BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3329
(694 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 86/180 (47%), Gaps = 5/180 (2%)
Query: 193 LDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSR 252
LDL + L L AF TKLR LYL+ N L + K L L L + + L
Sbjct: 42 LDLQSNKL-SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGI-FKELKNLETLWVTDNKLQA 99
Query: 253 LPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSL 312
LP F + L EL + N L + L L +L +GY+ LQ + + F K+TSL
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159
Query: 313 KTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNP 372
K L L N+L+ + G F LT L L+L+N L R+ E F + L+ L+L NP
Sbjct: 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFD---SLEKLKMLQLQENP 216
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 75/159 (47%), Gaps = 6/159 (3%)
Query: 7 VYNDRRNLDNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTL 66
++ + +NL+ + L A PI G F +L L + L + P+ F +LT L
Sbjct: 80 IFKELKNLETLWVTDNKLQALPI----GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL 135
Query: 67 NKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKS 126
L L N L+ + GVFD LTSL+ L L L + AFD L LKTL+L N+LK
Sbjct: 136 TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR 195
Query: 127 HIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLR 165
+ +L KL L L+++ + + WL+
Sbjct: 196 VPEG--AFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLK 232
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 70/150 (46%), Gaps = 3/150 (2%)
Query: 24 LNANPIQPV-EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPG 82
LN N +Q + G F ++L L++ + L + F L L +L L N L+ + P
Sbjct: 68 LNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPR 127
Query: 83 VFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDT 142
VFD LT L YL L L + FD L LK L L N+LK + L +L T
Sbjct: 128 VFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEG--AFDKLTELKT 185
Query: 143 LDLRQSGISNLPDNVFANNTWLRNLNLAEN 172
L L + + +P+ F + L+ L L EN
Sbjct: 186 LKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 78/190 (41%), Gaps = 29/190 (15%)
Query: 35 AFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLM 94
AF L LY+ + L + F L L L ++ N L+ + GVFD L +L L
Sbjct: 56 AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR 115
Query: 95 LNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLP 154
L+R L + P FD+L L L L N+L+S LP
Sbjct: 116 LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS--------------------------LP 149
Query: 155 DNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATK 214
VF T L+ L L N+L V L L +L L N LK + E AF + K
Sbjct: 150 KGVFDKLTSLKELRLYNNQLK--RVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEK 206
Query: 215 LRTLYLSGNP 224
L+ L L NP
Sbjct: 207 LKMLQLQENP 216
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 72/140 (51%), Gaps = 3/140 (2%)
Query: 241 HRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQR 300
+L L++ LS LP+ FHR T L+ L ++ N L + L++LE L + + LQ
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99
Query: 301 ISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTY 360
+ F ++ +L L L N+L++L +F +LT L+ L L L L + VF +
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK---L 156
Query: 361 PDLEELRLSGNPLHVLPDST 380
L+ELRL N L +P+
Sbjct: 157 TSLKELRLYNNQLKRVPEGA 176
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 94/201 (46%), Gaps = 32/201 (15%)
Query: 143 LDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKG 202
LDL+ + +S+LP F T LR L L +N+L L + + L +L++L +++ L+
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG--IFKELKNLETLWVTDNKLQA 99
Query: 203 -PLSE-DAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHR 260
P+ D VN +LR L N L + V LTKL LSL L LP F +
Sbjct: 100 LPIGVFDQLVNLAELR---LDRNQLKSLPPRV-FDSLTKLTYLSLGYNELQSLPKGVFDK 155
Query: 261 FTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGN 320
T L+EL + +N L+R+ F K+T LKTL L N
Sbjct: 156 LTSLKELRLYNN------------------------QLKRVPEGAFDKLTELKTLKLDNN 191
Query: 321 KLETLESGLFQNLTHLSVLEL 341
+L+ + G F +L L +L+L
Sbjct: 192 QLKRVPEGAFDSLEKLKMLQL 212
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 81/179 (45%), Gaps = 6/179 (3%)
Query: 68 KLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSH 127
KLDL N L + F LT L L LN L + F L +L+TL ++ NKL++
Sbjct: 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL 100
Query: 128 IDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNL 187
V L L L L ++ + +LP VF + T L L+L NEL L + L
Sbjct: 101 P--IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL--PKGVFDKL 156
Query: 188 VHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLR 246
L L L N LK + E AF T+L+TL L N L A L KL L L+
Sbjct: 157 TSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVP-EGAFDSLEKLKMLQLQ 213
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 69/279 (24%), Positives = 103/279 (36%), Gaps = 66/279 (23%)
Query: 289 EHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTR 348
+ LD+ + L + F ++T L+ L L+ NKL+TL +G+F+ L +L L + + L
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99
Query: 349 LNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNET 408
L VF + +L ELRL N L +++P ++ FD L L
Sbjct: 100 LPIGVFDQ---LVNLAELRLDRNQL------------KSLPPRV---FDSLTKL------ 135
Query: 409 VFHENYTYPDLEELRLSGNPLHVLPTGNXXXXXXXXXXXXXXXXCKIDYLPPNVFNNTRN 468
TY L L N L LP G VF+ +
Sbjct: 136 ------TY-----LSLGYNELQSLPKG--------------------------VFDKLTS 158
Query: 469 ITSLNLANNNLSMTSELSFQFXXXXXXXXXXXXXXXXXTHISPTVLRHNRAITSIKLVGN 528
+ L L NN L E +F + + ++L N
Sbjct: 159 LKELRLYNNQLKRVPEGAFD---KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Query: 529 PWKCDCN-IADMWEWATREKGDIGVLVGSTTPTEIGFGA 566
PW C CN I M +W ++K D G+ T E G A
Sbjct: 216 PWDCTCNGIIYMAKW-LKKKADEGLGGVDTAGCEKGGKA 253
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 80/298 (26%), Positives = 135/298 (45%), Gaps = 28/298 (9%)
Query: 69 LDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHI 128
LDL N ++ + F LE L LN ++ + P AF+NL +L+TL L N+LK +
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK--L 94
Query: 129 DWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLV 188
V L L LD+ ++ I L D +F + L++L + +N+L+ + G N
Sbjct: 95 IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN-- 152
Query: 189 HLDSLDLSNC-----------HLKG------------PLSEDAFVNATKLRTLYLSGNPL 225
L+ L L C HL G + + +F +L+ L +S P
Sbjct: 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212
Query: 226 SAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPL 285
L L L LS+ +C L+ +P L+ L++S+NP+ ++L L
Sbjct: 213 LDTMTPNCLYGL-NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL 271
Query: 286 ESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNN 343
L+ + + L + F + L+ L +SGN+L TLE +F ++ +L L L++
Sbjct: 272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 86/277 (31%), Positives = 129/277 (46%), Gaps = 9/277 (3%)
Query: 17 PGLITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP 75
P L + LN N + VE GAF +L L ++ L I FT L+ L KLD+S N
Sbjct: 56 PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK 115
Query: 76 LRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLG 135
+ I+ +F L +L+ L + +L YIS AF LN L+ L L + L S T L
Sbjct: 116 IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS--IPTEALS 173
Query: 136 NLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTL-GQNLVHLDSLD 194
+L L L LR I+ + D F L+ L ++ +D L G NL SL
Sbjct: 174 HLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLT---SLS 230
Query: 195 LSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLP 254
+++C+L + A + LR L LS NP+S + S+ L L +L + L L+ +
Sbjct: 231 ITHCNLTA-VPYLAVRHLVYLRFLNLSYNPISTIEGSM-LHELLRLQEIQLVGGQLAVVE 288
Query: 255 ANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHL 291
F L+ L++S N L ++ + +LE L
Sbjct: 289 PYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETL 325
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 69/150 (46%), Gaps = 15/150 (10%)
Query: 253 LPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSL 312
L + F F L+EL+++ N + + L +L L + + L+ I F +++L
Sbjct: 47 LNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNL 106
Query: 313 KTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNP 372
L +S NK+ L +FQ+L +L LE+ + L ++ F LE+L L
Sbjct: 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS---GLNSLEQLTL---- 159
Query: 373 LHVLPDSTKQYSMRTIPTQIWKNFDFLVIL 402
++ ++ +IPT+ + L++L
Sbjct: 160 --------EKCNLTSIPTEALSHLHGLIVL 181
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 116/252 (46%), Gaps = 31/252 (12%)
Query: 44 YLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYI 103
YL +QE ++ I F +L L L LS N +R IE G F+ L SL L L LT +
Sbjct: 39 YLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTV 98
Query: 104 SPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTW 163
AF+ L+ L+ L W LR + I ++P F
Sbjct: 99 PTQAFEYLSKLREL------------W--------------LRNNPIESIPSYAFNRVPS 132
Query: 164 LRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGN 223
LR L+L E + ++ ++ + LV+L L+L C+LK + A V +L L LSGN
Sbjct: 133 LRRLDLGELKRLEY-ISEAAFEGLVNLRYLNLGMCNLKDIPNLTALV---RLEELELSGN 188
Query: 224 PLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLS 283
L + + LT L +L L + ++ + N F L+EL++SHN L+ L +
Sbjct: 189 RLDLIRPG-SFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFT 247
Query: 284 PLESLEHLDMGY 295
PL LE + + +
Sbjct: 248 PLHRLERVHLNH 259
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 50/94 (53%), Gaps = 2/94 (2%)
Query: 33 EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEY 92
E AF +L YL + C L I P T L L +L+LSGN L +I PG F LTSL
Sbjct: 149 EAAFEGLVNLRYLNLGMCNLKDI-PNL-TALVRLEELELSGNRLDLIRPGSFQGLTSLRK 206
Query: 93 LMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKS 126
L L + I +AFD+L L+ L LS N L S
Sbjct: 207 LWLMHAQVATIERNAFDDLKSLEELNLSHNNLMS 240
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 111/249 (44%), Gaps = 33/249 (13%)
Query: 150 ISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAF 209
++ +P ++ N R LNL EN + + T ++L HL+ L LS +L + AF
Sbjct: 26 LAEVPASIPVNT---RYLNLQENSI--QVIRTDTFKHLRHLEILQLSK-NLVRKIEVGAF 79
Query: 210 VNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDI 269
L TL L N L+ + A + L+KL L LRN + +P+ F+R L+ LD+
Sbjct: 80 NGLPSLNTLELFDNRLTTVP-TQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDL 138
Query: 270 SHNPLID-----AFTAL------------------LSPLESLEHLDMGYSNLQRISRSTF 306
++ AF L L+ L LE L++ + L I +F
Sbjct: 139 GELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSF 198
Query: 307 LKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEEL 366
+TSL+ L L ++ T+E F +L L L L++ L L +F + LE +
Sbjct: 199 QGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLH---RLERV 255
Query: 367 RLSGNPLHV 375
L+ NP H
Sbjct: 256 HLNHNPWHC 264
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 99/205 (48%), Gaps = 9/205 (4%)
Query: 22 INLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIE 80
+ L+ N ++ +E GAF SL L + + L+ + Q F L+ L +L L NP+ I
Sbjct: 64 LQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIP 123
Query: 81 PGVFDPLTSLEYLMLNRCN-LTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGK 139
F+ + SL L L L YIS +AF+ L +L+ L L LK + T ++ +
Sbjct: 124 SYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALV----R 179
Query: 140 LDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCH 199
L+ L+L + + + F T LR L L ++ ++ +L L+ L+LS+ +
Sbjct: 180 LEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIE--RNAFDDLKSLEELNLSHNN 237
Query: 200 LKGPLSEDAFVNATKLRTLYLSGNP 224
L L D F +L ++L+ NP
Sbjct: 238 LMS-LPHDLFTPLHRLERVHLNHNP 261
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 114/279 (40%), Gaps = 62/279 (22%)
Query: 290 HLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRL 349
+L++ +++Q I TF + L+ L LS N + +E G F L L+ LEL + LT
Sbjct: 39 YLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLT-- 96
Query: 350 NETVFHENYTY-PDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNET 408
TV + + Y L EL L NP+ +P Y+ +P+ + L L ++E
Sbjct: 97 --TVPTQAFEYLSKLRELWLRNNPIESIPS----YAFNRVPSLRRLDLGELKRLEYISEA 150
Query: 409 VFHE--NYTYPDL-----------------EELRLSGNPLHVLPTGNXXXXXXXXXXXXX 449
F N Y +L EEL LSGN L ++ G+
Sbjct: 151 AFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLM 210
Query: 450 XXXCKIDYLPPNVFNNTRNITSLNLANNNL-SMTSELSFQFXXXXXXXXXXXXXXXXXTH 508
++ + N F++ +++ LNL++NNL S+ +L
Sbjct: 211 HA--QVATIERNAFDDLKSLEELNLSHNNLMSLPHDL----------------------- 245
Query: 509 ISPTVLRHNRAITSIKLVGNPWKCDCNIADMW-EWATRE 546
+P + + L NPW C+C++ +W W +E
Sbjct: 246 FTPL-----HRLERVHLNHNPWHCNCDV--LWLSWWLKE 277
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 37/78 (47%)
Query: 52 LSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNL 111
L I P F LT+L KL L + IE FD L SLE L L+ NL + F L
Sbjct: 190 LDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPL 249
Query: 112 NHLKTLELSQNKLKSHID 129
+ L+ + L+ N + D
Sbjct: 250 HRLERVHLNHNPWHCNCD 267
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 116/252 (46%), Gaps = 31/252 (12%)
Query: 44 YLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYI 103
YL +QE ++ I F +L L L LS N +R IE G F+ L SL L L LT +
Sbjct: 39 YLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTV 98
Query: 104 SPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTW 163
AF+ L+ L+ L W LR + I ++P F
Sbjct: 99 PTQAFEYLSKLREL------------W--------------LRNNPIESIPSYAFNRVPS 132
Query: 164 LRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGN 223
LR L+L E + ++ ++ + LV+L L+L C+LK + A V +L L LSGN
Sbjct: 133 LRRLDLGELKRLEY-ISEAAFEGLVNLRYLNLGMCNLKDIPNLTALV---RLEELELSGN 188
Query: 224 PLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLS 283
L + + LT L +L L + ++ + N F L+EL++SHN L+ L +
Sbjct: 189 RLDLIRPG-SFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFT 247
Query: 284 PLESLEHLDMGY 295
PL LE + + +
Sbjct: 248 PLHRLERVHLNH 259
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 50/94 (53%), Gaps = 2/94 (2%)
Query: 33 EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEY 92
E AF +L YL + C L I P T L L +L+LSGN L +I PG F LTSL
Sbjct: 149 EAAFEGLVNLRYLNLGMCNLKDI-PNL-TALVRLEELELSGNRLDLIRPGSFQGLTSLRK 206
Query: 93 LMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKS 126
L L + I +AFD+L L+ L LS N L S
Sbjct: 207 LWLMHAQVATIERNAFDDLKSLEELNLSHNNLMS 240
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 111/249 (44%), Gaps = 33/249 (13%)
Query: 150 ISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAF 209
++ +P ++ N R LNL EN + + T ++L HL+ L LS +L + AF
Sbjct: 26 LAEVPASIPVNT---RYLNLQENSI--QVIRTDTFKHLRHLEILQLSK-NLVRKIEVGAF 79
Query: 210 VNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDI 269
L TL L N L+ + A + L+KL L LRN + +P+ F+R L+ LD+
Sbjct: 80 NGLPSLNTLELFDNRLTTVP-TQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDL 138
Query: 270 SHNPLID-----AFTAL------------------LSPLESLEHLDMGYSNLQRISRSTF 306
++ AF L L+ L LE L++ + L I +F
Sbjct: 139 GELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSF 198
Query: 307 LKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEEL 366
+TSL+ L L ++ T+E F +L L L L++ L L +F + LE +
Sbjct: 199 QGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHR---LERV 255
Query: 367 RLSGNPLHV 375
L+ NP H
Sbjct: 256 HLNHNPWHC 264
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 114/279 (40%), Gaps = 62/279 (22%)
Query: 290 HLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRL 349
+L++ +++Q I TF + L+ L LS N + +E G F L L+ LEL + LT
Sbjct: 39 YLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLT-- 96
Query: 350 NETVFHENYTY-PDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNET 408
TV + + Y L EL L NP+ +P Y+ +P+ + L L ++E
Sbjct: 97 --TVPTQAFEYLSKLRELWLRNNPIESIPS----YAFNRVPSLRRLDLGELKRLEYISEA 150
Query: 409 VFHE--NYTYPDL-----------------EELRLSGNPLHVLPTGNXXXXXXXXXXXXX 449
F N Y +L EEL LSGN L ++ G+
Sbjct: 151 AFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLM 210
Query: 450 XXXCKIDYLPPNVFNNTRNITSLNLANNNL-SMTSELSFQFXXXXXXXXXXXXXXXXXTH 508
++ + N F++ +++ LNL++NNL S+ +L
Sbjct: 211 HA--QVATIERNAFDDLKSLEELNLSHNNLMSLPHDL----------------------- 245
Query: 509 ISPTVLRHNRAITSIKLVGNPWKCDCNIADMW-EWATRE 546
+P + + L NPW C+C++ +W W +E
Sbjct: 246 FTPL-----HRLERVHLNHNPWHCNCDV--LWLSWWLKE 277
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 100/208 (48%), Gaps = 9/208 (4%)
Query: 19 LITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLR 77
L + L+ N ++ +E GAF SL L + + L+ + Q F L+ L +L L NP+
Sbjct: 61 LEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE 120
Query: 78 IIEPGVFDPLTSLEYLMLNRCN-LTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGN 136
I F+ + SL L L L YIS +AF+ L +L+ L L LK + T ++
Sbjct: 121 SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALV-- 178
Query: 137 LGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLS 196
+L+ L+L + + + F T LR L L ++ ++ +L L+ L+LS
Sbjct: 179 --RLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIE--RNAFDDLKSLEELNLS 234
Query: 197 NCHLKGPLSEDAFVNATKLRTLYLSGNP 224
+ +L L D F +L ++L+ NP
Sbjct: 235 HNNLMS-LPHDLFTPLHRLERVHLNHNP 261
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 37/78 (47%)
Query: 52 LSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNL 111
L I P F LT+L KL L + IE FD L SLE L L+ NL + F L
Sbjct: 190 LDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPL 249
Query: 112 NHLKTLELSQNKLKSHID 129
+ L+ + L+ N + D
Sbjct: 250 HRLERVHLNHNPWHCNCD 267
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 87/320 (27%), Positives = 147/320 (45%), Gaps = 47/320 (14%)
Query: 65 TLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFD-NLNHLKTLELSQNK 123
TL + +L G ++ F PLTSLE L+L N+ I P++F N+ L+L+ NK
Sbjct: 109 TLTQCNLDG---AVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK 165
Query: 124 LKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVF----------ANNTWLRNLNLAENE 173
+KS + L L GK TL LR S I+ N + NT + L+L+ N
Sbjct: 166 VKSICEEDL-LNFQGKHFTL-LRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG 223
Query: 174 LID-------------------LDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATK 214
+ L + +G + H + D N KG + A+
Sbjct: 224 FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG-------LEASG 276
Query: 215 LRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPL 274
++T LS + + A L T L +L+L ++++ N F T L +L++S N L
Sbjct: 277 VKTCDLSKSKIFAL-LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL 335
Query: 275 IDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLT 334
+ + L+ LE LD+ Y++++ + +FL + +LK L L N+L+++ G+F LT
Sbjct: 336 GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLT 395
Query: 335 HLSVLELN----NCGLTRLN 350
L + L+ +C R++
Sbjct: 396 SLQKIWLHTNPWDCSCPRID 415
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
Query: 19 LITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLR 77
L + L N I ++ AF LL L + + L I+ + F NL L LDLS N +R
Sbjct: 301 LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR 360
Query: 78 IIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQN 122
+ F L +L+ L L+ L + FD L L+ + L N
Sbjct: 361 ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 65/143 (45%), Gaps = 10/143 (6%)
Query: 247 NCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRS-T 305
N GL ++P H + +D+S N + + S L+ L+ L + + R+ T
Sbjct: 19 NRGLHQVPELPAH----VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNT 74
Query: 306 FLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYP--DL 363
F ++SL L L N+ LE+G F L +L VL L C L+ V N+ P L
Sbjct: 75 FRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQC---NLDGAVLSGNFFKPLTSL 131
Query: 364 EELRLSGNPLHVLPDSTKQYSMR 386
E L L N + + ++ +MR
Sbjct: 132 EMLVLRDNNIKKIQPASFFLNMR 154
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 89/403 (22%), Positives = 138/403 (34%), Gaps = 79/403 (19%)
Query: 154 PDNVFANNTW-----LRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDA 208
P V NNT+ L L L N+ + L+ G L +L+ L L+ C+L G +
Sbjct: 66 PGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNG--LANLEVLTLTQCNLDGAV---- 119
Query: 209 FVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRL-PANTFHRFTCLQEL 267
LSGN KPLT L L LR+ + ++ PA+ F L
Sbjct: 120 -----------LSGN---------FFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVL 159
Query: 268 DISHNPLIDA------------FTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTL 315
D++ N + FT L L S+ DM L K TS+ TL
Sbjct: 160 DLTFNKVKSICEEDLLNFQGKHFTLL--RLSSITLQDMNEYWLGWEKCGNPFKNTSITTL 217
Query: 316 ILSGNKL-ETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPD---LEELRLSGN 371
LSGN E++ F + + L + + H N+ PD + L SG
Sbjct: 218 DLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGV 277
Query: 372 PLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHV 431
L S +F L ++VF + DLE+L L+ N ++
Sbjct: 278 KTCDLSKSK---------------------IFALLKSVFSH---FTDLEQLTLAQNEINK 313
Query: 432 LPTGNXXXXXXXXXXXXXXXXCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFXX 491
+ + + +F N + L+L+ N++ + SF
Sbjct: 314 IDDNAFWGLTHLLKLNLSQNF--LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSF---L 368
Query: 492 XXXXXXXXXXXXXXXTHISPTVLRHNRAITSIKLVGNPWKCDC 534
+ + ++ I L NPW C C
Sbjct: 369 GLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 411
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 111/227 (48%), Gaps = 7/227 (3%)
Query: 69 LDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHI 128
L+L N ++II+ F L LE L L+R ++ I AF+ L +L TLEL N+L +
Sbjct: 69 LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP 128
Query: 129 DWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLV 188
+ V L KL L LR + I ++P F LR L+L E + + ++ + L
Sbjct: 129 NGAFVY--LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY-ISEGAFEGLS 185
Query: 189 HLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNC 248
+L L+L+ C+L+ + + KL L LSGN LSA + + L L +L +
Sbjct: 186 NLRYLNLAMCNLREIPNLTPLI---KLDELDLSGNHLSAIRPG-SFQGLMHLQKLWMIQS 241
Query: 249 GLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGY 295
+ + N F L E++++HN L L +PL LE + + +
Sbjct: 242 QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 109/243 (44%), Gaps = 33/243 (13%)
Query: 153 LPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNA 212
+PD + N R LNL EN++ + V + ++L HL+ L LS H++ + AF
Sbjct: 58 VPDGISTNT---RLLNLHENQIQIIKVNSF--KHLRHLEILQLSRNHIR-TIEIGAFNGL 111
Query: 213 TKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHN 272
L TL L N L+ + A L+KL L LRN + +P+ F+R L+ LD+
Sbjct: 112 ANLNTLELFDNRLTTIP-NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL 170
Query: 273 PLID-----AFTAL------------------LSPLESLEHLDMGYSNLQRISRSTFLKM 309
+ AF L L+PL L+ LD+ ++L I +F +
Sbjct: 171 KRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGL 230
Query: 310 TSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLS 369
L+ L + ++++ +E F NL L + L + LT L +F + LE + L
Sbjct: 231 MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH---HLERIHLH 287
Query: 370 GNP 372
NP
Sbjct: 288 HNP 290
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 33 EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEY 92
EGAF +L YL + C L +I P T L L++LDLSGN L I PG F L L+
Sbjct: 178 EGAFEGLSNLRYLNLAMCNLREI-PNL-TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQK 235
Query: 93 LMLNRCNLTYISPSAFDNLNHLKTLELSQNKL 124
L + + + I +AFDNL L + L+ N L
Sbjct: 236 LWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 109/271 (40%), Gaps = 55/271 (20%)
Query: 291 LDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLN 350
L++ + +Q I ++F + L+ L LS N + T+E G F L +L+ LEL + LT +
Sbjct: 69 LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP 128
Query: 351 ETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVF 410
F L+EL L NP+ +P Y+ IP+ + L L ++E F
Sbjct: 129 NGAF---VYLSKLKELWLRNNPIESIPS----YAFNRIPSLRRLDLGELKRLSYISEGAF 181
Query: 411 H--ENYTYPDL-----------------EELRLSGNPLHVLPTGNXXXXXXXXXXXXXXX 451
N Y +L +EL LSGN L + G+
Sbjct: 182 EGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241
Query: 452 XCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFXXXXXXXXXXXXXXXXXTHISP 511
+I + N F+N +++ +NLA+NNL++ F
Sbjct: 242 --QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLF------------------------ 275
Query: 512 TVLRHNRAITSIKLVGNPWKCDCNIADMWEW 542
T L H + I L NPW C+C+I + W
Sbjct: 276 TPLHH---LERIHLHHNPWNCNCDILWLSWW 303
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 110/253 (43%), Gaps = 32/253 (12%)
Query: 22 INLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIE 80
+NL+ N IQ ++ +F R L L + + I F L LN L+L N L I
Sbjct: 69 LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP 128
Query: 81 PGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKL 140
G F L+ L+ L L + I AF+ + L+ L+L + K S+I + G
Sbjct: 129 NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYI-------SEGAF 181
Query: 141 DTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHL 200
+ G+SN LR LNLA L ++ T L+ LD LDLS HL
Sbjct: 182 E-------GLSN-----------LRYLNLAMCNLREIPNLTP----LIKLDELDLSGNHL 219
Query: 201 KGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHR 260
+ +F L+ L++ + + + + A L L ++L + L+ LP + F
Sbjct: 220 SA-IRPGSFQGLMHLQKLWMIQSQIQVIERN-AFDNLQSLVEINLAHNNLTLLPHDLFTP 277
Query: 261 FTCLQELDISHNP 273
L+ + + HNP
Sbjct: 278 LHHLERIHLHHNP 290
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 95/202 (47%), Gaps = 13/202 (6%)
Query: 153 LPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNA 212
PD+ FA NL + + D A T + L +D + +N +K S
Sbjct: 13 FPDDAFAETI---KANLKKKSVTD---AVTQNE-LNSIDQIIANNSDIK---SVQGIQYL 62
Query: 213 TKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHN 272
+R L L GN L D+S ALK LT L L L L LP F + T L+EL + N
Sbjct: 63 PNVRYLALGGNKLH--DIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119
Query: 273 PLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQN 332
L + L +L +L++ ++ LQ + + F K+T+L L LS N+L++L G+F
Sbjct: 120 QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK 179
Query: 333 LTHLSVLELNNCGLTRLNETVF 354
LT L L L L + + VF
Sbjct: 180 LTQLKDLRLYQNQLKSVPDGVF 201
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 62/112 (55%), Gaps = 2/112 (1%)
Query: 63 LTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQN 122
LT L L L+GN L+ + GVFD LT+L+ L+L L + FD L +L L L+ N
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN 143
Query: 123 KLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENEL 174
+L+S V L L LDL + + +LP+ VF T L++L L +N+L
Sbjct: 144 QLQSLPKG--VFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 67/131 (51%), Gaps = 2/131 (1%)
Query: 42 LLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLT 101
L YL + L + F LT L +L L N L+ + GVFD LT+L YL L L
Sbjct: 87 LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ 146
Query: 102 YISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANN 161
+ FD L +L L+LS N+L+S + V L +L L L Q+ + ++PD VF
Sbjct: 147 SLPKGVFDKLTNLTELDLSYNQLQSLPEG--VFDKLTQLKDLRLYQNQLKSVPDGVFDRL 204
Query: 162 TWLRNLNLAEN 172
T L+ + L +N
Sbjct: 205 TSLQYIWLHDN 215
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Query: 24 LNANPIQPV-EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPG 82
L N +Q + G F +L L + E L + F LT L L+L+ N L+ + G
Sbjct: 92 LTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG 151
Query: 83 VFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHID 129
VFD LT+L L L+ L + FD L LK L L QN+LKS D
Sbjct: 152 VFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 78/205 (38%), Gaps = 56/205 (27%)
Query: 69 LDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHI 128
L L GN L I LT+L YL+L L + FD L +LK L L +N+L+S
Sbjct: 68 LALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS-- 123
Query: 129 DWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLV 188
LPD VF T L LNLA N+L L + L
Sbjct: 124 ------------------------LPDGVFDKLTNLTYLNLAHNQLQSL--PKGVFDKLT 157
Query: 189 HLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNC 248
+L LDLS L+ L E F T+L+ L L N L +
Sbjct: 158 NLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQNQLKS--------------------- 195
Query: 249 GLSRLPANTFHRFTCLQELDISHNP 273
+P F R T LQ + + NP
Sbjct: 196 ----VPDGVFDRLTSLQYIWLHDNP 216
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 68/293 (23%), Positives = 100/293 (34%), Gaps = 92/293 (31%)
Query: 285 LESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNC 344
L ++ +L +G + L IS ++T+L LIL+GN+L++L +G+F LT+L
Sbjct: 62 LPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNL-------- 111
Query: 345 GLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFI 404
+EL L N L LPD FD L
Sbjct: 112 -------------------KELVLVENQLQSLPDGV---------------FDKLT---- 133
Query: 405 LNETVFHENYTYPDLEELRLSGNPLHVLPTGNXXXXXXXXXXXXXXXXCKIDYLPPNVFN 464
N TY L L+ N L LP G VF+
Sbjct: 134 --------NLTY-----LNLAHNQLQSLPKG--------------------------VFD 154
Query: 465 NTRNITSLNLANNNLSMTSELSFQFXXXXXXXXXXXXXXXXXTHISPTVLRHNRAITSIK 524
N+T L+L+ N L E F + V ++ I
Sbjct: 155 KLTNLTELDLSYNQLQSLPEGVFD---KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW 211
Query: 525 LVGNPWKCDC-NIADMWEWATREKGDIGVLVGSTTPTEIGF-GASRKKKGLVC 575
L NPW C C I + EW + G + GS P G+ + + ++C
Sbjct: 212 LHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVAPDSAKCSGSGKPVRSIIC 264
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 73/140 (52%), Gaps = 3/140 (2%)
Query: 215 LRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPL 274
+R L L GN L D+S ALK LT L L L L LP F + T L+EL + N L
Sbjct: 65 VRYLALGGNKLH--DIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121
Query: 275 IDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLT 334
+ L +L +L + ++ LQ + + F K+T+L L L N+L++L G+F LT
Sbjct: 122 QSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLT 181
Query: 335 HLSVLELNNCGLTRLNETVF 354
L L LN+ L + + VF
Sbjct: 182 QLKQLSLNDNQLKSVPDGVF 201
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 62/130 (47%), Gaps = 1/130 (0%)
Query: 208 AFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQEL 267
A T L L L+GN L + V K LT L L L L LP F + T L L
Sbjct: 80 ALKELTNLTYLILTGNQLQSLPNGVFDK-LTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 268 DISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLES 327
+ HN L + L +L LD+ + LQ + F K+T LK L L+ N+L+++
Sbjct: 139 YLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPD 198
Query: 328 GLFQNLTHLS 337
G+F LT L+
Sbjct: 199 GVFDRLTSLT 208
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 64/131 (48%), Gaps = 2/131 (1%)
Query: 42 LLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLT 101
L YL + L + F LT L +L L N L+ + GVFD LT+L YL L L
Sbjct: 87 LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQ 146
Query: 102 YISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANN 161
+ FD L +L L+L N+L+S + V L +L L L + + ++PD VF
Sbjct: 147 SLPKGVFDKLTNLTRLDLDNNQLQSLPEG--VFDKLTQLKQLSLNDNQLKSVPDGVFDRL 204
Query: 162 TWLRNLNLAEN 172
T L ++ L N
Sbjct: 205 TSLTHIWLLNN 215
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 43/90 (47%)
Query: 33 EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEY 92
+G F +L YLY+ L + F LT L +LDL N L+ + GVFD LT L+
Sbjct: 126 DGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQ 185
Query: 93 LMLNRCNLTYISPSAFDNLNHLKTLELSQN 122
L LN L + FD L L + L N
Sbjct: 186 LSLNDNQLKSVPDGVFDRLTSLTHIWLLNN 215
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 77/205 (37%), Gaps = 56/205 (27%)
Query: 69 LDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHI 128
L L GN L I LT+L YL+L L + FD L +LK L L +N+L+S
Sbjct: 68 LALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS-- 123
Query: 129 DWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLV 188
LPD VF T L L L N+L L + L
Sbjct: 124 ------------------------LPDGVFDKLTNLTYLYLYHNQLQSL--PKGVFDKLT 157
Query: 189 HLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNC 248
+L LDL N L+ L E F LT+L +LSL +
Sbjct: 158 NLTRLDLDNNQLQS-LPEGVF-------------------------DKLTQLKQLSLNDN 191
Query: 249 GLSRLPANTFHRFTCLQELDISHNP 273
L +P F R T L + + +NP
Sbjct: 192 QLKSVPDGVFDRLTSLTHIWLLNNP 216
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 91/265 (34%), Gaps = 91/265 (34%)
Query: 285 LESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNC 344
L ++ +L +G + L IS ++T+L LIL+GN+L++L +G+F LT+
Sbjct: 62 LPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTN--------- 110
Query: 345 GLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFI 404
L+EL L N L LPD FD L
Sbjct: 111 ------------------LKELVLVENQLQSLPDGV---------------FDKLT---- 133
Query: 405 LNETVFHENYTYPDLEELRLSGNPLHVLPTGNXXXXXXXXXXXXXXXXCKIDYLPPNVFN 464
N TY L L N L LP G VF+
Sbjct: 134 --------NLTY-----LYLYHNQLQSLPKG--------------------------VFD 154
Query: 465 NTRNITSLNLANNNLSMTSELSFQFXXXXXXXXXXXXXXXXXTHISPTVLRHNRAITSIK 524
N+T L+L NN L E F + V ++T I
Sbjct: 155 KLTNLTRLDLDNNQLQSLPEGVFD---KLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIW 211
Query: 525 LVGNPWKCDC-NIADMWEWATREKG 548
L+ NPW C C +I + W ++ G
Sbjct: 212 LLNNPWDCACSDILYLSRWISQHPG 236
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 70/129 (54%), Gaps = 2/129 (1%)
Query: 44 YLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYI 103
YL ++ +L + F LT+L +L L GN L+ + GVF+ LTSL YL L+ L +
Sbjct: 32 YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91
Query: 104 SPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTW 163
FD L LK L L+ N+L+S D V L +L L L Q+ + ++PD VF T
Sbjct: 92 PNGVFDKLTQLKELALNTNQLQSLPDG--VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 149
Query: 164 LRNLNLAEN 172
L+ + L +N
Sbjct: 150 LQYIWLHDN 158
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 49/96 (51%)
Query: 34 GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYL 93
G F SL LY+ L + F LT+L L+LS N L+ + GVFD LT L+ L
Sbjct: 46 GVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL 105
Query: 94 MLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHID 129
LN L + FD L LK L L QN+LKS D
Sbjct: 106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD 141
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 54/112 (48%)
Query: 243 LSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRIS 302
L L L LP F T L +L + N L + + L SL +L++ + LQ +
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 303 RSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVF 354
F K+T LK L L+ N+L++L G+F LT L L L L + + VF
Sbjct: 93 NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVF 144
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 290 HLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRL 349
+LD+ ++L+ + F ++TSL L L GNKL++L +G+F LT L+ L L+ L L
Sbjct: 32 YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91
Query: 350 NETVFHENYTYPDLEELRLSGNPLHVLPDS 379
VF + L+EL L+ N L LPD
Sbjct: 92 PNGVFDK---LTQLKELALNTNQLQSLPDG 118
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 54/107 (50%)
Query: 237 LTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYS 296
LT L +L L L LP F++ T L L++S N L + L L+ L + +
Sbjct: 51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN 110
Query: 297 NLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNN 343
LQ + F K+T LK L L N+L+++ G+F LT L + L++
Sbjct: 111 QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD 157
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 63/156 (40%), Gaps = 29/156 (18%)
Query: 69 LDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHI 128
LDL N L+ + GVFD LTSL L L L + F+ L L L LS N+L+S
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS-- 90
Query: 129 DWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLV 188
LP+ VF T L+ L L N+L L + L
Sbjct: 91 ------------------------LPNGVFDKLTQLKELALNTNQLQSL--PDGVFDKLT 124
Query: 189 HLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNP 224
L L L LK + + F T L+ ++L NP
Sbjct: 125 QLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNP 159
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 49/105 (46%), Gaps = 1/105 (0%)
Query: 19 LITINLNANPIQPV-EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLR 77
L + L N +Q + G F SL YL + L + F LT L +L L+ N L+
Sbjct: 54 LTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ 113
Query: 78 IIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQN 122
+ GVFD LT L+ L L + L + FD L L+ + L N
Sbjct: 114 SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 82/263 (31%), Gaps = 90/263 (34%)
Query: 315 LILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLH 374
L L N L++L +G+F LT L+ L L L L VF++ L L LS N L
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNK---LTSLTYLNLSTNQLQ 89
Query: 375 VLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPT 434
LP+ FD L L+EL L+ N L LP
Sbjct: 90 SLPNGV---------------FDKLT-----------------QLKELALNTNQLQSLPD 117
Query: 435 GNXXXXXXXXXXXXXXXXCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFXXXXX 494
G VF+ + L L N L
Sbjct: 118 G--------------------------VFDKLTQLKDLRLYQNQLK-------------- 137
Query: 495 XXXXXXXXXXXXTHISPTVLRHNRAITSIKLVGNPWKCDC-NIADMWEWATREKGDIGVL 553
+ V ++ I L NPW C C I + EW + G +
Sbjct: 138 -------------SVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNS 184
Query: 554 VGSTTPTEIGF-GASRKKKGLVC 575
GS P G+ + + ++C
Sbjct: 185 AGSVAPDSAKCSGSGKPVRSIIC 207
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 76/157 (48%), Gaps = 17/157 (10%)
Query: 4 GHPVYNDRRNLDNPGLITI--------------NLNANPIQPVE-GAFLVARSLLYLYMQ 48
G P ++ +L + GL T+ NL+ N +Q + G F L L +
Sbjct: 32 GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91
Query: 49 ECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAF 108
L+ + F +LT L+KL L GN L+ + GVFD LT L+ L LN L I AF
Sbjct: 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAF 151
Query: 109 DNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDL 145
D L +L+TL LS N+L+S LGKL T+ L
Sbjct: 152 DKLTNLQTLSLSTNQLQSVPHG--AFDRLGKLQTITL 186
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 81/183 (44%), Gaps = 28/183 (15%)
Query: 141 DTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHL 200
+ LDL+ +G++ L D F T L LNL N+L
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ------------------------- 72
Query: 201 KGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHR 260
LS F + T+L TL L+ N L++ L V LT+L +L L L LP+ F R
Sbjct: 73 --TLSAGVFDDLTELGTLGLANNQLASLPLGV-FDHLTQLDKLYLGGNQLKSLPSGVFDR 129
Query: 261 FTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGN 320
T L+EL ++ N L L +L+ L + + LQ + F ++ L+T+ L GN
Sbjct: 130 LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
Query: 321 KLE 323
+ +
Sbjct: 190 QFD 192
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 71/151 (47%), Gaps = 2/151 (1%)
Query: 191 DSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGL 250
+ LDL + L LS+ F TKL L L N L V LT+L L L N L
Sbjct: 38 EKLDLQSTGL-ATLSDATFRGLTKLTWLNLDYNQLQTLSAGV-FDDLTELGTLGLANNQL 95
Query: 251 SRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMT 310
+ LP F T L +L + N L + + L L+ L + + LQ I F K+T
Sbjct: 96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT 155
Query: 311 SLKTLILSGNKLETLESGLFQNLTHLSVLEL 341
+L+TL LS N+L+++ G F L L + L
Sbjct: 156 NLQTLSLSTNQLQSVPHGAFDRLGKLQTITL 186
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 77/164 (46%), Gaps = 11/164 (6%)
Query: 68 KLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSH 127
KLDL L + F LT L +L L+ L +S FD+L L TL L+ N+L S
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS- 97
Query: 128 IDWTLVLG---NLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLG 184
L LG +L +LD L L + + +LP VF T L+ L L N+L +
Sbjct: 98 ----LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAF-- 151
Query: 185 QNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAA 228
L +L +L LS L+ + AF KL+T+ L GN +
Sbjct: 152 DKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQFDCS 194
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 62/147 (42%), Gaps = 35/147 (23%)
Query: 289 EHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTR 348
E LD+ + L +S +TF +T L L L N+L+TL +G+F +LT L L L N L
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 349 LNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNET 408
L VF L++L L GN L LP FD L
Sbjct: 98 LPLGVFDH---LTQLDKLYLGGNQLKSLPSGV---------------FDRLT-------- 131
Query: 409 VFHENYTYPDLEELRLSGNPLHVLPTG 435
L+ELRL+ N L +P G
Sbjct: 132 ---------KLKELRLNTNQLQSIPAG 149
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 55/118 (46%), Gaps = 4/118 (3%)
Query: 7 VYNDRRNLDNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTL 66
V++D L GL L + P+ G F L LY+ L + F LT L
Sbjct: 78 VFDDLTELGTLGLANNQLASLPL----GVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL 133
Query: 67 NKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKL 124
+L L+ N L+ I G FD LT+L+ L L+ L + AFD L L+T+ L N+
Sbjct: 134 KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 76/157 (48%), Gaps = 17/157 (10%)
Query: 4 GHPVYNDRRNLDNPGLITI--------------NLNANPIQPVE-GAFLVARSLLYLYMQ 48
G P ++ +L + GL T+ NL+ N +Q + G F L L +
Sbjct: 32 GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91
Query: 49 ECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAF 108
L+ + F +LT L+KL L GN L+ + GVFD LT L+ L LN L I AF
Sbjct: 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAF 151
Query: 109 DNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDL 145
D L +L+TL LS N+L+S LGKL T+ L
Sbjct: 152 DKLTNLQTLSLSTNQLQSVPHG--AFDRLGKLQTITL 186
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 92/203 (45%), Gaps = 6/203 (2%)
Query: 191 DSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGL 250
+ LDL + L LS+ F TKL L L N L V LT+L L L N L
Sbjct: 38 EKLDLQSTGL-ATLSDATFRGLTKLTWLNLDYNQLQTLSAGV-FDDLTELGTLGLANNQL 95
Query: 251 SRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMT 310
+ LP F T L +L + N L + + L L+ L + + LQ I F K+T
Sbjct: 96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT 155
Query: 311 SLKTLILSGNKLETLESGLFQNLTHLSVLEL--NNCGLTRLNETVFHENYTYPDLEELR- 367
+L+TL LS N+L+++ G F L L + L N +R ET++ + + +++
Sbjct: 156 NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRC-ETLYLSQWIRENSNKVKD 214
Query: 368 LSGNPLHVLPDSTKQYSMRTIPT 390
+G LH PD + + T
Sbjct: 215 GTGQNLHESPDGVTCSDGKVVRT 237
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 81/183 (44%), Gaps = 28/183 (15%)
Query: 141 DTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHL 200
+ LDL+ +G++ L D F T L LNL N+L
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ------------------------- 72
Query: 201 KGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHR 260
LS F + T+L TL L+ N L++ L V LT+L +L L L LP+ F R
Sbjct: 73 --TLSAGVFDDLTELGTLGLANNQLASLPLGV-FDHLTQLDKLYLGGNQLKSLPSGVFDR 129
Query: 261 FTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGN 320
T L+EL ++ N L L +L+ L + + LQ + F ++ L+T+ L GN
Sbjct: 130 LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
Query: 321 KLE 323
+ +
Sbjct: 190 QFD 192
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 77/164 (46%), Gaps = 11/164 (6%)
Query: 68 KLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSH 127
KLDL L + F LT L +L L+ L +S FD+L L TL L+ N+L S
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS- 97
Query: 128 IDWTLVLG---NLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLG 184
L LG +L +LD L L + + +LP VF T L+ L L N+L +
Sbjct: 98 ----LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAF-- 151
Query: 185 QNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAA 228
L +L +L LS L+ + AF KL+T+ L GN +
Sbjct: 152 DKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQFDCS 194
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 62/147 (42%), Gaps = 35/147 (23%)
Query: 289 EHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTR 348
E LD+ + L +S +TF +T L L L N+L+TL +G+F +LT L L L N L
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 349 LNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNET 408
L VF L++L L GN L LP FD L
Sbjct: 98 LPLGVFDH---LTQLDKLYLGGNQLKSLPSGV---------------FDRLT-------- 131
Query: 409 VFHENYTYPDLEELRLSGNPLHVLPTG 435
L+ELRL+ N L +P G
Sbjct: 132 ---------KLKELRLNTNQLQSIPAG 149
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 58/128 (45%), Gaps = 4/128 (3%)
Query: 7 VYNDRRNLDNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTL 66
V++D L GL L + P+ G F L LY+ L + F LT L
Sbjct: 78 VFDDLTELGTLGLANNQLASLPL----GVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL 133
Query: 67 NKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKS 126
+L L+ N L+ I G FD LT+L+ L L+ L + AFD L L+T+ L N+
Sbjct: 134 KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193
Query: 127 HIDWTLVL 134
TL L
Sbjct: 194 SRCETLYL 201
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 95/319 (29%), Positives = 141/319 (44%), Gaps = 50/319 (15%)
Query: 64 TTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQN- 122
T L +LDLS N L + G F L SL YL L N+ +SP +F L++L+ L L +
Sbjct: 248 TNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAF 307
Query: 123 -----KLKSH--IDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAE---- 171
L SH ID L L+ L++ + I + N F L+ L+L++
Sbjct: 308 TKQSVSLASHPNID-DFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTS 366
Query: 172 -----NE-LIDLDVATTLGQNLV----------------HLDSLDLSNCHLKGPLSEDAF 209
NE + L + L NL L LDL ++ LS +
Sbjct: 367 LQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEW 426
Query: 210 VNATKLRTLYLSGNP-LSAADLSVALKPLTK---LHRLSLRNCGLSRLPANTFHRFTCLQ 265
+ +YLS N L + S AL P + L R++L+N +S P F L
Sbjct: 427 RGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSP---FRPLRNLT 483
Query: 266 ELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRST-------FLK-MTSLKTLIL 317
LD+S+N + + LL LE+LE LD ++NL R+ + FLK ++ L L L
Sbjct: 484 ILDLSNNNIANINEDLLEGLENLEILDFQHNNLARLWKRANPGGPVNFLKGLSHLHILNL 543
Query: 318 SGNKLETLESGLFQNLTHL 336
N L+ + G+F+NL L
Sbjct: 544 ESNGLDEIPVGVFKNLFEL 562
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 85/286 (29%), Positives = 122/286 (42%), Gaps = 36/286 (12%)
Query: 61 TNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELS 120
+N+T LN L+ N LR + P F + L L +++ + P L LK L L
Sbjct: 25 SNITVLN---LTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQ 81
Query: 121 QNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVA 180
N+L D T V L LDL + I + N F N L L+L+ N L +
Sbjct: 82 HNELSQISDQTFVFCT--NLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLG 139
Query: 181 TTL----------GQNLV--------------HLDSLDLSNCHLKGPLSEDAFVNATKLR 216
T + +N + L LDLS+ LK S F KL
Sbjct: 140 TGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLK-EFSPGCFQTIGKLF 198
Query: 217 TLYLSG---NPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFH--RFTCLQELDISH 271
L L+ NP L L T + LSL N L +TF ++T L +LD+S+
Sbjct: 199 ALLLNNAQLNPHLTEKLCWELSN-TSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSY 257
Query: 272 NPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLIL 317
N L D S L SL +L + Y+N+QR+S +F +++L+ L L
Sbjct: 258 NNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSL 303
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 108/363 (29%), Positives = 167/363 (46%), Gaps = 37/363 (10%)
Query: 17 PGLITINLNANPIQPV-EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP 75
P L +NL N + + + F+ +L L + ++ KI F N L KLDLS N
Sbjct: 73 PLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNG 132
Query: 76 LRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNH--LKTLELSQNKLKSHIDWTLV 133
L + G L +L+ L+L + + + + L + L+ L+LS N LK
Sbjct: 133 LSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPG--C 190
Query: 134 LGNLGKLDTLDLRQSGIS-NLPDNVF--ANNTWLRNLNLAENELIDLDVATTLGQNLVHL 190
+GKL L L + ++ +L + + +NT ++NL+LA N+L+ +T G +L
Sbjct: 191 FQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNL 250
Query: 191 DSLDLS--NCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNC 248
LDLS N H G +F LR L L N + RLS R+
Sbjct: 251 TQLDLSYNNLHDVG---NGSFSYLPSLRYLSLEYN---------------NIQRLSPRSF 292
Query: 249 -GLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFL 307
GLS L + R Q + ++ +P ID F+ L+ LE+L+M +N+ +TF
Sbjct: 293 YGLSNLRYLSLKRAFTKQSVSLASHPNIDDFS--FQWLKYLEYLNMDDNNIPSTKSNTFT 350
Query: 308 KMTSLKTLILSG--NKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEE 365
+ SLK L LS L+TL + F +L H +L LN LT+ N N T+ L +
Sbjct: 351 GLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLN---LTK-NHISKIANGTFSWLGQ 406
Query: 366 LRL 368
LR+
Sbjct: 407 LRI 409
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 56/105 (53%)
Query: 243 LSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRIS 302
L+L + L RLP F R++ L LD N + L L L+ L++ ++ L +IS
Sbjct: 30 LNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQIS 89
Query: 303 RSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLT 347
TF+ T+L L L N + ++S F+N +L L+L++ GL+
Sbjct: 90 DQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLS 134
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 78/172 (45%), Gaps = 11/172 (6%)
Query: 215 LRTLYLSGNPLSA-ADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNP 273
L+ L L N LS +D + T L L L + + ++ +N F L +LD+SHN
Sbjct: 75 LKVLNLQHNELSQISDQTFVF--CTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNG 132
Query: 274 LIDAFTALLSPLESLEHLDMGYSNLQ----RISRSTFLKMTSLKTLILSGNKLETLESGL 329
L + T L + ++ ++ + + R FL +SL+ L LS N L+ G
Sbjct: 133 L--SSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGC 190
Query: 330 FQNLTHLSVLELNNCGLT-RLNETVFHENYTYPDLEELRLSGNPLHVLPDST 380
FQ + L L LNN L L E + E + ++ L L+ N L +ST
Sbjct: 191 FQTIGKLFALLLNNAQLNPHLTEKLCWE-LSNTSIQNLSLANNQLLATSEST 241
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 59 FFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLE 118
F L+ L+ L+L N L I GVF L L+ + L NL + P FD+ L++L
Sbjct: 531 FLKGLSHLHILNLESNGLDEIPVGVFKNLFELKSINLGLNNLNKLEPFIFDDQTSLRSLN 590
Query: 119 LSQNKLKSHIDWTLVLGNLGKLDTLDLR 146
L +N + S ++ + L++LD+R
Sbjct: 591 LQKNLITS-VEKDVFGPPFQNLNSLDMR 617
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 80/289 (27%), Positives = 122/289 (42%), Gaps = 36/289 (12%)
Query: 37 LVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGV------------- 83
L S+ L +QE S I+ F T L +LDL+ L+ + G+
Sbjct: 248 LCEMSVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKGLPSGMKGLNLLKKLVLSV 307
Query: 84 --FDPLT--------SLEYLMLNRCNLT--YISPSAFDNLNHLKTLELSQNKLKSHIDWT 131
FD L SL +L + R N+ ++ + L +L+TL+LS N +++ +
Sbjct: 308 NHFDQLCQISAANFPSLTHLYI-RGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCS 366
Query: 132 LVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLD 191
L L NL L TL+L + L F L L+LA L ++ + QNL L
Sbjct: 367 LQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRL-HINAPQSPFQNLHFLQ 425
Query: 192 SLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVA--LKPLTKLHRLSLRNCG 249
L+L+ C L ++ LR L L GN ++ L+ + L L L +CG
Sbjct: 426 VLNLTYCFLDTS-NQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCG 484
Query: 250 LSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNL 298
L + FH + +D+SHN L ++SL HL Y NL
Sbjct: 485 LLSIDQQAFHSLGKMSHVDLSHNSLT------CDSIDSLSHLKGIYLNL 527
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 129/561 (22%), Positives = 214/561 (38%), Gaps = 75/561 (13%)
Query: 42 LLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLT 101
L +L + C ++ I+ F + L+ L L+GNPL + + SL++L L + ++
Sbjct: 56 LTFLDLTRCQINWIHEDTFQSHHQLSTLVLTGNPLIFMAETSLNGPKSLKHLFLIQTGIS 115
Query: 102 YISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANN 161
+ NL +L++L L N + S I + L LD + + I + +
Sbjct: 116 NLEFIPVHNLENLESLYLGSNHISS-IKFPKDFP-ARNLKVLDFQNNAIH------YISR 167
Query: 162 TWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNA---TKLRTL 218
+R+L A N ++ + G L DS + + G + N + ++L
Sbjct: 168 EDMRSLEQAINLSLNFNGNNVKGIELGAFDSTIFQSLNFGGTPNLSVIFNGLQNSTTQSL 227
Query: 219 YLSG-NPLSAADLSVA-LKPLTKL--HRLSLRNCGLSRLPANTFHRFTCLQELDISHNPL 274
+L + D+S A LK L ++ L+L+ S + + TF FT LQELD++ L
Sbjct: 228 WLGTFEDIDDEDISSAMLKGLCEMSVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHL 287
Query: 275 ------IDAFTALLSPLESLEHLDMGYSNLQRISRSTF---------------------- 306
+ L + S+ H D L +IS + F
Sbjct: 288 KGLPSGMKGLNLLKKLVLSVNHFDQ----LCQISAANFPSLTHLYIRGNVKKLHLGVGCL 343
Query: 307 LKMTSLKTLILSGNKLETLESGLFQ--NLTHLSVLELNNCGLTRLNETVFHENYTYPDLE 364
K+ +L+TL LS N +E + Q NL+HL L L++ L F E P LE
Sbjct: 344 EKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKE---CPQLE 400
Query: 365 ELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVIL----FILNETVFHENYTYPDLE 420
L L+ LH+ P ++N FL +L L+ + H P L
Sbjct: 401 LLDLAFTRLHI-----------NAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLR 449
Query: 421 ELRLSGNPLH-VLPTGNXXXXXXXXXXXXXXXXCKIDYLPPNVFNNTRNITSLNLANNNL 479
L L GN T C + + F++ ++ ++L++N+L
Sbjct: 450 HLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSL 509
Query: 480 SMTSELSFQFXXXXXXXXXXXXXXXXXTHISPTVLRHNRAITSIKLVGNPWKCDCNIADM 539
+ S S ISP +L ++I L NP C C+
Sbjct: 510 TCDSIDSLSHLKGIYLNLAANSINI----ISPRLLPILSQQSTINLSHNPLDCTCSNIHF 565
Query: 540 WEWATREKGDIGVLVGSTTPT 560
W K ++ L GS T
Sbjct: 566 LTWY---KENLHKLEGSEETT 583
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 108/231 (46%), Gaps = 9/231 (3%)
Query: 44 YLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYI 103
YL + E + I F +L L L L N +R IE G F+ L SL L L LT I
Sbjct: 79 YLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI 138
Query: 104 SPSAFDNLNHLKTLELSQNKLKSHIDWTL-VLGNLGKLDTLDLRQSGISNLPDNVFANNT 162
AF+ L+ L+ L L N ++S + + +L +LD +L++ + + + F
Sbjct: 139 PSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKK--LEYISEGAFEGLF 196
Query: 163 WLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSG 222
L+ LNL + D+ T LV L+ L++S H + +F + L+ L++
Sbjct: 197 NLKYLNLGMCNIKDMPNLTP----LVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMN 251
Query: 223 NPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNP 273
+ +S + + A L L L+L + LS LP + F L EL + HNP
Sbjct: 252 SQVSLIERN-AFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 109/249 (43%), Gaps = 33/249 (13%)
Query: 147 QSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSE 206
+ G+S +P + +N R LNL EN I + A T ++L HL+ L L ++ +
Sbjct: 63 RRGLSEVPQGIPSNT---RYLNLMENN-IQMIQADTF-RHLHHLEVLQLGRNSIR-QIEV 116
Query: 207 DAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQE 266
AF L TL L N L+ S A + L+KL L LRN + +P+ F+R L
Sbjct: 117 GAFNGLASLNTLELFDNWLTVIP-SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMR 175
Query: 267 LDISHNPLID-----AFTAL------------------LSPLESLEHLDMGYSNLQRISR 303
LD+ ++ AF L L+PL LE L+M ++ I
Sbjct: 176 LDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRP 235
Query: 304 STFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDL 363
+F ++SLK L + +++ +E F L L L L + L+ L +F L
Sbjct: 236 GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLF---TPLRYL 292
Query: 364 EELRLSGNP 372
EL L NP
Sbjct: 293 VELHLHHNP 301
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 70/277 (25%), Positives = 107/277 (38%), Gaps = 58/277 (20%)
Query: 290 HLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRL 349
+L++ +N+Q I TF + L+ L L N + +E G F L L+ LEL + LT +
Sbjct: 79 YLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI 138
Query: 350 NETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETV 409
F L EL L NP+ +P Y+ +P+ + + L L ++E
Sbjct: 139 PSGAFE---YLSKLRELWLRNNPIESIPS----YAFNRVPSLMRLDLGELKKLEYISEGA 191
Query: 410 FHE--NYTYPDL-----------------EELRLSGNPLHVLPTGNXXXXXXXXXXXXXX 450
F N Y +L EEL +SGN + G+
Sbjct: 192 FEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251
Query: 451 XXCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFXXXXXXXXXXXXXXXXXTHIS 510
++ + N F+ ++ LNLA+NNLS F
Sbjct: 252 S--QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLF----------------------- 286
Query: 511 PTVLRHNRAITSIKLVGNPWKCDCNIADMW-EWATRE 546
T LR+ + + L NPW CDC+I +W W RE
Sbjct: 287 -TPLRY---LVELHLHHNPWNCDCDI--LWLAWWLRE 317
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 105/252 (41%), Gaps = 31/252 (12%)
Query: 92 YLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGIS 151
YL L N+ I F +L+HL+ L+L +N ++ I+ L L+TL+L + ++
Sbjct: 79 YLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIE-VGAFNGLASLNTLELFDNWLT 136
Query: 152 NLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVN 211
+P F + LR L L N + + + + L LDL +SE AF
Sbjct: 137 VIPSGAFEYLSKLRELWLRNNPI--ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF-- 192
Query: 212 ATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISH 271
+ L L L+L C + +P T L+EL++S
Sbjct: 193 -----------------------EGLFNLKYLNLGMCNIKDMPNLT--PLVGLEELEMSG 227
Query: 272 NPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQ 331
N + L SL+ L + S + I R+ F + SL L L+ N L +L LF
Sbjct: 228 NHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFT 287
Query: 332 NLTHLSVLELNN 343
L +L L L++
Sbjct: 288 PLRYLVELHLHH 299
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 75/181 (41%), Gaps = 22/181 (12%)
Query: 19 LITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLR 77
L + L N I+ +E GAF SL L + + L+ I F L+ L +L L NP+
Sbjct: 101 LEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE 160
Query: 78 IIEPGVFDPLTSLEYLMLNRC-NLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLG- 135
I F+ + SL L L L YIS AF+ L +LK L L +K + T ++G
Sbjct: 161 SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGL 220
Query: 136 -------------------NLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELID 176
L L L + S +S + N F L LNLA N L
Sbjct: 221 EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS 280
Query: 177 L 177
L
Sbjct: 281 L 281
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 126/477 (26%), Positives = 188/477 (39%), Gaps = 132/477 (27%)
Query: 19 LITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKIN--------------------- 56
L T+ L NPIQ + GAF SL L E L+ +
Sbjct: 78 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137
Query: 57 ----PQFFTNLTTLNKLDLSGN----------------------------PLRIIEPGVF 84
P++F+NLT L LDLS N P+ I+PG F
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197
Query: 85 DPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLG---NLGKLD 141
+ + + N FD+LN +KT L+ H LVLG N G L+
Sbjct: 198 KEIRLHKLTLRNN----------FDSLNVMKTCIQGLAGLEVH---RLVLGEFRNEGNLE 244
Query: 142 TLDLRQ-SGISNLPDNVFANNTWLRNLNLAENELIDL-DVATTLGQ-NLVHL-------- 190
D G+ NL F L L+ +++IDL + T + +LV +
Sbjct: 245 KFDKSALEGLCNLTIEEFR----LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF 300
Query: 191 ------DSLDLSNCHLKGPLSEDAFVNATKLR-TLYLSGNPLSAADL-SVALKPLTKLHR 242
L+L NC G + +L T GN S DL S+ L++ +
Sbjct: 301 SYNFGWQHLELVNCKF-GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSR-NG 358
Query: 243 LSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRIS 302
LS + C S+ T T L+ LD+S N +I + L LE LEHLD +SNL+++S
Sbjct: 359 LSFKGC-CSQSDFGT----TSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMS 412
Query: 303 R-STFLK------------------------MTSLKTLILSGNKL-ETLESGLFQNLTHL 336
S FL ++SL+ L ++GN E +F L +L
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472
Query: 337 SVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIW 393
+ L+L+ C L +L+ T F+ + L+ L ++ N L +PD + T +IW
Sbjct: 473 TFLDLSQCQLEQLSPTAFN---SLSSLQVLNMASNQLKSVPDGI--FDRLTSLQKIW 524
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 92/192 (47%), Gaps = 28/192 (14%)
Query: 69 LDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHI 128
LDLS NPLR + F L+ L L+RC + I A+ +L+HL TL L+ N ++S
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-- 90
Query: 129 DWTLVLG---NLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQ 185
L LG L L L ++ +++L + + L+ LN+A N + +
Sbjct: 91 ---LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS- 146
Query: 186 NLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPL-------- 237
NL +L+ LDLS+ ++ + T LR L+ PL L ++L P+
Sbjct: 147 NLTNLEHLDLSSNKIQS-------IYCTDLRVLH--QMPLLNLSLDLSLNPMNFIQPGAF 197
Query: 238 --TKLHRLSLRN 247
+LH+L+LRN
Sbjct: 198 KEIRLHKLTLRN 209
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 66/133 (49%), Gaps = 2/133 (1%)
Query: 22 INLNANPIQPVEG-AFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIE 80
++L+ NP++ + +F L L + C + I + +L+ L+ L L+GNP++ +
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 81 PGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKL 140
G F L+SL+ L+ NL + +L LK L ++ N ++S NL L
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS-FKLPEYFSNLTNL 151
Query: 141 DTLDLRQSGISNL 153
+ LDL + I ++
Sbjct: 152 EHLDLSSNKIQSI 164
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 40/61 (65%)
Query: 36 FLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLML 95
F R+L +L + +C L +++P F +L++L L+++ N L+ + G+FD LTSL+ + L
Sbjct: 466 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWL 525
Query: 96 N 96
+
Sbjct: 526 H 526
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%)
Query: 265 QELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLET 324
+ LD+S NPL + L+ LD+ +Q I + ++ L TLIL+GN +++
Sbjct: 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90
Query: 325 LESGLFQNLTHLSVL 339
L G F L+ L L
Sbjct: 91 LALGAFSGLSSLQKL 105
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 35/55 (63%)
Query: 287 SLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLEL 341
S ++LD+ ++ L+ + +F L+ L LS +++T+E G +Q+L+HLS L L
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 31/66 (46%)
Query: 57 PQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKT 116
P FT L L LDLS L + P F+ L+SL+ L + L + FD L L+
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQK 522
Query: 117 LELSQN 122
+ L N
Sbjct: 523 IWLHTN 528
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 2/129 (1%)
Query: 216 RTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLI 275
+ L LS NPL S + +L L L C + + + + L L ++ NP+
Sbjct: 31 KNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 276 DAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLE-SGLFQNLT 334
S L SL+ L +NL + + +LK L ++ N +++ + F NLT
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149
Query: 335 HLSVLELNN 343
+L L+L++
Sbjct: 150 NLEHLDLSS 158
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 107/399 (26%), Positives = 172/399 (43%), Gaps = 74/399 (18%)
Query: 37 LVARSLLYLYMQECTLSKI-----NPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLE 91
LV L Y Y+Q T++ + NPQ NL+ LD+S NP+ I+ F + E
Sbjct: 155 LVHVDLSYNYIQTITVNDLQFLRENPQ--VNLS----LDMSLNPIDFIQDQAFQGIKLHE 208
Query: 92 YLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTL----VLGNLGKLDTLDLRQ 147
+ N + I + NL L L + K + + ++ L + + R
Sbjct: 209 LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268
Query: 148 SGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLD---------SLDLSNC 198
+ ++ D++ + L ++ + G ++ +L+ SL + C
Sbjct: 269 TYTNDFSDDIVKFHC-----------LANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRC 317
Query: 199 HLKG-PLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKL----HRLSLRNC-GLSR 252
LK P + F L++L L+ N S + VAL L+ L + LS C S
Sbjct: 318 QLKQFPTLDLPF-----LKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSD 372
Query: 253 LPANT-----------------FHRFTCLQELDISHNPL--IDAFTALLSPLESLEHLDM 293
L N+ F LQ LD H+ L + F+A LS LE L +LD+
Sbjct: 373 LGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLS-LEKLLYLDI 431
Query: 294 GYSNLQRISRSTFLKMTSLKTLILSGNKLE--TLESGLFQNLTHLSVLELNNCGLTRLNE 351
Y+N + FL +TSL TL ++GN + TL S +F N T+L+ L+L+ C L +++
Sbjct: 432 SYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL-SNVFANTTNLTFLDLSKCQLEQISW 490
Query: 352 TVFHENYTYPDLEELRLSGNPLHVLPDS--TKQYSMRTI 388
VF T L+ L +S N L L S + YS+ T+
Sbjct: 491 GVFD---TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTL 526
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 83/190 (43%), Gaps = 26/190 (13%)
Query: 69 LDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHI 128
+DLS NPL+I++ F + L++L L+RC + I A+ L+HL L L+ N ++S
Sbjct: 37 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 96
Query: 129 DWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQ--N 186
+ L L+ L ++ +++L L+ LN+A N + + N
Sbjct: 97 PGS--FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTN 154
Query: 187 LVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPL--------- 237
LVH+D LS + T +L NP L ++L P+
Sbjct: 155 LVHVD------------LSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQ 202
Query: 238 -TKLHRLSLR 246
KLH L+LR
Sbjct: 203 GIKLHELTLR 212
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 95/223 (42%), Gaps = 30/223 (13%)
Query: 22 INLNANPIQPVEG-AFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIE 80
I+L+ NP++ ++ +F L +L + C + I + + L L+ L L+GNP++
Sbjct: 37 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 96
Query: 81 PGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKL 140
PG F LTSLE L+ L + L LK L ++ N + S NL L
Sbjct: 97 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS-CKLPAYFSNLTNL 155
Query: 141 DTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHL 200
+DL + I + N + +LR EN ++L SLD+S
Sbjct: 156 VHVDLSYNYIQTITVN---DLQFLR-----ENPQVNL--------------SLDMS---- 189
Query: 201 KGPLS--EDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLH 241
P+ +D KL L L GN S+ + L+ L LH
Sbjct: 190 LNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLH 232
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 9/99 (9%)
Query: 33 EGAFLVARSLLYLYM-----QECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPL 87
+G FL SL L M ++ TLS + F N T L LDLS L I GVFD L
Sbjct: 441 DGIFLGLTSLNTLKMAGNSFKDNTLSNV----FANTTNLTFLDLSKCQLEQISWGVFDTL 496
Query: 88 TSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKS 126
L+ L ++ NL ++ S ++ L L TL+ S N++++
Sbjct: 497 HRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET 535
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 93/217 (42%), Gaps = 33/217 (15%)
Query: 86 PLTSLEYLMLNRCNLTYISPSAFDNL--NHLKTLELSQNKLKSHIDWTLVLGNLGKLDTL 143
L SL YL L+R L++ ++ +L N L+ L+LS N I + L +L L
Sbjct: 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN---GAIIMSANFMGLEELQHL 404
Query: 144 DLRQSGISNLPD-NVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKG 202
D + S + + + + F L+ +L+ LD++ T + D +
Sbjct: 405 DFQHSTLKRVTEFSAF----------LSLEKLLYLDISYT--NTKIDFDGI--------- 443
Query: 203 PLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFT 262
F+ T L TL ++GN LS T L L L C L ++ F
Sbjct: 444 ------FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH 497
Query: 263 CLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQ 299
LQ L++SHN L+ ++ + L SL LD ++ ++
Sbjct: 498 RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 84/286 (29%), Positives = 129/286 (45%), Gaps = 35/286 (12%)
Query: 60 FTNLTTLNKLDLSGNPLRIIE--PGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTL 117
F L ++ + L+G ++ +E P F + L + RC L P+ +L LK+L
Sbjct: 281 FHCLANVSAMSLAGVSIKYLEDVPKHF----KWQSLSIIRCQLKQF-PTL--DLPFLKSL 333
Query: 118 ELSQNKLKSHIDWTLVLGNLGKLDTLDLRQ-----SGISNLPDNVFANNTWLRNLNLAEN 172
L+ NK I + V L L LDL + SG + D N+ LR+L+L+ N
Sbjct: 334 TLTMNK--GSISFKKVA--LPSLSYLDLSRNALSFSGCCSYSD--LGTNS-LRHLDLSFN 386
Query: 173 ELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSV 232
I + A +G L L LD + LK AF++ KL L +S + D
Sbjct: 387 GAIIMS-ANFMG--LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN-TKIDFDG 442
Query: 233 ALKPLTKLHRL-----SLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLES 287
LT L+ L S ++ LS + ANT T L LD+S L + L
Sbjct: 443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANT----TNLTFLDLSKCQLEQISWGVFDTLHR 498
Query: 288 LEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNL 333
L+ L+M ++NL + S + ++ SL TL S N++ET G+ Q+
Sbjct: 499 LQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET-SKGILQHF 543
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%)
Query: 265 QELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLET 324
+ +D+S NPL + S L+ LD+ ++ I + + L LIL+GN +++
Sbjct: 35 KNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS 94
Query: 325 LESGLFQNLTHL 336
G F LT L
Sbjct: 95 FSPGSFSGLTSL 106
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 73/170 (42%), Gaps = 5/170 (2%)
Query: 216 RTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLI 275
+ + LS NPL S + ++L L L C + + +H L L ++ NP+
Sbjct: 35 KNIDLSFNPLKILK-SYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93
Query: 276 DAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLE-SGLFQNLT 334
S L SLE+L + L + ++ +LK L ++ N + + + F NLT
Sbjct: 94 SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT 153
Query: 335 HLSVLEL--NNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQ 382
+L ++L N +N+ F +L L +S NP+ + D Q
Sbjct: 154 NLVHVDLSYNYIQTITVNDLQFLRENPQVNL-SLDMSLNPIDFIQDQAFQ 202
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 107/399 (26%), Positives = 172/399 (43%), Gaps = 74/399 (18%)
Query: 37 LVARSLLYLYMQECTLSKI-----NPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLE 91
LV L Y Y+Q T++ + NPQ NL+ LD+S NP+ I+ F + E
Sbjct: 150 LVHVDLSYNYIQTITVNDLQFLRENPQ--VNLS----LDMSLNPIDFIQDQAFQGIKLHE 203
Query: 92 YLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTL----VLGNLGKLDTLDLRQ 147
+ N + I + NL L L + K + + ++ L + + R
Sbjct: 204 LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 263
Query: 148 SGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLD---------SLDLSNC 198
+ ++ D++ + L ++ + G ++ +L+ SL + C
Sbjct: 264 TYTNDFSDDIVKFHC-----------LANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRC 312
Query: 199 HLKG-PLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKL----HRLSLRNC-GLSR 252
LK P + F L++L L+ N S + VAL L+ L + LS C S
Sbjct: 313 QLKQFPTLDLPF-----LKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSD 367
Query: 253 LPANT-----------------FHRFTCLQELDISHNPL--IDAFTALLSPLESLEHLDM 293
L N+ F LQ LD H+ L + F+A LS LE L +LD+
Sbjct: 368 LGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLS-LEKLLYLDI 426
Query: 294 GYSNLQRISRSTFLKMTSLKTLILSGNKLE--TLESGLFQNLTHLSVLELNNCGLTRLNE 351
Y+N + FL +TSL TL ++GN + TL S +F N T+L+ L+L+ C L +++
Sbjct: 427 SYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL-SNVFANTTNLTFLDLSKCQLEQISW 485
Query: 352 TVFHENYTYPDLEELRLSGNPLHVLPDS--TKQYSMRTI 388
VF T L+ L +S N L L S + YS+ T+
Sbjct: 486 GVFD---TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTL 521
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 83/190 (43%), Gaps = 26/190 (13%)
Query: 69 LDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHI 128
+DLS NPL+I++ F + L++L L+RC + I A+ L+HL L L+ N ++S
Sbjct: 32 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 91
Query: 129 DWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQ--N 186
+ L L+ L ++ +++L L+ LN+A N + + N
Sbjct: 92 PGS--FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTN 149
Query: 187 LVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPL--------- 237
LVH+D LS + T +L NP L ++L P+
Sbjct: 150 LVHVD------------LSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQ 197
Query: 238 -TKLHRLSLR 246
KLH L+LR
Sbjct: 198 GIKLHELTLR 207
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 95/223 (42%), Gaps = 30/223 (13%)
Query: 22 INLNANPIQPVEG-AFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIE 80
I+L+ NP++ ++ +F L +L + C + I + + L L+ L L+GNP++
Sbjct: 32 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 91
Query: 81 PGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKL 140
PG F LTSLE L+ L + L LK L ++ N + S NL L
Sbjct: 92 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS-CKLPAYFSNLTNL 150
Query: 141 DTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHL 200
+DL + I + N + +LR EN ++L SLD+S
Sbjct: 151 VHVDLSYNYIQTITVN---DLQFLR-----ENPQVNL--------------SLDMS---- 184
Query: 201 KGPLS--EDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLH 241
P+ +D KL L L GN S+ + L+ L LH
Sbjct: 185 LNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLH 227
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 9/99 (9%)
Query: 33 EGAFLVARSLLYLYM-----QECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPL 87
+G FL SL L M ++ TLS + F N T L LDLS L I GVFD L
Sbjct: 436 DGIFLGLTSLNTLKMAGNSFKDNTLSNV----FANTTNLTFLDLSKCQLEQISWGVFDTL 491
Query: 88 TSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKS 126
L+ L ++ NL ++ S ++ L L TL+ S N++++
Sbjct: 492 HRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET 530
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 93/217 (42%), Gaps = 33/217 (15%)
Query: 86 PLTSLEYLMLNRCNLTYISPSAFDNL--NHLKTLELSQNKLKSHIDWTLVLGNLGKLDTL 143
L SL YL L+R L++ ++ +L N L+ L+LS N I + L +L L
Sbjct: 343 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN---GAIIMSANFMGLEELQHL 399
Query: 144 DLRQSGISNLPD-NVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKG 202
D + S + + + + F L+ +L+ LD++ T + D +
Sbjct: 400 DFQHSTLKRVTEFSAF----------LSLEKLLYLDISYT--NTKIDFDGI--------- 438
Query: 203 PLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFT 262
F+ T L TL ++GN LS T L L L C L ++ F
Sbjct: 439 ------FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH 492
Query: 263 CLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQ 299
LQ L++SHN L+ ++ + L SL LD ++ ++
Sbjct: 493 RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 529
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 84/286 (29%), Positives = 129/286 (45%), Gaps = 35/286 (12%)
Query: 60 FTNLTTLNKLDLSGNPLRIIE--PGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTL 117
F L ++ + L+G ++ +E P F + L + RC L P+ +L LK+L
Sbjct: 276 FHCLANVSAMSLAGVSIKYLEDVPKHF----KWQSLSIIRCQLKQF-PTL--DLPFLKSL 328
Query: 118 ELSQNKLKSHIDWTLVLGNLGKLDTLDLRQ-----SGISNLPDNVFANNTWLRNLNLAEN 172
L+ NK I + V L L LDL + SG + D N+ LR+L+L+ N
Sbjct: 329 TLTMNK--GSISFKKVA--LPSLSYLDLSRNALSFSGCCSYSD--LGTNS-LRHLDLSFN 381
Query: 173 ELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSV 232
I + A +G L L LD + LK AF++ KL L +S + D
Sbjct: 382 GAIIMS-ANFMG--LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN-TKIDFDG 437
Query: 233 ALKPLTKLHRL-----SLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLES 287
LT L+ L S ++ LS + ANT T L LD+S L + L
Sbjct: 438 IFLGLTSLNTLKMAGNSFKDNTLSNVFANT----TNLTFLDLSKCQLEQISWGVFDTLHR 493
Query: 288 LEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNL 333
L+ L+M ++NL + S + ++ SL TL S N++ET G+ Q+
Sbjct: 494 LQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET-SKGILQHF 538
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%)
Query: 265 QELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLET 324
+ +D+S NPL + S L+ LD+ ++ I + + L LIL+GN +++
Sbjct: 30 KNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS 89
Query: 325 LESGLFQNLTHL 336
G F LT L
Sbjct: 90 FSPGSFSGLTSL 101
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 73/170 (42%), Gaps = 5/170 (2%)
Query: 216 RTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLI 275
+ + LS NPL S + ++L L L C + + +H L L ++ NP+
Sbjct: 30 KNIDLSFNPLKILK-SYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 88
Query: 276 DAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLE-SGLFQNLT 334
S L SLE+L + L + ++ +LK L ++ N + + + F NLT
Sbjct: 89 SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT 148
Query: 335 HLSVLEL--NNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQ 382
+L ++L N +N+ F +L L +S NP+ + D Q
Sbjct: 149 NLVHVDLSYNYIQTITVNDLQFLRENPQVNL-SLDMSLNPIDFIQDQAFQ 197
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 101/218 (46%), Gaps = 28/218 (12%)
Query: 69 LDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHI 128
LDLS NPLR + F L+ L L+RC + I A+ +L+HL TL L+ N ++S
Sbjct: 34 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-- 91
Query: 129 DWTLVLG---NLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQ 185
L LG L L L ++ +++L + + L+ LN+A N + +
Sbjct: 92 ---LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS- 147
Query: 186 NLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPL-------- 237
NL +L+ LDLS+ ++ + T LR L+ PL L ++L P+
Sbjct: 148 NLTNLEHLDLSSNKIQS-------IYCTDLRVLH--QMPLLNLSLDLSLNPMNFIQPGAF 198
Query: 238 --TKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNP 273
+L L+L L +P F R T LQ++ + NP
Sbjct: 199 KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 236
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 104/232 (44%), Gaps = 43/232 (18%)
Query: 153 LPDNV-FANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVN 211
+PDN+ F+ +NL+L+ N L L + + L LDLS C ++ + + A+ +
Sbjct: 23 IPDNLPFST----KNLDLSWNPLRHLGSYSFF--SFPELQVLDLSRCEIQT-IEDGAYQS 75
Query: 212 ATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISH 271
+ L TL L+GNP+ + L A L+ L +L L+ L L+EL+++H
Sbjct: 76 LSHLSTLILTGNPIQSLALG-AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 134
Query: 272 NPLIDAFT--ALLSPLESLEHLDMGYSNLQRISRSTF----------------------- 306
N LI +F S L +LEHLD+ + +Q I +
Sbjct: 135 N-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 193
Query: 307 ----LKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELN----NCGLTRLN 350
K LK L L N+L+++ G+F LT L + L+ +C R++
Sbjct: 194 QPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 245
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 66/133 (49%), Gaps = 2/133 (1%)
Query: 22 INLNANPIQPVEG-AFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIE 80
++L+ NP++ + +F L L + C + I + +L+ L+ L L+GNP++ +
Sbjct: 34 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 93
Query: 81 PGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKL 140
G F L+SL+ L+ NL + +L LK L ++ N ++S NL L
Sbjct: 94 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS-FKLPEYFSNLTNL 152
Query: 141 DTLDLRQSGISNL 153
+ LDL + I ++
Sbjct: 153 EHLDLSSNKIQSI 165
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 28/203 (13%)
Query: 216 RTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLI 275
+ L LS NPL S + +L L L C + + + + L L ++ NP+
Sbjct: 32 KNLDLSWNPLRHLG-SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 90
Query: 276 DAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLE-SGLFQNLT 334
S L SL+ L +NL + + +LK L ++ N +++ + F NLT
Sbjct: 91 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 150
Query: 335 HLSVLELNNCGLTRLNET---VFHE---------------NYTYPD------LEELRLSG 370
+L L+L++ + + T V H+ N+ P L+EL L
Sbjct: 151 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDT 210
Query: 371 NPLHVLPDSTKQYSMRTIPTQIW 393
N L +PD + T +IW
Sbjct: 211 NQLKSVPDGI--FDRLTSLQKIW 231
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 101/218 (46%), Gaps = 28/218 (12%)
Query: 69 LDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHI 128
LDLS NPLR + F L+ L L+RC + I A+ +L+HL TL L+ N ++S
Sbjct: 35 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-- 92
Query: 129 DWTLVLG---NLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQ 185
L LG L L L ++ +++L + + L+ LN+A N + +
Sbjct: 93 ---LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS- 148
Query: 186 NLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPL-------- 237
NL +L+ LDLS+ ++ + T LR L+ PL L ++L P+
Sbjct: 149 NLTNLEHLDLSSNKIQS-------IYCTDLRVLH--QMPLLNLSLDLSLNPMNFIQPGAF 199
Query: 238 --TKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNP 273
+L L+L L +P F R T LQ++ + NP
Sbjct: 200 KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 237
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 104/232 (44%), Gaps = 43/232 (18%)
Query: 153 LPDNV-FANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVN 211
+PDN+ F+ +NL+L+ N L L + + L LDLS C ++ + + A+ +
Sbjct: 24 IPDNLPFST----KNLDLSWNPLRHLGSYSFF--SFPELQVLDLSRCEIQT-IEDGAYQS 76
Query: 212 ATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISH 271
+ L TL L+GNP+ + L A L+ L +L L+ L L+EL+++H
Sbjct: 77 LSHLSTLILTGNPIQSLALG-AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 135
Query: 272 NPLIDAFT--ALLSPLESLEHLDMGYSNLQRISRSTF----------------------- 306
N LI +F S L +LEHLD+ + +Q I +
Sbjct: 136 N-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 194
Query: 307 ----LKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELN----NCGLTRLN 350
K LK L L N+L+++ G+F LT L + L+ +C R++
Sbjct: 195 QPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 246
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 66/133 (49%), Gaps = 2/133 (1%)
Query: 22 INLNANPIQPVEG-AFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIE 80
++L+ NP++ + +F L L + C + I + +L+ L+ L L+GNP++ +
Sbjct: 35 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 81 PGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKL 140
G F L+SL+ L+ NL + +L LK L ++ N ++S NL L
Sbjct: 95 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS-FKLPEYFSNLTNL 153
Query: 141 DTLDLRQSGISNL 153
+ LDL + I ++
Sbjct: 154 EHLDLSSNKIQSI 166
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 28/203 (13%)
Query: 216 RTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLI 275
+ L LS NPL S + +L L L C + + + + L L ++ NP+
Sbjct: 33 KNLDLSWNPLRHLG-SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 91
Query: 276 DAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLE-SGLFQNLT 334
S L SL+ L +NL + + +LK L ++ N +++ + F NLT
Sbjct: 92 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 151
Query: 335 HLSVLELNNCGLTRLNET---VFHE---------------NYTYPD------LEELRLSG 370
+L L+L++ + + T V H+ N+ P L+EL L
Sbjct: 152 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDT 211
Query: 371 NPLHVLPDSTKQYSMRTIPTQIW 393
N L +PD + T +IW
Sbjct: 212 NQLKSVPDGI--FDRLTSLQKIW 232
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 113/480 (23%), Positives = 191/480 (39%), Gaps = 72/480 (15%)
Query: 55 INPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLT--YISPSAFDNLN 112
I+ + F NL L LDL + + + P F L L L L C L+ + F NL
Sbjct: 64 IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123
Query: 113 HLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFA--NNTWLRNLNLA 170
L L+LS+N+++S + G L L ++D + I + ++ L +LA
Sbjct: 124 ALTRLDLSKNQIRS-LYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182
Query: 171 ENEL---IDLDVATTLG--QNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPL 225
N L + +D + +N+V L+ LD+S T+ ++GN
Sbjct: 183 ANSLYSRVSVDWGKCMNPFRNMV-LEILDVSG----------------NGWTVDITGNFS 225
Query: 226 SAADLSVALKPLTKLHRLSLRNCGLSRLP---ANTFHRF--TCLQELDISHNPLIDAFTA 280
+A S A L H + G + NTF + ++ LD+SH + +
Sbjct: 226 NAISKSQAFS-LILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR 284
Query: 281 LLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLE 340
+ L+ L+ L++ Y+ + +I+ F + +L+ L LS N L L S F L ++ ++
Sbjct: 285 VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344
Query: 341 LNNCGLTRLNETVF-----------HEN-----YTYPDLEELRLSGNPLHVLPDSTKQYS 384
L + + + F +N + P + ++ LSGN L LP +
Sbjct: 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTAN 404
Query: 385 MRTIPTQIWKNFDFLVIL--------FILNETVF---------HENYTYPDLEELRLSGN 427
+ + +N D L L ILN+ F EN P LE+L L N
Sbjct: 405 LIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSEN---PSLEQLFLGEN 461
Query: 428 PLHVLPTGNXXXXXXXXXXXXXXXXCKIDY---LPPNVFNNTRNITSLNLANNNLSMTSE 484
L + +Y LPP VF++ + L+L +N L++ S
Sbjct: 462 MLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSH 521
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 86/326 (26%), Positives = 132/326 (40%), Gaps = 69/326 (21%)
Query: 64 TTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNK 123
+++ LDLS + + VF+ L L+ L L + I+ AF L++L+ L LS N
Sbjct: 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL 325
Query: 124 LKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTL 183
L ++ L K+ +DL+++ I+ + D F L+ L+L +N L +
Sbjct: 326 LGEL--YSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFI--- 380
Query: 184 GQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTL----------YLSGNPLSAADLSVA 233
P D F++ KL TL +LS N L D+
Sbjct: 381 -------------------PSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYF 421
Query: 234 LKPLTKLHRLSLRNCGLSRLPANTFHRFT-CLQELDISHNPLIDAFTALLSPLESLEHLD 292
L + L L L +RF+ C + S NP SLE L
Sbjct: 422 LLRVPHLQILILNQ-----------NRFSSCSGDQTPSENP-------------SLEQLF 457
Query: 293 MGYSNLQ-----RISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLT 347
+G + LQ + F ++ L+ L L+ N L +L G+F +LT L L LN+ L
Sbjct: 458 LGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL- 516
Query: 348 RLNETVFHENYTYPDLEELRLSGNPL 373
TV N +LE L +S N L
Sbjct: 517 ----TVLSHNDLPANLEILDISRNQL 538
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 100/216 (46%), Gaps = 24/216 (11%)
Query: 69 LDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKS-H 127
LDLS NPLR + F L+ L L+RC + I A+ +L+HL TL L+ N ++S
Sbjct: 35 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 128 IDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNL 187
+ L +L KL L+ + + N P + L+ LN+A N + + NL
Sbjct: 95 LGAFSGLSSLQKLVALETNLASLENFP---IGHLKTLKELNVAHNLIQSFKLPEYFS-NL 150
Query: 188 VHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPL---------- 237
+L+ LDLS+ ++ + T LR L+ PL L ++L P+
Sbjct: 151 TNLEHLDLSSNKIQS-------IYCTDLRVLH--QMPLLNLSLDLSLNPMNFIQPGAFKE 201
Query: 238 TKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNP 273
+L L+L L +P F R T LQ++ + NP
Sbjct: 202 IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 237
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 104/232 (44%), Gaps = 43/232 (18%)
Query: 153 LPDNV-FANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVN 211
+PDN+ F+ +NL+L+ N L L + + L LDLS C ++ + + A+ +
Sbjct: 24 IPDNLPFST----KNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQT-IEDGAYQS 76
Query: 212 ATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISH 271
+ L TL L+GNP+ + L A L+ L +L L+ L L+EL+++H
Sbjct: 77 LSHLSTLILTGNPIQSLALG-AFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAH 135
Query: 272 NPLIDAFT--ALLSPLESLEHLDMGYSNLQRISRSTF----------------------- 306
N LI +F S L +LEHLD+ + +Q I +
Sbjct: 136 N-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 194
Query: 307 ----LKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELN----NCGLTRLN 350
K LK L L N+L+++ G+F LT L + L+ +C R++
Sbjct: 195 QPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 246
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 66/133 (49%), Gaps = 2/133 (1%)
Query: 22 INLNANPIQPVEG-AFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIE 80
++L+ NP++ + +F L L + C + I + +L+ L+ L L+GNP++ +
Sbjct: 35 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 81 PGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKL 140
G F L+SL+ L+ NL + +L LK L ++ N ++S NL L
Sbjct: 95 LGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQS-FKLPEYFSNLTNL 153
Query: 141 DTLDLRQSGISNL 153
+ LDL + I ++
Sbjct: 154 EHLDLSSNKIQSI 166
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 28/203 (13%)
Query: 216 RTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLI 275
+ L LS NPL S + +L L L C + + + + L L ++ NP+
Sbjct: 33 KNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 91
Query: 276 DAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLE-SGLFQNLT 334
S L SL+ L +NL + + +LK L ++ N +++ + F NLT
Sbjct: 92 SLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 151
Query: 335 HLSVLELNNCGLTRLNET---VFHE---------------NYTYPD------LEELRLSG 370
+L L+L++ + + T V H+ N+ P L+EL L
Sbjct: 152 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDT 211
Query: 371 NPLHVLPDSTKQYSMRTIPTQIW 393
N L +PD + T +IW
Sbjct: 212 NQLKSVPDGI--FDRLTSLQKIW 232
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 101/218 (46%), Gaps = 28/218 (12%)
Query: 69 LDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHI 128
LDLS NPLR + F L+ L L+RC + I A+ +L+HL TL L+ N ++S
Sbjct: 34 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-- 91
Query: 129 DWTLVLG---NLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQ 185
L LG L L L ++ +++L + + L+ LN+A N + +
Sbjct: 92 ---LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS- 147
Query: 186 NLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPL-------- 237
NL +L+ LDLS+ ++ + T LR L+ PL L ++L P+
Sbjct: 148 NLTNLEHLDLSSNKIQS-------IYCTDLRVLH--QMPLLNLSLDLSLNPMNFIQPGAF 198
Query: 238 --TKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNP 273
+L L+L L +P F R T LQ++ + NP
Sbjct: 199 KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 236
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 104/232 (44%), Gaps = 43/232 (18%)
Query: 153 LPDNV-FANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVN 211
+PDN+ F+ +NL+L+ N L L + + L LDLS C ++ + + A+ +
Sbjct: 23 IPDNLPFST----KNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQT-IEDGAYQS 75
Query: 212 ATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISH 271
+ L TL L+GNP+ + L A L+ L +L L+ L L+EL+++H
Sbjct: 76 LSHLSTLILTGNPIQSLALG-AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 134
Query: 272 NPLIDAFT--ALLSPLESLEHLDMGYSNLQRISRSTF----------------------- 306
N LI +F S L +LEHLD+ + +Q I +
Sbjct: 135 N-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 193
Query: 307 ----LKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELN----NCGLTRLN 350
K LK L L N+L+++ G+F LT L + L+ +C R++
Sbjct: 194 QPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 245
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 66/133 (49%), Gaps = 2/133 (1%)
Query: 22 INLNANPIQPVEG-AFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIE 80
++L+ NP++ + +F L L + C + I + +L+ L+ L L+GNP++ +
Sbjct: 34 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 93
Query: 81 PGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKL 140
G F L+SL+ L+ NL + +L LK L ++ N ++S NL L
Sbjct: 94 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS-FKLPEYFSNLTNL 152
Query: 141 DTLDLRQSGISNL 153
+ LDL + I ++
Sbjct: 153 EHLDLSSNKIQSI 165
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 28/203 (13%)
Query: 216 RTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLI 275
+ L LS NPL S + +L L L C + + + + L L ++ NP+
Sbjct: 32 KNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 90
Query: 276 DAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLE-SGLFQNLT 334
S L SL+ L +NL + + +LK L ++ N +++ + F NLT
Sbjct: 91 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 150
Query: 335 HLSVLELNNCGLTRLNET---VFHE---------------NYTYPD------LEELRLSG 370
+L L+L++ + + T V H+ N+ P L+EL L
Sbjct: 151 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDT 210
Query: 371 NPLHVLPDSTKQYSMRTIPTQIW 393
N L +PD + T +IW
Sbjct: 211 NQLKSVPDGI--FDRLTSLQKIW 231
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 21 TINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIE 80
T++ + + V +LYLY + ++K+ P F LT L +LDL N L ++
Sbjct: 21 TVDCSGKSLASVPTGIPTTTQVLYLYDNQ--ITKLEPGVFDRLTQLTRLDLDNNQLTVLP 78
Query: 81 PGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQN 122
GVFD LT L L LN L I AFDNL L + L N
Sbjct: 79 AGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 120
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 34/63 (53%)
Query: 64 TTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNK 123
TT L L N + +EPGVFD LT L L L+ LT + FD L L L L+ N+
Sbjct: 38 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 97
Query: 124 LKS 126
LKS
Sbjct: 98 LKS 100
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 310 TSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLS 369
T+ + L L N++ LE G+F LT L+ L+L+N LT L VF + L +L L+
Sbjct: 38 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDK---LTQLTQLSLN 94
Query: 370 GNPLHVLP 377
N L +P
Sbjct: 95 DNQLKSIP 102
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 8/98 (8%)
Query: 213 TKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHN 272
T + LYL N ++ + V LT+L RL L N L+ LPA F + T L +L ++ N
Sbjct: 38 TTTQVLYLYDNQITKLEPGV-FDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 96
Query: 273 PLIDAFTALLSPLESLEHL-------DMGYSNLQRISR 303
L L+SL H+ D S++ +SR
Sbjct: 97 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSR 134
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%)
Query: 297 NLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVF 354
+ ++ F ++T L L L N+L L +G+F LT L+ L LN+ L + F
Sbjct: 49 QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAF 106
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 285 LESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNN 343
L L LD+ + L + F K+T L L L+ N+L+++ G F NL L+ + L N
Sbjct: 61 LTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLN 119
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 101/218 (46%), Gaps = 28/218 (12%)
Query: 69 LDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHI 128
LDLS NPLR + F L+ L L+RC + I A+ +L+HL TL L+ N ++S
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-- 90
Query: 129 DWTLVLG---NLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQ 185
L LG L L L ++ +++L + + L+ LN+A N + +
Sbjct: 91 ---LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS- 146
Query: 186 NLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPL-------- 237
NL +L+ LDLS+ ++ + T LR L+ PL L ++L P+
Sbjct: 147 NLTNLEHLDLSSNKIQS-------IYCTDLRVLH--QMPLLNLSLDLSLNPMNFIQPGAF 197
Query: 238 --TKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNP 273
+L L+L L +P F R T LQ++ + NP
Sbjct: 198 KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 104/232 (44%), Gaps = 43/232 (18%)
Query: 153 LPDNV-FANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVN 211
+PDN+ F+ +NL+L+ N L L + + L LDLS C ++ + + A+ +
Sbjct: 22 IPDNLPFST----KNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQT-IEDGAYQS 74
Query: 212 ATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISH 271
+ L TL L+GNP+ + L A L+ L +L L+ L L+EL+++H
Sbjct: 75 LSHLSTLILTGNPIQSLALG-AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133
Query: 272 NPLIDAFT--ALLSPLESLEHLDMGYSNLQRISRSTF----------------------- 306
N LI +F S L +LEHLD+ + +Q I +
Sbjct: 134 N-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192
Query: 307 ----LKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELN----NCGLTRLN 350
K LK L L N+L+++ G+F LT L + L+ +C R++
Sbjct: 193 QPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 244
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 66/133 (49%), Gaps = 2/133 (1%)
Query: 22 INLNANPIQPVEG-AFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIE 80
++L+ NP++ + +F L L + C + I + +L+ L+ L L+GNP++ +
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 81 PGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKL 140
G F L+SL+ L+ NL + +L LK L ++ N ++S NL L
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS-FKLPEYFSNLTNL 151
Query: 141 DTLDLRQSGISNL 153
+ LDL + I ++
Sbjct: 152 EHLDLSSNKIQSI 164
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 28/203 (13%)
Query: 216 RTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLI 275
+ L LS NPL S + +L L L C + + + + L L ++ NP+
Sbjct: 31 KNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 276 DAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLE-SGLFQNLT 334
S L SL+ L +NL + + +LK L ++ N +++ + F NLT
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149
Query: 335 HLSVLELNNCGLTRLNET---VFHE---------------NYTYPD------LEELRLSG 370
+L L+L++ + + T V H+ N+ P L+EL L
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDT 209
Query: 371 NPLHVLPDSTKQYSMRTIPTQIW 393
N L +PD + T +IW
Sbjct: 210 NQLKSVPDGI--FDRLTSLQKIW 230
>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
Length = 457
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 110/400 (27%), Positives = 160/400 (40%), Gaps = 59/400 (14%)
Query: 16 NPGLITINLNANPIQPVEGAFLVARSLL-------YLYMQECTLSKIN----PQFFTNLT 64
NP L + L N + G LV + L L +Q C+L++ P +L
Sbjct: 51 NPSLTELCLRTNELGDA-GVHLVLQGLQSPTCKIQKLSLQNCSLTEAGCGVLPSTLRSLP 109
Query: 65 TLNKLDLSGNPL-----RIIEPGVFDPLTSLEYLMLNRCNLTYIS----PSAFDNLNHLK 115
TL +L LS NPL R++ G+ DP LE L L C LT S S LK
Sbjct: 110 TLRELHLSDNPLGDAGLRLLCEGLLDPQCHLEKLQLEYCRLTAASCEPLASVLRATRALK 169
Query: 116 TLELSQNKLKSHIDWTLVLG---NLGKLDTLDLRQSGI--SNLPD--NVFANNTWLRNLN 168
L +S N + L G + +L+TL L G+ +N D + A+ LR L+
Sbjct: 170 ELTVSNNDIGEAGARVLGQGLADSACQLETLRLENCGLTPANCKDLCGIVASQASLRELD 229
Query: 169 LAENELIDLDVAT---TLGQNLVHLDSLDLSNCHLKGPLSED---AFVNATKLRTLYLSG 222
L N L D +A L L +L L C + D L+ L L+G
Sbjct: 230 LGSNGLGDAGIAELCPGLLSPASRLKTLWLWECDITASGCRDLCRVLQAKETLKELSLAG 289
Query: 223 NPLS--AADLSVA--LKPLTKLHRLSLRNCGLSRLPANTFHRFTC----LQELDISHNPL 274
N L A L L+P +L L +++C L+ L EL +S N L
Sbjct: 290 NKLGDEGARLLCESLLQPGCQLESLWVKSCSLTAACCQHVSLMLTQNKHLLELQLSSNKL 349
Query: 275 IDA-----FTALLSPLESLEHLDMGYSNLQRISRSTFLKM----TSLKTLILSGNKLETL 325
D+ AL P +L L +G + S+ + SL+ L LS N +
Sbjct: 350 GDSGIQELCQALSQPGTTLRVLCLGDCEVTNSGCSSLASLLLANRSLRELDLSNNCVG-- 407
Query: 326 ESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEE 365
+ G+ Q L LE C L +L V ++ Y ++E+
Sbjct: 408 DPGVLQ---LLGSLEQPGCALEQL---VLYDTYWTEEVED 441
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 21 TINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIE 80
T++ + + V +LYLY + ++K+ P F LT L +LDL N L ++
Sbjct: 13 TVDCSGKSLASVPTGIPTTTQVLYLYDNQ--ITKLEPGVFDRLTQLTRLDLDNNQLTVLP 70
Query: 81 PGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQN 122
GVFD LT L L LN L I AFDNL L + L N
Sbjct: 71 AGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 34/63 (53%)
Query: 64 TTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNK 123
TT L L N + +EPGVFD LT L L L+ LT + FD L L L L+ N+
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 124 LKS 126
LKS
Sbjct: 90 LKS 92
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 310 TSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLS 369
T+ + L L N++ LE G+F LT L+ L+L+N LT L VF + L +L L+
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDK---LTQLTQLSLN 86
Query: 370 GNPLHVLP 377
N L +P
Sbjct: 87 DNQLKSIP 94
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 8/98 (8%)
Query: 213 TKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHN 272
T + LYL N ++ + V LT+L RL L N L+ LPA F + T L +L ++ N
Sbjct: 30 TTTQVLYLYDNQITKLEPGV-FDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88
Query: 273 PLIDAFTALLSPLESLEHL-------DMGYSNLQRISR 303
L L+SL H+ D S++ +SR
Sbjct: 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSR 126
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 295 YSN-LQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETV 353
Y N + ++ F ++T L L L N+L L +G+F LT L+ L LN+ L +
Sbjct: 38 YDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGA 97
Query: 354 F 354
F
Sbjct: 98 F 98
Score = 32.3 bits (72), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 285 LESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNN 343
L L LD+ + L + F K+T L L L+ N+L+++ G F NL L+ + L N
Sbjct: 53 LTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLN 111
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Query: 21 TINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIE 80
T++ + + V +LYLY ++K+ P F LT L +LDL N L ++
Sbjct: 13 TVDCSGKSLASVPTGIPTTTQVLYLYDNR--ITKLEPGVFDRLTQLTRLDLDNNQLTVLP 70
Query: 81 PGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQN 122
GVFD LT L L LN L I AFDNL L + L N
Sbjct: 71 AGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNN 112
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 34/63 (53%)
Query: 64 TTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNK 123
TT L L N + +EPGVFD LT L L L+ LT + FD L L L L+ N+
Sbjct: 30 TTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 124 LKS 126
LKS
Sbjct: 90 LKS 92
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 310 TSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLS 369
T+ + L L N++ LE G+F LT L+ L+L+N LT L VF + L +L L+
Sbjct: 30 TTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDK---LTQLTQLSLN 86
Query: 370 GNPLHVLP 377
N L +P
Sbjct: 87 DNQLKSIP 94
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Query: 213 TKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHN 272
T + LYL N ++ + V LT+L RL L N L+ LPA F + T L +L ++ N
Sbjct: 30 TTTQVLYLYDNRITKLEPGV-FDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88
Query: 273 PLIDAFTALLSPLESLEHL-------DMGYSNLQRISR 303
L L SL H+ D S++ +SR
Sbjct: 89 QLKSIPRGAFDNLRSLTHIWLLNNPWDCACSDILYLSR 126
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 295 YSN-LQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETV 353
Y N + ++ F ++T L L L N+L L +G+F LT L+ L LN+ L +
Sbjct: 38 YDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGA 97
Query: 354 F 354
F
Sbjct: 98 F 98
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 285 LESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNN 343
L L LD+ + L + F K+T L L L+ N+L+++ G F NL L+ + L N
Sbjct: 53 LTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLN 111
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 80/294 (27%), Positives = 129/294 (43%), Gaps = 43/294 (14%)
Query: 65 TLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFD-NLNHLKTLELSQNK 123
TL + +L G ++ F PLTSLE L+L N+ I P++F N+ L+L+ NK
Sbjct: 109 TLTQCNLDG---AVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK 165
Query: 124 LKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTL 183
+KS + L L GK TL LR S I+ L D N WL N + + T
Sbjct: 166 VKSICEEDL-LNFQGKHFTL-LRLSSIT-LQD---MNEYWL-GWEKCGNPFKNTSITT-- 216
Query: 184 GQNLVHLDSLDLSNCHLKGPLSEDAF--VNATKLRTLYLSGN-PLSAADLSVALKPLTKL 240
LDLS K +++ F + TK+++L LS + + ++ K
Sbjct: 217 ---------LDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267
Query: 241 HRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQR 300
L G+ TC D+S + + ++ S LE L + + + +
Sbjct: 268 TFKGLEASGVK----------TC----DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK 313
Query: 301 ISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELN----NCGLTRLN 350
I + F +T LK L L N+L+++ G+F LT L + L+ +C R++
Sbjct: 314 IDDNAFWGLTHLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 367
>pdb|3TSR|E Chain E, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|F Chain F, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|G Chain G, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|H Chain H, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
Length = 457
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 89/212 (41%), Gaps = 27/212 (12%)
Query: 186 NLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALK----PLTKLH 241
+V LD L+ K S A L L L N L + + L+ P K+
Sbjct: 27 EVVRLDDCGLTEVRCKDISS--AVQANPALTELSLRTNELGDGGVGLVLQGLQNPTCKIQ 84
Query: 242 RLSLRNCGLSR-----LPANTFHRFTCLQELDISHNPLIDAFTALLS-----PLESLEHL 291
+LSL+NCGL+ LP + L+EL ++ NP+ DA LL P LE L
Sbjct: 85 KLSLQNCGLTEAGCGILPG-MLRSLSTLRELHLNDNPMGDAGLKLLCEGLQDPQCRLEKL 143
Query: 292 DMGYSNLQRIS----RSTFLKMTSLKTLILSGNKL-----ETLESGLFQNLTHLSVLELN 342
+ Y NL S S K L+LS N L L GL + L L+L
Sbjct: 144 QLEYCNLTATSCEPLASVLRVKADFKELVLSNNDLHEPGVRILCQGLKDSACQLESLKLE 203
Query: 343 NCGLTRLN-ETVFHENYTYPDLEELRLSGNPL 373
NCG+T N + + + L+EL LS N L
Sbjct: 204 NCGITAANCKDLCDVVASKASLQELDLSSNKL 235
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 111/400 (27%), Positives = 169/400 (42%), Gaps = 59/400 (14%)
Query: 16 NPGLITINLNANPIQPVEGAFLVARSLL-------YLYMQECTLSK----INPQFFTNLT 64
NP L ++L N + G LV + L L +Q C L++ I P +L+
Sbjct: 51 NPALTELSLRTNELGD-GGVGLVLQGLQNPTCKIQKLSLQNCGLTEAGCGILPGMLRSLS 109
Query: 65 TLNKLDLSGNP-----LRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKT--- 116
TL +L L+ NP L+++ G+ DP LE L L CNLT S ++ +K
Sbjct: 110 TLRELHLNDNPMGDAGLKLLCEGLQDPQCRLEKLQLEYCNLTATSCEPLASVLRVKADFK 169
Query: 117 -LELSQNKLKSHIDWTLVLG---NLGKLDTLDLRQSGI--SNLPD--NVFANNTWLRNLN 168
L LS N L L G + +L++L L GI +N D +V A+ L+ L+
Sbjct: 170 ELVLSNNDLHEPGVRILCQGLKDSACQLESLKLENCGITAANCKDLCDVVASKASLQELD 229
Query: 169 LAENELIDLDVATTLGQNLV---HLDSLDLSNCHLKGPLSED---AFVNATKLRTLYLSG 222
L+ N+L + +A L+ L +L L C + +D L+ L L+
Sbjct: 230 LSSNKLGNAGIAALCPGLLLPSCKLRTLWLWECDITAEGCKDLCRVLRAKQSLKELSLAS 289
Query: 223 NPL--SAADLSVA--LKPLTKLHRLSLRNCGLSRLPANTFH----RFTCLQELDISHNPL 274
N L A L L+P +L L ++ C L+ F + L EL +S NPL
Sbjct: 290 NELKDEGARLLCESLLEPGCQLESLWIKTCSLTAASCPYFCSVLTKSRSLLELQMSSNPL 349
Query: 275 IDA-----FTALLSPLESLEHLDMGYSNLQRISRST----FLKMTSLKTLILSGNKLETL 325
D AL P L L +G ++ S+ L SL+ L LS N +
Sbjct: 350 GDEGVQELCKALSQPDTVLRELWLGDCDVTNSGCSSLANVLLANRSLRELDLSNNCMGG- 408
Query: 326 ESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEE 365
G+ Q L L+ +C L +L V ++ Y ++EE
Sbjct: 409 -PGVLQ---LLESLKQPSCTLQQL---VLYDIYWTNEVEE 441
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 92/352 (26%), Positives = 148/352 (42%), Gaps = 62/352 (17%)
Query: 64 TTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNK 123
T L LDLS N L ++ F L LEY L N+ ++ + L +++ L L ++
Sbjct: 248 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSF 307
Query: 124 LKSHIDWTLVLGNLGKLDT-----------LDLRQSGISNLPDNVF-------------- 158
K I L +L K+D L++ + I + N+F
Sbjct: 308 TKQSIS----LASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 363
Query: 159 -------ANNTW-------LRNLNLAENEL--IDLDVATTLGQNLVHLDSLDLSNCHLKG 202
N T+ L LNL +N++ I+ D + LG HL+ LDL +
Sbjct: 364 FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG----HLEVLDLGLNEIGQ 419
Query: 203 PLSEDAFVNATKLRTLYLSGNP-LSAADLSVALKPLTKLHRLSLRNCGLSRLPA--NTFH 259
L+ + + +YLS N L S AL P L RL LR L + + + F
Sbjct: 420 ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP--SLQRLMLRRVALKNVDSSPSPFQ 477
Query: 260 RFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRST-------FLK-MTS 311
L LD+S+N + + +L LE LE LD+ ++NL R+ + FLK ++
Sbjct: 478 PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSH 537
Query: 312 LKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDL 363
L L L N + + +F++L L +++L L L +VF+ + L
Sbjct: 538 LHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSL 589
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 133/319 (41%), Gaps = 41/319 (12%)
Query: 35 AFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGN--PLRIIEPGVFDPL--TSL 90
+F + L +L M++ + I FT L L L LS + LR + F L + L
Sbjct: 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL 383
Query: 91 EYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGI 150
L L + ++ I AF L HL+ L+L N++ + G L + + L +
Sbjct: 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG-LENIFEIYLSYNKY 442
Query: 151 SNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFV 210
L N FA L+ L L L ++D + + Q L +L LDLSN + +++D
Sbjct: 443 LQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN-NNIANINDDMLE 501
Query: 211 NATKLRTLYLSGNPLS-------AADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTC 263
KL L L N L+ LK L+ LH L+L + G +P F
Sbjct: 502 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFK---- 557
Query: 264 LQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLE 323
D F L+ +D+G +NL + S F SLK+L L N +
Sbjct: 558 ------------DLF--------ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 597
Query: 324 TLESGL----FQNLTHLSV 338
++E + F+NLT L +
Sbjct: 598 SVEKKVFGPAFRNLTELDM 616
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 58/110 (52%)
Query: 238 TKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSN 297
T + L+L + L RLPA F R++ L LD+ N + L L L+ L++ ++
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 298 LQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLT 347
L ++S TF T+L L L N ++ +++ F +L L+L++ GL+
Sbjct: 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 134
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 84/356 (23%), Positives = 148/356 (41%), Gaps = 53/356 (14%)
Query: 60 FTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLEL 119
FT + L LD+ N + +EP + L L+ L L L+ +S F +L L L
Sbjct: 45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104
Query: 120 SQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLP------------------------- 154
N ++ + V L TLDL +G+S+
Sbjct: 105 MSNSIQKIKNNPFV--KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS 162
Query: 155 --DNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNA 212
++FAN++ L+ L L+ N++ + + L L L+N L L+E +
Sbjct: 163 EELDIFANSS-LKKLELSSNQIKEFSPGCF--HAIGRLFGLFLNNVQLGPSLTEKLCLEL 219
Query: 213 --TKLRTLYLSGNPLSAADLSVALK-PLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDI 269
T +R L LS + LS + L T L L L L+ + ++F L+ +
Sbjct: 220 ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFL 279
Query: 270 SHNPLIDAFTALLSPLESLEHLDMGYS---------NLQRISRSTFLKMTSLKTLILSGN 320
+N + F+ L L ++ +L++ S +L +I +F + L+ L + N
Sbjct: 280 EYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN 339
Query: 321 KLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVL 376
+ ++S +F L +L L L+N T L T+ +E + + L+ +PLH+L
Sbjct: 340 DIPGIKSNMFTGLINLKYLSLSN-SFTSL-RTLTNETF-------VSLAHSPLHIL 386
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 92/352 (26%), Positives = 148/352 (42%), Gaps = 62/352 (17%)
Query: 64 TTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNK 123
T L LDLS N L ++ F L LEY L N+ ++ + L +++ L L ++
Sbjct: 253 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSF 312
Query: 124 LKSHIDWTLVLGNLGKLDT-----------LDLRQSGISNLPDNVF-------------- 158
K I L +L K+D L++ + I + N+F
Sbjct: 313 TKQSIS----LASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 368
Query: 159 -------ANNTW-------LRNLNLAENEL--IDLDVATTLGQNLVHLDSLDLSNCHLKG 202
N T+ L LNL +N++ I+ D + LG HL+ LDL +
Sbjct: 369 FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG----HLEVLDLGLNEIGQ 424
Query: 203 PLSEDAFVNATKLRTLYLSGNP-LSAADLSVALKPLTKLHRLSLRNCGLSRLPA--NTFH 259
L+ + + +YLS N L S AL P L RL LR L + + + F
Sbjct: 425 ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP--SLQRLMLRRVALKNVDSSPSPFQ 482
Query: 260 RFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRST-------FLK-MTS 311
L LD+S+N + + +L LE LE LD+ ++NL R+ + FLK ++
Sbjct: 483 PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSH 542
Query: 312 LKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDL 363
L L L N + + +F++L L +++L L L +VF+ + L
Sbjct: 543 LHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSL 594
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 134/319 (42%), Gaps = 41/319 (12%)
Query: 35 AFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGN--PLRIIEPGVFDPL--TSL 90
+F + L +L M++ + I FT L L L LS + LR + F L + L
Sbjct: 329 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL 388
Query: 91 EYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGI 150
L L + ++ I AF L HL+ L+L N++ + G L + + L +
Sbjct: 389 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG-LENIFEIYLSYNKY 447
Query: 151 SNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFV 210
L N FA L+ L L L ++D + + Q L +L LDLSN ++ +++D
Sbjct: 448 LQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN-INDDMLE 506
Query: 211 NATKLRTLYLSGNPLS-------AADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTC 263
KL L L N L+ LK L+ LH L+L + G +P F
Sbjct: 507 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFK---- 562
Query: 264 LQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLE 323
D F L+ +D+G +NL + S F SLK+L L N +
Sbjct: 563 ------------DLF--------ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 602
Query: 324 TLESGL----FQNLTHLSV 338
++E + F+NLT L +
Sbjct: 603 SVEKKVFGPAFRNLTELDM 621
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 58/110 (52%)
Query: 238 TKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSN 297
T + L+L + L RLPA F R++ L LD+ N + L L L+ L++ ++
Sbjct: 30 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 89
Query: 298 LQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLT 347
L ++S TF T+L L L N ++ +++ F +L L+L++ GL+
Sbjct: 90 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 139
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 84/356 (23%), Positives = 148/356 (41%), Gaps = 53/356 (14%)
Query: 60 FTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLEL 119
FT + L LD+ N + +EP + L L+ L L L+ +S F +L L L
Sbjct: 50 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 109
Query: 120 SQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLP------------------------- 154
N ++ + V L TLDL +G+S+
Sbjct: 110 MSNSIQKIKNNPFV--KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS 167
Query: 155 --DNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNA 212
++FAN++ L+ L L+ N++ + + L L L+N L L+E +
Sbjct: 168 EELDIFANSS-LKKLELSSNQIKEFSPGCF--HAIGRLFGLFLNNVQLGPSLTEKLCLEL 224
Query: 213 --TKLRTLYLSGNPLSAADLSVALK-PLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDI 269
T +R L LS + LS + L T L L L L+ + ++F L+ +
Sbjct: 225 ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFL 284
Query: 270 SHNPLIDAFTALLSPLESLEHLDMGYS---------NLQRISRSTFLKMTSLKTLILSGN 320
+N + F+ L L ++ +L++ S +L +I +F + L+ L + N
Sbjct: 285 EYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN 344
Query: 321 KLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVL 376
+ ++S +F L +L L L+N T L T+ +E + + L+ +PLH+L
Sbjct: 345 DIPGIKSNMFTGLINLKYLSLSN-SFTSL-RTLTNETF-------VSLAHSPLHIL 391
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 92/352 (26%), Positives = 148/352 (42%), Gaps = 62/352 (17%)
Query: 64 TTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNK 123
T L LDLS N L ++ F L LEY L N+ ++ + L +++ L L ++
Sbjct: 258 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSF 317
Query: 124 LKSHIDWTLVLGNLGKLDT-----------LDLRQSGISNLPDNVF-------------- 158
K I L +L K+D L++ + I + N+F
Sbjct: 318 TKQSIS----LASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 373
Query: 159 -------ANNTW-------LRNLNLAENEL--IDLDVATTLGQNLVHLDSLDLSNCHLKG 202
N T+ L LNL +N++ I+ D + LG HL+ LDL +
Sbjct: 374 FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG----HLEVLDLGLNEIGQ 429
Query: 203 PLSEDAFVNATKLRTLYLSGNP-LSAADLSVALKPLTKLHRLSLRNCGLSRLPA--NTFH 259
L+ + + +YLS N L S AL P L RL LR L + + + F
Sbjct: 430 ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP--SLQRLMLRRVALKNVDSSPSPFQ 487
Query: 260 RFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRST-------FLK-MTS 311
L LD+S+N + + +L LE LE LD+ ++NL R+ + FLK ++
Sbjct: 488 PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSH 547
Query: 312 LKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDL 363
L L L N + + +F++L L +++L L L +VF+ + L
Sbjct: 548 LHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSL 599
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 134/319 (42%), Gaps = 41/319 (12%)
Query: 35 AFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGN--PLRIIEPGVFDPL--TSL 90
+F + L +L M++ + I FT L L L LS + LR + F L + L
Sbjct: 334 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL 393
Query: 91 EYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGI 150
L L + ++ I AF L HL+ L+L N++ + G L + + L +
Sbjct: 394 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG-LENIFEIYLSYNKY 452
Query: 151 SNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFV 210
L N FA L+ L L L ++D + + Q L +L LDLSN ++ +++D
Sbjct: 453 LQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN-INDDMLE 511
Query: 211 NATKLRTLYLSGNPLS-------AADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTC 263
KL L L N L+ LK L+ LH L+L + G +P F
Sbjct: 512 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFK---- 567
Query: 264 LQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLE 323
D F L+ +D+G +NL + S F SLK+L L N +
Sbjct: 568 ------------DLF--------ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 607
Query: 324 TLESGL----FQNLTHLSV 338
++E + F+NLT L +
Sbjct: 608 SVEKKVFGPAFRNLTELDM 626
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 58/110 (52%)
Query: 238 TKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSN 297
T + L+L + L RLPA F R++ L LD+ N + L L L+ L++ ++
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 94
Query: 298 LQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLT 347
L ++S TF T+L L L N ++ +++ F +L L+L++ GL+
Sbjct: 95 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 144
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 84/356 (23%), Positives = 148/356 (41%), Gaps = 53/356 (14%)
Query: 60 FTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLEL 119
FT + L LD+ N + +EP + L L+ L L L+ +S F +L L L
Sbjct: 55 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 114
Query: 120 SQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLP------------------------- 154
N ++ + V L TLDL +G+S+
Sbjct: 115 MSNSIQKIKNNPFV--KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS 172
Query: 155 --DNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNA 212
++FAN++ L+ L L+ N++ + + L L L+N L L+E +
Sbjct: 173 EELDIFANSS-LKKLELSSNQIKEFSPGCF--HAIGRLFGLFLNNVQLGPSLTEKLCLEL 229
Query: 213 --TKLRTLYLSGNPLSAADLSVALK-PLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDI 269
T +R L LS + LS + L T L L L L+ + ++F L+ +
Sbjct: 230 ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFL 289
Query: 270 SHNPLIDAFTALLSPLESLEHLDMGYS---------NLQRISRSTFLKMTSLKTLILSGN 320
+N + F+ L L ++ +L++ S +L +I +F + L+ L + N
Sbjct: 290 EYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN 349
Query: 321 KLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVL 376
+ ++S +F L +L L L+N T L T+ +E + + L+ +PLH+L
Sbjct: 350 DIPGIKSNMFTGLINLKYLSLSN-SFTSL-RTLTNETF-------VSLAHSPLHIL 396
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 106/247 (42%), Gaps = 15/247 (6%)
Query: 57 PQFFTNLTTLNKLDLSGNP---LRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNH 113
P L+TL KL LS N L I F LT L + + +NL +
Sbjct: 294 PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS--IKGNTKRLELGTGCLENLEN 351
Query: 114 LKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENE 173
L+ L+LS + +++ L L NL L +L+L + +L F L L+LA
Sbjct: 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411
Query: 174 LIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSV- 232
L D + QNL L L+LS+ L SE F L+ L L GN ++
Sbjct: 412 LKVKDAQSPF-QNLHLLKVLNLSHSLLDIS-SEQLFDGLPALQHLNLQGNHFPKGNIQKT 469
Query: 233 -ALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHL 291
+L+ L +L L L C LS + + F + +D+SHN L S +E+L HL
Sbjct: 470 NSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS------SSIEALSHL 523
Query: 292 DMGYSNL 298
Y NL
Sbjct: 524 KGIYLNL 530
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 86/329 (26%), Positives = 131/329 (39%), Gaps = 61/329 (18%)
Query: 69 LDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHI 128
L+ S N L I+ F L +L +L L RC + +I F + + L TL L+ N L
Sbjct: 38 LEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMA 97
Query: 129 DWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLV 188
+ L L L Q+GIS++ N L +L L N + + + G
Sbjct: 98 ET--ALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK--GFPTE 153
Query: 189 HLDSLDLSNCHLKGPLSED--AFVNATKLRTLYLSGNPLSAAD----------------- 229
L LD N + ED + AT L +L L+GN ++ +
Sbjct: 154 KLKVLDFQNNAIHYLSKEDMSSLQQATNL-SLNLNGNDIAGIEPGAFDSAVFQSLNFGGT 212
Query: 230 --LSVALKPLTK--------------------------LHRLSLRNCGLSR-----LPAN 256
L V K L L +S+ + L + + +N
Sbjct: 213 QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272
Query: 257 TFHRFTCLQELDISHNPLIDAFTAL--LSPLESLEHLDMGYSNLQRISRSTFLKMTSLKT 314
TFH F+ LQELD++ L + + L LS L+ L + NL +IS S F +T L
Sbjct: 273 TFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS- 331
Query: 315 LILSGNKLETLESGLFQNLTHLSVLELNN 343
I K L +G +NL +L L+L++
Sbjct: 332 -IKGNTKRLELGTGCLENLENLRELDLSH 359
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 56/114 (49%), Gaps = 3/114 (2%)
Query: 45 LYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYIS 104
LY+ + ++K+ P F +L L +L L N L + GVFD LT L L L LT +
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLP 104
Query: 105 PSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVF 158
+ FD L HLK L + NKL + + L L L L Q+ + ++P F
Sbjct: 105 SAVFDRLVHLKELFMCCNKL---TELPRGIERLTHLTHLALDQNQLKSIPHGAF 155
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 56/122 (45%), Gaps = 7/122 (5%)
Query: 11 RRNLDNPGLITIN-----LNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLT 64
+R+ P I N L+ N I +E G F +L LY+ L + F +LT
Sbjct: 29 KRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT 88
Query: 65 TLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKL 124
L LDL N L ++ VFD L L+ L + CN P + L HL L L QN+L
Sbjct: 89 QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMC-CNKLTELPRGIERLTHLTHLALDQNQL 147
Query: 125 KS 126
KS
Sbjct: 148 KS 149
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 65/137 (47%), Gaps = 6/137 (4%)
Query: 88 TSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQ 147
T+ + L L+ +T + P FD+L +LK L L N+L + V +L +L LDL
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP--VGVFDSLTQLTVLDLGT 97
Query: 148 SGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSED 207
+ ++ LP VF L+ L + N+L +L + L HL L L LK +
Sbjct: 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGI---ERLTHLTHLALDQNQLKS-IPHG 153
Query: 208 AFVNATKLRTLYLSGNP 224
AF + L YL GNP
Sbjct: 154 AFDRLSSLTHAYLFGNP 170
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 4/135 (2%)
Query: 238 TKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSN 297
T L L + +++L F L+EL + N L + L L LD+G +
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99
Query: 298 LQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHEN 357
L + + F ++ LK L + NKL L G+ + LTHL+ L L+ L + F
Sbjct: 100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGI-ERLTHLTHLALDQNQLKSIPHGAFDR- 157
Query: 358 YTYPDLEELRLSGNP 372
L L GNP
Sbjct: 158 --LSSLTHAYLFGNP 170
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 297 NLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHE 356
+ ++ F + +LK L L N+L L G+F +LT L+VL+L LT L VF
Sbjct: 51 QITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDR 110
Query: 357 NYTYPDLEELRLSGNPLHVLP 377
L+EL + N L LP
Sbjct: 111 ---LVHLKELFMCCNKLTELP 128
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 2/125 (1%)
Query: 213 TKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHN 272
T + LYL N ++ + V L L L L + L LP F T L LD+ N
Sbjct: 40 TNAQILYLHDNQITKLEPGV-FDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98
Query: 273 PLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQN 332
L +A+ L L+ L M + L + R ++T L L L N+L+++ G F
Sbjct: 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRG-IERLTHLTHLALDQNQLKSIPHGAFDR 157
Query: 333 LTHLS 337
L+ L+
Sbjct: 158 LSSLT 162
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 49/148 (33%), Gaps = 34/148 (22%)
Query: 454 KIDYLPPNVFNNTRNITSLNLANNNLSMTSELSF-------QFXXXXXXXXXXXXXXXXX 506
++ LP VF++ +T L+L N L++ F +
Sbjct: 75 QLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERL 134
Query: 507 THISPTVLRHNR-------------AITSIKLVGNPWKCDC--------------NIADM 539
TH++ L N+ ++T L GNPW C+C +IA
Sbjct: 135 THLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDIMYLRNWVADHTSIAMR 194
Query: 540 WEWATREKGDIGVLVGSTTPTEIGFGAS 567
W+ D G+ TP AS
Sbjct: 195 WDGKAVNDPDSAKCAGTNTPVRAVTEAS 222
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 116/426 (27%), Positives = 167/426 (39%), Gaps = 110/426 (25%)
Query: 19 LITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKIN--------------------- 56
L T+ L NPIQ + GAF SL L E L+ +
Sbjct: 78 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137
Query: 57 ----PQFFTNLTTLNKLDLSGN----------------------------PLRIIEPGVF 84
P++F+NLT L LDLS N P+ I+PG F
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197
Query: 85 DPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLG---NLGKLD 141
+ + + N FD+LN +KT L+ H LVLG N G L+
Sbjct: 198 KEIRLHKLTLRNN----------FDSLNVMKTCIQGLAGLEVH---RLVLGEFRNEGNLE 244
Query: 142 TLDLRQ-SGISNLPDNVFANNTWLRNLNLAENELIDL-DVATTLGQ-NLVHL-------- 190
D G+ NL F L L+ +++IDL + T + +LV +
Sbjct: 245 KFDKSALEGLCNLTIEEFR----LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF 300
Query: 191 ------DSLDLSNCHLKGPLSEDAFVNATKLR-TLYLSGNPLSAADL-SVALKPLTKLHR 242
L+L NC G + +L T GN S DL S+ L++ +
Sbjct: 301 SYNFGWQHLELVNCKF-GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSR-NG 358
Query: 243 LSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRIS 302
LS + C S+ T T L+ LD+S N +I + L LE LEHLD +SNL+++S
Sbjct: 359 LSFKGC-CSQSDFGT----TSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMS 412
Query: 303 R-STFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYP 361
S FL + +L L +S +G+F L+ L VL ++ F EN+
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL--------KMAGNSFQENFLPD 464
Query: 362 DLEELR 367
ELR
Sbjct: 465 IFTELR 470
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 92/192 (47%), Gaps = 28/192 (14%)
Query: 69 LDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHI 128
LDLS NPLR + F L+ L L+RC + I A+ +L+HL TL L+ N ++S
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-- 90
Query: 129 DWTLVLG---NLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQ 185
L LG L L L ++ +++L + + L+ LN+A N + +
Sbjct: 91 ---LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS- 146
Query: 186 NLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPL-------- 237
NL +L+ LDLS+ ++ + T LR L+ PL L ++L P+
Sbjct: 147 NLTNLEHLDLSSNKIQS-------IYCTDLRVLH--QMPLLNLSLDLSLNPMNFIQPGAF 197
Query: 238 --TKLHRLSLRN 247
+LH+L+LRN
Sbjct: 198 KEIRLHKLTLRN 209
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 34 GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRI-IEPGVFDPLTSLEY 92
FL R+L+YL + F L++L L ++GN + P +F L +L +
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474
Query: 93 LMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKS 126
L L++C L +SP+AF++L+ L+ L +S N S
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 508
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 66/133 (49%), Gaps = 2/133 (1%)
Query: 22 INLNANPIQPVEG-AFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIE 80
++L+ NP++ + +F L L + C + I + +L+ L+ L L+GNP++ +
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 81 PGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKL 140
G F L+SL+ L+ NL + +L LK L ++ N ++S NL L
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS-FKLPEYFSNLTNL 151
Query: 141 DTLDLRQSGISNL 153
+ LDL + I ++
Sbjct: 152 EHLDLSSNKIQSI 164
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%)
Query: 265 QELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLET 324
+ LD+S NPL + L+ LD+ +Q I + ++ L TLIL+GN +++
Sbjct: 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90
Query: 325 LESGLFQNLTHLSVL 339
L G F L+ L L
Sbjct: 91 LALGAFSGLSSLQKL 105
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 86/209 (41%), Gaps = 33/209 (15%)
Query: 87 LTSLEYLMLNRCNLTY---ISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTL 143
L SLE+L L+R L++ S S F + LK L+LS N + I + L +L+ L
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTS-LKYLDLSFNGV---ITMSSNFLGLEQLEHL 401
Query: 144 DLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGP 203
D + S + + + F+ LRNL LD+S+ H +
Sbjct: 402 DFQHSNLKQMSE--FSVFLSLRNL-----------------------IYLDISHTHTRVA 436
Query: 204 LSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTC 263
+ F + L L ++GN L L L L L C L +L F+ +
Sbjct: 437 FN-GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495
Query: 264 LQELDISHNPLIDAFTALLSPLESLEHLD 292
LQ L++SHN T L SL+ LD
Sbjct: 496 LQVLNMSHNNFFSLDTFPYKCLNSLQVLD 524
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 35/55 (63%)
Query: 287 SLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLEL 341
S ++LD+ ++ L+ + +F L+ L LS +++T+E G +Q+L+HLS L L
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%)
Query: 57 PQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKT 116
P FT L L LDLS L + P F+ L+SL+ L ++ N + + LN L+
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 522
Query: 117 LELSQNKL 124
L+ S N +
Sbjct: 523 LDYSLNHI 530
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 2/129 (1%)
Query: 216 RTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLI 275
+ L LS NPL S + +L L L C + + + + L L ++ NP+
Sbjct: 31 KNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 276 DAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLE-SGLFQNLT 334
S L SL+ L +NL + + +LK L ++ N +++ + F NLT
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149
Query: 335 HLSVLELNN 343
+L L+L++
Sbjct: 150 NLEHLDLSS 158
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 129/292 (44%), Gaps = 31/292 (10%)
Query: 22 INLNANPIQPVEG-AFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIE 80
+NLN I+ ++ AF A ++ LYM + + P F N+ L L L N L +
Sbjct: 80 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 139
Query: 81 PGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLV------- 133
G+F L L ++ NL I F L+ L+LS N+L +H+D +L+
Sbjct: 140 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVDLSLIPSLFHAN 198
Query: 134 -----LGNLG---KLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQ 185
L L ++ LD + I+ + V N L L L N L D T
Sbjct: 199 VSYNLLSTLAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD----TAWLL 251
Query: 186 NLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSL 245
N L +DLS L+ + FV +L LY+S N L A L++ +P+ L L L
Sbjct: 252 NYPGLVEVDLSYNELEKIMYH-PFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDL 308
Query: 246 RNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSN 297
+ L + N +F L+ L + HN ++ T LS +L++L + +++
Sbjct: 309 SHNHLLHVERNQ-PQFDRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHND 356
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 115/275 (41%), Gaps = 43/275 (15%)
Query: 51 TLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDN 110
T+ K+ + + L+L+ + I+ F +++ L + + Y+ P F N
Sbjct: 62 TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 121
Query: 111 LNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLA 170
+ L L L +N L S + N KL TL + + + + D+ F T L+NL L+
Sbjct: 122 VPLLTVLVLERNDLSSLPRG--IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 179
Query: 171 ENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADL 230
N L +D++ L +L H + +S N LS +
Sbjct: 180 SNRLTHVDLS--LIPSLFHAN----------------------------VSYNLLSTLAI 209
Query: 231 SVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEH 290
+A++ L H + + R P N T L+ + HN L D TA L L
Sbjct: 210 PIAVEELDASHN----SINVVRGPVNV--ELTILK---LQHNNLTD--TAWLLNYPGLVE 258
Query: 291 LDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETL 325
+D+ Y+ L++I F+KM L+ L +S N+L L
Sbjct: 259 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL 293
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 67/134 (50%), Gaps = 4/134 (2%)
Query: 243 LSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRIS 302
++ +N + +LPA F ++ L+++ + + T + +++ L MG++ ++ +
Sbjct: 56 VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP 115
Query: 303 RSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPD 362
F + L L+L N L +L G+F N L+ L ++N L R+ + F +
Sbjct: 116 PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS--- 172
Query: 363 LEELRLSGNPL-HV 375
L+ L+LS N L HV
Sbjct: 173 LQNLQLSSNRLTHV 186
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 40/90 (44%)
Query: 249 GLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLK 308
+ LP + F L L + N L + L L M +NL+RI TF
Sbjct: 110 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 169
Query: 309 MTSLKTLILSGNKLETLESGLFQNLTHLSV 338
TSL+ L LS N+L ++ L +L H +V
Sbjct: 170 TTSLQNLQLSSNRLTHVDLSLIPSLFHANV 199
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 458 LPPNVFNNTRNITSLNLANNNLSMTSELSFQ 488
LP +F+NT +T+L+++NNNL + +FQ
Sbjct: 138 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 168
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 92/252 (36%), Gaps = 65/252 (25%)
Query: 298 LQRISRSTFLKMTSLKTLILSGN-KLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHE 356
L I + F +T L+ L LS N +L ++ F+ L HL L L+ CGL L +F
Sbjct: 67 LAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFR- 125
Query: 357 NYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTY 416
L+ L L N L LPD+T +++ L LF+ +
Sbjct: 126 --GLAALQYLYLQDNNLQALPDNT------------FRDLGNLTHLFLHGNRI------- 164
Query: 417 PDLEELRLSGNPLHVLPTGNXXXXXXXXXXXXXXXXCKIDYLPPNVFNNTRNITSLNLAN 476
P + E G LH L + + P+ F + + +L L
Sbjct: 165 PSVPEHAFRG--LHSL-------------DRLLLHQNHVARVHPHAFRDLGRLMTLYLFA 209
Query: 477 NNLSMTSELSFQFXXXXXXXXXXXXXXXXXTHISPTVLRHNRAITSIKLVGNPWKCDCNI 536
NNLSM + VL R++ ++L NPW CDC
Sbjct: 210 NNLSM---------------------------LPAEVLVPLRSLQYLRLNDNPWVCDCRA 242
Query: 537 ADMWEWATREKG 548
+W W + +G
Sbjct: 243 RPLWAWLQKFRG 254
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 79/179 (44%), Gaps = 28/179 (15%)
Query: 22 INLNANPIQPVEGA-FLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP-LRII 79
I L+ N I V A F R+L L++ L+ I+ FT LT L +LDLS N LR++
Sbjct: 36 IFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVV 95
Query: 80 EP------------------------GVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLK 115
+P G+F L +L+YL L NL + + F +L +L
Sbjct: 96 DPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLT 155
Query: 116 TLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENEL 174
L L N++ S + L LD L L Q+ ++ + + F + L L L N L
Sbjct: 156 HLFLHGNRIPSVPEHAFR--GLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNL 212
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 89/215 (41%), Gaps = 17/215 (7%)
Query: 67 NKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKS 126
++ L GN + + F +L L L+ L I +AF L L+ L+LS N
Sbjct: 34 QRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLR 93
Query: 127 HIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVAT--TLG 184
+D T G LG L TL L + G+ L +F L+ L L +N L L T LG
Sbjct: 94 VVDPTTFRG-LGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLG 152
Query: 185 QNLVHLDSLDLSNCHLKG----PLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKL 240
NL HL L G + E AF L L L N ++ A + L +L
Sbjct: 153 -NLTHL--------FLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVH-PHAFRDLGRL 202
Query: 241 HRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLI 275
L L LS LPA LQ L ++ NP +
Sbjct: 203 MTLYLFANNLSMLPAEVLVPLRSLQYLRLNDNPWV 237
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Query: 19 LITINLNANPIQPV-EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLR 77
L T++L+ +Q + G F +L YLY+Q+ L + F +L L L L GN +
Sbjct: 106 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIP 165
Query: 78 IIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLK 125
+ F L SL+ L+L++ ++ + P AF +L L TL L N L
Sbjct: 166 SVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS 213
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 77/171 (45%), Gaps = 5/171 (2%)
Query: 208 AFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLR-NCGLSRLPANTFHRFTCLQE 266
+F + L L+L N L+ D + A LT L +L L N L + TF L
Sbjct: 50 SFQSCRNLTILWLHSNALAGID-AAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHT 108
Query: 267 LDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLE 326
L + L + L L +L++L + +NLQ + +TF + +L L L GN++ ++
Sbjct: 109 LHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVP 168
Query: 327 SGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLP 377
F+ L L L L+ + R++ F + L L L N L +LP
Sbjct: 169 EHAFRGLHSLDRLLLHQNHVARVHPHAFRD---LGRLMTLYLFANNLSMLP 216
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 80/195 (41%), Gaps = 5/195 (2%)
Query: 150 ISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAF 209
IS +P F + L L L N L +D A G L L+ LDLS+ + F
Sbjct: 43 ISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTL--LEQLDLSDNAQLRVVDPTTF 100
Query: 210 VNATKLRTLYLSGNPLSAADLSVAL-KPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELD 268
L TL+L L +L L + L L L L++ L LP NTF L L
Sbjct: 101 RGLGHLHTLHLDRCGLQ--ELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLF 158
Query: 269 ISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESG 328
+ N + L SL+ L + +++ R+ F + L TL L N L L +
Sbjct: 159 LHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAE 218
Query: 329 LFQNLTHLSVLELNN 343
+ L L L LN+
Sbjct: 219 VLVPLRSLQYLRLND 233
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 9 NDRRNLDNPGLITINLNANPIQPV-EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLN 67
N R+L N L + L+ N I V E AF SL L + + +++++P F +L L
Sbjct: 146 NTFRDLGN--LTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLM 203
Query: 68 KLDLSGNPLRIIEPGVFDPLTSLEYLMLN 96
L L N L ++ V PL SL+YL LN
Sbjct: 204 TLYLFANNLSMLPAEVLVPLRSLQYLRLN 232
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 129/292 (44%), Gaps = 31/292 (10%)
Query: 22 INLNANPIQPVEG-AFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIE 80
+NLN I+ ++ AF A ++ LYM + + P F N+ L L L N L +
Sbjct: 74 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 133
Query: 81 PGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLV------- 133
G+F L L ++ NL I F L+ L+LS N+L +H+D +L+
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVDLSLIPSLFHAN 192
Query: 134 -----LGNLG---KLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQ 185
L L ++ LD + I+ + V N L L L N L D T
Sbjct: 193 VSYNLLSTLAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD----TAWLL 245
Query: 186 NLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSL 245
N L +DLS L+ + FV +L LY+S N L A L++ +P+ L L L
Sbjct: 246 NYPGLVEVDLSYNELEKIMYH-PFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDL 302
Query: 246 RNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSN 297
+ L + N +F L+ L + HN ++ T LS +L++L + +++
Sbjct: 303 SHNHLLHVERNQ-PQFDRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHND 350
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 114/275 (41%), Gaps = 43/275 (15%)
Query: 51 TLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDN 110
T+ K+ + + L+L+ + I+ F +++ L + + Y+ P F N
Sbjct: 56 TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 115
Query: 111 LNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLA 170
+ L L L +N L S + N KL TL + + + + D+ F T L+NL L+
Sbjct: 116 VPLLTVLVLERNDLSSLPRG--IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 173
Query: 171 ENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADL 230
N L +D++ L +L H + +S N LS +
Sbjct: 174 SNRLTHVDLS--LIPSLFHAN----------------------------VSYNLLSTLAI 203
Query: 231 SVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEH 290
+A++ L H + + R P N L L + HN L D TA L L
Sbjct: 204 PIAVEELDASHN----SINVVRGPVNVE-----LTILKLQHNNLTD--TAWLLNYPGLVE 252
Query: 291 LDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETL 325
+D+ Y+ L++I F+KM L+ L +S N+L L
Sbjct: 253 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL 287
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 65/131 (49%), Gaps = 3/131 (2%)
Query: 243 LSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRIS 302
++ +N + +LPA F ++ L+++ + + T + +++ L MG++ ++ +
Sbjct: 50 VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP 109
Query: 303 RSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPD 362
F + L L+L N L +L G+F N L+ L ++N L R+ + F +
Sbjct: 110 PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS--- 166
Query: 363 LEELRLSGNPL 373
L+ L+LS N L
Sbjct: 167 LQNLQLSSNRL 177
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 40/90 (44%)
Query: 249 GLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLK 308
+ LP + F L L + N L + L L M +NL+RI TF
Sbjct: 104 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 163
Query: 309 MTSLKTLILSGNKLETLESGLFQNLTHLSV 338
TSL+ L LS N+L ++ L +L H +V
Sbjct: 164 TTSLQNLQLSSNRLTHVDLSLIPSLFHANV 193
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 458 LPPNVFNNTRNITSLNLANNNLSMTSELSFQ 488
LP +F+NT +T+L+++NNNL + +FQ
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 162
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 92/192 (47%), Gaps = 28/192 (14%)
Query: 69 LDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHI 128
LDLS NPLR + F L+ L L+RC + I A+ +L+HL TL L+ N ++S
Sbjct: 57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-- 114
Query: 129 DWTLVLG---NLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQ 185
L LG L L L ++ +++L + + L+ LN+A N + +
Sbjct: 115 ---LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS- 170
Query: 186 NLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPL-------- 237
NL +L+ LDLS+ ++ + T LR L+ PL L ++L P+
Sbjct: 171 NLTNLEHLDLSSNKIQS-------IYCTDLRVLH--QMPLLNLSLDLSLNPMNFIQPGAF 221
Query: 238 --TKLHRLSLRN 247
+LH+L+LRN
Sbjct: 222 KEIRLHKLTLRN 233
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 116/430 (26%), Positives = 170/430 (39%), Gaps = 105/430 (24%)
Query: 19 LITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKIN--------------------- 56
L T+ L NPIQ + GAF SL L E L+ +
Sbjct: 102 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 161
Query: 57 ----PQFFTNLTTLNKLDLSGN----------------------------PLRIIEPGVF 84
P++F+NLT L LDLS N P+ I+PG F
Sbjct: 162 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 221
Query: 85 DPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLG---NLGKLD 141
+ + + N FD+LN +KT L+ H LVLG N G L+
Sbjct: 222 KEIRLHKLTLRNN----------FDSLNVMKTCIQGLAGLEVH---RLVLGEFRNEGNLE 268
Query: 142 TLDLRQ-SGISNLPDNVFANNTWLRNLNLAENELIDL-DVATTLGQ-NLVHL-------- 190
D G+ NL F L L+ + +IDL + T + +LV +
Sbjct: 269 KFDKSALEGLCNLTIEEFR----LAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDF 324
Query: 191 ------DSLDLSNCHLKGPLSEDAFVNATKLR-TLYLSGNPLSAADL-SVALKPLTKLHR 242
L+L NC G + +L T GN S DL S+ L++ +
Sbjct: 325 SYNFGWQHLELVNCKF-GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSR-NG 382
Query: 243 LSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRIS 302
LS + C + F + L+ LD+S N +I + L LE LEHLD +SNL+++S
Sbjct: 383 LSFKGC----CSQSDFGTIS-LKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMS 436
Query: 303 R-STFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLEL-NNCGLTRLNETVFHE--NY 358
S FL + +L L +S +G+F L+ L VL++ N +F E N
Sbjct: 437 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 496
Query: 359 TYPDLEELRL 368
T+ DL + +L
Sbjct: 497 TFLDLSQCQL 506
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 34 GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRI-IEPGVFDPLTSLEY 92
FL R+L+YL + F L++L L ++GN + P +F L +L +
Sbjct: 439 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 498
Query: 93 LMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKS 126
L L++C L +SP+AF++L+ L+ L +S N S
Sbjct: 499 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 532
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 66/133 (49%), Gaps = 2/133 (1%)
Query: 22 INLNANPIQPVEG-AFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIE 80
++L+ NP++ + +F L L + C + I + +L+ L+ L L+GNP++ +
Sbjct: 57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 116
Query: 81 PGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKL 140
G F L+SL+ L+ NL + +L LK L ++ N ++S NL L
Sbjct: 117 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS-FKLPEYFSNLTNL 175
Query: 141 DTLDLRQSGISNL 153
+ LDL + I ++
Sbjct: 176 EHLDLSSNKIQSI 188
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 87/209 (41%), Gaps = 33/209 (15%)
Query: 87 LTSLEYLMLNRCNLTY---ISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTL 143
L SLE+L L+R L++ S S F ++ LK L+LS N + I + L +L+ L
Sbjct: 370 LPSLEFLDLSRNGLSFKGCCSQSDFGTIS-LKYLDLSFNGV---ITMSSNFLGLEQLEHL 425
Query: 144 DLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGP 203
D + S + + + F+ LRNL LD+S+ H +
Sbjct: 426 DFQHSNLKQMSE--FSVFLSLRNLIY-----------------------LDISHTHTRVA 460
Query: 204 LSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTC 263
+ F + L L ++GN L L L L L C L +L F+ +
Sbjct: 461 FN-GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 519
Query: 264 LQELDISHNPLIDAFTALLSPLESLEHLD 292
LQ L++SHN T L SL+ LD
Sbjct: 520 LQVLNMSHNNFFSLDTFPYKCLNSLQVLD 548
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%)
Query: 265 QELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLET 324
+ LD+S NPL + L+ LD+ +Q I + ++ L TLIL+GN +++
Sbjct: 55 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 114
Query: 325 LESGLFQNLTHLSVL 339
L G F L+ L L
Sbjct: 115 LALGAFSGLSSLQKL 129
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 35/55 (63%)
Query: 287 SLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLEL 341
S ++LD+ ++ L+ + +F L+ L LS +++T+E G +Q+L+HLS L L
Sbjct: 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 107
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%)
Query: 57 PQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKT 116
P FT L L LDLS L + P F+ L+SL+ L ++ N + + LN L+
Sbjct: 487 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 546
Query: 117 LELSQNKL 124
L+ S N +
Sbjct: 547 LDYSLNHI 554
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 2/129 (1%)
Query: 216 RTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLI 275
+ L LS NPL S + +L L L C + + + + L L ++ NP+
Sbjct: 55 KNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 113
Query: 276 DAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLE-SGLFQNLT 334
S L SL+ L +NL + + +LK L ++ N +++ + F NLT
Sbjct: 114 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 173
Query: 335 HLSVLELNN 343
+L L+L++
Sbjct: 174 NLEHLDLSS 182
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 81/314 (25%), Positives = 132/314 (42%), Gaps = 31/314 (9%)
Query: 37 LVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLN 96
L S+ + +Q+ S ++ F T + +LDL+ L + G+ + + SL+ L+LN
Sbjct: 250 LCDMSVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNGLPSGI-EGMNSLKKLVLN 308
Query: 97 R------CNLTYIS-PS------------------AFDNLNHLKTLELSQNKLKSHIDWT 131
C + S PS + L +L+ L+LS + +++
Sbjct: 309 ANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCN 368
Query: 132 LVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLD 191
L L NL L L+L + L D F L L++A L + + QNL L
Sbjct: 369 LQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHL-HVKAPHSPFQNLHLLR 427
Query: 192 SLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVA--LKPLTKLHRLSLRNCG 249
L+LS+C L ++ LR L L GN +S L+ + L L L +C
Sbjct: 428 VLNLSHCLLDTS-NQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCN 486
Query: 250 LSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKM 309
L + FH + LD+SHN L LS L+ L +L+M +N++ I +
Sbjct: 487 LLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGL-YLNMASNNIRIIPPHLLPAL 545
Query: 310 TSLKTLILSGNKLE 323
+ + LS N L+
Sbjct: 546 SQQSIINLSHNPLD 559
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 112/528 (21%), Positives = 205/528 (38%), Gaps = 42/528 (7%)
Query: 42 LLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLT 101
L++L + C ++ ++ F + LN + L+GNPL + L++L L + ++
Sbjct: 58 LIFLDLTRCQINWVHEDTFQSHHQLNTIVLTGNPLIFMAETSLTGPKFLKHLFLTQTGIS 117
Query: 102 YISPSAFDNLNHLKTLELSQNKLKS-HIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFAN 160
+ NL +L++L L N + S ++ NL LD + IS N
Sbjct: 118 NLEFIPVHNLENLESLHLGSNHISSINLPENFPTQNLKVLDFQNNAIHYISRKDTNSLEQ 177
Query: 161 NTWLRNLNLAENELIDLD---VATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRT 217
T L +LN N++ ++ + + Q+L SL+L KG + + L++
Sbjct: 178 ATNL-SLNFNGNDIKGIEPGAFISKIFQSLKFGGSLNLFII-FKG-------LQNSTLQS 228
Query: 218 LYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSR-----LPANTFHRFTCLQELDISHN 272
L+L G D + L +S+ + L + L ++TF FT +QELD++
Sbjct: 229 LWL-GTFEDTDDQYLTSATFEGLCDMSVESINLQKHRFSDLSSSTFRCFTRVQELDLTAA 287
Query: 273 PLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNK---------LE 323
L + + + + SL+ L + ++ ++ + SL+ L + GN LE
Sbjct: 288 HL-NGLPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLE 346
Query: 324 TLESGLFQNLTHLSVLELNNCGLTRLN-ETVFHENYTYPD---LEELRLSGNPLHVLPDS 379
LE+ +L+H + + C L N + + N +Y + LE+ P L D
Sbjct: 347 KLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDV 406
Query: 380 TKQYSMRTIPTQIWKNFDFLVIL----FILNETVFHENYTYPDLEELRLSGNPLHVLPTG 435
+ P ++N L +L +L+ + H DL L L GN
Sbjct: 407 AFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSIS 466
Query: 436 NXXXXXXX-XXXXXXXXXCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFXXXXX 494
C + + F+ RN+ L+L++N+L+ S +
Sbjct: 467 KTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGLY 526
Query: 495 XXXXXXXXXXXXTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEW 542
H+ P + + + I L NP C C+ W
Sbjct: 527 LNMASNNIRIIPPHLLPALSQQ----SIINLSHNPLDCTCSNIHFITW 570
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 110/243 (45%), Gaps = 12/243 (4%)
Query: 17 PGLITINLNANPIQPV-EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP 75
P ++L N I + +G F ++L L + +SKI+P F L L +L LS N
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 76 LRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLG 135
L+ + + P T L+ L ++ +T + S F+ LN + +EL N LKS
Sbjct: 112 LKELPEKM--PKT-LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168
Query: 136 NLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDL 195
+ KL + + + I+ +P + + L L+L N++ +D A+ G N +L L L
Sbjct: 169 GMKKLSYIRIADTNITTIPQGLPPS---LTELHLDGNKITKVDAASLKGLN--NLAKLGL 223
Query: 196 SNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPA 255
S + + + N LR L+L+ N L + L + + L N +S + +
Sbjct: 224 SFNSISA-VDNGSLANTPHLRELHLNNNKL--VKVPGGLADHKYIQVVYLHNNNISAIGS 280
Query: 256 NTF 258
N F
Sbjct: 281 NDF 283
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 113/256 (44%), Gaps = 17/256 (6%)
Query: 29 IQPVEGAFLVARSLLYLYMQECT---LSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFD 85
I+P+ G R +L + +C+ L K+ P+ T L LDL N + I+ G F
Sbjct: 18 IEPM-GPVCPFRCQCHLRVVQCSDLGLEKV-PKDLPPDTAL--LDLQNNKITEIKDGDFK 73
Query: 86 PLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDL 145
L +L L+L ++ ISP AF L L+ L LS+N+LK L L L +
Sbjct: 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-----LPEKMPKTLQELRV 128
Query: 146 RQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLS 205
++ I+ + +VF + + L N L + Q + L + +++ + ++
Sbjct: 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN----IT 184
Query: 206 EDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQ 265
L L+L GN ++ D + +LK L L +L L +S + + L+
Sbjct: 185 TIPQGLPPSLTELHLDGNKITKVD-AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR 243
Query: 266 ELDISHNPLIDAFTAL 281
EL +++N L+ L
Sbjct: 244 ELHLNNNKLVKVPGGL 259
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 53/236 (22%), Positives = 97/236 (41%), Gaps = 40/236 (16%)
Query: 117 LELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELID 176
L+L NK+ D NL L TL L + IS + FA L L L++N+L +
Sbjct: 57 LDLQNNKITEIKDGDF--KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE 114
Query: 177 L--DVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADL-SVA 233
L + TL + VH + + + + F ++ + L NPL ++ + + A
Sbjct: 115 LPEKMPKTLQELRVHENEIT--------KVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 166
Query: 234 LKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDM 293
+ + KL + + + ++ +P L P SL L +
Sbjct: 167 FQGMKKLSYIRIADTNITTIPQG-------------------------LPP--SLTELHL 199
Query: 294 GYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRL 349
+ + ++ ++ + +L L LS N + +++G N HL L LNN L ++
Sbjct: 200 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV 255
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 291 LDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLN 350
LD+ + + I F + +L TLIL NK+ + G F L L L L+ L L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 351 ETVFHENYTYPDLEELRLSGN 371
E + L+ELR+ N
Sbjct: 117 EKMPK------TLQELRVHEN 131
>pdb|1A4Y|A Chain A, Ribonuclease Inhibitor-Angiogenin Complex
pdb|1A4Y|D Chain D, Ribonuclease Inhibitor-Angiogenin Complex
pdb|2BEX|A Chain A, Crystal Structure Of Placental Ribonuclease Inhibitor In
Complex With Human Eosinophil Derived Neurotoxin At 2a
Resolution
pdb|2BEX|B Chain B, Crystal Structure Of Placental Ribonuclease Inhibitor In
Complex With Human Eosinophil Derived Neurotoxin At 2a
Resolution
Length = 460
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 86/306 (28%), Positives = 128/306 (41%), Gaps = 48/306 (15%)
Query: 16 NPGLITINLNANPIQPVEGAFLVARSLL-------YLYMQECTLSKINPQFFTN----LT 64
NP L +NL +N + V G V + L L +Q C L+ ++ L
Sbjct: 54 NPALAELNLRSNELGDV-GVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLP 112
Query: 65 TLNKLDLSGN-----PLRIIEPGVFDPLTSLEYLMLNRCNLTYIS----PSAFDNLNHLK 115
TL +L LS N L+++ G+ DP LE L L C+L+ S S K
Sbjct: 113 TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFK 172
Query: 116 TLELSQNKLKSHIDWTLVLG---NLGKLDTLDLRQSGIS--NLPD--NVFANNTWLRNLN 168
L +S N + L G + +L+ L L G++ N D + A+ LR L
Sbjct: 173 ELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELA 232
Query: 169 LAENELIDLDVATTLGQNLVH----LDSLDLSNCHLKGPLSED---AFVNATKLRTLYLS 221
L N+L D+ +A L L+H L +L + C + D L+ L L+
Sbjct: 233 LGSNKLGDVGMA-ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLA 291
Query: 222 GNPLS--AADL--SVALKPLTKLHRLSLRNCGLSRLPANTF------HRFTCLQELDISH 271
GN L A L L+P +L L +++C + + F +RF L EL IS+
Sbjct: 292 GNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRF--LLELQISN 349
Query: 272 NPLIDA 277
N L DA
Sbjct: 350 NRLEDA 355
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 110/243 (45%), Gaps = 12/243 (4%)
Query: 17 PGLITINLNANPIQPV-EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP 75
P ++L N I + +G F ++L L + +SKI+P F L L +L LS N
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 76 LRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLG 135
L+ + + P T L+ L ++ +T + S F+ LN + +EL N LKS
Sbjct: 112 LKELPEKM--PKT-LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168
Query: 136 NLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDL 195
+ KL + + + I+ +P + + L L+L N++ +D A+ G N +L L L
Sbjct: 169 GMKKLSYIRIADTNITTIPQGLPPS---LTELHLDGNKITKVDAASLKGLN--NLAKLGL 223
Query: 196 SNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPA 255
S + + + N LR L+L+ N L + L + + L N +S + +
Sbjct: 224 SFNSISA-VDNGSLANTPHLRELHLNNNKL--VKVPGGLADHKYIQVVYLHNNNISAIGS 280
Query: 256 NTF 258
N F
Sbjct: 281 NDF 283
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 113/256 (44%), Gaps = 17/256 (6%)
Query: 29 IQPVEGAFLVARSLLYLYMQECT---LSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFD 85
I+P+ G R +L + +C+ L K+ P+ T L LDL N + I+ G F
Sbjct: 18 IEPM-GPVCPFRCQCHLRVVQCSDLGLEKV-PKDLPPDTAL--LDLQNNKITEIKDGDFK 73
Query: 86 PLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDL 145
L +L L+L ++ ISP AF L L+ L LS+N+LK L L L +
Sbjct: 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-----LPEKMPKTLQELRV 128
Query: 146 RQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLS 205
++ I+ + +VF + + L N L + Q + L + +++ + ++
Sbjct: 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN----IT 184
Query: 206 EDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQ 265
L L+L GN ++ D + +LK L L +L L +S + + L+
Sbjct: 185 TIPQGLPPSLTELHLDGNKITKVD-AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR 243
Query: 266 ELDISHNPLIDAFTAL 281
EL +++N L+ L
Sbjct: 244 ELHLNNNKLVKVPGGL 259
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 53/236 (22%), Positives = 97/236 (41%), Gaps = 40/236 (16%)
Query: 117 LELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELID 176
L+L NK+ D NL L TL L + IS + FA L L L++N+L +
Sbjct: 57 LDLQNNKITEIKDGDF--KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE 114
Query: 177 L--DVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADL-SVA 233
L + TL + VH + + + + F ++ + L NPL ++ + + A
Sbjct: 115 LPEKMPKTLQELRVHENEIT--------KVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 166
Query: 234 LKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDM 293
+ + KL + + + ++ +P L P SL L +
Sbjct: 167 FQGMKKLSYIRIADTNITTIPQG-------------------------LPP--SLTELHL 199
Query: 294 GYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRL 349
+ + ++ ++ + +L L LS N + +++G N HL L LNN L ++
Sbjct: 200 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV 255
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 291 LDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLN 350
LD+ + + I F + +L TLIL NK+ + G F L L L L+ L L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 351 ETVFHENYTYPDLEELRLSGN 371
E + L+ELR+ N
Sbjct: 117 EKMPK------TLQELRVHEN 131
>pdb|1Z7X|W Chain W, X-Ray Structure Of Human Ribonuclease Inhibitor Complexed
With Ribonuclease I
pdb|1Z7X|Y Chain Y, X-Ray Structure Of Human Ribonuclease Inhibitor Complexed
With Ribonuclease I
pdb|2Q4G|W Chain W, Ensemble Refinement Of The Protein Crystal Structure Of
Human Ribonuclease Inhibitor Complexed With Ribonuclease
I
pdb|2Q4G|Y Chain Y, Ensemble Refinement Of The Protein Crystal Structure Of
Human Ribonuclease Inhibitor Complexed With Ribonuclease
I
Length = 461
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 86/306 (28%), Positives = 128/306 (41%), Gaps = 48/306 (15%)
Query: 16 NPGLITINLNANPIQPVEGAFLVARSLL-------YLYMQECTLSKINPQFFTN----LT 64
NP L +NL +N + V G V + L L +Q C L+ ++ L
Sbjct: 55 NPALAELNLRSNELGDV-GVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLP 113
Query: 65 TLNKLDLSGN-----PLRIIEPGVFDPLTSLEYLMLNRCNLTYIS----PSAFDNLNHLK 115
TL +L LS N L+++ G+ DP LE L L C+L+ S S K
Sbjct: 114 TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFK 173
Query: 116 TLELSQNKLKSHIDWTLVLG---NLGKLDTLDLRQSGIS--NLPD--NVFANNTWLRNLN 168
L +S N + L G + +L+ L L G++ N D + A+ LR L
Sbjct: 174 ELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELA 233
Query: 169 LAENELIDLDVATTLGQNLVH----LDSLDLSNCHLKGPLSED---AFVNATKLRTLYLS 221
L N+L D+ +A L L+H L +L + C + D L+ L L+
Sbjct: 234 LGSNKLGDVGMA-ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLA 292
Query: 222 GNPLS--AADL--SVALKPLTKLHRLSLRNCGLSRLPANTF------HRFTCLQELDISH 271
GN L A L L+P +L L +++C + + F +RF L EL IS+
Sbjct: 293 GNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRF--LLELQISN 350
Query: 272 NPLIDA 277
N L DA
Sbjct: 351 NRLEDA 356
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 92/259 (35%), Gaps = 79/259 (30%)
Query: 298 LQRISRSTFLKMTSLKTLILSGN-KLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHE 356
L RI + F + L+ L LS N +L +++ F L L L L+ CGL L +F
Sbjct: 68 LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR- 126
Query: 357 NYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFI-------LNETV 409
L+ L L N L LPD T +++ L LF+ + E
Sbjct: 127 --GLAALQYLYLQDNALQALPDDT------------FRDLGNLTHLFLHGNRISSVPERA 172
Query: 410 FHENYTYPDLEELRLSGNPLHVLPTGNXXXXXXXXXXXXXXXXCKIDYLPPNVFNNTRNI 469
F ++ L+ L L N ++ ++ P+ F + +
Sbjct: 173 FRGLHS---LDRLLLHQN--------------------------RVAHVHPHAFRDLGRL 203
Query: 470 TSLNLANNNLSMTSELSFQFXXXXXXXXXXXXXXXXXTHISPTVLRHNRAITSIKLVGNP 529
+L L NNLS + L RA+ ++L NP
Sbjct: 204 MTLYLFANNLSA---------------------------LPTEALAPLRALQYLRLNDNP 236
Query: 530 WKCDCNIADMWEWATREKG 548
W CDC +W W + +G
Sbjct: 237 WVCDCRARPLWAWLQKFRG 255
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 1/109 (0%)
Query: 19 LITINLNANPIQPV-EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLR 77
L T++L+ +Q + G F +L YLY+Q+ L + F +L L L L GN +
Sbjct: 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS 166
Query: 78 IIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKS 126
+ F L SL+ L+L++ + ++ P AF +L L TL L N L +
Sbjct: 167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 77/182 (42%), Gaps = 28/182 (15%)
Query: 22 INLNANPIQPVEGA-FLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP----- 75
I L+ N I V A F R+L L++ L++I+ FT L L +LDLS N
Sbjct: 37 IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96
Query: 76 --------------------LRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLK 115
L+ + PG+F L +L+YL L L + F +L +L
Sbjct: 97 DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT 156
Query: 116 TLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELI 175
L L N++ S + L LD L L Q+ ++++ + F + L L L N L
Sbjct: 157 HLFLHGNRISSVPERAFR--GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214
Query: 176 DL 177
L
Sbjct: 215 AL 216
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 91/227 (40%), Gaps = 29/227 (12%)
Query: 67 NKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKS 126
++ L GN + + F +L L L+ L I +AF L L+ L+LS N
Sbjct: 35 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94
Query: 127 HIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQN 186
+D G LG+L TL L + G+ L +F L+ L L +N L
Sbjct: 95 SVDPATFHG-LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL------------ 141
Query: 187 LVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLR 246
L +D F + L L+L GN +S+ A + L L RL L
Sbjct: 142 ---------------QALPDDTFRDLGNLTHLFLHGNRISSVP-ERAFRGLHSLDRLLLH 185
Query: 247 NCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDM 293
++ + + F L L + N L T L+PL +L++L +
Sbjct: 186 QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL 232
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 82/199 (41%), Gaps = 20/199 (10%)
Query: 241 HRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMG-YSNLQ 299
R+ L +S +PA +F L L + N L A + L LE LD+ + L+
Sbjct: 35 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94
Query: 300 RISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYT 359
+ +TF + L TL L L+ L GLF+ L L L L + L L + F +
Sbjct: 95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD--- 151
Query: 360 YPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHEN-YTYPD 418
+L L L GN + ++P + ++ L L + V H + + + D
Sbjct: 152 LGNLTHLFLHGN------------RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199
Query: 419 LEELR---LSGNPLHVLPT 434
L L L N L LPT
Sbjct: 200 LGRLMTLYLFANNLSALPT 218
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 65/150 (43%), Gaps = 2/150 (1%)
Query: 208 AFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLR-NCGLSRLPANTFHRFTCLQE 266
+F L L+L N L+ D + A L L +L L N L + TFH L
Sbjct: 51 SFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109
Query: 267 LDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLE 326
L + L + L L +L++L + + LQ + TF + +L L L GN++ ++
Sbjct: 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169
Query: 327 SGLFQNLTHLSVLELNNCGLTRLNETVFHE 356
F+ L L L L+ + ++ F +
Sbjct: 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 12 RNLDNPGLITINLNANPIQPV-EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLD 70
R+L N L + L+ N I V E AF SL L + + ++ ++P F +L L L
Sbjct: 150 RDLGN--LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207
Query: 71 LSGNPLRIIEPGVFDPLTSLEYLMLN 96
L N L + PL +L+YL LN
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLN 233
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Query: 77 RIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGN 136
RI G+F L L L L R LT I P+AF+ +H++ L+L +NK+K I + LG
Sbjct: 43 RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE-ISNKMFLG- 100
Query: 137 LGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAEN 172
L +L TL+L + IS + F + L +LNLA N
Sbjct: 101 LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Query: 24 LNANPIQPVEGAFLVAR--SLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEP 81
LN N + + L R L+ L ++ L+ I P F + + +L L N ++ I
Sbjct: 36 LNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISN 95
Query: 82 GVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQN--KLKSHIDW 130
+F L L+ L L ++ + P +F++LN L +L L+ N H+ W
Sbjct: 96 KMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW 146
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 4/109 (3%)
Query: 454 KIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFXXXXXXXXXXXXXXXXXTHISPTV 513
++ + PN F +I L L N + E+S + + + P
Sbjct: 65 QLTGIEPNAFEGASHIQELQLGENKIK---EISNKMFLGLHQLKTLNLYDNQISCVMPGS 121
Query: 514 LRHNRAITSIKLVGNPWKCDCNIADMWEWATREKGDIGVLVGSTTPTEI 562
H ++TS+ L NP+ C+C++A EW R+K G P+++
Sbjct: 122 FEHLNSLTSLNLASNPFNCNCHLAWFAEW-LRKKSLNGGAARCGAPSKV 169
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 12/119 (10%)
Query: 113 HLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAEN 172
H L L+ N+L I + G L L L+L+++ ++ + N F + ++ L L EN
Sbjct: 30 HTTELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88
Query: 173 ELIDLDVATTLGQNLVHLDSLDLSN----CHLKGPLSEDAFVNATKLRTLYLSGNPLSA 227
++ ++ LG L L +L+L + C + G +F + L +L L+ NP +
Sbjct: 89 KIKEISNKMFLG--LHQLKTLNLYDNQISCVMPG-----SFEHLNSLTSLNLASNPFNC 140
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 24/124 (19%)
Query: 218 LYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDA 277
L L+ N L L L +L L+ L+ + N F + +QEL +
Sbjct: 34 LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL-------- 85
Query: 278 FTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLS 337
G + ++ IS FL + LKTL L N++ + G F++L L+
Sbjct: 86 ----------------GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129
Query: 338 VLEL 341
L L
Sbjct: 130 SLNL 133
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 92/259 (35%), Gaps = 79/259 (30%)
Query: 298 LQRISRSTFLKMTSLKTLILSGN-KLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHE 356
L RI + F + L+ L LS N +L +++ F L L L L+ CGL L +F
Sbjct: 67 LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR- 125
Query: 357 NYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFI-------LNETV 409
L+ L L N L LPD T +++ L LF+ + E
Sbjct: 126 --GLAALQYLYLQDNALQALPDDT------------FRDLGNLTHLFLHGNRISSVPERA 171
Query: 410 FHENYTYPDLEELRLSGNPLHVLPTGNXXXXXXXXXXXXXXXXCKIDYLPPNVFNNTRNI 469
F ++ L+ L L N ++ ++ P+ F + +
Sbjct: 172 FRGLHS---LDRLLLHQN--------------------------RVAHVHPHAFRDLGRL 202
Query: 470 TSLNLANNNLSMTSELSFQFXXXXXXXXXXXXXXXXXTHISPTVLRHNRAITSIKLVGNP 529
+L L NNLS + L RA+ ++L NP
Sbjct: 203 MTLYLFANNLSA---------------------------LPTEALAPLRALQYLRLNDNP 235
Query: 530 WKCDCNIADMWEWATREKG 548
W CDC +W W + +G
Sbjct: 236 WVCDCRARPLWAWLQKFRG 254
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 1/109 (0%)
Query: 19 LITINLNANPIQPV-EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLR 77
L T++L+ +Q + G F +L YLY+Q+ L + F +L L L L GN +
Sbjct: 106 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS 165
Query: 78 IIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKS 126
+ F L SL+ L+L++ + ++ P AF +L L TL L N L +
Sbjct: 166 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 214
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 76/179 (42%), Gaps = 28/179 (15%)
Query: 22 INLNANPIQPVEGA-FLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP----- 75
I L+ N I V A F R+L L++ L++I+ FT L L +LDLS N
Sbjct: 36 IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 95
Query: 76 --------------------LRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLK 115
L+ + PG+F L +L+YL L L + F +L +L
Sbjct: 96 DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT 155
Query: 116 TLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENEL 174
L L N++ S + L LD L L Q+ ++++ + F + L L L N L
Sbjct: 156 HLFLHGNRISSVPERAFR--GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 212
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 91/227 (40%), Gaps = 29/227 (12%)
Query: 67 NKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKS 126
++ L GN + + F +L L L+ L I +AF L L+ L+LS N
Sbjct: 34 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 93
Query: 127 HIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQN 186
+D G LG+L TL L + G+ L +F L+ L L +N L
Sbjct: 94 SVDPATFHG-LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL------------ 140
Query: 187 LVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLR 246
L +D F + L L+L GN +S+ A + L L RL L
Sbjct: 141 ---------------QALPDDTFRDLGNLTHLFLHGNRISSVP-ERAFRGLHSLDRLLLH 184
Query: 247 NCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDM 293
++ + + F L L + N L T L+PL +L++L +
Sbjct: 185 QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL 231
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 82/199 (41%), Gaps = 20/199 (10%)
Query: 241 HRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMG-YSNLQ 299
R+ L +S +PA +F L L + N L A + L LE LD+ + L+
Sbjct: 34 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 93
Query: 300 RISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYT 359
+ +TF + L TL L L+ L GLF+ L L L L + L L + F +
Sbjct: 94 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD--- 150
Query: 360 YPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHEN-YTYPD 418
+L L L GN + ++P + ++ L L + V H + + + D
Sbjct: 151 LGNLTHLFLHGN------------RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 198
Query: 419 LEELR---LSGNPLHVLPT 434
L L L N L LPT
Sbjct: 199 LGRLMTLYLFANNLSALPT 217
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 72/171 (42%), Gaps = 5/171 (2%)
Query: 208 AFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLR-NCGLSRLPANTFHRFTCLQE 266
+F L L+L N L+ D + A L L +L L N L + TFH L
Sbjct: 50 SFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 108
Query: 267 LDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLE 326
L + L + L L +L++L + + LQ + TF + +L L L GN++ ++
Sbjct: 109 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 168
Query: 327 SGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLP 377
F+ L L L L+ + ++ F + L L L N L LP
Sbjct: 169 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRD---LGRLMTLYLFANNLSALP 216
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 12 RNLDNPGLITINLNANPIQPV-EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLD 70
R+L N L + L+ N I V E AF SL L + + ++ ++P F +L L L
Sbjct: 149 RDLGN--LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 206
Query: 71 LSGNPLRIIEPGVFDPLTSLEYLMLN 96
L N L + PL +L+YL LN
Sbjct: 207 LFANNLSALPTEALAPLRALQYLRLN 232
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 76/160 (47%), Gaps = 7/160 (4%)
Query: 218 LYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDA 277
L+LS N L L+ L P T+L +L+L C L++L + L LD+SHN L +
Sbjct: 36 LHLSENLLYTFSLAT-LMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHNQL-QS 91
Query: 278 FTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLS 337
L L +L LD+ ++ L + + L+ L L GN+L+TL GL L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 338 VLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLP 377
L L N LT L + + +L+ L L N L+ +P
Sbjct: 152 KLSLANNNLTELPAGLLN---GLENLDTLLLQENSLYTIP 188
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 71/164 (43%), Gaps = 7/164 (4%)
Query: 167 LNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLS 226
L+L+EN L +AT + L L+L C L L D + L TL LS N L
Sbjct: 36 LHLSENLLYTFSLATLMPY--TRLTQLNLDRCELTK-LQVDGTLPV--LGTLDLSHNQLQ 90
Query: 227 AADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLE 286
+ L + + L L L + L+ LP LQEL + N L LL+P
Sbjct: 91 S--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 148
Query: 287 SLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLF 330
LE L + +NL + + +L TL+L N L T+ G F
Sbjct: 149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Query: 17 PGLITINLNANPIQ--PVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGN 74
P L T++L+ N +Q P+ G L A ++L + L+ + L L +L L GN
Sbjct: 77 PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR--LTSLPLGALRGLGELQELYLKGN 134
Query: 75 PLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKL 124
L+ + PG+ P LE L L NLT + + L +L TL L +N L
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 79/228 (34%), Gaps = 44/228 (19%)
Query: 315 LILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLH 374
L LS N L T T L+ L L+ C LT+L + T P L L LS N L
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL-----QVDGTLPVLGTLDLSHNQLQ 90
Query: 375 VLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPT 434
LP + T+ + +F+ L L + E L+EL L GN L LP
Sbjct: 91 SLPLLGQTLPALTV---LDVSFNRLTSLPLGALRGLGE------LQELYLKGNELKTLPP 141
Query: 435 GNXXXXXXXXXXXXXXXXCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFXXXXX 494
G + LP + N N+ +L L N+L + F
Sbjct: 142 G--LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG------ 193
Query: 495 XXXXXXXXXXXXTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEW 542
+H+ P H GNPW C+C I W
Sbjct: 194 ------------SHLLPFAFLH----------GNPWLCNCEILYFRRW 219
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 70/177 (39%), Gaps = 27/177 (15%)
Query: 69 LDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSH- 127
L LS N L P T L L L+RC LT + L L TL+LS N+L+S
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHNQLQSLP 93
Query: 128 -IDWTL-------------------VLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNL 167
+ TL L LG+L L L+ + + LP + L L
Sbjct: 94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 168 NLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNP 224
+LA N L +L L L +LD+L L L F + L +L GNP
Sbjct: 154 SLANNNLTELPAG--LLNGLENLDTLLLQENSLYT--IPKGFFGSHLLPFAFLHGNP 206
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 76/160 (47%), Gaps = 7/160 (4%)
Query: 218 LYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDA 277
L+LS N L L+ L P T+L +L+L C L++L + L LD+SHN L +
Sbjct: 36 LHLSENLLYTFSLAT-LMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHNQL-QS 91
Query: 278 FTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLS 337
L L +L LD+ ++ L + + L+ L L GN+L+TL GL L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 338 VLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLP 377
L L N LT L + + +L+ L L N L+ +P
Sbjct: 152 KLSLANNDLTELPAGLLN---GLENLDTLLLQENSLYTIP 188
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 71/164 (43%), Gaps = 7/164 (4%)
Query: 167 LNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLS 226
L+L+EN L +AT + L L+L C L L D + L TL LS N L
Sbjct: 36 LHLSENLLYTFSLATLM--PYTRLTQLNLDRCELTK-LQVDGTLPV--LGTLDLSHNQLQ 90
Query: 227 AADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLE 286
+ L + + L L L + L+ LP LQEL + N L LL+P
Sbjct: 91 S--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 148
Query: 287 SLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLF 330
LE L + ++L + + +L TL+L N L T+ G F
Sbjct: 149 KLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Query: 17 PGLITINLNANPIQ--PVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGN 74
P L T++L+ N +Q P+ G L A ++L + L+ + L L +L L GN
Sbjct: 77 PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR--LTSLPLGALRGLGELQELYLKGN 134
Query: 75 PLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKL 124
L+ + PG+ P LE L L +LT + + L +L TL L +N L
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSL 184
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 81/230 (35%), Gaps = 48/230 (20%)
Query: 315 LILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLH 374
L LS N L T T L+ L L+ C LT+L + T P L L LS N L
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL-----QVDGTLPVLGTLDLSHNQLQ 90
Query: 375 VLPDSTKQYSMRTIP--TQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVL 432
LP +T+P T + +F+ L L + E L+EL L GN L L
Sbjct: 91 SLP-----LLGQTLPALTVLDVSFNRLTSLPLGALRGLGE------LQELYLKGNELKTL 139
Query: 433 PTGNXXXXXXXXXXXXXXXXCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFXXX 492
P G + LP + N N+ +L L N+L + F
Sbjct: 140 PPG--LLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF----- 192
Query: 493 XXXXXXXXXXXXXXTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEW 542
+H+ P H GNPW C+C I W
Sbjct: 193 -------------GSHLLPFAFLH----------GNPWLCNCEILYFRRW 219
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 71/177 (40%), Gaps = 27/177 (15%)
Query: 69 LDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSH- 127
L LS N L P T L L L+RC LT + L L TL+LS N+L+S
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHNQLQSLP 93
Query: 128 -IDWTL-------------------VLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNL 167
+ TL L LG+L L L+ + + LP + L L
Sbjct: 94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 168 NLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNP 224
+LA N+L +L L L +LD+L L L F + L +L GNP
Sbjct: 154 SLANNDLTELPAG--LLNGLENLDTLLLQENSLY--TIPKGFFGSHLLPFAFLHGNP 206
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 76/160 (47%), Gaps = 7/160 (4%)
Query: 218 LYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDA 277
L+LS N L L+ L P T+L +L+L C L++L + L LD+SHN L +
Sbjct: 37 LHLSENLLYTFSLAT-LMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHNQL-QS 92
Query: 278 FTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLS 337
L L +L LD+ ++ L + + L+ L L GN+L+TL GL L
Sbjct: 93 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 152
Query: 338 VLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLP 377
L L N LT L + + +L+ L L N L+ +P
Sbjct: 153 KLSLANNNLTELPAGLLN---GLENLDTLLLQENSLYTIP 189
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 71/164 (43%), Gaps = 7/164 (4%)
Query: 167 LNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLS 226
L+L+EN L +AT + L L+L C L L D + L TL LS N L
Sbjct: 37 LHLSENLLYTFSLATLMPY--TRLTQLNLDRCELTK-LQVDGTLPV--LGTLDLSHNQLQ 91
Query: 227 AADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLE 286
+ L + + L L L + L+ LP LQEL + N L LL+P
Sbjct: 92 S--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 149
Query: 287 SLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLF 330
LE L + +NL + + +L TL+L N L T+ G F
Sbjct: 150 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 193
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Query: 17 PGLITINLNANPIQ--PVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGN 74
P L T++L+ N +Q P+ G L A ++L + L+ + L L +L L GN
Sbjct: 78 PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR--LTSLPLGALRGLGELQELYLKGN 135
Query: 75 PLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKL 124
L+ + PG+ P LE L L NLT + + L +L TL L +N L
Sbjct: 136 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 185
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 79/228 (34%), Gaps = 44/228 (19%)
Query: 315 LILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLH 374
L LS N L T T L+ L L+ C LT+L + T P L L LS N L
Sbjct: 37 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL-----QVDGTLPVLGTLDLSHNQLQ 91
Query: 375 VLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPT 434
LP + T+ + +F+ L L + E L+EL L GN L LP
Sbjct: 92 SLPLLGQTLPALTV---LDVSFNRLTSLPLGALRGLGE------LQELYLKGNELKTLPP 142
Query: 435 GNXXXXXXXXXXXXXXXXCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFXXXXX 494
G + LP + N N+ +L L N+L + F
Sbjct: 143 G--LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG------ 194
Query: 495 XXXXXXXXXXXXTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEW 542
+H+ P H GNPW C+C I W
Sbjct: 195 ------------SHLLPFAFLH----------GNPWLCNCEILYFRRW 220
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 70/177 (39%), Gaps = 27/177 (15%)
Query: 69 LDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSH- 127
L LS N L P T L L L+RC LT + L L TL+LS N+L+S
Sbjct: 37 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHNQLQSLP 94
Query: 128 -IDWTL-------------------VLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNL 167
+ TL L LG+L L L+ + + LP + L L
Sbjct: 95 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 154
Query: 168 NLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNP 224
+LA N L +L L L +LD+L L L F + L +L GNP
Sbjct: 155 SLANNNLTELPAG--LLNGLENLDTLLLQENSLYT--IPKGFFGSHLLPFAFLHGNP 207
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 53/116 (45%), Gaps = 2/116 (1%)
Query: 21 TINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIE 80
T+N + V +L+LY+ + ++K+ P F +LT L L+L+ N L +
Sbjct: 23 TVNCQERSLASVPAGIPTTTQVLHLYINQ--ITKLEPGVFDSLTQLTYLNLAVNQLTALP 80
Query: 81 PGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGN 136
GVFD LT L +L L+ L I FDNL L + L N L L N
Sbjct: 81 VGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNNPWDCECSDILYLKN 136
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 285 LESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNN 343
L L +L++ + L + F K+T L L L N+L+++ G+F NL L+ + L N
Sbjct: 63 LTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFN 121
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
Query: 454 KIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFXXXXXXXXXXXXXXXXXTHISPTV 513
+I L P VF++ +T LNLA N L+ L I V
Sbjct: 51 QITKLEPGVFDSLTQLTYLNLAVNQLT---ALPVGVFDKLTKLTHLALHINQLKSIPMGV 107
Query: 514 LRHNRAITSIKLVGNPWKCDCN 535
+ +++T I L NPW C+C+
Sbjct: 108 FDNLKSLTHIYLFNNPWDCECS 129
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 76/160 (47%), Gaps = 7/160 (4%)
Query: 218 LYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDA 277
L+LS N L L+ L P T+L +L+L C L++L + L LD+SHN L +
Sbjct: 36 LHLSENLLYTFSLA-TLMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHNQL-QS 91
Query: 278 FTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLS 337
L L +L LD+ ++ L + + L+ L L GN+L+TL GL L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 338 VLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLP 377
L L N LT L + + +L+ L L N L+ +P
Sbjct: 152 KLSLANNQLTELPAGLLN---GLENLDTLLLQENSLYTIP 188
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 81/187 (43%), Gaps = 12/187 (6%)
Query: 144 DLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGP 203
D RQ ++ LP ++ + T L +L+EN L +AT + L L+L C L
Sbjct: 18 DKRQ--LTALPPDLPKDTTIL---HLSENLLYTFSLATLM--PYTRLTQLNLDRCELTK- 69
Query: 204 LSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTC 263
L D + L TL LS N L + L + + L L L + L+ LP
Sbjct: 70 LQVDGTLPV--LGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125
Query: 264 LQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLE 323
LQEL + N L LL+P LE L + + L + + +L TL+L N L
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY 185
Query: 324 TLESGLF 330
T+ G F
Sbjct: 186 TIPKGFF 192
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
Query: 17 PGLITINLNANPIQ--PVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGN 74
P L T++L+ N +Q P+ G L A ++L + L+ + L L +L L GN
Sbjct: 77 PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR--LTSLPLGALRGLGELQELYLKGN 134
Query: 75 PLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKL 124
L+ + PG+ P LE L L LT + + L +L TL L +N L
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 82/230 (35%), Gaps = 48/230 (20%)
Query: 315 LILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLH 374
L LS N L T T L+ L L+ C LT+L + T P L L LS N L
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL-----QVDGTLPVLGTLDLSHNQLQ 90
Query: 375 VLPDSTKQYSMRTIP--TQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVL 432
LP +T+P T + +F+ L L + E L+EL L GN L L
Sbjct: 91 SLP-----LLGQTLPALTVLDVSFNRLTSLPLGALRGLGE------LQELYLKGNELKTL 139
Query: 433 PTGNXXXXXXXXXXXXXXXXCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFXXX 492
P G ++ LP + N N+ +L L N+L + F
Sbjct: 140 PPG--LLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF----- 192
Query: 493 XXXXXXXXXXXXXXTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEW 542
+H+ P H GNPW C+C I W
Sbjct: 193 -------------GSHLLPFAFLH----------GNPWLCNCEILYFRRW 219
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 71/177 (40%), Gaps = 27/177 (15%)
Query: 69 LDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSH- 127
L LS N L P T L L L+RC LT + L L TL+LS N+L+S
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHNQLQSLP 93
Query: 128 -IDWTL-------------------VLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNL 167
+ TL L LG+L L L+ + + LP + L L
Sbjct: 94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 168 NLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNP 224
+LA N+L +L L L +LD+L L L F + L +L GNP
Sbjct: 154 SLANNQLTELPAG--LLNGLENLDTLLLQENSLYT--IPKGFFGSHLLPFAFLHGNP 206
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 76/160 (47%), Gaps = 7/160 (4%)
Query: 218 LYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDA 277
L+LS N L L+ L P T+L +L+L C L++L + L LD+SHN L +
Sbjct: 36 LHLSENLLYTFSLA-TLMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHNQL-QS 91
Query: 278 FTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLS 337
L L +L LD+ ++ L + + L+ L L GN+L+TL GL L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 338 VLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLP 377
L L N LT L + + +L+ L L N L+ +P
Sbjct: 152 KLSLANNQLTELPAGLLN---GLENLDTLLLQENSLYTIP 188
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 81/187 (43%), Gaps = 12/187 (6%)
Query: 144 DLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGP 203
D RQ ++ LP ++ + T L +L+EN L +AT + L L+L C L
Sbjct: 18 DKRQ--LTALPPDLPKDTTIL---HLSENLLYTFSLATLM--PYTRLTQLNLDRCELTK- 69
Query: 204 LSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTC 263
L D + L TL LS N L + L + + L L L + L+ LP
Sbjct: 70 LQVDGTLPV--LGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125
Query: 264 LQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLE 323
LQEL + N L LL+P LE L + + L + + +L TL+L N L
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY 185
Query: 324 TLESGLF 330
T+ G F
Sbjct: 186 TIPKGFF 192
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
Query: 17 PGLITINLNANPIQ--PVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGN 74
P L T++L+ N +Q P+ G L A ++L + L+ + L L +L L GN
Sbjct: 77 PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR--LTSLPLGALRGLGELQELYLKGN 134
Query: 75 PLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKL 124
L+ + PG+ P LE L L LT + + L +L TL L +N L
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 82/230 (35%), Gaps = 48/230 (20%)
Query: 315 LILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLH 374
L LS N L T T L+ L L+ C LT+L + T P L L LS N L
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL-----QVDGTLPVLGTLDLSHNQLQ 90
Query: 375 VLPDSTKQYSMRTIP--TQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVL 432
LP +T+P T + +F+ L L + E L+EL L GN L L
Sbjct: 91 SLP-----LLGQTLPALTVLDVSFNRLTSLPLGALRGLGE------LQELYLKGNELKTL 139
Query: 433 PTGNXXXXXXXXXXXXXXXXCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFXXX 492
P G ++ LP + N N+ +L L N+L + F
Sbjct: 140 PPG--LLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF----- 192
Query: 493 XXXXXXXXXXXXXXTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEW 542
+H+ P H GNPW C+C I W
Sbjct: 193 -------------GSHLLPFAFLH----------GNPWLCNCEILYFRRW 219
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 71/177 (40%), Gaps = 27/177 (15%)
Query: 69 LDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSH- 127
L LS N L P T L L L+RC LT + L L TL+LS N+L+S
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHNQLQSLP 93
Query: 128 -IDWTL-------------------VLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNL 167
+ TL L LG+L L L+ + + LP + L L
Sbjct: 94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 168 NLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNP 224
+LA N+L +L L L +LD+L L L F + L +L GNP
Sbjct: 154 SLANNQLTELPAG--LLNGLENLDTLLLQENSLYT--IPKGFFGSHLLPFAFLHGNP 206
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 83/173 (47%), Gaps = 14/173 (8%)
Query: 198 CHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANT 257
C+ KG S + ++ R L L N L + V LT+L +LSL + GLS +
Sbjct: 14 CNSKGLTSVPTGIPSSATR-LELESNKLQSLPHGV-FDKLTQLTKLSLSSNGLSFKGCCS 71
Query: 258 FHRF--TCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISR-STFLKMTSLKT 314
F T L+ LD+S N +I + L LE LEHLD +SNL+++S S FL + +L
Sbjct: 72 QSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 130
Query: 315 LILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELR 367
L +S +G+F L+ L VL ++ F EN+ ELR
Sbjct: 131 LDISHTHTRVAFNGIFNGLSSLEVL--------KMAGNSFQENFLPDIFTELR 175
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 97/232 (41%), Gaps = 33/232 (14%)
Query: 64 TTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTY---ISPSAFDNLNHLKTLELS 120
++ +L+L N L+ + GVFD LT L L L+ L++ S S F + LK L+LS
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS-LKYLDLS 86
Query: 121 QNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVA 180
N + I + L +L+ LD + S + + + F+ LRNL
Sbjct: 87 FNGV---ITMSSNFLGLEQLEHLDFQHSNLKQMSE--FSVFLSLRNLIY----------- 130
Query: 181 TTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKL 240
LD+S+ H + + F + L L ++GN L L L
Sbjct: 131 ------------LDISHTHTRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 177
Query: 241 HRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLD 292
L L C L +L F+ + LQ L++SHN T L SL+ LD
Sbjct: 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 229
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 34 GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRI-IEPGVFDPLTSLEY 92
FL R+L+YL + F L++L L ++GN + P +F L +L +
Sbjct: 120 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 179
Query: 93 LMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKS 126
L L++C L +SP+AF++L+ L+ L +S N S
Sbjct: 180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 213
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%)
Query: 57 PQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKT 116
P FT L L LDLS L + P F+ L+SL+ L ++ N + + LN L+
Sbjct: 168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 227
Query: 117 LELSQNKL 124
L+ S N +
Sbjct: 228 LDYSLNHI 235
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 79/190 (41%), Gaps = 26/190 (13%)
Query: 310 TSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLS 369
+S L L NKL++L G+F LT L+ L L++ GL+ ++ L+ L LS
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS-FKGCCSQSDFGTTSLKYLDLS 86
Query: 370 GNPLHVLPDSTKQYSMRTIP------TQIWKNFDFLVILFILNETVFHENYTY------- 416
N V+ S+ + + + + + +F V L + N ++T+
Sbjct: 87 FNG--VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 144
Query: 417 -----PDLEELRLSGNPLH--VLPTGNXXXXXXXXXXXXXXXXCKIDYLPPNVFNNTRNI 469
LE L+++GN LP C+++ L P FN+ ++
Sbjct: 145 IFNGLSSLEVLKMAGNSFQENFLPD---IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 201
Query: 470 TSLNLANNNL 479
LN+++NN
Sbjct: 202 QVLNMSHNNF 211
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 76/160 (47%), Gaps = 7/160 (4%)
Query: 218 LYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDA 277
L+LS N L L+ L P T+L +L+L C L++L + L LD+SHN L +
Sbjct: 36 LHLSENLLYTFSLA-TLMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHNQL-QS 91
Query: 278 FTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLS 337
L L +L LD+ ++ L + + L+ L L GN+L+TL GL L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 338 VLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLP 377
L L N LT L + + +L+ L L N L+ +P
Sbjct: 152 KLSLANNQLTELPAGLLN---GLENLDTLLLQENSLYTIP 188
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 81/187 (43%), Gaps = 12/187 (6%)
Query: 144 DLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGP 203
D RQ ++ LP ++ + T L +L+EN L +AT + L L+L C L
Sbjct: 18 DKRQ--LTALPPDLPKDTTIL---HLSENLLYTFSLATLMPY--TRLTQLNLDRCELTK- 69
Query: 204 LSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTC 263
L D + L TL LS N L + L + + L L L + L+ LP
Sbjct: 70 LQVDGTLPV--LGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125
Query: 264 LQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLE 323
LQEL + N L LL+P LE L + + L + + +L TL+L N L
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY 185
Query: 324 TLESGLF 330
T+ G F
Sbjct: 186 TIPKGFF 192
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
Query: 17 PGLITINLNANPIQ--PVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGN 74
P L T++L+ N +Q P+ G L A ++L + L+ + L L +L L GN
Sbjct: 77 PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR--LTSLPLGALRGLGELQELYLKGN 134
Query: 75 PLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKL 124
L+ + PG+ P LE L L LT + + L +L TL L +N L
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 80/228 (35%), Gaps = 44/228 (19%)
Query: 315 LILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLH 374
L LS N L T T L+ L L+ C LT+L + T P L L LS N L
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL-----QVDGTLPVLGTLDLSHNQLQ 90
Query: 375 VLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPT 434
LP + T+ + +F+ L L + E L+EL L GN L LP
Sbjct: 91 SLPLLGQTLPALTV---LDVSFNRLTSLPLGALRGLGE------LQELYLKGNELKTLPP 141
Query: 435 GNXXXXXXXXXXXXXXXXCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFXXXXX 494
G ++ LP + N N+ +L L N+L + F
Sbjct: 142 G--LLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF------- 192
Query: 495 XXXXXXXXXXXXTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEW 542
+H+ P H GNPW C+C I W
Sbjct: 193 -----------GSHLLPFAFLH----------GNPWLCNCEILYFRRW 219
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 71/177 (40%), Gaps = 27/177 (15%)
Query: 69 LDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSH- 127
L LS N L P T L L L+RC LT + L L TL+LS N+L+S
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHNQLQSLP 93
Query: 128 -IDWTL-------------------VLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNL 167
+ TL L LG+L L L+ + + LP + L L
Sbjct: 94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 168 NLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNP 224
+LA N+L +L L L +LD+L L L F + L +L GNP
Sbjct: 154 SLANNQLTELPAG--LLNGLENLDTLLLQENSLYT--IPKGFFGSHLLPFAFLHGNP 206
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 8/169 (4%)
Query: 189 HLDSLDLSNCHLKG--PLSED-AFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSL 245
+D + + C L G P++ ++ TL + L L L L R
Sbjct: 71 EVDRVQMRRCMLPGHTPIASILDYLGIVSPTTLIFESDNLGMNITRQHLDRLHGLKRFRF 130
Query: 246 RNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRST 305
L+ +PAN L L++ N + + + L LE+LE ++ G + L+++ R
Sbjct: 131 TTRRLTHIPANLLTDMRNLSHLELRAN-IEEMPSHLFDDLENLESIEFGSNKLRQMPRGI 189
Query: 306 FLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELN----NCGLTRLN 350
F KM LK L L+ N+L+++ G+F LT L + L+ +C R++
Sbjct: 190 FGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 238
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 12/120 (10%)
Query: 84 FDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQN--KLKSHIDWTLVLGNLGKLD 141
D L L+ LT+I + ++ +L LEL N ++ SH+ +L L+
Sbjct: 119 LDRLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELRANIEEMPSHL-----FDDLENLE 173
Query: 142 TLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDL-----DVATTLGQNLVHLDSLDLS 196
+++ + + +P +F L+ LNLA N+L + D T+L + +H + D S
Sbjct: 174 SIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 233
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 281 LLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLE 340
LL+ + +L HL++ +N++ + F + +L+++ NKL + G+F + L L
Sbjct: 142 LLTDMRNLSHLEL-RANIEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLN 200
Query: 341 LNNCGLTRLNETVFHENYTYPDLEELRLSGNP 372
L + L + + +F L+++ L NP
Sbjct: 201 LASNQLKSVPDGIFDR---LTSLQKIWLHTNP 229
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 52 LSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNL 111
L+ I T++ L+ L+L N + + +FD L +LE + L + F +
Sbjct: 135 LTHIPANLLTDMRNLSHLELRAN-IEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKM 193
Query: 112 NHLKTLELSQNKLKSHID 129
LK L L+ N+LKS D
Sbjct: 194 PKLKQLNLASNQLKSVPD 211
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 40 RSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCN 99
R+L +L ++ + ++ F +L L ++ N LR + G+F + L+ L L
Sbjct: 147 RNLSHLELRA-NIEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQ 205
Query: 100 LTYISPSAFDNLNHLKTLELSQN 122
L + FD L L+ + L N
Sbjct: 206 LKSVPDGIFDRLTSLQKIWLHTN 228
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 76/160 (47%), Gaps = 7/160 (4%)
Query: 218 LYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDA 277
L+LS N L L+ L P T+L +L+L C L++L + L LD+SHN L +
Sbjct: 36 LHLSENLLYTFSLA-TLMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHNQL-QS 91
Query: 278 FTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLS 337
L L +L LD+ ++ L + + L+ L L GN+L+TL GL L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 338 VLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLP 377
L L N LT L + + +L+ L L N L+ +P
Sbjct: 152 KLSLANNQLTELPAGLLN---GLENLDTLLLQENSLYTIP 188
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 81/187 (43%), Gaps = 12/187 (6%)
Query: 144 DLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGP 203
D RQ ++ LP ++ + T L +L+EN L +AT + L L+L C L
Sbjct: 18 DKRQ--LTALPPDLPKDTTIL---HLSENLLYTFSLATLMPY--TRLTQLNLDRCELTK- 69
Query: 204 LSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTC 263
L D + L TL LS N L + L + + L L L + L+ LP
Sbjct: 70 LQVDGTLPV--LGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125
Query: 264 LQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLE 323
LQEL + N L LL+P LE L + + L + + +L TL+L N L
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY 185
Query: 324 TLESGLF 330
T+ G F
Sbjct: 186 TIPKGFF 192
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
Query: 17 PGLITINLNANPIQ--PVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGN 74
P L T++L+ N +Q P+ G L A ++L + L+ + L L +L L GN
Sbjct: 77 PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR--LTSLPLGALRGLGELQELYLKGN 134
Query: 75 PLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKL 124
L+ + PG+ P LE L L LT + + L +L TL L +N L
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 80/228 (35%), Gaps = 44/228 (19%)
Query: 315 LILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLH 374
L LS N L T T L+ L L+ C LT+L + T P L L LS N L
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL-----QVDGTLPVLGTLDLSHNQLQ 90
Query: 375 VLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPT 434
LP + T+ + +F+ L L + E L+EL L GN L LP
Sbjct: 91 SLPLLGQTLPALTV---LDVSFNRLTSLPLGALRGLGE------LQELYLKGNELKTLPP 141
Query: 435 GNXXXXXXXXXXXXXXXXCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFXXXXX 494
G ++ LP + N N+ +L L N+L + F
Sbjct: 142 G--LLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF------- 192
Query: 495 XXXXXXXXXXXXTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEW 542
+H+ P H GNPW C+C I W
Sbjct: 193 -----------GSHLLPFAFLH----------GNPWLCNCEILYFRRW 219
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 71/177 (40%), Gaps = 27/177 (15%)
Query: 69 LDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSH- 127
L LS N L P T L L L+RC LT + L L TL+LS N+L+S
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHNQLQSLP 93
Query: 128 -IDWTL-------------------VLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNL 167
+ TL L LG+L L L+ + + LP + L L
Sbjct: 94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 168 NLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNP 224
+LA N+L +L L L +LD+L L L F + L +L GNP
Sbjct: 154 SLANNQLTELPAG--LLNGLENLDTLLLQENSLYT--IPKGFFGSHLLPFAFLHGNP 206
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 86/288 (29%), Positives = 134/288 (46%), Gaps = 58/288 (20%)
Query: 52 LSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNL 111
++ I+P NLT LN+L+LS N + I LTSL+ L + +T + P A NL
Sbjct: 119 ITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFSSNQVTDLKPLA--NL 172
Query: 112 NHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNL-PDNVFANNTWLRNLNLA 170
L+ L++S NK+ S I VL L L++L + IS++ P + N L L+L
Sbjct: 173 TTLERLDISSNKV-SDIS---VLAKLTNLESLIATNNQISDITPLGILTN---LDELSLN 225
Query: 171 ENELIDLDVATTLGQNLVHLDSLDLSNCHLK--GPLSEDAFVNATKLRTLYLSGNPLSAA 228
N+L D+ + L +L LDL+N + PLS TKL L L N +S
Sbjct: 226 GNQLKDIGTLAS----LTNLTDLDLANNQISNLAPLS-----GLTKLTELKLGANQIS-- 274
Query: 229 DLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESL 288
+ PL L T L L+++ N L D + +S L++L
Sbjct: 275 ----NISPLAGL---------------------TALTNLELNENQLEDI--SPISNLKNL 307
Query: 289 EHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHL 336
+L + ++N+ IS + +T L+ L S NK+ + S NLT++
Sbjct: 308 TYLTLYFNNISDISPVS--SLTKLQRLFFSNNKVSDVSS--LANLTNI 351
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 37/71 (52%)
Query: 59 FFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLE 118
F LT L KL LS N ++ + GVFD LT L L L+ L + FD L LK L
Sbjct: 47 VFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106
Query: 119 LSQNKLKSHID 129
L N+LKS D
Sbjct: 107 LDTNQLKSVPD 117
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 242 RLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRI 301
RL L + L LP F + T L +L +S N + + L L L + + LQ +
Sbjct: 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL 91
Query: 302 SRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELN----NCGLTRLN 350
F K+T LK L L N+L+++ G+F LT L + L+ +C R++
Sbjct: 92 PNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 144
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 287 SLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGL 346
S L++ + LQ + F K+T L L LS N++++L G+F LT L++L L+ L
Sbjct: 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88
Query: 347 TRLNETVFHENYTYPDLEELRLSGNPLHVLPD 378
L VF + L+EL L N L +PD
Sbjct: 89 QSLPNGVFDK---LTQLKELALDTNQLKSVPD 117
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 19 LITINLNANPIQPV-EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLR 77
L ++L+ N IQ + +G F L LY+ E L + F LT L +L L N L+
Sbjct: 54 LTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK 113
Query: 78 IIEPGVFDPLTSLEYLMLN 96
+ G+FD LTSL+ + L+
Sbjct: 114 SVPDGIFDRLTSLQKIWLH 132
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 6/124 (4%)
Query: 249 GLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLK 308
GL+ +P T L++ N L + L L L + + +Q + F K
Sbjct: 18 GLTSVPTGIPSSAT---RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDK 74
Query: 309 MTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRL 368
+T L L L NKL++L +G+F LT L L L+ L + + +F L+++ L
Sbjct: 75 LTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDR---LTSLQKIWL 131
Query: 369 SGNP 372
NP
Sbjct: 132 HTNP 135
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
Query: 22 INLNANPIQPV-EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIE 80
+ L +N +Q + G F L L + + + + F LT L L L N L+ +
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP 92
Query: 81 PGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQN 122
GVFD LT L+ L L+ L + FD L L+ + L N
Sbjct: 93 NGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 51/112 (45%), Gaps = 5/112 (4%)
Query: 117 LELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELID 176
LEL NKL+S V L +L L L Q+ I +LPD VF T L L L EN+L
Sbjct: 33 LELESNKLQSLPHG--VFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 177 LDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAA 228
L + L L L L LK + + F T L+ ++L NP +
Sbjct: 91 L--PNGVFDKLTQLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCS 139
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 67/134 (50%), Gaps = 5/134 (3%)
Query: 243 LSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRIS 302
L L N ++ + + R LQ L ++ N + S L SLEHLD+ Y+ L +S
Sbjct: 57 LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS 116
Query: 303 RSTFLKMTSLKTLILSGNKLETL-ESGLFQNLTHLSVLELNNCG-LTRLNETVFHENYTY 360
S F ++SL L L GN +TL E+ LF +LT L +L + N T++ F T+
Sbjct: 117 SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF-AGLTF 175
Query: 361 PDLEELRLSGNPLH 374
LEEL + + L
Sbjct: 176 --LEELEIDASDLQ 187
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 286 ESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCG 345
E+++ LD+ + + IS S + +L+ L+L+ N + T+E F +L L L+L+
Sbjct: 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111
Query: 346 LTRLNETVFHENYTYPDLEELRLSGNPLHVLPDST 380
L+ L+ + F L L L GNP L +++
Sbjct: 112 LSNLSSSWFK---PLSSLTFLNLLGNPYKTLGETS 143
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 75/305 (24%), Positives = 125/305 (40%), Gaps = 48/305 (15%)
Query: 72 SGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWT 131
S L I G+ + + SL+ L+ +TYIS S +L+ L L+ N + + + +
Sbjct: 39 SSGSLNSIPSGLTEAVKSLD---LSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS 95
Query: 132 LVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLD 191
+LG L+ LDL + +SNL + F + L LNL N L T+L +L L
Sbjct: 96 F--SSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLG-ETSLFSHLTKLQ 152
Query: 192 SLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSL---RNC 248
L + N + F T L L + + L + + +LK + + L L ++
Sbjct: 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE-PKSLKSIQNVSHLILHMKQHI 211
Query: 249 GLSRLPANTFHRFTCLQ----ELDISH---------NPLIDAFTALLSPLESLEHLDMGY 295
L + + CL+ +LD H N LI FT +
Sbjct: 212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFT---------------F 256
Query: 296 SNLQRISRSTFLKM------TSLKTLILSGNKLETLESGLFQNLTHLSVLELN----NCG 345
N++ S F M + L L S N+L+++ G+F LT L + L+ +C
Sbjct: 257 RNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316
Query: 346 LTRLN 350
R++
Sbjct: 317 CPRID 321
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 91/228 (39%), Gaps = 9/228 (3%)
Query: 52 LSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYL-MLNRCNLTYISPSAFDN 110
++ I F++L +L LDLS N L + F PL+SL +L +L T S F +
Sbjct: 88 INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSH 147
Query: 111 LNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLA 170
L L+ L + + I G L L+ L++ S + + + + +L L
Sbjct: 148 LTKLQILRVGNMDTFTKIQRKDFAG-LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH 206
Query: 171 ENE---LIDLDVATTLGQNLVHLDSLDLSNCHLK--GPLSEDAFVNATKLRTLYLSGNPL 225
+ L+++ V T + L DL H ++ + R + ++ L
Sbjct: 207 MKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL 266
Query: 226 SAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNP 273
+ L ++ L L L +P F R T LQ++ + NP
Sbjct: 267 --FQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/446 (21%), Positives = 176/446 (39%), Gaps = 85/446 (19%)
Query: 18 GLITINLNANPIQPV-EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPL 76
+ +++L+ N I + G +L L ++ ++ I F +L +L LDLS N L
Sbjct: 53 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 112
Query: 77 RIIEPGVFDPLTSLEYL-MLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLG 135
+ F PL+SL+YL ++ T S F NL +L+TL + + S I +
Sbjct: 113 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR-RIDFA 171
Query: 136 NLGKLDTLDLRQSGISN------------------LPDNVFANNTW-----------LRN 166
L L+ L+++ + N L ++ F + LR+
Sbjct: 172 GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 231
Query: 167 LNLAENELIDLDVATT------------------------LGQNLVHLDSLDLSNCHLKG 202
NLA + L V L + ++ L ++ +C L G
Sbjct: 232 TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 291
Query: 203 ----------PLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSR 252
+SE V +R L++ L DLS L K+ R+++ N +
Sbjct: 292 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYL-FYDLSTVYSLLEKVKRITVENSKVFL 350
Query: 253 LPANTFHRFTCLQELDISHNPLIDAF---TALLSPLESLEHLDMGYSNLQRISRS--TFL 307
+P + L+ LD+S N +++ + +A SL+ L + ++L+ + ++ L
Sbjct: 351 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL 410
Query: 308 KMTSLKTLILSGNKLETL-------ESGLFQNLTHLSVLELNNC------GLTRLNETVF 354
+ +L +L +S N + E F NL+ + + C L N +
Sbjct: 411 TLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLD 470
Query: 355 HENYTYPDLEELRLSGNPLHVLPDST 380
+ P L+EL +S N L LPD++
Sbjct: 471 SFSLFLPRLQELYISRNKLKTLPDAS 496
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 52/101 (51%), Gaps = 4/101 (3%)
Query: 277 AFTALLSPL-ESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTH 335
+FT++ S L +++ LD+ ++ + I +L+ LIL +++ T+E F +L
Sbjct: 42 SFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGS 101
Query: 336 LSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVL 376
L L+L++ L+ L+ + F L+ L L GNP L
Sbjct: 102 LEHLDLSDNHLSSLSSSWFGP---LSSLKYLNLMGNPYQTL 139
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 118/261 (45%), Gaps = 62/261 (23%)
Query: 133 VLGNLGKLDTLDLRQSGISNLP-----DNVFANNTWLRNLNLAENELIDLDVATTLGQNL 187
V+ LGK++T+ +R+ I V++ ++ + + EN + L V + Q+L
Sbjct: 302 VVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV-ENSKVFL-VPCSFSQHL 359
Query: 188 VHLDSLDLS-NCHLKGPLSEDAFVNA-TKLRTLYLSGNPLSA----ADLSVALKPLTKLH 241
L+ LDLS N ++ L A A L+TL LS N L + ++ + LK LT L
Sbjct: 360 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSL- 418
Query: 242 RLSLRNCGLSRLPANTFH------------RF------------TC----LQELDISHNP 273
+SR NTFH RF TC L+ LD+S+N
Sbjct: 419 -------DISR---NTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNN 468
Query: 274 LIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNL 333
L D+F+ L L+ L + + L+ + ++ + L + ++ N+L+++ G+F L
Sbjct: 469 L-DSFSLFL---PRLQELYISRNKLKTLPDASLFPV--LLVMKIASNQLKSVPDGIFDRL 522
Query: 334 THLSVLELN----NCGLTRLN 350
T L + L+ +C R++
Sbjct: 523 TSLQKIWLHTNPWDCSCPRID 543
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 67/134 (50%), Gaps = 5/134 (3%)
Query: 243 LSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRIS 302
L L N ++ + + R LQ L ++ N + S L SLEHLD+ Y+ L +S
Sbjct: 31 LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS 90
Query: 303 RSTFLKMTSLKTLILSGNKLETL-ESGLFQNLTHLSVLELNNCG-LTRLNETVFHENYTY 360
S F ++SL L L GN +TL E+ LF +LT L +L + N T++ F T+
Sbjct: 91 SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF-AGLTF 149
Query: 361 PDLEELRLSGNPLH 374
LEEL + + L
Sbjct: 150 --LEELEIDASDLQ 161
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 75/357 (21%), Positives = 141/357 (39%), Gaps = 48/357 (13%)
Query: 51 TLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDN 110
T +KI + F LT L +L++ + L+ EP + ++ +L+L+ + D
Sbjct: 135 TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV 194
Query: 111 LNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLA 170
+ ++ LEL LDT S +S N RN+ +
Sbjct: 195 TSSVECLELRDT----------------DLDTFHF--SELSTGETNSLIKKFTFRNVKIT 236
Query: 171 ENELIDLDVATTLGQNLVHLDSLDLSNCHLKG-----PLSEDAFVNATKLRTLYLSGNPL 225
+ L V L Q + L L+ +C L G D ++ K+ TL + +
Sbjct: 237 DESL--FQVMKLLNQ-ISGLLELEFDDCTLNGVGNFRASDNDRVIDPGKVETLTIRRLHI 293
Query: 226 SA----ADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAF--- 278
DLS ++ R+++ N + +P L+ LD+S N +++ +
Sbjct: 294 PRFYLFYDLSTLYSLTERVKRITVENSKVFLVPCLLSQHLKSLEYLDLSENLMVEEYLKN 353
Query: 279 TALLSPLESLEHLDMGYSNLQRISRS--TFLKMTSLKTLILSGNKLETL-------ESGL 329
+A SL+ L + ++L + ++ T L + +L + +S N ++ E
Sbjct: 354 SACEDAWPSLQTLILRQNHLASLEKTGETLLTLKNLTNIDISKNSFHSMPETCQWPEKMK 413
Query: 330 FQNLTHLSVLELNNC------GLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDST 380
+ NL+ + + C L N + + P L+EL +S N L LPD++
Sbjct: 414 YLNLSSTRIHSVTGCIPKTLEILDVSNNNLNLFSLNLPQLKELYISRNKLMTLPDAS 470
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 286 ESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCG 345
E+++ LD+ + + IS S + +L+ L+L+ N + T+E F +L L L+L+
Sbjct: 26 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 85
Query: 346 LTRLNETVFHENYTYPDLEELRLSGNPLHVLPDST 380
L+ L+ + F L L L GNP L +++
Sbjct: 86 LSNLSSSWFK---PLSSLTFLNLLGNPYKTLGETS 117
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 65/136 (47%), Gaps = 1/136 (0%)
Query: 243 LSLRNCGLSRLPAN-TFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRI 301
L L + LSRL A T R T L L +SHN L + P+ +L +LD+ ++L +
Sbjct: 44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL 103
Query: 302 SRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYP 361
F + +L+ L+L N + ++ F+++ L L L+ ++R + + P
Sbjct: 104 DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLP 163
Query: 362 DLEELRLSGNPLHVLP 377
L L LS N L LP
Sbjct: 164 KLMLLDLSSNKLKKLP 179
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 1/104 (0%)
Query: 52 LSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNL 111
L+ I+ + F + L LDLS N L ++ +F L +LE L+L ++ + +AF+++
Sbjct: 76 LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDM 135
Query: 112 NHLKTLELSQNKLKSHIDWTLVLGN-LGKLDTLDLRQSGISNLP 154
L+ L LSQN++ + GN L KL LDL + + LP
Sbjct: 136 AQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 3/135 (2%)
Query: 218 LYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDA 277
L LS N LS LT LH L L + L+ + + F L+ LD+S N L
Sbjct: 44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL 103
Query: 278 FTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQN---LT 334
L S L++LE L + +++ + R+ F M L+ L LS N++ L ++ L
Sbjct: 104 DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLP 163
Query: 335 HLSVLELNNCGLTRL 349
L +L+L++ L +L
Sbjct: 164 KLMLLDLSSNKLKKL 178
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 67/141 (47%), Gaps = 8/141 (5%)
Query: 117 LELSQNKL-KSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELI 175
L+LS N L + +WT L L +L L + ++ + F LR L+L+ N L
Sbjct: 44 LDLSHNNLSRLRAEWTPT--RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH 101
Query: 176 DLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLS--AADLSVA 233
LD L +L L+ L L N H+ + +AF + +L+ LYLS N +S +L
Sbjct: 102 TLD--EFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKD 158
Query: 234 LKPLTKLHRLSLRNCGLSRLP 254
L KL L L + L +LP
Sbjct: 159 GNKLPKLMLLDLSSNKLKKLP 179
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 133/288 (46%), Gaps = 58/288 (20%)
Query: 52 LSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNL 111
++ I+P NLT LN+L+LS N + I LTSL+ L + +T + P A NL
Sbjct: 119 ITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFSSNQVTDLKPLA--NL 172
Query: 112 NHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNL-PDNVFANNTWLRNLNLA 170
L+ L++S NK+ S I VL L L++L + IS++ P + N L L+L
Sbjct: 173 TTLERLDISSNKV-SDIS---VLAKLTNLESLIATNNQISDITPLGILTN---LDELSLN 225
Query: 171 ENELIDLDVATTLGQNLVHLDSLDLSNCHLK--GPLSEDAFVNATKLRTLYLSGNPLSAA 228
N+L D+ + L +L LDL+N + PLS TKL L L N +S
Sbjct: 226 GNQLKDIGTLAS----LTNLTDLDLANNQISNLAPLS-----GLTKLTELKLGANQIS-- 274
Query: 229 DLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESL 288
+ PL L T L L+++ N L D + +S L++L
Sbjct: 275 ----NISPLAGL---------------------TALTNLELNENQLEDI--SPISNLKNL 307
Query: 289 EHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHL 336
+L + ++N+ IS + +T L+ L NK+ + S NLT++
Sbjct: 308 TYLTLYFNNISDISPVS--SLTKLQRLFFYNNKVSDVSS--LANLTNI 351
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 97/446 (21%), Positives = 176/446 (39%), Gaps = 85/446 (19%)
Query: 18 GLITINLNANPIQPV-EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPL 76
+ +++L+ N I + G +L L ++ ++ I F +L +L LDLS N L
Sbjct: 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86
Query: 77 RIIEPGVFDPLTSLEYL-MLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLG 135
+ F PL+SL+YL ++ T S F NL +L+TL + + S I +
Sbjct: 87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR-RIDFA 145
Query: 136 NLGKLDTLDLRQSGISN------------------LPDNVFANNTW-----------LRN 166
L L+ L+++ + N L ++ F + LR+
Sbjct: 146 GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205
Query: 167 LNLAENELIDLDVATT------------------------LGQNLVHLDSLDLSNCHLKG 202
NLA + L V L + ++ L ++ +C L G
Sbjct: 206 TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265
Query: 203 ----------PLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSR 252
+SE V +R L++ L DLS L K+ R+++ N +
Sbjct: 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYL-FYDLSTVYSLLEKVKRITVENSKVFL 324
Query: 253 LPANTFHRFTCLQELDISHNPLIDAF---TALLSPLESLEHLDMGYSNLQRISRS--TFL 307
+P + L+ LD+S N +++ + +A SL+ L + ++L+ + ++ L
Sbjct: 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL 384
Query: 308 KMTSLKTLILSGNKLETL-------ESGLFQNLTHLSVLELNNC------GLTRLNETVF 354
+ +L +L +S N + E F NL+ + + C L N +
Sbjct: 385 TLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLD 444
Query: 355 HENYTYPDLEELRLSGNPLHVLPDST 380
+ P L+EL +S N L LPD++
Sbjct: 445 SFSLFLPRLQELYISRNKLKTLPDAS 470
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 52/101 (51%), Gaps = 4/101 (3%)
Query: 277 AFTALLSPL-ESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTH 335
+FT++ S L +++ LD+ ++ + I +L+ LIL +++ T+E F +L
Sbjct: 16 SFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGS 75
Query: 336 LSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVL 376
L L+L++ L+ L+ + F L+ L L GNP L
Sbjct: 76 LEHLDLSDNHLSSLSSSWFGP---LSSLKYLNLMGNPYQTL 113
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 118/261 (45%), Gaps = 62/261 (23%)
Query: 133 VLGNLGKLDTLDLRQSGISNLP-----DNVFANNTWLRNLNLAENELIDLDVATTLGQNL 187
V+ LGK++T+ +R+ I V++ ++ + + EN + L V + Q+L
Sbjct: 276 VVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV-ENSKVFL-VPCSFSQHL 333
Query: 188 VHLDSLDLS-NCHLKGPLSEDAFVNA-TKLRTLYLSGNPLSA----ADLSVALKPLTKLH 241
L+ LDLS N ++ L A A L+TL LS N L + ++ + LK LT L
Sbjct: 334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSL- 392
Query: 242 RLSLRNCGLSRLPANTFH------------RF------------TC----LQELDISHNP 273
+SR NTFH RF TC L+ LD+S+N
Sbjct: 393 -------DISR---NTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNN 442
Query: 274 LIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNL 333
L D+F+ L L+ L + + L+ + ++ + L + +S N+L+++ G+F L
Sbjct: 443 L-DSFSLFL---PRLQELYISRNKLKTLPDASLFPV--LLVMKISRNQLKSVPDGIFDRL 496
Query: 334 THLSVLELN----NCGLTRLN 350
T L + L+ +C R++
Sbjct: 497 TSLQKIWLHTNPWDCSCPRID 517
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 133/288 (46%), Gaps = 58/288 (20%)
Query: 52 LSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNL 111
++ I+P NLT LN+L+LS N + I LTSL+ L + +T + P A NL
Sbjct: 119 ITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFSSNQVTDLKPLA--NL 172
Query: 112 NHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNL-PDNVFANNTWLRNLNLA 170
L+ L++S NK+ S I VL L L++L + IS++ P + N L L+L
Sbjct: 173 TTLERLDISSNKV-SDIS---VLAKLTNLESLIATNNQISDITPLGILTN---LDELSLN 225
Query: 171 ENELIDLDVATTLGQNLVHLDSLDLSNCHLK--GPLSEDAFVNATKLRTLYLSGNPLSAA 228
N+L D+ + L +L LDL+N + PLS TKL L L N +S
Sbjct: 226 GNQLKDIGTLAS----LTNLTDLDLANNQISNLAPLS-----GLTKLTELKLGANQIS-- 274
Query: 229 DLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESL 288
+ PL L T L L+++ N L D + +S L++L
Sbjct: 275 ----NISPLAGL---------------------TALTNLELNENQLEDI--SPISNLKNL 307
Query: 289 EHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHL 336
+L + ++N+ IS + +T L+ L NK+ + S NLT++
Sbjct: 308 TYLTLYFNNISDISPVS--SLTKLQRLFFYNNKVSDVSS--LANLTNI 351
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 75/160 (46%), Gaps = 7/160 (4%)
Query: 218 LYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDA 277
L+LS N L L+ L P T+L +L+L L++L + L LD+SHN L +
Sbjct: 36 LHLSENLLYTFSLAT-LMPYTRLTQLNLDRAELTKLQVDG--TLPVLGTLDLSHNQL-QS 91
Query: 278 FTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLS 337
L L +L LD+ ++ L + + L+ L L GN+L+TL GL L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 338 VLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLP 377
L L N LT L + + +L+ L L N L+ +P
Sbjct: 152 KLSLANNNLTELPAGLLN---GLENLDTLLLQENSLYTIP 188
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Query: 17 PGLITINLNANPIQ--PVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGN 74
P L T++L+ N +Q P+ G L A ++L + L+ + L L +L L GN
Sbjct: 77 PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR--LTSLPLGALRGLGELQELYLKGN 134
Query: 75 PLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKL 124
L+ + PG+ P LE L L NLT + + L +L TL L +N L
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 72/167 (43%), Gaps = 13/167 (7%)
Query: 167 LNLAENELIDLDVATTLGQN---LVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGN 223
L+L+EN L +AT + ++LD +L+ + G L L TL LS N
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLP--------VLGTLDLSHN 87
Query: 224 PLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLS 283
L + L + + L L L + L+ LP LQEL + N L LL+
Sbjct: 88 QLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT 145
Query: 284 PLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLF 330
P LE L + +NL + + +L TL+L N L T+ G F
Sbjct: 146 PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 80/230 (34%), Gaps = 48/230 (20%)
Query: 315 LILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLH 374
L LS N L T T L+ L L+ LT+L + T P L L LS N L
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-----QVDGTLPVLGTLDLSHNQLQ 90
Query: 375 VLPDSTKQYSMRTIP--TQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVL 432
LP +T+P T + +F+ L L + E L+EL L GN L L
Sbjct: 91 SLP-----LLGQTLPALTVLDVSFNRLTSLPLGALRGLGE------LQELYLKGNELKTL 139
Query: 433 PTGNXXXXXXXXXXXXXXXXCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFXXX 492
P G + LP + N N+ +L L N+L + F
Sbjct: 140 PPG--LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF----- 192
Query: 493 XXXXXXXXXXXXXXTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEW 542
+H+ P H GNPW C+C I W
Sbjct: 193 -------------GSHLLPFAFLH----------GNPWLCNCEILYFRRW 219
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 69/177 (38%), Gaps = 27/177 (15%)
Query: 69 LDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSH- 127
L LS N L P T L L L+R LT + L L TL+LS N+L+S
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG--TLPVLGTLDLSHNQLQSLP 93
Query: 128 -IDWTL-------------------VLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNL 167
+ TL L LG+L L L+ + + LP + L L
Sbjct: 94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 168 NLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNP 224
+LA N L +L L L +LD+L L L F + L +L GNP
Sbjct: 154 SLANNNLTELPAG--LLNGLENLDTLLLQENSLYT--IPKGFFGSHLLPFAFLHGNP 206
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 75/160 (46%), Gaps = 7/160 (4%)
Query: 218 LYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDA 277
L+LS N L L+ L P T+L +L+L L++L + L LD+SHN L +
Sbjct: 36 LHLSENLLYTFSLAT-LMPYTRLTQLNLDRAELTKLQVDG--TLPVLGTLDLSHNQL-QS 91
Query: 278 FTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLS 337
L L +L LD+ ++ L + + L+ L L GN+L+TL GL L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 338 VLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLP 377
L L N LT L + + +L+ L L N L+ +P
Sbjct: 152 KLSLANNNLTELPAGLLN---GLENLDTLLLQENSLYTIP 188
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Query: 17 PGLITINLNANPIQ--PVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGN 74
P L T++L+ N +Q P+ G L A ++L + L+ + L L +L L GN
Sbjct: 77 PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR--LTSLPLGALRGLGELQELYLKGN 134
Query: 75 PLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKL 124
L+ + PG+ P LE L L NLT + + L +L TL L +N L
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 72/167 (43%), Gaps = 13/167 (7%)
Query: 167 LNLAENELIDLDVATTLGQN---LVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGN 223
L+L+EN L +AT + ++LD +L+ + G L L TL LS N
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLP--------VLGTLDLSHN 87
Query: 224 PLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLS 283
L + L + + L L L + L+ LP LQEL + N L LL+
Sbjct: 88 QLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT 145
Query: 284 PLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLF 330
P LE L + +NL + + +L TL+L N L T+ G F
Sbjct: 146 PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 80/230 (34%), Gaps = 48/230 (20%)
Query: 315 LILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLH 374
L LS N L T T L+ L L+ LT+L + T P L L LS N L
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-----QVDGTLPVLGTLDLSHNQLQ 90
Query: 375 VLPDSTKQYSMRTIP--TQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVL 432
LP +T+P T + +F+ L L + E L+EL L GN L L
Sbjct: 91 SLP-----LLGQTLPALTVLDVSFNRLTSLPLGALRGLGE------LQELYLKGNELKTL 139
Query: 433 PTGNXXXXXXXXXXXXXXXXCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFXXX 492
P G + LP + N N+ +L L N+L + F
Sbjct: 140 PPG--LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF----- 192
Query: 493 XXXXXXXXXXXXXXTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEW 542
+H+ P H GNPW C+C I W
Sbjct: 193 -------------GSHLLPFAFLH----------GNPWLCNCEILYFRRW 219
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 69/177 (38%), Gaps = 27/177 (15%)
Query: 69 LDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSH- 127
L LS N L P T L L L+R LT + L L TL+LS N+L+S
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG--TLPVLGTLDLSHNQLQSLP 93
Query: 128 -IDWTL-------------------VLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNL 167
+ TL L LG+L L L+ + + LP + L L
Sbjct: 94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 168 NLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNP 224
+LA N L +L L L +LD+L L L F + L +L GNP
Sbjct: 154 SLANNNLTELPAG--LLNGLENLDTLLLQENSLY--TIPKGFFGSHLLPFAFLHGNP 206
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 75/160 (46%), Gaps = 7/160 (4%)
Query: 218 LYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDA 277
L+LS N L L+ L P T+L +L+L L++L + L LD+SHN L +
Sbjct: 36 LHLSENLLYTFSLAT-LMPYTRLTQLNLDRAELTKLQVDG--TLPVLGTLDLSHNQL-QS 91
Query: 278 FTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLS 337
L L +L LD+ ++ L + + L+ L L GN+L+TL GL L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 338 VLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLP 377
L L N LT L + + +L+ L L N L+ +P
Sbjct: 152 KLSLANNNLTELPAGLLN---GLENLDTLLLQENSLYTIP 188
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Query: 17 PGLITINLNANPIQ--PVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGN 74
P L T++L+ N +Q P+ G L A ++L + L+ + L L +L L GN
Sbjct: 77 PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR--LTSLPLGALRGLGELQELYLKGN 134
Query: 75 PLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKL 124
L+ + PG+ P LE L L NLT + + L +L TL L +N L
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 72/167 (43%), Gaps = 13/167 (7%)
Query: 167 LNLAENELIDLDVATTLGQN---LVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGN 223
L+L+EN L +AT + ++LD +L+ + G L L TL LS N
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLP--------VLGTLDLSHN 87
Query: 224 PLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLS 283
L + L + + L L L + L+ LP LQEL + N L LL+
Sbjct: 88 QLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT 145
Query: 284 PLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLF 330
P LE L + +NL + + +L TL+L N L T+ G F
Sbjct: 146 PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 80/230 (34%), Gaps = 48/230 (20%)
Query: 315 LILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLH 374
L LS N L T T L+ L L+ LT+L + T P L L LS N L
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-----QVDGTLPVLGTLDLSHNQLQ 90
Query: 375 VLPDSTKQYSMRTIP--TQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVL 432
LP +T+P T + +F+ L L + E L+EL L GN L L
Sbjct: 91 SLP-----LLGQTLPALTVLDVSFNRLTSLPLGALRGLGE------LQELYLKGNELKTL 139
Query: 433 PTGNXXXXXXXXXXXXXXXXCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFXXX 492
P G + LP + N N+ +L L N+L + F
Sbjct: 140 PPG--LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF----- 192
Query: 493 XXXXXXXXXXXXXXTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEW 542
+H+ P H GNPW C+C I W
Sbjct: 193 -------------GSHLLPFAFLH----------GNPWLCNCEILYFRRW 219
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 69/177 (38%), Gaps = 27/177 (15%)
Query: 69 LDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSH- 127
L LS N L P T L L L+R LT + L L TL+LS N+L+S
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG--TLPVLGTLDLSHNQLQSLP 93
Query: 128 -IDWTL-------------------VLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNL 167
+ TL L LG+L L L+ + + LP + L L
Sbjct: 94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 168 NLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNP 224
+LA N L +L L L +LD+L L L F + L +L GNP
Sbjct: 154 SLANNNLTELPAG--LLNGLENLDTLLLQENSLY--TIPKGFFGSHLLPFAFLHGNP 206
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 40/78 (51%)
Query: 45 LYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYIS 104
L++ ++K+ P F +L L +L + N L I GVFD LT L L LN +L I
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP 97
Query: 105 PSAFDNLNHLKTLELSQN 122
AFDNL L + L N
Sbjct: 98 RGAFDNLKSLTHIYLYNN 115
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 35/63 (55%)
Query: 64 TTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNK 123
T +L L+ N + +EPGVFD L +L+ L N LT I FD L L L+L+ N
Sbjct: 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92
Query: 124 LKS 126
LKS
Sbjct: 93 LKS 95
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 24 LNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPG 82
LN N I +E G F +L LY L+ I F LT L +LDL+ N L+ I G
Sbjct: 40 LNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRG 99
Query: 83 VFDPLTSLEYLML 95
FD L SL ++ L
Sbjct: 100 AFDNLKSLTHIYL 112
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 38/86 (44%)
Query: 238 TKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSN 297
T RL L N +++L F LQ+L + N L T + L L LD+ ++
Sbjct: 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92
Query: 298 LQRISRSTFLKMTSLKTLILSGNKLE 323
L+ I R F + SL + L N +
Sbjct: 93 LKSIPRGAFDNLKSLTHIYLYNNPWD 118
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%)
Query: 244 SLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISR 303
+L NC RL + T Q L +++N + + L +L+ L + L I
Sbjct: 15 TLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPT 74
Query: 304 STFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNN 343
F K+T L L L+ N L+++ G F NL L+ + L N
Sbjct: 75 GVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYN 114
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 34/66 (51%)
Query: 289 EHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTR 348
+ L + + + ++ F + +L+ L + NKL + +G+F LT L+ L+LN+ L
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95
Query: 349 LNETVF 354
+ F
Sbjct: 96 IPRGAF 101
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 86/288 (29%), Positives = 133/288 (46%), Gaps = 59/288 (20%)
Query: 52 LSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNL 111
++ I+P NLT LN+L+LS N + I LTSL+ L +T + P A NL
Sbjct: 119 ITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFGN-QVTDLKPLA--NL 171
Query: 112 NHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNL-PDNVFANNTWLRNLNLA 170
L+ L++S NK+ S I VL L L++L + IS++ P + N L L+L
Sbjct: 172 TTLERLDISSNKV-SDIS---VLAKLTNLESLIATNNQISDITPLGILTN---LDELSLN 224
Query: 171 ENELIDLDVATTLGQNLVHLDSLDLSNCHLK--GPLSEDAFVNATKLRTLYLSGNPLSAA 228
N+L D+ + L +L LDL+N + PLS TKL L L N +S
Sbjct: 225 GNQLKDIGTLAS----LTNLTDLDLANNQISNLAPLS-----GLTKLTELKLGANQIS-- 273
Query: 229 DLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESL 288
+ PL L T L L+++ N L D + +S L++L
Sbjct: 274 ----NISPLAGL---------------------TALTNLELNENQLEDI--SPISNLKNL 306
Query: 289 EHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHL 336
+L + ++N+ IS + +T L+ L S NK+ + S NLT++
Sbjct: 307 TYLTLYFNNISDISPVS--SLTKLQRLFFSNNKVSDVSS--LANLTNI 350
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 133/288 (46%), Gaps = 59/288 (20%)
Query: 52 LSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNL 111
++ I+P NLT LN+L+LS N + I LTSL+ L +T + P A NL
Sbjct: 123 ITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFGN-QVTDLKPLA--NL 175
Query: 112 NHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNL-PDNVFANNTWLRNLNLA 170
L+ L++S NK+ S I VL L L++L + IS++ P + N L L+L
Sbjct: 176 TTLERLDISSNKV-SDIS---VLAKLTNLESLIATNNQISDITPLGILTN---LDELSLN 228
Query: 171 ENELIDLDVATTLGQNLVHLDSLDLSNCHLK--GPLSEDAFVNATKLRTLYLSGNPLSAA 228
N+L D+ + L +L LDL+N + PLS TKL L L N +S
Sbjct: 229 GNQLKDIGTLAS----LTNLTDLDLANNQISNLAPLS-----GLTKLTELKLGANQIS-- 277
Query: 229 DLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESL 288
+ PL L T L L+++ N L D + +S L++L
Sbjct: 278 ----NISPLAGL---------------------TALTNLELNENQLEDI--SPISNLKNL 310
Query: 289 EHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHL 336
+L + ++N+ IS + +T L+ L + NK+ + S NLT++
Sbjct: 311 TYLTLYFNNISDISPVS--SLTKLQRLFFANNKVSDVSS--LANLTNI 354
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Query: 17 PGLITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP 75
P L IN + N I +E GAF A + + + L + + F L +L L L N
Sbjct: 57 PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR 116
Query: 76 LRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQN 122
+ + F L+S+ L L +T ++P AFD L+ L TL L N
Sbjct: 117 ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 2/114 (1%)
Query: 59 FFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLE 118
F L L K++ S N + IE G F+ + + ++L L + F L LKTL
Sbjct: 52 IFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111
Query: 119 LSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAEN 172
L N++ + + + L + L L + I+ + F L LNL N
Sbjct: 112 LRSNRITCVGNDSFI--GLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 78/161 (48%), Gaps = 15/161 (9%)
Query: 49 ECTLSKIN--PQFFTNLTTLNKLDLSGNPLRIIEP-GVFDPLTSLEYLMLNRCNLTYISP 105
+C+ K+N P+ T +L L+ N ++E G+F L L + + +T I
Sbjct: 17 DCSNQKLNKIPEHIPQYTA--ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEE 74
Query: 106 SAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLR 165
AF+ + + + L+ N+L+ ++ + G L L TL LR + I+ + ++ F + +R
Sbjct: 75 GAFEGASGVNEILLTSNRLE-NVQHKMFKG-LESLKTLMLRSNRITCVGNDSFIGLSSVR 132
Query: 166 NLNLAENELIDLDVATTLGQNLVHLDSLDL------SNCHL 200
L+L +N++ VA L L +L+L NC+L
Sbjct: 133 LLSLYDNQIT--TVAPGAFDTLHSLSTLNLLANPFNCNCYL 171
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/41 (24%), Positives = 25/41 (60%)
Query: 507 THISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEWATREK 547
T ++P +++++ L+ NP+ C+C +A + EW +++
Sbjct: 142 TTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLRKKR 182
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%)
Query: 52 LSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNL 111
+S ++ Q F+N+T L L LS N LR I P FD L SL L L+ +++ + AF++L
Sbjct: 66 ISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDL 125
Query: 112 NHLKTLELSQNKL 124
+ L L + N L
Sbjct: 126 SALSHLAIGANPL 138
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 276 DAFTALLSPLESLEHL---DMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQN 332
+ FT + L + +HL D+ + + +S +F MT L TLILS N+L + F
Sbjct: 41 NQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDG 100
Query: 333 LTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHV 375
L L +L L+ ++ + E F++ L L + NPL+
Sbjct: 101 LKSLRLLSLHGNDISVVPEGAFND---LSALSHLAIGANPLYC 140
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 186 NLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSL 245
N HL +DLSN + LS +F N T+L TL LS N L L L LSL
Sbjct: 52 NYKHLTLIDLSNNRIST-LSNQSFSNMTQLLTLILSYNRLRCIP-PRTFDGLKSLRLLSL 109
Query: 246 RNCGLSRLPANTFHRFTCLQELDISHNPL 274
+S +P F+ + L L I NPL
Sbjct: 110 HGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 267 LDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLE 326
+D+S+N + S + L L + Y+ L+ I TF + SL+ L L GN + +
Sbjct: 59 IDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVP 118
Query: 327 SGLFQNLTHLSVLELN------NCGLTRLNETVFHENYTYPDLEELRLSG 370
G F +L+ LS L + +C + L++ V E Y P + G
Sbjct: 119 EGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSE-YKEPGIARCAGPG 167
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 19 LITINLNANPIQPVEG-AFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLR 77
L I+L+ N I + +F LL L + L I P+ F L +L L L GN +
Sbjct: 56 LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
Query: 78 IIEPGVFDPLTSLEYLMLNR------CNLTYIS 104
++ G F+ L++L +L + CN+ ++S
Sbjct: 116 VVPEGAFNDLSALSHLAIGANPLYCDCNMQWLS 148
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 38 VARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNR 97
+ R + LY+ + + P+ +N L +DLS N + + F +T L L+L+
Sbjct: 29 IPRDVTELYLDGNQFTLV-PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87
Query: 98 CNLTYISPSAFDNLNHLKTLELSQNKL 124
L I P FD L L+ L L N +
Sbjct: 88 NRLRCIPPRTFDGLKSLRLLSLHGNDI 114
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Query: 66 LNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLK 125
+ +L L GN ++ P L + L+ ++ +S +F N+ L TL LS N+L+
Sbjct: 33 VTELYLDGNQFTLV-PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91
Query: 126 SHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENEL 174
T L L L L + IS +P+ F + + L +L + N L
Sbjct: 92 CIPPRT--FDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 132/288 (45%), Gaps = 59/288 (20%)
Query: 52 LSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNL 111
++ I+P NLT LN+L+LS N + I LTSL+ L +T + P A NL
Sbjct: 124 ITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFGN-QVTDLKPLA--NL 176
Query: 112 NHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNL-PDNVFANNTWLRNLNLA 170
L+ L++S NK+ S I VL L L++L + IS++ P + N L L+L
Sbjct: 177 TTLERLDISSNKV-SDIS---VLAKLTNLESLIATNNQISDITPLGILTN---LDELSLN 229
Query: 171 ENELIDLDVATTLGQNLVHLDSLDLSNCHLK--GPLSEDAFVNATKLRTLYLSGNPLSAA 228
N+L D+ + L +L LDL+N + PLS TKL L L N +S
Sbjct: 230 GNQLKDIGTLAS----LTNLTDLDLANNQISNLAPLS-----GLTKLTELKLGANQIS-- 278
Query: 229 DLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESL 288
+ PL L T L L+++ N L D + +S L++L
Sbjct: 279 ----NISPLAGL---------------------TALTNLELNENQLEDI--SPISNLKNL 311
Query: 289 EHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHL 336
+L + ++N+ IS + +T L+ L NK+ + S NLT++
Sbjct: 312 TYLTLYFNNISDISPVS--SLTKLQRLFFYNNKVSDVSS--LANLTNI 355
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 132/288 (45%), Gaps = 59/288 (20%)
Query: 52 LSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNL 111
++ I+P NLT LN+L+LS N + I LTSL+ L +T + P A NL
Sbjct: 119 ITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFGN-QVTDLKPLA--NL 171
Query: 112 NHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNL-PDNVFANNTWLRNLNLA 170
L+ L++S NK+ S I VL L L++L + IS++ P + N L L+L
Sbjct: 172 TTLERLDISSNKV-SDIS---VLAKLTNLESLIATNNQISDITPLGILTN---LDELSLN 224
Query: 171 ENELIDLDVATTLGQNLVHLDSLDLSNCHLK--GPLSEDAFVNATKLRTLYLSGNPLSAA 228
N+L D+ + L +L LDL+N + PLS TKL L L N +S
Sbjct: 225 GNQLKDIGTLAS----LTNLTDLDLANNQISNLAPLS-----GLTKLTELKLGANQIS-- 273
Query: 229 DLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESL 288
+ PL L T L L+++ N L D + +S L++L
Sbjct: 274 ----NISPLAGL---------------------TALTNLELNENQLEDI--SPISNLKNL 306
Query: 289 EHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHL 336
+L + ++N+ IS + +T L+ L NK+ + S NLT++
Sbjct: 307 TYLTLYFNNISDISPVS--SLTKLQRLFFYNNKVSDVSS--LANLTNI 350
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 89/302 (29%), Positives = 137/302 (45%), Gaps = 33/302 (10%)
Query: 47 MQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPS 106
+Q+ +++ + Q L ++ KL ++G + I+ + LT+LEYL LN +T ISP
Sbjct: 29 LQKASVTDVVTQ--EELESITKLVVAGEKVASIQG--IEYLTNLEYLNLNGNQITDISP- 83
Query: 107 AFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRN 166
NL L L + NK+ D + L NL L L L + IS++ AN T +
Sbjct: 84 -LSNLVKLTNLYIGTNKIT---DIS-ALQNLTNLRELYLNEDNISDISP--LANLTKXYS 136
Query: 167 LNLAENE-LIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPL 225
LNL N L DL + N L+ L ++ +K N T L +L L+ N +
Sbjct: 137 LNLGANHNLSDLSPLS----NXTGLNYLTVTESKVKDV---TPIANLTDLYSLSLNYNQI 189
Query: 226 SAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPL 285
D+S L LT LH + ++ + T L L I +N + D LSPL
Sbjct: 190 E--DIS-PLASLTSLHYFTAYVNQITDITP--VANXTRLNSLKIGNNKITD-----LSPL 239
Query: 286 ESLEHLDMGYSNLQRISRSTFLK-MTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNC 344
+L L +IS +K +T LK L + N++ + + NL+ L+ L LNN
Sbjct: 240 ANLSQLTWLEIGTNQISDINAVKDLTKLKXLNVGSNQISDI--SVLNNLSQLNSLFLNNN 297
Query: 345 GL 346
L
Sbjct: 298 QL 299
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 66/136 (48%), Gaps = 8/136 (5%)
Query: 41 SLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLR--IIEPGVFDPLTSLEYLMLNRC 98
SL+ L + + + K+ F+ L +N +++ GNPL EPG FD L L YL ++
Sbjct: 124 SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA 182
Query: 99 NLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVF 158
LT I + LN L L NK+++ I+ +L KL L L + I + +
Sbjct: 183 KLTGIPKDLPETLNE---LHLDHNKIQA-IELEDLL-RYSKLYRLGLGHNQIRMIENGSL 237
Query: 159 ANNTWLRNLNLAENEL 174
+ LR L+L N+L
Sbjct: 238 SFLPTLRELHLDNNKL 253
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 97/225 (43%), Gaps = 36/225 (16%)
Query: 149 GISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDA 208
G+ +P + + T L +L N++ +L G L HL +L L N + + E A
Sbjct: 44 GLKAVPKEISPDTTLL---DLQNNDISELRKDDFKG--LQHLYALVLVNNKISK-IHEKA 97
Query: 209 FVNATKLRTLYLSGNPLSAADLSVALKP--LTKLHRLSLRNCGLSRLPANTFHRFTCLQE 266
F KL+ LY+S N L V + P + L L + + + ++P F +
Sbjct: 98 FSPLRKLQKLYISKNHL------VEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNC 151
Query: 267 LDISHNPLID------AFTAL-----------LSPL-----ESLEHLDMGYSNLQRISRS 304
+++ NPL + AF L L+ + E+L L + ++ +Q I
Sbjct: 152 IEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELE 211
Query: 305 TFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRL 349
L+ + L L L N++ +E+G L L L L+N L+R+
Sbjct: 212 DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV 256
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 94/218 (43%), Gaps = 10/218 (4%)
Query: 137 LGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLS 196
L L L L + IS + + F+ L+ L +++N L++ + L +LV L D
Sbjct: 77 LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE--IPPNLPSSLVELRIHD-- 132
Query: 197 NCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPAN 256
N K P + F + + + GNPL + KL+ L + L+ +P +
Sbjct: 133 NRIRKVP--KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKD 190
Query: 257 TFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLI 316
L EL + HN + L L L +G++ ++ I + + +L+ L
Sbjct: 191 LPE---TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELH 247
Query: 317 LSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVF 354
L NKL + +GL +L L V+ L+ +T++ F
Sbjct: 248 LDNNKLSRVPAGL-PDLKLLQVVYLHTNNITKVGVNDF 284
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 88/203 (43%), Gaps = 7/203 (3%)
Query: 5 HPVYNDRRNLDNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLT 64
+P+ + NL + I N + P+ A L YLY+ +S P F + +
Sbjct: 66 YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125
Query: 65 TLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKT-LELSQNK 123
TL LD S N L P L +L + + ++ P ++ + + L T + +S+N+
Sbjct: 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185
Query: 124 LKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTL 183
L I T NL +DL ++ + +F ++ + ++LA+N L L
Sbjct: 186 LTGKIPPTFANLNLA---FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGL 242
Query: 184 GQNLVHLDSLDLSNCHLKGPLSE 206
+N L+ LDL N + G L +
Sbjct: 243 SKN---LNGLDLRNNRIYGTLPQ 262
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 71/183 (38%), Gaps = 15/183 (8%)
Query: 153 LPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLS-EDAFVN 211
LP N TWL L D D T +++LDLS +L P + N
Sbjct: 28 LPTTDCCNRTWL-------GVLCDTDTQT------YRVNNLDLSGLNLPKPYPIPSSLAN 74
Query: 212 ATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISH 271
L LY+ G + A+ LT+LH L + + +S + + L LD S+
Sbjct: 75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY 134
Query: 272 NPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKT-LILSGNKLETLESGLF 330
N L +S L +L + + + ++ + L T + +S N+L F
Sbjct: 135 NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF 194
Query: 331 QNL 333
NL
Sbjct: 195 ANL 197
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 85/294 (28%), Positives = 124/294 (42%), Gaps = 13/294 (4%)
Query: 59 FFTNLTTLNKLDLSGNPLRIIEPGVFDPL--TSLEYLMLNRCNLTYISPSAFDNLNHLKT 116
F + + L LD+SGN L G F T E +LN + ++ P L L+
Sbjct: 215 FLGDCSALQHLDISGNKLS----GDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQY 270
Query: 117 LELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELI- 175
L L++NK I + G L LDL + F + + L +L L+ N
Sbjct: 271 LSLAENKFTGEIP-DFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 329
Query: 176 DLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADL-SVAL 234
+L + T L + L LDLS G L E + L TL LS N S L ++
Sbjct: 330 ELPMDTLL--KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 387
Query: 235 KPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMG 294
P L L L+N G + T + L L +S N L + L L L L +
Sbjct: 388 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 447
Query: 295 YSNLQRISRSTFLKMTSLKTLILSGNKLET-LESGLFQNLTHLSVLELNNCGLT 347
+ L+ + + +L+TLIL N L + SGL N T+L+ + L+N LT
Sbjct: 448 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL-SNCTNLNWISLSNNRLT 500
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 73/149 (48%), Gaps = 17/149 (11%)
Query: 96 NRCNLT------YISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSG 149
N CN+T + SP+ FDN + L++S N L +I + G++ L L+L +
Sbjct: 608 NPCNITSRVYGGHTSPT-FDNNGSMMFLDMSYNMLSGYIPKEI--GSMPYLFILNLGHND 664
Query: 150 IS-NLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSE-- 206
IS ++PD V + L L+L+ N+L D + + L L +DLSN +L GP+ E
Sbjct: 665 ISGSIPDEV-GDLRGLNILDLSSNKL-DGRIPQAMSA-LTMLTEIDLSNNNLSGPIPEMG 721
Query: 207 --DAFVNATKLRTLYLSGNPLSAADLSVA 233
+ F A L L G PL D S A
Sbjct: 722 QFETFPPAKFLNNPGLCGYPLPRCDPSNA 750
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 131/317 (41%), Gaps = 30/317 (9%)
Query: 42 LLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLT 101
L+ L++ LS P +L+ L L L N L P + +LE L+L+ +LT
Sbjct: 417 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 476
Query: 102 YISPSAFDNLNHLKTLELSQNKLKSHI-DWTLVLGNLGKLDTLDLRQSGISNLPDNVFAN 160
PS N +L + LS N+L I W +G+L+ L I L +N F+
Sbjct: 477 GEIPSGLSNCTNLNWISLSNNRLTGEIPKW------IGRLENL-----AILKLSNNSFSG 525
Query: 161 NTWLRNLNLAE-NELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFV---NATKLR 216
N L + LI LD+ T L + S ++ +V N +
Sbjct: 526 NIPAE---LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKK 582
Query: 217 TLYLSGNPLSAADLSVALKPLTKLHRLSLRN-CGL-SRLPAN----TFHRFTCLQELDIS 270
+ +GN L + +L+RLS RN C + SR+ TF + LD+S
Sbjct: 583 ECHGAGNLLEFQGIRSE-----QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 637
Query: 271 HNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLF 330
+N L + + L L++G++++ + L L LS NKL+
Sbjct: 638 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 697
Query: 331 QNLTHLSVLELNNCGLT 347
LT L+ ++L+N L+
Sbjct: 698 SALTMLTEIDLSNNNLS 714
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 114/277 (41%), Gaps = 37/277 (13%)
Query: 53 SKINPQFFTNLTT----LNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYI--SPS 106
S NP F +T + +DLS PL + V L SL L + ++I S S
Sbjct: 32 SNKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS 91
Query: 107 AFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRN 166
F L +L+LS+N L + LG+ L L++ + + + P V
Sbjct: 92 GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL-DFPGKVSG------G 144
Query: 167 LNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLS 226
L L E++DL + G N+V G + D +L+ L +SGN +S
Sbjct: 145 LKLNSLEVLDLSANSISGANVV-------------GWVLSDG---CGELKHLAISGNKIS 188
Query: 227 AADLSVALKPLTKLHRLSLRNCGLSR-LPANTFHRFTCLQELDISHNPLIDAFTALLSPL 285
V + L L + + S +P + LQ LDIS N L F+ +S
Sbjct: 189 G---DVDVSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTC 243
Query: 286 ESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKL 322
L+ L++ S+ Q + L + SL+ L L+ NK
Sbjct: 244 TELKLLNI--SSNQFVGPIPPLPLKSLQYLSLAENKF 278
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 85/294 (28%), Positives = 124/294 (42%), Gaps = 13/294 (4%)
Query: 59 FFTNLTTLNKLDLSGNPLRIIEPGVFDPL--TSLEYLMLNRCNLTYISPSAFDNLNHLKT 116
F + + L LD+SGN L G F T E +LN + ++ P L L+
Sbjct: 218 FLGDCSALQHLDISGNKLS----GDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQY 273
Query: 117 LELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELI- 175
L L++NK I + G L LDL + F + + L +L L+ N
Sbjct: 274 LSLAENKFTGEIP-DFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 332
Query: 176 DLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADL-SVAL 234
+L + T L + L LDLS G L E + L TL LS N S L ++
Sbjct: 333 ELPMDTLL--KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390
Query: 235 KPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMG 294
P L L L+N G + T + L L +S N L + L L L L +
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 450
Query: 295 YSNLQRISRSTFLKMTSLKTLILSGNKLET-LESGLFQNLTHLSVLELNNCGLT 347
+ L+ + + +L+TLIL N L + SGL N T+L+ + L+N LT
Sbjct: 451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL-SNCTNLNWISLSNNRLT 503
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 73/149 (48%), Gaps = 17/149 (11%)
Query: 96 NRCNLT------YISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSG 149
N CN+T + SP+ FDN + L++S N L +I + G++ L L+L +
Sbjct: 611 NPCNITSRVYGGHTSPT-FDNNGSMMFLDMSYNMLSGYIPKEI--GSMPYLFILNLGHND 667
Query: 150 IS-NLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSE-- 206
IS ++PD V + L L+L+ N+L D + + L L +DLSN +L GP+ E
Sbjct: 668 ISGSIPDEV-GDLRGLNILDLSSNKL-DGRIPQAMSA-LTMLTEIDLSNNNLSGPIPEMG 724
Query: 207 --DAFVNATKLRTLYLSGNPLSAADLSVA 233
+ F A L L G PL D S A
Sbjct: 725 QFETFPPAKFLNNPGLCGYPLPRCDPSNA 753
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 131/317 (41%), Gaps = 30/317 (9%)
Query: 42 LLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLT 101
L+ L++ LS P +L+ L L L N L P + +LE L+L+ +LT
Sbjct: 420 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 479
Query: 102 YISPSAFDNLNHLKTLELSQNKLKSHI-DWTLVLGNLGKLDTLDLRQSGISNLPDNVFAN 160
PS N +L + LS N+L I W +G+L+ L I L +N F+
Sbjct: 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKW------IGRLENL-----AILKLSNNSFSG 528
Query: 161 NTWLRNLNLAE-NELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFV---NATKLR 216
N L + LI LD+ T L + S ++ +V N +
Sbjct: 529 NIPAE---LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKK 585
Query: 217 TLYLSGNPLSAADLSVALKPLTKLHRLSLRN-CGL-SRLPAN----TFHRFTCLQELDIS 270
+ +GN L + +L+RLS RN C + SR+ TF + LD+S
Sbjct: 586 ECHGAGNLLEFQGIRSE-----QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640
Query: 271 HNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLF 330
+N L + + L L++G++++ + L L LS NKL+
Sbjct: 641 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 700
Query: 331 QNLTHLSVLELNNCGLT 347
LT L+ ++L+N L+
Sbjct: 701 SALTMLTEIDLSNNNLS 717
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 91/220 (41%), Gaps = 31/220 (14%)
Query: 104 SPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTW 163
S S F L +L+LS+N L + LG+ L L++ + + + P V
Sbjct: 92 SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL-DFPGKVSG---- 146
Query: 164 LRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGN 223
L L E++DL + G N+V G + D +L+ L +SGN
Sbjct: 147 --GLKLNSLEVLDLSANSISGANVV-------------GWVLSDG---CGELKHLAISGN 188
Query: 224 PLSAADLSVALKPLTKLHRLSLRNCGLSR-LPANTFHRFTCLQELDISHNPLIDAFTALL 282
+S V + L L + + S +P + LQ LDIS N L F+ +
Sbjct: 189 KISG---DVDVSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAI 243
Query: 283 SPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKL 322
S L+ L++ S+ Q + L + SL+ L L+ NK
Sbjct: 244 STCTELKLLNI--SSNQFVGPIPPLPLKSLQYLSLAENKF 281
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 67/148 (45%), Gaps = 29/148 (19%)
Query: 52 LSKINPQFFTNLTTLNKLDLSGNP-LRIIEPGVFDPLTSLEYLMLNRCN-LTYISPSAFD 109
L I F+ L K+++S N L +IE VF L L + + + N L YI+P AF
Sbjct: 42 LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ 101
Query: 110 NLNHLKTLELSQNKLKSHIDWTLVLGNLGK--LDTLD----------------------- 144
NL +L+ L +S +K H+ + +L K LD D
Sbjct: 102 NLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILW 160
Query: 145 LRQSGISNLPDNVFANNTWLRNLNLAEN 172
L ++GI + ++ F N T L LNL++N
Sbjct: 161 LNKNGIQEIHNSAF-NGTQLDELNLSDN 187
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 86/317 (27%), Positives = 133/317 (41%), Gaps = 46/317 (14%)
Query: 63 LTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQN 122
L TL LD + I + + LT L L+ N+T + S NL +L N
Sbjct: 41 LATLTSLDCHNS--SITDMTGIEKLTGLTKLICTSNNITTLDLSQNTNLTYLA---CDSN 95
Query: 123 KLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATT 182
KL +++D T L KL L+ + ++ L + N L LN A N L ++DV+
Sbjct: 96 KL-TNLDVT----PLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEIDVS-- 145
Query: 183 LGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHR 242
H L +CHL +++ T+L TL S N ++ D+S L+R
Sbjct: 146 ------HNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQN----KLLNR 195
Query: 243 LSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRIS 302
L+ +++L N + T LD S N L + ++PL L + D + L +
Sbjct: 196 LNCDTNNITKLDLNQNIQLTF---LDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELD 249
Query: 303 RSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNE-TVFHENYTY- 360
ST K+T+L + + + LE L N T L + C ++ E V H Y
Sbjct: 250 VSTLSKLTTLHCI-----QTDLLEIDLTHN-TQLIYFQAEGCR--KIKELDVTHNTQLYL 301
Query: 361 -----PDLEELRLSGNP 372
+ EL LS NP
Sbjct: 302 LDCQAAGITELDLSQNP 318
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 57/114 (50%), Gaps = 28/114 (24%)
Query: 58 QFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYIS--PSAF------- 108
QFFTNL +L LS N + + P LT LE L +NR L ++ PSA
Sbjct: 60 QFFTNLK---ELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLD 114
Query: 109 -------DNLNHLKTLEL---SQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISN 152
D+L HLK LE+ NKLKS ++LG L KL+ LDL + I+N
Sbjct: 115 NNELRDTDSLIHLKNLEILSIRNNKLKS----IVMLGFLSKLEVLDLHGNEITN 164
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 226 SAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPL 285
S DL V+ K L+ + + N + L F FT L+EL +SHN + D LSPL
Sbjct: 30 SVTDL-VSQKELSGVQNFNGDNSNIQSLAGMQF--FTNLKELHLSHNQISD-----LSPL 81
Query: 286 ESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLEL 341
+ L L+ N R+ + L L L N+L +S L HL LE+
Sbjct: 82 KDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDTDS-----LIHLKNLEI 132
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 40 RSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP-LRIIEPGVFDPLTSLEYLMLNRC 98
R+ + L L I F+ L K+++S N L +IE VF L L + + +
Sbjct: 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89
Query: 99 N-LTYISPSAFDNLNHLKTLELSQNKLK 125
N L YI+P AF NL +L+ L +S +K
Sbjct: 90 NNLLYINPEAFQNLPNLQYLLISNTGIK 117
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 243 LSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRIS 302
+ R GL+ +P N T E+ + N + SP + L +D+ + + ++
Sbjct: 16 VDCRGKGLTEIPTNLPETIT---EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA 72
Query: 303 RSTFLKMTSLKTLILSGNKLETLESGLFQ 331
F + SL +L+L GNK+ L LF+
Sbjct: 73 PDAFQGLRSLNSLVLYGNKITELPKSLFE 101
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 4/133 (3%)
Query: 17 PGLIT-INLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGN 74
P IT I L N I+ + GAF + L + + +S++ P F L +LN L L GN
Sbjct: 31 PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90
Query: 75 PLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVL 134
+ + +F+ L SL+ L+LN + + AF +L++L L L NKL++ T
Sbjct: 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGT--F 148
Query: 135 GNLGKLDTLDLRQ 147
L + T+ L Q
Sbjct: 149 SPLRAIQTMHLAQ 161
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 48/109 (44%)
Query: 233 ALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLD 292
A P KL R+ L N +S L + F L L + N + + +L L SL+ L
Sbjct: 51 AFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL 110
Query: 293 MGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLEL 341
+ + + + F + +L L L NKL+T+ G F L + + L
Sbjct: 111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHL 159
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 52/102 (50%)
Query: 253 LPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSL 312
+P F + L+ +D+S+N + + L SL L + + + + +S F + SL
Sbjct: 47 IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSL 106
Query: 313 KTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVF 354
+ L+L+ NK+ L FQ+L +L++L L + L + + F
Sbjct: 107 QLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 4/133 (3%)
Query: 143 LDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKG 202
+ L Q+ I +P F+ LR ++L+ N++ +L A Q L L+SL L +
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL--APDAFQGLRSLNSLVLYGNKIT- 93
Query: 203 PLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFT 262
L + F L+ L L+ N ++ + A + L L+ LSL + L + TF
Sbjct: 94 ELPKSLFEGLFSLQLLLLNANKINCLRVD-AFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152
Query: 263 CLQELDISHNPLI 275
+Q + ++ NP I
Sbjct: 153 AIQTMHLAQNPFI 165
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 243 LSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRIS 302
+ R GL+ +P N T E+ + N + SP + L +D+ + + ++
Sbjct: 16 VDCRGKGLTEIPTNLPETIT---EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA 72
Query: 303 RSTFLKMTSLKTLILSGNKLETLESGLFQ 331
F + SL +L+L GNK+ L LF+
Sbjct: 73 PDAFQGLRSLNSLVLYGNKITELPKSLFE 101
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 4/133 (3%)
Query: 17 PGLIT-INLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGN 74
P IT I L N I+ + GAF + L + + +S++ P F L +LN L L GN
Sbjct: 31 PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90
Query: 75 PLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVL 134
+ + +F+ L SL+ L+LN + + AF +L++L L L NKL++ T
Sbjct: 91 KITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGT--F 148
Query: 135 GNLGKLDTLDLRQ 147
L + T+ L Q
Sbjct: 149 SPLRAIQTMHLAQ 161
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 48/109 (44%)
Query: 233 ALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLD 292
A P KL R+ L N +S L + F L L + N + + +L L SL+ L
Sbjct: 51 AFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL 110
Query: 293 MGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLEL 341
+ + + + F + +L L L NKL+T+ G F L + + L
Sbjct: 111 LNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHL 159
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 52/102 (50%)
Query: 253 LPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSL 312
+P F + L+ +D+S+N + + L SL L + + + + +S F + SL
Sbjct: 47 IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSL 106
Query: 313 KTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVF 354
+ L+L+ NK+ L FQ+L +L++L L + L + + F
Sbjct: 107 QLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 4/133 (3%)
Query: 143 LDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKG 202
+ L Q+ I +P F+ LR ++L+ N++ +L A Q L L+SL L +
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL--APDAFQGLRSLNSLVLYGNKIT- 93
Query: 203 PLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFT 262
L + F L+ L L+ N ++ + A + L L+ LSL + L + TF
Sbjct: 94 ELPKSLFEGLFSLQLLLLNANKINXLRVD-AFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152
Query: 263 CLQELDISHNPLI 275
+Q + ++ NP I
Sbjct: 153 AIQTMHLAQNPFI 165
>pdb|2J8K|A Chain A, Structure Of The Fusion Of Np275 And Np276, Pentapeptide
Repeat Proteins From Nostoc Punctiforme
Length = 201
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 2/114 (1%)
Query: 140 LDTLDLRQSGISNLP-DNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNC 198
LD +L+Q+ +S N LR NL++ +L D + + + + LD L+
Sbjct: 62 LDEANLQQANLSRADLSGATLNGADLRGANLSKADLSDAILDNAILEGAI-LDEAVLNQA 120
Query: 199 HLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSR 252
+LK E A ++ +R LS L AADLS A + LH+ +L L R
Sbjct: 121 NLKAANLEQAILSHANIREADLSEANLEAADLSGADLAIADLHQANLHQAALER 174
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 28/40 (70%)
Query: 57 PQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLN 96
P+ T+L L +L+++ N L+ + GVFD LTSL+Y+ L+
Sbjct: 466 PKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLH 505
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 519 AITSIKLVGNPWKCDC-NIADMWEWATREKGDIGVLVGSTTPTEIGF-GASRKKKGLVC 575
++ I L NPW C C I + EW + G + GS P G+ + + ++C
Sbjct: 498 SLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVAPDSAKCSGSGKPVRSIIC 556
>pdb|1WWL|A Chain A, Crystal Structure Of Cd14
pdb|1WWL|B Chain B, Crystal Structure Of Cd14
Length = 312
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 57/117 (48%), Gaps = 12/117 (10%)
Query: 215 LRTLYLSGNP-LSAADLSVALKPLT--KLHRLSLRNCGLSRLPANTFHRFTC----LQEL 267
L TL LS NP L L AL PL L L+LRN G+ P+ LQ L
Sbjct: 175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM-ETPSGVCSALAAARVQLQGL 233
Query: 268 DISHNPLIDAFTALLSPLES-LEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLE 323
D+SHN L DA A S L L++ ++ L+++ + K++ L LS N+L+
Sbjct: 234 DLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLD---LSYNRLD 287
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 89/187 (47%), Gaps = 20/187 (10%)
Query: 58 QFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTL 117
Q+ NLT+LN LS N + I P + P ++ L LN LT I P A NL +L L
Sbjct: 63 QYLPNLTSLN---LSNNQITDISPIQYLP--NVTKLFLNGNKLTDIKPLA--NLKNLGWL 115
Query: 118 ELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDL 177
L +NK + L +L KL +L L +GIS++ N + L +L L N++ D+
Sbjct: 116 FLDENK----VKDLSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI 169
Query: 178 DVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPL 237
V + L + LD+L L + + + TKL+ LYLS N +S LK L
Sbjct: 170 TVLSRLTK----LDTLSLEDNQISDIV---PLAGLTKLQNLYLSKNHISDLRALAGLKNL 222
Query: 238 TKLHRLS 244
L S
Sbjct: 223 DVLELFS 229
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 35.8 bits (81), Expect = 0.092, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 27/124 (21%)
Query: 273 PLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGN---KLETLE--- 326
P I+ A LS L++ +HL + +N+++IS + M +L+ L L N K+E L+
Sbjct: 36 PPIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIENLDAVA 93
Query: 327 ----------------SGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSG 370
SG+ + L +L VL ++N +T E + LE+L L+G
Sbjct: 94 DTLEELWISYNQIASLSGI-EKLVNLRVLYMSNNKITNWGE--IDKLAALDKLEDLLLAG 150
Query: 371 NPLH 374
NPL+
Sbjct: 151 NPLY 154
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 35.4 bits (80), Expect = 0.095, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 27/124 (21%)
Query: 273 PLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGN---KLETLE--- 326
P I+ A LS L++ +HL + +N+++IS + M +L+ L L N K+E L+
Sbjct: 35 PPIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIENLDAVA 92
Query: 327 ----------------SGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSG 370
SG+ + L +L VL ++N +T E + LE+L L+G
Sbjct: 93 DTLEELWISYNQIASLSGI-EKLVNLRVLYMSNNKITNWGE--IDKLAALDKLEDLLLAG 149
Query: 371 NPLH 374
NPL+
Sbjct: 150 NPLY 153
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 88/218 (40%), Gaps = 19/218 (8%)
Query: 142 TLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLK 201
L+LR + PD F L +L + L Q L++L L+ L+
Sbjct: 85 ALELRSVPLPQFPDQAFR----LSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLR 140
Query: 202 GPLSEDAFVNATKLRTLYLSG--------NPLSAADLSVALKPLTKLHRLSLRNCGLSRL 253
+ A +N +LR L + PL++ D S + L L L L G+ L
Sbjct: 141 ALPASIASLN--RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL 198
Query: 254 PANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLK 313
PA + L+ L I ++PL A + L LE LD+ R F LK
Sbjct: 199 PA-SIANLQNLKSLKIRNSPL-SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256
Query: 314 TLILSG-NKLETLESGLFQNLTHLSVLELNNC-GLTRL 349
LIL + L TL + + LT L L+L C L+RL
Sbjct: 257 RLILKDCSNLLTLPLDIHR-LTQLEKLDLRGCVNLSRL 293
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 86/167 (51%), Gaps = 15/167 (8%)
Query: 11 RRNLDNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLD 70
+ +LD G+ T++ + +EG + +L+ L +++ ++ + P NLT + +L+
Sbjct: 37 QADLD--GITTLSAFGTGVTTIEGVQYL-NNLIGLELKDNQITDLAP--LKNLTKITELE 91
Query: 71 LSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDW 130
LSGNPL+ + L S++ L L +T ++P A L++L+ L L N++ ++I
Sbjct: 92 LSGNPLKNVS--AIAGLQSIKTLDLTSTQITDVTPLA--GLSNLQVLYLDLNQI-TNISP 146
Query: 131 TLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDL 177
L L L L + + +S+L AN + L L +N++ D+
Sbjct: 147 ---LAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDI 188
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 74/314 (23%), Positives = 118/314 (37%), Gaps = 65/314 (20%)
Query: 125 KSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLG 184
KS++ T+ +L + TL +G++ + + NN L L L +N++ DL
Sbjct: 28 KSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNN--LIGLELKDNQITDL------- 78
Query: 185 QNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLS 244
PL N TK+ L LSGNPL L+ + L S
Sbjct: 79 -----------------APLK-----NLTKITELELSGNPLKNVSAIAGLQSIKTLDLTS 116
Query: 245 LRN------CGLSRLPA-----------NTFHRFTCLQELDISHNPLIDAFTALLSPLES 287
+ GLS L + T LQ L I + + D L+PL +
Sbjct: 117 TQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSD-----LTPLAN 171
Query: 288 LEHLDMGYSNLQRISRSTFLKMTSLKTLI---LSGNKLETLESGLFQNLTHLSVLELNNC 344
L L ++ +IS + SL LI L N++ + N ++L ++ L N
Sbjct: 172 LSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQ 227
Query: 345 GLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFL-VILF 403
+T N+ VF+ N SG P+ P + P W F+ + +
Sbjct: 228 TIT--NQPVFYNNNLVVPNVVKGPSGAPIA--PATISDNGTYASPNLTWNLTSFINNVSY 283
Query: 404 ILNETVFHENYTYP 417
N++V +N T P
Sbjct: 284 TFNQSVTFKNTTVP 297
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 66 LNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQN 122
+ +LDLSGNPL I P T LE L L+ N+ Y + ++L+ L+TL+L+ N
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTKLELLNLS-SNVLYETLD-LESLSTLRTLDLNNN 90
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 17/114 (14%)
Query: 215 LRTLYLSGNPL---SAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISH 271
++ L LSGNPL SAADL+ P TKL L+L + L + L+ LD+++
Sbjct: 36 VKELDLSGNPLSQISAADLA----PFTKLELLNLSSNVL--YETLDLESLSTLRTLDLNN 89
Query: 272 NPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETL 325
N + + L+ P S+E L +N+ R+S S + K + L+ NK+ L
Sbjct: 90 NYVQE---LLVGP--SIETLHAANNNISRVSCS---RGQGKKNIYLANNKITML 135
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 84/178 (47%), Gaps = 26/178 (14%)
Query: 66 LNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLK 125
+ +LDLSGNPL I P T LE L L+ N+ Y + ++L+ L+TL+L+ N ++
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTKLELLNLS-SNVLYETLD-LESLSTLRTLDLNNNYVQ 93
Query: 126 SHIDWTLVLGNLGKLDTLDLRQSGISNL-------PDNVF-ANN--TWLRNLN---LAEN 172
L++G ++TL + IS + N++ ANN T LR+L+ +
Sbjct: 94 E-----LLVG--PSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRV 146
Query: 173 ELIDLDVATTLGQNLVHL----DSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLS 226
+ +DL + N L D+L+ N V KL+TL LS N L+
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA 204
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 17/118 (14%)
Query: 211 NATKLRTLYLSGNPL---SAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQEL 267
+A ++ L LSGNPL SAADL+ P TKL L+L + L + L+ L
Sbjct: 32 SAWNVKELDLSGNPLSQISAADLA----PFTKLELLNLSSNVLYETL--DLESLSTLRTL 85
Query: 268 DISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETL 325
D+++N + + L+ P S+E L +N+ R+S S + K + L+ NK+ L
Sbjct: 86 DLNNNYVQE---LLVGP--SIETLHAANNNISRVSCS---RGQGKKNIYLANNKITML 135
>pdb|2XRG|A Chain A, Crystal Structure Of Autotaxin (Enpp2) In Complex With The
Ha155 Boronic Acid Inhibitor
Length = 862
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 74 NPLRIIEPGVFDPLTSLEYLMLNRC-NLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTL 132
NPLR I+ V + L+ L L+RC N+ ++ +++ +T E N L + D TL
Sbjct: 326 NPLREIDKTVGQLMDGLKQLRLHRCVNVIFVGDHGMEDVTCDRT-EFLSNYLTNVDDITL 384
Query: 133 VLGNLGKL 140
V G LG++
Sbjct: 385 VPGTLGRI 392
>pdb|2XR9|A Chain A, Crystal Structure Of Autotaxin (Enpp2)
Length = 827
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 74 NPLRIIEPGVFDPLTSLEYLMLNRC-NLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTL 132
NPLR I+ V + L+ L L+RC N+ ++ +++ +T E N L + D TL
Sbjct: 291 NPLREIDKTVGQLMDGLKQLRLHRCVNVIFVGDHGMEDVTCDRT-EFLSNYLTNVDDITL 349
Query: 133 VLGNLGKL 140
V G LG++
Sbjct: 350 VPGTLGRI 357
>pdb|3NKM|A Chain A, Crystal Structure Of Mouse Autotaxin
pdb|3NKN|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
14:0-Lpa
pdb|3NKO|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
16:0-Lpa
pdb|3NKP|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
18:1-Lpa
pdb|3NKQ|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
18:3-Lpa
pdb|3NKR|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
22:6-Lpa
Length = 831
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 74 NPLRIIEPGVFDPLTSLEYLMLNRC-NLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTL 132
NPLR I+ V + L+ L L+RC N+ ++ +++ +T E N L + D TL
Sbjct: 291 NPLREIDKTVGQLMDGLKQLKLHRCVNVIFVGDHGMEDVTCDRT-EFLSNYLTNVDDITL 349
Query: 133 VLGNLGKL 140
V G LG++
Sbjct: 350 VPGTLGRI 357
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 6/83 (7%)
Query: 42 LLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLT 101
L+ L +++ ++ + P NLT + +L+LSGNPL+ + L S++ L L +T
Sbjct: 71 LIGLELKDNQITDLTP--LKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTSTQIT 126
Query: 102 YISPSAFDNLNHLKTLELSQNKL 124
++P A L++L+ L L N++
Sbjct: 127 DVTPLA--GLSNLQVLYLDLNQI 147
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 9/115 (7%)
Query: 117 LELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELID 176
L +SQN + WT + +L KL L + + I L +VF N L L+L+ N+L+
Sbjct: 26 LNISQNYISEL--WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK 83
Query: 177 LDVATTLGQNLVHLDSLDLS-NCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADL 230
+ T V+L LDLS N P+ ++ F N ++L+ L LS L + +
Sbjct: 84 ISCHPT-----VNLKHLDLSFNAFDALPICKE-FGNMSQLKFLGLSTTHLEKSSV 132
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 80/170 (47%), Gaps = 22/170 (12%)
Query: 193 LDLSNCHLKGPLSEDAFVNA---TKLRTLYLSGNPLSA----ADLSVALKPLTKLHRLSL 245
LD SN L++ F N T+L TL L N L A+++ +K L +L +
Sbjct: 329 LDFSN----NLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK---SLQQLDI 381
Query: 246 RNCGLSRLPANTFHRFT-CLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRS 304
+S +T L L++S N L D L P ++ LD+ + ++ I +
Sbjct: 382 SQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP--RIKVLDLHSNKIKSIPKQ 439
Query: 305 TFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELN----NCGLTRLN 350
+K+ +L+ L ++ N+L+++ G+F LT L + L+ +C R++
Sbjct: 440 V-VKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 488
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 57 PQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLN 96
P+ L L +L+++ N L+ + G+FD LTSL+ + L+
Sbjct: 437 PKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLH 476
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 237 LTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYS 296
L+KL L + + + L + F L+ LD+SHN L+ P +L+HLD+ ++
Sbjct: 44 LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISC---HPTVNLKHLDLSFN 100
Query: 297 NLQRISR-STFLKMTSLKTLILSGNKLE 323
+ F M+ LK L LS LE
Sbjct: 101 AFDALPICKEFGNMSQLKFLGLSTTHLE 128
>pdb|3RFE|A Chain A, Crystal Structure Of Glycoprotein Gpib Ectodomain
pdb|3RFE|B Chain B, Crystal Structure Of Glycoprotein Gpib Ectodomain
Length = 130
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 507 THISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEW 542
T + P +L A+ + L NPW+CDC + + W
Sbjct: 44 TALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAW 79
>pdb|3REZ|A Chain A, Glycoprotein Gpib Variant
pdb|3REZ|B Chain B, Glycoprotein Gpib Variant
pdb|3REZ|C Chain C, Glycoprotein Gpib Variant
pdb|3REZ|D Chain D, Glycoprotein Gpib Variant
Length = 129
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 507 THISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEW 542
T + P H + + L NPW+CDC++ + W
Sbjct: 43 TSVPPGAFDHLPQLRTAHLGANPWRCDCSLTYLRLW 78
Score = 28.9 bits (63), Expect = 9.5, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 93 LMLNRCNLTYISPSAFDNLNHLKTLELSQN 122
L+L NLT + P AFD+L L+T L N
Sbjct: 35 LVLTGNNLTSVPPGAFDHLPQLRTAHLGAN 64
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 239 KLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNL 298
+ H L L N GLS LP H L+ L S N + T L +SL+ L + +NL
Sbjct: 72 QAHELELNNLGLSSLPELPPH----LESLVASCN----SLTELPELPQSLKSLLVDNNNL 123
Query: 299 QRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENY 358
+ +S L L+ L +S N+LE L QN + L +++++N L +L +
Sbjct: 124 KALSDLPPL----LEYLGVSNNQLEKLPE--LQNSSFLKIIDVDNNSLKKLPDLP----- 172
Query: 359 TYPDLEELRLSGNPLHVLPD 378
P LE + N L LP+
Sbjct: 173 --PSLEFIAAGNNQLEELPE 190
>pdb|2P14|A Chain A, Crystal Structure Of Small Subunit (r.bspd6i2) Of The
Heterodimeric Restriction Endonuclease R.bspd6i
Length = 192
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 60 FTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYL-MLNRCNLTYISPSAFDNLNHLKTLE 118
+ NL KLD SG+P+ PGV D L E+ +L C+LT I D
Sbjct: 35 YKNLVPNFKLDDSGHPIGNAIPGVEDILVEYEHFSILIECSLT-IGEKQLDYEGDSVVRH 93
Query: 119 LSQNKLKSHIDWTLVLG 135
L + K K +TL LG
Sbjct: 94 LQEYKKKGIEAYTLFLG 110
>pdb|2AAM|A Chain A, Crystal Structure Of A Putative Glycosidase (Tm1410) From
Thermotoga Maritima At 2.20 A Resolution
pdb|2AAM|B Chain B, Crystal Structure Of A Putative Glycosidase (Tm1410) From
Thermotoga Maritima At 2.20 A Resolution
pdb|2AAM|C Chain C, Crystal Structure Of A Putative Glycosidase (Tm1410) From
Thermotoga Maritima At 2.20 A Resolution
pdb|2AAM|D Chain D, Crystal Structure Of A Putative Glycosidase (Tm1410) From
Thermotoga Maritima At 2.20 A Resolution
pdb|2AAM|E Chain E, Crystal Structure Of A Putative Glycosidase (Tm1410) From
Thermotoga Maritima At 2.20 A Resolution
pdb|2AAM|F Chain F, Crystal Structure Of A Putative Glycosidase (Tm1410) From
Thermotoga Maritima At 2.20 A Resolution
Length = 309
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 103 ISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKL 140
+S A +NL +LKT+ L +N+ KS +++ + L GK
Sbjct: 205 VSGWAVENLFYLKTIPLEENETKSRLEYLIRLNRKGKF 242
>pdb|4FD0|A Chain A, Crystal Structure Of A Leucine Rich Hypothetical Protein
(Baccac_03700) From Bacteroides Caccae Atcc 43185 At
2.07 A Resolution
Length = 404
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 66/132 (50%), Gaps = 12/132 (9%)
Query: 250 LSRLPANTFHRFTCLQELDISHNPL--IDAFTALLSPLESLEHLDMGYSNLQRISRSTFL 307
L +L N F+ L++ D+S L + A T + + +E + + + L+ I FL
Sbjct: 171 LEQLEENIFYYCRNLKKADLSRTKLTKLPASTFVYAGVEEV----LLPATLKEIGAQAFL 226
Query: 308 KMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELR 367
K + LKT+ + N + T+ F+ + ++ ++L N G+T + + F Y P+L E+
Sbjct: 227 KTSQLKTIEIPEN-VRTIGLEAFRE-SGITTVKLPN-GVTTIAQRAF---YYCPELTEVT 280
Query: 368 LSGNPLHVLPDS 379
G ++ P++
Sbjct: 281 TYGTVINENPEA 292
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,560,948
Number of Sequences: 62578
Number of extensions: 785355
Number of successful extensions: 2705
Number of sequences better than 100.0: 129
Number of HSP's better than 100.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 1479
Number of HSP's gapped (non-prelim): 693
length of query: 694
length of database: 14,973,337
effective HSP length: 106
effective length of query: 588
effective length of database: 8,340,069
effective search space: 4903960572
effective search space used: 4903960572
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)