RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3327
(125 letters)
>d1kpfa_ d.13.1.1 (A:) Protein kinase C inhibitor-1, PKCI-1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 111
Score = 132 bits (332), Expect = 8e-42
Identities = 68/111 (61%), Positives = 86/111 (77%)
Query: 15 DTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILG 74
DTIFG+I+RKEIP I EDD+C+AF+DI+P+AP HFLVIP+K I +S A D+D +LG
Sbjct: 1 DTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLLG 60
Query: 75 HLMVTASKLAKKQGLDNGYRLVVNNGRHGAQSVYHLHIHVMGGRQLRWPPG 125
HLM+ K A GL+ GYR+VVN G G QSVYH+H+HV+GGRQ+ WPPG
Sbjct: 61 HLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMHWPPG 111
>d1xqua_ d.13.1.1 (A:) Putative hydrolase {Clostridium thermocellum
[TaxId: 1515]}
Length = 113
Score = 100 bits (250), Expect = 2e-29
Identities = 40/107 (37%), Positives = 72/107 (67%), Gaps = 1/107 (0%)
Query: 15 DTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILG 74
+ +F +I+++E+P +ED++ +A DINP AP+H L+IP++ I ++ E + +A+IL
Sbjct: 3 NCVFCKIIKRELPSTIYYEDERVIAIKDINPAAPVHVLIIPKEHIANVKEINESNAQILI 62
Query: 75 HLMVTASKLAKKQGL-DNGYRLVVNNGRHGAQSVYHLHIHVMGGRQL 120
+ A+K+A+ G+ + GYRL+ N G Q+V+HLH H++GG +
Sbjct: 63 DIHKAANKVAEDLGIAEKGYRLITNCGVAAGQTVFHLHYHLLGGVDM 109
>d1y23a_ d.13.1.1 (A:) Hit {Bacillus subtilis [TaxId: 1423]}
Length = 139
Score = 89.2 bits (220), Expect = 1e-24
Identities = 32/101 (31%), Positives = 55/101 (54%)
Query: 15 DTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILG 74
+ IF +I+ +IP ++ED+ +AF DI+ H LVIP+ I ++ E DE A+
Sbjct: 2 NCIFCKIIAGDIPSAKVYEDEHVLAFLDISQVTKGHTLVIPKTHIENVYEFTDELAKQYF 61
Query: 75 HLMVTASKLAKKQGLDNGYRLVVNNGRHGAQSVYHLHIHVM 115
H + ++ + + G + NNG QSV+H H+H++
Sbjct: 62 HAVPKIARAIRDEFEPIGLNTLNNNGEKAGQSVFHYHMHII 102
>d1emsa1 d.13.1.1 (A:281-440) NIT-FHIT fusion protein, C-terminal
domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Length = 160
Score = 83.0 bits (204), Expect = 6e-22
Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
Query: 15 DTIFGRILRKEIPCNFI-HEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEIL 73
+T + R IP + I + F ++ P H LV P++ +P L++ D + L
Sbjct: 15 ETGGLKFARFNIPADHIFYSTPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDAETADL 74
Query: 74 GHLMVTASKLAKKQGLDNGYRLVVNNGRHGAQSVYHLHIHVMGGRQ 119
+ + +K + V +G+ Q+V H+HIH++ R
Sbjct: 75 FIVAKKVQAMLEKHHNVTSTTICVQDGKDAGQTVPHVHIHILPRRA 120
>d1fita_ d.13.1.1 (A:) FHIT (fragile histidine triad protein) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 146
Score = 77.2 bits (189), Expect = 9e-20
Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 2/98 (2%)
Query: 18 FGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLM 77
FG+ L K P + + A + P P H LV P +P+ + ++ L
Sbjct: 4 FGQHLIK--PSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTT 61
Query: 78 VTASKLAKKQGLDNGYRLVVNNGRHGAQSVYHLHIHVM 115
+ +K + +G Q+V H+H+HV+
Sbjct: 62 QRVGTVVEKHFHGTSLTFSMQDGPEAGQTVKHVHVHVL 99
>d1guqa2 d.13.1.2 (A:178-348) Galactose-1-phosphate
uridylyltransferase {Escherichia coli [TaxId: 562]}
Length = 171
Score = 71.2 bits (174), Expect = 3e-17
Identities = 14/115 (12%), Positives = 34/115 (29%), Gaps = 6/115 (5%)
Query: 14 GDTIFGRILRKEIPCN--FIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAE 71
+ +++E+ + E + +A P L++P+ + +++ D
Sbjct: 17 KSPMLVDYVQRELADGSRTVVETEHWLAVVPYWAAWPFETLLLPKAHVLRITDLTDAQRS 76
Query: 72 ILGHLMVTASK-LAKKQGLDNGYRLVVNNGRHGA--QSVYHLHIHVMGGRQLRWP 123
L + + Y + + + LH H LR
Sbjct: 77 DLALALKKLTSRYDNLFQCSFPYSMGWHGAPFNGEENQHWQLHAHFY-PPLLRSA 130
>d1vlra1 d.13.1.3 (A:146-337) mRNA decapping enzyme DcpS C-terminal
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 192
Score = 65.9 bits (161), Expect = 3e-15
Identities = 19/110 (17%), Positives = 43/110 (39%), Gaps = 15/110 (13%)
Query: 17 IFGRILRKEIPCNFIHEDDKC----VAFNDIN----PEAPIHFLVIPRKP-IPSLSEAGD 67
++ + +K + E+ V D+ ++ + I + I SL +
Sbjct: 30 VYNILDKKAEADRIVFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTP 89
Query: 68 EDAEILGHLMVTASK-LAKKQGLD-NGYRLVVNNGRHGAQSVYHLHIHVM 115
E +L +++ + + K+ + + R+ + H S YHLH+H
Sbjct: 90 EHLPLLRNILREGQEAILKRYQVTGDRLRVYL----HYLPSYYHLHVHFT 135
>d2oika1 d.13.1.1 (A:6-144) Histidine triad protein Mfla2506
{Methylobacillus flagellatus [TaxId: 405]}
Length = 139
Score = 54.9 bits (131), Expect = 3e-11
Identities = 14/92 (15%), Positives = 31/92 (33%), Gaps = 5/92 (5%)
Query: 24 KEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKL 83
+ +D C + N + P VI + + +S+ + + L ++ +
Sbjct: 10 TTAGGEILWQDALCRVVHVENQDYPGFCRVILNRHVKEMSDLRPAERDHLMLVVFAVEEA 69
Query: 84 AKKQGLDNGYRLVVNNGRHGAQSVYHLHIHVM 115
++ R N H+H HV+
Sbjct: 70 VRE-----VMRPDKINLASLGNMTPHVHWHVI 96
>d1z84a2 d.13.1.2 (A:196-351) Galactose-1-phosphate
uridylyltransferase {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 156
Score = 54.7 bits (131), Expect = 4e-11
Identities = 21/116 (18%), Positives = 32/116 (27%), Gaps = 9/116 (7%)
Query: 14 GDTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEIL 73
G K I E V+ P +IP+ D A L
Sbjct: 19 GKCCLCEAKSKHF---VIDESSHFVSVAPFAATYPFEIWIIPKDHSSHFHHLDDVKAVDL 75
Query: 74 GHLMVTASKLAKKQGLDNGYRLVVN----NGRHGAQSVYHLHIHVMGGRQLRWPPG 125
G L+ + KQ D Y +++ H + ++ QL G
Sbjct: 76 GGLLKLMLQKIAKQLNDPPYNYMIHTSPLKVTESQLPYTHWFLQIV--PQLSGVGG 129
>d2pofa1 d.13.1.4 (A:31-250) CDP-diacylglycerol pyrophosphatase CDH
{Escherichia coli [TaxId: 562]}
Length = 220
Score = 34.1 bits (78), Expect = 0.002
Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 8/93 (8%)
Query: 27 PCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPI-----PSLSEAGDEDAEILGHLMVTAS 81
PC + + V D+N P+ +L++P I P L++ + L
Sbjct: 24 PCAEVKPNAGYVVLKDLN--GPLQYLLMPTYRINGTESPLLTDPSTPNFFWLAWQARDFM 81
Query: 82 KLAKKQGLDNGYRLVVNNGRHGAQSVYHLHIHV 114
Q + + + N R G ++ H HIH+
Sbjct: 82 SKKYGQPVPDRAVSLAINSRTG-RTQNHFHIHI 113
>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 116
Score = 26.1 bits (57), Expect = 0.88
Identities = 3/39 (7%), Positives = 11/39 (28%)
Query: 33 EDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAE 71
+ + + ++ R+ +P + G
Sbjct: 75 HGNVTLGALKLPFGKTTVMHLVARETLPEPNSQGQRSGP 113
>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 172
Score = 24.9 bits (54), Expect = 3.0
Identities = 4/37 (10%), Positives = 12/37 (32%)
Query: 18 FGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVI 54
+G I ++ +D + + P+ +
Sbjct: 10 YGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKE 46
>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B
(Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 23.8 bits (51), Expect = 4.0
Identities = 8/39 (20%), Positives = 16/39 (41%)
Query: 23 RKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPS 61
+K I I DD + I+ + + +V K + +
Sbjct: 44 QKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 82
>d2fyxa1 d.58.57.1 (A:1-130) Putative transposase DR0177
{Deinococcus radiodurans [TaxId: 1299]}
Length = 130
Score = 23.9 bits (51), Expect = 5.8
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 101 RHGAQSVYHLHIHV 114
+ G VY L H+
Sbjct: 2 KKGRGYVYKLEYHL 15
>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus
[TaxId: 2180]}
Length = 171
Score = 23.8 bits (51), Expect = 6.0
Identities = 4/37 (10%), Positives = 13/37 (35%)
Query: 18 FGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVI 54
+G + ++ +D K + + P+ +
Sbjct: 9 YGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALK 45
>d1tdpa_ a.29.8.1 (A:) Carnobacteriocin B2 immunity protein
{Carnobacterium piscicola [TaxId: 2751]}
Length = 111
Score = 23.5 bits (50), Expect = 7.9
Identities = 11/45 (24%), Positives = 18/45 (40%)
Query: 71 EILGHLMVTASKLAKKQGLDNGYRLVVNNGRHGAQSVYHLHIHVM 115
E L L+V + +N Y V++ G S Y H ++
Sbjct: 25 EFLSKLVVQCAGKLTASNSENSYIEVISLLSRGISSYYLSHKRII 69
>d1j8ba_ d.222.1.1 (A:) Hypothetical protein HI0442 {Haemophilus
influenzae [TaxId: 727]}
Length = 92
Score = 23.1 bits (50), Expect = 8.6
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 64 EAGDEDAEILGHLMVTASKLAKKQ 87
++D E+L L+ A A ++
Sbjct: 54 SLMEDDKEMLEDLIAAAFNDAVRR 77
>d3pmga1 c.84.1.1 (A:1-190) Phosphoglucomutase {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 190
Score = 23.5 bits (50), Expect = 9.6
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 76 LMVTASKLAKKQGLDNGYRLVVNNG 100
+++TAS D G + ++NG
Sbjct: 111 IILTASHNPGGPNGDFGIKFNISNG 135
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 22.6 bits (48), Expect = 9.8
Identities = 6/48 (12%), Positives = 12/48 (25%)
Query: 74 GHLMVTASKLAKKQGLDNGYRLVVNNGRHGAQSVYHLHIHVMGGRQLR 121
G + G+ V + G V H + + +
Sbjct: 25 GEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTID 72
>d2b3ga1 b.40.4.3 (A:3-114) Replication protein A 70 KDa subunit
(RPA70) {Human (Homo sapiens) [TaxId: 9606]}
Length = 112
Score = 23.1 bits (50), Expect = 9.8
Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 59 IPSLSEAGDEDAEILGHLMVTASKLAKKQGLDNGYRLVVNNGRHGAQSVY 108
I ++ + GD + + + L V + YRL++++G + S
Sbjct: 8 IAAIMQKGDTNIKPI--LQVINIRPITTGNSPPRYRLLMSDGLNTLSSFM 55
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.139 0.429
Gapped
Lambda K H
0.267 0.0525 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 500,101
Number of extensions: 21653
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 23
Length of query: 125
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 50
Effective length of database: 1,377,846
Effective search space: 68892300
Effective search space used: 68892300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.7 bits)