RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3328
(337 letters)
>gnl|CDD|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain. Identification of a
TBC domain in GYP6_YEAST and GYP7_YEAST, which are
GTPase activator proteins of yeast Ypt6 and Ypt7,
implies that these domains are GTPase activator proteins
of Rab-like small GTPases.
Length = 206
Score = 189 bits (483), Expect = 2e-59
Identities = 79/209 (37%), Positives = 118/209 (56%), Gaps = 9/209 (4%)
Query: 24 IWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNKILDPDIGETIRTDLPRTFPENIFFRN 83
+W ++ + K + K+ D E I D+PRTFP + FF+N
Sbjct: 7 VWKLLLGNLSESKQRDS--------VSQYSKLLKLEDSPDEEQIEKDVPRTFPHHFFFKN 58
Query: 84 SLEHQQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKYFSDY 143
E QQQL RILK +++ ++GYCQG+N+IAA +LLV EE +W F S++ D+
Sbjct: 59 G-EGQQQLRRILKAYSIYNPDVGYCQGMNFIAAPLLLVVLDEEEAFWCFVSLLEYLLRDF 117
Query: 144 YTKTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETVLR 203
+ + G+ RD+ V EL+K P LY H+ K+G+ + A+KWF+ +FA LP+ETVLR
Sbjct: 118 FLPSFPGLQRDLYVFEELLKKHDPELYKHLQKLGLDPSLFASKWFLTLFARELPLETVLR 177
Query: 204 IWDCLFVEGPKILFRVSLTLIKLHERALL 232
+WD G LFRV+L ++K + LL
Sbjct: 178 LWDLFLEGGKFFLFRVALAILKRFRKELL 206
Score = 54.7 bits (132), Expect = 6e-09
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 262 GLNYIAALILLVTKHEENTYWIFRSVINKYFSDYYTKTLTGVVRDIDVLSELVNDYYTK 320
G+N+IAA +LLV EE +W F S++ D++ + G+ RD+ V EL+ + +
Sbjct: 84 GMNFIAAPLLLVVLDEEEAFWCFVSLLEYLLRDFFLPSFPGLQRDLYVFEELLKKHDPE 142
>gnl|CDD|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p. Probable
Rab-GAPs. Widespread domain present in Gyp6 and Gyp7,
thereby giving rise to the notion that it performs a
GTP-activator activity on Rab-like GTPases.
Length = 216
Score = 168 bits (428), Expect = 3e-51
Identities = 76/185 (41%), Positives = 110/185 (59%), Gaps = 1/185 (0%)
Query: 49 YYAFMLNNKILDPDIGETIRTDLPRTFPENIFFRNSL-EHQQQLSRILKVFALDEKNIGY 107
Y + D I I DL RTFPE+ FF++ Q+ L R+LK +AL +GY
Sbjct: 32 YSRLLKETAPDDKSIVHQIEKDLRRTFPEHSFFQDKEGPGQESLRRVLKAYALYNPEVGY 91
Query: 108 CQGLNYIAALILLVTKHEENTYWIFRSVINKYFSDYYTKTLTGVVRDIDVLSELVKIKMP 167
CQG+N++AA +LLV + EE+ +W ++ +Y ++Y ++G+ D+ L LVK P
Sbjct: 92 CQGMNFLAAPLLLVMEDEEDAFWCLVKLMERYGPNFYLPDMSGLQLDLLQLDRLVKEYDP 151
Query: 168 HLYDHISKVGVPWPVIATKWFICMFADVLPVETVLRIWDCLFVEGPKILFRVSLTLIKLH 227
LY H+ +G+ + A +WF+ +FA LP+E VLRIWD LF EG LFRV+L L+KLH
Sbjct: 152 DLYKHLKDLGITPSLYALRWFLTLFARELPLEIVLRIWDVLFAEGSDFLFRVALALLKLH 211
Query: 228 ERALL 232
LL
Sbjct: 212 RDVLL 216
Score = 52.3 bits (126), Expect = 6e-08
Identities = 18/59 (30%), Positives = 35/59 (59%)
Query: 262 GLNYIAALILLVTKHEENTYWIFRSVINKYFSDYYTKTLTGVVRDIDVLSELVNDYYTK 320
G+N++AA +LLV + EE+ +W ++ +Y ++Y ++G+ D+ L LV +Y
Sbjct: 94 GMNFLAAPLLLVMEDEEDAFWCLVKLMERYGPNFYLPDMSGLQLDLLQLDRLVKEYDPD 152
>gnl|CDD|227535 COG5210, COG5210, GTPase-activating protein [General function
prediction only].
Length = 496
Score = 154 bits (390), Expect = 8e-43
Identities = 68/178 (38%), Positives = 105/178 (58%), Gaps = 2/178 (1%)
Query: 51 AFMLNNKILDPDIGETIRTDLPRTFPENIFFRN-SLEHQQQLSRILKVFALDEKNIGYCQ 109
KI +I I DL RTFP+N F+ + L R+LK ++L +GY Q
Sbjct: 244 NLHREAKIPTQEIISQIEKDLSRTFPDNSLFQTEISIRAENLRRVLKAYSLYNPEVGYVQ 303
Query: 110 GLNYIAALILLVTKHEENTYWIFRSVI-NKYFSDYYTKTLTGVVRDIDVLSELVKIKMPH 168
G+N++AA +LLV + EE +W ++ N Y+ K L+G+ RD+ VL +LV+ P
Sbjct: 304 GMNFLAAPLLLVLESEEQAFWCLVKLLKNYGLPGYFLKNLSGLHRDLKVLDDLVEELDPE 363
Query: 169 LYDHISKVGVPWPVIATKWFICMFADVLPVETVLRIWDCLFVEGPKILFRVSLTLIKL 226
LY+H+ + GV + A +WF+ +F P+E LRIWDCLF+EG +LF+++L ++KL
Sbjct: 364 LYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSMLFQLALAILKL 421
Score = 42.1 bits (99), Expect = 3e-04
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 262 GLNYIAALILLVTKHEENTYWIFRSVI-NKYFSDYYTKTLTGVVRDIDVLSELVNDYYTK 320
G+N++AA +LLV + EE +W ++ N Y+ K L+G+ RD+ VL +LV + +
Sbjct: 304 GMNFLAAPLLLVLESEEQAFWCLVKLLKNYGLPGYFLKNLSGLHRDLKVLDDLVEELDPE 363
>gnl|CDD|203029 pfam04495, GRASP55_65, GRASP55/65 PDZ-like domain. GRASP55 (Golgi
re-assembly stacking protein of 55 kDa) and GRASP65 (a
65 kDa) protein are highly homologous. GRASP55 is a
component of the Golgi stacking machinery. GRASP65, an
N-ethylmaleimide- sensitive membrane protein required
for the stacking of Golgi cisternae in a cell-free
system. This region appears to be related to the PDZ
domain.
Length = 136
Score = 28.8 bits (65), Expect = 2.2
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 292 FSDYYTKTLTGVVRDIDVLSELVNDYYTKTLTGVVRDID 330
+SDY T +G++R D L ELV + + L V + +
Sbjct: 62 YSDYIIGTDSGLLRGEDDLFELVESHEGRPLKLYVYNSE 100
>gnl|CDD|227894 COG5607, COG5607, Uncharacterized conserved protein [Function
unknown].
Length = 283
Score = 27.9 bits (62), Expect = 8.4
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 299 TLTGVVRDIDVLSELVNDYYTKTLTGVVRDIDVLSELVK 337
G VRD+DVL E + Y D+D+ +L K
Sbjct: 74 RALGPVRDLDVLLEALETYLPHLPPAEQHDLDLFDKLAK 112
>gnl|CDD|220046 pfam08863, YolD, YolD-like protein. Members of this family are
functionally uncharacterized. However it has been
predicted that thes proteins are functionally equivalent
to the UmuD subunit of polymerase V from gram-negative
bacteria.
Length = 92
Score = 26.0 bits (58), Expect = 9.6
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 139 YFSDYYTKTLTGVVRDIDVLSELVKIKMPH 168
Y+ D Y +T G + ID L++ +KI
Sbjct: 49 YYEDGYIETYYGTIHKIDPLNKTLKITDAF 78
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.139 0.423
Gapped
Lambda K H
0.267 0.0731 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,455,608
Number of extensions: 1716147
Number of successful extensions: 1877
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1870
Number of HSP's successfully gapped: 22
Length of query: 337
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 240
Effective length of database: 6,635,264
Effective search space: 1592463360
Effective search space used: 1592463360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (26.5 bits)