydrolase, HINT
protein, HIT protein, adenosine 5'- monophosphoramidase;
HET: ADN; 1.08A {Oryctolagus cuniculus} PDB: 3llj_A*
1rzy_A* 3qgz_A* 3o1z_A 3o1x_A* 4eqe_A* 4eqg_A* 4eqh_A*
3tw2_A* 1kpb_A 1kpf_A* 1kpa_A 1kpc_A 1av5_A* 1kpe_A*
4rhn_A* 3rhn_A* 5rhn_A* 6rhn_A
Length = 126
Score = 221 bits (566), Expect = 1e-76
Identities = 74/124 (59%), Positives = 91/124 (73%)
Query: 2 SEVEKAAQAAPGGDTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPS 61
E+ KA A PGGDTIFG+I+RKEIP I EDD+ +AF+DI+P+AP HFLVIP+K I
Sbjct: 3 DEIAKAQVARPGGDTIFGKIIRKEIPAKIIFEDDQALAFHDISPQAPTHFLVIPKKHISQ 62
Query: 62 LSEAGDEDAEILGHLMVTASKLAKKQGLDNGYRLVVNNGRHGAQSVYHLHIHVMGGRQLR 121
+S A D D +LGHLM+ K A GL GYR+VVN G G QSVYH+H+HV+GGRQ+
Sbjct: 63 ISAAEDADESLLGHLMIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMN 122
Query: 122 WPPG 125
WPPG
Sbjct: 123 WPPG 126
>4egu_A Histidine triad (HIT) protein; structural genomics, center for
structural genomics of infec diseases, csgid, HIT
domain, unknown function; HET: 5GP; 0.95A {Clostridium
difficile}
Length = 119
Score = 197 bits (504), Expect = 2e-67
Identities = 48/113 (42%), Positives = 74/113 (65%), Gaps = 2/113 (1%)
Query: 15 DTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILG 74
D IF +I EIP ++EDD+ +AFND+NP AP H LV+P+K SL + D++ +I+
Sbjct: 5 DCIFCKIANGEIPSTKVYEDDRVLAFNDLNPVAPYHILVVPKKHYDSLIDIPDKEMDIVS 64
Query: 75 HLMVTASKLAKKQGLD-NGYRLVVNNGRHGAQSVYHLHIHVMGGRQL-RWPPG 125
H+ V +K+AK++G D G+R++ N G G Q V HLH H++ G++L + G
Sbjct: 65 HIHVVINKIAKEKGFDQTGFRVINNCGSDGGQEVKHLHYHILAGKKLPNYEAG 117
>3oj7_A Putative histidine triad family protein; hydrolase, structural
genomics, seattle structural genomics for infectious
disease, ssgcid; 1.40A {Entamoeba histolytica} PDB:
3omf_A* 3oxk_A*
Length = 117
Score = 195 bits (497), Expect = 3e-66
Identities = 47/110 (42%), Positives = 71/110 (64%), Gaps = 1/110 (0%)
Query: 15 DTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILG 74
IF +I +K+IP ++EDD+ AF DINP APIH LVIP++ I SL+E +E+ +G
Sbjct: 8 SCIFCKIAQKQIPSTIVYEDDEIFAFKDINPIAPIHILVIPKQHIASLNEITEENEAFIG 67
Query: 75 HLMVTASKLAKKQGLDNGYRLVVNNGRHGAQSVYHLHIHVMGGRQLRWPP 124
++ S + KK+ + GYR+V N G Q+V H+H H++GG++L W
Sbjct: 68 KVLYKVSLIGKKECPE-GYRVVNNIGEDAGQTVKHIHFHILGGKKLAWDK 116
>1xqu_A HIT family hydrolase; protein STRU initiative, PSI, southeast
collaboratory for structural GEN secsg; 2.30A
{Clostridium thermocellum} SCOP: d.13.1.1
Length = 147
Score = 192 bits (489), Expect = 1e-64
Identities = 43/121 (35%), Positives = 76/121 (62%), Gaps = 1/121 (0%)
Query: 1 MSEVEKAAQAAPGGDTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIP 60
S +KA + +F +I+++E+P +ED++ +A DINP AP+H L+IP++ I
Sbjct: 22 TSLYKKAGLMYTLENCVFCKIIKRELPSTIYYEDERVIAIKDINPAAPVHVLIIPKEHIA 81
Query: 61 SLSEAGDEDAEILGHLMVTASKLAKKQGL-DNGYRLVVNNGRHGAQSVYHLHIHVMGGRQ 119
++ E + +A+IL + A+K+A+ G+ + GYRL+ N G Q+V+HLH H++GG
Sbjct: 82 NVKEINESNAQILIDIHKAANKVAEDLGIAEKGYRLITNCGVAAGQTVFHLHYHLLGGVD 141
Query: 120 L 120
+
Sbjct: 142 M 142
>3n1s_A HIT-like protein HINT; histidine triad nucleotide binding protein,
GMP, hydro; HET: 5GP; 1.45A {Escherichia coli} PDB:
3n1t_A*
Length = 119
Score = 190 bits (484), Expect = 3e-64
Identities = 48/107 (44%), Positives = 79/107 (73%), Gaps = 1/107 (0%)
Query: 15 DTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILG 74
+TIF +I+R+EIP + +++DD AF DI+P+AP H L+IP IP++++ E + LG
Sbjct: 4 ETIFSKIIRREIPSDIVYQDDLVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQALG 63
Query: 75 HLMVTASKLAKKQGLD-NGYRLVVNNGRHGAQSVYHLHIHVMGGRQL 120
++ A+K+A+++G+ +GYRL++N RHG Q VYH+H+H++GGR L
Sbjct: 64 RMITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHMHLLGGRPL 110
>3o0m_A HIT family protein; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, hydrola structural genomics; HET: AMP;
1.90A {Mycobacterium smegmatis str}
Length = 149
Score = 175 bits (446), Expect = 4e-58
Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Query: 12 PGGDTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAE 71
+F I+ + P I+ED+ + DI P H LVIP+ L++ E
Sbjct: 3 GSMSCVFCAIVSGDAPAIRIYEDENFLGILDIRPFTRGHTLVIPKTHTVDLTDTPPETVA 62
Query: 72 ILGHLMVTASKLAKKQGLD-NGYRLVVNNGRHGAQSVYHLHIHVMGGR---QLRWPPG 125
+ + ++ A++ GL +G + +N+G+ Q+V+H+H+HV+ R +L + G
Sbjct: 63 GMAAVGQRIARAARESGLHADGNNIAINDGKAAFQTVFHIHLHVVPRRNGDKLSFAKG 120
>3ksv_A Uncharacterized protein; HIT family, structural genomics,
structural genomics of PATH protozoa consortium, SGPP,
unknown function; 1.90A {Leishmania major}
Length = 149
Score = 173 bits (441), Expect = 2e-57
Identities = 40/116 (34%), Positives = 60/116 (51%), Gaps = 6/116 (5%)
Query: 15 DTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILG 74
+ IF +I++ +IPC + E K +AF DINP + H LVIP++ L E G EDA +G
Sbjct: 12 NCIFCKIIKGDIPCAKVAETSKALAFMDINPLSRGHMLVIPKEHASCLHELGMEDAADVG 71
Query: 75 HLMVTASKLAKKQGLDNGYRLVVNNGRHGAQSVYHLHIHVM------GGRQLRWPP 124
L+ AS+ Y ++ NNG Q V H+H H++ G ++ W
Sbjct: 72 VLLAKASRAVAGPDGSMQYNVLQNNGSLAHQEVPHVHFHIIPKTDEKTGLKIGWDT 127
>3lb5_A HIT-like protein involved in cell-cycle regulatio; niaid, seattle
structural genomics center for infectious DIS ssgcid,
histidine triad; 1.90A {Bartonella henselae}
Length = 161
Score = 165 bits (420), Expect = 4e-54
Identities = 40/123 (32%), Positives = 62/123 (50%), Gaps = 7/123 (5%)
Query: 5 EKAAQAAPGG-------DTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRK 57
+A PG + IF +++R EIP ++EDD +AF DI P+AP H LVIP+K
Sbjct: 12 LEAQTQGPGSMKQAYDNNNIFAKLIRNEIPSVRVYEDDDVIAFMDIMPQAPGHTLVIPKK 71
Query: 58 PIPSLSEAGDEDAEILGHLMVTASKLAKKQGLDNGYRLVVNNGRHGAQSVYHLHIHVMGG 117
+L +A E + + +K KK +G ++ N Q+VYHLH H++
Sbjct: 72 GSRNLLDADTETLFPVIKAVQKIAKAVKKAFQADGITVMQFNEAASQQTVYHLHFHIIPR 131
Query: 118 RQL 120
+
Sbjct: 132 MEG 134
>1y23_A HIT, histidine triad protein; HIT protein, PKCI-1, cell-cycle
regulation, NYSGXRC, structural genomics, protein
structure initiative; 2.30A {Bacillus subtilis} SCOP:
d.13.1.1
Length = 145
Score = 164 bits (416), Expect = 1e-53
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 6/116 (5%)
Query: 15 DTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILG 74
+ IF +I+ +IP ++ED+ +AF DI+ H LVIP+ I ++ E DE A+
Sbjct: 6 NCIFCKIIAGDIPSAKVYEDEHVLAFLDISQVTKGHTLVIPKTHIENVYEFTDELAKQYF 65
Query: 75 HLMVTASKLAKKQGLDNGYRLVVNNGRHGAQSVYHLHIHVM------GGRQLRWPP 124
H + ++ + + G + NNG QSV+H H+H++ G W
Sbjct: 66 HAVPKIARAIRDEFEPIGLNTLNNNGEKAGQSVFHYHMHIIPRYGKGDGFGAVWKT 121
>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium
paratuberculosis, STR genomics; 1.90A {Mycobacterium
avium subsp}
Length = 138
Score = 160 bits (408), Expect = 2e-52
Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 5/108 (4%)
Query: 15 DTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILG 74
+IF +I+ +E+P F++EDD VAF I P H LV+PR+ I + + D+
Sbjct: 6 ASIFTKIINRELPGRFVYEDDDVVAFLTIEPMTQGHTLVVPREEIDNWQDV---DSAAFN 62
Query: 75 HLMVTASKLAKKQGLDNGYRLVVNNGRHGAQSVYHLHIHVMGGRQLRW 122
+M + + K + +R + V HLH+HV R L
Sbjct: 63 RVMGVSQLIGKA--VCKAFRTERSGLIIAGLEVPHLHVHVFPTRSLSD 108
>3imi_A HIT family protein; structural genomics, infectious diseases for
structural genomics of infectious diseases, unknown FUN
csgid; 2.01A {Bacillus anthracis str}
Length = 147
Score = 157 bits (400), Expect = 3e-51
Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 6/116 (5%)
Query: 15 DTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILG 74
+ IF +I+ +I C+ ++ED+ +AF DI+ H LVIP+ + E A +
Sbjct: 10 NCIFCKIIDGQILCSKVYEDEHVLAFLDISQVTKGHTLVIPKVHKQDIFALTPEIASHIF 69
Query: 75 HLMVTASKLAKKQGLDNGYRLVVNNGRHGAQSVYHLHIHVMG------GRQLRWPP 124
++ + K + G+ L+ NNG Q+V+H H+H++ G W
Sbjct: 70 SVVPKIANAIKAEFNPVGFNLLNNNGEKAGQTVFHFHLHLIPRYGENDGFGAVWKS 125
>3l7x_A SMU.412C, putative HIT-like protein involved in cell-cycle
regulation; 1.70A {Streptococcus mutans}
Length = 173
Score = 151 bits (383), Expect = 3e-48
Identities = 29/116 (25%), Positives = 57/116 (49%), Gaps = 6/116 (5%)
Query: 15 DTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILG 74
D +F +I+ +IP + ++ED+ +AF DI+ H LVIP++ + + E A L
Sbjct: 37 DCLFCKIVAGDIPSSKVYEDEDVLAFLDISQATKGHTLVIPKEHVRNALEMTQTQAANLF 96
Query: 75 HLMVTASKLAKKQGLDNGYRLVVNNGRHGAQSVYHLHIHVM------GGRQLRWPP 124
+ ++ +K +G ++ NN Q+V+H H+H++ +R+
Sbjct: 97 ARIPKIARALQKATKADGLNIINNNEETAGQTVFHAHVHLVPRFADSDEFDIRFVQ 152
>2eo4_A 150AA long hypothetical histidine triad nucleotid protein; HIT
family, structural genomics, NPPSFA; 1.80A {Sulfolobus
tokodaii}
Length = 149
Score = 148 bits (376), Expect = 2e-47
Identities = 33/109 (30%), Positives = 55/109 (50%)
Query: 17 IFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHL 76
F I+ +E+ F++ED+K A D P + H LVIP+K + EA ++ L +
Sbjct: 2 TFCSIINRELEGYFVYEDEKFAAILDKYPVSLGHTLVIPKKHFENYLEADEDTLAELAKV 61
Query: 77 MVTASKLAKKQGLDNGYRLVVNNGRHGAQSVYHLHIHVMGGRQLRWPPG 125
+ S K +G RL+ N GR Q ++HLH+H++ + +P
Sbjct: 62 VKLVSLGIKDAVKADGLRLLTNIGRSAGQVIFHLHVHIIPTWEGDYPDI 110
>3r6f_A HIT family protein; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
protozoan parasite; 1.85A {Encephalitozoon cuniculi}
Length = 135
Score = 130 bits (329), Expect = 2e-40
Identities = 36/117 (30%), Positives = 52/117 (44%), Gaps = 14/117 (11%)
Query: 15 DTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILG 74
IF + RK N I+E D+ A D P + HFLVIP+ P L E+ L
Sbjct: 7 GCIFCTLYRKG--ANIIYETDRLFALIDRYPLSKGHFLVIPKAHHPYLHNYKPEE---LS 61
Query: 75 HLMVTASKLAKKQGLDNGYRLVVNNGRHGAQSVYHLHIHVMGGRQ------LRWPPG 125
++ T L +K G + Y ++ NNG Q V+H+H HV+ + W
Sbjct: 62 GVLDTIRHLVQKFGFE-RYNILQNNG--NHQEVFHVHFHVIPFVSADERLMINWKAK 115
>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding
protein, DNA deadenylas hydrolase; 1.80A
{Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*
Length = 204
Score = 111 bits (279), Expect = 3e-32
Identities = 24/118 (20%), Positives = 42/118 (35%), Gaps = 15/118 (12%)
Query: 15 DTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKP---IPSLSEAGDEDAE 71
D + I E N I+ DD V D+ P++ +H L++ R P E +
Sbjct: 8 DNLKVYIESPESYKNVIYYDDDVVLVRDMFPKSKMHLLLMTRDPHLTHVHPLEIMMKHRS 67
Query: 72 ILGHLMVTASKLAKK------------QGLDNGYRLVVNNGRHGAQSVYHLHIHVMGG 117
++ L+ Q + + G H S+ +LH+H+M
Sbjct: 68 LVEKLVSYVQGDLSGLIFDEARNCLSQQLTNEALCNYIKVGFHAGPSMNNLHLHIMTL 125
>1fit_A FragIle histidine protein; FHIT, fragIle histidine triad protein,
putative human tumor suppressor, advanced photon source,
APS; HET: FRU; 1.85A {Homo sapiens} SCOP: d.13.1.1 PDB:
1fhi_A* 2fit_A* 3fit_A* 4fit_A 5fit_A* 6fit_A* 2fhi_A*
Length = 147
Score = 72.4 bits (178), Expect = 1e-17
Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 2/98 (2%)
Query: 18 FGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLM 77
FG+ L K P + + A + P P H LV P +P+ + ++ L
Sbjct: 5 FGQHLIK--PSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTT 62
Query: 78 VTASKLAKKQGLDNGYRLVVNNGRHGAQSVYHLHIHVM 115
+ +K + +G Q+V H+H+HV+
Sbjct: 63 QRVGTVVEKHFHGTSLTFSMQDGPEAGQTVKHVHVHVL 100
>3ano_A AP-4-A phosphorylase; diadenosine polyphosphate, HIT transferase;
HET: PG4; 1.89A {Mycobacterium tuberculosis}
Length = 218
Score = 65.4 bits (159), Expect = 2e-14
Identities = 23/115 (20%), Positives = 47/115 (40%), Gaps = 2/115 (1%)
Query: 2 SEVEKAAQAAPGGDTIFGRILRKEIPCNFI-HEDDKCVAFNDINPEAPIHFLVIPRKPIP 60
+ V++ ++ F I + + A ++ P P H +V+P + +
Sbjct: 57 APVKRDPNSSASPAQPFTEIPQLSDEEGLVVARGKLVYAVLNLYPYNPGHLMVVPYRRVS 116
Query: 61 SLSEAGDEDAEILGHLMVTASKLAKKQGLDNGYRLVVNNGRHGAQSV-YHLHIHV 114
L + D ++ L A ++ K +G+ + +N G S+ HLH+HV
Sbjct: 117 ELEDLTDLESAELMAFTQKAIRVIKNVSRPHGFNVGLNLGTSAGGSLAEHLHVHV 171
>2oik_A Histidine triad (HIT) protein; HIT-like fold, structural genomics,
joint center for structu genomics, JCSG; HET: MSE; 1.65A
{Methylobacillus flagellatus} SCOP: d.13.1.1
Length = 154
Score = 55.2 bits (133), Expect = 8e-11
Identities = 13/87 (14%), Positives = 31/87 (35%), Gaps = 5/87 (5%)
Query: 29 NFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQG 88
+ +D C + N + P VI + + +S+ + + L ++ + ++
Sbjct: 21 EILWQDALCRVVHVENQDYPGFCRVILNRHVKEMSDLRPAERDHLMLVVFAVEEAVREVM 80
Query: 89 LDNGYRLVVNNGRHGAQSVYHLHIHVM 115
+ N H+H HV+
Sbjct: 81 RPDKI-----NLASLGNMTPHVHWHVI 102
>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-biology; HET: MSE; 1.20A {Marinobacter aquaeolei}
Length = 137
Score = 48.1 bits (114), Expect = 3e-08
Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 5/88 (5%)
Query: 28 CNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQ 87
+ + E C + P LV I + E +E + L S+ +
Sbjct: 13 THKLGESRLCDVLLMNDNTWPWVILVPRVSGIREIYELPNEQQQRLLFESSALSEGMME- 71
Query: 88 GLDNGYRLVVNNGRHGAQSVYHLHIHVM 115
L G ++ N G V LH+H +
Sbjct: 72 -LFGGDKM--NVAALG-NMVPQLHLHHI 95
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM,
nitrilase, nucleotide-binding protein, cancer; 2.80A
{Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1
Length = 440
Score = 47.4 bits (113), Expect = 1e-07
Identities = 19/85 (22%), Positives = 38/85 (44%)
Query: 31 IHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQGLD 90
+ F ++ P H LV P++ +P L++ D + L + + +K
Sbjct: 312 FYSTPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDAETADLFIVAKKVQAMLEKHHNV 371
Query: 91 NGYRLVVNNGRHGAQSVYHLHIHVM 115
+ V +G+ Q+V H+HIH++
Sbjct: 372 TSTTICVQDGKDAGQTVPHVHIHIL 396
>3i4s_A Histidine triad protein; hydrolase, phosphatase, HIT superfamily,
PSI-2, NYSGXRC, STR genomics, protein structure
initiative; 1.75A {Bradyrhizobium japonicum}
Length = 149
Score = 45.4 bits (107), Expect = 4e-07
Identities = 13/88 (14%), Positives = 25/88 (28%), Gaps = 5/88 (5%)
Query: 28 CNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQ 87
I + + P LV R + + + L + S+ K+
Sbjct: 18 TIDIGDLPLSKVLVIKDANYPWLLLVPRRPDAVEIIDLDEVQQAQLMTEISRVSRALKEI 77
Query: 88 GLDNGYRLVVNNGRHGAQSVYHLHIHVM 115
+ N V LH+H++
Sbjct: 78 -----TKCDKLNIAALGNLVPQLHVHII 100
>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure
initiative, northeast structural genomics consortium,
NESG; 1.50A {Vibrio fischeri ES114}
Length = 149
Score = 44.3 bits (104), Expect = 8e-07
Identities = 14/88 (15%), Positives = 23/88 (26%), Gaps = 5/88 (5%)
Query: 28 CNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQ 87
C + C P LV + + + DE ++L +
Sbjct: 13 CIVLGNLPLCKVLLIKEDIGPWLILVPRIEELKEIHHMTDEQQIQFIKESSAVAQLLEDN 72
Query: 88 GLDNGYRLVVNNGRHGAQSVYHLHIHVM 115
+ N V LHIH +
Sbjct: 73 FSPDKI-----NIGALGNLVPQLHIHHI 95
>3nrd_A Histidine triad (HIT) protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE; 2.06A {Sinorhizobium meliloti}
Length = 135
Score = 43.8 bits (103), Expect = 1e-06
Identities = 18/88 (20%), Positives = 24/88 (27%), Gaps = 5/88 (5%)
Query: 28 CNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQ 87
I C + P LV R I + E D +L + KK
Sbjct: 15 GIPIGTLGLCQMRLMNDRRWPWLILVPQRADIKEVFELTPLDQAMLTFETNLVAAGLKKA 74
Query: 88 GLDNGYRLVVNNGRHGAQSVYHLHIHVM 115
N V LH+HV+
Sbjct: 75 TGAEKI-----NIGALGNIVRQLHVHVI 97
>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase,
galactose metabolism; HET: GDU; 1.80A {Escherichia coli}
SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A*
Length = 348
Score = 43.1 bits (100), Expect = 6e-06
Identities = 13/108 (12%), Positives = 34/108 (31%), Gaps = 5/108 (4%)
Query: 13 GGDTIFGRILRKEI--PCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDA 70
+ +++E+ + E + +A P L++P+ + +++ D
Sbjct: 193 QKSPMLVDYVQRELADGSRTVVETEHWLAVVPYWAAWPFETLLLPKAHVLRITDLTDAQR 252
Query: 71 EILGHLMV-TASKLAKKQGLDNGYRLVVNNGRHGAQSV--YHLHIHVM 115
L + S+ Y + + + + LH H
Sbjct: 253 SDLALALKKLTSRYDNLFQCSFPYSMGWHGAPFNGEENQHWQLHAHFY 300
>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc,
AMP, structural genomics, protein structure initiative,
CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP:
d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A*
Length = 351
Score = 40.6 bits (94), Expect = 4e-05
Identities = 16/89 (17%), Positives = 27/89 (30%), Gaps = 4/89 (4%)
Query: 31 IHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQGLD 90
I E V+ P +IP+ D A LG L+ + KQ D
Sbjct: 228 IDESSHFVSVAPFAATYPFEIWIIPKDHSSHFHHLDDVKAVDLGGLLKLMLQKIAKQLND 287
Query: 91 NGYRLVVN----NGRHGAQSVYHLHIHVM 115
Y +++ H + ++
Sbjct: 288 PPYNYMIHTSPLKVTESQLPYTHWFLQIV 316
>3bl9_A Scavenger mRNA-decapping enzyme DCPS; ligand complex, cytoplasm,
hydrolase, nonsense-mediated mRNA decay, nucleus,
polymorphism, structural genomics; HET: DD2; 1.80A {Homo
sapiens} SCOP: d.13.1.3 d.246.1.1 PDB: 3bl7_A* 3bla_A*
Length = 301
Score = 39.1 bits (91), Expect = 1e-04
Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 7/88 (7%)
Query: 33 EDDKCVAFNDIN----PEAPIHFLVIPRKP-IPSLSEAGDEDAEILGHLMVTASKLAKKQ 87
D V D+ ++ + I + I SL + E +L +++ + ++
Sbjct: 160 PSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPEHLPLLRNILHQGQEAILQR 219
Query: 88 GLDNGYRLVVNNGRHGAQSVYHLHIHVM 115
G L V H S YHLH+H
Sbjct: 220 YRMKGDHLRV--YLHYLPSYYHLHVHFT 245
>1vlr_A MRNA decapping enzyme; 16740816, structural genomics, JCSG, protein
structure initiative, PSI, joint center for structural
genomics; 1.83A {Mus musculus} SCOP: d.13.1.3 d.246.1.1
PDB: 1xmm_B* 1xml_B 1st0_B* 1st4_B*
Length = 350
Score = 37.0 bits (85), Expect = 7e-04
Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 11/90 (12%)
Query: 33 EDDKCVAFNDI-----NPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASK-LAKK 86
D V D+ + + R+ I SL + E +L +++ + + K+
Sbjct: 207 PSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPEHLPLLRNILREGQEAILKR 266
Query: 87 QGLDNG-YRLVVNNGRHGAQSVYHLHIHVM 115
+ R+ H S YHLH+H
Sbjct: 267 YQVTGDRLRV----YLHYLPSYYHLHVHFT 292
>2pof_A CDP-diacylglycerol pyrophosphatase; NYSGXRC, PFAM02611, PSI-2,
phospholipid biosynthesis structural genomics, protein
structure initiative; 1.40A {Escherichia coli} SCOP:
d.13.1.4
Length = 227
Score = 30.3 bits (68), Expect = 0.13
Identities = 23/101 (22%), Positives = 35/101 (34%), Gaps = 24/101 (23%)
Query: 27 PCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGH----LMVTA-- 80
PC + + V D P+ +L++P I G E + A
Sbjct: 30 PCAEVKPNAGYVVLKD--LNGPLQYLLMPTYRIN-----GTESPLLTDPSTPNFFWLAWQ 82
Query: 81 --SKLAKKQGL---DNGYRLVVN--NGRHGAQSVYHLHIHV 114
++KK G D L +N GR + H HIH+
Sbjct: 83 ARDFMSKKYGQPVPDRAVSLAINSRTGR----TQNHFHIHI 119
>3dsb_A Putative acetyltransferase; APC60368.2, ST genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics,
MCSG; HET: MSE; 1.48A {Clostridium difficile}
Length = 157
Score = 27.5 bits (61), Expect = 0.99
Identities = 8/33 (24%), Positives = 11/33 (33%)
Query: 76 LMVTASKLAKKQGLDNGYRLVVNNGRHGAQSVY 108
L + K G RL V A++ Y
Sbjct: 105 LFNYIKNICDKDENIVGMRLYVEKENINAKATY 137
>3ch0_A Glycerophosphodiester phosphodiesterase; YP_677622.1,
glycerophosphoryl diester phosphodiesterase, ST
genomics; HET: MSE CIT GOL; 1.50A {Cytophaga
hutchinsonii atcc 33406}
Length = 272
Score = 25.8 bits (57), Expect = 3.8
Identities = 8/55 (14%), Positives = 18/55 (32%), Gaps = 4/55 (7%)
Query: 39 AFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILG--HLMVTAS--KLAKKQGL 89
+ P+ + +LV + + E + +V+ A K G+
Sbjct: 183 YMHSQYPDIKLSYLVETKGTLKKQLEKLSFTPAVYSPDVTLVSKKDIDAAHKLGM 237
>1xfi_A Unknown protein; structural genomics, protein structure initiative,
CESG, AT2G17340, center for eukaryotic structural
genomics; 1.70A {Arabidopsis thaliana} SCOP: e.50.1.1
PDB: 2q40_A
Length = 367
Score = 25.4 bits (55), Expect = 5.6
Identities = 9/58 (15%), Positives = 22/58 (37%), Gaps = 5/58 (8%)
Query: 43 INPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQGLDNGYRLVVNNG 100
+ A + +PS+++ + + L + + G+D L+ N+G
Sbjct: 238 LRRGAQVVLAA---NELPSINDITCTELTEI--LSQLKDENGQLLGVDTSKLLIANSG 290
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling
proteins; 1.15A {Saccharomyces cerevisiae} SCOP:
d.15.1.1 PDB: 2bwe_S
Length = 77
Score = 24.1 bits (53), Expect = 7.0
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 13/43 (30%)
Query: 17 IF-GRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKP 58
I+ G+IL +DD+ V I +H LV +P
Sbjct: 47 IYSGKIL----------KDDQTVESYHIQDGHSVH-LVK-SQP 77
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM,
riken structural genomics/proteomics initiative, RSGI,
structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Length = 95
Score = 24.2 bits (53), Expect = 7.6
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 11/46 (23%)
Query: 17 IF-GRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPS 61
I+ G+IL DD + I+ + + +V K + +
Sbjct: 47 IYAGKIL----------NDDTALKEYKIDEKNFVVVMVTKPKAVST 82
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.139 0.429
Gapped
Lambda K H
0.267 0.0824 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,067,666
Number of extensions: 116059
Number of successful extensions: 280
Number of sequences better than 10.0: 1
Number of HSP's gapped: 250
Number of HSP's successfully gapped: 37
Length of query: 125
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 43
Effective length of database: 4,412,271
Effective search space: 189727653
Effective search space used: 189727653
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.2 bits)