RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3328
         (337 letters)



>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 188

 Score = 78.7 bits (193), Expect = 4e-18
 Identities = 23/107 (21%), Positives = 39/107 (36%)

Query: 150 GVVRDIDVLSELVKIKMPHLYDHISKVGVPWPVIATKWFICMFADVLPVETVLRIWDCLF 209
           G++R +  LS+LVK     LY+H     V +   A +W  C+      + TV+R+WD   
Sbjct: 4   GILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYL 63

Query: 210 VEGPKILFRVSLTLIKLHERALLECEDFTTLVECFKSMVRSPAVLNC 256
            E  + +           +  +   E             +SP     
Sbjct: 64  SETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALS 110


>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 194

 Score = 69.5 bits (169), Expect = 1e-14
 Identities = 25/127 (19%), Positives = 39/127 (30%), Gaps = 6/127 (4%)

Query: 24  IWMIISEADTLK-----KVTHQTRHYGTGGYYAFMLNNKILDPDIGETIRTDLPRTFPEN 78
           +W ++     +          + R            +    D      I  D+PRT P  
Sbjct: 41  VWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTFSDQHSRDIPTWHQIEIDIPRTNPHI 100

Query: 79  IFFRNSLEHQQQLSRILKVFALDEKNIGYCQGLNYIAALILLVTKHEENTYWIFRSVINK 138
             ++     Q  L RIL ++A+     GY QG+N +          E         V  K
Sbjct: 101 PLYQFK-SVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIK 159

Query: 139 YFSDYYT 145
             S Y  
Sbjct: 160 DPSTYMV 166


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.139    0.423 

Gapped
Lambda     K      H
   0.267   0.0643    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,300,546
Number of extensions: 60980
Number of successful extensions: 154
Number of sequences better than 10.0: 1
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 5
Length of query: 337
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 251
Effective length of database: 1,226,816
Effective search space: 307930816
Effective search space used: 307930816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.4 bits)