RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3328
(337 letters)
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase
activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Length = 331
Score = 240 bits (613), Expect = 1e-77
Identities = 63/239 (26%), Positives = 119/239 (49%), Gaps = 7/239 (2%)
Query: 24 IWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNKILDPDIGETIRTDLPRTFPENIFFRN 83
IW ++E LK ++ Y +L I DL RTFP + +F
Sbjct: 68 IWKFLAEQFHLKH-QFPSKQQPKDVPYKELLKQ---LTSQQHAILIDLGRTFPTHPYFSA 123
Query: 84 SLEH-QQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKY-FS 141
L Q L ILK ++L ++ +GYCQGL+++A ++LL EE + + + ++
Sbjct: 124 QLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHMS-EEEAFKMLKFLMFDMGLR 182
Query: 142 DYYTKTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETV 201
Y + + + LS L+ LY+H+ + + + A WF+ MFA P+ V
Sbjct: 183 KQYRPDMIILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFV 242
Query: 202 LRIWDCLFVEGPKILFRVSLTLIKLHERALLECEDFTTLVECFKSMVRSPAVLNCHSFM 260
R++D +F++G +++F+V+L+L+ H+ +L+ E+ T+V+ KS + + ++ +
Sbjct: 243 ARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLPNLGLVQMEKTI 301
Score = 52.9 bits (127), Expect = 5e-08
Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 262 GLNYIAALILLVTKHEENTYWIFRSVINKY-FSDYYTKTLTGVVRDIDVLSELVNDY 317
GL+++A ++LL EE + + + ++ Y + + + LS L++DY
Sbjct: 151 GLSFVAGILLLHMS-EEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDY 206
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics
consortium, SGC, alternative splicing, GTPase
activation, phosphoprotein; 2.30A {Homo sapiens}
Length = 310
Score = 224 bits (573), Expect = 6e-72
Identities = 60/242 (24%), Positives = 114/242 (47%), Gaps = 18/242 (7%)
Query: 24 IWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNKILDPDIGETIRTDLPRTFPENIFFRN 83
+W +++ + + Y ++ D I D+ RTFP + +F++
Sbjct: 42 VWQLLAGCHDNQAML---------DRYRILITK---DSAQESVITRDIHRTFPAHDYFKD 89
Query: 84 SLEH-QQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKY-FS 141
+ Q+ L +I K +++ +++IGYCQG +++AA++LL EE + + ++ Y
Sbjct: 90 TGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHMP-EEQAFCVLVKIMYDYGLR 148
Query: 142 DYYTKTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETV 201
D Y + L L++ ++P L+ H S + + + A++WF+ +F P+ V
Sbjct: 149 DLYRNNFEDLHCKFYQLERLMQEQLPDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMV 208
Query: 202 LRIWDCLFVEGPKILFRVSLTLIKLHERALLECEDFTTLVECFKSMVRS--PAVLNCHSF 259
I D L EG I+F V+L L+K + LL+ DF ++ F+ + A N
Sbjct: 209 FHIIDLLLCEGLNIIFHVALALLKTSKEDLLQA-DFEGALKFFRVQLPKRYRAEENARRL 267
Query: 260 MS 261
M
Sbjct: 268 ME 269
Score = 53.6 bits (129), Expect = 3e-08
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 262 GLNYIAALILLVTKHEENTYWIFRSVINKY-FSDYYTKTLTGVVRDIDVLSELVNDY 317
G +++AA++LL EE + + ++ Y D Y + L L+ +
Sbjct: 117 GQSFLAAVLLLHMP-EEQAFCVLVKIMYDYGLRDLYRNNFEDLHCKFYQLERLMQEQ 172
>2qq8_A TBC1 domain family member 14; structural genomics consortium,
RAB-GAP, SGC, GTPase activation, hydrolase activator;
2.00A {Homo sapiens}
Length = 334
Score = 216 bits (553), Expect = 1e-68
Identities = 46/238 (19%), Positives = 93/238 (39%), Gaps = 16/238 (6%)
Query: 24 IWMIISEADTLKKVTHQTRHYGTGGYYAFMLNNKILDPDIG-------------ETIRTD 70
+W + + L+ + + E I+ D
Sbjct: 57 VWSLAIGNELNITHELFDICLARAKERWRSLSTGGSEVENEDAGFSAADREASLELIKLD 116
Query: 71 LPRTFPENIFFRNSLEHQQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYW 130
+ RTFP F+ + L IL + ++GY QG+++IAA+++L + +
Sbjct: 117 ISRTFPNLCIFQQGGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLD-TADAFI 175
Query: 131 IFRSVINKY-FSDYYTKTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVPWPVIATKWFI 189
F +++NK ++ ++ + +P L+ H K + + W
Sbjct: 176 AFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLIDWIF 235
Query: 190 CMFADVLPVETVLRIWDCLFVEGPKILFRVSLTLIKLHERALLECEDFTTLVECFKSM 247
+++ LP++ RIWD +G + LFR +L ++KL E L + DF + + +
Sbjct: 236 TLYSKSLPLDLACRIWDVFCRDGEEFLFRTALGILKLFEDILTKM-DFIHMAQFLTRL 292
Score = 50.6 bits (121), Expect = 3e-07
Identities = 8/57 (14%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 262 GLNYIAALILLVTKHEENTYWIFRSVINKY-FSDYYTKTLTGVVRDIDVLSELVNDY 317
G+++IAA+++L + + F +++NK ++ ++ +
Sbjct: 156 GMSFIAAVLILNLD-TADAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEEN 211
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator,
structural genomics, structural genomics consortium,
SGC, hydrolase activator; 2.10A {Homo sapiens} PDB:
3dzx_A
Length = 345
Score = 167 bits (424), Expect = 2e-49
Identities = 46/234 (19%), Positives = 87/234 (37%), Gaps = 30/234 (12%)
Query: 41 TRHYGTGGYYAFMLNNKILDPDIGETIRTDLPRTFPENIFFRNSLEHQQQLSRILKVFAL 100
+ Y + + N + D I D+PR PE + + + + RIL ++A+
Sbjct: 82 QKEYFAFIEHYYDSRNDEVHQDTYRQIHIDIPRMSPEALILQP--KVTEIFERILFIWAI 139
Query: 101 DEKNIGYCQGLNYIAALILLV------------------------TKHEENTYWIFRSVI 136
GY QG+N + +V E +TYW ++
Sbjct: 140 RHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWCMSKLL 199
Query: 137 NKYFSDYYTKTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVL 196
+ D YT G+ + +L ELV ++ H+ + V + A +W + +
Sbjct: 200 DGIQ-DNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREV 258
Query: 197 PVETVLRIWDCLFVEG---PKILFRVSLTLIKLHERALLECEDFTTLVECFKSM 247
P+ +R+WD E V + + +LE +DF L+ +++
Sbjct: 259 PLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNL 312
Score = 29.2 bits (65), Expect = 1.8
Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 7/80 (8%)
Query: 262 GLNYIAALILLVTKHEENTYWIFRSVINKYFSDYYTKTLTGVVRDI----DVLSELVNDY 317
G+N + +V E Y V S + L + D L + + D
Sbjct: 149 GINDLVTPFFVVFICE---YIEAEEVDTVDVSGVPAEVLCNIEADTYWCMSKLLDGIQDN 205
Query: 318 YTKTLTGVVRDIDVLSELVK 337
YT G+ + +L ELV
Sbjct: 206 YTFAQPGIQMKVKMLEELVS 225
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular
trafficking, endocytosis, hydrolase, GTPase activation;
1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1
PDB: 2g77_A*
Length = 396
Score = 162 bits (410), Expect = 8e-47
Identities = 48/247 (19%), Positives = 84/247 (34%), Gaps = 31/247 (12%)
Query: 52 FMLNNKILDPDIGETIRTDLPRTFPENIFFRNSLEHQQQLSRILKVFALDEKNIGYCQGL 111
+ D I D+PRT P ++ Q L RIL ++A+ GY QG+
Sbjct: 75 TFSDQHSRDIPTWHQIEIDIPRTNPHIPLYQFK-SVQNSLQRILYLWAIRHPASGYVQGI 133
Query: 112 NYIAALILLV----------------------------TKHEENTYWIFRSVINKYFSDY 143
N + T E +T+W ++ + D
Sbjct: 134 NDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQIT-DN 192
Query: 144 YTKTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETVLR 203
Y G++R + LS+LVK LY+H V + A +W C+ + TV+R
Sbjct: 193 YIHGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIR 252
Query: 204 IWDCLFVEGPK-ILFRVSLTLIKLHERALLECEDFTTLVECFKSMVRSPAVLNCHSFMSG 262
+WD E + + S++ + + V K L+ + +
Sbjct: 253 MWDTYLSETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNA 312
Query: 263 LNYIAAL 269
+ +
Sbjct: 313 VEDSGKM 319
Score = 27.7 bits (61), Expect = 6.4
Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 11/84 (13%)
Query: 262 GLNYIAALILLVTKHEENTYWIFRSVINKYFSDYYTKTLTGVVRDIDV-----LSELVN- 315
G+N + E Y + + D T + + D++ L++L+
Sbjct: 132 GINDLVTPFFETFLTE---YLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQ 188
Query: 316 --DYYTKTLTGVVRDIDVLSELVK 337
D Y G++R + LS+LVK
Sbjct: 189 ITDNYIHGQPGILRQVKNLSQLVK 212
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural
genomics consortium, TBC D SGC, hydrolase activator;
1.90A {Homo sapiens}
Length = 294
Score = 137 bits (345), Expect = 3e-38
Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 9/183 (4%)
Query: 65 ETIRTDLPRTFPENIFFRNSLEHQQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKH 124
+ +R T ++ R +L R + IA + + +
Sbjct: 94 KVVRFVSDATPQAEVYLRMYQLESGKLPRSPSFPLE-----PDDEVFLAIAKAMEEMVED 148
Query: 125 EENTYWIFRSVINKYFSDYYTKTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVPWPVIA 184
+ YWI R +N+ + Y + + + + ++ L H+ +
Sbjct: 149 SVDCYWITRRFVNQLNTKYRD----SLPQLPKAFEQYLNLEDGRLLTHLRMCSAAPKLPY 204
Query: 185 TKWFICMFADVLPVETVLRIWDCLFVEGPKILFRVSLTLIKLHERALLECEDFTTLVECF 244
WF FA LP ++ R+WD + KIL V++ ++ + ++ + +
Sbjct: 205 DLWFKRCFAGCLPESSLQRVWDKVVSGSCKILVFVAVEILLTFKIKVMALNSAEKITKFL 264
Query: 245 KSM 247
+++
Sbjct: 265 ENI 267
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.9 bits (139), Expect = 2e-09
Identities = 53/338 (15%), Positives = 100/338 (29%), Gaps = 84/338 (24%)
Query: 20 FDFSI-WMIISEADTLKKVTHQTRHYGTGGYYAFMLNNKILDPDIGETIRTDLPRTFPEN 78
DF I W+ + ++ + V ML + D T R+D
Sbjct: 180 MDFKIFWLNLKNCNSPETVLE-------------MLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 79 I-----FFRNSLEHQQ-----------QLSRILKVFALDEKNIGYCQGL------NYIAA 116
I R L+ + Q ++ F N+ C+ L
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-----NLS-CKILLTTRFKQVTDF 280
Query: 117 LILLVTKH-----------EENTYWIFRSVINKYFSDYYTKTLTGVVRDIDVLSELVKIK 165
L T H + + ++ D + LT R + +++E ++
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR-D 339
Query: 166 MPHLYDHISKVGVPWPVIATKWFICMFADVL-PVETVLRIWDC-LFVEGPKILFRVSLTL 223
+D+ V + I +VL P E +F I + L+L
Sbjct: 340 GLATWDNWKHVNC-DKLTTI---IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL-LSL 394
Query: 224 I--KLHERALLECEDFTTLVECFKSMVRSPAVLNCHSFMSGLNYIAALILLVTKHEENTY 281
I + + + + + K +++ I ++ L + EN Y
Sbjct: 395 IWFDVIKS---DVMVV--VNKLHKY-----SLVEKQPK-ESTISIPSIYLELKVKLENEY 443
Query: 282 WIFRSVINKY-FSDYYTKTLTGVVRDIDVLSELVNDYY 318
+ RS+++ Y + D D L D Y
Sbjct: 444 ALHRSIVDHYNIPKTF---------DSDDLIPPYLDQY 472
Score = 34.1 bits (77), Expect = 0.085
Identities = 31/210 (14%), Positives = 68/210 (32%), Gaps = 28/210 (13%)
Query: 57 KILDPDIGETIRTDLPRTFPEN---------IFFRNSLEH-QQQLSRILKVFALDEKNIG 106
+L+P + L FP + + + + ++ + L ++L EK
Sbjct: 364 NVLEPAEYRKMFDRLS-VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ-- 420
Query: 107 YCQGLNYIAALILLVTKHEENTYWIFRSVINKY--FSDYYTKTLTGVVRDIDVLS----E 160
+ I ++ L + EN Y + RS+++ Y + + L D S
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480
Query: 161 LVKIKMPHLYDHISKVGV--PW---PVIATKWFICMFADVLPVETVLRIWDCLFVEGPKI 215
L I+ P V + + + +L L+ + +
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK 540
Query: 216 LFRVSLTLIKL---HERALLECEDFTTLVE 242
R+ ++ E L+ + +T L+
Sbjct: 541 YERLVNAILDFLPKIEENLICSK-YTDLLR 569
Score = 28.7 bits (63), Expect = 3.4
Identities = 31/232 (13%), Positives = 68/232 (29%), Gaps = 46/232 (19%)
Query: 124 HEENTYWIFRSVINKY-FSDYYTKTLTGVVRDID---VLSELVKIKMPHLYDHISKVGVP 179
H + + F + ++Y + D + V + D V I DHI +
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI--IMSK 58
Query: 180 WPVIATKWFICMFADVLPVETVLRIWDCLFVEGPKILFRVSLTLIKLHERALLECEDFTT 239
V LR++ L + +++ + +++ ++
Sbjct: 59 ----------------DAVSGTLRLFWTLLSKQEEMVQKFVEEVLR---------INYKF 93
Query: 240 LVECFKSMVRSPAVLNCHSFMSGLNYIAALILLVTKHE---ENTYWIFRSVINKYFSDYY 296
L+ K+ R P+ + ++ + + + K+ Y R + +
Sbjct: 94 LMSPIKTEQRQPS-MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152
Query: 297 T---------KT-LTG-VVRDIDVLSELVNDYYTKTLTGVVRDIDVLSELVK 337
KT + V V ++ + L VL L K
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.0 bits (111), Expect = 7e-06
Identities = 57/359 (15%), Positives = 112/359 (31%), Gaps = 136/359 (37%)
Query: 1 M----YKKKKKKK---EEAEIKHTSTFDFSIWMIISEADTLKKVTHQTRHYGTGGYYAFM 53
M YK K + A+ T+ FSI I+ + H+G
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTI-----HFGGEK----- 1680
Query: 54 LNNKILDPDIGETIRTDLPRTFPEN---IFFRNSLEHQQQLSRILKVFALDEKNIGYC-- 108
G+ IR EN + F ++ + + +I K ++E + Y
Sbjct: 1681 ----------GKRIR--------ENYSAMIFETIVDGKLKTEKIFK--EINEHSTSYTFR 1720
Query: 109 --QGLNYIAALILLVTKHEENT--------YWIFRSVINKYFSDYYTKTLTGVVRDIDV- 157
+GL L T + T F + +K G++
Sbjct: 1721 SEKGL-------LSAT---QFTQPALTLMEKAAFEDLKSK-----------GLIPADATF 1759
Query: 158 ----LSELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETVLRIWDCLFVEGP 213
L E Y + A + ADV+ +E+++ +
Sbjct: 1760 AGHSLGE---------Y---A---------A----LASLADVMSIESLVEV--------- 1785
Query: 214 KILFRVSLTLIKLHERALLECEDFTTLVECFKSMVRSPAVLNCHSFMSGLNYIAALILLV 273
+ R + + E +S A+ N + + AL +V
Sbjct: 1786 ------------VFYRGMT-MQVAVPRDELGRSNYGMIAI-NPGRVAASFS-QEALQYVV 1830
Query: 274 TKHEENTYWIFRSVINKYFSDYYTKTLTGVVRDIDVLSELVNDYYTKTLTGVVRDIDVL 332
+ + T W+ ++N Y + G +R +D ++ ++N + K ++ ID++
Sbjct: 1831 ERVGKRTGWLV-EIVN-YNVENQQYVAAGDLRALDTVTNVLN--FIK-----LQKIDII 1880
Score = 38.1 bits (88), Expect = 0.004
Identities = 38/219 (17%), Positives = 63/219 (28%), Gaps = 82/219 (37%)
Query: 178 VPWPVIATKWFIC-----MFADVLPVETVLRIWDCLFVEGPKILFRVSLTLIKLHER--- 229
V +FI F +LP T D + P T +L +
Sbjct: 18 HVLLVPTASFFIASQLQEQFNKILPEPTEGFAAD----DEPT-------TPAELVGKFLG 66
Query: 230 ---ALLECEDFTTLVECFKSMVRS--PAVL---NCHSFMSGL----------------NY 265
+L+E + + L + H+ + L NY
Sbjct: 67 YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY 126
Query: 266 IAALILL---------------VTKHEENTYWIF--RSVINKYFS---DYYTKTLTGVVR 305
I A I+ V + IF + + YF D Y +T +V
Sbjct: 127 ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLY-QTYHVLVG 185
Query: 306 DI-----DVLSELVND------YYTKTLTGVVRDIDVLS 333
D+ + LSEL+ +T+ L ++L
Sbjct: 186 DLIKFSAETLSELIRTTLDAEKVFTQGL-------NILE 217
Score = 33.5 bits (76), Expect = 0.13
Identities = 44/266 (16%), Positives = 81/266 (30%), Gaps = 87/266 (32%)
Query: 127 NTYWIFRSVIN---KYFSDYYTKTLTGVVRD----IDVLSELVKIK------MPHLYDHI 173
T + V N +F D Y ++ +V + + + K K +++ I
Sbjct: 1637 KTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETI 1696
Query: 174 SKVGVPWPVIATKWFICMFADVLPVETVLRIWDCLFVEGPK-ILFRVSLT--LIKLHERA 230
+F ++ T F K +L T + L E+A
Sbjct: 1697 VD--------GKLKTEKIFKEINEHST-----SYTF-RSEKGLLSATQFTQPALTLMEKA 1742
Query: 231 LLECEDFTTLVECFKSMVRSPAVLNCHS------------FMSGLNYIAALILLV----- 273
E L K ++ + A HS MS I +L+ +V
Sbjct: 1743 AFED-----LKS--KGLIPADATFAGHSLGEYAALASLADVMS----IESLVEVVFYRGM 1791
Query: 274 ------TKHEEN--TYWIFR---SVINKYFSDYYTKTLTGVVRDI-----DVLSELVND- 316
+ E Y + + FS + L VV + ++ E+VN
Sbjct: 1792 TMQVAVPRDELGRSNYGMIAINPGRVAASFSQ---EALQYVVERVGKRTGWLV-EIVNYN 1847
Query: 317 -----YYTKTLTGVVRDIDVLSELVK 337
Y G +R +D ++ ++
Sbjct: 1848 VENQQY---VAAGDLRALDTVTNVLN 1870
Score = 30.0 bits (67), Expect = 1.5
Identities = 41/282 (14%), Positives = 75/282 (26%), Gaps = 116/282 (41%)
Query: 27 IISEADTLKKVTHQT----RHYGTGGYYAFMLNNKILDPDIGETIRTDLPRTFPENIFFR 82
I A+TL ++ T + + G +I E + P P+ +
Sbjct: 188 IKFSAETLSELIRTTLDAEKVFTQG----L---------NILEWLEN--PSNTPDKDYLL 232
Query: 83 NSLEHQQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINKYFSD 142
+ +S L IG Q +Y+ LL E RS +
Sbjct: 233 SI-----PIS-----CPL----IGVIQLAHYVVTAKLLGFTPGE-----LRSYL------ 267
Query: 143 YYTKTLTGVVRDIDVLSELVKIKMPHLYDHISKVGVPWPVIATKW--FICMFADVLPVET 200
K TG + + ++ + I++ W F +
Sbjct: 268 ---KGATGHSQGL--VTAVA----------IAE--------TDSWESFFVSVRKAI---- 300
Query: 201 VLRIWDCLFVEGPKILFRVSLTLIKLHERALLECEDFTTLVECFKSMVRSPAVL-----N 255
+LF + + R E + + P++L N
Sbjct: 301 -------------TVLFFIGV-------RCY----------EAYPNTSLPPSILEDSLEN 330
Query: 256 CH---SFM---SGLNY--IAALILLVTKHEENTYWIFRSVIN 289
S M S L + + H + S++N
Sbjct: 331 NEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN 372
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 1.4
Identities = 6/29 (20%), Positives = 10/29 (34%)
Query: 30 EADTLKKVTHQTRHYGTGGYYAFMLNNKI 58
E LKK+ + Y A + +
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATM 46
Score = 28.4 bits (62), Expect = 2.2
Identities = 6/17 (35%), Positives = 11/17 (64%), Gaps = 3/17 (17%)
Query: 88 QQQLSRI---LKVFALD 101
+Q L ++ LK++A D
Sbjct: 19 KQALKKLQASLKLYADD 35
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF
hand, TIM barrel, C2 domain, GTPase, lipase, C binding,
GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q*
2rgn_A* 3ah8_A*
Length = 327
Score = 28.9 bits (64), Expect = 2.6
Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 17/96 (17%)
Query: 203 RIWDCLFVEGPKILFRVSLTLIKLHERALLECEDFTTLVEC---FKSMVRSPAVLNCHSF 259
R W F I+F V+L +++ L+E ++ + E F++++ P N
Sbjct: 182 RKWIHCFENVTSIMFLVAL---SEYDQVLVESDNENRMEESKALFRTIITYPWFQNSS-- 236
Query: 260 MSGLNYIAALILLVTKHEENTYWIFRSVINKYFSDY 295
+IL + K + I S + YF +Y
Sbjct: 237 ---------VILFLNKKDLLEEKIMYSHLVDYFPEY 263
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer,
signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP:
a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A*
1zca_A*
Length = 362
Score = 28.1 bits (62), Expect = 3.8
Identities = 29/149 (19%), Positives = 47/149 (31%), Gaps = 25/149 (16%)
Query: 158 LSELVKIKMPH--------LYDHISKVGVPWPVIATKWFICMFADVLPVETVLRIWDCLF 209
L L K+ +P L G+ K DV + + W F
Sbjct: 163 LDNLDKLGVPDYIPSQQDILLARRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECF 222
Query: 210 VEGPKILFRVSLTLIKLHERALLECEDFTTLVEC---FKSMVRSPAVLNCHSFMSGLNYI 266
ILF VS ++ L+E L E F+++V + N
Sbjct: 223 DSVTSILFLVSS---SEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVS--------- 270
Query: 267 AALILLVTKHEENTYWIFRSVINKYFSDY 295
+IL + K + + I YF ++
Sbjct: 271 --IILFLNKTDLLEEKVQVVSIKDYFLEF 297
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding
protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A*
3amu_A*
Length = 402
Score = 27.6 bits (61), Expect = 6.4
Identities = 11/63 (17%), Positives = 21/63 (33%)
Query: 264 NYIAALILLVTKHEENTYWIFRSVINKYFSDYYTKTLTGVVRDIDVLSELVNDYYTKTLT 323
A L+ + VI ++ KT G V + L+ + + K +
Sbjct: 75 GNGAVSFLVEVDDVGELVDVVNEVIIEHAMLDDEKTNPGAVFVDEELAVKLKPFADKAIK 134
Query: 324 GVV 326
V+
Sbjct: 135 DVL 137
>1h6z_A Pyruvate phosphate dikinase; transferase, tropical parasite,
trypanosome; 3.00A {Trypanosoma brucei} SCOP: c.1.12.2
c.8.1.1 d.142.1.5 PDB: 2x0s_A
Length = 913
Score = 27.8 bits (62), Expect = 7.2
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 17/66 (25%)
Query: 188 FICMFADVLPVETVLRIWDCLFVEGPKILFRVSLTLIKLHERAL----LECEDFTTLVEC 243
FI M+AD+ V+++ + F +L+ +K L D L +
Sbjct: 142 FITMYADI-----VMQV--------GREDFEEALSRMKERRGTKFDTDLTASDLKELCDG 188
Query: 244 FKSMVR 249
+ +
Sbjct: 189 YLELFE 194
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.139 0.423
Gapped
Lambda K H
0.267 0.0651 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,273,324
Number of extensions: 315872
Number of successful extensions: 693
Number of sequences better than 10.0: 1
Number of HSP's gapped: 666
Number of HSP's successfully gapped: 28
Length of query: 337
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 243
Effective length of database: 4,077,219
Effective search space: 990764217
Effective search space used: 990764217
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (25.9 bits)