Query psy3328
Match_columns 337
No_of_seqs 216 out of 1591
Neff 9.2
Searched_HMMs 29240
Date Fri Aug 16 22:09:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3328.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3328hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qye_A TBC1 domain family memb 100.0 1.3E-51 4.3E-56 379.6 24.1 261 3-268 47-309 (331)
2 3hzj_A Rabgap1L, RAB GTPase-ac 100.0 1.8E-51 6.3E-56 375.1 19.8 251 3-267 21-275 (310)
3 2qq8_A TBC1 domain family memb 100.0 7.6E-51 2.6E-55 374.1 20.6 250 3-267 36-309 (334)
4 2qfz_A TBC1 domain family memb 100.0 7.2E-51 2.5E-55 376.5 19.7 270 3-275 38-341 (345)
5 1fkm_A Protein (GYP1P), ORF YO 100.0 2.1E-50 7.2E-55 378.5 20.2 267 3-272 21-384 (396)
6 4hl4_A TBC1 domain family memb 100.0 3.1E-47 1.1E-51 344.0 20.0 247 5-269 34-288 (292)
7 3qwl_A TBC1 domain family memb 100.0 3.8E-39 1.3E-43 288.8 12.2 237 4-270 39-286 (294)
8 1dxs_A P53-like transcription 52.3 11 0.00038 25.7 2.8 26 9-34 42-67 (80)
9 2jvd_A UPF0291 protein YNZC; s 44.8 32 0.0011 21.6 3.9 41 288-328 7-47 (54)
10 4hl4_A TBC1 domain family memb 37.5 33 0.0011 29.6 4.4 43 276-318 145-187 (292)
11 1rdt_E LXXLL motif coactivator 34.1 24 0.00084 18.1 1.7 18 3-20 8-25 (26)
12 3bhp_A UPF0291 protein YNZC; N 31.8 35 0.0012 21.9 2.6 41 288-328 7-47 (60)
13 3hzj_A Rabgap1L, RAB GTPase-ac 23.8 1.2E+02 0.0041 26.1 5.7 43 276-318 130-173 (310)
14 3qye_A TBC1 domain family memb 21.9 81 0.0028 27.5 4.2 43 276-318 164-207 (331)
15 2qfz_A TBC1 domain family memb 21.0 79 0.0027 27.8 3.9 43 275-318 186-228 (345)
No 1
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=100.00 E-value=1.3e-51 Score=379.58 Aligned_cols=261 Identities=25% Similarity=0.447 Sum_probs=234.9
Q ss_pred hhhHHHHHHhhcCCCCchHHHHHHHHhcChHhhhhhhhcccCCChhHHHHHHhcCCCCcccHHHHHhccCccCCCCcccc
Q psy3328 3 KKKKKKKEEAEIKHTSTFDFSIWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNKILDPDIGETIRTDLPRTFPENIFFR 82 (337)
Q Consensus 3 ~~~~klk~~~~~GiP~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~y~~ll~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~ 82 (337)
.+.++++.++++|||+.+|+.||+.++|+...... +..+.....+.|.++++.. .+..++|++|+.||+|++++|.
T Consensus 47 ~~~~~l~~~~~~GIP~~lR~~vW~~Llg~~~~~~~-~~~~~~~~~~~Y~~l~~~~---~~~~~~I~~Dv~Rt~~~~~~f~ 122 (331)
T 3qye_A 47 FDMEKMHSAVGQGVPRHHRGEIWKFLAEQFHLKHQ-FPSKQQPKDVPYKELLKQL---TSQQHAILIDLGRTFPTHPYFS 122 (331)
T ss_dssp CCHHHHHHHHHTCCCGGGHHHHHHHHHHHHHHHCC-CCSSSCCCCCCHHHHTTSC---CTTHHHHHHHHTTSSTTSTTTC
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHHhCcchhhhc-chhhhhhchHHHHHHHHhc---CCchhHHHHhhcccCCCchhhc
Confidence 35689999999999999999999999999775432 2223344678899998872 3457999999999999999998
Q ss_pred CCh-hhHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHhhcCChhHHHHHHHHHHHHh-hhhhccCCchhhhhhHHHHHH
Q psy3328 83 NSL-EHQQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKY-FSDYYTKTLTGVVRDIDVLSE 160 (337)
Q Consensus 83 ~~~-~~~~~L~~iL~~~~~~~~~i~Y~QG~~~i~~~ll~~~~~e~~af~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~ 160 (337)
... .++..|++||.+|+.+||++|||||||+|+|+|+.++ +|++|||||.++|..+ ++++|.++.++++..+..++.
T Consensus 123 ~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~i~a~ll~~~-~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 201 (331)
T 3qye_A 123 AQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHM-SEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSR 201 (331)
T ss_dssp STTCHHHHHHHHHHHHHHHHCTTTSSCTTHHHHHHHHHTTS-CHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHCCCccccccHHHHHHHHHHHh-hHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHH
Confidence 742 4689999999999999999999999999999999998 8999999999999886 789999999999999999999
Q ss_pred HHHhhChhhhhhhhhcCCCcchhhhHhHHHhcccCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcHHHHhCCCCHHHH
Q psy3328 161 LVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETVLRIWDCLFVEGPKILFRVSLTLIKLHERALLECEDFTTL 240 (337)
Q Consensus 161 ll~~~~P~L~~hl~~~~i~~~~~~~~W~~tlFs~~l~~~~~~~iwD~~l~~g~~~l~~~~lail~~~~~~il~~~~~~~i 240 (337)
+++.++|+|++||.+.|+.+..|+.+||+|+|++.+|++.++|+||.++++|+.+++++|+|++..++++|++++|++++
T Consensus 202 ll~~~~p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~i 281 (331)
T 3qye_A 202 LLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETI 281 (331)
T ss_dssp HHHHHCHHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHH
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred HHHHHcCCCCCcccccchhhhhHHHHHH
Q psy3328 241 VECFKSMVRSPAVLNCHSFMSGLNYIAA 268 (337)
Q Consensus 241 ~~~l~~~~~~~~~~d~~~~i~~a~~~~~ 268 (337)
+.+|++.++.....|++.++++|+.+..
T Consensus 282 l~~l~~~~p~~~~~di~~li~~A~~l~~ 309 (331)
T 3qye_A 282 VDFIKSTLPNLGLVQMEKTINQVFEMDI 309 (331)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHHHCCC
T ss_pred HHHHHhhCCCCCHHHHHHHHHHHHhCCc
Confidence 9999986555455788999999988764
No 2
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.8e-51 Score=375.07 Aligned_cols=251 Identities=25% Similarity=0.503 Sum_probs=227.7
Q ss_pred hhhHHHHHHhhcCCCCchHHHHHHHHhcChHhhhhhhhcccCCChhHHHHHHhcCCCCcccHHHHHhccCccCCCCcccc
Q psy3328 3 KKKKKKKEEAEIKHTSTFDFSIWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNKILDPDIGETIRTDLPRTFPENIFFR 82 (337)
Q Consensus 3 ~~~~klk~~~~~GiP~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~y~~ll~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~ 82 (337)
++.+++++++++|||+.+|+.||+.++|+...... .+.|..++++ ..+..++|++|+.||+|++++|.
T Consensus 21 ~~~~~l~~l~~~GIP~~lR~~vW~~llg~~~~~~~---------~~~Y~~l~~~---~~~~~~~I~~Dv~Rt~p~~~~f~ 88 (310)
T 3hzj_A 21 ARPKGLSTLVKSGVPEALRAEVWQLLAGCHDNQAM---------LDRYRILITK---DSAQESVITRDIHRTFPAHDYFK 88 (310)
T ss_dssp SCCTTHHHHHHHCCCGGGHHHHHHHHTTCCCCHHH---------HHHHHHHTTS---CCTTHHHHHHHHTTSSTTSTTTS
T ss_pred cCHHHHHHHHHCCCCHHHHHHHHHHHHCCCcchhH---------HHHHHHHHhc---cCCcHHHHHHHHHhhCCCchhhc
Confidence 46789999999999999999999999999764433 5678888776 34568999999999999999998
Q ss_pred CCh-hhHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHhhcCChhHHHHHHHHHHHHh-hhhhccCCchhhhhhHHHHHH
Q psy3328 83 NSL-EHQQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKY-FSDYYTKTLTGVVRDIDVLSE 160 (337)
Q Consensus 83 ~~~-~~~~~L~~iL~~~~~~~~~i~Y~QG~~~i~~~ll~~~~~e~~af~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~ 160 (337)
... .+++.|+|||.+|+.++|++|||||||+|||+|+.++ +|++|||||+++|.++ ++++|.++.+++...+..++.
T Consensus 89 ~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~iaa~lL~~~-~e~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 167 (310)
T 3hzj_A 89 DTGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHM-PEEQAFCVLVKIMYDYGLRDLYRNNFEDLHCKFYQLER 167 (310)
T ss_dssp STTSHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHS-CHHHHHHHHHHHHHTSCGGGGTHHHHHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHHCCCCCccCCHHHHHHHHHHhC-CHHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHH
Confidence 743 4699999999999999999999999999999999999 8999999999999876 779999999999999999999
Q ss_pred HHHhhChhhhhhhhhcCCCcchhhhHhHHHhcccCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcHHHHhCCCCHHHH
Q psy3328 161 LVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETVLRIWDCLFVEGPKILFRVSLTLIKLHERALLECEDFTTL 240 (337)
Q Consensus 161 ll~~~~P~L~~hl~~~~i~~~~~~~~W~~tlFs~~l~~~~~~~iwD~~l~~g~~~l~~~~lail~~~~~~il~~~~~~~i 240 (337)
+++.++|+|++||.+.|+++..|+.+||+|+|++.+|++.++|+||.++++|.++++++|+|++..++++|+++ |++++
T Consensus 168 ll~~~~p~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~~~l~~v~lail~~~~~~Ll~~-d~~~~ 246 (310)
T 3hzj_A 168 LMQEQLPDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGLNIIFHVALALLKTSKEDLLQA-DFEGA 246 (310)
T ss_dssp HHHHHCHHHHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTC-CHHHH
T ss_pred HHHHhChHHHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHcC-CHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997 99999
Q ss_pred HHHHH-cCCCCC-cccccchhhhhHHHHH
Q psy3328 241 VECFK-SMVRSP-AVLNCHSFMSGLNYIA 267 (337)
Q Consensus 241 ~~~l~-~~~~~~-~~~d~~~~i~~a~~~~ 267 (337)
+.+|+ ++|+.. ...|++.+++.|+.+.
T Consensus 247 l~~l~~~lp~~~~~~~d~~~ll~~A~~l~ 275 (310)
T 3hzj_A 247 LKFFRVQLPKRYRAEENARRLMEQACNIK 275 (310)
T ss_dssp HHHHHTHHHHTTCSHHHHHHHHHHHHHSC
T ss_pred HHHHHHhCcccccccccHHHHHHHHHhcC
Confidence 99997 555432 3468889988888774
No 3
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=100.00 E-value=7.6e-51 Score=374.11 Aligned_cols=250 Identities=20% Similarity=0.392 Sum_probs=221.9
Q ss_pred hhhHHHHHHhhcCCCCchHHHHHHHHhcChHhhhhhhhcccCCChhHHHHHHhcC-----------------------CC
Q psy3328 3 KKKKKKKEEAEIKHTSTFDFSIWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNK-----------------------IL 59 (337)
Q Consensus 3 ~~~~klk~~~~~GiP~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~y~~ll~~~-----------------------~~ 59 (337)
++.+++|+++++|||+.+|+.||+.++|+.... +++.|..+++.. ..
T Consensus 36 ~~~~~lr~l~~~GIP~~lR~~vW~~llg~~~~~----------~~~~y~~ll~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 105 (334)
T 2qq8_A 36 WCSRKVRDLWWQGIPPSVRGKVWSLAIGNELNI----------THELFDICLARAKERWRSLSTGGSEVENEDAGFSAAD 105 (334)
T ss_dssp CCCHHHHHHHHTCCCHHHHHHHHHHHHCCTTCC----------CHHHHHHHHHHHHHHC---------------------
T ss_pred cChHHHHHHHHCCCCHHHHHHHHHHHhCCcccc----------CHHHHHHHHHHHHHHHHHhccccccCccccccccccc
Confidence 456899999999999999999999999985211 234454443220 01
Q ss_pred CcccHHHHHhccCccCCCCccccCChhhHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHhhcCChhHHHHHHHHHHHHh
Q psy3328 60 DPDIGETIRTDLPRTFPENIFFRNSLEHQQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKY 139 (337)
Q Consensus 60 ~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~L~~iL~~~~~~~~~i~Y~QG~~~i~~~ll~~~~~e~~af~~~~~l~~~~ 139 (337)
..+..++|++||.||+|++++|.....+++.|+|||.+|+.+||++||||||++|||+|+.++ +|++|||||+++|++.
T Consensus 106 ~~~~~~~I~~Dv~RT~p~~~~F~~~~~~~~~L~rIL~aya~~~p~vgY~QGm~~iaa~lLl~~-~E~~aF~~~~~l~~~~ 184 (334)
T 2qq8_A 106 REASLELIKLDISRTFPNLCIFQQGGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNL-DTADAFIAFSNLLNKP 184 (334)
T ss_dssp -CCHHHHHHHHHHTSSGGGCSSSTTSTTHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHS-CHHHHHHHHHHHHTSH
T ss_pred chhHHHHHHHHHhhcCCCchhhcCCCchHHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHhcC-CHHHHHHHHHHHHHhh
Confidence 245679999999999999999987545699999999999999999999999999999999998 8999999999999986
Q ss_pred hh-hhccCCchhhhhhHHHHHHHHHhhChhhhhhhhhcCCCcchhhhHhHHHhcccCCChhhHHHHHHHHhhcCChHHHH
Q psy3328 140 FS-DYYTKTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETVLRIWDCLFVEGPKILFR 218 (337)
Q Consensus 140 ~~-~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~W~~tlFs~~l~~~~~~~iwD~~l~~g~~~l~~ 218 (337)
.+ +||..+.+++...+..++.+++.++|+|++||.+.|+++..|+.+||+|+|++.+|++.++|+||.++++|..++++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg~~~l~~ 264 (334)
T 2qq8_A 185 CQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFR 264 (334)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHCHHHHHH
T ss_pred hHHhccCCChHHHHHHHHHHHHHHHHHCHHHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHH
Confidence 54 88988899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcHHHHhCCCCHHHHHHHHHcCCCCCcccccchhhhhHHHHH
Q psy3328 219 VSLTLIKLHERALLECEDFTTLVECFKSMVRSPAVLNCHSFMSGLNYIA 267 (337)
Q Consensus 219 ~~lail~~~~~~il~~~~~~~i~~~l~~~~~~~~~~d~~~~i~~a~~~~ 267 (337)
+|+|++...+++|+++ |+++++.+|+++|.. +|++.+++.|..+.
T Consensus 265 valaiL~~~~~~Ll~~-d~~~il~~L~~lp~~---~d~~~l~~~a~~l~ 309 (334)
T 2qq8_A 265 TALGILKLFEDILTKM-DFIHMAQFLTRLPED---LPAEELFASIATIQ 309 (334)
T ss_dssp HHHHHHHHTHHHHHTC-CHHHHHHHHHSCCTT---CCHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhcC-CHHHHHHHHHhCCCc---CCHHHHHHHHHHcc
Confidence 9999999999999997 899999999999875 78899988877765
No 4
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=100.00 E-value=7.2e-51 Score=376.50 Aligned_cols=270 Identities=17% Similarity=0.277 Sum_probs=233.4
Q ss_pred hhhHHHHHHhhcCCCCchHHHHHHHHhcChHhhhhhhhcccCCChhHHHHHHhcC------CCCcccHHHHHhccCccCC
Q psy3328 3 KKKKKKKEEAEIKHTSTFDFSIWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNK------ILDPDIGETIRTDLPRTFP 76 (337)
Q Consensus 3 ~~~~klk~~~~~GiP~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~y~~ll~~~------~~~~~~~~~I~~Dv~Rt~~ 76 (337)
.+.+++|+++++|||+.+|+.||+.++|+.+...+.+.....+.++.|.++++.. ..+.+..++|++||.||+|
T Consensus 38 ~d~~~Lr~l~~~GiP~~~R~~vW~~llg~~p~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~I~~Dv~RT~p 117 (345)
T 2qfz_A 38 TDLEELRRLSWSGIPKPVRPMTWKLLSGYLPANVDRRPATLQRKQKEYFAFIEHYYDSRNDEVHQDTYRQIHIDIPRMSP 117 (345)
T ss_dssp CCHHHHHHHHTTCCCGGGHHHHHHHHTTSSCSBGGGHHHHHHHHHHHHHHHHHHC--------CHHHHHHHHHHGGGCSC
T ss_pred CCHHHHHHHHHCCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHhCcccCC
Confidence 3568999999999999999999999999865443333333333578899998763 1244578999999999999
Q ss_pred CCccccCChhhHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHhhcC------------------------ChhHHHHHH
Q psy3328 77 ENIFFRNSLEHQQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTK------------------------HEENTYWIF 132 (337)
Q Consensus 77 ~~~~f~~~~~~~~~L~~iL~~~~~~~~~i~Y~QG~~~i~~~ll~~~~------------------------~e~~af~~~ 132 (337)
+ ++|+. +.++..|+|||.+|+.+||++|||||||+|+++|+.++. +|++|||||
T Consensus 118 ~-~~F~~-~~~~~~L~rIL~~ya~~~p~vgY~QGm~~i~a~ll~v~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f 195 (345)
T 2qfz_A 118 E-ALILQ-PKVTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWCM 195 (345)
T ss_dssp H-HHHTS-HHHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHGGGCC-----CCCCTTSCHHHHHHHHHHHHHHH
T ss_pred c-cccCC-chHHHHHHHHHHHHHHHCCCCCcccChHHHHHHHHHHHHhhhcccccccccchhhhhhhhhhhHHHHHHHHH
Confidence 9 98987 567899999999999999999999999999999998763 289999999
Q ss_pred HHHHHHhhhhhccCCchhhhhhHHHHHHHHHhhChhhhhhhhhcCCCcchhhhHhHHHhcccCCChhhHHHHHHHHhhcC
Q psy3328 133 RSVINKYFSDYYTKTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETVLRIWDCLFVEG 212 (337)
Q Consensus 133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~W~~tlFs~~l~~~~~~~iwD~~l~~g 212 (337)
+++|++ ++++|..+.+++...+..++.+++.++|+|++||.+.|+++..|+.+||+|+|++++|++.++|+||.+|++|
T Consensus 196 ~~lm~~-~~~~y~~~~~~i~~~~~~l~~ll~~~dP~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g 274 (345)
T 2qfz_A 196 SKLLDG-IQDNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEP 274 (345)
T ss_dssp HHHHHT-SGGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTST
T ss_pred HHHHHc-cccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCC
Confidence 999998 4788888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ch---HHHHHHHHHHHHcHHHHhCCCCHHHHHHHHHcCCCCCc-ccccchhhhhHHHHHHHHHHhhh
Q psy3328 213 PK---ILFRVSLTLIKLHERALLECEDFTTLVECFKSMVRSPA-VLNCHSFMSGLNYIAALILLVTK 275 (337)
Q Consensus 213 ~~---~l~~~~lail~~~~~~il~~~~~~~i~~~l~~~~~~~~-~~d~~~~i~~a~~~~~~~~l~~k 275 (337)
+. +++++|+|++...+++|+++.|+++++.+|+++|.... ..|++.+++.|+.+......+.+
T Consensus 275 ~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~~~p~~~~~~~di~~ll~~A~~l~~~~~~~~~ 341 (345)
T 2qfz_A 275 DGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNLPTAHWDDEDISLLLAEAYRLKFAFADAPN 341 (345)
T ss_dssp TTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHHHC-----
T ss_pred CChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCCcCCchhHHHHHHHHHHHHHHHHHhhHh
Confidence 86 78999999999999999977899999999999987542 35899999999999876543333
No 5
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=100.00 E-value=2.1e-50 Score=378.47 Aligned_cols=267 Identities=20% Similarity=0.307 Sum_probs=234.9
Q ss_pred hhhHHHHHHhhcCCCCchHHHHHHHHhcChHhhhhhhhcccCCChhHHHHHHhcC-----CCCcccHHHHHhccCccCCC
Q psy3328 3 KKKKKKKEEAEIKHTSTFDFSIWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNK-----ILDPDIGETIRTDLPRTFPE 77 (337)
Q Consensus 3 ~~~~klk~~~~~GiP~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~y~~ll~~~-----~~~~~~~~~I~~Dv~Rt~~~ 77 (337)
.+.+++|+++++|||+.+|+.||+.++|+.+.....++....+.++.|.+++++. ..+.+..++|++||.||+|+
T Consensus 21 ~d~~~Lr~l~~~GIP~~lR~~vW~~LLg~~~~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~~~~~~~~~qI~~Dv~RT~p~ 100 (396)
T 1fkm_A 21 INQQDLRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTFSDQHSRDIPTWHQIEIDIPRTNPH 100 (396)
T ss_dssp CCHHHHHHHHTTCCCGGGHHHHHHHHTTCSCSBGGGHHHHHHHHHHHHHHHHHHTSSSSCSTHHHHHHHHHHHGGGSSTT
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCChhHHHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHhhhhCCC
Confidence 3568999999999999999999999999876554434333344578899998752 23456789999999999999
Q ss_pred CccccCChhhHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHhhcC---------------------C-------hhHHH
Q psy3328 78 NIFFRNSLEHQQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTK---------------------H-------EENTY 129 (337)
Q Consensus 78 ~~~f~~~~~~~~~L~~iL~~~~~~~~~i~Y~QG~~~i~~~ll~~~~---------------------~-------e~~af 129 (337)
+++|.. ..+++.|+|||.+|+.+||++||||||++|+++|+.++. + |++||
T Consensus 101 ~~~F~~-~~~~~~L~rIL~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF 179 (396)
T 1fkm_A 101 IPLYQF-KSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTF 179 (396)
T ss_dssp SGGGGS-HHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHH
T ss_pred cccccC-chHHHHHHHHHHHHHHHCCCCCcccCcHHHHHHHHHHHHHhhccccccccccccchhhccchhhhhhhHHHHH
Confidence 999987 567999999999999999999999999999999998641 2 89999
Q ss_pred HHHHHHHHHhhhhhccCCchhhhhhHHHHHHHHHhhChhhhhhhhhcCCCcchhhhHhHHHhcccCCChhhHHHHHHHHh
Q psy3328 130 WIFRSVINKYFSDYYTKTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETVLRIWDCLF 209 (337)
Q Consensus 130 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~W~~tlFs~~l~~~~~~~iwD~~l 209 (337)
|||+++|++ ++++|.++.+++...+..++.+++.++|+|++||.+.|+.+..|+.+||+|+|++++|++.++||||.+|
T Consensus 180 ~~f~~lm~~-~~~~f~~~~~~i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~LF~~~~p~~~vlrlWD~~l 258 (396)
T 1fkm_A 180 WCLTKLLEQ-ITDNYIHGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYL 258 (396)
T ss_dssp HHHHHHHGG-GGGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHHHHHTTTGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 999999998 5888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcC---------------------------------------------------C------------hHHHHHHHHHHHH
Q psy3328 210 VEG---------------------------------------------------P------------KILFRVSLTLIKL 226 (337)
Q Consensus 210 ~~g---------------------------------------------------~------------~~l~~~~lail~~ 226 (337)
++| + .+++++|+|+|..
T Consensus 259 ~eg~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~AlL~~ 338 (396)
T 1fkm_A 259 SETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVEDSGKMRQSSLNEFHVFVCAAFLIK 338 (396)
T ss_dssp HHHC------------------------------------------------------------CHHHHHHHHHHHHHHH
T ss_pred HCCCccccchhhhhcccccCCccccccccccccccccccccccccccccccccccccchhccccchHHHHHHHHHHHHHH
Confidence 998 2 5899999999999
Q ss_pred cHHHHhCCCCHHHHHHHHHcCCCCCc-ccccchhhhhHHHHHHHHHH
Q psy3328 227 HERALLECEDFTTLVECFKSMVRSPA-VLNCHSFMSGLNYIAALILL 272 (337)
Q Consensus 227 ~~~~il~~~~~~~i~~~l~~~~~~~~-~~d~~~~i~~a~~~~~~~~l 272 (337)
.|++|+++ |+++++.+|+++|.... ..|++.++++|+.+......
T Consensus 339 ~r~~Ll~~-df~~~l~~L~~~p~~~~~~~di~~ll~~A~~l~~~~~~ 384 (396)
T 1fkm_A 339 WSDQLMEM-DFQETITFLQNPPTKDWTETDIEMLLSEAFIWQSLYKD 384 (396)
T ss_dssp THHHHTTC-CHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhc-CHHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHHHhc
Confidence 99999985 99999999999987432 47899999999988876533
No 6
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=100.00 E-value=3.1e-47 Score=344.04 Aligned_cols=247 Identities=16% Similarity=0.230 Sum_probs=215.7
Q ss_pred hHHHHHHhhcC---CCCchHHHHHHHHhcChHhhhhhhhcccCCChhHHHHHHhcCCCCcccHHHHHhccCccCCCCccc
Q psy3328 5 KKKKKEEAEIK---HTSTFDFSIWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNKILDPDIGETIRTDLPRTFPENIFF 81 (337)
Q Consensus 5 ~~klk~~~~~G---iP~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~y~~ll~~~~~~~~~~~~I~~Dv~Rt~~~~~~f 81 (337)
.+++|.++..| +|+++|+.||+.++|+...... +.|..... .+++..++|++|+.||++.++.|
T Consensus 34 l~~Lr~l~~~~~g~~p~~lR~~vW~~Llg~~~~~~~----------~~~~~~~~---~~~~~~~qI~~Dv~RT~~~~~~~ 100 (292)
T 4hl4_A 34 VAALRRMAISEGGLLTDEIRRKVWPKLLNVNANDPP----------PISGKNLR---QMSKDYQQVLLDVRRSLRRFPPG 100 (292)
T ss_dssp HHHHHHHHHSTTCSCCHHHHHHHHHHHTTCCSCSCC----------SCCCTTHH---HHCTTHHHHHHHHHTTGGGSCTT
T ss_pred HHHHHHHHcCCCCCCChhHHHHHHHHHhCCCcccCC----------Cchhhhhc---ccchhHHHHHHhhhhhhhhccCC
Confidence 46788887753 8999999999999999876433 11211111 23468999999999999998877
Q ss_pred cCC---hhhHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccCCchhhhhhHHHH
Q psy3328 82 RNS---LEHQQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKYFSDYYTKTLTGVVRDIDVL 158 (337)
Q Consensus 82 ~~~---~~~~~~L~~iL~~~~~~~~~i~Y~QG~~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 158 (337)
... ...++.|.+||.+|+.+||++|||||||+||++|+.++ +|++|||||+++++..+++|+.++.+++...+..+
T Consensus 101 ~~~~~~~~~~~~L~~iL~ay~~~~p~vgY~QGm~~iaa~lLl~~-~e~~aF~~l~~l~~~~l~~~~~~~~~~~~~~~~~l 179 (292)
T 4hl4_A 101 MPEEQREGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLLVV-GERLATSLVEKLSTHHLRDFMDPTMDNTKHILNYL 179 (292)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHCTTCCCCTTHHHHHHHHHHHH-CHHHHHHHHHHHHHTTTTGGGCSSSCTTTGGGGGH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCeeccHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 542 23478899999999999999999999999999999988 89999999999999889999999999999999999
Q ss_pred HHHHHhhChhhhhhhhhcCCCcchhhhHhHHHhcccCCC-hhhHHHHHHHHhhcCChHHHHHHHHHHHHcHHHHhCC-CC
Q psy3328 159 SELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLP-VETVLRIWDCLFVEGPKILFRVSLTLIKLHERALLEC-ED 236 (337)
Q Consensus 159 ~~ll~~~~P~L~~hl~~~~i~~~~~~~~W~~tlFs~~l~-~~~~~~iwD~~l~~g~~~l~~~~lail~~~~~~il~~-~~ 236 (337)
+.+++.++|+|++||.+.++. ..|+.+||+|+|++++| ++.++|+||.++++|+.+++++++|++...+++|+++ .+
T Consensus 180 ~~ll~~~~P~L~~hL~~~~i~-~~~~~~W~ltlF~~~l~~~~~~~rlWD~~l~~g~~~~~~v~~ail~~~~~~Ll~~~~d 258 (292)
T 4hl4_A 180 MPIIDQVNPELHDFMQSAEVG-TIFALSWLITWFGHVLSDFRHVVRLYDFFLACHPLMPIYFAAVIVLYREQEVLDCDCD 258 (292)
T ss_dssp HHHHHHHCHHHHHHHC-CCCC-SGGGHHHHHTTTTTTSCCHHHHHHHHHHHHHSCTTHHHHHHHHHHHHTHHHHHTSCCS
T ss_pred HHHHHHHCHHHHHHHHHcCCC-cchHHHHHHHHHhhhcCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999995 69999999999999995 9999999999999999999999999999999999997 47
Q ss_pred HHHHHHHHHcCCCCCcccccchhhhhHHHHHHH
Q psy3328 237 FTTLVECFKSMVRSPAVLNCHSFMSGLNYIAAL 269 (337)
Q Consensus 237 ~~~i~~~l~~~~~~~~~~d~~~~i~~a~~~~~~ 269 (337)
++.+..+++++|.. .|++.+++.|..+...
T Consensus 259 ~~~l~~~l~~lp~~---~d~~~li~~A~~l~~~ 288 (292)
T 4hl4_A 259 MASVHHLLSQIPQD---LPYETLISRAGDLFVQ 288 (292)
T ss_dssp TTHHHHHHHSCCSS---CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCC---CCHHHHHHHHHHHHHH
Confidence 88899999999854 7999999999888754
No 7
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=100.00 E-value=3.8e-39 Score=288.76 Aligned_cols=237 Identities=14% Similarity=0.220 Sum_probs=197.4
Q ss_pred hhHHHHHHhhcC-CCCchHHHHHHHHhcChHhhhhhhhcccCCChhHHHHHHhcCCCCcccHHHHHhccCccCCCCcccc
Q psy3328 4 KKKKKKEEAEIK-HTSTFDFSIWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNKILDPDIGETIRTDLPRTFPENIFFR 82 (337)
Q Consensus 4 ~~~klk~~~~~G-iP~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~y~~ll~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~ 82 (337)
+.+|+|+.+++| ||+.+|+.||+.|+|+.+...+.++....+++..|.++++. .+.. +++.+..|-.
T Consensus 39 d~~~L~~~~~~g~IP~~~R~~vWklLlGylP~~~~~~~~~l~~kr~eY~~l~~~----~~~~----r~I~~~tP~~---- 106 (294)
T 3qwl_A 39 DTEKLCTFSQRFPLPSMYRALVWKVLLGILPPHHESHAKVMMYRKEQYLDVLHA----LKVV----RFVSDATPQA---- 106 (294)
T ss_dssp CHHHHHHHHHHSCCCHHHHHHHHHHHTTSSCSBGGGHHHHHHHHHHHHHHHHHH----HHHT----TSCCTTSCHH----
T ss_pred CHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHHHh----hhhh----hhhhccCchH----
Confidence 578999999999 99999999999999998888777777777788999999887 1222 2222222211
Q ss_pred CChhhHHHHHHHHHHHHhh----------cCCCCcccchHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccCCchhhh
Q psy3328 83 NSLEHQQQLSRILKVFALD----------EKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKYFSDYYTKTLTGVV 152 (337)
Q Consensus 83 ~~~~~~~~L~~iL~~~~~~----------~~~i~Y~QG~~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~~~~~~~~~~~ 152 (337)
...+..|... +++ .++|||..|+++++.++.+|++|||||+++|++ ++++|.++.+|++
T Consensus 107 ---------~vfl~~~~~~~~~l~~~~~~~~~-~~~~~~~~Iaa~ll~l~~~E~dAFW~f~~Lm~~-l~~~f~~~~~gl~ 175 (294)
T 3qwl_A 107 ---------EVYLRMYQLESGKLPRSPSFPLE-PDDEVFLAIAKAMEEMVEDSVDCYWITRRFVNQ-LNTKYRDSLPQLP 175 (294)
T ss_dssp ---------HHHHHHHHHHHTCCCSSTTSCCC-HHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHH-HHTTTTTTGGGHH
T ss_pred ---------HHHHHHHHcccccccccccCCcc-cchhhHHHHHHHHHHHhCCHHHHHHHHHHHHHH-HHHhhCCChhHHH
Confidence 1122222211 222 246899999999999888999999999999999 6789999999986
Q ss_pred hhHHHHHHHHHhhChhhhhhhhhcCCCcchhhhHhHHHhcccCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcHHHHh
Q psy3328 153 RDIDVLSELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETVLRIWDCLFVEGPKILFRVSLTLIKLHERALL 232 (337)
Q Consensus 153 ~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~W~~tlFs~~l~~~~~~~iwD~~l~~g~~~l~~~~lail~~~~~~il 232 (337)
. .++.+++.++|+|++||++.|+.+..++.+||+++|++++|++.++|+||.++++|..+++++|+|++..++++|+
T Consensus 176 ~---~l~~LL~~~dP~L~~HL~~~~i~~~~~~~rWfl~lF~~~~p~~~vlRlWD~~~~~~~~~l~~valAiL~~~r~~Ll 252 (294)
T 3qwl_A 176 K---AFEQYLNLEDGRLLTHLRMCSAAPKLPYDLWFKRCFAGCLPESSLQRVWDKVVSGSCKILVFVAVEILLTFKIKVM 252 (294)
T ss_dssp H---HHHHHHHHHCHHHHHHHHHTTCGGGSCHHHHHTSTTTTTSCHHHHHHHHHHHHTTCSTHHHHHHHHHHHHTHHHHH
T ss_pred H---HHHHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHhccCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHh
Confidence 5 4589999999999999999999988777899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHcCCCCCcccccchhhhhHHHHHHHH
Q psy3328 233 ECEDFTTLVECFKSMVRSPAVLNCHSFMSGLNYIAALI 270 (337)
Q Consensus 233 ~~~~~~~i~~~l~~~~~~~~~~d~~~~i~~a~~~~~~~ 270 (337)
++++.++++++|+++|. .|++.++++|+.+....
T Consensus 253 ~~~~~~~il~~Lq~lp~----~di~~ll~~A~~l~~~~ 286 (294)
T 3qwl_A 253 ALNSAEKITKFLENIPQ----DSSDAIVSKAIDLWHKH 286 (294)
T ss_dssp HCCSHHHHHHHHTTCCS----TTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCc----ccHHHHHHHHHHHHHHc
Confidence 98777999999999986 57899999999887654
No 8
>1dxs_A P53-like transcription factor; P73 SAM-like domain, gene regulation, P53 P63 homologue, sterIle alpha motif, tumour supressor; 2.54A {Homo sapiens} SCOP: a.60.1.2 PDB: 1cok_A
Probab=52.32 E-value=11 Score=25.71 Aligned_cols=26 Identities=12% Similarity=0.337 Sum_probs=19.2
Q ss_pred HHHhhcCCCCchHHHHHHHHhcChHh
Q psy3328 9 KEEAEIKHTSTFDFSIWMIISEADTL 34 (337)
Q Consensus 9 k~~~~~GiP~~~R~~vW~~llg~~~~ 34 (337)
..+..-.||..+|..+|+-+......
T Consensus 42 edL~~mkIpe~~R~kIWk~l~e~~q~ 67 (80)
T 1dxs_A 42 EDLGALKIPEQYRMTIWRGLQDLKQG 67 (80)
T ss_dssp HHHHHTTCCTTTHHHHHHHHHHC---
T ss_pred HHHHhCCCCHHHHHHHHhhHHHhccc
Confidence 45566789999999999999765543
No 9
>2jvd_A UPF0291 protein YNZC; solution structure, construct optimization, cytoplasm, structural genomics, unknown function, PSI-2; NMR {Bacillus subtilis}
Probab=44.84 E-value=32 Score=21.57 Aligned_cols=41 Identities=7% Similarity=0.003 Sum_probs=31.8
Q ss_pred HhhhhhhhhchhhhhhhhhHHHHHHHHHHHHhhcccccchh
Q psy3328 288 INKYFSDYYTKTLTGVVRDIDVLSELVNDYYTKTLTGVVRD 328 (337)
Q Consensus 288 i~~~~~~~~~~~~~~l~~d~~~l~~l~~~~~~~~~~~~~~~ 328 (337)
+..++.-+-++...||..+-+.=|+-+++.|+++++|.++.
T Consensus 7 i~RINeLakK~K~~gLT~eEk~EQ~~LR~eYl~~fR~~~r~ 47 (54)
T 2jvd_A 7 IARINELAAKAKAGVITEEEKAEQQKLRQEYLKGFRSSMKL 47 (54)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCCCTTTT
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444556677899999999999999999999998875
No 10
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=37.49 E-value=33 Score=29.60 Aligned_cols=43 Identities=9% Similarity=0.168 Sum_probs=38.6
Q ss_pred ccchhHHHHHHHHhhhhhhhhchhhhhhhhhHHHHHHHHHHHH
Q psy3328 276 HEENTYWIFRSVINKYFSDYYTKTLTGVVRDIDVLSELVNDYY 318 (337)
Q Consensus 276 ~~~~~y~~~~~~i~~~~~~~~~~~~~~l~~d~~~l~~l~~~~~ 318 (337)
.++..||.+..+.++..++||..++.+++.+..++.++++...
T Consensus 145 ~e~~aF~~l~~l~~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~ 187 (292)
T 4hl4_A 145 GERLATSLVEKLSTHHLRDFMDPTMDNTKHILNYLMPIIDQVN 187 (292)
T ss_dssp CHHHHHHHHHHHHHTTTTGGGCSSSCTTTGGGGGHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHC
Confidence 5678899999999998999999999999999999999998765
No 11
>1rdt_E LXXLL motif coactivator, peroxisome proliferator activated receptor gamma; hormone, polymorphism, hormone/growth factor complex; HET: L79 570; 2.40A {Homo sapiens}
Probab=34.12 E-value=24 Score=18.10 Aligned_cols=18 Identities=22% Similarity=-0.023 Sum_probs=14.9
Q ss_pred hhhHHHHHHhhcCCCCch
Q psy3328 3 KKKKKKKEEAEIKHTSTF 20 (337)
Q Consensus 3 ~~~~klk~~~~~GiP~~~ 20 (337)
-+++++-++.|.|-|..+
T Consensus 8 akhkqLSeLLR~g~~~~l 25 (26)
T 1rdt_E 8 SKHKQLSELLRGGSGSXX 25 (26)
T ss_pred HHHHHHHHHHcCCCCcCC
Confidence 378999999999988754
No 12
>3bhp_A UPF0291 protein YNZC; NESG, SR384, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.01A {Bacillus subtilis}
Probab=31.78 E-value=35 Score=21.90 Aligned_cols=41 Identities=7% Similarity=0.054 Sum_probs=29.7
Q ss_pred HhhhhhhhhchhhhhhhhhHHHHHHHHHHHHhhcccccchh
Q psy3328 288 INKYFSDYYTKTLTGVVRDIDVLSELVNDYYTKTLTGVVRD 328 (337)
Q Consensus 288 i~~~~~~~~~~~~~~l~~d~~~l~~l~~~~~~~~~~~~~~~ 328 (337)
+..++.-+-++...||..+-+.=|+-+++.|+++++|.++.
T Consensus 7 i~RINeLakK~K~~gLT~eEk~EQ~~LR~eYl~~fR~~~r~ 47 (60)
T 3bhp_A 7 IARINELAAKAKAGVITEEEKAEQQKLRQEYLKGFRSSMKN 47 (60)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444556677898888888889999998888777664
No 13
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=23.85 E-value=1.2e+02 Score=26.12 Aligned_cols=43 Identities=16% Similarity=0.399 Sum_probs=36.4
Q ss_pred ccchhHHHHHHHHhhh-hhhhhchhhhhhhhhHHHHHHHHHHHH
Q psy3328 276 HEENTYWIFRSVINKY-FSDYYTKTLTGVVRDIDVLSELVNDYY 318 (337)
Q Consensus 276 ~~~~~y~~~~~~i~~~-~~~~~~~~~~~l~~d~~~l~~l~~~~~ 318 (337)
.++..||.+..+.+++ .+++|..++.++......+..+++...
T Consensus 130 ~e~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~ 173 (310)
T 3hzj_A 130 PEEQAFCVLVKIMYDYGLRDLYRNNFEDLHCKFYQLERLMQEQL 173 (310)
T ss_dssp CHHHHHHHHHHHHHTSCGGGGTHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHhC
Confidence 5567899999998775 689999999999999999999988765
No 14
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=21.93 E-value=81 Score=27.53 Aligned_cols=43 Identities=19% Similarity=0.329 Sum_probs=35.7
Q ss_pred ccchhHHHHHHHHhhh-hhhhhchhhhhhhhhHHHHHHHHHHHH
Q psy3328 276 HEENTYWIFRSVINKY-FSDYYTKTLTGVVRDIDVLSELVNDYY 318 (337)
Q Consensus 276 ~~~~~y~~~~~~i~~~-~~~~~~~~~~~l~~d~~~l~~l~~~~~ 318 (337)
.++..||.+..+.+.+ .+++|.+++.+++.+...+..|++...
T Consensus 164 ~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~ 207 (331)
T 3qye_A 164 SEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYH 207 (331)
T ss_dssp CHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHH
Confidence 3566799999988876 678999999999999999999888654
No 15
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=21.02 E-value=79 Score=27.85 Aligned_cols=43 Identities=28% Similarity=0.531 Sum_probs=36.7
Q ss_pred hccchhHHHHHHHHhhhhhhhhchhhhhhhhhHHHHHHHHHHHH
Q psy3328 275 KHEENTYWIFRSVINKYFSDYYTKTLTGVVRDIDVLSELVNDYY 318 (337)
Q Consensus 275 k~~~~~y~~~~~~i~~~~~~~~~~~~~~l~~d~~~l~~l~~~~~ 318 (337)
..+...||.+..+++++ +++|..++.|++.+..++.+|++...
T Consensus 186 ~~E~daF~~f~~lm~~~-~~~y~~~~~~i~~~~~~l~~ll~~~d 228 (345)
T 2qfz_A 186 NIEADTYWCMSKLLDGI-QDNYTFAQPGIQMKVKMLEELVSRID 228 (345)
T ss_dssp HHHHHHHHHHHHHHHTS-GGGSSTTCHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHcc-ccccccCcHHHHHHHHHHHHHHHHHH
Confidence 34567899999999986 78898889999999999999998764
Done!