Query psy3329
Match_columns 694
No_of_seqs 647 out of 4115
Neff 10.3
Searched_HMMs 29240
Date Fri Aug 16 22:10:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3329.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3329hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t6q_A CD180 antigen; protein- 100.0 6.1E-55 2.1E-59 488.2 43.5 483 17-545 33-574 (606)
2 1ziw_A TOLL-like receptor 3; i 100.0 1.7E-54 5.9E-59 491.0 44.3 505 17-545 25-637 (680)
3 3vq2_A TLR4, TOLL-like recepto 100.0 2.6E-53 8.8E-58 475.0 36.0 475 17-545 32-572 (606)
4 3rgz_A Protein brassinosteroid 100.0 3.1E-52 1.1E-56 476.3 34.1 494 12-535 195-721 (768)
5 3j0a_A TOLL-like receptor 5; m 100.0 1.5E-51 5.1E-56 475.6 35.4 507 15-546 22-575 (844)
6 3rgz_A Protein brassinosteroid 100.0 1.6E-51 5.5E-56 470.4 34.0 477 13-539 73-559 (768)
7 1ziw_A TOLL-like receptor 3; i 100.0 5.8E-49 2E-53 445.7 45.9 484 20-532 7-598 (680)
8 3t6q_A CD180 antigen; protein- 100.0 8.3E-49 2.8E-53 438.5 44.2 464 19-532 14-537 (606)
9 2z63_A TOLL-like receptor 4, v 100.0 3.4E-49 1.2E-53 438.6 35.8 477 17-545 28-546 (570)
10 2z81_A CD282 antigen, TOLL-lik 100.0 6E-49 2E-53 434.4 32.0 475 17-545 26-525 (549)
11 4g8a_A TOLL-like receptor 4; l 100.0 7.1E-48 2.4E-52 434.2 37.9 476 18-546 53-595 (635)
12 3vq2_A TLR4, TOLL-like recepto 100.0 1.3E-47 4.4E-52 428.8 37.6 459 19-532 13-535 (606)
13 2z7x_B TOLL-like receptor 1, v 100.0 4E-48 1.4E-52 424.5 24.9 470 20-546 3-497 (520)
14 3j0a_A TOLL-like receptor 5; m 100.0 5.1E-47 1.7E-51 437.8 33.0 494 20-533 7-541 (844)
15 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.8E-45 1.3E-49 404.0 30.7 477 15-545 29-525 (562)
16 2z81_A CD282 antigen, TOLL-lik 100.0 1.9E-44 6.4E-49 398.4 29.3 451 9-511 42-514 (549)
17 2z63_A TOLL-like receptor 4, v 100.0 6E-44 2E-48 396.5 32.9 459 18-532 8-508 (570)
18 4eco_A Uncharacterized protein 100.0 1.9E-42 6.5E-47 386.3 28.5 421 17-509 81-602 (636)
19 4ecn_A Leucine-rich repeat pro 100.0 5.4E-42 1.8E-46 388.1 31.9 448 17-536 323-871 (876)
20 3v47_A TOLL-like receptor 5B a 100.0 1.5E-40 5.2E-45 358.1 35.1 396 19-545 12-423 (455)
21 2z7x_B TOLL-like receptor 1, v 100.0 6.5E-42 2.2E-46 375.2 24.4 439 17-511 21-485 (520)
22 4eco_A Uncharacterized protein 100.0 4.9E-42 1.7E-46 383.0 22.7 445 40-532 81-601 (636)
23 4ecn_A Leucine-rich repeat pro 100.0 2.1E-40 7E-45 375.2 30.4 426 40-532 323-841 (876)
24 4g8a_A TOLL-like receptor 4; l 100.0 1.1E-38 3.7E-43 359.2 36.7 483 20-532 34-556 (635)
25 2id5_A Lingo-1, leucine rich r 100.0 5.9E-40 2E-44 355.4 24.5 384 188-617 32-420 (477)
26 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.6E-39 5.3E-44 359.1 25.9 440 17-511 52-514 (562)
27 1jl5_A Outer protein YOPM; leu 100.0 1.8E-38 6.2E-43 338.5 28.6 407 14-533 8-431 (454)
28 1jl5_A Outer protein YOPM; leu 100.0 2.9E-37 9.9E-42 329.2 26.9 387 38-532 9-410 (454)
29 1o6v_A Internalin A; bacterial 100.0 4.9E-36 1.7E-40 323.0 34.0 300 39-374 45-344 (466)
30 3v47_A TOLL-like receptor 5B a 100.0 2.2E-36 7.6E-41 325.6 30.4 354 17-376 30-410 (455)
31 1o6v_A Internalin A; bacterial 100.0 1.9E-35 6.5E-40 318.4 34.0 347 62-509 44-390 (466)
32 3bz5_A Internalin-J, INLJ; leu 100.0 2.6E-35 8.9E-40 314.4 31.0 357 35-513 37-393 (457)
33 3bz5_A Internalin-J, INLJ; leu 100.0 2.7E-35 9.4E-40 314.2 29.3 266 10-325 35-301 (457)
34 2id5_A Lingo-1, leucine rich r 100.0 9.9E-35 3.4E-39 314.4 26.9 321 19-375 13-334 (477)
35 3o6n_A APL1; leucine-rich repe 100.0 6.4E-34 2.2E-38 299.5 24.5 322 137-544 44-365 (390)
36 4fmz_A Internalin; leucine ric 100.0 1.4E-32 4.7E-37 284.7 32.0 305 38-374 42-346 (347)
37 3o6n_A APL1; leucine-rich repe 100.0 7E-33 2.4E-37 291.5 29.3 310 38-374 43-352 (390)
38 4fmz_A Internalin; leucine ric 100.0 8.1E-32 2.8E-36 278.9 34.9 309 11-347 38-346 (347)
39 3zyj_A Leucine-rich repeat-con 100.0 4.1E-33 1.4E-37 297.9 25.8 327 240-617 45-375 (440)
40 3oja_B Anopheles plasmodium-re 100.0 5.2E-33 1.8E-37 308.5 24.8 320 137-542 50-369 (597)
41 3zyi_A Leucine-rich repeat-con 100.0 1E-32 3.5E-37 295.9 25.4 325 240-616 56-384 (452)
42 3oja_B Anopheles plasmodium-re 100.0 7.8E-32 2.7E-36 299.0 29.5 310 38-374 49-358 (597)
43 2ft3_A Biglycan; proteoglycan, 100.0 3.9E-30 1.3E-34 264.1 25.0 290 41-372 34-331 (332)
44 2z66_A Variable lymphocyte rec 100.0 3.3E-30 1.1E-34 261.5 23.5 242 263-545 29-275 (306)
45 1ozn_A Reticulon 4 receptor; N 100.0 6.9E-30 2.4E-34 256.3 25.2 239 241-546 14-253 (285)
46 1xku_A Decorin; proteoglycan, 100.0 2.5E-29 8.6E-34 258.0 28.9 291 41-345 32-330 (330)
47 1xku_A Decorin; proteoglycan, 100.0 2.2E-29 7.5E-34 258.4 27.9 291 64-372 31-330 (330)
48 2z80_A TOLL-like receptor 2, v 100.0 1.2E-30 4.3E-35 270.3 17.3 291 212-546 30-330 (353)
49 2ft3_A Biglycan; proteoglycan, 100.0 1.9E-29 6.6E-34 259.0 24.8 289 17-345 33-331 (332)
50 1ogq_A PGIP-2, polygalacturona 100.0 2E-30 7E-35 263.2 13.8 255 238-535 50-308 (313)
51 1z7x_W Ribonuclease inhibitor; 100.0 1E-30 3.5E-35 281.8 8.4 357 16-375 2-412 (461)
52 1z7x_W Ribonuclease inhibitor; 100.0 2.3E-30 7.8E-35 279.1 6.7 361 13-374 24-440 (461)
53 3zyj_A Leucine-rich repeat-con 100.0 3.8E-27 1.3E-31 251.6 26.0 248 215-508 45-293 (440)
54 3zyi_A Leucine-rich repeat-con 100.0 5E-27 1.7E-31 251.6 24.5 248 215-508 56-304 (452)
55 2z66_A Variable lymphocyte rec 100.0 1.9E-27 6.4E-32 241.3 18.7 276 216-535 10-291 (306)
56 1p9a_G Platelet glycoprotein I 99.9 1.1E-26 3.6E-31 232.6 23.3 215 284-545 8-222 (290)
57 2o6q_A Variable lymphocyte rec 99.9 1.7E-26 5.7E-31 229.4 24.4 195 311-545 38-233 (270)
58 3ogk_B Coronatine-insensitive 99.9 2.6E-29 8.9E-34 279.9 3.8 429 34-528 67-548 (592)
59 1ogq_A PGIP-2, polygalacturona 99.9 5.4E-28 1.9E-32 245.3 12.5 232 235-509 73-307 (313)
60 2z80_A TOLL-like receptor 2, v 99.9 2.9E-27 1E-31 244.9 17.8 282 16-348 30-315 (353)
61 2z62_A TOLL-like receptor 4, v 99.9 7.6E-27 2.6E-31 232.9 20.0 235 243-545 12-252 (276)
62 1ozn_A Reticulon 4 receptor; N 99.9 8.2E-27 2.8E-31 233.9 17.3 225 216-508 14-239 (285)
63 3g06_A SSPH2 (leucine-rich rep 99.9 2.4E-25 8.3E-30 244.2 29.2 266 138-515 40-305 (622)
64 3g06_A SSPH2 (leucine-rich rep 99.9 4.6E-25 1.6E-29 242.0 29.3 259 189-533 41-299 (622)
65 3o53_A Protein LRIM1, AGAP0063 99.9 7.7E-27 2.6E-31 237.5 12.2 247 241-540 13-259 (317)
66 3oja_A Leucine-rich immune mol 99.9 2.4E-26 8.3E-31 247.4 15.3 124 238-374 34-157 (487)
67 3o53_A Protein LRIM1, AGAP0063 99.9 1E-26 3.6E-31 236.6 9.8 241 235-528 31-272 (317)
68 3ogk_B Coronatine-insensitive 99.9 7.7E-27 2.6E-31 260.0 7.9 429 12-478 68-549 (592)
69 4fcg_A Uncharacterized protein 99.9 4.5E-25 1.6E-29 225.1 17.8 234 237-530 80-313 (328)
70 2p1m_B Transport inhibitor res 99.9 2.6E-27 8.9E-32 263.9 -0.9 403 86-526 103-539 (594)
71 3oja_A Leucine-rich immune mol 99.9 2.5E-25 8.5E-30 239.5 13.7 227 260-539 32-258 (487)
72 1wwl_A Monocyte differentiatio 99.9 8.3E-26 2.8E-30 229.4 7.5 206 260-508 93-310 (312)
73 3m19_A Variable lymphocyte rec 99.9 9.4E-24 3.2E-28 207.0 21.3 125 416-545 82-207 (251)
74 4fcg_A Uncharacterized protein 99.9 3.6E-24 1.2E-28 218.5 18.6 227 213-509 81-316 (328)
75 1wwl_A Monocyte differentiatio 99.9 8E-26 2.7E-30 229.5 5.5 252 37-324 40-310 (312)
76 2o6q_A Variable lymphocyte rec 99.9 5.7E-23 2E-27 203.8 23.3 202 240-508 18-219 (270)
77 3rfs_A Internalin B, repeat mo 99.9 1.5E-23 5E-28 208.3 18.3 125 416-545 108-233 (272)
78 2z62_A TOLL-like receptor 4, v 99.9 2.8E-23 9.5E-28 207.1 19.4 210 238-482 28-239 (276)
79 2v9t_B SLIT homolog 2 protein 99.9 2.6E-23 8.8E-28 199.0 17.7 126 416-546 55-180 (220)
80 3rfs_A Internalin B, repeat mo 99.9 1.6E-23 5.6E-28 207.9 15.3 208 236-518 39-246 (272)
81 2p1m_B Transport inhibitor res 99.9 1.3E-24 4.5E-29 242.1 6.7 352 14-374 102-519 (594)
82 2v70_A SLIT-2, SLIT homolog 2 99.9 9.8E-23 3.3E-27 195.0 17.5 126 416-546 56-181 (220)
83 1p9a_G Platelet glycoprotein I 99.9 7.7E-22 2.6E-26 197.3 22.5 203 235-508 7-209 (290)
84 2xot_A Amphoterin-induced prot 99.9 5.2E-23 1.8E-27 213.1 14.2 128 416-545 87-217 (361)
85 2xwt_C Thyrotropin receptor; s 99.9 9.5E-23 3.3E-27 198.4 14.1 199 263-528 32-236 (239)
86 2xwt_C Thyrotropin receptor; s 99.9 2.8E-22 9.5E-27 195.1 15.6 197 238-504 31-236 (239)
87 1h6u_A Internalin H; cell adhe 99.9 3.5E-22 1.2E-26 201.9 15.7 193 236-481 39-231 (308)
88 3goz_A Leucine-rich repeat-con 99.9 3.6E-23 1.2E-27 214.6 6.6 271 218-545 3-310 (362)
89 1h6u_A Internalin H; cell adhe 99.9 1.5E-21 5E-26 197.3 18.1 104 416-532 128-231 (308)
90 3m19_A Variable lymphocyte rec 99.9 3.9E-21 1.3E-25 188.3 19.7 180 239-482 15-194 (251)
91 4ay9_X Follicle-stimulating ho 99.9 1.3E-21 4.5E-26 201.8 16.1 243 243-534 14-261 (350)
92 4glp_A Monocyte differentiatio 99.9 1.2E-21 4.2E-26 198.5 14.5 233 214-508 65-308 (310)
93 4glp_A Monocyte differentiatio 99.9 1.8E-21 6.1E-26 197.3 13.5 230 262-532 64-308 (310)
94 1w8a_A SLIT protein; signaling 99.9 9.3E-21 3.2E-25 177.1 16.0 146 416-566 28-174 (192)
95 2wfh_A SLIT homolog 2 protein 99.9 9.5E-21 3.2E-25 176.9 16.0 125 416-546 30-154 (193)
96 4ay9_X Follicle-stimulating ho 99.8 9.3E-21 3.2E-25 195.4 16.2 239 20-271 12-255 (350)
97 3goz_A Leucine-rich repeat-con 99.8 4E-21 1.4E-25 199.2 13.0 259 21-302 2-300 (362)
98 2ca6_A RAN GTPase-activating p 99.8 1.2E-21 4.1E-26 205.3 8.5 103 28-151 20-135 (386)
99 3e6j_A Variable lymphocyte rec 99.8 6.8E-20 2.3E-24 176.5 19.8 124 416-545 63-187 (229)
100 2ca6_A RAN GTPase-activating p 99.8 8E-22 2.7E-26 206.7 6.8 244 84-350 28-319 (386)
101 3cvr_A Invasion plasmid antige 99.8 1.3E-20 4.5E-25 204.0 15.9 212 239-543 60-292 (571)
102 2ast_B S-phase kinase-associat 99.8 2.5E-21 8.5E-26 199.0 9.4 236 88-353 70-312 (336)
103 2ast_B S-phase kinase-associat 99.8 4.6E-21 1.6E-25 197.1 10.5 255 42-307 49-314 (336)
104 2o6s_A Variable lymphocyte rec 99.8 1.2E-18 4.1E-23 165.4 20.3 125 416-545 51-176 (208)
105 2o6s_A Variable lymphocyte rec 99.8 3.4E-19 1.2E-23 169.2 14.1 174 20-206 10-183 (208)
106 1h6t_A Internalin B; cell adhe 99.8 2.7E-19 9.2E-24 179.0 10.8 172 285-510 45-216 (291)
107 3sb4_A Hypothetical leucine ri 99.8 5.5E-19 1.9E-23 180.5 13.0 284 39-340 24-327 (329)
108 1h6t_A Internalin B; cell adhe 99.8 7.6E-19 2.6E-23 175.7 13.2 175 235-484 43-217 (291)
109 3cvr_A Invasion plasmid antige 99.8 4E-18 1.4E-22 184.6 19.1 194 213-489 59-252 (571)
110 1m9s_A Internalin B; cell inva 99.8 8.8E-19 3E-23 192.0 12.6 190 240-482 23-212 (605)
111 2v9t_B SLIT homolog 2 protein 99.8 5.2E-18 1.8E-22 162.0 16.3 153 20-176 14-166 (220)
112 3sb4_A Hypothetical leucine ri 99.8 1.8E-18 6.3E-23 176.6 12.4 103 416-525 225-328 (329)
113 3e6j_A Variable lymphocyte rec 99.8 9.3E-18 3.2E-22 161.5 16.6 153 19-176 21-173 (229)
114 2o6r_A Variable lymphocyte rec 99.8 9.8E-18 3.3E-22 154.5 16.1 125 416-545 27-152 (177)
115 4fs7_A Uncharacterized protein 99.8 3E-17 1E-21 172.0 21.5 312 8-342 62-374 (394)
116 2v70_A SLIT-2, SLIT homolog 2 99.8 1.5E-17 5.2E-22 158.8 16.3 154 20-177 14-168 (220)
117 2xot_A Amphoterin-induced prot 99.7 1.2E-17 3.9E-22 172.9 16.3 154 20-177 21-178 (361)
118 1m9s_A Internalin B; cell inva 99.7 6E-18 2.1E-22 185.4 13.9 198 262-515 21-218 (605)
119 4fdw_A Leucine rich hypothetic 99.7 1.1E-16 3.9E-21 166.6 22.3 265 63-373 112-382 (401)
120 4fs7_A Uncharacterized protein 99.7 1.1E-16 3.8E-21 167.7 20.7 259 52-355 59-317 (394)
121 4ezg_A Putative uncharacterize 99.7 1.8E-17 6.3E-22 155.5 12.9 152 14-174 41-193 (197)
122 1xeu_A Internalin C; cellular 99.7 5.2E-18 1.8E-22 166.8 9.0 62 284-349 39-100 (263)
123 4fdw_A Leucine rich hypothetic 99.7 3.7E-16 1.3E-20 162.7 22.5 157 204-373 127-283 (401)
124 3g39_A Variable lymphocyte rec 99.7 8E-17 2.7E-21 146.8 14.0 120 418-545 10-130 (170)
125 1dce_A Protein (RAB geranylger 99.7 1.6E-19 5.6E-24 196.7 -7.9 101 416-524 462-566 (567)
126 2r9u_A Variable lymphocyte rec 99.7 4E-16 1.4E-20 142.7 13.9 119 419-545 14-133 (174)
127 4ezg_A Putative uncharacterize 99.7 3.3E-16 1.1E-20 146.9 13.6 152 211-374 42-194 (197)
128 1xeu_A Internalin C; cellular 99.7 3.4E-16 1.2E-20 153.8 14.1 169 15-201 17-185 (263)
129 1dce_A Protein (RAB geranylger 99.7 6.6E-19 2.3E-23 191.9 -7.9 125 335-501 442-567 (567)
130 2ifg_A High affinity nerve gro 99.6 3.1E-16 1.1E-20 161.5 10.1 119 420-546 11-131 (347)
131 4gt6_A Cell surface protein; l 99.6 3.6E-14 1.2E-18 148.6 24.6 332 8-373 54-390 (394)
132 4gt6_A Cell surface protein; l 99.6 2.4E-14 8.1E-19 149.9 22.7 301 53-372 52-368 (394)
133 2ell_A Acidic leucine-rich nuc 99.6 2.3E-15 8E-20 137.2 9.8 136 39-177 23-162 (168)
134 1w8a_A SLIT protein; signaling 99.6 6.3E-15 2.2E-19 137.3 12.3 128 20-151 11-139 (192)
135 2wfh_A SLIT homolog 2 protein 99.6 1.9E-14 6.6E-19 133.9 13.6 127 20-151 13-139 (193)
136 2ell_A Acidic leucine-rich nuc 99.6 7.7E-15 2.6E-19 133.7 10.3 113 259-376 46-162 (168)
137 2o6r_A Variable lymphocyte rec 99.6 3.6E-14 1.2E-18 130.5 14.7 127 20-150 10-136 (177)
138 4b8c_D Glucose-repressible alc 99.6 7.7E-16 2.6E-20 173.2 3.4 90 279-374 217-306 (727)
139 2je0_A Acidic leucine-rich nuc 99.5 1.4E-14 4.8E-19 129.0 10.4 129 39-170 16-148 (149)
140 1a9n_A U2A', U2A'; complex (nu 99.5 1.6E-14 5.3E-19 132.7 10.2 137 11-149 13-151 (176)
141 4b8c_D Glucose-repressible alc 99.5 4.4E-15 1.5E-19 167.1 5.9 213 262-530 173-403 (727)
142 2je0_A Acidic leucine-rich nuc 99.5 3.6E-14 1.2E-18 126.4 9.5 90 259-350 39-129 (149)
143 4h09_A Hypothetical leucine ri 99.5 3.6E-12 1.2E-16 132.8 24.8 303 35-355 41-353 (379)
144 1a9n_A U2A', U2A'; complex (nu 99.5 5.3E-14 1.8E-18 129.1 8.9 137 35-175 14-153 (176)
145 4h09_A Hypothetical leucine ri 99.5 1.1E-11 3.7E-16 129.1 25.8 307 11-337 40-359 (379)
146 3g39_A Variable lymphocyte rec 99.4 4.1E-13 1.4E-17 122.1 11.6 107 18-126 10-116 (170)
147 2r9u_A Variable lymphocyte rec 99.4 6.5E-13 2.2E-17 121.2 11.7 106 19-126 14-119 (174)
148 1ds9_A Outer arm dynein; leuci 99.3 3.1E-15 1.1E-19 140.4 -10.3 42 440-481 112-154 (198)
149 3un9_A NLR family member X1; l 99.3 3.8E-13 1.3E-17 138.6 3.0 161 213-373 101-282 (372)
150 1ds9_A Outer arm dynein; leuci 99.3 3.9E-14 1.3E-18 132.8 -5.9 117 29-151 37-153 (198)
151 3un9_A NLR family member X1; l 99.2 1.4E-12 4.6E-17 134.4 1.8 161 40-200 72-251 (372)
152 2ifg_A High affinity nerve gro 99.2 5E-11 1.7E-15 122.4 10.9 105 20-126 11-117 (347)
153 3rfe_A Platelet glycoprotein I 98.9 4.2E-09 1.4E-13 90.0 9.1 70 471-546 12-83 (130)
154 2ra8_A Uncharacterized protein 98.6 2.7E-08 9.2E-13 101.4 6.6 84 236-321 250-341 (362)
155 2ra8_A Uncharacterized protein 98.6 4.4E-08 1.5E-12 99.8 7.6 137 234-374 168-320 (362)
156 1io0_A Tropomodulin; LRR prote 98.3 4.2E-07 1.4E-11 83.3 5.7 68 209-276 32-107 (185)
157 1io0_A Tropomodulin; LRR prote 98.3 3.1E-07 1E-11 84.2 3.9 90 234-323 32-136 (185)
158 3rw6_A Nuclear RNA export fact 98.2 9.6E-07 3.3E-11 85.0 5.1 81 441-524 168-257 (267)
159 3rw6_A Nuclear RNA export fact 98.2 6.3E-07 2.2E-11 86.3 2.6 83 61-145 167-258 (267)
160 3e4g_A ATP synthase subunit S, 97.8 9.4E-06 3.2E-10 72.2 3.8 34 311-344 115-149 (176)
161 3e4g_A ATP synthase subunit S, 97.8 1.4E-05 4.8E-10 71.1 4.6 82 239-320 62-149 (176)
162 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00045 1.5E-08 62.6 6.8 87 87-173 69-168 (197)
163 1pgv_A TMD-1, tropomodulin TMD 97.2 0.00092 3.1E-08 60.6 8.7 85 211-295 39-135 (197)
164 3rfe_A Platelet glycoprotein I 97.1 0.00082 2.8E-08 56.9 6.5 57 420-481 11-69 (130)
165 4gt4_A Tyrosine-protein kinase 96.9 5.5E-05 1.9E-09 75.1 -2.9 30 641-670 32-67 (308)
166 3hmm_A TGF-beta receptor type- 96.8 0.00013 4.5E-09 72.4 -1.3 33 641-674 9-41 (303)
167 3uim_A Brassinosteroid insensi 95.9 0.00054 1.9E-08 68.8 -2.9 50 626-675 17-70 (326)
168 4g31_A Eukaryotic translation 95.9 0.00059 2E-08 67.4 -2.7 40 641-680 11-51 (299)
169 4aoj_A High affinity nerve gro 95.8 0.00065 2.2E-08 68.0 -2.6 31 640-670 46-82 (329)
170 4asz_A BDNF/NT-3 growth factor 95.7 0.00072 2.4E-08 66.7 -2.7 30 641-670 19-54 (299)
171 4ase_A Vascular endothelial gr 95.2 0.0014 4.9E-08 66.1 -2.6 36 641-676 70-111 (353)
172 2qkw_B Protein kinase; three-h 95.0 0.002 7E-08 64.4 -2.3 43 628-670 28-74 (321)
173 3omv_A RAF proto-oncogene seri 94.9 0.0019 6.6E-08 63.7 -2.7 26 641-668 42-67 (307)
174 4aw0_A HPDK1, 3-phosphoinositi 94.8 0.0028 9.5E-08 62.5 -1.9 31 641-671 38-69 (311)
175 4b9d_A Serine/threonine-protei 94.7 0.0022 7.7E-08 64.3 -2.9 30 641-670 30-60 (350)
176 3fpq_A Serine/threonine-protei 94.5 0.0037 1.3E-07 61.1 -1.7 30 641-670 32-62 (290)
177 3hyh_A Carbon catabolite-derep 94.5 0.0029 1E-07 61.2 -2.5 30 641-670 19-49 (275)
178 3dzo_A Rhoptry kinase domain; 94.2 0.0033 1.1E-07 65.4 -3.1 30 639-668 82-112 (413)
179 4g3f_A NF-kappa-beta-inducing 93.9 0.0044 1.5E-07 61.8 -2.6 31 641-671 64-95 (336)
180 4fih_A Serine/threonine-protei 93.8 0.0061 2.1E-07 61.0 -1.9 30 641-670 80-110 (346)
181 3q4u_A Activin receptor type-1 93.7 0.0077 2.6E-07 59.4 -1.3 31 641-672 14-44 (301)
182 3soc_A Activin receptor type-2 93.6 0.0089 3.1E-07 59.7 -1.1 35 641-676 30-64 (322)
183 3qd2_B Eukaryotic translation 93.6 0.0049 1.7E-07 61.8 -3.2 29 641-669 12-41 (332)
184 2nru_A Interleukin-1 receptor- 93.4 0.0044 1.5E-07 61.4 -3.7 43 626-669 12-64 (307)
185 3gxj_A TGF-beta receptor type- 93.4 0.0099 3.4E-07 58.7 -1.1 33 640-673 8-40 (303)
186 2qol_A Ephrin receptor; recept 93.4 0.0073 2.5E-07 61.8 -2.2 32 639-670 49-84 (373)
187 3p1a_A MYT1 kinase, membrane-a 93.2 0.0057 1.9E-07 60.8 -3.3 28 641-668 63-91 (311)
188 3g2f_A Bone morphogenetic prot 93.1 0.012 4.1E-07 59.1 -1.1 35 641-676 19-53 (336)
189 3kul_A Ephrin type-A receptor 93.1 0.007 2.4E-07 60.6 -2.8 35 641-675 55-93 (325)
190 3cbl_A C-FES, proto-oncogene t 93.1 0.0079 2.7E-07 61.6 -2.5 30 641-670 120-150 (377)
191 3vhe_A Vascular endothelial gr 93.0 0.0082 2.8E-07 61.0 -2.5 38 641-678 28-71 (359)
192 4b99_A Mitogen-activated prote 93.0 0.0088 3E-07 61.5 -2.3 29 641-669 60-89 (398)
193 3e7e_A HBUB1, BUB1A, mitotic c 92.8 0.01 3.6E-07 60.4 -2.0 35 641-675 71-111 (365)
194 4euu_A Serine/threonine-protei 92.8 0.011 3.6E-07 59.1 -2.1 32 641-672 15-47 (319)
195 3kn6_A Ribosomal protein S6 ki 92.7 0.013 4.6E-07 58.5 -1.3 40 639-678 15-55 (325)
196 4fie_A Serine/threonine-protei 92.4 0.011 3.7E-07 60.9 -2.5 30 641-670 157-187 (423)
197 3zgw_A Maternal embryonic leuc 92.3 0.009 3.1E-07 60.3 -3.2 31 641-671 16-47 (347)
198 4eut_A Serine/threonine-protei 92.3 0.013 4.5E-07 60.5 -2.1 32 641-672 15-47 (396)
199 4gyi_A RIO2 kinase; protein ki 92.2 0.0094 3.2E-07 60.4 -3.3 28 641-668 101-128 (397)
200 3tki_A Serine/threonine-protei 92.1 0.01 3.5E-07 59.3 -3.2 31 641-671 13-44 (323)
201 3an0_A Dual specificity mitoge 92.1 0.011 3.8E-07 59.5 -3.0 30 641-670 57-87 (340)
202 3llt_A Serine/threonine kinase 92.0 0.02 6.9E-07 58.1 -1.2 44 626-669 22-70 (360)
203 2c30_A Serine/threonine-protei 91.9 0.012 4E-07 58.8 -2.9 30 641-670 51-81 (321)
204 1luf_A Muscle-specific tyrosin 91.9 0.013 4.3E-07 59.2 -2.8 38 641-678 53-96 (343)
205 1zar_A RIO2 kinase; serine kin 91.8 0.019 6.5E-07 56.0 -1.6 29 641-669 96-124 (282)
206 3lxp_A Non-receptor tyrosine-p 91.7 0.013 4.5E-07 58.3 -2.9 31 641-671 37-72 (318)
207 3ubd_A Ribosomal protein S6 ki 91.7 0.0083 2.8E-07 59.0 -4.3 31 641-671 30-64 (304)
208 3fme_A Dual specificity mitoge 91.7 0.017 5.7E-07 56.6 -2.2 34 641-674 13-47 (290)
209 2psq_A Fibroblast growth facto 91.6 0.014 4.7E-07 59.7 -2.9 31 641-671 87-125 (370)
210 1t46_A HOMO sapiens V-KIT hard 91.6 0.014 4.9E-07 57.8 -2.8 31 641-671 29-65 (313)
211 2pvf_A Fibroblast growth facto 91.5 0.018 6E-07 57.9 -2.2 30 641-670 41-78 (334)
212 3mtl_A Cell division protein k 91.5 0.013 4.6E-07 58.5 -3.0 34 641-674 8-42 (324)
213 4e5w_A Tyrosine-protein kinase 91.5 0.014 4.9E-07 57.5 -2.8 31 641-671 27-62 (302)
214 3q60_A ROP5B; pseudokinase, tr 91.5 0.018 6.1E-07 58.8 -2.3 32 640-671 67-99 (371)
215 1u59_A Tyrosine-protein kinase 91.4 0.013 4.4E-07 57.4 -3.2 30 641-670 16-48 (287)
216 3niz_A Rhodanese family protei 91.4 0.016 5.6E-07 57.4 -2.5 30 641-670 27-56 (311)
217 2xir_A Vascular endothelial gr 91.1 0.018 6.3E-07 57.1 -2.5 31 641-671 33-69 (316)
218 3tt0_A Basic fibroblast growth 91.1 0.017 5.9E-07 59.2 -2.8 31 641-671 75-113 (382)
219 3l9p_A Anaplastic lymphoma kin 91.0 0.016 5.5E-07 59.1 -3.1 29 641-669 77-111 (367)
220 3mdy_A Bone morphogenetic prot 91.0 0.027 9.3E-07 56.5 -1.4 29 641-670 43-71 (337)
221 4aw2_A Serine/threonine-protei 91.0 0.026 9E-07 58.8 -1.5 31 641-671 80-111 (437)
222 3aln_A Dual specificity mitoge 91.0 0.018 6.1E-07 57.6 -2.8 30 641-670 28-58 (327)
223 2yfx_A Tyrosine-protein kinase 91.0 0.022 7.5E-07 56.9 -2.1 30 641-670 36-71 (327)
224 3f66_A Hepatocyte growth facto 90.9 0.022 7.4E-07 56.1 -2.2 32 641-672 31-66 (298)
225 1p4o_A Insulin-like growth fac 90.8 0.029 1E-06 55.8 -1.4 30 641-670 31-66 (322)
226 3cek_A Dual specificity protei 90.7 0.013 4.6E-07 58.1 -4.0 29 641-669 34-62 (313)
227 2yex_A Serine/threonine-protei 90.7 0.023 8E-07 55.0 -2.2 31 641-671 13-44 (276)
228 3dbq_A Dual specificity protei 90.7 0.018 6E-07 58.1 -3.2 29 641-669 15-43 (343)
229 1b6c_B TGF-B superfamily recep 90.6 0.031 1.1E-06 56.1 -1.3 31 641-672 48-78 (342)
230 3nsz_A CK II alpha, casein kin 90.6 0.025 8.6E-07 56.5 -2.1 31 641-671 42-73 (330)
231 3fhr_A MAP kinase-activated pr 90.6 0.027 9.1E-07 56.6 -1.9 30 641-670 35-65 (336)
232 3a7i_A MST3 kinase, serine/thr 90.5 0.021 7.3E-07 56.3 -2.7 31 641-671 28-59 (303)
233 3a99_A Proto-oncogene serine/t 90.5 0.016 5.3E-07 57.9 -3.7 31 641-671 49-80 (320)
234 3pls_A Macrophage-stimulating 90.5 0.021 7.3E-07 56.0 -2.7 33 640-672 26-62 (298)
235 2zmd_A Dual specificity protei 90.4 0.02 6.7E-07 58.9 -3.1 29 641-669 62-90 (390)
236 3poz_A Epidermal growth factor 90.4 0.032 1.1E-06 55.7 -1.5 30 641-670 21-55 (327)
237 3v5w_A G-protein coupled recep 90.4 0.023 7.9E-07 61.8 -2.7 33 641-673 195-228 (689)
238 3qyz_A Mitogen-activated prote 90.3 0.027 9.3E-07 57.3 -2.1 30 641-670 33-63 (364)
239 2vuw_A Serine/threonine-protei 90.3 0.023 7.9E-07 57.0 -2.6 29 641-670 26-54 (336)
240 4f9c_A Cell division cycle 7-r 90.3 0.024 8.3E-07 57.4 -2.5 29 641-669 27-59 (361)
241 3kmu_A ILK, integrin-linked ki 90.2 0.021 7.1E-07 55.1 -3.0 29 641-670 16-44 (271)
242 2ivs_A Proto-oncogene tyrosine 90.2 0.023 7.9E-07 56.3 -2.8 31 641-671 29-65 (314)
243 1mp8_A Focal adhesion kinase 1 90.2 0.026 8.8E-07 55.0 -2.4 30 641-670 21-54 (281)
244 1rjb_A FL cytokine receptor; k 90.0 0.022 7.7E-07 57.3 -3.1 31 641-671 51-87 (344)
245 3c1x_A Hepatocyte growth facto 90.0 0.022 7.4E-07 58.2 -3.2 30 641-670 95-128 (373)
246 4hcu_A Tyrosine-protein kinase 89.8 0.026 8.9E-07 54.5 -2.7 30 641-670 16-45 (269)
247 3sxs_A Cytoplasmic tyrosine-pr 89.8 0.025 8.7E-07 54.5 -2.7 31 641-671 14-44 (268)
248 3cc6_A Protein tyrosine kinase 89.8 0.029 9.8E-07 54.6 -2.4 31 641-671 18-52 (281)
249 1u5q_A Serine/threonine protei 89.8 0.031 1.1E-06 56.4 -2.2 29 641-669 60-89 (348)
250 2rio_A Serine/threonine-protei 89.8 0.037 1.3E-06 57.8 -1.7 33 640-672 20-52 (434)
251 1zth_A RIO1 serine protein kin 89.7 0.033 1.1E-06 53.4 -2.0 27 641-667 53-82 (258)
252 3eqc_A Dual specificity mitoge 89.7 0.027 9.1E-07 57.2 -2.8 30 641-670 39-69 (360)
253 3byv_A Rhoptry kinase; malaria 89.7 0.023 7.8E-07 58.2 -3.4 28 641-668 79-107 (377)
254 3fxz_A Serine/threonine-protei 89.6 0.032 1.1E-06 54.9 -2.3 30 641-670 26-56 (297)
255 2vx3_A Dual specificity tyrosi 89.6 0.037 1.3E-06 56.7 -1.8 29 641-669 60-89 (382)
256 2ozo_A Tyrosine-protein kinase 89.6 0.022 7.6E-07 62.4 -3.7 29 642-670 343-374 (613)
257 3p86_A Serine/threonine-protei 89.6 0.024 8.2E-07 56.2 -3.2 29 641-670 43-71 (309)
258 2b9h_A MAP kinase FUS3, mitoge 89.5 0.029 1E-06 56.7 -2.6 28 641-668 17-45 (353)
259 3is5_A Calcium-dependent prote 89.5 0.028 9.6E-07 54.9 -2.7 33 641-673 28-61 (285)
260 2vwi_A Serine/threonine-protei 89.4 0.031 1E-06 55.0 -2.6 38 641-678 21-59 (303)
261 2iwi_A Serine/threonine-protei 89.4 0.032 1.1E-06 55.2 -2.4 31 641-671 37-68 (312)
262 3uqc_A Probable conserved tran 89.4 0.033 1.1E-06 54.4 -2.3 30 641-670 37-67 (286)
263 3fe3_A MAP/microtubule affinit 89.4 0.038 1.3E-06 55.2 -1.9 30 641-670 21-51 (328)
264 1ob3_A PFPK5, cell division co 89.3 0.025 8.6E-07 55.3 -3.3 29 641-669 8-36 (288)
265 3gen_A Tyrosine-protein kinase 89.3 0.026 9E-07 54.9 -3.1 30 641-670 30-59 (283)
266 1xjd_A Protein kinase C, theta 89.2 0.038 1.3E-06 55.7 -2.1 31 641-671 23-54 (345)
267 3h4j_B AMPK kdaid, SNF1-like p 89.2 0.036 1.2E-06 55.6 -2.3 32 641-672 15-47 (336)
268 3ork_A Serine/threonine protei 89.1 0.034 1.1E-06 55.1 -2.5 30 641-670 18-48 (311)
269 3dtc_A Mitogen-activated prote 89.1 0.037 1.3E-06 53.4 -2.2 30 640-670 12-41 (271)
270 2clq_A Mitogen-activated prote 89.1 0.038 1.3E-06 54.1 -2.1 33 638-670 25-58 (295)
271 1qpc_A LCK kinase; alpha beta 89.1 0.031 1.1E-06 54.3 -2.7 30 641-670 19-48 (279)
272 2zv2_A Calcium/calmodulin-depe 89.1 0.03 1E-06 55.0 -2.9 30 641-670 19-49 (298)
273 2vd5_A DMPK protein; serine/th 89.0 0.052 1.8E-06 56.1 -1.2 30 641-670 67-97 (412)
274 1qcf_A Haematopoetic cell kina 88.9 0.033 1.1E-06 58.6 -3.0 29 641-669 194-222 (454)
275 3c0i_A Peripheral plasma membr 88.8 0.048 1.7E-06 55.1 -1.6 32 641-672 30-62 (351)
276 3pg1_A Mitogen-activated prote 88.8 0.027 9.1E-07 57.3 -3.6 29 641-669 28-56 (362)
277 1mqb_A Ephrin type-A receptor 88.8 0.041 1.4E-06 55.1 -2.1 31 640-670 49-84 (333)
278 2x4f_A Myosin light chain kina 88.8 0.034 1.1E-06 56.8 -2.8 33 639-671 93-126 (373)
279 3kvw_A DYRK2, dual specificity 88.7 0.048 1.6E-06 56.9 -1.8 30 641-670 103-133 (429)
280 3cok_A Serine/threonine-protei 88.7 0.049 1.7E-06 52.8 -1.6 31 641-671 17-48 (278)
281 2dyl_A Dual specificity mitoge 88.6 0.03 1E-06 55.6 -3.3 31 640-670 30-61 (318)
282 2pml_X PFPK7, Ser/Thr protein 88.5 0.038 1.3E-06 55.7 -2.6 32 641-673 37-68 (348)
283 3txo_A PKC-L, NPKC-ETA, protei 88.5 0.039 1.3E-06 55.8 -2.5 30 641-670 29-59 (353)
284 4ejn_A RAC-alpha serine/threon 88.5 0.054 1.8E-06 56.8 -1.6 31 641-671 154-185 (446)
285 3op5_A Serine/threonine-protei 88.3 0.037 1.3E-06 56.3 -2.9 31 641-671 41-77 (364)
286 2y7j_A Phosphorylase B kinase 88.3 0.049 1.7E-06 55.4 -2.0 29 641-669 100-129 (365)
287 3ugc_A Tyrosine-protein kinase 88.2 0.04 1.4E-06 54.0 -2.7 29 641-669 16-49 (295)
288 1o6l_A RAC-beta serine/threoni 88.2 0.049 1.7E-06 54.6 -2.1 31 641-671 11-42 (337)
289 3a62_A Ribosomal protein S6 ki 88.0 0.041 1.4E-06 54.9 -2.7 30 641-670 23-56 (327)
290 2eue_A Carbon catabolite derep 88.0 0.034 1.2E-06 53.9 -3.3 30 641-670 19-49 (275)
291 2i0e_A Protein kinase C-beta I 87.9 0.041 1.4E-06 55.6 -2.9 31 641-671 26-57 (353)
292 3v8s_A RHO-associated protein 87.8 0.054 1.9E-06 55.9 -2.1 31 641-671 75-106 (410)
293 1j1b_A Glycogen synthase kinas 87.8 0.043 1.5E-06 57.0 -2.8 29 640-668 59-88 (420)
294 1wak_A Serine/threonine-protei 87.8 0.063 2.2E-06 55.1 -1.6 29 641-669 43-72 (397)
295 4f0f_A Serine/threonine-protei 87.8 0.034 1.2E-06 54.2 -3.5 29 641-669 25-54 (287)
296 3a8x_A Protein kinase C IOTA t 87.7 0.057 2E-06 54.4 -1.9 30 641-670 15-45 (345)
297 1xbb_A Tyrosine-protein kinase 87.7 0.043 1.5E-06 53.7 -2.7 30 641-670 23-55 (291)
298 2pzi_A Probable serine/threoni 87.7 0.051 1.7E-06 60.5 -2.5 30 641-670 86-117 (681)
299 1vzo_A Ribosomal protein S6 ki 87.7 0.03 1E-06 56.7 -4.0 29 641-669 60-92 (355)
300 2x7f_A TRAF2 and NCK-interacti 87.6 0.047 1.6E-06 54.4 -2.6 40 630-669 15-59 (326)
301 3kex_A Receptor tyrosine-prote 87.6 0.032 1.1E-06 55.7 -3.9 28 641-668 19-51 (325)
302 2pmi_A Negative RE, cyclin-dep 87.5 0.029 1E-06 55.8 -4.2 30 641-670 11-41 (317)
303 1ua2_A CAK, cell division prot 87.5 0.033 1.1E-06 56.2 -3.9 31 641-671 16-47 (346)
304 3qup_A Tyrosine-protein kinase 87.5 0.063 2.2E-06 53.4 -1.8 30 641-670 29-62 (323)
305 2y94_A 5'-AMP-activated protei 87.5 0.064 2.2E-06 56.6 -1.8 32 641-672 22-54 (476)
306 3ll6_A Cyclin G-associated kin 87.4 0.054 1.8E-06 54.2 -2.4 27 641-667 34-61 (337)
307 3eb0_A Putative uncharacterize 87.2 0.051 1.8E-06 55.6 -2.7 29 641-669 13-42 (383)
308 2w4o_A Calcium/calmodulin-depe 87.1 0.051 1.7E-06 54.8 -2.7 30 641-670 59-89 (349)
309 3t9t_A Tyrosine-protein kinase 87.1 0.051 1.8E-06 52.2 -2.6 30 641-670 14-43 (267)
310 3bhy_A Death-associated protei 87.1 0.025 8.7E-07 55.0 -4.8 30 641-670 11-41 (283)
311 1fot_A TPK1 delta, CAMP-depend 87.1 0.051 1.8E-06 54.0 -2.7 31 641-671 12-43 (318)
312 3p23_A Serine/threonine-protei 87.1 0.044 1.5E-06 57.1 -3.3 34 640-673 29-62 (432)
313 2a19_B Interferon-induced, dou 87.0 0.056 1.9E-06 52.5 -2.4 30 641-670 17-47 (284)
314 2ac3_A MAP kinase-interacting 87.0 0.039 1.3E-06 54.7 -3.6 30 641-670 19-49 (316)
315 1z57_A Dual specificity protei 86.9 0.07 2.4E-06 53.3 -1.8 29 641-669 20-50 (339)
316 2r5t_A Serine/threonine-protei 86.9 0.063 2.1E-06 54.7 -2.2 31 641-671 44-75 (373)
317 2i1m_A Macrophage colony-stimu 86.9 0.054 1.8E-06 54.2 -2.7 31 641-671 52-88 (333)
318 3kfa_A Tyrosine-protein kinase 86.8 0.066 2.3E-06 52.2 -2.0 30 641-670 19-49 (288)
319 2fst_X Mitogen-activated prote 86.8 0.039 1.3E-06 56.2 -3.8 29 641-669 35-64 (367)
320 2i6l_A Mitogen-activated prote 86.7 0.051 1.7E-06 53.9 -2.9 29 641-669 17-46 (320)
321 2yab_A Death-associated protei 86.7 0.028 9.6E-07 57.0 -4.9 32 641-672 18-50 (361)
322 3qa8_A MGC80376 protein; kinas 86.6 0.058 2E-06 59.0 -2.7 30 641-670 20-50 (676)
323 3g33_A Cell division protein k 86.6 0.021 7.3E-07 56.5 -5.8 28 641-668 15-43 (308)
324 4aaa_A Cyclin-dependent kinase 86.5 0.046 1.6E-06 54.7 -3.4 41 629-669 19-60 (331)
325 2acx_A G protein-coupled recep 86.5 0.082 2.8E-06 56.9 -1.7 32 641-672 190-222 (576)
326 4exu_A Mitogen-activated prote 86.4 0.061 2.1E-06 54.8 -2.6 29 641-669 48-77 (371)
327 2h34_A Serine/threonine-protei 86.4 0.09 3.1E-06 51.9 -1.3 30 641-670 40-70 (309)
328 2h6d_A 5'-AMP-activated protei 86.3 0.083 2.8E-06 51.0 -1.6 31 641-671 17-48 (276)
329 4agu_A Cyclin-dependent kinase 86.3 0.042 1.4E-06 54.3 -3.8 29 641-669 9-38 (311)
330 3lxl_A Tyrosine-protein kinase 86.3 0.061 2.1E-06 53.6 -2.7 30 641-670 29-63 (327)
331 3fdn_A Serine/threonine-protei 86.2 0.091 3.1E-06 50.9 -1.4 31 641-671 15-46 (279)
332 3s95_A LIMK-1, LIM domain kina 86.2 0.065 2.2E-06 52.9 -2.5 29 640-668 15-44 (310)
333 3gbz_A Kinase, CMGC CDK; ssgci 86.1 0.054 1.9E-06 54.1 -3.1 30 641-670 40-70 (329)
334 1fmk_A C-SRC, P60-SRC, tyrosin 86.1 0.085 2.9E-06 55.3 -1.7 30 641-670 190-219 (452)
335 3o0g_A Cell division protein k 86.1 0.048 1.7E-06 53.3 -3.5 30 641-670 8-38 (292)
336 2a2a_A Death-associated protei 86.1 0.029 1E-06 55.8 -5.1 31 641-671 18-49 (321)
337 2rku_A Serine/threonine-protei 86.1 0.079 2.7E-06 51.8 -1.9 31 640-670 20-51 (294)
338 1k9a_A Carboxyl-terminal SRC k 86.1 0.064 2.2E-06 56.3 -2.7 29 641-670 199-227 (450)
339 3m2w_A MAP kinase-activated pr 86.0 0.08 2.7E-06 52.0 -1.9 29 641-669 24-53 (299)
340 3ttj_A Mitogen-activated prote 85.9 0.08 2.7E-06 55.8 -2.1 30 641-670 68-98 (464)
341 1csn_A Casein kinase-1; phosph 85.9 0.059 2E-06 52.8 -2.9 28 641-668 16-44 (298)
342 4fl3_A Tyrosine-protein kinase 85.9 0.075 2.6E-06 58.4 -2.4 31 641-671 375-408 (635)
343 3rgf_A Cyclin-dependent kinase 85.7 0.054 1.9E-06 55.9 -3.5 30 641-670 27-59 (405)
344 2vgo_A Serine/threonine-protei 85.7 0.097 3.3E-06 50.9 -1.5 31 641-671 20-51 (284)
345 3coi_A Mitogen-activated prote 85.6 0.071 2.4E-06 53.8 -2.6 29 641-669 30-59 (353)
346 2buj_A Serine/threonine-protei 85.6 0.067 2.3E-06 53.0 -2.7 28 641-668 35-63 (317)
347 1rdq_E PKA C-alpha, CAMP-depen 85.6 0.096 3.3E-06 52.8 -1.6 31 641-671 47-78 (350)
348 2izr_A Casein kinase I isoform 85.6 0.084 2.9E-06 52.7 -2.0 29 641-669 15-44 (330)
349 1x8b_A WEE1HU, WEE1-like prote 85.5 0.055 1.9E-06 52.6 -3.4 29 641-669 17-46 (289)
350 3og7_A AKAP9-BRAF fusion prote 85.4 0.063 2.1E-06 52.4 -3.0 27 641-669 30-56 (289)
351 2y0a_A Death-associated protei 85.3 0.035 1.2E-06 55.4 -5.0 31 641-671 17-48 (326)
352 3c4z_A Rhodopsin kinase; Ser/T 85.3 0.1 3.5E-06 55.8 -1.6 32 641-672 191-223 (543)
353 4hgt_A Casein kinase I isoform 85.3 0.072 2.5E-06 52.1 -2.7 28 641-668 15-43 (296)
354 2w1i_A JAK2; chromosomal rearr 85.1 0.068 2.3E-06 53.3 -3.0 29 641-669 47-80 (326)
355 1zy4_A Serine/threonine-protei 85.1 0.083 2.8E-06 51.8 -2.3 29 641-669 12-41 (303)
356 3uzp_A CKI-delta, CKID, casein 85.1 0.065 2.2E-06 52.4 -3.1 29 641-669 15-44 (296)
357 2r3i_A Cell division protein k 85.1 0.064 2.2E-06 52.6 -3.2 30 641-670 9-39 (299)
358 1q8y_A SR protein kinase; tran 85.1 0.11 3.6E-06 52.9 -1.6 28 641-668 25-53 (373)
359 3lm5_A Serine/threonine-protei 85.1 0.05 1.7E-06 54.3 -4.0 30 641-670 35-65 (327)
360 2wtk_C Serine/threonine-protei 85.1 0.11 3.9E-06 50.9 -1.3 32 641-672 11-43 (305)
361 1phk_A Phosphorylase kinase; g 85.0 0.11 3.9E-06 50.7 -1.4 28 641-668 23-51 (298)
362 2xrw_A Mitogen-activated prote 85.0 0.077 2.6E-06 54.0 -2.7 29 641-669 31-60 (371)
363 2owb_A Serine/threonine-protei 84.9 0.098 3.4E-06 52.3 -1.9 30 641-670 47-77 (335)
364 1nxk_A MAP kinase-activated pr 84.8 0.1 3.4E-06 53.8 -1.9 28 641-668 68-96 (400)
365 3mi9_A Cell division protein k 84.8 0.037 1.3E-06 55.9 -5.2 30 641-670 23-53 (351)
366 3dls_A PAS domain-containing s 84.7 0.097 3.3E-06 52.4 -2.0 31 641-671 30-61 (335)
367 4fr4_A YANK1, serine/threonine 84.7 0.11 3.9E-06 53.0 -1.6 31 641-671 21-52 (384)
368 2eva_A TAK1 kinase - TAB1 chim 84.7 0.1 3.4E-06 51.5 -1.9 29 640-669 13-41 (307)
369 3kk8_A Calcium/calmodulin depe 84.6 0.084 2.9E-06 51.3 -2.5 31 641-671 12-43 (284)
370 3sv0_A Casein kinase I-like; t 84.6 0.12 4E-06 54.6 -1.6 29 641-669 13-42 (483)
371 2lz0_A Uncharacterized protein 84.5 2 6.8E-05 33.8 6.0 46 51-97 7-52 (100)
372 3i6u_A CDS1, serine/threonine- 84.5 0.11 3.7E-06 53.9 -1.9 31 641-671 141-172 (419)
373 2eu9_A Dual specificity protei 84.4 0.083 2.8E-06 53.2 -2.7 29 641-669 25-55 (355)
374 2h8h_A Proto-oncogene tyrosine 84.3 0.12 4E-06 55.6 -1.7 30 641-670 273-302 (535)
375 3e3p_A Protein kinase, putativ 84.2 0.041 1.4E-06 55.7 -5.1 30 640-669 28-58 (360)
376 2lz0_A Uncharacterized protein 84.1 1.5 5.1E-05 34.5 5.1 48 27-75 6-54 (100)
377 2j7t_A Serine/threonine-protei 84.0 0.088 3E-06 51.7 -2.7 30 641-670 25-55 (302)
378 3oz6_A Mitogen-activated prote 84.0 0.075 2.6E-06 54.5 -3.3 28 641-668 15-43 (388)
379 3hko_A Calcium/calmodulin-depe 83.8 0.11 3.6E-06 52.2 -2.2 31 641-671 32-63 (345)
380 2jii_A Serine/threonine-protei 83.5 0.12 4E-06 52.2 -2.1 30 641-670 48-86 (352)
381 4dc2_A Protein kinase C IOTA t 83.5 0.11 3.8E-06 53.3 -2.2 31 641-671 58-89 (396)
382 4eqm_A Protein kinase; transfe 83.5 0.16 5.4E-06 49.7 -1.1 27 641-667 17-44 (294)
383 3lzb_A Epidermal growth factor 83.5 0.077 2.6E-06 52.9 -3.4 25 641-665 21-46 (327)
384 4fvq_A Tyrosine-protein kinase 83.4 0.11 3.9E-06 50.4 -2.1 30 641-670 14-51 (289)
385 2wei_A Calmodulin-domain prote 83.4 0.069 2.4E-06 52.1 -3.8 30 641-670 28-58 (287)
386 2ycf_A Serine/threonine-protei 83.4 0.11 3.6E-06 51.7 -2.4 31 641-671 16-47 (322)
387 2w5a_A Serine/threonine-protei 83.3 0.069 2.4E-06 51.7 -3.8 29 641-669 12-41 (279)
388 1blx_A Cyclin-dependent kinase 83.3 0.13 4.5E-06 51.0 -1.8 29 641-669 17-47 (326)
389 1opk_A P150, C-ABL, proto-onco 83.2 0.13 4.3E-06 54.7 -2.0 29 641-669 226-255 (495)
390 2wqm_A Serine/threonine-protei 83.2 0.1 3.4E-06 51.5 -2.7 30 640-669 37-67 (310)
391 3brb_A Proto-oncogene tyrosine 82.9 0.085 2.9E-06 52.1 -3.3 30 641-670 40-73 (313)
392 2qr7_A Ribosomal protein S6 ki 82.9 0.1 3.4E-06 52.5 -2.8 31 641-671 28-59 (342)
393 3mwu_A Calmodulin-domain prote 82.9 0.11 3.6E-06 55.2 -2.8 31 641-671 28-59 (486)
394 4e7w_A Glycogen synthase kinas 82.9 0.1 3.6E-06 53.6 -2.8 29 640-668 45-73 (394)
395 3uto_A Twitchin; kinase, muscl 82.8 0.12 4E-06 56.0 -2.5 29 641-669 163-192 (573)
396 2v62_A Serine/threonine-protei 82.7 0.098 3.4E-06 52.6 -3.0 30 641-670 43-76 (345)
397 2j0j_A Focal adhesion kinase 1 82.7 0.11 3.8E-06 57.3 -2.9 30 641-670 396-429 (656)
398 1t4h_A Serine/threonine-protei 82.6 0.12 4.3E-06 50.2 -2.2 30 641-670 32-62 (290)
399 3uc3_A Serine/threonine-protei 82.4 0.093 3.2E-06 53.2 -3.3 29 641-669 26-55 (361)
400 1cm8_A Phosphorylated MAP kina 82.3 0.091 3.1E-06 53.4 -3.5 29 641-669 31-60 (367)
401 3nyv_A Calmodulin-domain prote 82.3 0.1 3.5E-06 55.3 -3.2 30 641-670 32-62 (484)
402 1tki_A Titin; serine kinase, m 82.2 0.12 4.2E-06 51.3 -2.5 29 641-669 11-40 (321)
403 2jam_A Calcium/calmodulin-depe 81.8 0.12 4.1E-06 50.8 -2.7 29 641-669 15-44 (304)
404 3rp9_A Mitogen-activated prote 81.6 0.11 3.7E-06 54.7 -3.4 29 641-669 59-88 (458)
405 3soa_A Calcium/calmodulin-depe 81.6 0.13 4.4E-06 53.8 -2.7 30 641-670 17-47 (444)
406 3gni_B Strad alpha; kinase fol 81.6 0.14 4.7E-06 52.5 -2.5 31 641-671 31-64 (389)
407 3n9x_A Phosphotransferase; mal 81.3 0.14 4.8E-06 53.3 -2.5 29 641-669 32-61 (432)
408 3pfq_A PKC-B, PKC-beta, protei 81.1 0.13 4.3E-06 57.0 -3.1 31 641-671 347-378 (674)
409 1kob_A Twitchin; kinase, intra 81.0 0.14 5E-06 52.3 -2.5 29 641-669 57-86 (387)
410 1byg_A CSK, protein (C-termina 81.0 0.18 6.2E-06 48.7 -1.7 28 641-669 27-54 (278)
411 1u46_A ACK-1, activated CDC42 80.9 0.14 4.9E-06 49.7 -2.5 30 641-670 24-57 (291)
412 3lb7_A RAF proto-oncogene seri 80.4 0.13 4.6E-06 50.6 -2.9 26 641-668 42-67 (307)
413 2bdw_A Hypothetical protein K1 80.3 0.14 4.7E-06 51.9 -2.9 30 641-670 35-65 (362)
414 1fvr_A Tyrosine-protein kinase 80.0 0.14 4.7E-06 51.0 -3.1 30 640-669 30-62 (327)
415 3q5i_A Protein kinase; CDPK, m 79.0 0.18 6.1E-06 53.8 -2.8 31 641-671 42-73 (504)
416 3lij_A Calcium/calmodulin depe 76.8 0.2 6.8E-06 53.2 -3.1 31 641-671 43-74 (494)
417 3f3z_A Calcium/calmodulin-depe 76.8 0.24 8.2E-06 47.7 -2.3 29 641-669 15-44 (277)
418 3com_A Serine/threonine-protei 76.8 0.25 8.4E-06 48.7 -2.3 29 641-669 35-64 (314)
419 2y4i_B KSR2, HKSR2, kinase sup 74.0 0.2 6.7E-06 49.6 -3.9 29 640-670 38-66 (319)
420 3en9_A Glycoprotease, O-sialog 63.1 0.97 3.3E-05 48.4 -1.5 27 640-667 341-367 (540)
421 3d1u_A Putative fructosamine-3 35.8 3.5 0.00012 39.8 -2.5 27 641-667 21-47 (288)
422 3f7w_A Putative fructosamine-3 21.4 11 0.00038 36.1 -1.8 28 641-668 21-48 (288)
No 1
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.1e-55 Score=488.16 Aligned_cols=483 Identities=23% Similarity=0.324 Sum_probs=400.4
Q ss_pred CCceEEECcCCCCcchh-hhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeC
Q psy3329 17 PGLITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLML 95 (694)
Q Consensus 17 ~~L~~L~Ls~~~l~~i~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L 95 (694)
+++++|+|++|.++.++ ..|..+++|++|++++|.+..+.|.+|.++++|++|++++|.++.+.+..|+++++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 47999999999999885 78999999999999999999999999999999999999999999998888999999999999
Q ss_pred CCCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCc--EEeCCCCC
Q psy3329 96 NRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLR--NLNLAENE 173 (694)
Q Consensus 96 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~--~L~l~~n~ 173 (694)
++|.++++.+..+.++++|++|++++|.+..+.. + .+..+++|++|++++|.++.+.+..+..+++|+ .|++++|.
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~ 190 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKL-P-KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCC-C-TTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCc-c-cccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCc
Confidence 9999999888889999999999999999886422 2 344589999999999999999888889999999 89999998
Q ss_pred CCCcchhhhccc-----------------------------------------------C--CCcccEEeCCCCCCCCCC
Q psy3329 174 LIDLDVATTLGQ-----------------------------------------------N--LVHLDSLDLSNCHLKGPL 204 (694)
Q Consensus 174 l~~~~~~~~~~~-----------------------------------------------~--~~~L~~L~l~~n~~~~~~ 204 (694)
+.+.....+... . ..+|+.|++++|.+ ..+
T Consensus 191 l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l-~~~ 269 (606)
T 3t6q_A 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF-FNI 269 (606)
T ss_dssp CCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCC-SSC
T ss_pred cCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCcc-Ccc
Confidence 876554332110 0 01577777777777 455
Q ss_pred ChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccch-hhcC
Q psy3329 205 SEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFT-ALLS 283 (694)
Q Consensus 205 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~~~ 283 (694)
+...|..+++|+.|++++|.++..+. .+..+++|++|++++|.++.+++..+..+++|+.|++++|.+.+.++ ..+.
T Consensus 270 ~~~~~~~l~~L~~L~l~~n~l~~lp~--~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 347 (606)
T 3t6q_A 270 SSNTFHCFSGLQELDLTATHLSELPS--GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE 347 (606)
T ss_dssp CTTTTTTCTTCSEEECTTSCCSCCCS--SCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTT
T ss_pred CHHHhccccCCCEEeccCCccCCCCh--hhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhh
Confidence 55667788888888888888775432 35777888888888888888777778888888888888888775443 3477
Q ss_pred CCCCCcEEECcCCCCcccC--hhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCc-cccccCCCC
Q psy3329 284 PLESLEHLDMGYSNLQRIS--RSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNE-TVFHENYTY 360 (694)
Q Consensus 284 ~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~~ 360 (694)
.+++|++|++++|.++.+. +..+..+++|++|++++|.+.++.+..+..+++|+.|++++|.++...+ ..+. .+
T Consensus 348 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---~l 424 (606)
T 3t6q_A 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ---NL 424 (606)
T ss_dssp TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTT---TC
T ss_pred ccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhh---Cc
Confidence 7888888888888887765 5677788888888888888888777778888888888888888876533 3354 67
Q ss_pred CCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCccc---CCCCC
Q psy3329 361 PDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVL---PTGNL 437 (694)
Q Consensus 361 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~---~~~~~ 437 (694)
++|+.|++++|.+...+. .. +.. +++|++|++++|.+++. .+..+
T Consensus 425 ~~L~~L~l~~n~l~~~~~-----------~~------------------~~~---l~~L~~L~L~~n~l~~~~~~~~~~~ 472 (606)
T 3t6q_A 425 HLLKVLNLSHSLLDISSE-----------QL------------------FDG---LPALQHLNLQGNHFPKGNIQKTNSL 472 (606)
T ss_dssp TTCCEEECTTCCCBTTCT-----------TT------------------TTT---CTTCCEEECTTCBCGGGEECSSCGG
T ss_pred ccCCEEECCCCccCCcCH-----------HH------------------HhC---CCCCCEEECCCCCCCccccccchhh
Confidence 888888888887764332 11 223 89999999999999873 22445
Q ss_pred CCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccChhhhcCC
Q psy3329 438 LPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHN 517 (694)
Q Consensus 438 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~ 517 (694)
..+++|+.|+|++|.++++++..|.++++|+.|+|++|++++..|..+ ..++.| .|++++|++++.+|..+..+
T Consensus 473 --~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l---~~l~~L-~L~L~~N~l~~~~~~~~~~l 546 (606)
T 3t6q_A 473 --QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEAL---SHLKGI-YLNLASNHISIILPSLLPIL 546 (606)
T ss_dssp --GGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGG---TTCCSC-EEECCSSCCCCCCGGGHHHH
T ss_pred --ccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHh---Cccccc-EEECcCCcccccCHhhcccC
Confidence 889999999999999999999999999999999999999999999888 889999 99999999999999999999
Q ss_pred CcccEEEccCCccccccCcHHHHHHHHh
Q psy3329 518 RAITSIKLVGNPWKCDCNIADMWEWATR 545 (694)
Q Consensus 518 ~~l~~l~l~~N~~~c~c~~~~~~~~~~~ 545 (694)
++|+.+++++|||.|+|+..|+..|++.
T Consensus 547 ~~L~~L~l~~N~~~c~c~~~~~~~w~~~ 574 (606)
T 3t6q_A 547 SQQRTINLRQNPLDCTCSNIYFLEWYKE 574 (606)
T ss_dssp HTSSEEECTTCCEECSGGGHHHHHHHHH
T ss_pred CCCCEEeCCCCCccccCCcHHHHHHHHh
Confidence 9999999999999999999999999986
No 2
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.7e-54 Score=491.02 Aligned_cols=505 Identities=25% Similarity=0.325 Sum_probs=309.9
Q ss_pred CCceEEECcCCCCcchh-hhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeC
Q psy3329 17 PGLITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLML 95 (694)
Q Consensus 17 ~~L~~L~Ls~~~l~~i~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L 95 (694)
+++++|+|++|.++.++ ..|..+++|++|++++|.+.++.|.+|.++++|++|++++|.++.+++..|.++++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 34555555555555544 34555555555555555555555555555555555555555555554444555555555555
Q ss_pred CCCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccC--CCCCCcEEeCCCCC
Q psy3329 96 NRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFA--NNTWLRNLNLAENE 173 (694)
Q Consensus 96 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--~~~~L~~L~l~~n~ 173 (694)
++|.++++.+..|+++++|++|++++|.+.... +..+.++++|++|++++|.++.+++..+. .+++|++|++++|.
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTK--LGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCC--CCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccC--chhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence 555555554445555555555555555544321 12344445555555555544444433222 23444444444444
Q ss_pred CCCcc---------------------------------------------------hhhhcccCCCcccEEeCCCCCCCC
Q psy3329 174 LIDLD---------------------------------------------------VATTLGQNLVHLDSLDLSNCHLKG 202 (694)
Q Consensus 174 l~~~~---------------------------------------------------~~~~~~~~~~~L~~L~l~~n~~~~ 202 (694)
+.+.. ...+..-..++|+.|++++|.+.
T Consensus 183 l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~- 261 (680)
T 1ziw_A 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN- 261 (680)
T ss_dssp CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC-
T ss_pred ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcC-
Confidence 33322 11111101123667777766663
Q ss_pred CCChhhhhcCCCCcEEEcCCCCCCccchhh--------------------------------hccCCCCccEEEccCcCC
Q psy3329 203 PLSEDAFVNATKLRTLYLSGNPLSAADLSV--------------------------------ALKPLTKLHRLSLRNCGL 250 (694)
Q Consensus 203 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~--------------------------------~l~~l~~L~~L~l~~n~i 250 (694)
.+++..|..+++|+.|++++|.+....... .+..+++|+.|++++|.+
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l 341 (680)
T 1ziw_A 262 VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI 341 (680)
T ss_dssp EECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCB
T ss_pred ccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCcc
Confidence 333345666677777777766665443221 123345555555555555
Q ss_pred CcCCcccccCCCCccEEeCCCCCCcc--cchhhcCC--CCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccC-c
Q psy3329 251 SRLPANTFHRFTCLQELDISHNPLID--AFTALLSP--LESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLET-L 325 (694)
Q Consensus 251 ~~~~~~~~~~~~~L~~L~L~~n~~~~--~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~ 325 (694)
+++++..|..+++|++|++++|.+.. .....+.. .++|+.|++++|.++++.+..|..+++|+.|++++|.+.+ +
T Consensus 342 ~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 421 (680)
T 1ziw_A 342 PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 421 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEEC
T ss_pred CCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcccc
Confidence 55555555555555555555544221 11111111 1345555556666666767777788888888888888764 4
Q ss_pred CchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhhh--
Q psy3329 326 ESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILF-- 403 (694)
Q Consensus 326 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~-- 403 (694)
++..+.++++|++|++++|+++.+....|. .+++|+.|++++|.+..+. .+|..+ ..+..+..+.
T Consensus 422 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~---~~~~L~~L~l~~n~l~~~~---------~~p~~~-~~l~~L~~L~Ls 488 (680)
T 1ziw_A 422 TGQEWRGLENIFEIYLSYNKYLQLTRNSFA---LVPSLQRLMLRRVALKNVD---------SSPSPF-QPLRNLTILDLS 488 (680)
T ss_dssp CSGGGTTCTTCCEEECCSCSEEECCTTTTT---TCTTCCEEECTTSCCBCTT---------CSSCTT-TTCTTCCEEECC
T ss_pred CcccccCcccccEEecCCCCcceeChhhhh---cCcccccchhccccccccc---------cCCccc-ccCCCCCEEECC
Confidence 456677888888888888888777766666 6777777777777765321 111111 0111111100
Q ss_pred -----hhcccccccCCCCCCCceEEcCCCCCcccCCC--------CCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCC
Q psy3329 404 -----ILNETVFHENYTYPDLEELRLSGNPLHVLPTG--------NLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNIT 470 (694)
Q Consensus 404 -----~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~--------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 470 (694)
.+....|.+ +++|++|++++|.+++++.. .+ .++++|+.|+|++|+++.+++..|.++++|+
T Consensus 489 ~N~l~~i~~~~~~~---l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~--~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~ 563 (680)
T 1ziw_A 489 NNNIANINDDMLEG---LEKLEILDLQHNNLARLWKHANPGGPIYFL--KGLSHLHILNLESNGFDEIPVEVFKDLFELK 563 (680)
T ss_dssp SSCCCCCCTTTTTT---CTTCCEEECCSSCCGGGGSTTSTTSCCCTT--TTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCCcCChhhhcc---ccccCEEeCCCCCccccchhhccCCcchhh--cCCCCCCEEECCCCCCCCCCHHHcccccCcc
Confidence 011122444 88999999999999987433 24 7889999999999999999999999999999
Q ss_pred EEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccChhhhc-CCCcccEEEccCCccccccCc-HHHHHHHHh
Q psy3329 471 SLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLR-HNRAITSIKLVGNPWKCDCNI-ADMWEWATR 545 (694)
Q Consensus 471 ~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~-~~~~l~~l~l~~N~~~c~c~~-~~~~~~~~~ 545 (694)
.|+|++|+++++++..| ..+++|+.|+|++|+++++++..+. .+++|+.+++++|||.|+|+. .||..|...
T Consensus 564 ~L~Ls~N~l~~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~~ 637 (680)
T 1ziw_A 564 IIDLGLNNLNTLPASVF---NNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINE 637 (680)
T ss_dssp EEECCSSCCCCCCTTTT---TTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCSSC
T ss_pred eeECCCCCCCcCCHhHh---CCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHHHHh
Confidence 99999999999998888 8899999999999999999998887 789999999999999999996 999888754
No 3
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.6e-53 Score=474.97 Aligned_cols=475 Identities=24% Similarity=0.342 Sum_probs=374.5
Q ss_pred CCceEEECcCCCCcchh-hhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeC
Q psy3329 17 PGLITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLML 95 (694)
Q Consensus 17 ~~L~~L~Ls~~~l~~i~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L 95 (694)
+++++|+|++|.++.++ ..|..+++|++|++++|.++.+.|.+|.++++|++|++++|.++.+.+..|+++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 68999999999999887 58899999999999999999998889999999999999999999988888999999999999
Q ss_pred CCCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCc----EEeCCC
Q psy3329 96 NRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLR----NLNLAE 171 (694)
Q Consensus 96 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~----~L~l~~ 171 (694)
++|.++++.+..++++++|++|++++|.+... .+|..++++++|++|++++|.++.+++..++.+.+|+ +|++++
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~ 190 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSC-KLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCC-CCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccce-echHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC
Confidence 99999998878899999999999999988742 3567888999999999999999988877666665554 799999
Q ss_pred CCCCCcchhhhcccCCCcccEEeCCCCCCCCCCChhh-------------------------------------------
Q psy3329 172 NELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDA------------------------------------------- 208 (694)
Q Consensus 172 n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~------------------------------------------- 208 (694)
|.++.++...+ ...+|+.|++++|.+.+...+..
T Consensus 191 n~l~~~~~~~~---~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~ 267 (606)
T 3vq2_A 191 NPIDFIQDQAF---QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFR 267 (606)
T ss_dssp CCCCEECTTTT---TTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEE
T ss_pred CCcceeCcccc---cCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhhee
Confidence 98887655444 23378888888876532211122
Q ss_pred -------------hhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCc
Q psy3329 209 -------------FVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLI 275 (694)
Q Consensus 209 -------------~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~ 275 (694)
+..+++|+.|++++|.+...+ .+..+++|+.|++++|.+..++ .+ .+++|+.|++++|...
T Consensus 268 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~---~l~~~~~L~~L~l~~n~l~~lp--~~-~l~~L~~L~l~~n~~~ 341 (606)
T 3vq2_A 268 LTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE---DVPKHFKWQSLSIIRCQLKQFP--TL-DLPFLKSLTLTMNKGS 341 (606)
T ss_dssp ECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC---CCCTTCCCSEEEEESCCCSSCC--CC-CCSSCCEEEEESCSSC
T ss_pred ccccccccccccccccCCCCCEEEecCccchhhh---hccccccCCEEEcccccCcccc--cC-CCCccceeeccCCcCc
Confidence 344566666666666665544 3456667777777777776655 23 6677777777777544
Q ss_pred ccchhhcCCCCCCcEEECcCCCCcccC--hhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCc-c
Q psy3329 276 DAFTALLSPLESLEHLDMGYSNLQRIS--RSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNE-T 352 (694)
Q Consensus 276 ~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~ 352 (694)
+.+ .+..+++|++|++++|.++++. +..+..+++|++|++++|.+..++ ..+..+++|+.|++++|.++++++ .
T Consensus 342 ~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~ 418 (606)
T 3vq2_A 342 ISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFS 418 (606)
T ss_dssp EEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCTTCTTCCEEECTTSEEESTTTTT
T ss_pred cch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch-hhccCCCCCCeeECCCCccCCccChh
Confidence 433 4556777777777777776653 556677777777777777777655 456677777777777777776554 4
Q ss_pred ccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcc-
Q psy3329 353 VFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHV- 431 (694)
Q Consensus 353 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~- 431 (694)
.+. .+++|+.|++++|.+..... .. +.. +++|++|++++|.+++
T Consensus 419 ~~~---~l~~L~~L~l~~n~l~~~~~-----------~~------------------~~~---l~~L~~L~l~~n~l~~~ 463 (606)
T 3vq2_A 419 AFL---SLEKLLYLDISYTNTKIDFD-----------GI------------------FLG---LTSLNTLKMAGNSFKDN 463 (606)
T ss_dssp TTT---TCTTCCEEECTTSCCEECCT-----------TT------------------TTT---CTTCCEEECTTCEEGGG
T ss_pred hhh---ccccCCEEECcCCCCCccch-----------hh------------------hcC---CCCCCEEECCCCcCCCc
Confidence 454 67777777777777654321 11 223 8999999999999998
Q ss_pred cCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccCh
Q psy3329 432 LPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISP 511 (694)
Q Consensus 432 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~ 511 (694)
..+..+ ..+++|+.|+|++|.++++++..|.++++|++|+|++|++++.+|..| ..+++|+.|+|++|+++.+++
T Consensus 464 ~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~~L~l~~N~l~~~p~ 538 (606)
T 3vq2_A 464 TLSNVF--ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHY---NQLYSLSTLDCSFNRIETSKG 538 (606)
T ss_dssp EECSCC--TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGT---TTCTTCCEEECTTSCCCCEES
T ss_pred chHHhh--ccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHc---cCCCcCCEEECCCCcCcccCH
Confidence 567777 899999999999999999999999999999999999999999999888 889999999999999997655
Q ss_pred hhhcCCC-cccEEEccCCccccccCcHHHHHHHHh
Q psy3329 512 TVLRHNR-AITSIKLVGNPWKCDCNIADMWEWATR 545 (694)
Q Consensus 512 ~~~~~~~-~l~~l~l~~N~~~c~c~~~~~~~~~~~ 545 (694)
. +..++ +|+.+++++|||.|+|+..|+..|.+.
T Consensus 539 ~-~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~~ 572 (606)
T 3vq2_A 539 I-LQHFPKSLAFFNLTNNSVACICEHQKFLQWVKE 572 (606)
T ss_dssp C-GGGSCTTCCEEECCSCCCCCSSTTHHHHTTTTT
T ss_pred h-HhhhcccCcEEEccCCCcccCCccHHHHHHHHc
Confidence 5 77776 699999999999999999999999865
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.1e-52 Score=476.31 Aligned_cols=494 Identities=22% Similarity=0.226 Sum_probs=350.4
Q ss_pred ccCCCCCceEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCC
Q psy3329 12 RNLDNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLE 91 (694)
Q Consensus 12 ~~~~~~~L~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~ 91 (694)
.+..+++|++|++++|.++.....+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..+.. .+++|+
T Consensus 195 ~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~ 272 (768)
T 3rgz_A 195 DVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQ 272 (768)
T ss_dssp BCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCC
T ss_pred CcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCC
Confidence 346677777777777777754433777777777777777777666777777777777777777776655542 677777
Q ss_pred EEeCCCCcCCccChhhhcCC-CCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCC-CCCccccCCCCCCcEEeC
Q psy3329 92 YLMLNRCNLTYISPSAFDNL-NHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGIS-NLPDNVFANNTWLRNLNL 169 (694)
Q Consensus 92 ~L~L~~n~l~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~~~~L~~L~l 169 (694)
+|++++|.+++..|..+... ++|++|++++|.+.. .+|..++++++|++|++++|.+. .++...+..+++|++|++
T Consensus 273 ~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~L 350 (768)
T 3rgz_A 273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG--AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 350 (768)
T ss_dssp EEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEE--CCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEEC
T ss_pred EEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCC--ccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeC
Confidence 77777777776666666554 778888888877763 34466777788888888888776 555555777888888888
Q ss_pred CCCCCCCcchhhhcccCCC-cccEEeCCCCCCCCCCChhhhhc--CCCCcEEEcCCCCCCccchhhhccCCCCccEEEcc
Q psy3329 170 AENELIDLDVATTLGQNLV-HLDSLDLSNCHLKGPLSEDAFVN--ATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLR 246 (694)
Q Consensus 170 ~~n~l~~~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~ 246 (694)
++|.+.+.....+ . .++ +|+.|++++|.+.+.++.. +.. +++|+.|++++|.+++..+. .+..+++|+.|+++
T Consensus 351 s~n~l~~~~p~~l-~-~l~~~L~~L~Ls~N~l~~~~~~~-~~~~~~~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls 426 (768)
T 3rgz_A 351 SFNEFSGELPESL-T-NLSASLLTLDLSSNNFSGPILPN-LCQNPKNTLQELYLQNNGFTGKIPP-TLSNCSELVSLHLS 426 (768)
T ss_dssp CSSEEEECCCTTH-H-HHTTTCSEEECCSSEEEEECCTT-TTCSTTCCCCEEECCSSEEEEECCG-GGGGCTTCCEEECC
T ss_pred cCCccCccccHHH-H-hhhcCCcEEEccCCCcCCCcChh-hhhcccCCccEEECCCCccccccCH-HHhcCCCCCEEECc
Confidence 8877653222211 1 344 7888888888776666543 333 67788888888887755443 45778888899998
Q ss_pred CcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcC
Q psy3329 247 NCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLE 326 (694)
Q Consensus 247 ~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 326 (694)
+|.+++..+..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.+++..+..+.++++|+.|+|++|++.+..
T Consensus 427 ~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 506 (768)
T 3rgz_A 427 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 506 (768)
T ss_dssp SSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred CCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcC
Confidence 88888777778888888999999999888888888888888999999999888877788888899999999999888888
Q ss_pred chhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhh-----
Q psy3329 327 SGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVI----- 401 (694)
Q Consensus 327 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~----- 401 (694)
+..+..+++|++|++++|++++..+..+. .+++|+.|++++|++++ .+|..++........
T Consensus 507 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~---~l~~L~~L~Ls~N~l~g-----------~ip~~~~~~~~~~~~~~~~~ 572 (768)
T 3rgz_A 507 PKWIGRLENLAILKLSNNSFSGNIPAELG---DCRSLIWLDLNTNLFNG-----------TIPAAMFKQSGKIAANFIAG 572 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCEEECCGGGG---GCTTCCEEECCSSEEES-----------BCCGGGGTTTTCBCCSTTCS
T ss_pred ChHHhcCCCCCEEECCCCcccCcCCHHHc---CCCCCCEEECCCCccCC-----------cCChHHhcccchhhhhcccc
Confidence 88888888999999999988876555565 78889999999988863 233322211000000
Q ss_pred -----------------------hhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCcc
Q psy3329 402 -----------------------LFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYL 458 (694)
Q Consensus 402 -----------------------~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 458 (694)
........+. .++.+..++++.|.+.+..+..+ ..+++|+.|||++|++++.
T Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~l~~~~~~g~~~~~~--~~l~~L~~LdLs~N~l~g~ 647 (768)
T 3rgz_A 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN---RLSTRNPCNITSRVYGGHTSPTF--DNNGSMMFLDMSYNMLSGY 647 (768)
T ss_dssp CEEEEEECCSCCTTCCSSEEEEECTTCCGGGGG---GGGGTCCSCTTSCEEEEECCCSC--SSSBCCCEEECCSSCCBSC
T ss_pred ccccccccccccccccccccccccccccchhhh---ccccccccccccceecccCchhh--hccccccEEECcCCccccc
Confidence 0000000011 13344455666676777666666 6777777777777777777
Q ss_pred CCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEEEccCCccccccC
Q psy3329 459 PPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCN 535 (694)
Q Consensus 459 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~ 535 (694)
+|..++++++|+.|+|++|+++|.+|..+ +.+++|+.|||++|+++|.+|..+..+++|+.+++++|++.+..|
T Consensus 648 ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l---~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 648 IPKEIGSMPYLFILNLGHNDISGSIPDEV---GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGG---GGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred CCHHHhccccCCEEeCcCCccCCCCChHH---hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCC
Confidence 77777777777777777777777777776 677777777777777777777777777777777777777766443
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-51 Score=475.56 Aligned_cols=507 Identities=24% Similarity=0.335 Sum_probs=333.3
Q ss_pred CCCCceEEECcCCCCcchh-hhhhcCCCCcEEEccCC-cCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCE
Q psy3329 15 DNPGLITINLNANPIQPVE-GAFLVARSLLYLYMQEC-TLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEY 92 (694)
Q Consensus 15 ~~~~L~~L~Ls~~~l~~i~-~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~ 92 (694)
-.+++++|+|++|.++.++ ..|..+++|++|++++| .+..+.|.+|.++++|++|+|++|.+..+.+..|.++++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 4578999999999999775 78899999999999998 455666888999999999999999999988888999999999
Q ss_pred EeCCCCcCCccChhh--hcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCC--CCCcEEe
Q psy3329 93 LMLNRCNLTYISPSA--FDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANN--TWLRNLN 168 (694)
Q Consensus 93 L~L~~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~--~~L~~L~ 168 (694)
|+|++|.+++..+.. +.++++|++|++++|.+.... .+..++++++|++|++++|.++.+.+..+..+ ++|+.|+
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~-~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~ 180 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY-LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCC-CCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCE
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccc-cchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEE
Confidence 999999998854444 889999999999999887542 23468889999999999999988887777766 7889999
Q ss_pred CCCCCCCCcchhhhcccCCC------cccEEeCCCCCCCCCCChhhhhc--CCCCcEEEcCCCC---------CCccchh
Q psy3329 169 LAENELIDLDVATTLGQNLV------HLDSLDLSNCHLKGPLSEDAFVN--ATKLRTLYLSGNP---------LSAADLS 231 (694)
Q Consensus 169 l~~n~l~~~~~~~~~~~~~~------~L~~L~l~~n~~~~~~~~~~~~~--~~~L~~L~L~~n~---------l~~~~~~ 231 (694)
++.|.+.......+. .+. .|+.|++++|.+.+.++...... .+.++.+.++.+. +......
T Consensus 181 L~~n~l~~~~~~~~~--~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~ 258 (844)
T 3j0a_A 181 LAANSLYSRVSVDWG--KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN 258 (844)
T ss_dssp ECCSBSCCCCCCCCC--SSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGT
T ss_pred CCCCccccccccchh--hcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChh
Confidence 998887764322211 222 38899999887755554322111 1233444433111 1111111
Q ss_pred hhccC--CCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCC
Q psy3329 232 VALKP--LTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKM 309 (694)
Q Consensus 232 ~~l~~--l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 309 (694)
.+.. .++|+.|++++|.+..+.+..|..+++|+.|++++|.+.+..+..|..+++|++|+|++|.++.+.+..|.++
T Consensus 259 -~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 337 (844)
T 3j0a_A 259 -TFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGL 337 (844)
T ss_dssp -TTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSC
T ss_pred -hhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCC
Confidence 1111 1345555555555544444444445555555555555544444444555555555555555544444444555
Q ss_pred CCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCccc--------
Q psy3329 310 TSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTK-------- 381 (694)
Q Consensus 310 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~-------- 381 (694)
++|+.|++++|.+..+++..|..+++|+.|++++|.++.++ .+++|+.|++++|+++.++....
T Consensus 338 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~--------~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls 409 (844)
T 3j0a_A 338 PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH--------FIPSIPDIFLSGNKLVTLPKINLTANLIHLS 409 (844)
T ss_dssp TTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS--------SCCSCSEEEEESCCCCCCCCCCTTCCEEECC
T ss_pred CCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc--------CCCCcchhccCCCCcccccccccccceeecc
Confidence 55555555555554444444444555555555555444332 13334444444444433322100
Q ss_pred ccccccccch-hccccchhhhhhhhc--------ccccccCCCCCCCceEEcCCCCCcccC-----CCCCCCcCCCCccE
Q psy3329 382 QYSMRTIPTQ-IWKNFDFLVILFILN--------ETVFHENYTYPDLEELRLSGNPLHVLP-----TGNLLPPQLSRLRS 447 (694)
Q Consensus 382 ~~~~~~ip~~-~~~~~~~l~~~~~~~--------~~~~~~~~~~~~L~~L~Ls~n~l~~~~-----~~~~~~~~l~~L~~ 447 (694)
...+..++.. ....+..+..+.... ...+.. +++|+.|++++|.++..+ +..| ..+++|+.
T Consensus 410 ~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~---~~~L~~L~Ls~N~l~~~~~~~~~~~~~--~~l~~L~~ 484 (844)
T 3j0a_A 410 ENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSE---NPSLEQLFLGENMLQLAWETELCWDVF--EGLSHLQV 484 (844)
T ss_dssp SCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCS---CTTCCBCEEESCCCSSSCCSCCCSSCS--SCBCCEEC
T ss_pred cCccccCchhhhhhcCCccceeeCCCCccccccccccccc---CCccccccCCCCccccccccccchhhh--cCcccccE
Confidence 0000011000 000011111000000 001222 688999999999987443 3445 78899999
Q ss_pred EEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEEEccC
Q psy3329 448 LDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVG 527 (694)
Q Consensus 448 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~ 527 (694)
|+|++|.|+++++..|.++++|+.|+|++|+++++++..+ . ++|+.|+|++|++++.+|..+ .+|+.+++++
T Consensus 485 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~---~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~ 556 (844)
T 3j0a_A 485 LYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL---P--ANLEILDISRNQLLAPNPDVF---VSLSVLDITH 556 (844)
T ss_dssp CCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCC---C--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEE
T ss_pred EECCCCcccccChhHccchhhhheeECCCCCCCccChhhh---h--ccccEEECCCCcCCCCChhHh---CCcCEEEecC
Confidence 9999999999999999999999999999999999988776 3 899999999999999988765 5789999999
Q ss_pred CccccccCcHHHHHHHHhc
Q psy3329 528 NPWKCDCNIADMWEWATRE 546 (694)
Q Consensus 528 N~~~c~c~~~~~~~~~~~~ 546 (694)
|||.|+|++.||..|....
T Consensus 557 Np~~C~c~~~~f~~~~~~~ 575 (844)
T 3j0a_A 557 NKFICECELSTFINWLNHT 575 (844)
T ss_dssp ECCCCSSSCCSHHHHHHHT
T ss_pred CCcccccccHHHHHHHHhc
Confidence 9999999999999998763
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.6e-51 Score=470.44 Aligned_cols=477 Identities=23% Similarity=0.212 Sum_probs=334.0
Q ss_pred cCCCCCceEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChh--hccCCCCCCeEECCCCCCCccCCCCC-CCCCC
Q psy3329 13 NLDNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQ--FFTNLTTLNKLDLSGNPLRIIEPGVF-DPLTS 89 (694)
Q Consensus 13 ~~~~~~L~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~Ls~n~~~~~~~~~~-~~l~~ 89 (694)
+.++++|+.++++.+.+..+|..|..+++|++|+|++|.+.+..|. .++++++|++|++++|.+.+..+..+ .++++
T Consensus 73 l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 152 (768)
T 3rgz_A 73 LLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS 152 (768)
T ss_dssp TTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTT
T ss_pred HhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCC
Confidence 4444455555555444444445566666666777766666654455 56666777777777666654444333 56666
Q ss_pred CCEEeCCCCcCCccChhh---hcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcE
Q psy3329 90 LEYLMLNRCNLTYISPSA---FDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRN 166 (694)
Q Consensus 90 L~~L~L~~n~l~~~~~~~---l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~ 166 (694)
|++|++++|.+++..+.. +.++++|++|++++|.+....+ +.++++|++|++++|.+.+..+. +..+++|++
T Consensus 153 L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~ 227 (768)
T 3rgz_A 153 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD----VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQH 227 (768)
T ss_dssp CSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB----CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCE
T ss_pred CCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC----cccCCcCCEEECcCCcCCCCCcc-cccCCCCCE
Confidence 777777777666665555 5666677777777766654322 35667777777777776665554 666777777
Q ss_pred EeCCCCCCCCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEcc
Q psy3329 167 LNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLR 246 (694)
Q Consensus 167 L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~ 246 (694)
|++++|.+++.....+. .+++|++|++++|.+.+.++.. .+++|++|++++|.+++..+......+++|++|+++
T Consensus 228 L~Ls~n~l~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls 302 (768)
T 3rgz_A 228 LDISGNKLSGDFSRAIS--TCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS 302 (768)
T ss_dssp EECCSSCCCSCHHHHTT--TCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECC
T ss_pred EECcCCcCCCcccHHHh--cCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECc
Confidence 77777766643222222 5667777777777665555532 566777777777766544333222334677777777
Q ss_pred CcCCCcCCcccccCCCCccEEeCCCCCCcccchhh-cCCCCCCcEEECcCCCCcccChhhhcCCC-CCcEEeccCCcccC
Q psy3329 247 NCGLSRLPANTFHRFTCLQELDISHNPLIDAFTAL-LSPLESLEHLDMGYSNLQRISRSTFLKMT-SLKTLILSGNKLET 324 (694)
Q Consensus 247 ~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~ 324 (694)
+|.+++..+..+..+++|++|++++|.+.+.+|.. +..+++|++|++++|.+++..+..+..++ +|+.|++++|.+.+
T Consensus 303 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~ 382 (768)
T 3rgz_A 303 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 382 (768)
T ss_dssp SSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEE
T ss_pred CCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCC
Confidence 77776665566677777777777777776555543 66777777777777777655555666665 67777777777665
Q ss_pred cCchhhcC--CCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhh
Q psy3329 325 LESGLFQN--LTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVIL 402 (694)
Q Consensus 325 ~~~~~l~~--l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~ 402 (694)
..+..+.. +++|+.|++++|.+++..+..+. .+++|+.|++++|++++. +|..
T Consensus 383 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~~-----------~p~~----------- 437 (768)
T 3rgz_A 383 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS---NCSELVSLHLSFNYLSGT-----------IPSS----------- 437 (768)
T ss_dssp ECCTTTTCSTTCCCCEEECCSSEEEEECCGGGG---GCTTCCEEECCSSEEESC-----------CCGG-----------
T ss_pred CcChhhhhcccCCccEEECCCCccccccCHHHh---cCCCCCEEECcCCcccCc-----------ccHH-----------
Confidence 54444444 56777777777777765555555 677777777777776532 2222
Q ss_pred hhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCC
Q psy3329 403 FILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMT 482 (694)
Q Consensus 403 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 482 (694)
+.. +++|+.|++++|.+++..+..+ ..+++|+.|+|++|++++..|..+.++++|++|+|++|++++.
T Consensus 438 -------l~~---l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 505 (768)
T 3rgz_A 438 -------LGS---LSKLRDLKLWLNMLEGEIPQEL--MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505 (768)
T ss_dssp -------GGG---CTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC
T ss_pred -------Hhc---CCCCCEEECCCCcccCcCCHHH--cCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCc
Confidence 223 8899999999999999888888 8999999999999999999899999999999999999999999
Q ss_pred cchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEEEccCCccccccCcHHH
Q psy3329 483 SELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADM 539 (694)
Q Consensus 483 ~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~~~~~ 539 (694)
+|..+ ..+++|++|+|++|++++.+|..+..+++|+.+++++|++.|.++..++
T Consensus 506 ~p~~~---~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~ 559 (768)
T 3rgz_A 506 IPKWI---GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 559 (768)
T ss_dssp CCGGG---GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGG
T ss_pred CChHH---hcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHh
Confidence 99888 8899999999999999999999999999999999999999999887654
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.8e-49 Score=445.71 Aligned_cols=484 Identities=24% Similarity=0.277 Sum_probs=367.7
Q ss_pred eEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCc
Q psy3329 20 ITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCN 99 (694)
Q Consensus 20 ~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~ 99 (694)
+.++++++.++.+|..+. +++++|++++|.++++.+..|.++++|++|++++|.++++.+..|.++++|++|++++|.
T Consensus 7 ~~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp SEEECCSSCCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred CeeECCCCCccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence 579999999999996553 799999999999999999899999999999999999999999989999999999999999
Q ss_pred CCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCCcch
Q psy3329 100 LTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDV 179 (694)
Q Consensus 100 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 179 (694)
++.+++.+|.++++|++|++++|.+..+.. ..++++++|++|++++|.++..++..+..+++|++|++++|.+++...
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 162 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKN--NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS 162 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCCCCS--CTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCH
T ss_pred cCccChhhhccCCCCCEEECCCCccCccCh--hHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCH
Confidence 999988889999999999999999985443 568899999999999999999998889999999999999999988765
Q ss_pred hhhcccCCCcccEEeCCCCCCCCCCChhhhhcC---------------------------CC------------------
Q psy3329 180 ATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNA---------------------------TK------------------ 214 (694)
Q Consensus 180 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~---------------------------~~------------------ 214 (694)
..+....+++|++|++++|.+.+..+ ..+..+ ++
T Consensus 163 ~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~ 241 (680)
T 1ziw_A 163 EELDIFANSSLKKLELSSNQIKEFSP-GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241 (680)
T ss_dssp HHHGGGTTCEESEEECTTCCCCCBCT-TGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTT
T ss_pred HHhhccccccccEEECCCCcccccCh-hhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhH
Confidence 54432256789999999888744332 223221 33
Q ss_pred --------CcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcc-----cch--
Q psy3329 215 --------LRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLID-----AFT-- 279 (694)
Q Consensus 215 --------L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~-----~~~-- 279 (694)
|+.|++++|.++..... .+..+++|+.|++++|.+.++.+..+..+++|+.|++++|...+ .+|
T Consensus 242 ~~~l~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i 320 (680)
T 1ziw_A 242 FLGLKWTNLTMLDLSYNNLNVVGND-SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKI 320 (680)
T ss_dssp TGGGGGSCCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEE
T ss_pred hhccCcCCCCEEECCCCCcCccCcc-cccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccccccccc
Confidence 44444444444433322 23444555555555555544444334444444444443332211 011
Q ss_pred --hhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEecc----------------------------CCcccCcCchh
Q psy3329 280 --ALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILS----------------------------GNKLETLESGL 329 (694)
Q Consensus 280 --~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~----------------------------~n~l~~~~~~~ 329 (694)
..+..+++|++|++++|.++++.+..|.++++|++|+++ +|++.++.+..
T Consensus 321 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~ 400 (680)
T 1ziw_A 321 DDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA 400 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTT
T ss_pred ChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhh
Confidence 145556777777777777777776666666666655554 45566666778
Q ss_pred hcCCCCCCEEeCCCCCCcc-cCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhhhh----
Q psy3329 330 FQNLTHLSVLELNNCGLTR-LNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFI---- 404 (694)
Q Consensus 330 l~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~---- 404 (694)
|..+++|+.|++++|.+++ ++...|. .+++|++|++++|++..++.... ..+..+..+..
T Consensus 401 ~~~l~~L~~L~L~~N~l~~~~~~~~~~---~l~~L~~L~Ls~n~l~~~~~~~~------------~~~~~L~~L~l~~n~ 465 (680)
T 1ziw_A 401 FSWLGHLEVLDLGLNEIGQELTGQEWR---GLENIFEIYLSYNKYLQLTRNSF------------ALVPSLQRLMLRRVA 465 (680)
T ss_dssp TTTCTTCCEEECCSSCCEEECCSGGGT---TCTTCCEEECCSCSEEECCTTTT------------TTCTTCCEEECTTSC
T ss_pred hhCCCCCCEEeCCCCcCccccCccccc---CcccccEEecCCCCcceeChhhh------------hcCcccccchhcccc
Confidence 8899999999999999986 6666776 89999999999999876543211 11111111100
Q ss_pred -----hcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCC--------CCCCCCCCCCE
Q psy3329 405 -----LNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPP--------NVFNNTRNITS 471 (694)
Q Consensus 405 -----~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~ 471 (694)
.....|.. +++|+.|++++|.++++++..| ..+++|+.|+|++|.++++.+ ..|.++++|+.
T Consensus 466 l~~~~~~p~~~~~---l~~L~~L~Ls~N~l~~i~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~ 540 (680)
T 1ziw_A 466 LKNVDSSPSPFQP---LRNLTILDLSNNNIANINDDML--EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI 540 (680)
T ss_dssp CBCTTCSSCTTTT---CTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCE
T ss_pred ccccccCCccccc---CCCCCEEECCCCCCCcCChhhh--ccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCE
Confidence 00112333 8899999999999999999888 899999999999999998643 33788999999
Q ss_pred EEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEEEccCCcccc
Q psy3329 472 LNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKC 532 (694)
Q Consensus 472 L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c 532 (694)
|+|++|+++.+++..| ..+++|+.|+|++|+++++++..|..+++|+.+++++|.+..
T Consensus 541 L~L~~N~l~~i~~~~~---~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ 598 (680)
T 1ziw_A 541 LNLESNGFDEIPVEVF---KDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 598 (680)
T ss_dssp EECCSSCCCCCCTTTT---TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCB
T ss_pred EECCCCCCCCCCHHHc---ccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCc
Confidence 9999999998877778 889999999999999999999989999999999999998875
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8.3e-49 Score=438.48 Aligned_cols=464 Identities=24% Similarity=0.266 Sum_probs=329.6
Q ss_pred ceEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCC
Q psy3329 19 LITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRC 98 (694)
Q Consensus 19 L~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n 98 (694)
-+.+++++..++.+|..+. +++++|++++|.++++.|.+|.++++|++|++++|.+..+.+..|.++++|++|++++|
T Consensus 14 ~~~~~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 91 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91 (606)
T ss_dssp TTEEECTTSCCSSCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CceEECCCCCcccCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC
Confidence 3478999999999997664 47999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCCcc
Q psy3329 99 NLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLD 178 (694)
Q Consensus 99 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 178 (694)
.+++..|.+|+++++|++|++++|.++.+.. ..++++++|++|++++|.+..+....+..+++|++|++++|.+....
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 169 (606)
T 3t6q_A 92 PLIFMAETALSGPKALKHLFFIQTGISSIDF--IPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLS 169 (606)
T ss_dssp CCSEECTTTTSSCTTCCEEECTTSCCSCGGG--SCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEEC
T ss_pred cccccChhhhcccccccEeeccccCcccCCc--chhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccC
Confidence 9999999999999999999999999986543 45889999999999999999987666677999999999999998765
Q ss_pred hhhhcccCCCccc--EEeCCCCCCCCCCChhhhhcCCCCcEEEc------------------------------------
Q psy3329 179 VATTLGQNLVHLD--SLDLSNCHLKGPLSEDAFVNATKLRTLYL------------------------------------ 220 (694)
Q Consensus 179 ~~~~~~~~~~~L~--~L~l~~n~~~~~~~~~~~~~~~~L~~L~L------------------------------------ 220 (694)
...+. .+++|+ .|++++|.+.+..+ ..+. ..+|+.|++
T Consensus 170 ~~~~~--~l~~L~~l~L~l~~n~l~~~~~-~~~~-~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~ 245 (606)
T 3t6q_A 170 KEDMS--SLQQATNLSLNLNGNDIAGIEP-GAFD-SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISP 245 (606)
T ss_dssp HHHHH--TTTTCCSEEEECTTCCCCEECT-TTTT-TCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCG
T ss_pred hhhhh--hhcccceeEEecCCCccCccCh-hHhh-hccccccccCCchhHHHHhhhccccchhheechhhccccccccCh
Confidence 54443 678888 89999999854333 3332 234444444
Q ss_pred ----------------CCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCC
Q psy3329 221 ----------------SGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSP 284 (694)
Q Consensus 221 ----------------~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~ 284 (694)
++|.++..... .+..+++|++|++++|.++.++. .+..+++|++|++++|.+.+..+..+..
T Consensus 246 ~~~~~l~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~lp~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 323 (606)
T 3t6q_A 246 AVFEGLCEMSVESINLQKHYFFNISSN-TFHCFSGLQELDLTATHLSELPS-GLVGLSTLKKLVLSANKFENLCQISASN 323 (606)
T ss_dssp GGGGGGGGSEEEEEECTTCCCSSCCTT-TTTTCTTCSEEECTTSCCSCCCS-SCCSCTTCCEEECTTCCCSBGGGGCGGG
T ss_pred hHhchhhcCceeEEEeecCccCccCHH-HhccccCCCEEeccCCccCCCCh-hhcccccCCEEECccCCcCcCchhhhhc
Confidence 44444433322 23444555555555555554432 3444455555555555555444444445
Q ss_pred CCCCcEEECcCCCCc-ccChhhhcCCCCCcEEeccCCcccCcC--chhhcCCCCCCEEeCCCCCCcccCccccccCCCCC
Q psy3329 285 LESLEHLDMGYSNLQ-RISRSTFLKMTSLKTLILSGNKLETLE--SGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYP 361 (694)
Q Consensus 285 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 361 (694)
+++|++|++++|.+. .+++..+..+++|++|++++|.+.++. +..+..+++|+.|++++|.++.+.+..+. .++
T Consensus 324 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~---~l~ 400 (606)
T 3t6q_A 324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK---ECP 400 (606)
T ss_dssp CTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTT---TCT
T ss_pred cCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhc---CCc
Confidence 555555555555444 233333445555555555555554443 33344455555555555555444444443 445
Q ss_pred CCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcC
Q psy3329 362 DLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQ 441 (694)
Q Consensus 362 ~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~ 441 (694)
+|+.|++++|+++.... . ..+.. +++|+.|++++|.+++.++..+ ..
T Consensus 401 ~L~~L~l~~n~l~~~~~-----------~-----------------~~~~~---l~~L~~L~l~~n~l~~~~~~~~--~~ 447 (606)
T 3t6q_A 401 QLELLDLAFTRLKVKDA-----------Q-----------------SPFQN---LHLLKVLNLSHSLLDISSEQLF--DG 447 (606)
T ss_dssp TCSEEECTTCCEECCTT-----------C-----------------CTTTT---CTTCCEEECTTCCCBTTCTTTT--TT
T ss_pred cCCeEECCCCcCCCccc-----------c-----------------hhhhC---cccCCEEECCCCccCCcCHHHH--hC
Confidence 55555555554432211 0 01222 7888888888888888888777 78
Q ss_pred CCCccEEEccCCcCCcc---CCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCC
Q psy3329 442 LSRLRSLDLSRCKIDYL---PPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNR 518 (694)
Q Consensus 442 l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~ 518 (694)
+++|+.|++++|.+++. .+..+..+++|+.|++++|++++..|..| ..+++|+.|+|++|++++.+|..+..++
T Consensus 448 l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~~~~l~~l~ 524 (606)
T 3t6q_A 448 LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF---TSLKMMNHVDLSHNRLTSSSIEALSHLK 524 (606)
T ss_dssp CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTT---TTCTTCCEEECCSSCCCGGGGGGGTTCC
T ss_pred CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhh---ccccCCCEEECCCCccCcCChhHhCccc
Confidence 88888888888888772 23557788888888888888888888777 7888888888888888888888888888
Q ss_pred cccEEEccCCcccc
Q psy3329 519 AITSIKLVGNPWKC 532 (694)
Q Consensus 519 ~l~~l~l~~N~~~c 532 (694)
.| .+++++|.+..
T Consensus 525 ~L-~L~L~~N~l~~ 537 (606)
T 3t6q_A 525 GI-YLNLASNHISI 537 (606)
T ss_dssp SC-EEECCSSCCCC
T ss_pred cc-EEECcCCcccc
Confidence 88 88888888873
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.4e-49 Score=438.62 Aligned_cols=477 Identities=23% Similarity=0.316 Sum_probs=388.7
Q ss_pred CCceEEECcCCCCcchh-hhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeC
Q psy3329 17 PGLITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLML 95 (694)
Q Consensus 17 ~~L~~L~Ls~~~l~~i~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L 95 (694)
+++++|++++|.++.++ ..|..+++|++|++++|.++.+.+.+|.++++|++|++++|.++.+++..|.++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 57889999999998876 67888999999999999888888888899999999999999998888888899999999999
Q ss_pred CCCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCC----cEEeCCC
Q psy3329 96 NRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWL----RNLNLAE 171 (694)
Q Consensus 96 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L----~~L~l~~ 171 (694)
++|.++.+.+..++++++|++|++++|.+..+ .+|..++++++|++|++++|.++.+++..++.+++| +.|++++
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~-~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~ 186 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSF-KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCC-CCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred cccccccCCCccccccccccEEecCCCcccee-cChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCC
Confidence 99998888776788899999999999988742 345678888999999999999888887777777777 7889999
Q ss_pred CCCCCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcE--------------------------------EE
Q psy3329 172 NELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRT--------------------------------LY 219 (694)
Q Consensus 172 n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~--------------------------------L~ 219 (694)
|.+..+....+. ..+|+.|++++|..........+..+++++. ++
T Consensus 187 n~l~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~ 263 (570)
T 2z63_A 187 NPMNFIQPGAFK---EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263 (570)
T ss_dssp CCCCEECTTTTT---TCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEE
T ss_pred CCceecCHHHhc---cCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhh
Confidence 988876554442 3378888888774322222223334444433 33
Q ss_pred cCCC-CCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCC
Q psy3329 220 LSGN-PLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNL 298 (694)
Q Consensus 220 L~~n-~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l 298 (694)
+.++ .+... ....+..+++|+.|++++|.++.++ ..+..+ +|+.|++++|.+... |. ..+++|++|++++|.+
T Consensus 264 l~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~l~~l~-~~~~~~-~L~~L~l~~n~~~~l-~~--~~l~~L~~L~l~~n~~ 337 (570)
T 2z63_A 264 LAYLDYYLDD-IIDLFNCLTNVSSFSLVSVTIERVK-DFSYNF-GWQHLELVNCKFGQF-PT--LKLKSLKRLTFTSNKG 337 (570)
T ss_dssp EEETTEEESC-STTTTGGGTTCSEEEEESCEECSCC-BCCSCC-CCSEEEEESCBCSSC-CB--CBCSSCCEEEEESCBS
T ss_pred hhcchhhhhh-chhhhcCcCcccEEEecCccchhhh-hhhccC-CccEEeeccCccccc-Cc--ccccccCEEeCcCCcc
Confidence 3332 11111 1223567789999999999998877 456666 999999999998743 32 4678999999999988
Q ss_pred cccChhhhcCCCCCcEEeccCCcccCcC--chhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCC
Q psy3329 299 QRISRSTFLKMTSLKTLILSGNKLETLE--SGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVL 376 (694)
Q Consensus 299 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 376 (694)
....+. ..+++|+.|++++|.++... +..+..+++|+.|++++|.++.++.. +. .+++|+.|++++|.+...
T Consensus 338 ~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~---~l~~L~~L~l~~n~l~~~ 411 (570)
T 2z63_A 338 GNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FL---GLEQLEHLDFQHSNLKQM 411 (570)
T ss_dssp CCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EE---TCTTCCEEECTTSEEESC
T ss_pred cccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-cc---ccCCCCEEEccCCccccc
Confidence 766543 68899999999999998775 66788999999999999999988776 55 789999999999988754
Q ss_pred CCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCC
Q psy3329 377 PDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKID 456 (694)
Q Consensus 377 ~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 456 (694)
+.. .. +.. +++|+.|++++|.+.+..+..+ ..+++|+.|+|++|.++
T Consensus 412 ~~~-----------~~-----------------~~~---l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~ 458 (570)
T 2z63_A 412 SEF-----------SV-----------------FLS---LRNLIYLDISHTHTRVAFNGIF--NGLSSLEVLKMAGNSFQ 458 (570)
T ss_dssp TTS-----------CT-----------------TTT---CTTCCEEECTTSCCEECCTTTT--TTCTTCCEEECTTCEEG
T ss_pred cch-----------hh-----------------hhc---CCCCCEEeCcCCcccccchhhh--hcCCcCcEEECcCCcCc
Confidence 320 00 223 8999999999999999998888 89999999999999998
Q ss_pred -ccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEEEccCCccccccC
Q psy3329 457 -YLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCN 535 (694)
Q Consensus 457 -~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~ 535 (694)
+..|..+..+++|+.|++++|++++..|..| ..+++|++|++++|++++.++..+..+++|+.+++++|++.|+|+
T Consensus 459 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF---NSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTT---TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cccchhhhhcccCCCEEECCCCccccCChhhh---hcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 4566789999999999999999999988888 889999999999999999999999999999999999999999999
Q ss_pred cHHHH-HHHHh
Q psy3329 536 IADMW-EWATR 545 (694)
Q Consensus 536 ~~~~~-~~~~~ 545 (694)
..|+. .|+..
T Consensus 536 ~~~~~~~wl~~ 546 (570)
T 2z63_A 536 RIDYLSRWLNK 546 (570)
T ss_dssp TTHHHHHHHHH
T ss_pred chHHHHHHHHh
Confidence 98887 99876
No 10
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=6e-49 Score=434.37 Aligned_cols=475 Identities=21% Similarity=0.311 Sum_probs=348.7
Q ss_pred CCceEEECcCCCCcchh-hhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeC
Q psy3329 17 PGLITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLML 95 (694)
Q Consensus 17 ~~L~~L~Ls~~~l~~i~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L 95 (694)
++|++|++++|.++.++ ..|..+++|++|++++|.++++.+.+|..+++|++|++++|.++++++..|+++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 46777777777777664 56777777777777777777776677777777777777777777766666777777777777
Q ss_pred CCCcCCcc-ChhhhcCCCCCCEEECCCCc-CCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCC
Q psy3329 96 NRCNLTYI-SPSAFDNLNHLKTLELSQNK-LKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENE 173 (694)
Q Consensus 96 ~~n~l~~~-~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~ 173 (694)
++|.++++ .+..++++++|++|++++|. +..+. +..+.++++|++|++++|.+++..+..+..+++|++|+++.|.
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR--RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC--TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccC--HhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence 77777653 24566777777777777776 33211 1356667777777777777776666667777777777777776
Q ss_pred CCCcchhhhcccCCCcccEEeCCCCCCCCCC--ChhhhhcCCCCcEEEcCCCCCCccchh---hhccCCCCccEEEccCc
Q psy3329 174 LIDLDVATTLGQNLVHLDSLDLSNCHLKGPL--SEDAFVNATKLRTLYLSGNPLSAADLS---VALKPLTKLHRLSLRNC 248 (694)
Q Consensus 174 l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~---~~l~~l~~L~~L~l~~n 248 (694)
+...+... ...+++|++|++++|.+.+.. +......+++|+.|++++|.+++.... ..+..+++|+.+++++|
T Consensus 184 ~~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~ 261 (549)
T 2z81_A 184 SAFLLEIF--ADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC 261 (549)
T ss_dssp STTHHHHH--HHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESC
T ss_pred ccccchhh--HhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccc
Confidence 65433222 124677777777777764321 111233466777777777766544322 12355677888888888
Q ss_pred CCCcCC------cccccCCCCccEEeCCCCCCcccc-----hhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEec
Q psy3329 249 GLSRLP------ANTFHRFTCLQELDISHNPLIDAF-----TALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLIL 317 (694)
Q Consensus 249 ~i~~~~------~~~~~~~~~L~~L~L~~n~~~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 317 (694)
.+.++. ...+..+++|+.|.+.++.+.... +..+...++|+.|++++|.+..++...+.++++|+.|++
T Consensus 262 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~L 341 (549)
T 2z81_A 262 TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDL 341 (549)
T ss_dssp EEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEEC
T ss_pred cccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEc
Confidence 665432 123456778888888888765432 112233568999999999999888777778999999999
Q ss_pred cCCcccCcCch---hhcCCCCCCEEeCCCCCCcccCc--cccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchh
Q psy3329 318 SGNKLETLESG---LFQNLTHLSVLELNNCGLTRLNE--TVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQI 392 (694)
Q Consensus 318 ~~n~l~~~~~~---~l~~l~~L~~L~L~~n~l~~~~~--~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~ 392 (694)
++|.+.+..+. .+..+++|+.|++++|+++.++. ..+. .+++|++|++++|+++.+|..
T Consensus 342 s~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~---~l~~L~~L~Ls~N~l~~lp~~------------- 405 (549)
T 2z81_A 342 SENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL---TLKNLTSLDISRNTFHPMPDS------------- 405 (549)
T ss_dssp CSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGG---GCTTCCEEECTTCCCCCCCSC-------------
T ss_pred cCCccccccccchhhhhccccCcEEEccCCcccccccchhhhh---cCCCCCEEECCCCCCccCChh-------------
Confidence 99999875432 36788999999999999998764 4455 789999999999999865531
Q ss_pred ccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEE
Q psy3329 393 WKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSL 472 (694)
Q Consensus 393 ~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 472 (694)
+.. +++|+.|++++|.++.++... .++|+.|+|++|+|++++ ..+++|++|
T Consensus 406 -----------------~~~---~~~L~~L~Ls~N~l~~l~~~~-----~~~L~~L~Ls~N~l~~~~----~~l~~L~~L 456 (549)
T 2z81_A 406 -----------------CQW---PEKMRFLNLSSTGIRVVKTCI-----PQTLEVLDVSNNNLDSFS----LFLPRLQEL 456 (549)
T ss_dssp -----------------CCC---CTTCCEEECTTSCCSCCCTTS-----CTTCSEEECCSSCCSCCC----CCCTTCCEE
T ss_pred -----------------hcc---cccccEEECCCCCcccccchh-----cCCceEEECCCCChhhhc----ccCChhcEE
Confidence 112 789999999999998776532 368999999999999874 578999999
Q ss_pred EccCCccCCCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEEEccCCccccccC-cHHHHHHHHh
Q psy3329 473 NLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCN-IADMWEWATR 545 (694)
Q Consensus 473 ~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~-~~~~~~~~~~ 545 (694)
+|++|+++.+++ . ..+++|+.|+|++|++++.+|..+..+++|+.+++++|+|.|+|+ ..|+..|...
T Consensus 457 ~Ls~N~l~~ip~--~---~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~l~~~l~~ 525 (549)
T 2z81_A 457 YISRNKLKTLPD--A---SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 525 (549)
T ss_dssp ECCSSCCSSCCC--G---GGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHHHHHHHHHHH
T ss_pred ECCCCccCcCCC--c---ccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccHHHHHHHHHh
Confidence 999999996543 2 568999999999999999999999999999999999999999999 5788889876
No 11
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=7.1e-48 Score=434.15 Aligned_cols=476 Identities=24% Similarity=0.364 Sum_probs=320.9
Q ss_pred CceEEECcCCCCcchh-hhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCC
Q psy3329 18 GLITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLN 96 (694)
Q Consensus 18 ~L~~L~Ls~~~l~~i~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~ 96 (694)
++++|+|++|.|+.++ .+|.++++|++|+|++|.++.+.+++|.++++|++|+|++|+++.+++..|.++++|++|+|+
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 6777777777777776 567777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCC----CcEEeCCCC
Q psy3329 97 RCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTW----LRNLNLAEN 172 (694)
Q Consensus 97 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~----L~~L~l~~n 172 (694)
+|.++++++..|+++++|++|++++|.+..+ ..+..++.+++|++|++++|.++.+.+..+..+.+ ...++++.|
T Consensus 133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 133 ETNLASLENFPIGHLKTLKELNVAHNLIQSF-KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCC-CCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCcCCCCChhhhhcCcccCeeccccCccccC-CCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 7777777666777777777777777777642 23456677777777777777777776665544333 335667777
Q ss_pred CCCCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEc--------------------------------
Q psy3329 173 ELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYL-------------------------------- 220 (694)
Q Consensus 173 ~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L-------------------------------- 220 (694)
.+..++...+ ....++.+++.+|.....+....+..++.++...+
T Consensus 212 ~l~~i~~~~~---~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~ 288 (635)
T 4g8a_A 212 PMNFIQPGAF---KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 288 (635)
T ss_dssp CCCEECTTTT---TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEE
T ss_pred cccccCcccc---cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhh
Confidence 6655443322 22334445554443322222223333333333322
Q ss_pred -------------------------CCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCc
Q psy3329 221 -------------------------SGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLI 275 (694)
Q Consensus 221 -------------------------~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~ 275 (694)
.++.+.... .+.....++.|++.+|.+..++.. .++.|+.+.+..|...
T Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~ 362 (635)
T 4g8a_A 289 AYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK---DFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGG 362 (635)
T ss_dssp ECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG---GGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSC
T ss_pred hhhcccccchhhhhhhhccccccccccccccccc---ccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCC
Confidence 222111111 112233444444444444443321 2334445555554443
Q ss_pred ccchhhcCCCCCCcEEECcCCCCcc--cChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCccc-Ccc
Q psy3329 276 DAFTALLSPLESLEHLDMGYSNLQR--ISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRL-NET 352 (694)
Q Consensus 276 ~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~ 352 (694)
... ....+++|+.|+++.|.+.. ..+..+..+.+|+.+++..+.+...... +..+++|+.+++..+..... +..
T Consensus 363 ~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~-~~~l~~L~~l~l~~~~~~~~~~~~ 439 (635)
T 4g8a_A 363 NAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFS 439 (635)
T ss_dssp CBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSC-CTTCTTCCEEECTTSEEESTTSSC
T ss_pred CCc--ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccccccc-ccccccccchhhhhcccccccccc
Confidence 322 12345666677776666543 2334445566677777766665554432 55667777777776655443 233
Q ss_pred ccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCC-cc
Q psy3329 353 VFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPL-HV 431 (694)
Q Consensus 353 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l-~~ 431 (694)
.|. .+++++.++++.|.+..... ..+.+ ++.++.|++++|.+ .+
T Consensus 440 ~~~---~l~~l~~l~ls~n~l~~~~~-----------------------------~~~~~---~~~L~~L~Ls~N~~~~~ 484 (635)
T 4g8a_A 440 VFL---SLRNLIYLDISHTHTRVAFN-----------------------------GIFNG---LSSLEVLKMAGNSFQEN 484 (635)
T ss_dssp TTT---TCTTCCEEECTTSCCEECCT-----------------------------TTTTT---CTTCCEEECTTCEEGGG
T ss_pred ccc---cccccccccccccccccccc-----------------------------ccccc---chhhhhhhhhhcccccc
Confidence 344 56677777777776654322 11233 78999999999974 45
Q ss_pred cCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccCh
Q psy3329 432 LPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISP 511 (694)
Q Consensus 432 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~ 511 (694)
+.+..| ..+++|++|+|++|+|+++++..|.++++|++|+|++|+|+++++..| ..+++|++|||++|+|++++|
T Consensus 485 ~~~~~~--~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~---~~l~~L~~L~Ls~N~l~~~~~ 559 (635)
T 4g8a_A 485 FLPDIF--TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY---KCLNSLQVLDYSLNHIMTSKK 559 (635)
T ss_dssp EECSCC--TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGG---TTCTTCCEEECTTSCCCBCCS
T ss_pred cCchhh--hhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHH---hCCCCCCEEECCCCcCCCCCH
Confidence 677788 899999999999999999999999999999999999999999999888 889999999999999999999
Q ss_pred hhhcCC-CcccEEEccCCccccccCcHHHHHHHHhc
Q psy3329 512 TVLRHN-RAITSIKLVGNPWKCDCNIADMWEWATRE 546 (694)
Q Consensus 512 ~~~~~~-~~l~~l~l~~N~~~c~c~~~~~~~~~~~~ 546 (694)
..+..+ ++|+.|++++|||.|||++.||..|++..
T Consensus 560 ~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~ 595 (635)
T 4g8a_A 560 QELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQ 595 (635)
T ss_dssp SCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHT
T ss_pred HHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhC
Confidence 999887 68999999999999999999999999874
No 12
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.3e-47 Score=428.82 Aligned_cols=459 Identities=24% Similarity=0.249 Sum_probs=382.0
Q ss_pred ceEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCC
Q psy3329 19 LITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRC 98 (694)
Q Consensus 19 L~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n 98 (694)
.++++++++.++.+|..+. +++++|++++|.++++.+..|.++++|++|++++|.++.+.+..|.++++|++|++++|
T Consensus 13 ~~~~~c~~~~l~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp TTEEECTTSCCSSCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CCceEccCCCcccCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence 4689999999999996553 89999999999999999989999999999999999999999999999999999999999
Q ss_pred cCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCC-ccccCCCCCCcEEeCCCCCCCCc
Q psy3329 99 NLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLP-DNVFANNTWLRNLNLAENELIDL 177 (694)
Q Consensus 99 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~~~~L~~L~l~~n~l~~~ 177 (694)
.++++.|.+|+++++|++|++++|.+..+.. ..++++++|++|++++|.+..+. +..++++++|++|++++|.+++.
T Consensus 91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 91 PIQSFSPGSFSGLTSLENLVAVETKLASLES--FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp CCCCCCTTSSTTCTTCCEEECTTSCCCCSSS--SCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred cccccChhhcCCcccCCEEEccCCccccccc--cccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence 9999999999999999999999999986553 45899999999999999998744 67899999999999999999876
Q ss_pred chhhhcccCCCc----ccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhh--------------------
Q psy3329 178 DVATTLGQNLVH----LDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVA-------------------- 233 (694)
Q Consensus 178 ~~~~~~~~~~~~----L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-------------------- 233 (694)
....+. .+.+ +.++++++|.+ ..++...+... +|+.|++++|.+........
T Consensus 169 ~~~~~~--~l~~L~~~l~~L~l~~n~l-~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~ 244 (606)
T 3vq2_A 169 TVNDLQ--FLRENPQVNLSLDMSLNPI-DFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE 244 (606)
T ss_dssp CTTTTH--HHHHCTTCCCEEECTTCCC-CEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTS
T ss_pred Chhhhh--hhhccccccceeeccCCCc-ceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccC
Confidence 543332 3444 44899999999 55665556554 89999999987652111111
Q ss_pred ------------------------------------ccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCccc
Q psy3329 234 ------------------------------------LKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDA 277 (694)
Q Consensus 234 ------------------------------------l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~ 277 (694)
+..+++|+.|++++|.+..++ .+..+++|+.|++++|.+ +.
T Consensus 245 ~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~--~l~~~~~L~~L~l~~n~l-~~ 321 (606)
T 3vq2_A 245 RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE--DVPKHFKWQSLSIIRCQL-KQ 321 (606)
T ss_dssp CCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC--CCCTTCCCSEEEEESCCC-SS
T ss_pred CcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhh--hccccccCCEEEcccccC-cc
Confidence 345577888888888887776 577788888888888888 55
Q ss_pred chhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcC--chhhcCCCCCCEEeCCCCCCcccCccccc
Q psy3329 278 FTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLE--SGLFQNLTHLSVLELNNCGLTRLNETVFH 355 (694)
Q Consensus 278 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 355 (694)
+| .+ .+++|++|++++|...... .+..+++|+.|++++|.++++. +..+..+++|+.|++++|.++.++ ..+.
T Consensus 322 lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~ 396 (606)
T 3vq2_A 322 FP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFM 396 (606)
T ss_dssp CC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCT
T ss_pred cc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch-hhcc
Confidence 55 34 7888888888888543322 5668888888888888888764 566788888899999888888876 3344
Q ss_pred cCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCC
Q psy3329 356 ENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTG 435 (694)
Q Consensus 356 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 435 (694)
.+++|+.|++++|++...+.. . .+.. +++|+.|++++|.+++..+.
T Consensus 397 ---~l~~L~~L~l~~n~l~~~~~~-----------~-----------------~~~~---l~~L~~L~l~~n~l~~~~~~ 442 (606)
T 3vq2_A 397 ---GLEELQHLDFQHSTLKRVTEF-----------S-----------------AFLS---LEKLLYLDISYTNTKIDFDG 442 (606)
T ss_dssp ---TCTTCCEEECTTSEEESTTTT-----------T-----------------TTTT---CTTCCEEECTTSCCEECCTT
T ss_pred ---CCCCCCeeECCCCccCCccCh-----------h-----------------hhhc---cccCCEEECcCCCCCccchh
Confidence 678888999988887654320 0 0223 89999999999999999888
Q ss_pred CCCCcCCCCccEEEccCCcCCc-cCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccChhhh
Q psy3329 436 NLLPPQLSRLRSLDLSRCKIDY-LPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVL 514 (694)
Q Consensus 436 ~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~ 514 (694)
.+ ..+++|+.|++++|.+++ +++..|..+++|++|+|++|++++..|..| ..+++|++|++++|++++.+|..+
T Consensus 443 ~~--~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~~~~~ 517 (606)
T 3vq2_A 443 IF--LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF---DTLHRLQLLNMSHNNLLFLDSSHY 517 (606)
T ss_dssp TT--TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT---TTCTTCCEEECCSSCCSCEEGGGT
T ss_pred hh--cCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhh---cccccCCEEECCCCcCCCcCHHHc
Confidence 88 899999999999999998 578889999999999999999999998888 889999999999999999999999
Q ss_pred cCCCcccEEEccCCcccc
Q psy3329 515 RHNRAITSIKLVGNPWKC 532 (694)
Q Consensus 515 ~~~~~l~~l~l~~N~~~c 532 (694)
..+++|+.|++++|++..
T Consensus 518 ~~l~~L~~L~l~~N~l~~ 535 (606)
T 3vq2_A 518 NQLYSLSTLDCSFNRIET 535 (606)
T ss_dssp TTCTTCCEEECTTSCCCC
T ss_pred cCCCcCCEEECCCCcCcc
Confidence 999999999999999873
No 13
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4e-48 Score=424.46 Aligned_cols=470 Identities=19% Similarity=0.205 Sum_probs=385.2
Q ss_pred eEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCc
Q psy3329 20 ITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCN 99 (694)
Q Consensus 20 ~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~ 99 (694)
+++++++|.++.+|..+. ++|++|++++|.++++.+..|.++++|++|++++|+++++.+..|.++++|++|++++|.
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred ceEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 579999999999996554 899999999999999988999999999999999999999988889999999999999999
Q ss_pred CCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCC--cEEeCCCCCC--C
Q psy3329 100 LTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWL--RNLNLAENEL--I 175 (694)
Q Consensus 100 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L--~~L~l~~n~l--~ 175 (694)
++.+++. .+++|++|++++|.++.+ .+|..++++++|++|++++|.+.. ..+..+++| ++|++++|.+ .
T Consensus 81 l~~lp~~---~l~~L~~L~L~~N~l~~~-~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 81 LVKISCH---PTVNLKHLDLSFNAFDAL-PICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCEEECC---CCCCCSEEECCSSCCSSC-CCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred eeecCcc---ccCCccEEeccCCccccc-cchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 9987433 899999999999998853 345678999999999999999876 346777777 9999999988 4
Q ss_pred CcchhhhcccCCC-cccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCC-------CCccchhhhccCCCCccEEEccC
Q psy3329 176 DLDVATTLGQNLV-HLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNP-------LSAADLSVALKPLTKLHRLSLRN 247 (694)
Q Consensus 176 ~~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~-------l~~~~~~~~l~~l~~L~~L~l~~ 247 (694)
......+. .+. ....+++++|.+.+.++...+..+++|+.+++++|. +.+... .+..+++|+.|++++
T Consensus 154 ~~~~~~l~--~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~--~l~~l~~L~~L~l~~ 229 (520)
T 2z7x_B 154 KEDPEGLQ--DFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA--KLQTNPKLSNLTLNN 229 (520)
T ss_dssp SCCTTTTT--TCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH--GGGGCTTCCEEEEEE
T ss_pred cccccccc--ccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh--hhccccchhhccccc
Confidence 33222111 111 344678899988888887788899999999999986 333222 467889999999999
Q ss_pred cCCCcCCcccc---cCCCCccEEeCCCCCCcccchhhc-----CCCCCCcEEECcCCCCcccChhhhcCC---CCCcEEe
Q psy3329 248 CGLSRLPANTF---HRFTCLQELDISHNPLIDAFTALL-----SPLESLEHLDMGYSNLQRISRSTFLKM---TSLKTLI 316 (694)
Q Consensus 248 n~i~~~~~~~~---~~~~~L~~L~L~~n~~~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~ 316 (694)
|.+++.....+ ...++|+.|++++|.+.+.+|..+ ..+++|+.+++++|.+ .++...+..+ .+|+.|+
T Consensus 230 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~ 308 (520)
T 2z7x_B 230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFT 308 (520)
T ss_dssp EEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEE
T ss_pred cccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEE
Confidence 87764221111 124689999999999998888877 8899999999999998 6664455444 6899999
Q ss_pred ccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhcccc
Q psy3329 317 LSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNF 396 (694)
Q Consensus 317 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~ 396 (694)
+++|.+..... +..+++|++|++++|.+++..+..+. .+++|++|++++|+++.++ .+|..
T Consensus 309 l~~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~L~~N~l~~l~---------~~~~~----- 369 (520)
T 2z7x_B 309 VSGTRMVHMLC--PSKISPFLHLDFSNNLLTDTVFENCG---HLTELETLILQMNQLKELS---------KIAEM----- 369 (520)
T ss_dssp EESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCC---CCSSCCEEECCSSCCCBHH---------HHHHH-----
T ss_pred cCCCccccccc--hhhCCcccEEEeECCccChhhhhhhc---cCCCCCEEEccCCccCccc---------cchHH-----
Confidence 99999877652 26789999999999999996666665 7899999999999987432 22222
Q ss_pred chhhhhhhhcccccccCCCCCCCceEEcCCCCCcc-cCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEcc
Q psy3329 397 DFLVILFILNETVFHENYTYPDLEELRLSGNPLHV-LPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLA 475 (694)
Q Consensus 397 ~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 475 (694)
+.. +++|+.|++++|.+++ ++...+ ..+++|+.|++++|.+++..+..+. ++|+.|+++
T Consensus 370 -------------~~~---l~~L~~L~Ls~N~l~~~l~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls 429 (520)
T 2z7x_B 370 -------------TTQ---MKSLQQLDISQNSVSYDEKKGDC--SWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLH 429 (520)
T ss_dssp -------------HTT---CTTCCEEECCSSCCBCCGGGCSC--CCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECC
T ss_pred -------------Hhh---CCCCCEEECCCCcCCcccccchh--ccCccCCEEECcCCCCCcchhhhhc--ccCCEEECC
Confidence 223 8999999999999998 776667 7899999999999999886665553 799999999
Q ss_pred CCccCCCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEEEccCCccccccCcHHH-HHHHHhc
Q psy3329 476 NNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADM-WEWATRE 546 (694)
Q Consensus 476 ~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~~~~~-~~~~~~~ 546 (694)
+|+++.+ |..+ ..+++|++|++++|+++++++..+..+++|+.+++++|++.|+|+..|+ ..|....
T Consensus 430 ~N~l~~i-p~~~---~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~ 497 (520)
T 2z7x_B 430 SNKIKSI-PKQV---VKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKN 497 (520)
T ss_dssp SSCCCCC-CGGG---GGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHT
T ss_pred CCccccc-chhh---hcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCchHHHHHHHHhc
Confidence 9999954 4444 6899999999999999987777788999999999999999999999999 9998763
No 14
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5.1e-47 Score=437.78 Aligned_cols=494 Identities=21% Similarity=0.257 Sum_probs=396.8
Q ss_pred eEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCC-CCccCCCCCCCCCCCCEEeCCCC
Q psy3329 20 ITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP-LRIIEPGVFDPLTSLEYLMLNRC 98 (694)
Q Consensus 20 ~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-~~~~~~~~~~~l~~L~~L~L~~n 98 (694)
+..++++++++.+|. ..+++++|+|++|.++.+.+..|.++++|++|+|++|. +..+.+..|.++++|++|+|++|
T Consensus 7 ~~~dcs~~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEEESCCCSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred eEEEccCCCCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 578899999999997 56899999999999999999999999999999999995 45677888999999999999999
Q ss_pred cCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCc-cccCCCCCCcEEeCCCCCCCCc
Q psy3329 99 NLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPD-NVFANNTWLRNLNLAENELIDL 177 (694)
Q Consensus 99 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~~~~L~~L~l~~n~l~~~ 177 (694)
.+.++.|.+|.++++|++|++++|.+.....-...+.++++|++|++++|.+..+.+ ..|+++++|++|++++|.+...
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence 999999999999999999999999998522212348899999999999999998765 5789999999999999998876
Q ss_pred chhhhcccCC--CcccEEeCCCCCCCCCCChhhhhcCCC------CcEEEcCCCCCCccchhhhc--cCCCCccEEEccC
Q psy3329 178 DVATTLGQNL--VHLDSLDLSNCHLKGPLSEDAFVNATK------LRTLYLSGNPLSAADLSVAL--KPLTKLHRLSLRN 247 (694)
Q Consensus 178 ~~~~~~~~~~--~~L~~L~l~~n~~~~~~~~~~~~~~~~------L~~L~L~~n~l~~~~~~~~l--~~l~~L~~L~l~~ 247 (694)
....+. .+ ++|+.|++++|.+.+..+. .+..+++ |+.|++++|.++........ ...+.++.+.++.
T Consensus 164 ~~~~l~--~l~~~~L~~L~L~~n~l~~~~~~-~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~ 240 (844)
T 3j0a_A 164 CEHELE--PLQGKTLSFFSLAANSLYSRVSV-DWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240 (844)
T ss_dssp CSGGGH--HHHHCSSCCCEECCSBSCCCCCC-CCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCS
T ss_pred CHHHcc--cccCCccceEECCCCcccccccc-chhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccc
Confidence 444332 23 7899999999999766653 2444444 99999999987765443322 2236788888773
Q ss_pred c---------CCCcCCcccccCC--CCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEe
Q psy3329 248 C---------GLSRLPANTFHRF--TCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLI 316 (694)
Q Consensus 248 n---------~i~~~~~~~~~~~--~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 316 (694)
+ .+.......|..+ ++|+.|++++|.+.+..+..+..+++|+.|+|++|.++.+.+..|.++++|+.|+
T Consensus 241 ~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 320 (844)
T 3j0a_A 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLN 320 (844)
T ss_dssp SCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEE
T ss_pred ccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEE
Confidence 3 3344444455554 7899999999999999899999999999999999999999999999999999999
Q ss_pred ccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcc-------ccccccccc
Q psy3329 317 LSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDST-------KQYSMRTIP 389 (694)
Q Consensus 317 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~-------~~~~~~~ip 389 (694)
|++|.++++.+..|..+++|+.|++++|.++.+++..|. .+++|+.|++++|.++.++... ....+..+|
T Consensus 321 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~---~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~ 397 (844)
T 3j0a_A 321 LSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFK---FLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLP 397 (844)
T ss_dssp EESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSC---SCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCC
T ss_pred CCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhc---CCCCCCEEECCCCCCCcccCCCCcchhccCCCCccccc
Confidence 999999999888899999999999999999999888887 8999999999999998765411 111222333
Q ss_pred chhccccchhhhhhhhccccccc------CCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCc-----c
Q psy3329 390 TQIWKNFDFLVILFILNETVFHE------NYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDY-----L 458 (694)
Q Consensus 390 ~~~~~~~~~l~~~~~~~~~~~~~------~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-----~ 458 (694)
.... . +..+. +..+.+.+ ...+++|+.|++++|.+++.++.... ..+++|+.|+|++|.++. .
T Consensus 398 ~~~~-~---l~~L~-ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~~~~~L~~L~Ls~N~l~~~~~~~~ 471 (844)
T 3j0a_A 398 KINL-T---ANLIH-LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP-SENPSLEQLFLGENMLQLAWETEL 471 (844)
T ss_dssp CCCT-T---CCEEE-CCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSS-CSCTTCCBCEEESCCCSSSCCSCC
T ss_pred cccc-c---cceee-cccCccccCchhhhhhcCCccceeeCCCCccccccccccc-ccCCccccccCCCCcccccccccc
Confidence 2210 0 00000 00000100 01378999999999999887654322 568899999999999874 4
Q ss_pred CCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEEEccCCccccc
Q psy3329 459 PPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCD 533 (694)
Q Consensus 459 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~ 533 (694)
.+..|.++++|+.|+|++|++++.++..| ..+++|+.|+|++|+++++++..+. ++|+.|++++|.+...
T Consensus 472 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~ 541 (844)
T 3j0a_A 472 CWDVFEGLSHLQVLYLNHNYLNSLPPGVF---SHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAP 541 (844)
T ss_dssp CSSCSSCBCCEECCCCCHHHHTTCCTTSS---SSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCC
T ss_pred chhhhcCcccccEEECCCCcccccChhHc---cchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCC
Confidence 45678889999999999999999998888 8899999999999999998887665 7899999999998763
No 15
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.8e-45 Score=404.03 Aligned_cols=477 Identities=19% Similarity=0.175 Sum_probs=378.1
Q ss_pred CCCCceEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEe
Q psy3329 15 DNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLM 94 (694)
Q Consensus 15 ~~~~L~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~ 94 (694)
.+...++++++++.++.+|..+. ++|++|++++|.+.++.+..|.++++|++|++++|.++++.+..|.++++|++|+
T Consensus 29 ~~~~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 29 SNELESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp ----CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred ccCCCcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 34455899999999999996553 8999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCC--cEEeCCCC
Q psy3329 95 LNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWL--RNLNLAEN 172 (694)
Q Consensus 95 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L--~~L~l~~n 172 (694)
+++|.++.++.. .+++|++|++++|.+..+ ..|..++++++|++|++++|.+.... +..+++| ++|++++|
T Consensus 107 Ls~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l-~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 107 VSHNRLQNISCC---PMASLRHLDLSFNDFDVL-PVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLDLV 179 (562)
T ss_dssp CTTSCCCEECSC---CCTTCSEEECCSSCCSBC-CCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEEEEEES
T ss_pred CCCCcCCccCcc---ccccCCEEECCCCCcccc-CchHhhcccCcccEEecCCCccccCc---hhhhhhceeeEEEeecc
Confidence 999999987544 899999999999999853 33467899999999999999998754 4444555 99999999
Q ss_pred CC--CCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccc---hhhhccCCCCccEEEccC
Q psy3329 173 EL--IDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAAD---LSVALKPLTKLHRLSLRN 247 (694)
Q Consensus 173 ~l--~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~---~~~~l~~l~~L~~L~l~~ 247 (694)
.+ .......+..-....+ .+++++|.+.+.++...+..+++|+.+++++|...... ....+..+++|+.+++.+
T Consensus 180 ~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~ 258 (562)
T 3a79_B 180 SYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQH 258 (562)
T ss_dssp SCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEE
T ss_pred cccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecC
Confidence 88 5433222211011122 56888898877777777888999999999998632111 112357788999999888
Q ss_pred cCCCcCCcc---cccCCCCccEEeCCCCCCcccchhhc-----CCCCCCcEEECcCCCCcccChhhhcC---CCCCcEEe
Q psy3329 248 CGLSRLPAN---TFHRFTCLQELDISHNPLIDAFTALL-----SPLESLEHLDMGYSNLQRISRSTFLK---MTSLKTLI 316 (694)
Q Consensus 248 n~i~~~~~~---~~~~~~~L~~L~L~~n~~~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~~~~~~---l~~L~~L~ 316 (694)
+.+.+.... .....++|++|++++|.+.+.+|..+ ..++.|+.+++..+.+ .++...+.. ..+|+.|+
T Consensus 259 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~ 337 (562)
T 3a79_B 259 IETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLS 337 (562)
T ss_dssp EEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEE
T ss_pred CcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEE
Confidence 876632110 11234589999999999998777766 6777777777777777 455333332 36799999
Q ss_pred ccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhcccc
Q psy3329 317 LSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNF 396 (694)
Q Consensus 317 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~ 396 (694)
+++|.+..... ...+++|++|++++|.+++..+..+. .+++|+.|++++|+++.++. +|..
T Consensus 338 l~~n~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~---~l~~L~~L~L~~N~l~~~~~---------~~~~----- 398 (562)
T 3a79_B 338 ISDTPFIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGCS---TLKRLQTLILQRNGLKNFFK---------VALM----- 398 (562)
T ss_dssp EESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCC---SCSSCCEEECCSSCCCBTTH---------HHHT-----
T ss_pred ccCCCcccccC--ccCCCCceEEECCCCccccchhhhhc---ccCCCCEEECCCCCcCCccc---------chhh-----
Confidence 99999876542 26789999999999999996666666 88999999999999975431 2211
Q ss_pred chhhhhhhhcccccccCCCCCCCceEEcCCCCCcc-cCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEcc
Q psy3329 397 DFLVILFILNETVFHENYTYPDLEELRLSGNPLHV-LPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLA 475 (694)
Q Consensus 397 ~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 475 (694)
+.. +++|+.|++++|.+++ ++...+ ..+++|+.|++++|.+++..+..+. ++|+.|+|+
T Consensus 399 -------------~~~---l~~L~~L~l~~N~l~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~ 458 (562)
T 3a79_B 399 -------------TKN---MSSLETLDVSLNSLNSHAYDRTC--AWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLH 458 (562)
T ss_dssp -------------TTT---CTTCCEEECTTSCCBSCCSSCCC--CCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECC
T ss_pred -------------hcC---CCCCCEEECCCCcCCCccChhhh--cCcccCCEEECCCCCCCcchhhhhc--CcCCEEECC
Confidence 223 8999999999999998 777767 8899999999999999886665443 799999999
Q ss_pred CCccCCCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEEEccCCccccccCcHHHHH-HHHh
Q psy3329 476 NNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWE-WATR 545 (694)
Q Consensus 476 ~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~~~~~~~-~~~~ 545 (694)
+|+++.+++ .+ ..+++|+.|+|++|+++++++..+..+++|+.+++++|||.|+|+..|+.. |...
T Consensus 459 ~N~l~~ip~-~~---~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~ 525 (562)
T 3a79_B 459 NNRIMSIPK-DV---THLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINK 525 (562)
T ss_dssp SSCCCCCCT-TT---TSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHHHHHHHHHHH
T ss_pred CCcCcccCh-hh---cCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchHHHHHHHHHh
Confidence 999996544 34 588999999999999998777778999999999999999999999999965 8765
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.9e-44 Score=398.38 Aligned_cols=451 Identities=21% Similarity=0.270 Sum_probs=374.5
Q ss_pred cCcccCCCCCceEEECcCCCCcchh-hhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCcc-CCCCCCC
Q psy3329 9 NDRRNLDNPGLITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRII-EPGVFDP 86 (694)
Q Consensus 9 ~~~~~~~~~~L~~L~Ls~~~l~~i~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~-~~~~~~~ 86 (694)
....|.++++|++|++++|.++.++ +.|..+++|++|++++|.+.++.+..|.++++|++|++++|.++.+ .+..|++
T Consensus 42 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 121 (549)
T 2z81_A 42 GHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121 (549)
T ss_dssp CSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTT
T ss_pred ChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhc
Confidence 3467899999999999999999887 7899999999999999999999998899999999999999999865 3456999
Q ss_pred CCCCCEEeCCCCc-CCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCc
Q psy3329 87 LTSLEYLMLNRCN-LTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLR 165 (694)
Q Consensus 87 l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~ 165 (694)
+++|++|++++|. +..+++..+.++++|++|++++|.+.. ..+..++.+++|++|++++|.+..++...+..+++|+
T Consensus 122 l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 199 (549)
T 2z81_A 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN--YQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVR 199 (549)
T ss_dssp CTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE--ECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBS
T ss_pred cCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc--cChhhhhccccCceEecccCcccccchhhHhhccccc
Confidence 9999999999998 666767889999999999999999985 3457789999999999999998887776667899999
Q ss_pred EEeCCCCCCCCcchhh-hcccCCCcccEEeCCCCCCCCCCCh---hhhhcCCCCcEEEcCCCCCCccch-----hhhccC
Q psy3329 166 NLNLAENELIDLDVAT-TLGQNLVHLDSLDLSNCHLKGPLSE---DAFVNATKLRTLYLSGNPLSAADL-----SVALKP 236 (694)
Q Consensus 166 ~L~l~~n~l~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~---~~~~~~~~L~~L~L~~n~l~~~~~-----~~~l~~ 236 (694)
+|++++|.+.+..... .....+++|+.|++++|.+.+..+. ..+..+++|+.+++++|.+.+... ...+..
T Consensus 200 ~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~ 279 (549)
T 2z81_A 200 YLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSE 279 (549)
T ss_dssp EEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCC
T ss_pred EEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhh
Confidence 9999999998753211 1223678999999999987543322 124568899999999987654321 113466
Q ss_pred CCCccEEEccCcCCCcCCc-----ccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccCh---hhhcC
Q psy3329 237 LTKLHRLSLRNCGLSRLPA-----NTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISR---STFLK 308 (694)
Q Consensus 237 l~~L~~L~l~~n~i~~~~~-----~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~ 308 (694)
+++|+.|.+.++.+..... ..+...++|+.|++++|.+.......+..+++|++|++++|.+++..+ ..+..
T Consensus 280 l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 359 (549)
T 2z81_A 280 LGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGA 359 (549)
T ss_dssp CTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTS
T ss_pred hcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhc
Confidence 7899999999987765321 123345789999999999876555545679999999999999987553 33678
Q ss_pred CCCCcEEeccCCcccCcCc--hhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccc
Q psy3329 309 MTSLKTLILSGNKLETLES--GLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMR 386 (694)
Q Consensus 309 l~~L~~L~L~~n~l~~~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~ 386 (694)
+++|+.|++++|+++++++ ..+..+++|++|++++|+++.++.... .+++|++|++++|+++.++.
T Consensus 360 l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~----~~~~L~~L~Ls~N~l~~l~~-------- 427 (549)
T 2z81_A 360 WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQ----WPEKMRFLNLSSTGIRVVKT-------- 427 (549)
T ss_dssp STTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCC----CCTTCCEEECTTSCCSCCCT--------
T ss_pred cccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhc----ccccccEEECCCCCcccccc--------
Confidence 9999999999999998864 568899999999999999998876433 68999999999999876543
Q ss_pred cccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCC
Q psy3329 387 TIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNT 466 (694)
Q Consensus 387 ~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 466 (694)
.+ .++|+.|++++|.+++++ ..+++|++|+|++|+|+.++. ...+
T Consensus 428 ----~~-----------------------~~~L~~L~Ls~N~l~~~~------~~l~~L~~L~Ls~N~l~~ip~--~~~l 472 (549)
T 2z81_A 428 ----CI-----------------------PQTLEVLDVSNNNLDSFS------LFLPRLQELYISRNKLKTLPD--ASLF 472 (549)
T ss_dssp ----TS-----------------------CTTCSEEECCSSCCSCCC------CCCTTCCEEECCSSCCSSCCC--GGGC
T ss_pred ----hh-----------------------cCCceEEECCCCChhhhc------ccCChhcEEECCCCccCcCCC--cccC
Confidence 11 468999999999998864 468899999999999998876 3578
Q ss_pred CCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccCh
Q psy3329 467 RNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISP 511 (694)
Q Consensus 467 ~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~ 511 (694)
++|+.|+|++|++++.+|..+ ..+++|+.|++++|.+++..|
T Consensus 473 ~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 473 PVLLVMKISRNQLKSVPDGIF---DRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp TTCCEEECCSSCCCCCCTTGG---GGCTTCCEEECCSSCBCCCHH
T ss_pred ccCCEEecCCCccCCcCHHHH---hcCcccCEEEecCCCccCCCc
Confidence 999999999999999999888 889999999999999998665
No 17
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=6e-44 Score=396.46 Aligned_cols=459 Identities=23% Similarity=0.271 Sum_probs=379.9
Q ss_pred CceEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCC
Q psy3329 18 GLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNR 97 (694)
Q Consensus 18 ~L~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~ 97 (694)
..+.++.++..++.+|..+ .+++++|++++|.++.+.+.+|.++++|++|++++|.++.+++..|.++++|++|++++
T Consensus 8 ~~~~~~c~~~~l~~ip~~l--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 85 (570)
T 2z63_A 8 PNITYQCMELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85 (570)
T ss_dssp TTTEEECCSSCCSSCCSSS--CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CCcEEEeCCCCccccCCCc--cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcC
Confidence 3467889999999999644 46899999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCC-ccccCCCCCCcEEeCCCCCCCC
Q psy3329 98 CNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLP-DNVFANNTWLRNLNLAENELID 176 (694)
Q Consensus 98 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~~~~L~~L~l~~n~l~~ 176 (694)
|.++.+.+.+|.++++|++|++++|.+..++.. .++++++|++|++++|.+..+. +..++++++|++|++++|.+..
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~--~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENF--PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (570)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTC--SCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE
T ss_pred CcCCccCHhhhcCccccccccccccccccCCCc--cccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccce
Confidence 999999899999999999999999999876542 4889999999999999999854 6779999999999999999987
Q ss_pred cchhhhcccCCCcc----cEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCC-------------
Q psy3329 177 LDVATTLGQNLVHL----DSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTK------------- 239 (694)
Q Consensus 177 ~~~~~~~~~~~~~L----~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~------------- 239 (694)
.....+. .+.+| +.+++++|.+. .+++..+... +|+.|++++|..........+..++.
T Consensus 164 ~~~~~~~--~l~~L~~~~~~L~l~~n~l~-~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~ 239 (570)
T 2z63_A 164 IYCTDLR--VLHQMPLLNLSLDLSLNPMN-FIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239 (570)
T ss_dssp ECGGGGH--HHHTCTTCCCEEECTTCCCC-EECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC
T ss_pred ecHHHcc--chhccchhhhhcccCCCCce-ecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccC
Confidence 6543332 46666 89999999984 4445556555 89999999885443322222333333
Q ss_pred -------------------ccEEEccCc-CCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCc
Q psy3329 240 -------------------LHRLSLRNC-GLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQ 299 (694)
Q Consensus 240 -------------------L~~L~l~~n-~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 299 (694)
++.++++.+ .+.+..+..+..+++|+.|++++|.+.+ +|..+..+ +|++|++++|.+.
T Consensus 240 ~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~ 317 (570)
T 2z63_A 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFG 317 (570)
T ss_dssp CSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCC-CCSEEEEESCBCS
T ss_pred chhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccC-CccEEeeccCccc
Confidence 344445444 4455555677888999999999998875 56667777 9999999999988
Q ss_pred ccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccC--ccccccCCCCCCCCeeeCCCCCCcCCC
Q psy3329 300 RISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLN--ETVFHENYTYPDLEELRLSGNPLHVLP 377 (694)
Q Consensus 300 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~--~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 377 (694)
.++. ..+++|+.|++++|.+....+. ..+++|+.|++++|.++.+. +..+. .+++|+.|++++|.+..++
T Consensus 318 ~l~~---~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~---~~~~L~~L~l~~n~l~~~~ 389 (570)
T 2z63_A 318 QFPT---LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDF---GTTSLKYLDLSFNGVITMS 389 (570)
T ss_dssp SCCB---CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHH---TCSCCCEEECCSCSEEEEE
T ss_pred ccCc---ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCcccccccccc---ccCccCEEECCCCcccccc
Confidence 7664 4788999999999988766553 67899999999999998764 34444 7899999999999876433
Q ss_pred CcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCC-CCCCCcCCCCccEEEccCCcCC
Q psy3329 378 DSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPT-GNLLPPQLSRLRSLDLSRCKID 456 (694)
Q Consensus 378 ~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~~~l~~L~~L~Ls~n~l~ 456 (694)
. . +.. +++|+.|++++|.+++.++ ..+ ..+++|+.|++++|.++
T Consensus 390 ~------------~------------------~~~---l~~L~~L~l~~n~l~~~~~~~~~--~~l~~L~~L~l~~n~l~ 434 (570)
T 2z63_A 390 S------------N------------------FLG---LEQLEHLDFQHSNLKQMSEFSVF--LSLRNLIYLDISHTHTR 434 (570)
T ss_dssp E------------E------------------EET---CTTCCEEECTTSEEESCTTSCTT--TTCTTCCEEECTTSCCE
T ss_pred c------------c------------------ccc---cCCCCEEEccCCccccccchhhh--hcCCCCCEEeCcCCccc
Confidence 2 1 222 8999999999999998766 456 88999999999999999
Q ss_pred ccCCCCCCCCCCCCEEEccCCccC-CCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEEEccCCcccc
Q psy3329 457 YLPPNVFNNTRNITSLNLANNNLS-MTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKC 532 (694)
Q Consensus 457 ~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c 532 (694)
+..+..|.++++|++|++++|.++ +..|..+ ..+++|+.|++++|++++..|..+..+++|+.|++++|.+..
T Consensus 435 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 508 (570)
T 2z63_A 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF---TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS 508 (570)
T ss_dssp ECCTTTTTTCTTCCEEECTTCEEGGGEECSCC---TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred ccchhhhhcCCcCcEEECcCCcCccccchhhh---hcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCC
Confidence 999999999999999999999998 5677777 889999999999999999999999999999999999998865
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.9e-42 Score=386.33 Aligned_cols=421 Identities=19% Similarity=0.230 Sum_probs=247.4
Q ss_pred CCceEEECcCCCCc-chhhhhhcCCCCcEEEccCCcCCcc---------------------------------Chhhc--
Q psy3329 17 PGLITINLNANPIQ-PVEGAFLVARSLLYLYMQECTLSKI---------------------------------NPQFF-- 60 (694)
Q Consensus 17 ~~L~~L~Ls~~~l~-~i~~~~~~~~~L~~L~l~~n~l~~~---------------------------------~~~~~-- 60 (694)
.+++.|+|+++.+. .+|..+..+++|++|+|++|.+... .+..+
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 58999999999998 7889999999999999999965100 00000
Q ss_pred -----------------cCCCCCCeEECC--CCCCCccCCCCCCCCCCCCEEeCCCCcCCcc-----------------C
Q psy3329 61 -----------------TNLTTLNKLDLS--GNPLRIIEPGVFDPLTSLEYLMLNRCNLTYI-----------------S 104 (694)
Q Consensus 61 -----------------~~l~~L~~L~Ls--~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-----------------~ 104 (694)
.....++.+.+. .|.++++ |..|+++++|++|+|++|.+++. .
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~i-p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFV-SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEE-CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCccC-CHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 011122333332 4667774 55588888888888888888883 5
Q ss_pred hhhhc--CCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCC-CCC-CCccccCCC------CCCcEEeCCCCCC
Q psy3329 105 PSAFD--NLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSG-ISN-LPDNVFANN------TWLRNLNLAENEL 174 (694)
Q Consensus 105 ~~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-i~~-~~~~~~~~~------~~L~~L~l~~n~l 174 (694)
|..++ ++++|++|++++|.+.. .+|..++++++|++|++++|. +++ ..+..+..+ ++|++|++++|.+
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l 317 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPNLT--KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTTCS--SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred chhhhhcccCCCCEEEecCCcCCc--cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence 77777 88888888888888763 566778888888888888887 765 333444443 7777777777776
Q ss_pred CCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCC-ccEEEccCcCCCcC
Q psy3329 175 IDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTK-LHRLSLRNCGLSRL 253 (694)
Q Consensus 175 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~-L~~L~l~~n~i~~~ 253 (694)
+.++....+. .+++|+.|++++|.+.|.+| .+..+++|+.|++++|.++..+ ..+..+++ |+.|++++|.++.+
T Consensus 318 ~~ip~~~~l~-~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~~lp--~~l~~l~~~L~~L~Ls~N~l~~l 392 (636)
T 4eco_A 318 KTFPVETSLQ-KMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQITEIP--ANFCGFTEQVENLSFAHNKLKYI 392 (636)
T ss_dssp SSCCCHHHHT-TCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEEECC--TTSEEECTTCCEEECCSSCCSSC
T ss_pred CccCchhhhc-cCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCcccccc--HhhhhhcccCcEEEccCCcCccc
Confidence 6432210121 45555555555555544454 3445555555555555444221 12344444 55555555544443
Q ss_pred CcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhc-------CCCCCcEEeccCCcccCcC
Q psy3329 254 PANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFL-------KMTSLKTLILSGNKLETLE 326 (694)
Q Consensus 254 ~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~ 326 (694)
+ ..+...+ +++|++|++++|.+++..+..+. .+++|+.|+|++|.++.++
T Consensus 393 p-~~~~~~~----------------------l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp 449 (636)
T 4eco_A 393 P-NIFDAKS----------------------VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFP 449 (636)
T ss_dssp C-SCCCTTC----------------------SSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCC
T ss_pred c-hhhhhcc----------------------cCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCC
Confidence 3 2222222 11444444444444444443343 4455666666666666555
Q ss_pred chhhcCCCCCCEEeCCCCCCcccCccccccC----CCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhh
Q psy3329 327 SGLFQNLTHLSVLELNNCGLTRLNETVFHEN----YTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVIL 402 (694)
Q Consensus 327 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~----~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~ 402 (694)
...+..+++|+.|++++|.++.++...+... ..+++|+.|++++|+++.++. .+
T Consensus 450 ~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~------------~~---------- 507 (636)
T 4eco_A 450 KELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSD------------DF---------- 507 (636)
T ss_dssp THHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCG------------GG----------
T ss_pred HHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccCh------------hh----------
Confidence 5555556666666666666665555444310 012256666666666553332 11
Q ss_pred hhhccccc-ccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEc------cCCcCCccCCCCCCCCCCCCEEEcc
Q psy3329 403 FILNETVF-HENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDL------SRCKIDYLPPNVFNNTRNITSLNLA 475 (694)
Q Consensus 403 ~~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L------s~n~l~~~~~~~~~~l~~L~~L~L~ 475 (694)
+ .. +++|+.|++++|.++++ |..+ ..+++|+.|+| ++|++.+..|..+..+++|++|+|+
T Consensus 508 -------~~~~---l~~L~~L~Ls~N~l~~i-p~~~--~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls 574 (636)
T 4eco_A 508 -------RATT---LPYLVGIDLSYNSFSKF-PTQP--LNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG 574 (636)
T ss_dssp -------STTT---CTTCCEEECCSSCCSSC-CCGG--GGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred -------hhcc---CCCcCEEECCCCCCCCc-Chhh--hcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECC
Confidence 0 01 56666677777666663 3334 56677777777 3455666666666666667777777
Q ss_pred CCccCCCcchhhhhhcccCCCcEEECCCCccccc
Q psy3329 476 NNNLSMTSELSFQFLDVLLELESLDLSNNNLTHI 509 (694)
Q Consensus 476 ~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~ 509 (694)
+|+++ .+|..+ . ++|+.|+|++|++..+
T Consensus 575 ~N~l~-~ip~~~---~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 575 SNDIR-KVNEKI---T--PNISVLDIKDNPNISI 602 (636)
T ss_dssp SSCCC-BCCSCC---C--TTCCEEECCSCTTCEE
T ss_pred CCcCC-ccCHhH---h--CcCCEEECcCCCCccc
Confidence 77663 334333 2 5666677776665543
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.4e-42 Score=388.14 Aligned_cols=448 Identities=18% Similarity=0.214 Sum_probs=322.5
Q ss_pred CCceEEECcCCCCc-chhhhhhcCCCCcEEEc-cCCcCCccChhh-----------------------------------
Q psy3329 17 PGLITINLNANPIQ-PVEGAFLVARSLLYLYM-QECTLSKINPQF----------------------------------- 59 (694)
Q Consensus 17 ~~L~~L~Ls~~~l~-~i~~~~~~~~~L~~L~l-~~n~l~~~~~~~----------------------------------- 59 (694)
.+++.|+|+++.+. .+|..+..+++|++|+| ++|.+.+..+-.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 58999999999998 78899999999999999 777554431100
Q ss_pred ----------------ccCCCCCCeEECCC--CCCCccCCCCCCCCCCCCEEeCCCCcCCc-----------------cC
Q psy3329 60 ----------------FTNLTTLNKLDLSG--NPLRIIEPGVFDPLTSLEYLMLNRCNLTY-----------------IS 104 (694)
Q Consensus 60 ----------------~~~l~~L~~L~Ls~--n~~~~~~~~~~~~l~~L~~L~L~~n~l~~-----------------~~ 104 (694)
......++.+.+.. |.++++ |..|+++++|++|+|++|.+++ ..
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~I-P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFI-SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEE-CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccch-hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 01122333344433 666665 4458888888888888888888 24
Q ss_pred hhhhc--CCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCC-CCC-CCcc-------ccCCCCCCcEEeCCCCC
Q psy3329 105 PSAFD--NLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSG-ISN-LPDN-------VFANNTWLRNLNLAENE 173 (694)
Q Consensus 105 ~~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-i~~-~~~~-------~~~~~~~L~~L~l~~n~ 173 (694)
|..++ ++++|+.|++++|.+. +.+|..++++++|+.|++++|. +++ ..+. .+..+++|+.|++++|.
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~--~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNM--TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTC--CSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred ChhhhhccCCCCCEEECcCCCCC--ccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence 66766 8888888888888776 3556778888888888888887 765 2222 23455688888888888
Q ss_pred CCCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCC-ccEEEccCcCCCc
Q psy3329 174 LIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTK-LHRLSLRNCGLSR 252 (694)
Q Consensus 174 l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~-L~~L~l~~n~i~~ 252 (694)
+..++....+. .+++|+.|++++|.+. .+| .+..+++|+.|++++|.++..+ ..+..+++ |+.|++++|.++.
T Consensus 560 L~~ip~~~~l~-~L~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~~lp--~~l~~l~~~L~~L~Ls~N~L~~ 633 (876)
T 4ecn_A 560 LEEFPASASLQ-KMVKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIEEIP--EDFCAFTDQVEGLGFSHNKLKY 633 (876)
T ss_dssp CCBCCCHHHHT-TCTTCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCSCCC--TTSCEECTTCCEEECCSSCCCS
T ss_pred CCccCChhhhh-cCCCCCEEECCCCCcc-cch--hhcCCCcceEEECcCCccccch--HHHhhccccCCEEECcCCCCCc
Confidence 88544311232 7888999999998885 777 5888899999999999888433 33577788 9999999999987
Q ss_pred CCcccccCCC--CccEEeCCCCCCcccchhhc---C--CCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCc
Q psy3329 253 LPANTFHRFT--CLQELDISHNPLIDAFTALL---S--PLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETL 325 (694)
Q Consensus 253 ~~~~~~~~~~--~L~~L~L~~n~~~~~~~~~~---~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 325 (694)
++ ..+..++ +|+.|++++|.+.+.+|... . .+++|+.|+|++|.++.++...+..+++|+.|+|++|.+..+
T Consensus 634 lp-~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~i 712 (876)
T 4ecn_A 634 IP-NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSI 712 (876)
T ss_dssp CC-SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCC
T ss_pred Cc-hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCcc
Confidence 76 4555554 49999999999988665322 2 345899999999999998888888999999999999999988
Q ss_pred CchhhcCC-------CCCCEEeCCCCCCcccCcccc-ccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccc
Q psy3329 326 ESGLFQNL-------THLSVLELNNCGLTRLNETVF-HENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFD 397 (694)
Q Consensus 326 ~~~~l~~l-------~~L~~L~L~~n~l~~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~ 397 (694)
+...+... ++|+.|+|++|+++.++...+ . .+++|+.|+|++|+++.+|. .+
T Consensus 713 p~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~---~l~~L~~L~Ls~N~L~~lp~------------~l----- 772 (876)
T 4ecn_A 713 PENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRAT---TLPYLSNMDVSYNCFSSFPT------------QP----- 772 (876)
T ss_dssp CTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTT---TCTTCCEEECCSSCCSSCCC------------GG-----
T ss_pred ChHHhccccccccccCCccEEECCCCCCccchHHhhhc---cCCCcCEEEeCCCCCCccch------------hh-----
Confidence 77665543 389999999999998776654 2 45666666666666654322 11
Q ss_pred hhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCC
Q psy3329 398 FLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANN 477 (694)
Q Consensus 398 ~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 477 (694)
.. +++|+.|+|++|. ++++|++.+..|..|.++++|+.|+|++|
T Consensus 773 -------------~~---L~~L~~L~Ls~N~--------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N 816 (876)
T 4ecn_A 773 -------------LN---SSQLKAFGIRHQR--------------------DAEGNRILRQWPTGITTCPSLIQLQIGSN 816 (876)
T ss_dssp -------------GG---CTTCCEEECCCCB--------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred -------------hc---CCCCCEEECCCCC--------------------CcccccccccChHHHhcCCCCCEEECCCC
Confidence 11 5555666555542 33457777777777778888888888888
Q ss_pred ccCCCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEEEccCCcccc--ccCc
Q psy3329 478 NLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKC--DCNI 536 (694)
Q Consensus 478 ~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c--~c~~ 536 (694)
++ +.+|..+ . ++|+.|||++|++..+.+..+.....+..+.+.+|++.+ +|+.
T Consensus 817 ~L-~~Ip~~l---~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~~ 871 (876)
T 4ecn_A 817 DI-RKVDEKL---T--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDA 871 (876)
T ss_dssp CC-CBCCSCC---C--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSEEESCGG
T ss_pred CC-CccCHhh---c--CCCCEEECCCCCCCccChHHccccccchheeecCCCccccCCCCC
Confidence 88 4445444 2 578888888888877665555444445556667777655 7764
No 20
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.5e-40 Score=358.08 Aligned_cols=396 Identities=21% Similarity=0.311 Sum_probs=281.2
Q ss_pred ceEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCC-ccCCCCCCCCCCCCEEeCCC
Q psy3329 19 LITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLR-IIEPGVFDPLTSLEYLMLNR 97 (694)
Q Consensus 19 L~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~-~~~~~~~~~l~~L~~L~L~~ 97 (694)
-+.++.+++.++.+|. -.++|++|++++|.++++.|..|.++++|++|++++|.+. .+++..|.++++|++|++++
T Consensus 12 ~~~~~c~~~~l~~lp~---l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 12 GYNAICINRGLHQVPE---LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TTEEECCSSCCSSCCC---CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred ccccCcCCCCcccCCC---CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 3468899999999986 3478999999999999998999999999999999999987 67777899999999999999
Q ss_pred CcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccc-cCCCCCCcEEeCCCCCCCC
Q psy3329 98 CNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNV-FANNTWLRNLNLAENELID 176 (694)
Q Consensus 98 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~~~~L~~L~l~~n~l~~ 176 (694)
|.++++.|..|.++++|++|++++|.++........+..+++|++|++++|.+..+.+.. +..+++|++|++++|.+.+
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 999999899999999999999999998742121123778888888888888888775543 6666667777766666554
Q ss_pred cchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcC--CCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCC
Q psy3329 177 LDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNA--TKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLP 254 (694)
Q Consensus 177 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~--~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~ 254 (694)
..... +..+ .+|+.|++++|. +..++
T Consensus 169 ~~~~~---------------------------l~~l~~~~L~~L~l~~n~-------------------------l~~~~ 196 (455)
T 3v47_A 169 ICEED---------------------------LLNFQGKHFTLLRLSSIT-------------------------LQDMN 196 (455)
T ss_dssp CCTTT---------------------------SGGGTTCEEEEEECTTCB-------------------------CTTCS
T ss_pred cChhh---------------------------hhccccccccccccccCc-------------------------ccccc
Confidence 32211 1111 233333333333 33222
Q ss_pred ccc--------ccCCCCccEEeCCCCCCcccchhhcCC---CCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCccc
Q psy3329 255 ANT--------FHRFTCLQELDISHNPLIDAFTALLSP---LESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLE 323 (694)
Q Consensus 255 ~~~--------~~~~~~L~~L~L~~n~~~~~~~~~~~~---l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 323 (694)
... +..+++|+.|++++|.+.+..+..+.. .++|+.|++++|.+.... +..+.+.
T Consensus 197 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--------------~~~~~~~ 262 (455)
T 3v47_A 197 EYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS--------------FGHTNFK 262 (455)
T ss_dssp TTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC--------------TTCCSSC
T ss_pred hhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccc--------------cchhhhc
Confidence 111 223445566666666555544443322 144555555544332211 0011111
Q ss_pred CcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhhh
Q psy3329 324 TLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILF 403 (694)
Q Consensus 324 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~ 403 (694)
......+..+ ..++|+.|++++|.++.... ..
T Consensus 263 ~~~~~~~~~~-------------------------~~~~L~~L~l~~n~l~~~~~-----------~~------------ 294 (455)
T 3v47_A 263 DPDNFTFKGL-------------------------EASGVKTCDLSKSKIFALLK-----------SV------------ 294 (455)
T ss_dssp CCCTTTTGGG-------------------------TTSCCCEEECCSSCCCEECT-----------TT------------
T ss_pred cCcccccccc-------------------------cccCceEEEecCccccccch-----------hh------------
Confidence 1111111110 12344555555554432211 00
Q ss_pred hhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCc
Q psy3329 404 ILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTS 483 (694)
Q Consensus 404 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 483 (694)
+.. +++|++|++++|.++++++..| ..+++|+.|+|++|.++++++..|.++++|++|+|++|++++..
T Consensus 295 ------~~~---l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 363 (455)
T 3v47_A 295 ------FSH---FTDLEQLTLAQNEINKIDDNAF--WGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALG 363 (455)
T ss_dssp ------TTT---CTTCCEEECTTSCCCEECTTTT--TTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEEC
T ss_pred ------ccc---CCCCCEEECCCCcccccChhHh--cCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccC
Confidence 112 6778888888888888888888 88999999999999999999999999999999999999999998
Q ss_pred chhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEEEccCCccccccC-cHHHHHHHHh
Q psy3329 484 ELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCN-IADMWEWATR 545 (694)
Q Consensus 484 ~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~-~~~~~~~~~~ 545 (694)
|..| ..+++|++|+|++|+++++++..+..+++|+.+++++|++.|+|+ ..|+..|...
T Consensus 364 ~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~ 423 (455)
T 3v47_A 364 DQSF---LGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 423 (455)
T ss_dssp TTTT---TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHH
T ss_pred hhhc---cccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHHHHHHHh
Confidence 8888 889999999999999999988888999999999999999999998 7889999876
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.5e-42 Score=375.18 Aligned_cols=439 Identities=19% Similarity=0.185 Sum_probs=356.8
Q ss_pred CCceEEECcCCCCcchh-hhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeC
Q psy3329 17 PGLITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLML 95 (694)
Q Consensus 17 ~~L~~L~Ls~~~l~~i~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L 95 (694)
++|++|++++|.++.++ ..|..+++|++|++++|.++++.|..|.++++|++|++++|+++.++.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH---PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC---CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc---ccCCccEEec
Confidence 79999999999999887 7899999999999999999999999999999999999999999988765 7999999999
Q ss_pred CCCcCCcc-ChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCC--CEEEccCCCC--CCCCccccCCCC-CCcEEeC
Q psy3329 96 NRCNLTYI-SPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKL--DTLDLRQSGI--SNLPDNVFANNT-WLRNLNL 169 (694)
Q Consensus 96 ~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L--~~L~L~~n~i--~~~~~~~~~~~~-~L~~L~l 169 (694)
++|.++++ .|..|+++++|++|++++|.+.. ..+..+++| +.|++++|.+ ....+..+..+. ....+++
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~-----~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l 172 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK-----SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF 172 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG-----GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEEC
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch-----hhccccccceeeEEEeecccccccccccccccccccceEEEEe
Confidence 99999985 57899999999999999999875 346677888 9999999999 666666666655 3446678
Q ss_pred CCCCCCCcchhhhcccCCCcccEEeCCCCC-------CCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhc--cCCCCc
Q psy3329 170 AENELIDLDVATTLGQNLVHLDSLDLSNCH-------LKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVAL--KPLTKL 240 (694)
Q Consensus 170 ~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~-------~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l--~~l~~L 240 (694)
++|.+.+....... ..+++|+.+++++|. +.+.++ .+..+++|+.|++++|.+.+....... ...++|
T Consensus 173 ~~n~~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~~--~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L 249 (520)
T 2z7x_B 173 PTNKEFHFILDVSV-KTVANLELSNIKCVLEDNKCSYFLSILA--KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTV 249 (520)
T ss_dssp CSSSCCCCCCCCCC-TTCSEEEECCEEECCSTTTTHHHHHHHH--GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSC
T ss_pred ccCcchhhhhhhhh-hcccceeeccccccccccccceeecchh--hhccccchhhccccccccCHHHHHHHHHHhhhCcc
Confidence 88877653222222 378999999999986 433333 578899999999999887654432211 124699
Q ss_pred cEEEccCcCCCcCCcccc-----cCCCCccEEeCCCCCCcccchhhcCCC---CCCcEEECcCCCCcccChhhhcCCCCC
Q psy3329 241 HRLSLRNCGLSRLPANTF-----HRFTCLQELDISHNPLIDAFTALLSPL---ESLEHLDMGYSNLQRISRSTFLKMTSL 312 (694)
Q Consensus 241 ~~L~l~~n~i~~~~~~~~-----~~~~~L~~L~L~~n~~~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L 312 (694)
+.|++++|.+++..+..+ ..+++|+.+++++|.+ ......+..+ .+|+.|++++|.+..+. .+..+++|
T Consensus 250 ~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L 326 (520)
T 2z7x_B 250 WYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPF 326 (520)
T ss_dssp SEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCC
T ss_pred cEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcc
Confidence 999999999984444555 8899999999999988 3222333333 67999999999987665 23688999
Q ss_pred cEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCc--cccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccc
Q psy3329 313 KTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNE--TVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPT 390 (694)
Q Consensus 313 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~ 390 (694)
++|++++|++++..+..+..+++|+.|++++|++++++. ..+. .+++|++|++++|++.. .+|.
T Consensus 327 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~---~l~~L~~L~Ls~N~l~~-----------~l~~ 392 (520)
T 2z7x_B 327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTT---QMKSLQQLDISQNSVSY-----------DEKK 392 (520)
T ss_dssp CEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHT---TCTTCCEEECCSSCCBC-----------CGGG
T ss_pred cEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHh---hCCCCCEEECCCCcCCc-----------cccc
Confidence 999999999999888889999999999999999997543 4455 78999999999999875 1222
Q ss_pred hhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCC
Q psy3329 391 QIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNIT 470 (694)
Q Consensus 391 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 470 (694)
.. +.. +++|++|++++|.+++..+..+ . ++|+.|+|++|+|+.+++..+ .+++|+
T Consensus 393 ~~-----------------~~~---l~~L~~L~Ls~N~l~~~~~~~l--~--~~L~~L~Ls~N~l~~ip~~~~-~l~~L~ 447 (520)
T 2z7x_B 393 GD-----------------CSW---TKSLLSLNMSSNILTDTIFRCL--P--PRIKVLDLHSNKIKSIPKQVV-KLEALQ 447 (520)
T ss_dssp CS-----------------CCC---CTTCCEEECCSSCCCGGGGGSC--C--TTCCEEECCSSCCCCCCGGGG-GCTTCC
T ss_pred ch-----------------hcc---CccCCEEECcCCCCCcchhhhh--c--ccCCEEECCCCcccccchhhh-cCCCCC
Confidence 21 223 7899999999999987766554 2 799999999999998877654 899999
Q ss_pred EEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccCh
Q psy3329 471 SLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISP 511 (694)
Q Consensus 471 ~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~ 511 (694)
+|+|++|+++.+++..+ ..+++|+.|++++|.+++..+
T Consensus 448 ~L~L~~N~l~~l~~~~~---~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 448 ELNVASNQLKSVPDGIF---DRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp EEECCSSCCCCCCTTTT---TTCTTCCEEECCSSCBCCCHH
T ss_pred EEECCCCcCCccCHHHh---ccCCcccEEECcCCCCcccCC
Confidence 99999999998766656 889999999999999998543
No 22
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.9e-42 Score=383.04 Aligned_cols=445 Identities=18% Similarity=0.247 Sum_probs=303.4
Q ss_pred CCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCC------C-----CCCCCEEeCCCCcCCccChhhh
Q psy3329 40 RSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFD------P-----LTSLEYLMLNRCNLTYISPSAF 108 (694)
Q Consensus 40 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~------~-----l~~L~~L~L~~n~l~~~~~~~l 108 (694)
.+++.|+|+++.+.+..|.+++++++|++|+|++|.+.... ..++ . +..|+ ++++++.+.+.++..+
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~-~~~~~~~~~~~~~~~~~~~l~-l~l~~~~l~~~~~~~~ 158 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNE-RLFGPKGISANMSDEQKQKMR-MHYQKTFVDYDPREDF 158 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTC-CSBSTTSBCTTCCHHHHHHHH-THHHHHHTCCCGGGGS
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCC-ccccccccccCchHHHHHHHH-hhHHHhhhccCchhhH
Confidence 47899999999999888889999999999999999652111 0011 0 11222 3333333333222222
Q ss_pred cC-------------------CCCCCEEECC--CCcCCccchhhhhhcCCCCCCEEEccCCCCCCC--------------
Q psy3329 109 DN-------------------LNHLKTLELS--QNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNL-------------- 153 (694)
Q Consensus 109 ~~-------------------l~~L~~L~l~--~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~-------------- 153 (694)
.. ...++.+.+. .|.++. +|..++++++|++|++++|.+++.
T Consensus 159 ~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~---ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~ 235 (636)
T 4eco_A 159 SDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF---VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYA 235 (636)
T ss_dssp CHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE---ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred HHHHHHHhhcCccccccccccccchhhhhhccccCCCcc---CCHHHhcccCCCEEECcCCccccccccccccccccchh
Confidence 10 0111111111 233331 344455555555555555555541
Q ss_pred ---CccccC--CCCCCcEEeCCCCCCCCcchhhhcccCCCcccEEeCCCCC-CCC-CCChhhhhc------CCCCcEEEc
Q psy3329 154 ---PDNVFA--NNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCH-LKG-PLSEDAFVN------ATKLRTLYL 220 (694)
Q Consensus 154 ---~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~-~~~-~~~~~~~~~------~~~L~~L~L 220 (694)
.+..+. ++++|++|++++|.+.+... ..+. .+++|++|++++|. +.+ .+|. .+.. +++|+.|++
T Consensus 236 ~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p-~~l~-~l~~L~~L~Ls~n~~l~~~~lp~-~~~~L~~~~~l~~L~~L~L 312 (636)
T 4eco_A 236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP-TFLK-ALPEMQLINVACNRGISGEQLKD-DWQALADAPVGEKIQIIYI 312 (636)
T ss_dssp HHHTTSCCCGGGCTTCCEEEEECCTTCSSCC-TTTT-TCSSCCEEECTTCTTSCHHHHHH-HHHHHHHSGGGGTCCEEEC
T ss_pred cccCchhhhhcccCCCCEEEecCCcCCccCh-HHHh-cCCCCCEEECcCCCCCccccchH-HHHhhhccccCCCCCEEEC
Confidence 222344 55555555555555443211 1111 45556666666655 544 3443 2333 377888888
Q ss_pred CCCCCCccchhhhccCCCCccEEEccCcCCC-cCCcccccCCCCccEEeCCCCCCcccchhhcCCCCC-CcEEECcCCCC
Q psy3329 221 SGNPLSAADLSVALKPLTKLHRLSLRNCGLS-RLPANTFHRFTCLQELDISHNPLIDAFTALLSPLES-LEHLDMGYSNL 298 (694)
Q Consensus 221 ~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~-~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~-L~~L~L~~n~l 298 (694)
++|.++.++....+..+++|+.|++++|.++ .++ .+..+++|+.|++++|.+. .+|..+..+++ |++|++++|.+
T Consensus 313 ~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l 389 (636)
T 4eco_A 313 GYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKL 389 (636)
T ss_dssp CSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCC
T ss_pred CCCcCCccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcC
Confidence 8887774432124577788888888888888 555 6778888888999888887 56667888888 99999999998
Q ss_pred cccChhhhcCC--CCCcEEeccCCcccCcCchhhc-------CCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCC
Q psy3329 299 QRISRSTFLKM--TSLKTLILSGNKLETLESGLFQ-------NLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLS 369 (694)
Q Consensus 299 ~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~l~-------~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls 369 (694)
+.++ ..+..+ ++|+.|++++|.+.+..+..+. .+++|+.|++++|.++.++...+. .+++|+.|+++
T Consensus 390 ~~lp-~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~---~l~~L~~L~Ls 465 (636)
T 4eco_A 390 KYIP-NIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFS---TGSPLSSINLM 465 (636)
T ss_dssp SSCC-SCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHH---TTCCCSEEECC
T ss_pred cccc-hhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHc---cCCCCCEEECC
Confidence 8665 455554 4899999999999998877777 788999999999999999988887 78999999999
Q ss_pred CCCCcCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEE
Q psy3329 370 GNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLD 449 (694)
Q Consensus 370 ~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~ 449 (694)
+|+++.++....... +. .+. .+++|+.|++++|.++.++.. +....+++|+.|+
T Consensus 466 ~N~l~~i~~~~~~~~----~~------------------~~~---~l~~L~~L~Ls~N~l~~lp~~-~~~~~l~~L~~L~ 519 (636)
T 4eco_A 466 GNMLTEIPKNSLKDE----NE------------------NFK---NTYLLTSIDLRFNKLTKLSDD-FRATTLPYLVGID 519 (636)
T ss_dssp SSCCSBCCSSSSEET----TE------------------ECT---TGGGCCEEECCSSCCCBCCGG-GSTTTCTTCCEEE
T ss_pred CCCCCCcCHHHhccc----cc------------------ccc---ccCCccEEECcCCcCCccChh-hhhccCCCcCEEE
Confidence 999986654211000 00 000 144899999999999976643 3112789999999
Q ss_pred ccCCcCCccCCCCCCCCCCCCEEEc------cCCccCCCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEE
Q psy3329 450 LSRCKIDYLPPNVFNNTRNITSLNL------ANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSI 523 (694)
Q Consensus 450 Ls~n~l~~~~~~~~~~l~~L~~L~L------~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l 523 (694)
|++|+|+++ |..+..+++|+.|+| ++|++.+.+|..+ ..+++|+.|+|++|+++.+ |..+. ++|+.|
T Consensus 520 Ls~N~l~~i-p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~i-p~~~~--~~L~~L 592 (636)
T 4eco_A 520 LSYNSFSKF-PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGI---TLCPSLTQLQIGSNDIRKV-NEKIT--PNISVL 592 (636)
T ss_dssp CCSSCCSSC-CCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTG---GGCSSCCEEECCSSCCCBC-CSCCC--TTCCEE
T ss_pred CCCCCCCCc-ChhhhcCCCCCEEECCCCcccccCcccccChHHH---hcCCCCCEEECCCCcCCcc-CHhHh--CcCCEE
Confidence 999999995 555788999999999 5688899999888 8899999999999999554 44443 799999
Q ss_pred EccCCcccc
Q psy3329 524 KLVGNPWKC 532 (694)
Q Consensus 524 ~l~~N~~~c 532 (694)
++++|++.|
T Consensus 593 ~Ls~N~l~~ 601 (636)
T 4eco_A 593 DIKDNPNIS 601 (636)
T ss_dssp ECCSCTTCE
T ss_pred ECcCCCCcc
Confidence 999999987
No 23
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.1e-40 Score=375.24 Aligned_cols=426 Identities=18% Similarity=0.197 Sum_probs=249.5
Q ss_pred CCCcEEEccCCcCCccChhhccCCCCCCeEEC-CCCCCCccCCCC-----------------------------------
Q psy3329 40 RSLLYLYMQECTLSKINPQFFTNLTTLNKLDL-SGNPLRIIEPGV----------------------------------- 83 (694)
Q Consensus 40 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L-s~n~~~~~~~~~----------------------------------- 83 (694)
.+++.|+|+++.+.+..|..++++++|++|+| ++|.+.+..+..
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57999999999999888899999999999999 778665432210
Q ss_pred ----------------CCCCCCCCEEeCCC--CcCCccChhhhcCCCCCCEEECCCCcCCcc---------------chh
Q psy3329 84 ----------------FDPLTSLEYLMLNR--CNLTYISPSAFDNLNHLKTLELSQNKLKSH---------------IDW 130 (694)
Q Consensus 84 ----------------~~~l~~L~~L~L~~--n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~---------------~~~ 130 (694)
......++.+.+.. |.++++ |..++++++|+.|+|++|.++.. +.+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~I-P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFI-SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEE-CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccch-hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 01112233333332 566663 56677777777777777777630 025
Q ss_pred hhhhc--CCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCC-CCCcchhhhcc------cCCCcccEEeCCCCCCC
Q psy3329 131 TLVLG--NLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENE-LIDLDVATTLG------QNLVHLDSLDLSNCHLK 201 (694)
Q Consensus 131 ~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~------~~~~~L~~L~l~~n~~~ 201 (694)
|..++ ++++|+.|+|++|.+.+..+..+.++++|+.|++++|. +++...+..++ ..+++|+.|++++|.+.
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 55555 77777777777777666666667777777777777776 54311221111 12335666666666553
Q ss_pred CCCCh-hhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCC-ccEEeCCCCCCcccch
Q psy3329 202 GPLSE-DAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTC-LQELDISHNPLIDAFT 279 (694)
Q Consensus 202 ~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~-L~~L~L~~n~~~~~~~ 279 (694)
.+|. ..+..+++|+.|++++|.++.++ .+..+++|+.|++++|.++.++ ..+..+++ |+.|++++|.+. .+|
T Consensus 562 -~ip~~~~l~~L~~L~~L~Ls~N~l~~lp---~~~~L~~L~~L~Ls~N~l~~lp-~~l~~l~~~L~~L~Ls~N~L~-~lp 635 (876)
T 4ecn_A 562 -EFPASASLQKMVKLGLLDCVHNKVRHLE---AFGTNVKLTDLKLDYNQIEEIP-EDFCAFTDQVEGLGFSHNKLK-YIP 635 (876)
T ss_dssp -BCCCHHHHTTCTTCCEEECTTSCCCBCC---CCCTTSEESEEECCSSCCSCCC-TTSCEECTTCCEEECCSSCCC-SCC
T ss_pred -ccCChhhhhcCCCCCEEECCCCCcccch---hhcCCCcceEEECcCCccccch-HHHhhccccCCEEECcCCCCC-cCc
Confidence 4443 24555555555555555555222 3355555555555555555443 23444555 555555555554 333
Q ss_pred hhcCCCCC--CcEEECcCCCCcccChhh---hc--CCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCcc
Q psy3329 280 ALLSPLES--LEHLDMGYSNLQRISRST---FL--KMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNET 352 (694)
Q Consensus 280 ~~~~~l~~--L~~L~L~~n~l~~~~~~~---~~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 352 (694)
..+..++. |+.|+|++|.+.+..+.. +. .+++|+.|+|++|.+..++...+..+++|+.|+|++|.++.++..
T Consensus 636 ~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~ 715 (876)
T 4ecn_A 636 NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPEN 715 (876)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTT
T ss_pred hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChH
Confidence 44433322 555555555554432211 11 223444455555544444444444444444444444444444433
Q ss_pred ccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCccc
Q psy3329 353 VFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVL 432 (694)
Q Consensus 353 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 432 (694)
.+.. .. + . .. .+++|+.|+|++|.++.+
T Consensus 716 ~~~~---~~---------------------------~--~-----------------l~---nl~~L~~L~Ls~N~L~~l 743 (876)
T 4ecn_A 716 SLKP---KD---------------------------G--N-----------------YK---NTYLLTTIDLRFNKLTSL 743 (876)
T ss_dssp SSSC---TT---------------------------S--C-----------------CT---TGGGCCEEECCSSCCCCC
T ss_pred Hhcc---cc---------------------------c--c-----------------cc---ccCCccEEECCCCCCccc
Confidence 3320 00 0 0 00 033666677777766644
Q ss_pred CCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccC------CccCCCcchhhhhhcccCCCcEEECCCCcc
Q psy3329 433 PTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLAN------NNLSMTSELSFQFLDVLLELESLDLSNNNL 506 (694)
Q Consensus 433 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~------N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l 506 (694)
+. .+....+++|+.|+|++|.|+++ |..+..+++|+.|+|++ |++.+.+|..+ ..+++|+.|+|++|++
T Consensus 744 p~-~l~~~~l~~L~~L~Ls~N~L~~l-p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l---~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 744 SD-DFRATTLPYLSNMDVSYNCFSSF-PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI---TTCPSLIQLQIGSNDI 818 (876)
T ss_dssp CG-GGSTTTCTTCCEEECCSSCCSSC-CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTG---GGCSSCCEEECCSSCC
T ss_pred hH-HhhhccCCCcCEEEeCCCCCCcc-chhhhcCCCCCEEECCCCCCcccccccccChHHH---hcCCCCCEEECCCCCC
Confidence 43 22002567777777777777775 33456777777777765 88999999888 8899999999999999
Q ss_pred cccChhhhcCCCcccEEEccCCcccc
Q psy3329 507 THISPTVLRHNRAITSIKLVGNPWKC 532 (694)
Q Consensus 507 ~~~~~~~~~~~~~l~~l~l~~N~~~c 532 (694)
+.+|..+. ++|+.|++++|++..
T Consensus 819 -~~Ip~~l~--~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 819 -RKVDEKLT--PQLYILDIADNPNIS 841 (876)
T ss_dssp -CBCCSCCC--SSSCEEECCSCTTCE
T ss_pred -CccCHhhc--CCCCEEECCCCCCCc
Confidence 54555443 699999999999864
No 24
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.1e-38 Score=359.21 Aligned_cols=483 Identities=22% Similarity=0.250 Sum_probs=332.1
Q ss_pred eEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCc
Q psy3329 20 ITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCN 99 (694)
Q Consensus 20 ~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~ 99 (694)
.+.+.++.+++.||..+ .+++++|+|++|.|+.+.+.+|.++++|++|+|++|+++.+++++|.++++|++|+|++|+
T Consensus 34 ~~~~c~~~~l~~vP~~l--p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp TEEECTTSCCSSCCSSS--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred CEEECCCCCcCccCCCC--CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence 46788888999999654 3589999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCC-ccccCCCCCCcEEeCCCCCCCCcc
Q psy3329 100 LTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLP-DNVFANNTWLRNLNLAENELIDLD 178 (694)
Q Consensus 100 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~~~~L~~L~l~~n~l~~~~ 178 (694)
++++++.+|.++++|++|++++|.++.+.. ..++++++|++|++++|.++.+. +..+..+++|++|++++|.++++.
T Consensus 112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~--~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 189 (635)
T 4g8a_A 112 IQSLALGAFSGLSSLQKLVAVETNLASLEN--FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 189 (635)
T ss_dssp CCEECGGGGTTCTTCCEEECTTSCCCCSTT--CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred CCCCCHHHhcCCCCCCEEECCCCcCCCCCh--hhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccc
Confidence 999999999999999999999999986544 45899999999999999998764 467788999999999999998765
Q ss_pred hhhhc--ccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCC------
Q psy3329 179 VATTL--GQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGL------ 250 (694)
Q Consensus 179 ~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i------ 250 (694)
...+. .........++++.|.+ ..++...+ ....++.+++.+|..........+..+..++...+..+..
T Consensus 190 ~~~l~~L~~l~~~~~~~~ls~n~l-~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l 267 (635)
T 4g8a_A 190 CTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 267 (635)
T ss_dssp GGGGHHHHTCTTCCCEEECTTCCC-CEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCC
T ss_pred cccccchhhhhhhhhhhhcccCcc-cccCcccc-cchhhhhhhhhcccccccccchhhcCCccccccccccccccccccc
Confidence 44332 11122345788999988 44544433 3446778888887655333333344455555444322211
Q ss_pred CcCC---------------------------cccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccCh
Q psy3329 251 SRLP---------------------------ANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISR 303 (694)
Q Consensus 251 ~~~~---------------------------~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 303 (694)
.... ...+..+.+++.+.+.++.+..... +....+++.|++.+|.+..+..
T Consensus 268 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~ 345 (635)
T 4g8a_A 268 EKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPT 345 (635)
T ss_dssp SCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG--GGSCCCCSEEEEESCEESSCCC
T ss_pred ccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc--cccchhhhhhhcccccccCcCc
Confidence 0000 0112233445555555554433322 3334556666666665554432
Q ss_pred hhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccC--ccccccCCCCCCCCeeeCCCCCCcCCCCccc
Q psy3329 304 STFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLN--ETVFHENYTYPDLEELRLSGNPLHVLPDSTK 381 (694)
Q Consensus 304 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~--~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 381 (694)
..+..|+.+++.+|.+..... ...+++|+.|+++.|.+.... ...+. ...+|+.+++..+.+...+....
T Consensus 346 ---~~l~~L~~l~l~~n~~~~~~~--~~~l~~L~~L~ls~n~l~~~~~~~~~~~---~~~~L~~L~~~~~~~~~~~~~~~ 417 (635)
T 4g8a_A 346 ---LKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDF---GTISLKYLDLSFNGVITMSSNFL 417 (635)
T ss_dssp ---CBCTTCCEEEEESCCSCCBCC--CCBCTTCCEEECCSSCCBEEEECCHHHH---SCSCCCEEECCSCSEEEECSCCT
T ss_pred ---ccchhhhhcccccccCCCCcc--cccccccccchhhccccccccccccchh---hhhhhhhhhcccccccccccccc
Confidence 223444455555544433322 233445555555555443311 11111 33444444444443322111000
Q ss_pred -ccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcC-CccC
Q psy3329 382 -QYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKI-DYLP 459 (694)
Q Consensus 382 -~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~ 459 (694)
...+..+. +.............|.. ++.++.++++.|.+.+..+..+ ..+++|+.|+|++|.+ .+++
T Consensus 418 ~l~~L~~l~------l~~~~~~~~~~~~~~~~---l~~l~~l~ls~n~l~~~~~~~~--~~~~~L~~L~Ls~N~~~~~~~ 486 (635)
T 4g8a_A 418 GLEQLEHLD------FQHSNLKQMSEFSVFLS---LRNLIYLDISHTHTRVAFNGIF--NGLSSLEVLKMAGNSFQENFL 486 (635)
T ss_dssp TCTTCCEEE------CTTSEEESTTSSCTTTT---CTTCCEEECTTSCCEECCTTTT--TTCTTCCEEECTTCEEGGGEE
T ss_pred ccccccchh------hhhcccccccccccccc---cccccccccccccccccccccc--ccchhhhhhhhhhcccccccC
Confidence 00000000 00000000001112333 8899999999999999999888 8899999999999974 4578
Q ss_pred CCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEEEccCCcccc
Q psy3329 460 PNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKC 532 (694)
Q Consensus 460 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c 532 (694)
+..|..+++|++|+|++|++++++|..| .++++|++|+|++|+|+++++..+..+++|+.|++++|.+..
T Consensus 487 ~~~~~~l~~L~~L~Ls~N~L~~l~~~~f---~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~ 556 (635)
T 4g8a_A 487 PDIFTELRNLTFLDLSQCQLEQLSPTAF---NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 556 (635)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTTTT---TTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCB
T ss_pred chhhhhccccCEEECCCCccCCcChHHH---cCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCC
Confidence 8889999999999999999999999988 899999999999999999999999999999999999999865
No 25
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.9e-40 Score=355.43 Aligned_cols=384 Identities=22% Similarity=0.309 Sum_probs=305.3
Q ss_pred CcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEE
Q psy3329 188 VHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQEL 267 (694)
Q Consensus 188 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L 267 (694)
.+++.|++++|.+ ..++...|..+++|++|+|++|.++...+. .+..+++|+.|++++|.++.++...|..+++|+.|
T Consensus 32 ~~l~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 32 TETRLLDLGKNRI-KTLNQDEFASFPHLEELELNENIVSAVEPG-AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL 109 (477)
T ss_dssp TTCSEEECCSSCC-CEECTTTTTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEE
T ss_pred CCCcEEECCCCcc-ceECHhHccCCCCCCEEECCCCccCEeChh-hhhCCccCCEEECCCCcCCccCcccccCCCCCCEE
Confidence 3556666666666 334445678888899999988888876544 45788999999999999999888888899999999
Q ss_pred eCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCc
Q psy3329 268 DISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLT 347 (694)
Q Consensus 268 ~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 347 (694)
++++|.+.+..+..+..+++|++|++++|.+..+.+..|.++++|++|+|++|.++.+++..+..+++|+.|++++|.++
T Consensus 110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred ECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence 99999999888888999999999999999999988888999999999999999999999888999999999999999999
Q ss_pred ccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCC
Q psy3329 348 RLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGN 427 (694)
Q Consensus 348 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n 427 (694)
.++...|. .+++|+.|++++|++. +.+|... +. ..+|+.|++++|
T Consensus 190 ~~~~~~~~---~l~~L~~L~l~~~~~~-----------~~~~~~~-----------------~~----~~~L~~L~l~~n 234 (477)
T 2id5_A 190 AIRDYSFK---RLYRLKVLEISHWPYL-----------DTMTPNC-----------------LY----GLNLTSLSITHC 234 (477)
T ss_dssp EECTTCSC---SCTTCCEEEEECCTTC-----------CEECTTT-----------------TT----TCCCSEEEEESS
T ss_pred EeChhhcc---cCcccceeeCCCCccc-----------cccCccc-----------------cc----CccccEEECcCC
Confidence 98887777 7899999999998754 2233322 11 458999999999
Q ss_pred CCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCccc
Q psy3329 428 PLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLT 507 (694)
Q Consensus 428 ~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~ 507 (694)
.++.++...+ ..+++|+.|+|++|.++++++..|.++++|+.|+|++|+++++.+..| ..+++|+.|+|++|+++
T Consensus 235 ~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~N~l~ 309 (477)
T 2id5_A 235 NLTAVPYLAV--RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAF---RGLNYLRVLNVSGNQLT 309 (477)
T ss_dssp CCCSCCHHHH--TTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTB---TTCTTCCEEECCSSCCS
T ss_pred cccccCHHHh--cCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHh---cCcccCCEEECCCCcCc
Confidence 9998887667 889999999999999999999999999999999999999999999888 88999999999999999
Q ss_pred ccChhhhcCCCcccEEEccCCccccccCcHHHHHHHHhccCCCceeecCCCCccccccccC-----CCCceEEEeecccC
Q psy3329 508 HISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEWATREKGDIGVLVGSTTPTEIGFGASR-----KKKGLVCYFDIFTT 582 (694)
Q Consensus 508 ~~~~~~~~~~~~l~~l~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~c~~~~~~~ 582 (694)
++++..|..+++|+.+++++|||.|+|++.|+..|............|..|....|..... ....+.|..+....
T Consensus 310 ~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~~~~~~~~~C~~P~i~~ 389 (477)
T 2id5_A 310 TLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPEFVQGKEFKDFPDVLLPNYFTCRRARIRD 389 (477)
T ss_dssp CCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEESGGGTTCBGGGSCSSCCTTSSCCEEEEESC
T ss_pred eeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCchHHcCCchhhCccccccceeEeccccccc
Confidence 9999999999999999999999999999999887754322222334444555554433321 12345665443221
Q ss_pred CCCCCCCcccccccchhHHHHhhhcCCCCCcccCC
Q psy3329 583 PTRKRPGRELFASTNKTWARYVKEADCPSSKLFRP 617 (694)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (694)
. .........|......|.+.|.|.+.+.|.
T Consensus 390 ~----~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~ 420 (477)
T 2id5_A 390 R----KAQQVFVDEGHTVQFVCRADGDPPPAILWL 420 (477)
T ss_dssp C----SCEEEEEETTCCEEECCCEEEESCCEEEEE
T ss_pred c----ccccEEEeCCCeEEEEEeccccCCCEEEEE
Confidence 1 123334455666667777777777666553
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.6e-39 Score=359.14 Aligned_cols=440 Identities=20% Similarity=0.180 Sum_probs=348.5
Q ss_pred CCceEEECcCCCCcchh-hhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeC
Q psy3329 17 PGLITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLML 95 (694)
Q Consensus 17 ~~L~~L~Ls~~~l~~i~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L 95 (694)
+++++|++++|.++.++ ..|..+++|++|++++|.++++.|.+|.++++|++|++++|.++.++.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC---PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC---CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc---ccccCCEEEC
Confidence 79999999999999988 7999999999999999999999999999999999999999999988765 7999999999
Q ss_pred CCCcCCccC-hhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCC--CEEEccCCCC--CCCCccccCCCC-CCcEEeC
Q psy3329 96 NRCNLTYIS-PSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKL--DTLDLRQSGI--SNLPDNVFANNT-WLRNLNL 169 (694)
Q Consensus 96 ~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L--~~L~L~~n~i--~~~~~~~~~~~~-~L~~L~l 169 (694)
++|.++++. |..|+++++|++|++++|.+... .+..+++| ++|++++|.+ +...+..+..+. ..-.+++
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~-----~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l 203 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL-----DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF 203 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT-----TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEE
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccccC-----chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEe
Confidence 999999864 58899999999999999999752 34455666 9999999999 777776666654 1225677
Q ss_pred CCCCCCCcchhhhcccCCCcccEEeCCCCCCCC-C--CChhhhhcCCCCcEEEcCCCCCCccchhhh--ccCCCCccEEE
Q psy3329 170 AENELIDLDVATTLGQNLVHLDSLDLSNCHLKG-P--LSEDAFVNATKLRTLYLSGNPLSAADLSVA--LKPLTKLHRLS 244 (694)
Q Consensus 170 ~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~--~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~--l~~l~~L~~L~ 244 (694)
+.|.+...... .....+++|+.+++++|.... . .....+..+++|+.+++.++.+........ ....++|++|+
T Consensus 204 ~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~ 282 (562)
T 3a79_B 204 HPNSLFSVQVN-MSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLN 282 (562)
T ss_dssp CSSSCCCCCCE-EEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEE
T ss_pred cCccchhhhhh-hcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEE
Confidence 88877653222 222378899999999985210 0 011347788999999999887765432211 12345999999
Q ss_pred ccCcCCC-cCCcccc----cCCCCccEEeCCCCCCcccchhhcC---CCCCCcEEECcCCCCcccChhhhcCCCCCcEEe
Q psy3329 245 LRNCGLS-RLPANTF----HRFTCLQELDISHNPLIDAFTALLS---PLESLEHLDMGYSNLQRISRSTFLKMTSLKTLI 316 (694)
Q Consensus 245 l~~n~i~-~~~~~~~----~~~~~L~~L~L~~n~~~~~~~~~~~---~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 316 (694)
+++|.++ .++...+ ..++.|+.+++..+.+ ......+. ...+|++|++++|.+.... ....+++|++|+
T Consensus 283 l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ 359 (562)
T 3a79_B 283 IYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLN 359 (562)
T ss_dssp EEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEE
T ss_pred EeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEE
Confidence 9999998 4543332 6677777777777766 22212221 1257999999999987654 236889999999
Q ss_pred ccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCc--cccccCCCCCCCCeeeCCCCCCcC-CCCcccccccccccchhc
Q psy3329 317 LSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNE--TVFHENYTYPDLEELRLSGNPLHV-LPDSTKQYSMRTIPTQIW 393 (694)
Q Consensus 317 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~~~~~~ip~~~~ 393 (694)
+++|.+++..+..+..+++|+.|++++|++++++. ..+. .+++|+.|++++|+++. ++. ..
T Consensus 360 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~---~l~~L~~L~l~~N~l~~~~~~------------~~- 423 (562)
T 3a79_B 360 FTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK---NMSSLETLDVSLNSLNSHAYD------------RT- 423 (562)
T ss_dssp CCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTT---TCTTCCEEECTTSCCBSCCSS------------CC-
T ss_pred CCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhc---CCCCCCEEECCCCcCCCccCh------------hh-
Confidence 99999999888889999999999999999998764 3455 78999999999999975 432 11
Q ss_pred cccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEE
Q psy3329 394 KNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLN 473 (694)
Q Consensus 394 ~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 473 (694)
+.+ +++|+.|++++|.+++..+..+ . ++|+.|+|++|+|+.+++..+ ++++|+.|+
T Consensus 424 ----------------~~~---l~~L~~L~l~~n~l~~~~~~~l--~--~~L~~L~L~~N~l~~ip~~~~-~l~~L~~L~ 479 (562)
T 3a79_B 424 ----------------CAW---AESILVLNLSSNMLTGSVFRCL--P--PKVKVLDLHNNRIMSIPKDVT-HLQALQELN 479 (562)
T ss_dssp ----------------CCC---CTTCCEEECCSSCCCGGGGSSC--C--TTCSEEECCSSCCCCCCTTTT-SSCCCSEEE
T ss_pred ----------------hcC---cccCCEEECCCCCCCcchhhhh--c--CcCCEEECCCCcCcccChhhc-CCCCCCEEE
Confidence 233 7899999999999987666544 2 799999999999999888766 999999999
Q ss_pred ccCCccCCCcchhhhhhcccCCCcEEECCCCcccccCh
Q psy3329 474 LANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISP 511 (694)
Q Consensus 474 L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~ 511 (694)
|++|+++++++..+ ..+++|+.|++++|.+.+..+
T Consensus 480 L~~N~l~~l~~~~~---~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 480 VASNQLKSVPDGVF---DRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CCSSCCCCCCTTST---TTCTTCCCEECCSCCBCCCHH
T ss_pred CCCCCCCCCCHHHH---hcCCCCCEEEecCCCcCCCcc
Confidence 99999998766656 889999999999999998543
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.8e-38 Score=338.51 Aligned_cols=407 Identities=22% Similarity=0.234 Sum_probs=252.9
Q ss_pred CCCCCceEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCC-------------CeEECCCCCCCccC
Q psy3329 14 LDNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTL-------------NKLDLSGNPLRIIE 80 (694)
Q Consensus 14 ~~~~~L~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L-------------~~L~Ls~n~~~~~~ 80 (694)
...++|++|++++|.+..+|..++++++|++|++++|.+.+..|..++.+++| ++|++++|.+++++
T Consensus 8 ~~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp 87 (454)
T 1jl5_A 8 VSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLP 87 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred cccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence 35689999999999999999999999999999999999988888888888764 99999999999876
Q ss_pred CCCCCCCCCCCEEeCCCCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCC
Q psy3329 81 PGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFAN 160 (694)
Q Consensus 81 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~ 160 (694)
. + .++|++|++++|.++++ |. .+++|+.|++++|.++.++.++ ++|++|++++|.+++++ .++.
T Consensus 88 ~--~--~~~L~~L~l~~n~l~~l-p~---~~~~L~~L~l~~n~l~~l~~~~------~~L~~L~L~~n~l~~lp--~~~~ 151 (454)
T 1jl5_A 88 E--L--PPHLESLVASCNSLTEL-PE---LPQSLKSLLVDNNNLKALSDLP------PLLEYLGVSNNQLEKLP--ELQN 151 (454)
T ss_dssp S--C--CTTCSEEECCSSCCSSC-CC---CCTTCCEEECCSSCCSCCCSCC------TTCCEEECCSSCCSSCC--CCTT
T ss_pred C--C--cCCCCEEEccCCcCCcc-cc---ccCCCcEEECCCCccCcccCCC------CCCCEEECcCCCCCCCc--ccCC
Confidence 5 2 47899999999999986 43 2478999999999988654422 68999999999999877 4899
Q ss_pred CCCCcEEeCCCCCCCCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCc
Q psy3329 161 NTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKL 240 (694)
Q Consensus 161 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L 240 (694)
+++|++|++++|.+++++. ...+|++|++++|.+.+ ++ .+..+++|+.|++++|.++..+. ..++|
T Consensus 152 l~~L~~L~l~~N~l~~lp~------~~~~L~~L~L~~n~l~~-l~--~~~~l~~L~~L~l~~N~l~~l~~-----~~~~L 217 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKKLPD------LPPSLEFIAAGNNQLEE-LP--ELQNLPFLTAIYADNNSLKKLPD-----LPLSL 217 (454)
T ss_dssp CTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCSS-CC--CCTTCTTCCEEECCSSCCSSCCC-----CCTTC
T ss_pred CCCCCEEECCCCcCcccCC------CcccccEEECcCCcCCc-Cc--cccCCCCCCEEECCCCcCCcCCC-----CcCcc
Confidence 9999999999999886532 34589999999998844 55 37888889999998888876431 23588
Q ss_pred cEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCC
Q psy3329 241 HRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGN 320 (694)
Q Consensus 241 ~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 320 (694)
++|++++|.++.++ .+..+++|+.|++++|.+.+.. . .+++|++|++++|.+++++. .+++|+.|++++|
T Consensus 218 ~~L~l~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~l~-~---~~~~L~~L~l~~N~l~~l~~----~~~~L~~L~ls~N 287 (454)
T 1jl5_A 218 ESIVAGNNILEELP--ELQNLPFLTTIYADNNLLKTLP-D---LPPSLEALNVRDNYLTDLPE----LPQSLTFLDVSEN 287 (454)
T ss_dssp CEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCC-S---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSS
T ss_pred cEEECcCCcCCccc--ccCCCCCCCEEECCCCcCCccc-c---cccccCEEECCCCcccccCc----ccCcCCEEECcCC
Confidence 88888888888776 3778888888888888877632 2 24678888888888877653 2467888888888
Q ss_pred cccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhh
Q psy3329 321 KLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLV 400 (694)
Q Consensus 321 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~ 400 (694)
.+++++. ..++|+.|++++|.+++++. ..++|+.|++++|+++.++..
T Consensus 288 ~l~~l~~----~~~~L~~L~l~~N~l~~i~~-------~~~~L~~L~Ls~N~l~~lp~~--------------------- 335 (454)
T 1jl5_A 288 IFSGLSE----LPPNLYYLNASSNEIRSLCD-------LPPSLEELNVSNNKLIELPAL--------------------- 335 (454)
T ss_dssp CCSEESC----CCTTCCEEECCSSCCSEECC-------CCTTCCEEECCSSCCSCCCCC---------------------
T ss_pred ccCcccC----cCCcCCEEECcCCcCCcccC-------CcCcCCEEECCCCcccccccc---------------------
Confidence 8777542 12678888888887776442 124778888888877654420
Q ss_pred hhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccC--CCCCCCCCCCCEEEccCCc
Q psy3329 401 ILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLP--PNVFNNTRNITSLNLANNN 478 (694)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~N~ 478 (694)
+++|+.|++++|.++.++. . +++|+.|++++|.+++++ |..+ . +++.|+
T Consensus 336 ---------------~~~L~~L~L~~N~l~~lp~--~----l~~L~~L~L~~N~l~~l~~ip~~l------~--~L~~n~ 386 (454)
T 1jl5_A 336 ---------------PPRLERLIASFNHLAEVPE--L----PQNLKQLHVEYNPLREFPDIPESV------E--DLRMNS 386 (454)
T ss_dssp ---------------CTTCCEEECCSSCCSCCCC--C----CTTCCEEECCSSCCSSCCCCCTTC------C--EEECCC
T ss_pred ---------------CCcCCEEECCCCccccccc--h----hhhccEEECCCCCCCcCCCChHHH------H--hhhhcc
Confidence 5677778888887776554 2 467778888888777732 3222 2 234466
Q ss_pred cCCCcchhhhhhcccCCCcEEECCCCcccc--cChhhhcCCCcccEEEccCCccccc
Q psy3329 479 LSMTSELSFQFLDVLLELESLDLSNNNLTH--ISPTVLRHNRAITSIKLVGNPWKCD 533 (694)
Q Consensus 479 l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~--~~~~~~~~~~~l~~l~l~~N~~~c~ 533 (694)
+.+.+|. .+++|+.|++++|++++ .+|. +++.+.+.+|.+.|.
T Consensus 387 ~~~~i~~------~~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~ 431 (454)
T 1jl5_A 387 HLAEVPE------LPQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVDP 431 (454)
T ss_dssp ---------------------------------------------------------
T ss_pred ccccccc------ccCcCCEEECCCCcCCccccchh------hHhheeCcCcccCCc
Confidence 6665553 24789999999999998 4443 455677788877664
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.9e-37 Score=329.23 Aligned_cols=387 Identities=24% Similarity=0.247 Sum_probs=179.0
Q ss_pred cCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCC-------------CEEeCCCCcCCccC
Q psy3329 38 VARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSL-------------EYLMLNRCNLTYIS 104 (694)
Q Consensus 38 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L-------------~~L~L~~n~l~~~~ 104 (694)
..++|++|++++|.+..+ |..++++++|++|++++|.+.+..|..++.+.+| ++|++++|.+++++
T Consensus 9 ~~~~L~~L~l~~n~l~~i-P~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp 87 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTEM-PVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLP 87 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred ccccchhhhcccCchhhC-ChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence 356788888888888444 6678888888888888888776666667777665 66666666666652
Q ss_pred hhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCCcchhhhcc
Q psy3329 105 PSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLG 184 (694)
Q Consensus 105 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 184 (694)
. -.++|+.|++++|.++.++. .+++|++|++++|.+++++.. .++|++|++++|.+++++ . +
T Consensus 88 ~----~~~~L~~L~l~~n~l~~lp~------~~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~~lp--~-~- 149 (454)
T 1jl5_A 88 E----LPPHLESLVASCNSLTELPE------LPQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEKLP--E-L- 149 (454)
T ss_dssp S----CCTTCSEEECCSSCCSSCCC------CCTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCSSCC--C-C-
T ss_pred C----CcCCCCEEEccCCcCCcccc------ccCCCcEEECCCCccCcccCC----CCCCCEEECcCCCCCCCc--c-c-
Confidence 2 12456666666666654221 125566666666666554421 145666666666655543 1 1
Q ss_pred cCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCc
Q psy3329 185 QNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCL 264 (694)
Q Consensus 185 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L 264 (694)
..+++|++|++++|.+. .+|. ..++|++|++++|.++..+ .+..+++|+.|++++|.+++++.. .++|
T Consensus 150 ~~l~~L~~L~l~~N~l~-~lp~----~~~~L~~L~L~~n~l~~l~---~~~~l~~L~~L~l~~N~l~~l~~~----~~~L 217 (454)
T 1jl5_A 150 QNSSFLKIIDVDNNSLK-KLPD----LPPSLEFIAAGNNQLEELP---ELQNLPFLTAIYADNNSLKKLPDL----PLSL 217 (454)
T ss_dssp TTCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSSCC---CCTTCTTCCEEECCSSCCSSCCCC----CTTC
T ss_pred CCCCCCCEEECCCCcCc-ccCC----CcccccEEECcCCcCCcCc---cccCCCCCCEEECCCCcCCcCCCC----cCcc
Confidence 15556666666666553 2332 1235566666666555432 235555666666666655554421 1355
Q ss_pred cEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCC
Q psy3329 265 QELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNC 344 (694)
Q Consensus 265 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 344 (694)
+.|++++|.+.. +| .+..+++|++|++++|.+++++. .+++|+.|++++|++++++. .+++|+.|++++|
T Consensus 218 ~~L~l~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~N~l~~l~~----~~~~L~~L~ls~N 287 (454)
T 1jl5_A 218 ESIVAGNNILEE-LP-ELQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTDLPE----LPQSLTFLDVSEN 287 (454)
T ss_dssp CEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCS----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSS
T ss_pred cEEECcCCcCCc-cc-ccCCCCCCCEEECCCCcCCcccc----cccccCEEECCCCcccccCc----ccCcCCEEECcCC
Confidence 566666655552 33 25555556666666555555432 23555566666655555432 1255556666655
Q ss_pred CCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEc
Q psy3329 345 GLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRL 424 (694)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L 424 (694)
.+++++. -.++|+.|++++|+++.++. . .++|+.|++
T Consensus 288 ~l~~l~~-------~~~~L~~L~l~~N~l~~i~~-------------~-----------------------~~~L~~L~L 324 (454)
T 1jl5_A 288 IFSGLSE-------LPPNLYYLNASSNEIRSLCD-------------L-----------------------PPSLEELNV 324 (454)
T ss_dssp CCSEESC-------CCTTCCEEECCSSCCSEECC-------------C-----------------------CTTCCEEEC
T ss_pred ccCcccC-------cCCcCCEEECcCCcCCcccC-------------C-----------------------cCcCCEEEC
Confidence 5555432 12455555555555543221 0 235566666
Q ss_pred CCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCC--CcchhhhhhcccCCCcEEECC
Q psy3329 425 SGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSM--TSELSFQFLDVLLELESLDLS 502 (694)
Q Consensus 425 s~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~l~~L~~L~ls 502 (694)
++|.+++++. .+++|+.|++++|.+++++. .+++|++|++++|++++ .+|..+ . . ++
T Consensus 325 s~N~l~~lp~------~~~~L~~L~L~~N~l~~lp~----~l~~L~~L~L~~N~l~~l~~ip~~l---~------~--L~ 383 (454)
T 1jl5_A 325 SNNKLIELPA------LPPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLREFPDIPESV---E------D--LR 383 (454)
T ss_dssp CSSCCSCCCC------CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCCCCTTC---C------E--EE
T ss_pred CCCccccccc------cCCcCCEEECCCCccccccc----hhhhccEEECCCCCCCcCCCChHHH---H------h--hh
Confidence 6666555332 23556666666666655444 24556666666666655 233222 1 1 12
Q ss_pred CCcccccChhhhcCCCcccEEEccCCcccc
Q psy3329 503 NNNLTHISPTVLRHNRAITSIKLVGNPWKC 532 (694)
Q Consensus 503 ~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c 532 (694)
.|++.+.+|.. +++|+.+++++|++.+
T Consensus 384 ~n~~~~~i~~~---~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 384 MNSHLAEVPEL---PQNLKQLHVETNPLRE 410 (454)
T ss_dssp CCC---------------------------
T ss_pred hcccccccccc---cCcCCEEECCCCcCCc
Confidence 34444444432 3789999999999986
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4.9e-36 Score=323.03 Aligned_cols=300 Identities=28% Similarity=0.418 Sum_probs=163.0
Q ss_pred CCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCcCCccChhhhcCCCCCCEEE
Q psy3329 39 ARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLE 118 (694)
Q Consensus 39 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 118 (694)
+++++.|++.++.+..+. .+..+++|++|++++|.++.+++ +..+++|++|++++|.+.+..+ +.++++|++|+
T Consensus 45 l~~l~~L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 118 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118 (466)
T ss_dssp HHTCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred hccccEEecCCCCCccCc--chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence 445666666666555542 25556666666666666665544 5566666666666666665533 56666666666
Q ss_pred CCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCCcchhhhcccCCCcccEEeCCCC
Q psy3329 119 LSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNC 198 (694)
Q Consensus 119 l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n 198 (694)
+++|.+..... +.++++|++|++++|.+..++. +..+++|++|++. +.+..... + ..+++|+.|++++|
T Consensus 119 L~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~-~~~~~~~~---~-~~l~~L~~L~l~~n 187 (466)
T 1o6v_A 119 LFNNQITDIDP----LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFG-NQVTDLKP---L-ANLTTLERLDISSN 187 (466)
T ss_dssp CCSSCCCCCGG----GTTCTTCSEEEEEEEEECCCGG--GTTCTTCSEEEEE-ESCCCCGG---G-TTCTTCCEEECCSS
T ss_pred CCCCCCCCChH----HcCCCCCCEEECCCCccCCChh--hccCCcccEeecC-CcccCchh---h-ccCCCCCEEECcCC
Confidence 66666554321 5556666666666666655432 5556666666654 22222211 1 14455555555555
Q ss_pred CCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccc
Q psy3329 199 HLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAF 278 (694)
Q Consensus 199 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~ 278 (694)
.+ ..++ .+..+++|+.|++++|.+..... +..+++|+.|++++|.+++++ .+..+++|+.|++++|.+.+..
T Consensus 188 ~l-~~~~--~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~ 259 (466)
T 1o6v_A 188 KV-SDIS--VLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNLA 259 (466)
T ss_dssp CC-CCCG--GGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCG
T ss_pred cC-CCCh--hhccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccch--hhhcCCCCCEEECCCCccccch
Confidence 54 2222 25556666666666666554432 244566666666666665543 3555566666666666655544
Q ss_pred hhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCC
Q psy3329 279 TALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENY 358 (694)
Q Consensus 279 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 358 (694)
+ +..+++|++|++++|.++.+.+ +..+++|+.|++++|++.++.+ +..+++|+.|++++|+++++++ +.
T Consensus 260 ~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~--- 328 (466)
T 1o6v_A 260 P--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VS--- 328 (466)
T ss_dssp G--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GG---
T ss_pred h--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hc---
Confidence 3 4555566666666665555543 5555566666666665555444 4555555555555555555433 22
Q ss_pred CCCCCCeeeCCCCCCc
Q psy3329 359 TYPDLEELRLSGNPLH 374 (694)
Q Consensus 359 ~~~~L~~L~Ls~n~l~ 374 (694)
.+++|+.|++++|+++
T Consensus 329 ~l~~L~~L~l~~n~l~ 344 (466)
T 1o6v_A 329 SLTKLQRLFFYNNKVS 344 (466)
T ss_dssp GCTTCCEEECCSSCCC
T ss_pred cCccCCEeECCCCccC
Confidence 3444444444444443
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.2e-36 Score=325.59 Aligned_cols=354 Identities=24% Similarity=0.322 Sum_probs=306.1
Q ss_pred CCceEEECcCCCCcch-hhhhhcCCCCcEEEccCCcCC-ccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEe
Q psy3329 17 PGLITINLNANPIQPV-EGAFLVARSLLYLYMQECTLS-KINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLM 94 (694)
Q Consensus 17 ~~L~~L~Ls~~~l~~i-~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~ 94 (694)
++|++|+|++|.++.+ |..|..+++|++|++++|.+. .+.+..|.++++|++|++++|.++.+.+..|.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 7899999999999987 588999999999999999886 56678899999999999999999999888899999999999
Q ss_pred CCCCcCCccChhh--hcCCCCCCEEECCCCcCCccchhhh-hhcCCCCCCEEEccCCCCCCCCccccCCC--CCCcEEeC
Q psy3329 95 LNRCNLTYISPSA--FDNLNHLKTLELSQNKLKSHIDWTL-VLGNLGKLDTLDLRQSGISNLPDNVFANN--TWLRNLNL 169 (694)
Q Consensus 95 L~~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~~-~~~~l~~L~~L~L~~n~i~~~~~~~~~~~--~~L~~L~l 169 (694)
+++|.+++..+.. +.++++|++|++++|.+..... . .+.++++|++|++++|.+..+.+..+..+ .+|+.|++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP--ASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCC--CGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCc--ccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence 9999999854544 8999999999999999986432 3 37889999999999999999888777765 78999999
Q ss_pred CCCCCCCcchhhhc------ccCCCcccEEeCCCCCCCCCCChhhhhc---CCCCcEEEcCCCCCCccchhh--------
Q psy3329 170 AENELIDLDVATTL------GQNLVHLDSLDLSNCHLKGPLSEDAFVN---ATKLRTLYLSGNPLSAADLSV-------- 232 (694)
Q Consensus 170 ~~n~l~~~~~~~~~------~~~~~~L~~L~l~~n~~~~~~~~~~~~~---~~~L~~L~L~~n~l~~~~~~~-------- 232 (694)
++|.+......... ...+++|++|++++|.+.+..+.. +.. .++|+.|++++|.........
T Consensus 188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 266 (455)
T 3v47_A 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKR-FFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN 266 (455)
T ss_dssp TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHH-HHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCT
T ss_pred ccCcccccchhhccccccccccccceeeeEecCCCcccccchhh-hhccccccceeeEeeccccccccccchhhhccCcc
Confidence 99998876543211 114578999999999986555433 333 389999999988654322110
Q ss_pred -hc--cCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCC
Q psy3329 233 -AL--KPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKM 309 (694)
Q Consensus 233 -~l--~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 309 (694)
.+ ...++|+.|++++|.+.++.+..+..+++|+.|++++|.+.+..+..+..+++|++|+|++|.++++.+..|.++
T Consensus 267 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 346 (455)
T 3v47_A 267 FTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENL 346 (455)
T ss_dssp TTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTC
T ss_pred cccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCc
Confidence 01 123689999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCC
Q psy3329 310 TSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVL 376 (694)
Q Consensus 310 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 376 (694)
++|++|+|++|+++++.+..|..+++|++|++++|+++.++...+. .+++|+.|++++|+++..
T Consensus 347 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~---~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 347 DKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFD---RLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTT---TCTTCCEEECCSSCBCCC
T ss_pred ccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhc---cCCcccEEEccCCCcccC
Confidence 9999999999999999898999999999999999999999988877 889999999999999753
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.9e-35 Score=318.40 Aligned_cols=347 Identities=24% Similarity=0.357 Sum_probs=220.5
Q ss_pred CCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCC
Q psy3329 62 NLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLD 141 (694)
Q Consensus 62 ~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~ 141 (694)
.+++|+.|+++++.+..++. +..+++|++|++++|.++++.+ +.++++|++|++++|.+..... +.++++|+
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~ 115 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP----LANLTNLT 115 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG----GTTCTTCC
T ss_pred HhccccEEecCCCCCccCcc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh----hcCCCCCC
Confidence 46788899999888887653 7788899999999998888854 8888899999998888875432 77888888
Q ss_pred EEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcC
Q psy3329 142 TLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLS 221 (694)
Q Consensus 142 ~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~ 221 (694)
+|++++|.+..+++ +..+++|++|++++|.+.+++. +..+++|+.|+++
T Consensus 116 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-----------------------------~~~l~~L~~L~l~ 164 (466)
T 1o6v_A 116 GLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISA-----------------------------LSGLTSLQQLSFG 164 (466)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGG-----------------------------GTTCTTCSEEEEE
T ss_pred EEECCCCCCCCChH--HcCCCCCCEEECCCCccCCChh-----------------------------hccCCcccEeecC
Confidence 88888888887764 6777777777777776554321 3344444444443
Q ss_pred CCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCccc
Q psy3329 222 GNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRI 301 (694)
Q Consensus 222 ~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 301 (694)
+ .+.... .+..+++|+.|++++|.++.++ .+..+++|+.|++++|.+.+..+ +..+++|++|++++|.++.+
T Consensus 165 ~-~~~~~~---~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~ 236 (466)
T 1o6v_A 165 N-QVTDLK---PLANLTTLERLDISSNKVSDIS--VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI 236 (466)
T ss_dssp E-SCCCCG---GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred C-cccCch---hhccCCCCCEEECcCCcCCCCh--hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc
Confidence 2 222211 1344555555555555555443 24555566666666665555443 44455666666666666554
Q ss_pred ChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCccc
Q psy3329 302 SRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTK 381 (694)
Q Consensus 302 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 381 (694)
. .+..+++|+.|++++|.+.++.+ +..+++|+.|++++|.++++++ +. .+++|+.|++++|+++.++.
T Consensus 237 ~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~---~l~~L~~L~L~~n~l~~~~~--- 304 (466)
T 1o6v_A 237 G--TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LA---GLTALTNLELNENQLEDISP--- 304 (466)
T ss_dssp G--GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GT---TCTTCSEEECCSSCCSCCGG---
T ss_pred h--hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--cc---CCCccCeEEcCCCcccCchh---
Confidence 2 45566666666666666666554 5666666666666666666544 22 45666666666665543321
Q ss_pred ccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCC
Q psy3329 382 QYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPN 461 (694)
Q Consensus 382 ~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 461 (694)
+.. +++|+.|++++|.++++++ + ..+++|+.|++++|.+++++
T Consensus 305 ----------------------------~~~---l~~L~~L~L~~n~l~~~~~--~--~~l~~L~~L~l~~n~l~~~~-- 347 (466)
T 1o6v_A 305 ----------------------------ISN---LKNLTYLTLYFNNISDISP--V--SSLTKLQRLFFYNNKVSDVS-- 347 (466)
T ss_dssp ----------------------------GGG---CTTCSEEECCSSCCSCCGG--G--GGCTTCCEEECCSSCCCCCG--
T ss_pred ----------------------------hcC---CCCCCEEECcCCcCCCchh--h--ccCccCCEeECCCCccCCch--
Confidence 111 5666666666666666554 3 55666777777777666652
Q ss_pred CCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCccccc
Q psy3329 462 VFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHI 509 (694)
Q Consensus 462 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~ 509 (694)
.+..+++|+.|++++|++++..| + ..+++|+.|++++|.+++.
T Consensus 348 ~l~~l~~L~~L~l~~n~l~~~~~--~---~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 348 SLANLTNINWLSAGHNQISDLTP--L---ANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp GGTTCTTCCEEECCSSCCCBCGG--G---TTCTTCCEEECCCEEEECC
T ss_pred hhccCCCCCEEeCCCCccCccch--h---hcCCCCCEEeccCCcccCC
Confidence 35666677777777777666655 3 5666666777776666664
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.6e-35 Score=314.43 Aligned_cols=357 Identities=22% Similarity=0.257 Sum_probs=194.3
Q ss_pred hhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCcCCccChhhhcCCCCC
Q psy3329 35 AFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHL 114 (694)
Q Consensus 35 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 114 (694)
.+..+++|++|++++|.++++ | .+..+++|++|++++|.+++++ ++.+++|++|++++|.++++. ++++++|
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L 108 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD---VTPLTKL 108 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC---CTTCTTC
T ss_pred ChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee---cCCCCcC
Confidence 344555666666666665554 2 3555666666666666655542 555566666666666655541 5555566
Q ss_pred CEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCCcchhhhcccCCCcccEEe
Q psy3329 115 KTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLD 194 (694)
Q Consensus 115 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ 194 (694)
++|++++|.++.+ + ++++++|++|++++|.+++++ +..+++|++|++++|
T Consensus 109 ~~L~L~~N~l~~l---~--~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n---------------------- 158 (457)
T 3bz5_A 109 TYLNCDTNKLTKL---D--VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLN---------------------- 158 (457)
T ss_dssp CEEECCSSCCSCC---C--CTTCTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTC----------------------
T ss_pred CEEECCCCcCCee---c--CCCCCcCCEEECCCCccceec---cccCCcCCEEECCCC----------------------
Confidence 6666666655532 1 455555555555555555542 444555555555554
Q ss_pred CCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCC
Q psy3329 195 LSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPL 274 (694)
Q Consensus 195 l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~ 274 (694)
...+.++ +..+++|+.|++++|.++..+ +..+++|+.|++++|.+++++ +..+++|+.|++++|++
T Consensus 159 ----~~~~~~~---~~~l~~L~~L~ls~n~l~~l~----l~~l~~L~~L~l~~N~l~~~~---l~~l~~L~~L~Ls~N~l 224 (457)
T 3bz5_A 159 ----KKITKLD---VTPQTQLTTLDCSFNKITELD----VSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKL 224 (457)
T ss_dssp ----SCCCCCC---CTTCTTCCEEECCSSCCCCCC----CTTCTTCCEEECCSSCCSCCC---CTTCTTCSEEECCSSCC
T ss_pred ----Ccccccc---cccCCcCCEEECCCCccceec----cccCCCCCEEECcCCcCCeec---cccCCCCCEEECcCCcc
Confidence 3223331 344455555555555554432 244455555555555555542 44455555555555555
Q ss_pred cccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCcccc
Q psy3329 275 IDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVF 354 (694)
Q Consensus 275 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 354 (694)
.+. | +..+++|++|++++|.+++++ +..+++|+.|++++| +|+.|++++|.+.+..+ +
T Consensus 225 ~~i-p--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~ 282 (457)
T 3bz5_A 225 TEI-D--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--A 282 (457)
T ss_dssp SCC-C--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--C
T ss_pred ccc-C--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--c
Confidence 552 2 445555555555555555543 233444555544433 23334444443322111 1
Q ss_pred ccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCC
Q psy3329 355 HENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPT 434 (694)
Q Consensus 355 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 434 (694)
. .+++|+.|++++|+..+ .+|... .. +..-.+.+ +++|+.|++++|++++++
T Consensus 283 ~---~l~~L~~L~Ls~n~~l~-----------~l~~~~-~~---------L~~L~l~~---~~~L~~L~L~~N~l~~l~- 334 (457)
T 3bz5_A 283 E---GCRKIKELDVTHNTQLY-----------LLDCQA-AG---------ITELDLSQ---NPKLVYLYLNNTELTELD- 334 (457)
T ss_dssp T---TCTTCCCCCCTTCTTCC-----------EEECTT-CC---------CSCCCCTT---CTTCCEEECTTCCCSCCC-
T ss_pred c---ccccCCEEECCCCcccc-----------eeccCC-Cc---------ceEechhh---cccCCEEECCCCcccccc-
Confidence 1 34555555555554321 111100 00 00000112 678888999999998863
Q ss_pred CCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccChhh
Q psy3329 435 GNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTV 513 (694)
Q Consensus 435 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~ 513 (694)
+ ..+++|+.|++++|+|+++ +.|..|++++|.++|. ..+..|..+++++|+++|.+|..
T Consensus 335 --l--~~l~~L~~L~l~~N~l~~l--------~~L~~L~l~~n~l~g~--------~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 335 --V--SHNTKLKSLSCVNAHIQDF--------SSVGKIPALNNNFEAE--------GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp --C--TTCTTCSEEECCSSCCCBC--------TTGGGSSGGGTSEEEE--------EEEEECCCBCCBTTBEEEECCTT
T ss_pred --c--ccCCcCcEEECCCCCCCCc--------cccccccccCCcEEec--------ceeeecCccccccCcEEEEcChh
Confidence 4 7788999999999988874 4567778888888875 23456788899999999976653
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.7e-35 Score=314.24 Aligned_cols=266 Identities=21% Similarity=0.234 Sum_probs=218.6
Q ss_pred CcccCCCCCceEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCC
Q psy3329 10 DRRNLDNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTS 89 (694)
Q Consensus 10 ~~~~~~~~~L~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~ 89 (694)
...+.++++|++|++++|.++.+| .+..+++|++|++++|.++++. +..+++|++|++++|.+++++ ++.+++
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~---~~~l~~ 107 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD---VTPLTK 107 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC---CTTCTT
T ss_pred ccChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee---cCCCCc
Confidence 346778999999999999999997 6899999999999999999973 889999999999999999873 889999
Q ss_pred CCEEeCCCCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCC-CCCCCccccCCCCCCcEEe
Q psy3329 90 LEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSG-ISNLPDNVFANNTWLRNLN 168 (694)
Q Consensus 90 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~~~~L~~L~ 168 (694)
|++|++++|.++++ + ++.+++|++|++++|.++.+ .++++++|++|++++|. +..+ .+..+++|++|+
T Consensus 108 L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-----~l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ 176 (457)
T 3bz5_A 108 LTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-----DVSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLD 176 (457)
T ss_dssp CCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-----CCTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEE
T ss_pred CCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee-----ccccCCcCCEEECCCCCccccc---ccccCCcCCEEE
Confidence 99999999999997 3 88999999999999999864 27889999999999995 4444 378899999999
Q ss_pred CCCCCCCCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCc
Q psy3329 169 LAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNC 248 (694)
Q Consensus 169 l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n 248 (694)
+++|.+++++ + ..+++|+.|++++|.+.+ + .+..+++|+.|++++|++++.+ +..+++|+.|++++|
T Consensus 177 ls~n~l~~l~----l-~~l~~L~~L~l~~N~l~~-~---~l~~l~~L~~L~Ls~N~l~~ip----~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 177 CSFNKITELD----V-SQNKLLNRLNCDTNNITK-L---DLNQNIQLTFLDCSSNKLTEID----VTPLTQLTYFDCSVN 243 (457)
T ss_dssp CCSSCCCCCC----C-TTCTTCCEEECCSSCCSC-C---CCTTCTTCSEEECCSSCCSCCC----CTTCTTCSEEECCSS
T ss_pred CCCCccceec----c-ccCCCCCEEECcCCcCCe-e---ccccCCCCCEEECcCCcccccC----ccccCCCCEEEeeCC
Confidence 9999998865 2 278899999999999854 3 2778899999999999998854 578899999999999
Q ss_pred CCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCc
Q psy3329 249 GLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETL 325 (694)
Q Consensus 249 ~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 325 (694)
.+++++ +..+++|+.|+++.| +|+.|++++|.+.+..+ +..+++|+.|++++|...+.
T Consensus 244 ~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~ 301 (457)
T 3bz5_A 244 PLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYL 301 (457)
T ss_dssp CCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCE
T ss_pred cCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccce
Confidence 999886 345667777777665 34556666665443332 45667777777777764433
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=9.9e-35 Score=314.39 Aligned_cols=321 Identities=24% Similarity=0.345 Sum_probs=227.3
Q ss_pred ceEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCC
Q psy3329 19 LITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRC 98 (694)
Q Consensus 19 L~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n 98 (694)
-+.++++++.++.+|..+ .+++++|++++|.++.+.+..|.++++|++|+|++|.++.+.+..|.++++|++|+|++|
T Consensus 13 ~~~v~c~~~~l~~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TTEEECCSCCCSSCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 357899999999998644 468999999999999998889999999999999999999998888999999999999999
Q ss_pred cCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCCcc
Q psy3329 99 NLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLD 178 (694)
Q Consensus 99 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 178 (694)
.++.+++..|.++++|++|++++|.+.... +..+.++++|++|++++|.+..+.+..|..+++|++|++++|.++.++
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILL--DYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCC--hhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence 999988888899999999999999887543 356788899999999999888887777877777777777777665543
Q ss_pred hhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCC-cCCccc
Q psy3329 179 VATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLS-RLPANT 257 (694)
Q Consensus 179 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~-~~~~~~ 257 (694)
. ..+..+++|+.|++++|.+...... .+..+++|+.|++++|.+. .++..
T Consensus 169 ~---------------------------~~l~~l~~L~~L~l~~n~i~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~- 219 (477)
T 2id5_A 169 T---------------------------EALSHLHGLIVLRLRHLNINAIRDY-SFKRLYRLKVLEISHWPYLDTMTPN- 219 (477)
T ss_dssp H---------------------------HHHTTCTTCCEEEEESCCCCEECTT-CSCSCTTCCEEEEECCTTCCEECTT-
T ss_pred h---------------------------hHhcccCCCcEEeCCCCcCcEeChh-hcccCcccceeeCCCCccccccCcc-
Confidence 3 3344444555555555544443322 2344555555555554332 22222
Q ss_pred ccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCC
Q psy3329 258 FHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLS 337 (694)
Q Consensus 258 ~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 337 (694)
.....+|+.|++++|.+.+..+..+..+++|++|+|++|.++.+.+..|.++++|+.|+|++|++.++.+..|..+++|+
T Consensus 220 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 299 (477)
T 2id5_A 220 CLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLR 299 (477)
T ss_dssp TTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCC
T ss_pred cccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCC
Confidence 22233566666666666555555566666666666666666666666666666666666666666666666666666666
Q ss_pred EEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcC
Q psy3329 338 VLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHV 375 (694)
Q Consensus 338 ~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 375 (694)
.|++++|.++.++...|. .+++|+.|++++|++..
T Consensus 300 ~L~L~~N~l~~~~~~~~~---~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 300 VLNVSGNQLTTLEESVFH---SVGNLETLILDSNPLAC 334 (477)
T ss_dssp EEECCSSCCSCCCGGGBS---CGGGCCEEECCSSCEEC
T ss_pred EEECCCCcCceeCHhHcC---CCcccCEEEccCCCccC
Confidence 666666666666666655 56667777777776653
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=6.4e-34 Score=299.46 Aligned_cols=322 Identities=23% Similarity=0.290 Sum_probs=247.9
Q ss_pred CCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCc
Q psy3329 137 LGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLR 216 (694)
Q Consensus 137 l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 216 (694)
+++++.|+++++.+..++...+..+++|++|++++|.+.+ ++...|..+++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~---------------------------~~~~~~~~l~~L~ 96 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE---------------------------IDTYAFAYAHTIQ 96 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCE---------------------------ECTTTTTTCTTCC
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccc---------------------------cChhhccCCCCcC
Confidence 4566677777666666666555556666666665555443 2333466667777
Q ss_pred EEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCC
Q psy3329 217 TLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYS 296 (694)
Q Consensus 217 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n 296 (694)
+|++++|.++..... .+..+++|++|++++|.++.++...|..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 97 ~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 175 (390)
T 3o6n_A 97 KLYMGFNAIRYLPPH-VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 175 (390)
T ss_dssp EEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS
T ss_pred EEECCCCCCCcCCHH-HhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC
Confidence 777777776665443 3467777888888888888777766777888888888888888777777888888888888888
Q ss_pred CCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCC
Q psy3329 297 NLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVL 376 (694)
Q Consensus 297 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 376 (694)
.++.+. +..+++|+.|++++|.+..+. ..++|+.|++++|.++.++.. ..++|+.|++++|.++..
T Consensus 176 ~l~~~~---~~~l~~L~~L~l~~n~l~~~~-----~~~~L~~L~l~~n~l~~~~~~------~~~~L~~L~l~~n~l~~~ 241 (390)
T 3o6n_A 176 RLTHVD---LSLIPSLFHANVSYNLLSTLA-----IPIAVEELDASHNSINVVRGP------VNVELTILKLQHNNLTDT 241 (390)
T ss_dssp CCSBCC---GGGCTTCSEEECCSSCCSEEE-----CCSSCSEEECCSSCCCEEECC------CCSSCCEEECCSSCCCCC
T ss_pred cCCccc---cccccccceeecccccccccC-----CCCcceEEECCCCeeeecccc------ccccccEEECCCCCCccc
Confidence 887764 456788888888888877643 346889999999988877543 347899999999988753
Q ss_pred CCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCC
Q psy3329 377 PDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKID 456 (694)
Q Consensus 377 ~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 456 (694)
+. +.. +++|++|++++|.++++.+..+ ..+++|+.|+|++|+++
T Consensus 242 ~~-------------------------------l~~---l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~ 285 (390)
T 3o6n_A 242 AW-------------------------------LLN---YPGLVEVDLSYNELEKIMYHPF--VKMQRLERLYISNNRLV 285 (390)
T ss_dssp GG-------------------------------GGG---CTTCSEEECCSSCCCEEESGGG--TTCSSCCEEECCSSCCC
T ss_pred HH-------------------------------HcC---CCCccEEECCCCcCCCcChhHc--cccccCCEEECCCCcCc
Confidence 21 222 8899999999999999988888 88999999999999999
Q ss_pred ccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEEEccCCccccccCc
Q psy3329 457 YLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNI 536 (694)
Q Consensus 457 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~~ 536 (694)
+++.. +..+++|++|+|++|+++++++ .+ ..+++|+.|++++|+++.+. +..+++|+.+++++|+|.|+|..
T Consensus 286 ~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~---~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~~~~ 357 (390)
T 3o6n_A 286 ALNLY-GQPIPTLKVLDLSHNHLLHVER-NQ---PQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR 357 (390)
T ss_dssp EEECS-SSCCTTCCEEECCSSCCCCCGG-GH---HHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH
T ss_pred ccCcc-cCCCCCCCEEECCCCcceecCc-cc---cccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccchhHH
Confidence 97654 4789999999999999997654 34 77899999999999999875 56678999999999999999877
Q ss_pred HHHHHHHH
Q psy3329 537 ADMWEWAT 544 (694)
Q Consensus 537 ~~~~~~~~ 544 (694)
.++..|.+
T Consensus 358 ~~~~~~~~ 365 (390)
T 3o6n_A 358 ALFRNVAR 365 (390)
T ss_dssp HHTTTCCT
T ss_pred HHHHHHHh
Confidence 66655543
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.4e-32 Score=284.69 Aligned_cols=305 Identities=24% Similarity=0.344 Sum_probs=190.9
Q ss_pred cCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCcCCccChhhhcCCCCCCEE
Q psy3329 38 VARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTL 117 (694)
Q Consensus 38 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 117 (694)
.+++|++|+++++.+..+. .+..+++|++|++++|.++.+++ +..+++|++|++++|.++.+ ..+.++++|++|
T Consensus 42 ~l~~L~~L~l~~~~i~~~~--~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L 115 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL 115 (347)
T ss_dssp HHTTCSEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred hcccccEEEEeCCccccch--hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence 4455555555555554442 24455555555555555554433 45555555555555555554 235555555555
Q ss_pred ECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCCcchhhhcccCCCcccEEeCCC
Q psy3329 118 ELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSN 197 (694)
Q Consensus 118 ~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~ 197 (694)
++++|.+..... +..+++|+.|++++|......+ .+..+++|++|++++|.+..... . ..+++|++|++++
T Consensus 116 ~l~~n~i~~~~~----~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~---~-~~l~~L~~L~l~~ 186 (347)
T 4fmz_A 116 YLNEDNISDISP----LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP---I-ANLTDLYSLSLNY 186 (347)
T ss_dssp ECTTSCCCCCGG----GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG---G-GGCTTCSEEECTT
T ss_pred ECcCCcccCchh----hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh---h-ccCCCCCEEEccC
Confidence 555555543221 4455555555555553332222 15555556666666555554433 1 1456666666666
Q ss_pred CCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCccc
Q psy3329 198 CHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDA 277 (694)
Q Consensus 198 n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~ 277 (694)
|.+ ..++. +..+++|+.|++++|.+..... +..+++|++|++++|.++.+++ +..+++|+.|++++|.+.+.
T Consensus 187 n~l-~~~~~--~~~l~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~ 258 (347)
T 4fmz_A 187 NQI-EDISP--LASLTSLHYFTAYVNQITDITP---VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI 258 (347)
T ss_dssp SCC-CCCGG--GGGCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred Ccc-ccccc--ccCCCccceeecccCCCCCCch---hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC
Confidence 666 33332 6667777777777777766543 4667777778887777777664 67777888888888877664
Q ss_pred chhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccC
Q psy3329 278 FTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHEN 357 (694)
Q Consensus 278 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 357 (694)
..+..+++|++|++++|.++.+. .+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++++++ +.
T Consensus 259 --~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~-- 330 (347)
T 4fmz_A 259 --NAVKDLTKLKMLNVGSNQISDIS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LA-- 330 (347)
T ss_dssp --GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GG--
T ss_pred --hhHhcCCCcCEEEccCCccCCCh--hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hh--
Confidence 34677788888888888887763 57778888888888888888777778888888888888888887665 33
Q ss_pred CCCCCCCeeeCCCCCCc
Q psy3329 358 YTYPDLEELRLSGNPLH 374 (694)
Q Consensus 358 ~~~~~L~~L~Ls~n~l~ 374 (694)
.+++|+.|++++|+++
T Consensus 331 -~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 331 -SLSKMDSADFANQVIK 346 (347)
T ss_dssp -GCTTCSEESSSCC---
T ss_pred -hhhccceeehhhhccc
Confidence 6788888888888775
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=7e-33 Score=291.53 Aligned_cols=310 Identities=23% Similarity=0.288 Sum_probs=229.8
Q ss_pred cCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCcCCccChhhhcCCCCCCEE
Q psy3329 38 VARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTL 117 (694)
Q Consensus 38 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 117 (694)
.++++++|++++|.+..+++..|..+++|++|++++|.++.+++..|..+++|++|++++|.++++.+..|.++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 35667777777777777766666777777777777777777766667777777777777777777766667777777777
Q ss_pred ECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCCcchhhhcccCCCcccEEeCCC
Q psy3329 118 ELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSN 197 (694)
Q Consensus 118 ~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~ 197 (694)
++++|.+..+.. ..+.++++|++|++++|.+..+++..+..+++|++|++++|.++..+.. .+++|+.|++++
T Consensus 123 ~L~~n~l~~l~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-----~l~~L~~L~l~~ 195 (390)
T 3o6n_A 123 VLERNDLSSLPR--GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS-----LIPSLFHANVSY 195 (390)
T ss_dssp ECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGG-----GCTTCSEEECCS
T ss_pred ECCCCccCcCCH--HHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccc-----cccccceeeccc
Confidence 777777664332 2356677777777777777777766677777777777777777665321 567777788777
Q ss_pred CCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCccc
Q psy3329 198 CHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDA 277 (694)
Q Consensus 198 n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~ 277 (694)
|.+.+ +...++|+.|++++|.+...+. ...++|+.|++++|.+++.+ .+..+++|+.|++++|.+.+.
T Consensus 196 n~l~~------~~~~~~L~~L~l~~n~l~~~~~----~~~~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~ 263 (390)
T 3o6n_A 196 NLLST------LAIPIAVEELDASHNSINVVRG----PVNVELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKI 263 (390)
T ss_dssp SCCSE------EECCSSCSEEECCSSCCCEEEC----CCCSSCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCEE
T ss_pred ccccc------cCCCCcceEEECCCCeeeeccc----cccccccEEECCCCCCcccH--HHcCCCCccEEECCCCcCCCc
Confidence 76631 3345678888888888776643 33478888888888888763 577888899999999988888
Q ss_pred chhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccC
Q psy3329 278 FTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHEN 357 (694)
Q Consensus 278 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 357 (694)
.+..+..+++|++|+|++|.++.++. .+..+++|+.|++++|++..+++. +..+++|+.|++++|.++.++ +.
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~L~~N~i~~~~---~~-- 336 (390)
T 3o6n_A 264 MYHPFVKMQRLERLYISNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVERN-QPQFDRLENLYLDHNSIVTLK---LS-- 336 (390)
T ss_dssp ESGGGTTCSSCCEEECCSSCCCEEEC-SSSCCTTCCEEECCSSCCCCCGGG-HHHHTTCSEEECCSSCCCCCC---CC--
T ss_pred ChhHccccccCCEEECCCCcCcccCc-ccCCCCCCCEEECCCCcceecCcc-ccccCcCCEEECCCCccceeC---ch--
Confidence 88888888899999999988887653 456788899999999988877654 567888999999999888875 22
Q ss_pred CCCCCCCeeeCCCCCCc
Q psy3329 358 YTYPDLEELRLSGNPLH 374 (694)
Q Consensus 358 ~~~~~L~~L~Ls~n~l~ 374 (694)
.+++|+.|++++|++.
T Consensus 337 -~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 337 -THHTLKNLTLSHNDWD 352 (390)
T ss_dssp -TTCCCSEEECCSSCEE
T ss_pred -hhccCCEEEcCCCCcc
Confidence 6788999999999875
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=8.1e-32 Score=278.86 Aligned_cols=309 Identities=23% Similarity=0.344 Sum_probs=272.0
Q ss_pred cccCCCCCceEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCC
Q psy3329 11 RRNLDNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSL 90 (694)
Q Consensus 11 ~~~~~~~~L~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L 90 (694)
..+.++++|++|+++++.+..++. +..+++|++|++++|.++.+.+ +..+++|++|++++|.++.++ .+..+++|
T Consensus 38 ~~~~~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~--~~~~l~~L 112 (347)
T 4fmz_A 38 VTQEELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS--ALQNLTNL 112 (347)
T ss_dssp ECHHHHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTC
T ss_pred ccchhcccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch--HHcCCCcC
Confidence 455688999999999999999875 8889999999999999998855 899999999999999999874 48999999
Q ss_pred CEEeCCCCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCC
Q psy3329 91 EYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLA 170 (694)
Q Consensus 91 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~ 170 (694)
++|++++|.+.++.+ +..+++|+.|++++|..... + ..+..+++|++|++++|.+..+++ +..+++|++|+++
T Consensus 113 ~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~--~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~ 185 (347)
T 4fmz_A 113 RELYLNEDNISDISP--LANLTKMYSLNLGANHNLSD--L-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLN 185 (347)
T ss_dssp SEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCC--C-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECT
T ss_pred CEEECcCCcccCchh--hccCCceeEEECCCCCCccc--c-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEcc
Confidence 999999999999854 89999999999999955432 2 348899999999999999988876 8899999999999
Q ss_pred CCCCCCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCC
Q psy3329 171 ENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGL 250 (694)
Q Consensus 171 ~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i 250 (694)
+|.+.++.. + ..+++|+.+++++|.+. .++. +..+++|+.|++++|.++.... +..+++|++|++++|.+
T Consensus 186 ~n~l~~~~~--~--~~l~~L~~L~l~~n~l~-~~~~--~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l 255 (347)
T 4fmz_A 186 YNQIEDISP--L--ASLTSLHYFTAYVNQIT-DITP--VANMTRLNSLKIGNNKITDLSP---LANLSQLTWLEIGTNQI 255 (347)
T ss_dssp TSCCCCCGG--G--GGCTTCCEEECCSSCCC-CCGG--GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCC
T ss_pred CCccccccc--c--cCCCccceeecccCCCC-CCch--hhcCCcCCEEEccCCccCCCcc---hhcCCCCCEEECCCCcc
Confidence 999987655 2 27899999999999984 3433 8899999999999999988764 58899999999999999
Q ss_pred CcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhh
Q psy3329 251 SRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLF 330 (694)
Q Consensus 251 ~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 330 (694)
+.++ .+..+++|+.|++++|.+.+. ..+..+++|++|++++|.++...+..+..+++|+.|++++|.++++.+ +
T Consensus 256 ~~~~--~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~ 329 (347)
T 4fmz_A 256 SDIN--AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--L 329 (347)
T ss_dssp CCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--G
T ss_pred CCCh--hHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--h
Confidence 9874 588999999999999999886 357889999999999999999999999999999999999999999887 7
Q ss_pred cCCCCCCEEeCCCCCCc
Q psy3329 331 QNLTHLSVLELNNCGLT 347 (694)
Q Consensus 331 ~~l~~L~~L~L~~n~l~ 347 (694)
..+++|+.|++++|.++
T Consensus 330 ~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 330 ASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGCTTCSEESSSCC---
T ss_pred hhhhccceeehhhhccc
Confidence 88999999999999876
No 39
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=100.00 E-value=4.1e-33 Score=297.86 Aligned_cols=327 Identities=22% Similarity=0.330 Sum_probs=229.3
Q ss_pred ccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccC
Q psy3329 240 LHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSG 319 (694)
Q Consensus 240 L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 319 (694)
...++.++.+++.+|... .++++.|+|++|.+.+..+..|..+++|++|+|++|.++.+.+..|.++++|++|+|++
T Consensus 45 ~~~v~c~~~~l~~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCSSCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcCcCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 345556666666666322 24566777777777666666677777777777777777777766777777777777777
Q ss_pred CcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCC-CcCCCCcccccccccccchhccccch
Q psy3329 320 NKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNP-LHVLPDSTKQYSMRTIPTQIWKNFDF 398 (694)
Q Consensus 320 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~~~~ip~~~~~~~~~ 398 (694)
|+++.+++..|..+++|+.|++++|.++.++...|. .+++|+.|++++|. +.. ++...
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~---~l~~L~~L~l~~~~~l~~------------i~~~~------ 180 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFN---RIPSLRRLDLGELKRLSY------------ISEGA------ 180 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTT---TCTTCCEEECCCCTTCCE------------ECTTT------
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhh---hCcccCEeCCCCCCCcce------------eCcch------
Confidence 777777766677777777777777777776666665 66777777777643 322 22211
Q ss_pred hhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCc
Q psy3329 399 LVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNN 478 (694)
Q Consensus 399 l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 478 (694)
|.+ +++|+.|++++|.++.++. + ..+++|+.|+|++|.|+++++..|.++++|+.|+|++|+
T Consensus 181 -----------~~~---l~~L~~L~L~~n~l~~~~~--~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 242 (440)
T 3zyj_A 181 -----------FEG---LSNLRYLNLAMCNLREIPN--L--TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ 242 (440)
T ss_dssp -----------TTT---CSSCCEEECTTSCCSSCCC--C--TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred -----------hhc---ccccCeecCCCCcCccccc--c--CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCc
Confidence 333 7788888888888887763 4 778999999999999999999999999999999999999
Q ss_pred cCCCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEEEccCCccccccCcHHHHHHHHhccCC--CceeecC
Q psy3329 479 LSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEWATREKGD--IGVLVGS 556 (694)
Q Consensus 479 l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~~~~~~~~~~~~~~~--~~~~~~~ 556 (694)
++++.+..| ..+++|+.|+|++|+++++++..+..+++|+.+++++|||.|||.+.|+..|.+..... .....|.
T Consensus 243 l~~~~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~~l~~~~~~~~~~~~~~~~~C~ 319 (440)
T 3zyj_A 243 IQVIERNAF---DNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCN 319 (440)
T ss_dssp CCEECTTSS---TTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTTHHHHHHHHTTSCSSCSCCCBEE
T ss_pred eeEEChhhh---cCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCchHHHHHHHhccccCCccccCCC
Confidence 999988888 88999999999999999999999999999999999999999999999999999863221 1123344
Q ss_pred CCCcccccccc-CCCCceEEEeecccCCCCCCCCcccccccchhHHHHhhhcCCCCCcccCC
Q psy3329 557 TTPTEIGFGAS-RKKKGLVCYFDIFTTPTRKRPGRELFASTNKTWARYVKEADCPSSKLFRP 617 (694)
Q Consensus 557 ~~~~~~~~~~~-~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (694)
.|....|..+. .....+.|..+.. ..+.......+|......|.+. .+.+...|.
T Consensus 320 ~P~~l~g~~l~~l~~~~~~C~~P~i-----~~~~~~~~v~~G~~v~L~C~~~-~p~p~i~W~ 375 (440)
T 3zyj_A 320 TPPNLKGRYIGELDQNYFTCYAPVI-----VEPPADLNVTEGMAAELKCRAS-TSLTSVSWI 375 (440)
T ss_dssp ESTTTTTCBCC----CCSCCCCCCE-----EECCCCEEECTTSCCEECCEES-STTSEEEEE
T ss_pred ChhHhcCccHhHhhhhhccCCCCcc-----cccccceeeccCceEEEEeecC-CCCCceEEE
Confidence 45555443332 2233445542221 1122233344556666667663 344444443
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=5.2e-33 Score=308.49 Aligned_cols=320 Identities=23% Similarity=0.290 Sum_probs=249.1
Q ss_pred CCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCc
Q psy3329 137 LGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLR 216 (694)
Q Consensus 137 l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 216 (694)
+.+++.+++++|.+..+++..+..+++|+.|++++|.+.+ +++..|..+++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~---------------------------~~~~~~~~l~~L~ 102 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE---------------------------IDTYAFAYAHTIQ 102 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCE---------------------------ECTTTTTTCTTCC
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCC---------------------------CChHHhcCCCCCC
Confidence 3566666666666666666555555555555555555443 2333466677777
Q ss_pred EEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCC
Q psy3329 217 TLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYS 296 (694)
Q Consensus 217 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n 296 (694)
.|+|++|.++..... .+..+++|+.|++++|.++.+++..|..+++|+.|++++|.+.+..+..+..+++|++|+|++|
T Consensus 103 ~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 181 (597)
T 3oja_B 103 KLYMGFNAIRYLPPH-VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 181 (597)
T ss_dssp EEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS
T ss_pred EEECCCCcCCCCCHH-HHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC
Confidence 777777777665543 3467788888888888888888777788888888888888888888888888888888888888
Q ss_pred CCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCC
Q psy3329 297 NLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVL 376 (694)
Q Consensus 297 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 376 (694)
.++.+. +..+++|+.|++++|.+.++. ..++|+.|++++|.++.++... .++|+.|++++|.++..
T Consensus 182 ~l~~~~---~~~l~~L~~L~l~~n~l~~l~-----~~~~L~~L~ls~n~l~~~~~~~------~~~L~~L~L~~n~l~~~ 247 (597)
T 3oja_B 182 RLTHVD---LSLIPSLFHANVSYNLLSTLA-----IPIAVEELDASHNSINVVRGPV------NVELTILKLQHNNLTDT 247 (597)
T ss_dssp CCSBCC---GGGCTTCSEEECCSSCCSEEE-----CCTTCSEEECCSSCCCEEECSC------CSCCCEEECCSSCCCCC
T ss_pred CCCCcC---hhhhhhhhhhhcccCcccccc-----CCchhheeeccCCccccccccc------CCCCCEEECCCCCCCCC
Confidence 888775 456788889999998887643 3568999999999988766432 36899999999988753
Q ss_pred CCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCC
Q psy3329 377 PDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKID 456 (694)
Q Consensus 377 ~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 456 (694)
+. +.. +++|+.|+|++|.++++++..| ..+++|+.|+|++|.++
T Consensus 248 ~~-------------------------------l~~---l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~ 291 (597)
T 3oja_B 248 AW-------------------------------LLN---YPGLVEVDLSYNELEKIMYHPF--VKMQRLERLYISNNRLV 291 (597)
T ss_dssp GG-------------------------------GGG---CTTCSEEECCSSCCCEEESGGG--TTCSSCCEEECTTSCCC
T ss_pred hh-------------------------------hcc---CCCCCEEECCCCccCCCCHHHh--cCccCCCEEECCCCCCC
Confidence 21 223 8899999999999999988888 89999999999999999
Q ss_pred ccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEEEccCCccccccCc
Q psy3329 457 YLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNI 536 (694)
Q Consensus 457 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~~ 536 (694)
+++.. +..+++|+.|+|++|.+++++ ..+ ..+++|+.|+|++|.+++.+ +..+++|+.|++++|+|.|+|..
T Consensus 292 ~l~~~-~~~l~~L~~L~Ls~N~l~~i~-~~~---~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~ 363 (597)
T 3oja_B 292 ALNLY-GQPIPTLKVLDLSHNHLLHVE-RNQ---PQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR 363 (597)
T ss_dssp EEECS-SSCCTTCCEEECCSSCCCCCG-GGH---HHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH
T ss_pred CCCcc-cccCCCCcEEECCCCCCCccC-ccc---ccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHH
Confidence 98654 578999999999999999654 445 78999999999999999875 45678999999999999999866
Q ss_pred HHHHHH
Q psy3329 537 ADMWEW 542 (694)
Q Consensus 537 ~~~~~~ 542 (694)
.|+..|
T Consensus 364 ~~~~~~ 369 (597)
T 3oja_B 364 ALFRNV 369 (597)
T ss_dssp HHTTTC
T ss_pred HHHHHH
Confidence 665444
No 41
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=100.00 E-value=1e-32 Score=295.86 Aligned_cols=325 Identities=23% Similarity=0.313 Sum_probs=230.7
Q ss_pred ccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccC
Q psy3329 240 LHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSG 319 (694)
Q Consensus 240 L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 319 (694)
...++.++.+++.+|... .++++.|+|++|.+.+..+..|..+++|++|+|++|.++.+.+..|.++++|++|+|++
T Consensus 56 ~~~v~c~~~~l~~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcCccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 345555666666665321 24667777777777766666677777777777777777777766777777777777777
Q ss_pred CcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCC-CCcCCCCcccccccccccchhccccch
Q psy3329 320 NKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGN-PLHVLPDSTKQYSMRTIPTQIWKNFDF 398 (694)
Q Consensus 320 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~~~~~ip~~~~~~~~~ 398 (694)
|.++.+++..|..+++|++|++++|.++.++...|. .+++|+.|++++| .+.. +|...
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~---~l~~L~~L~l~~~~~l~~------------i~~~~------ 191 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFN---RVPSLMRLDLGELKKLEY------------ISEGA------ 191 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTT---TCTTCCEEECCCCTTCCE------------ECTTT------
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHh---cCCcccEEeCCCCCCccc------------cChhh------
Confidence 777777776677777777777777777777666665 6777777777764 3322 22211
Q ss_pred hhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCc
Q psy3329 399 LVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNN 478 (694)
Q Consensus 399 l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 478 (694)
|.+ +++|+.|++++|.+++++. + ..+++|+.|+|++|.|+++++..|.++++|+.|+|++|+
T Consensus 192 -----------~~~---l~~L~~L~L~~n~l~~~~~--~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 253 (452)
T 3zyi_A 192 -----------FEG---LFNLKYLNLGMCNIKDMPN--L--TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ 253 (452)
T ss_dssp -----------TTT---CTTCCEEECTTSCCSSCCC--C--TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSC
T ss_pred -----------ccC---CCCCCEEECCCCccccccc--c--cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCc
Confidence 333 7888888888888888753 4 678999999999999999999999999999999999999
Q ss_pred cCCCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEEEccCCccccccCcHHHHHHHHhccCCC--ceeecC
Q psy3329 479 LSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEWATREKGDI--GVLVGS 556 (694)
Q Consensus 479 l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~~~~~~~~~~~~~~~~--~~~~~~ 556 (694)
++++.+..| ..+++|+.|+|++|+++++++..+..+++|+.+++++|||.|||.+.|+..|.+...... ....|.
T Consensus 254 l~~~~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~~l~~~l~~~~~~~~~~~~~C~ 330 (452)
T 3zyi_A 254 VSLIERNAF---DGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGRCH 330 (452)
T ss_dssp CCEECTTTT---TTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTTHHHHHHHHHHC---CCSSCBEE
T ss_pred CceECHHHh---cCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCchHHHHHHHHhCccCCccCcEeC
Confidence 999988888 889999999999999999999999999999999999999999999999999988732211 122344
Q ss_pred CCCcccccccc-CCCCceEEEeecccCCCCCCCCcccccccchhHHHHhhhcCCCCCcccC
Q psy3329 557 TTPTEIGFGAS-RKKKGLVCYFDIFTTPTRKRPGRELFASTNKTWARYVKEADCPSSKLFR 616 (694)
Q Consensus 557 ~~~~~~~~~~~-~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (694)
.|....|.... .....+.|..+ ............+|......|.+. |.+.+.|
T Consensus 331 ~P~~l~g~~l~~~~~~~~~C~~P-----~i~~~~~~~~v~~G~~~~l~C~~~--p~p~i~W 384 (452)
T 3zyi_A 331 APMHMRGRYLVEVDQASFQCSAP-----FIMDAPRDLNISEGRMAELKCRTP--PMSSVKW 384 (452)
T ss_dssp ESTTTTTCBTTSCCGGGCCCCCC-----CCSBCCCCEECCTTSCCEECCBCC--TTSEEEE
T ss_pred CchHhccchhhccchhhhcccCc-----ccccccccccccCCCEEEEEEeCC--CCCcEEE
Confidence 45554443332 22234455432 222222333445556666666665 4444444
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=7.8e-32 Score=299.02 Aligned_cols=310 Identities=23% Similarity=0.283 Sum_probs=257.0
Q ss_pred cCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCcCCccChhhhcCCCCCCEE
Q psy3329 38 VARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTL 117 (694)
Q Consensus 38 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 117 (694)
.+++++.|++++|.+..+++..|..+++|++|+|++|.++.+++..|..+++|++|+|++|.++++++..|+++++|+.|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 35678888888888888877778888888888888888888887778888888888888888888888888888888888
Q ss_pred ECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCCcchhhhcccCCCcccEEeCCC
Q psy3329 118 ELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSN 197 (694)
Q Consensus 118 ~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~ 197 (694)
++++|.+..++. ..++++++|++|++++|.+..+++..|..+++|++|++++|.+..++.. .+++|+.|++++
T Consensus 129 ~L~~n~l~~l~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-----~l~~L~~L~l~~ 201 (597)
T 3oja_B 129 VLERNDLSSLPR--GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS-----LIPSLFHANVSY 201 (597)
T ss_dssp ECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGG-----GCTTCSEEECCS
T ss_pred EeeCCCCCCCCH--HHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChh-----hhhhhhhhhccc
Confidence 888888875433 3467888888888888888888888888888888888888888776422 577888999988
Q ss_pred CCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCccc
Q psy3329 198 CHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDA 277 (694)
Q Consensus 198 n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~ 277 (694)
|.+.+ +...++|+.|++++|.+...... ..++|+.|++++|.+++. ..+..+++|+.|++++|.+.+.
T Consensus 202 n~l~~------l~~~~~L~~L~ls~n~l~~~~~~----~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~ 269 (597)
T 3oja_B 202 NLLST------LAIPIAVEELDASHNSINVVRGP----VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKI 269 (597)
T ss_dssp SCCSE------EECCTTCSEEECCSSCCCEEECS----CCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEE
T ss_pred Ccccc------ccCCchhheeeccCCcccccccc----cCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCC
Confidence 87732 34566899999999998776532 237899999999999886 4688899999999999999999
Q ss_pred chhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccC
Q psy3329 278 FTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHEN 357 (694)
Q Consensus 278 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 357 (694)
+|..+..+++|+.|+|++|.+++++ ..+..+++|+.|+|++|.+..+++. +..+++|+.|++++|.++.++. .
T Consensus 270 ~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~~~-~~~l~~L~~L~L~~N~l~~~~~---~-- 342 (597)
T 3oja_B 270 MYHPFVKMQRLERLYISNNRLVALN-LYGQPIPTLKVLDLSHNHLLHVERN-QPQFDRLENLYLDHNSIVTLKL---S-- 342 (597)
T ss_dssp ESGGGTTCSSCCEEECTTSCCCEEE-CSSSCCTTCCEEECCSSCCCCCGGG-HHHHTTCSEEECCSSCCCCCCC---C--
T ss_pred CHHHhcCccCCCEEECCCCCCCCCC-cccccCCCCcEEECCCCCCCccCcc-cccCCCCCEEECCCCCCCCcCh---h--
Confidence 9999999999999999999999875 4556789999999999999987654 6778999999999999988752 2
Q ss_pred CCCCCCCeeeCCCCCCc
Q psy3329 358 YTYPDLEELRLSGNPLH 374 (694)
Q Consensus 358 ~~~~~L~~L~Ls~n~l~ 374 (694)
.+++|+.|++++|++.
T Consensus 343 -~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 343 -THHTLKNLTLSHNDWD 358 (597)
T ss_dssp -TTCCCSEEECCSSCEE
T ss_pred -hcCCCCEEEeeCCCCC
Confidence 6789999999999875
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=3.9e-30 Score=264.11 Aligned_cols=290 Identities=20% Similarity=0.251 Sum_probs=198.2
Q ss_pred CCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCcCCccChhhhcCCCCCCEEECC
Q psy3329 41 SLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELS 120 (694)
Q Consensus 41 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 120 (694)
+++.++++++.+..++. .+ .++|++|++++|.++.+++..|.++++|++|++++|.++++.+.+|.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~ip~-~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPK-EI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSSCCS-CC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCccccCC-CC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 68888888888887743 33 3688899999999888888788889999999999999988888888899999999999
Q ss_pred CCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCCcchhhhcccCCCcccEEeCCCCCC
Q psy3329 121 QNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHL 200 (694)
Q Consensus 121 ~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~ 200 (694)
+|.+..++ ..+. ++|++|++++|.+..+++..|..+++|++|++++|.+.......
T Consensus 111 ~n~l~~l~---~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~------------------- 166 (332)
T 2ft3_A 111 KNHLVEIP---PNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEP------------------- 166 (332)
T ss_dssp SSCCCSCC---SSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCT-------------------
T ss_pred CCcCCccC---cccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCc-------------------
Confidence 99887543 2332 78899999999988888888888888888888888775422211
Q ss_pred CCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchh
Q psy3329 201 KGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTA 280 (694)
Q Consensus 201 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~ 280 (694)
..+..+ +|+.|++++|.++..+.. ..++|++|++++|.++.+++..+..+++|+.|++++|.+.+..+.
T Consensus 167 ------~~~~~l-~L~~L~l~~n~l~~l~~~----~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~ 235 (332)
T 2ft3_A 167 ------GAFDGL-KLNYLRISEAKLTGIPKD----LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENG 235 (332)
T ss_dssp ------TSSCSC-CCSCCBCCSSBCSSCCSS----SCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTT
T ss_pred ------ccccCC-ccCEEECcCCCCCccCcc----ccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChh
Confidence 112222 444444444444433211 114566666666666666655666666666666666666666665
Q ss_pred hcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcC------CCCCCEEeCCCCCCc--ccCcc
Q psy3329 281 LLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQN------LTHLSVLELNNCGLT--RLNET 352 (694)
Q Consensus 281 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~------l~~L~~L~L~~n~l~--~~~~~ 352 (694)
.+..+++|++|++++|.++.++. .+..+++|+.|++++|.++.+++..|.. ...|+.|++++|.+. .+.+.
T Consensus 236 ~~~~l~~L~~L~L~~N~l~~lp~-~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~ 314 (332)
T 2ft3_A 236 SLSFLPTLRELHLDNNKLSRVPA-GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPA 314 (332)
T ss_dssp GGGGCTTCCEEECCSSCCCBCCT-TGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGG
T ss_pred HhhCCCCCCEEECCCCcCeecCh-hhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcc
Confidence 66666667777777776665543 4666677777777777777666655543 255777777777766 45666
Q ss_pred ccccCCCCCCCCeeeCCCCC
Q psy3329 353 VFHENYTYPDLEELRLSGNP 372 (694)
Q Consensus 353 ~~~~~~~~~~L~~L~Ls~n~ 372 (694)
.|. .+++|+.+++++|+
T Consensus 315 ~~~---~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 315 TFR---CVTDRLAIQFGNYK 331 (332)
T ss_dssp GGT---TBCCSTTEEC----
T ss_pred ccc---ccchhhhhhccccc
Confidence 665 67777777777764
No 44
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=3.3e-30 Score=261.55 Aligned_cols=242 Identities=26% Similarity=0.417 Sum_probs=166.4
Q ss_pred CccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccC--hhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEe
Q psy3329 263 CLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRIS--RSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLE 340 (694)
Q Consensus 263 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 340 (694)
+|+.|++++|.+....+..+..+++|++|+|++|.++.+. +..+..+++|++|++++|.+..++.. +..+++|++|+
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~-~~~l~~L~~L~ 107 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLD 107 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEE-EETCTTCCEEE
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhh-cCCCCCCCEEE
Confidence 4444444444444433333444445555555555444321 23334455555555555555444332 44555555555
Q ss_pred CCCCCCcccCc-cccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCC
Q psy3329 341 LNNCGLTRLNE-TVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDL 419 (694)
Q Consensus 341 L~~n~l~~~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L 419 (694)
+++|.++.++. ..+. .+++|+.|++++|.+..... .. +.+ +++|
T Consensus 108 l~~n~l~~~~~~~~~~---~l~~L~~L~l~~n~l~~~~~-----------~~------------------~~~---l~~L 152 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFL---SLRNLIYLDISHTHTRVAFN-----------GI------------------FNG---LSSL 152 (306)
T ss_dssp CTTSEEESSTTTTTTT---TCTTCCEEECTTSCCEECST-----------TT------------------TTT---CTTC
T ss_pred CCCCcccccccchhhh---hccCCCEEECCCCcCCccch-----------hh------------------ccc---CcCC
Confidence 55555555443 2333 45556666666655543211 00 122 6778
Q ss_pred ceEEcCCCCCcc-cCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcE
Q psy3329 420 EELRLSGNPLHV-LPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELES 498 (694)
Q Consensus 420 ~~L~Ls~n~l~~-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~ 498 (694)
++|++++|.+++ ..+..+ ..+++|+.|+|++|.++++++..|..+++|++|+|++|++++..+..+ ..+++|+.
T Consensus 153 ~~L~l~~n~l~~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~---~~l~~L~~ 227 (306)
T 2z66_A 153 EVLKMAGNSFQENFLPDIF--TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY---KCLNSLQV 227 (306)
T ss_dssp CEEECTTCEEGGGEECSCC--TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGG---TTCTTCCE
T ss_pred CEEECCCCccccccchhHH--hhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhc---cCcccCCE
Confidence 888888888776 456666 789999999999999999988889999999999999999999888777 88999999
Q ss_pred EECCCCcccccChhhhcCCC-cccEEEccCCccccccCcHHHHHHHHh
Q psy3329 499 LDLSNNNLTHISPTVLRHNR-AITSIKLVGNPWKCDCNIADMWEWATR 545 (694)
Q Consensus 499 L~ls~N~l~~~~~~~~~~~~-~l~~l~l~~N~~~c~c~~~~~~~~~~~ 545 (694)
|++++|++++.++..+..++ +|+.+++++|+|.|+|+..|+..|++.
T Consensus 228 L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~ 275 (306)
T 2z66_A 228 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKD 275 (306)
T ss_dssp EECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHH
T ss_pred eECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHh
Confidence 99999999999888888884 999999999999999999999999876
No 45
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=6.9e-30 Score=256.28 Aligned_cols=239 Identities=28% Similarity=0.436 Sum_probs=179.5
Q ss_pred cEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCC
Q psy3329 241 HRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGN 320 (694)
Q Consensus 241 ~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 320 (694)
+.++.+++.++.+|.. ..++|+.|++++|.+.+..+..+..+++|++|++++|.++.+.+..|.++++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~~---~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVG---IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSCCTT---CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccCCcC---CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 4556666666665532 2345666666666666655555666666666666666666665556666666666666666
Q ss_pred c-ccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchh
Q psy3329 321 K-LETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFL 399 (694)
Q Consensus 321 ~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l 399 (694)
. +..+.+..+..+++|++|++++|.++.+++..+. .
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~---~---------------------------------------- 127 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR---G---------------------------------------- 127 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT---T----------------------------------------
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhh---C----------------------------------------
Confidence 5 5555555566666666666666665554433332 1
Q ss_pred hhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCcc
Q psy3329 400 VILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNL 479 (694)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l 479 (694)
+++|++|++++|.++++++..+ ..+++|+.|+|++|.++++++..|.++++|+.|++++|++
T Consensus 128 ----------------l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 128 ----------------LAALQYLYLQDNALQALPDDTF--RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp ----------------CTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ----------------CcCCCEEECCCCcccccCHhHh--ccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence 5667777777777777777667 7889999999999999999988899999999999999999
Q ss_pred CCCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEEEccCCccccccCcHHHHHHHHhc
Q psy3329 480 SMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEWATRE 546 (694)
Q Consensus 480 ~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~~~~~~~~~~~~ 546 (694)
++..|..| ..+++|+.|++++|+++++++..+..+++|+.+++++|+|.|+|+..|+..|++..
T Consensus 190 ~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~ 253 (285)
T 1ozn_A 190 AHVHPHAF---RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKF 253 (285)
T ss_dssp CEECTTTT---TTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHC
T ss_pred cccCHhHc---cCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhc
Confidence 99888887 88999999999999999998888999999999999999999999999999999873
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=2.5e-29 Score=257.96 Aligned_cols=291 Identities=22% Similarity=0.313 Sum_probs=178.4
Q ss_pred CCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCcCCccChhhhcCCCCCCEEECC
Q psy3329 41 SLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELS 120 (694)
Q Consensus 41 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 120 (694)
+++.++++++.+..++ ..+ .+.|++|++++|.++.+++..|.++++|++|++++|.++++.|..|.++++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~lp-~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVP-KDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCSCC-CSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccccC-ccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 4555555555554442 211 1455555555555555555455555555555555555555555555555555555555
Q ss_pred CCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCCcchhhhcccCCCcccEEeCCCCCC
Q psy3329 121 QNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHL 200 (694)
Q Consensus 121 ~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~ 200 (694)
+|.++.++ ..+ .++|++|++++|.+..+++..+..+++|+.|++++|.+............+++|++|++++|.+
T Consensus 109 ~n~l~~l~---~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 183 (330)
T 1xku_A 109 KNQLKELP---EKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183 (330)
T ss_dssp SSCCSBCC---SSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred CCcCCccC---hhh--cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence 55554322 111 1455566666555555555555556666666666655543221111112456666666666666
Q ss_pred CCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchh
Q psy3329 201 KGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTA 280 (694)
Q Consensus 201 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~ 280 (694)
..++... .++|+.|++++|.++..... .+..+++|+.|++++|.++++++..+..+++|+.|++++|.+. .+|.
T Consensus 184 -~~l~~~~---~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~ 257 (330)
T 1xku_A 184 -TTIPQGL---PPSLTELHLDGNKITKVDAA-SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPG 257 (330)
T ss_dssp -CSCCSSC---CTTCSEEECTTSCCCEECTG-GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCT
T ss_pred -ccCCccc---cccCCEEECCCCcCCccCHH-HhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCCh
Confidence 3344321 26777788877777766443 3467778888888888888777667777888888888888777 4555
Q ss_pred hcCCCCCCcEEECcCCCCcccChhhhcC------CCCCcEEeccCCcccC--cCchhhcCCCCCCEEeCCCCC
Q psy3329 281 LLSPLESLEHLDMGYSNLQRISRSTFLK------MTSLKTLILSGNKLET--LESGLFQNLTHLSVLELNNCG 345 (694)
Q Consensus 281 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~ 345 (694)
.+..+++|++|++++|.++.+++..|.. .+.++.|++++|.+.. +.+..|..+.+++.+++++|+
T Consensus 258 ~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 258 GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred hhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 6777888888888888888887776643 3678888888887763 667778888888888888874
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=2.2e-29 Score=258.37 Aligned_cols=291 Identities=19% Similarity=0.250 Sum_probs=204.6
Q ss_pred CCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEE
Q psy3329 64 TTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTL 143 (694)
Q Consensus 64 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L 143 (694)
.+++.++++++.++.++.. + .++|++|++++|.++++.+..|.++++|++|++++|.++.+. +..+.++++|++|
T Consensus 31 c~l~~l~~~~~~l~~lp~~-~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L 105 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKD-L--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS--PGAFAPLVKLERL 105 (330)
T ss_dssp EETTEEECTTSCCCSCCCS-C--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBC--TTTTTTCTTCCEE
T ss_pred CCCeEEEecCCCccccCcc-C--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeC--HHHhcCCCCCCEE
Confidence 3677788887777776543 2 257778888888888777777778888888888888777432 3567777888888
Q ss_pred EccCCCCCCCCccccCCCCCCcEEeCCCCCCCCcchhhhcccCCCcccEEeCCCCCCCC-CCChhhhhcCCCCcEEEcCC
Q psy3329 144 DLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKG-PLSEDAFVNATKLRTLYLSG 222 (694)
Q Consensus 144 ~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~~L~~L~L~~ 222 (694)
++++|.++.++...+ ++|++|++++|.+.......+. .+++|+.|++++|.+.. .+....+..+++|+.|++++
T Consensus 106 ~Ls~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~ 180 (330)
T 1xku_A 106 YLSKNQLKELPEKMP---KTLQELRVHENEITKVRKSVFN--GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD 180 (330)
T ss_dssp ECCSSCCSBCCSSCC---TTCCEEECCSSCCCBBCHHHHT--TCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS
T ss_pred ECCCCcCCccChhhc---ccccEEECCCCcccccCHhHhc--CCccccEEECCCCcCCccCcChhhccCCCCcCEEECCC
Confidence 888888777665443 5778888888877765544433 67778888888877632 13334577778888888888
Q ss_pred CCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccC
Q psy3329 223 NPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRIS 302 (694)
Q Consensus 223 n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 302 (694)
|.++..+.. ..++|++|++++|.++++.+..+..+++|+.|++++|.+.+..+..+..+++|++|+|++|.++.++
T Consensus 181 n~l~~l~~~----~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp 256 (330)
T 1xku_A 181 TNITTIPQG----LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP 256 (330)
T ss_dssp SCCCSCCSS----CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCC
T ss_pred CccccCCcc----ccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCC
Confidence 877765432 1267888888888887777677777788888888888877777667777778888888888777655
Q ss_pred hhhhcCCCCCcEEeccCCcccCcCchhhcC------CCCCCEEeCCCCCCcc--cCccccccCCCCCCCCeeeCCCCC
Q psy3329 303 RSTFLKMTSLKTLILSGNKLETLESGLFQN------LTHLSVLELNNCGLTR--LNETVFHENYTYPDLEELRLSGNP 372 (694)
Q Consensus 303 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~------l~~L~~L~L~~n~l~~--~~~~~~~~~~~~~~L~~L~Ls~n~ 372 (694)
..+..+++|+.|++++|.++++++..|.. ...|+.|++++|.+.. +++..|. .+..++.+++++|+
T Consensus 257 -~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~---~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 257 -GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR---CVYVRAAVQLGNYK 330 (330)
T ss_dssp -TTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGT---TCCCGGGEEC----
T ss_pred -hhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccc---cccceeEEEecccC
Confidence 35677778888888888887777666643 2667778888887764 5555665 66778888887764
No 48
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=1.2e-30 Score=270.28 Aligned_cols=291 Identities=23% Similarity=0.338 Sum_probs=211.6
Q ss_pred CCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEE
Q psy3329 212 ATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHL 291 (694)
Q Consensus 212 ~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 291 (694)
|+.....+++++.++.++.. -.++|++|++++|++++++...+..+++|+.|++++|.+.+..+..+..+++|++|
T Consensus 30 C~~~~~c~~~~~~l~~iP~~----~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIPSG----LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp ECTTSEEECCSTTCSSCCTT----CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCeEeeCCCCCccccccc----ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 44444566666666655421 12467777777777777766667777777777777777777666677777777777
Q ss_pred ECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCc-hhhcCCCCCCEEeCCCC-CCcccCccccccCCCCCCCCeeeCC
Q psy3329 292 DMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLES-GLFQNLTHLSVLELNNC-GLTRLNETVFHENYTYPDLEELRLS 369 (694)
Q Consensus 292 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~L~~L~Ls 369 (694)
++++|.++.+++..|.++++|++|++++|.++.++. ..+..+++|++|++++| .++.+++..+. .+++|++|+++
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~---~l~~L~~L~l~ 182 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA---GLTFLEELEID 182 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT---TCCEEEEEEEE
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHcc---CCCCCCEEECC
Confidence 777777777776667777777777777777777665 55677777777777777 46666665555 67777777777
Q ss_pred CCCCcCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEE
Q psy3329 370 GNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLD 449 (694)
Q Consensus 370 ~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~ 449 (694)
+|.++.... .. +.. +++|++|++++|.++.++...+ ..+++|+.|+
T Consensus 183 ~n~l~~~~~-----------~~------------------l~~---l~~L~~L~l~~n~l~~~~~~~~--~~~~~L~~L~ 228 (353)
T 2z80_A 183 ASDLQSYEP-----------KS------------------LKS---IQNVSHLILHMKQHILLLEIFV--DVTSSVECLE 228 (353)
T ss_dssp ETTCCEECT-----------TT------------------TTT---CSEEEEEEEECSCSTTHHHHHH--HHTTTEEEEE
T ss_pred CCCcCccCH-----------HH------------------Hhc---cccCCeecCCCCccccchhhhh--hhcccccEEE
Confidence 777654321 11 222 6778888888888776655444 5678888888
Q ss_pred ccCCcCCccCCCCCC---CCCCCCEEEccCCccCCC----cchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccE
Q psy3329 450 LSRCKIDYLPPNVFN---NTRNITSLNLANNNLSMT----SELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITS 522 (694)
Q Consensus 450 Ls~n~l~~~~~~~~~---~l~~L~~L~L~~N~l~~~----~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~ 522 (694)
+++|.+++.++..+. ....++.++|+++.+++. +|..+ ..+++|+.|++++|+++.+++..+..+++|+.
T Consensus 229 L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l---~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~ 305 (353)
T 2z80_A 229 LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLL---NQISGLLELEFSRNQLKSVPDGIFDRLTSLQK 305 (353)
T ss_dssp EESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHH---HTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCccccccccccccccccchhhccccccccccCcchhhhHHHH---hcccCCCEEECCCCCCCccCHHHHhcCCCCCE
Confidence 888888886654333 466788999999988763 34445 78999999999999999887777889999999
Q ss_pred EEccCCccccccC-cHHHHHHHHhc
Q psy3329 523 IKLVGNPWKCDCN-IADMWEWATRE 546 (694)
Q Consensus 523 l~l~~N~~~c~c~-~~~~~~~~~~~ 546 (694)
+++++|++.|+|+ +.|+..|....
T Consensus 306 L~L~~N~~~~~~~~l~~l~~~~~~~ 330 (353)
T 2z80_A 306 IWLHTNPWDCSCPRIDYLSRWLNKN 330 (353)
T ss_dssp EECCSSCBCCCHHHHHHHHHHHHHT
T ss_pred EEeeCCCccCcCCCcHHHHHHHHhc
Confidence 9999999999997 88999998874
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.9e-29 Score=258.96 Aligned_cols=289 Identities=19% Similarity=0.284 Sum_probs=203.5
Q ss_pred CCceEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCC
Q psy3329 17 PGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLN 96 (694)
Q Consensus 17 ~~L~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~ 96 (694)
.+++.++++++.++.+|..+ .+++++|++++|.+..+.+..|.++++|++|++++|.++.+.+..|..+++|++|+++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp EETTEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred ccCCEEECCCCCccccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 37999999999999999655 4789999999999999989899999999999999999999988889999999999999
Q ss_pred CCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCC--CCccccCCCCCCcEEeCCCCCC
Q psy3329 97 RCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISN--LPDNVFANNTWLRNLNLAENEL 174 (694)
Q Consensus 97 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~~~~~~L~~L~l~~n~l 174 (694)
+|.++.+++..+ ++|++|++++|.+..+.. ..+.++++|++|++++|.++. ..+..+..+ +|++|++++|.+
T Consensus 111 ~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l 184 (332)
T 2ft3_A 111 KNHLVEIPPNLP---SSLVELRIHDNRIRKVPK--GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL 184 (332)
T ss_dssp SSCCCSCCSSCC---TTCCEEECCSSCCCCCCS--GGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred CCcCCccCcccc---ccCCEEECCCCccCccCH--hHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence 999998754433 799999999999986543 568899999999999999964 666667777 888888888887
Q ss_pred CCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCC
Q psy3329 175 IDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLP 254 (694)
Q Consensus 175 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~ 254 (694)
+.++.. ..++|++|++++|.+. .++...+..+++|+.|++++| .+++++
T Consensus 185 ~~l~~~-----~~~~L~~L~l~~n~i~-~~~~~~l~~l~~L~~L~L~~N-------------------------~l~~~~ 233 (332)
T 2ft3_A 185 TGIPKD-----LPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHN-------------------------QIRMIE 233 (332)
T ss_dssp SSCCSS-----SCSSCSCCBCCSSCCC-CCCTTSSTTCTTCSCCBCCSS-------------------------CCCCCC
T ss_pred CccCcc-----ccCCCCEEECCCCcCC-ccCHHHhcCCCCCCEEECCCC-------------------------cCCcCC
Confidence 764321 1245566666666552 233233444455555555544 444444
Q ss_pred cccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcC------CCCCcEEeccCCccc--CcC
Q psy3329 255 ANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLK------MTSLKTLILSGNKLE--TLE 326 (694)
Q Consensus 255 ~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~L~~n~l~--~~~ 326 (694)
+..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.++.++...|.. .+.|+.|++++|.+. .+.
T Consensus 234 ~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~ 312 (332)
T 2ft3_A 234 NGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQ 312 (332)
T ss_dssp TTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSC
T ss_pred hhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccC
Confidence 444455555555555555544 23333445555555555555555555444433 245667777777665 556
Q ss_pred chhhcCCCCCCEEeCCCCC
Q psy3329 327 SGLFQNLTHLSVLELNNCG 345 (694)
Q Consensus 327 ~~~l~~l~~L~~L~L~~n~ 345 (694)
+..|..+++|+.+++++|+
T Consensus 313 ~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 313 PATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGGGTTBCCSTTEEC----
T ss_pred cccccccchhhhhhccccc
Confidence 6666677777777776653
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=2e-30 Score=263.19 Aligned_cols=255 Identities=19% Similarity=0.206 Sum_probs=203.5
Q ss_pred CCccEEEccCcCCCc--CCcccccCCCCccEEeCCC-CCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcE
Q psy3329 238 TKLHRLSLRNCGLSR--LPANTFHRFTCLQELDISH-NPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKT 314 (694)
Q Consensus 238 ~~L~~L~l~~n~i~~--~~~~~~~~~~~L~~L~L~~-n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 314 (694)
.+++.|++++|.+++ ..+..+..+++|++|++++ |.+.+.+|..+..+++|++|+|++|.+++..+..|.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 467777777777775 4445677778888888874 7777777777777888888888888887666677778888888
Q ss_pred EeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCC-CCCeeeCCCCCCcCCCCcccccccccccchhc
Q psy3329 315 LILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYP-DLEELRLSGNPLHVLPDSTKQYSMRTIPTQIW 393 (694)
Q Consensus 315 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~-~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~ 393 (694)
|++++|.+++..+..+..+++|++|++++|.+++..+..+. .++ .|+.|++++|+++. .+|..+
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~---~l~~~L~~L~L~~N~l~~-----------~~~~~~- 194 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG---SFSKLFTSMTISRNRLTG-----------KIPPTF- 194 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG---CCCTTCCEEECCSSEEEE-----------ECCGGG-
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHh---hhhhcCcEEECcCCeeec-----------cCChHH-
Confidence 88888888877777777888888888888888753333343 555 78888888887752 222221
Q ss_pred cccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEE
Q psy3329 394 KNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLN 473 (694)
Q Consensus 394 ~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 473 (694)
.. ++ |+.|++++|.+++..+..+ ..+++|+.|+|++|.+++.++. +..+++|++|+
T Consensus 195 -----------------~~---l~-L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~ 250 (313)
T 1ogq_A 195 -----------------AN---LN-LAFVDLSRNMLEGDASVLF--GSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLD 250 (313)
T ss_dssp -----------------GG---CC-CSEEECCSSEEEECCGGGC--CTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEE
T ss_pred -----------------hC---Cc-ccEEECcCCcccCcCCHHH--hcCCCCCEEECCCCceeeecCc-ccccCCCCEEE
Confidence 22 44 9999999999998888888 8899999999999999987776 78899999999
Q ss_pred ccCCccCCCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEEEccCCccccccC
Q psy3329 474 LANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCN 535 (694)
Q Consensus 474 L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~ 535 (694)
|++|++++.+|..+ ..+++|+.|+|++|++++.+|.. ..+++|+.+++++|++.|+.+
T Consensus 251 Ls~N~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 251 LRNNRIYGTLPQGL---TQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CCSSCCEECCCGGG---GGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred CcCCcccCcCChHH---hcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 99999999999888 88999999999999999988876 778999999999999999754
No 51
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=1e-30 Score=281.84 Aligned_cols=357 Identities=22% Similarity=0.275 Sum_probs=272.4
Q ss_pred CCCceEEECcCCCCcchh--hhhhcCCCCcEEEccCCcCCcc----ChhhccCCCCCCeEECCCCCCCccCCCCC-CCCC
Q psy3329 16 NPGLITINLNANPIQPVE--GAFLVARSLLYLYMQECTLSKI----NPQFFTNLTTLNKLDLSGNPLRIIEPGVF-DPLT 88 (694)
Q Consensus 16 ~~~L~~L~Ls~~~l~~i~--~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~-~~l~ 88 (694)
.+++++|+|+++.++..+ ..+..+++|++|++++|.+... .+..+..+++|++|++++|.+.......+ ..++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 357899999999999766 4588999999999999998753 25668889999999999999875322112 2333
Q ss_pred ----CCCEEeCCCCcCCc----cChhhhcCCCCCCEEECCCCcCCccc--hhhhh-hcCCCCCCEEEccCCCCCCCC---
Q psy3329 89 ----SLEYLMLNRCNLTY----ISPSAFDNLNHLKTLELSQNKLKSHI--DWTLV-LGNLGKLDTLDLRQSGISNLP--- 154 (694)
Q Consensus 89 ----~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~--~~~~~-~~~l~~L~~L~L~~n~i~~~~--- 154 (694)
+|++|++++|.++. ..+..+..+++|++|++++|.+...+ .+... ....++|++|++++|.++...
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 79999999999985 34788999999999999999987432 12222 233678999999999998754
Q ss_pred -ccccCCCCCCcEEeCCCCCCCCcchhhhc---ccCCCcccEEeCCCCCCCCCC---ChhhhhcCCCCcEEEcCCCCCCc
Q psy3329 155 -DNVFANNTWLRNLNLAENELIDLDVATTL---GQNLVHLDSLDLSNCHLKGPL---SEDAFVNATKLRTLYLSGNPLSA 227 (694)
Q Consensus 155 -~~~~~~~~~L~~L~l~~n~l~~~~~~~~~---~~~~~~L~~L~l~~n~~~~~~---~~~~~~~~~~L~~L~L~~n~l~~ 227 (694)
+..+..+++|++|++++|.+.+....... ....++|++|++++|.+.+.. -...+..+++|++|++++|.+++
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 34566789999999999998754333221 113569999999999984421 12456789999999999999876
Q ss_pred cchh----hhccCCCCccEEEccCcCCCcCC----cccccCCCCccEEeCCCCCCcccchhhc-----CCCCCCcEEECc
Q psy3329 228 ADLS----VALKPLTKLHRLSLRNCGLSRLP----ANTFHRFTCLQELDISHNPLIDAFTALL-----SPLESLEHLDMG 294 (694)
Q Consensus 228 ~~~~----~~l~~l~~L~~L~l~~n~i~~~~----~~~~~~~~~L~~L~L~~n~~~~~~~~~~-----~~l~~L~~L~L~ 294 (694)
.... .....+++|+.|++++|.++... +..+..+++|++|++++|.+.+..+..+ ...++|++|+++
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 321 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence 5432 12235899999999999998732 3456778999999999999876543332 234699999999
Q ss_pred CCCCcccC----hhhhcCCCCCcEEeccCCcccCcCchhhcC-----CCCCCEEeCCCCCCcc----cCccccccCCCCC
Q psy3329 295 YSNLQRIS----RSTFLKMTSLKTLILSGNKLETLESGLFQN-----LTHLSVLELNNCGLTR----LNETVFHENYTYP 361 (694)
Q Consensus 295 ~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-----l~~L~~L~L~~n~l~~----~~~~~~~~~~~~~ 361 (694)
+|.++... +..+..+++|++|++++|.+++..+..+.. .++|+.|++++|.++. ..+..+. .++
T Consensus 322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~---~~~ 398 (461)
T 1z7x_W 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLL---ANH 398 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH---HCC
T ss_pred CCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHH---hCC
Confidence 99998763 345677899999999999998765544432 6799999999999985 2233333 689
Q ss_pred CCCeeeCCCCCCcC
Q psy3329 362 DLEELRLSGNPLHV 375 (694)
Q Consensus 362 ~L~~L~Ls~n~l~~ 375 (694)
+|++|++++|+++.
T Consensus 399 ~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 399 SLRELDLSNNCLGD 412 (461)
T ss_dssp CCCEEECCSSSCCH
T ss_pred CccEEECCCCCCCH
Confidence 99999999999863
No 52
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=2.3e-30 Score=279.15 Aligned_cols=361 Identities=19% Similarity=0.159 Sum_probs=276.9
Q ss_pred cCCCCCceEEECcCCCCc-----chhhhhhcCCCCcEEEccCCcCCccChhhc-cCCC----CCCeEECCCCCCCc----
Q psy3329 13 NLDNPGLITINLNANPIQ-----PVEGAFLVARSLLYLYMQECTLSKINPQFF-TNLT----TLNKLDLSGNPLRI---- 78 (694)
Q Consensus 13 ~~~~~~L~~L~Ls~~~l~-----~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~l~----~L~~L~Ls~n~~~~---- 78 (694)
|..+++|++|++++|.++ .++..+..+++|++|++++|.+....+..+ ..++ +|++|++++|.++.
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~ 103 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 103 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence 677899999999999998 456788889999999999999877544433 3455 79999999999984
Q ss_pred cCCCCCCCCCCCCEEeCCCCcCCccChhhh-----cCCCCCCEEECCCCcCCccc--hhhhhhcCCCCCCEEEccCCCCC
Q psy3329 79 IEPGVFDPLTSLEYLMLNRCNLTYISPSAF-----DNLNHLKTLELSQNKLKSHI--DWTLVLGNLGKLDTLDLRQSGIS 151 (694)
Q Consensus 79 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~l~~~~--~~~~~~~~l~~L~~L~L~~n~i~ 151 (694)
..+..+..+++|++|++++|.+++..+..+ ...++|++|++++|.++..+ .++..+..+++|++|++++|.+.
T Consensus 104 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 183 (461)
T 1z7x_W 104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183 (461)
T ss_dssp HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcc
Confidence 335668899999999999999986544433 23678999999999988643 35667788999999999999987
Q ss_pred CCCccccC-----CCCCCcEEeCCCCCCCCcch---hhhcccCCCcccEEeCCCCCCCCCC----ChhhhhcCCCCcEEE
Q psy3329 152 NLPDNVFA-----NNTWLRNLNLAENELIDLDV---ATTLGQNLVHLDSLDLSNCHLKGPL----SEDAFVNATKLRTLY 219 (694)
Q Consensus 152 ~~~~~~~~-----~~~~L~~L~l~~n~l~~~~~---~~~~~~~~~~L~~L~l~~n~~~~~~----~~~~~~~~~~L~~L~ 219 (694)
......+. ..++|++|++++|.++.... ...+. .+++|++|++++|.+.+.. ....+..+++|+.|+
T Consensus 184 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~ 262 (461)
T 1z7x_W 184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA-SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW 262 (461)
T ss_dssp HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHH-HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred hHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHH-hCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEE
Confidence 55443332 36689999999999887542 22222 6899999999999874221 122233589999999
Q ss_pred cCCCCCCccc---hhhhccCCCCccEEEccCcCCCcCCccccc-----CCCCccEEeCCCCCCccc----chhhcCCCCC
Q psy3329 220 LSGNPLSAAD---LSVALKPLTKLHRLSLRNCGLSRLPANTFH-----RFTCLQELDISHNPLIDA----FTALLSPLES 287 (694)
Q Consensus 220 L~~n~l~~~~---~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~-----~~~~L~~L~L~~n~~~~~----~~~~~~~l~~ 287 (694)
+++|.++... ....+..+++|++|++++|.+++.....+. ..++|+.|++++|.+.+. ++..+..+++
T Consensus 263 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 342 (461)
T 1z7x_W 263 IWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRF 342 (461)
T ss_dssp CTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSS
T ss_pred CcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCC
Confidence 9999998754 233456789999999999998754433332 336999999999999875 5666778899
Q ss_pred CcEEECcCCCCcccChhhhcC-----CCCCcEEeccCCcccC----cCchhhcCCCCCCEEeCCCCCCcccCccccccC-
Q psy3329 288 LEHLDMGYSNLQRISRSTFLK-----MTSLKTLILSGNKLET----LESGLFQNLTHLSVLELNNCGLTRLNETVFHEN- 357 (694)
Q Consensus 288 L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~- 357 (694)
|++|++++|.++......+.. .++|+.|++++|.++. ..+..+..+++|++|++++|.++......+...
T Consensus 343 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l 422 (461)
T 1z7x_W 343 LLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 422 (461)
T ss_dssp CCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHH
T ss_pred ccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHh
Confidence 999999999998766554542 6899999999999985 445667889999999999999987533332210
Q ss_pred -CCCCCCCeeeCCCCCCc
Q psy3329 358 -YTYPDLEELRLSGNPLH 374 (694)
Q Consensus 358 -~~~~~L~~L~Ls~n~l~ 374 (694)
.....|+.|++.++.+.
T Consensus 423 ~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 423 RQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp TSTTCCCCEEECTTCCCC
T ss_pred ccCCcchhheeecccccC
Confidence 02457899999888764
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=3.8e-27 Score=251.58 Aligned_cols=248 Identities=25% Similarity=0.373 Sum_probs=200.2
Q ss_pred CcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECc
Q psy3329 215 LRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMG 294 (694)
Q Consensus 215 L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 294 (694)
...++..+..++.++.. -.++++.|++++|+++.+++..|..+++|+.|+|++|.+.+..+..|.++++|++|+|+
T Consensus 45 ~~~v~c~~~~l~~iP~~----~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDG----ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCSSCCSC----CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcCcCCCC----CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 45666666666655422 22677888888888888777778888888888888888888777788888888888888
Q ss_pred CCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCC-CCCcccCccccccCCCCCCCCeeeCCCCCC
Q psy3329 295 YSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNN-CGLTRLNETVFHENYTYPDLEELRLSGNPL 373 (694)
Q Consensus 295 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l 373 (694)
+|.++.+++..|..+++|++|+|++|.+..+++..|..+++|+.|++++ +.++.++...|. .+++|+.|++++|.+
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~---~l~~L~~L~L~~n~l 197 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE---GLSNLRYLNLAMCNL 197 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTT---TCSSCCEEECTTSCC
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhh---cccccCeecCCCCcC
Confidence 8888888877788888888888888888888887788888888888887 456667776676 788888888888888
Q ss_pred cCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCC
Q psy3329 374 HVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRC 453 (694)
Q Consensus 374 ~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n 453 (694)
+.++. +.. +++|+.|+|++|.++++.+..| ..+++|+.|+|++|
T Consensus 198 ~~~~~-------------------------------~~~---l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~n 241 (440)
T 3zyj_A 198 REIPN-------------------------------LTP---LIKLDELDLSGNHLSAIRPGSF--QGLMHLQKLWMIQS 241 (440)
T ss_dssp SSCCC-------------------------------CTT---CSSCCEEECTTSCCCEECTTTT--TTCTTCCEEECTTC
T ss_pred ccccc-------------------------------cCC---CcccCEEECCCCccCccChhhh--ccCccCCEEECCCC
Confidence 76542 122 7888999999999998888888 88899999999999
Q ss_pred cCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccc
Q psy3329 454 KIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTH 508 (694)
Q Consensus 454 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~ 508 (694)
+|+++++..|.++++|+.|+|++|+++++.+..| ..+++|+.|+|++|.+..
T Consensus 242 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 242 QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLF---TPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp CCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTT---SSCTTCCEEECCSSCEEC
T ss_pred ceeEEChhhhcCCCCCCEEECCCCCCCccChhHh---ccccCCCEEEcCCCCccC
Confidence 9999888888999999999999999998888777 788899999999998764
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=5e-27 Score=251.62 Aligned_cols=248 Identities=25% Similarity=0.331 Sum_probs=190.6
Q ss_pred CcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECc
Q psy3329 215 LRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMG 294 (694)
Q Consensus 215 L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 294 (694)
...++.++..++.++. .-.++++.|++++|+++.+++..|..+++|+.|+|++|.+.+..+..|.++++|++|+|+
T Consensus 56 ~~~v~c~~~~l~~iP~----~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQ----GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCSSCCS----CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcCccCC----CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 4456666666555442 122577778888887777777777778888888888888877777777788888888888
Q ss_pred CCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCC-CCCcccCccccccCCCCCCCCeeeCCCCCC
Q psy3329 295 YSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNN-CGLTRLNETVFHENYTYPDLEELRLSGNPL 373 (694)
Q Consensus 295 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l 373 (694)
+|.++.+++..|.++++|++|+|++|.++.+++..|..+++|+.|++++ +.++.++...|. .+++|+.|++++|.+
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~---~l~~L~~L~L~~n~l 208 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE---GLFNLKYLNLGMCNI 208 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTT---TCTTCCEEECTTSCC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhcc---CCCCCCEEECCCCcc
Confidence 8888877777777888888888888888877777778888888888887 456666666666 678888888888887
Q ss_pred cCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCC
Q psy3329 374 HVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRC 453 (694)
Q Consensus 374 ~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n 453 (694)
+.++. +.. +++|+.|++++|.++++.+..| ..+++|+.|+|++|
T Consensus 209 ~~~~~-------------------------------~~~---l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~n 252 (452)
T 3zyi_A 209 KDMPN-------------------------------LTP---LVGLEELEMSGNHFPEIRPGSF--HGLSSLKKLWVMNS 252 (452)
T ss_dssp SSCCC-------------------------------CTT---CTTCCEEECTTSCCSEECGGGG--TTCTTCCEEECTTS
T ss_pred ccccc-------------------------------ccc---cccccEEECcCCcCcccCcccc--cCccCCCEEEeCCC
Confidence 65542 112 7788888888888888888777 78888888888888
Q ss_pred cCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccc
Q psy3329 454 KIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTH 508 (694)
Q Consensus 454 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~ 508 (694)
.++++.+..|.++++|+.|+|++|+++++++..| ..+++|+.|+|++|.+..
T Consensus 253 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 253 QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLF---TPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSS---TTCTTCCEEECCSSCEEC
T ss_pred cCceECHHHhcCCCCCCEEECCCCcCCccChHHh---ccccCCCEEEccCCCcCC
Confidence 8888888888888888888888888888877777 778888888888887765
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.9e-27 Score=241.28 Aligned_cols=276 Identities=21% Similarity=0.298 Sum_probs=215.0
Q ss_pred cEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCccc--chhhcCCCCCCcEEEC
Q psy3329 216 RTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDA--FTALLSPLESLEHLDM 293 (694)
Q Consensus 216 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~--~~~~~~~l~~L~~L~L 293 (694)
+.++++++.++..+. ...++|++|++++|.++.++...|..+++|+.|++++|.+... .+..+..+++|++|++
T Consensus 10 ~~l~c~~~~l~~ip~----~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLTSVPT----GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCSSCCS----CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcccCCC----CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 456666666665543 1236788888888888888877788888888999888888743 2455667888999999
Q ss_pred cCCCCcccChhhhcCCCCCcEEeccCCcccCcCc-hhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCC
Q psy3329 294 GYSNLQRISRSTFLKMTSLKTLILSGNKLETLES-GLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNP 372 (694)
Q Consensus 294 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~ 372 (694)
++|.+..++. .+..+++|++|++++|.++++.+ ..+..+++|+.|++++|.++.+.+..+. .+++|++|++++|.
T Consensus 86 s~n~i~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~---~l~~L~~L~l~~n~ 161 (306)
T 2z66_A 86 SFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN---GLSSLEVLKMAGNS 161 (306)
T ss_dssp CSCSEEEEEE-EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTT---TCTTCCEEECTTCE
T ss_pred CCCccccChh-hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcc---cCcCCCEEECCCCc
Confidence 9998887654 47788999999999999888776 5688889999999999998887777776 78899999999998
Q ss_pred CcCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccC
Q psy3329 373 LHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSR 452 (694)
Q Consensus 373 l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~ 452 (694)
++.. .+|.. +.. +++|+.|++++|.++++++..+ ..+++|+.|+|++
T Consensus 162 l~~~----------~~~~~------------------~~~---l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~ 208 (306)
T 2z66_A 162 FQEN----------FLPDI------------------FTE---LRNLTFLDLSQCQLEQLSPTAF--NSLSSLQVLNMSH 208 (306)
T ss_dssp EGGG----------EECSC------------------CTT---CTTCCEEECTTSCCCEECTTTT--TTCTTCCEEECTT
T ss_pred cccc----------cchhH------------------Hhh---CcCCCEEECCCCCcCCcCHHHh--cCCCCCCEEECCC
Confidence 7530 11111 223 8899999999999999988888 8899999999999
Q ss_pred CcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhccc-CCCcEEECCCCcccccCh--hhhcCCCcccEEEccCCc
Q psy3329 453 CKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVL-LELESLDLSNNNLTHISP--TVLRHNRAITSIKLVGNP 529 (694)
Q Consensus 453 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l-~~L~~L~ls~N~l~~~~~--~~~~~~~~l~~l~l~~N~ 529 (694)
|.++++++..+..+++|+.|+|++|++++..+..+ ..+ ++|+.|+|++|.+++..+ .....+...+.+.+..+.
T Consensus 209 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~---~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~ 285 (306)
T 2z66_A 209 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL---QHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVER 285 (306)
T ss_dssp SCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC---CCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGG
T ss_pred CccCccChhhccCcccCCEeECCCCCCcccCHHHH---HhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccc
Confidence 99999998889999999999999999999988877 677 499999999999987432 222223334445556677
Q ss_pred cccccC
Q psy3329 530 WKCDCN 535 (694)
Q Consensus 530 ~~c~c~ 535 (694)
+.|.-+
T Consensus 286 ~~C~~p 291 (306)
T 2z66_A 286 MECATP 291 (306)
T ss_dssp CBEEES
T ss_pred cccCCc
Confidence 777543
No 56
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.95 E-value=1.1e-26 Score=232.59 Aligned_cols=215 Identities=31% Similarity=0.409 Sum_probs=156.5
Q ss_pred CCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCC
Q psy3329 284 PLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDL 363 (694)
Q Consensus 284 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L 363 (694)
.++++++++++++.++.++... .++++.|+|++|.++++.+..|..+++|+.|++++|.++.++.. . .+++|
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~---~l~~L 79 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--G---TLPVL 79 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--S---CCTTC
T ss_pred ccCCccEEECCCCCCCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--C---CCCcC
Confidence 3344444444444444443221 13455555555555555555555555555555555555554332 1 45666
Q ss_pred CeeeCCCCCCcCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCC
Q psy3329 364 EELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLS 443 (694)
Q Consensus 364 ~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~ 443 (694)
+.|++++|+++.++.. +.+ +++|+.|++++|.++++++..| ..++
T Consensus 80 ~~L~Ls~N~l~~l~~~------------------------------~~~---l~~L~~L~l~~N~l~~l~~~~~--~~l~ 124 (290)
T 1p9a_G 80 GTLDLSHNQLQSLPLL------------------------------GQT---LPALTVLDVSFNRLTSLPLGAL--RGLG 124 (290)
T ss_dssp CEEECCSSCCSSCCCC------------------------------TTT---CTTCCEEECCSSCCCCCCSSTT--TTCT
T ss_pred CEEECCCCcCCcCchh------------------------------hcc---CCCCCEEECCCCcCcccCHHHH--cCCC
Confidence 6666666666543320 112 7788889999999998888888 8899
Q ss_pred CccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEE
Q psy3329 444 RLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSI 523 (694)
Q Consensus 444 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l 523 (694)
+|+.|+|++|+|+++++..|..+++|+.|+|++|+++++++..| ..+++|+.|+|++|+++.+++. +....+|+.+
T Consensus 125 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~---~~l~~L~~L~L~~N~l~~ip~~-~~~~~~L~~l 200 (290)
T 1p9a_G 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLL---NGLENLDTLLLQENSLYTIPKG-FFGSHLLPFA 200 (290)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTT---TTCTTCCEEECCSSCCCCCCTT-TTTTCCCSEE
T ss_pred CCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHh---cCcCCCCEEECCCCcCCccChh-hcccccCCeE
Confidence 99999999999999999999999999999999999998888777 7899999999999999976555 4456789999
Q ss_pred EccCCccccccCcHHHHHHHHh
Q psy3329 524 KLVGNPWKCDCNIADMWEWATR 545 (694)
Q Consensus 524 ~l~~N~~~c~c~~~~~~~~~~~ 545 (694)
++++|||.|+|.+.|+..|+..
T Consensus 201 ~L~~Np~~C~c~~~~l~~wl~~ 222 (290)
T 1p9a_G 201 FLHGNPWLCNCEILYFRRWLQD 222 (290)
T ss_dssp ECCSCCBCCSGGGHHHHHHHHH
T ss_pred EeCCCCccCcCccHHHHHHHHh
Confidence 9999999999999999999986
No 57
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.95 E-value=1.7e-26 Score=229.39 Aligned_cols=195 Identities=35% Similarity=0.576 Sum_probs=145.7
Q ss_pred CCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccc
Q psy3329 311 SLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPT 390 (694)
Q Consensus 311 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~ 390 (694)
+++.|+|++|.+..+++..|..+++|++|++++|.++.++...|. .+++|++|++++|+++.++.
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~---~l~~L~~L~l~~n~l~~~~~------------ 102 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFK---ELKNLETLWVTDNKLQALPI------------ 102 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTS---SCTTCCEEECCSSCCCCCCT------------
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhc---CCCCCCEEECCCCcCCcCCH------------
Confidence 344444444444444444444444555555555554444444443 44555555555555443321
Q ss_pred hhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCC
Q psy3329 391 QIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNIT 470 (694)
Q Consensus 391 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 470 (694)
.. |.. +++|+.|++++|.++++++..| ..+++|+.|+|++|.|+++++..|..+++|+
T Consensus 103 ~~-----------------~~~---l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 160 (270)
T 2o6q_A 103 GV-----------------FDQ---LVNLAELRLDRNQLKSLPPRVF--DSLTKLTYLSLGYNELQSLPKGVFDKLTSLK 160 (270)
T ss_dssp TT-----------------TTT---CSSCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hH-----------------ccc---ccCCCEEECCCCccCeeCHHHh--CcCcCCCEEECCCCcCCccCHhHccCCcccc
Confidence 00 222 6778888888888888888777 8899999999999999999998899999999
Q ss_pred EEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEEEccCCccccccC-cHHHHHHHHh
Q psy3329 471 SLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCN-IADMWEWATR 545 (694)
Q Consensus 471 ~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~-~~~~~~~~~~ 545 (694)
.|+|++|+++++.+..| ..+++|++|+|++|+++++++..+..+++|+.+++++|||.|+|+ +.|+..|+..
T Consensus 161 ~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~l~~ 233 (270)
T 2o6q_A 161 ELRLYNNQLKRVPEGAF---DKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLKK 233 (270)
T ss_dssp EEECCSSCCSCCCTTTT---TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSSSHHHHHHHHH
T ss_pred eeEecCCcCcEeChhHh---ccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCccHHHHHHHHHh
Confidence 99999999999888777 889999999999999999988889999999999999999999998 7889999876
No 58
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=2.6e-29 Score=279.93 Aligned_cols=429 Identities=13% Similarity=0.061 Sum_probs=247.5
Q ss_pred hhhhcCCCCcEEEccCCcCC---ccChhh------------ccCCCCCCeEECCCCCCCccCCCCCCC-CCC-CCEEeCC
Q psy3329 34 GAFLVARSLLYLYMQECTLS---KINPQF------------FTNLTTLNKLDLSGNPLRIIEPGVFDP-LTS-LEYLMLN 96 (694)
Q Consensus 34 ~~~~~~~~L~~L~l~~n~l~---~~~~~~------------~~~l~~L~~L~Ls~n~~~~~~~~~~~~-l~~-L~~L~L~ 96 (694)
..+..+++|++|++++|... +..|.. ...+++|++|+|++|.++......+.. +++ |++|+++
T Consensus 67 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~ 146 (592)
T 3ogk_B 67 RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLD 146 (592)
T ss_dssp HHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEE
T ss_pred HHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECc
Confidence 55566677777777654210 111111 125677777777777665433332333 233 7777777
Q ss_pred CCc-CCcc-ChhhhcCCCCCCEEECCCCcCCccch--hhhhhcCCCCCCEEEccCCCCCCCCcc----ccCCCCCCcEEe
Q psy3329 97 RCN-LTYI-SPSAFDNLNHLKTLELSQNKLKSHID--WTLVLGNLGKLDTLDLRQSGISNLPDN----VFANNTWLRNLN 168 (694)
Q Consensus 97 ~n~-l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~~l~~L~~L~L~~n~i~~~~~~----~~~~~~~L~~L~ 168 (694)
+|. +... .+....++++|++|++++|.+.+.+. ++....++++|++|++++|.++.+... .+.++++|++|+
T Consensus 147 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~ 226 (592)
T 3ogk_B 147 KCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVK 226 (592)
T ss_dssp SCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEE
T ss_pred CCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEe
Confidence 765 1111 11223466777777777776654321 334455677777777777777644332 234667777777
Q ss_pred CCCCCCCCcchhhhcccCCCcccEEeCCCCCCC---CCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEc
Q psy3329 169 LAENELIDLDVATTLGQNLVHLDSLDLSNCHLK---GPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSL 245 (694)
Q Consensus 169 l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~---~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l 245 (694)
+++|.+.++. .... .+++|++|+++.+... ... ...+..+++|+.|+++++.... ....+..+++|++|++
T Consensus 227 L~~~~~~~l~--~~~~-~~~~L~~L~l~~~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~--l~~~~~~~~~L~~L~L 300 (592)
T 3ogk_B 227 VGDFEILELV--GFFK-AAANLEEFCGGSLNEDIGMPEK-YMNLVFPRKLCRLGLSYMGPNE--MPILFPFAAQIRKLDL 300 (592)
T ss_dssp CSSCBGGGGH--HHHH-HCTTCCEEEECBCCCCTTCTTS-SSCCCCCTTCCEEEETTCCTTT--GGGGGGGGGGCCEEEE
T ss_pred ccCccHHHHH--HHHh-hhhHHHhhcccccccccchHHH-HHHhhccccccccCccccchhH--HHHHHhhcCCCcEEec
Confidence 7777665533 2222 5677777777653221 111 1235567788888887753322 2234466778888888
Q ss_pred cCcCCCcCCc-ccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcC-----------CCCcccChh-hhcCCCCC
Q psy3329 246 RNCGLSRLPA-NTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGY-----------SNLQRISRS-TFLKMTSL 312 (694)
Q Consensus 246 ~~n~i~~~~~-~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~-----------n~l~~~~~~-~~~~l~~L 312 (694)
++|.++.... ..+..+++|+.|+++++...+.++.....+++|++|++++ +.++..... .+.++++|
T Consensus 301 s~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L 380 (592)
T 3ogk_B 301 LYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQEL 380 (592)
T ss_dssp TTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTC
T ss_pred CCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccC
Confidence 8887654322 2356788888888883322233444445678888888883 455543222 24568899
Q ss_pred cEEeccCCcccCcCchhhcC-CCCCCEEeCC----CCCCcccCcc-----ccccCCCCCCCCeeeCCCCCCcCCCCcccc
Q psy3329 313 KTLILSGNKLETLESGLFQN-LTHLSVLELN----NCGLTRLNET-----VFHENYTYPDLEELRLSGNPLHVLPDSTKQ 382 (694)
Q Consensus 313 ~~L~L~~n~l~~~~~~~l~~-l~~L~~L~L~----~n~l~~~~~~-----~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 382 (694)
++|+++.|.+++.....+.. +++|+.|+++ .|.+++.+.. .+. .+++|+.|++++|.
T Consensus 381 ~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~---~~~~L~~L~L~~~~---------- 447 (592)
T 3ogk_B 381 EYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLI---GCKKLRRFAFYLRQ---------- 447 (592)
T ss_dssp SEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHH---HCTTCCEEEEECCG----------
T ss_pred eEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHH---hCCCCCEEEEecCC----------
Confidence 99999888887665555544 8889999996 5667664321 122 34555555554322
Q ss_pred cccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCc-cCCC
Q psy3329 383 YSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDY-LPPN 461 (694)
Q Consensus 383 ~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~ 461 (694)
+.+++.....+ ...+++|+.|+|++|.+++ ..+.
T Consensus 448 --------------------------------------------~~l~~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~ 482 (592)
T 3ogk_B 448 --------------------------------------------GGLTDLGLSYI-GQYSPNVRWMLLGYVGESDEGLME 482 (592)
T ss_dssp --------------------------------------------GGCCHHHHHHH-HHSCTTCCEEEECSCCSSHHHHHH
T ss_pred --------------------------------------------CCccHHHHHHH-HHhCccceEeeccCCCCCHHHHHH
Confidence 01221111111 0235677777777777765 2233
Q ss_pred CCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccChhh-hcCCCcccEEEccCC
Q psy3329 462 VFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTV-LRHNRAITSIKLVGN 528 (694)
Q Consensus 462 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~-~~~~~~l~~l~l~~N 528 (694)
.+.++++|++|+|++|.+++.....+ ...+++|+.|+|++|+++...... ...++.+....+..+
T Consensus 483 ~~~~~~~L~~L~l~~n~l~~~~~~~~--~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 483 FSRGCPNLQKLEMRGCCFSERAIAAA--VTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HHTCCTTCCEEEEESCCCBHHHHHHH--HHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred HHhcCcccCeeeccCCCCcHHHHHHH--HHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 34667888888888888764322222 256788888888888887653332 234566665555443
No 59
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=5.4e-28 Score=245.33 Aligned_cols=232 Identities=21% Similarity=0.232 Sum_probs=141.1
Q ss_pred cCCCCccEEEccC-cCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCc
Q psy3329 235 KPLTKLHRLSLRN-CGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLK 313 (694)
Q Consensus 235 ~~l~~L~~L~l~~-n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 313 (694)
..+++|++|++++ |.+.+..+..+..+++|++|++++|.+.+.+|..+..+++|++|+|++|.+++..+..+..+++|+
T Consensus 73 ~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 152 (313)
T 1ogq_A 73 ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV 152 (313)
T ss_dssp GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCC
T ss_pred hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCC
Confidence 4445555555552 444433334455555555555555555555555555555555555555555544445555555555
Q ss_pred EEeccCCcccCcCchhhcCCC-CCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchh
Q psy3329 314 TLILSGNKLETLESGLFQNLT-HLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQI 392 (694)
Q Consensus 314 ~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~ 392 (694)
+|++++|.+++..+..+..++ +|+.|++++|.+++..+..+. .+. |+.|++++|.++... |..
T Consensus 153 ~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~---~l~-L~~L~Ls~N~l~~~~-----------~~~- 216 (313)
T 1ogq_A 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA---NLN-LAFVDLSRNMLEGDA-----------SVL- 216 (313)
T ss_dssp EEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG---GCC-CSEEECCSSEEEECC-----------GGG-
T ss_pred eEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHh---CCc-ccEEECcCCcccCcC-----------CHH-
Confidence 555555555544444455554 555555555555543333333 233 666666665554221 111
Q ss_pred ccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEE
Q psy3329 393 WKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSL 472 (694)
Q Consensus 393 ~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 472 (694)
+.. +++|+.|++++|.+++..+. + ..+++|++|+|++|.|++..|..|..+++|+.|
T Consensus 217 -----------------~~~---l~~L~~L~L~~N~l~~~~~~-~--~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 273 (313)
T 1ogq_A 217 -----------------FGS---DKNTQKIHLAKNSLAFDLGK-V--GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273 (313)
T ss_dssp -----------------CCT---TSCCSEEECCSSEECCBGGG-C--CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEE
T ss_pred -----------------Hhc---CCCCCEEECCCCceeeecCc-c--cccCCCCEEECcCCcccCcCChHHhcCcCCCEE
Confidence 122 66777777777777765554 4 567888888888888888778888888889999
Q ss_pred EccCCccCCCcchhhhhhcccCCCcEEECCCCc-cccc
Q psy3329 473 NLANNNLSMTSELSFQFLDVLLELESLDLSNNN-LTHI 509 (694)
Q Consensus 473 ~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~-l~~~ 509 (694)
+|++|++++.+|.. ..+++|+.+++++|. +.|.
T Consensus 274 ~Ls~N~l~~~ip~~----~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 274 NVSFNNLCGEIPQG----GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp ECCSSEEEEECCCS----TTGGGSCGGGTCSSSEEEST
T ss_pred ECcCCcccccCCCC----ccccccChHHhcCCCCccCC
Confidence 99999888877764 577888888898887 5543
No 60
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=2.9e-27 Score=244.89 Aligned_cols=282 Identities=20% Similarity=0.229 Sum_probs=158.6
Q ss_pred CCCceEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeC
Q psy3329 16 NPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLML 95 (694)
Q Consensus 16 ~~~L~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L 95 (694)
|+.....+++++.++.+|..+. ++|++|++++|.++.+.+..|.++++|++|++++|.++.+.+..|.++++|++|++
T Consensus 30 C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107 (353)
T ss_dssp ECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEEC
Confidence 3444456666666666664332 46666666666666665556666666666666666666666666666666666666
Q ss_pred CCCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCC-CCCCCCccccCCCCCCcEEeCCCCCC
Q psy3329 96 NRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQS-GISNLPDNVFANNTWLRNLNLAENEL 174 (694)
Q Consensus 96 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l 174 (694)
++|.++++++..+.++++|++|++++|.+..+.. ...+.++++|++|++++| .+..+++..+..++
T Consensus 108 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~------------ 174 (353)
T 2z80_A 108 SYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGE-TSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLT------------ 174 (353)
T ss_dssp CSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCS-SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC------------
T ss_pred CCCcCCcCCHhHhCCCccCCEEECCCCCCcccCc-hhhhccCCCCcEEECCCCccccccCHHHccCCC------------
Confidence 6666666655556666666666666666553221 013455566666666655 34444444444444
Q ss_pred CCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCC
Q psy3329 175 IDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLP 254 (694)
Q Consensus 175 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~ 254 (694)
+|++|++++|.+.+. .+..+..+++|++|++++|.+...... .+..+++|+.|++++|.+++++
T Consensus 175 --------------~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~L~~n~l~~~~ 238 (353)
T 2z80_A 175 --------------FLEELEIDASDLQSY-EPKSLKSIQNVSHLILHMKQHILLLEI-FVDVTSSVECLELRDTDLDTFH 238 (353)
T ss_dssp --------------EEEEEEEEETTCCEE-CTTTTTTCSEEEEEEEECSCSTTHHHH-HHHHTTTEEEEEEESCBCTTCC
T ss_pred --------------CCCEEECCCCCcCcc-CHHHHhccccCCeecCCCCccccchhh-hhhhcccccEEECCCCcccccc
Confidence 455555555554322 223466777778888877777554432 3355778888888888777665
Q ss_pred ccccc---CCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhc
Q psy3329 255 ANTFH---RFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQ 331 (694)
Q Consensus 255 ~~~~~---~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 331 (694)
...+. ..+.++.++++++.+.+. .+. ..+..+..+++|+.|++++|+++.++...|.
T Consensus 239 ~~~l~~~~~~~~l~~l~L~~~~l~~~-------------------~l~-~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~ 298 (353)
T 2z80_A 239 FSELSTGETNSLIKKFTFRNVKITDE-------------------SLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFD 298 (353)
T ss_dssp CC------CCCCCCEEEEESCBCCHH-------------------HHH-HHHHHHHTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred ccccccccccchhhccccccccccCc-------------------chh-hhHHHHhcccCCCEEECCCCCCCccCHHHHh
Confidence 33322 233445555555544431 000 1123344555555555555555555544455
Q ss_pred CCCCCCEEeCCCCCCcc
Q psy3329 332 NLTHLSVLELNNCGLTR 348 (694)
Q Consensus 332 ~l~~L~~L~L~~n~l~~ 348 (694)
.+++|+.|++++|.++.
T Consensus 299 ~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 299 RLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp TCTTCCEEECCSSCBCC
T ss_pred cCCCCCEEEeeCCCccC
Confidence 55555555555555544
No 61
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.95 E-value=7.6e-27 Score=232.91 Aligned_cols=235 Identities=25% Similarity=0.417 Sum_probs=162.1
Q ss_pred EEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcc
Q psy3329 243 LSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKL 322 (694)
Q Consensus 243 L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 322 (694)
++..+.++..+|.. + .++|++|++++|.+.+..+..+..+++|++|++++|.++.+.+..|.++++|++|+|++|.+
T Consensus 12 ~~c~~~~l~~ip~~-l--~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 12 YQCMELNFYKIPDN-L--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EECTTSCCSSCCSS-S--CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEecCCCccccCCC-C--CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 33444445555432 1 13566666666666665555566666666666666666666655666666666666666666
Q ss_pred cCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhh
Q psy3329 323 ETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVIL 402 (694)
Q Consensus 323 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~ 402 (694)
+++.+..|..+++|++|++++|.++.++...+. .
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~---~------------------------------------------- 122 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIG---H------------------------------------------- 122 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCT---T-------------------------------------------
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcc---c-------------------------------------------
Confidence 666655566666666666666665554443332 2
Q ss_pred hhhcccccccCCCCCCCceEEcCCCCCcccC-CCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCC----EEEccCC
Q psy3329 403 FILNETVFHENYTYPDLEELRLSGNPLHVLP-TGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNIT----SLNLANN 477 (694)
Q Consensus 403 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~----~L~L~~N 477 (694)
+++|++|++++|.++++. +..+ ..+++|+.|+|++|.++++++..+..+++|+ .|++++|
T Consensus 123 -------------l~~L~~L~l~~n~l~~~~l~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 123 -------------LKTLKELNVAHNLIQSFKLPEYF--SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp -------------CTTCCEEECCSSCCCCCCCCGGG--GGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred -------------CCCCCEEECcCCccceecCchhh--ccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 455556666666655543 4445 6778888888888888887777776666666 8889999
Q ss_pred ccCCCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEEEccCCccccccC-cHHHHHHHHh
Q psy3329 478 NLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCN-IADMWEWATR 545 (694)
Q Consensus 478 ~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~-~~~~~~~~~~ 545 (694)
+++++.+..+ . ..+|+.|++++|+++++++..+..+++|+.+++++|+|.|+|+ +.|+..|...
T Consensus 188 ~l~~~~~~~~---~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~l~~~~~~ 252 (276)
T 2z62_A 188 PMNFIQPGAF---K-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 252 (276)
T ss_dssp CCCEECTTSS---C-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTHHHHHHHHH
T ss_pred cccccCcccc---C-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchHHHHHHHHh
Confidence 9888777665 3 3489999999999999888888999999999999999999997 7889999876
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=8.2e-27 Score=233.87 Aligned_cols=225 Identities=27% Similarity=0.345 Sum_probs=158.4
Q ss_pred cEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcC
Q psy3329 216 RTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGY 295 (694)
Q Consensus 216 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~ 295 (694)
+.++.+++.++.++. ...++|++|++++|.++.+++..|..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 14 ~~~~c~~~~l~~ip~----~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV----GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSSCCT----TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcccCCc----CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 566777776666542 2246888888888888888877888888999999999988888788888899999999999
Q ss_pred CC-CcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCc
Q psy3329 296 SN-LQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLH 374 (694)
Q Consensus 296 n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 374 (694)
|. ++.+.+..|..+++|++|++++|.++++.+..+..+++|++|++++|+++.++...+. .+++|+.|++++|.+
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~---~l~~L~~L~l~~n~l- 165 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR---DLGNLTHLFLHGNRI- 165 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT---TCTTCCEEECCSSCC-
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhc---cCCCccEEECCCCcc-
Confidence 96 8888788888999999999999999988888888899999999999988887766554 455555555555544
Q ss_pred CCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCc
Q psy3329 375 VLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCK 454 (694)
Q Consensus 375 ~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~ 454 (694)
+++++..+ ..+++|+.|+|++|.
T Consensus 166 -------------------------------------------------------~~~~~~~~--~~l~~L~~L~l~~n~ 188 (285)
T 1ozn_A 166 -------------------------------------------------------SSVPERAF--RGLHSLDRLLLHQNR 188 (285)
T ss_dssp -------------------------------------------------------CEECTTTT--TTCTTCCEEECCSSC
T ss_pred -------------------------------------------------------cccCHHHh--cCccccCEEECCCCc
Confidence 44333333 445555555555555
Q ss_pred CCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccc
Q psy3329 455 IDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTH 508 (694)
Q Consensus 455 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~ 508 (694)
++++.+..|..+++|+.|++++|+++++++..+ ..+++|+.|++++|.+..
T Consensus 189 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 189 VAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL---APLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHH---TTCTTCCEEECCSSCEEC
T ss_pred ccccCHhHccCcccccEeeCCCCcCCcCCHHHc---ccCcccCEEeccCCCccC
Confidence 555555555555555555555555555444444 445555555555555544
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=2.4e-25 Score=244.16 Aligned_cols=266 Identities=26% Similarity=0.295 Sum_probs=143.4
Q ss_pred CCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcE
Q psy3329 138 GKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRT 217 (694)
Q Consensus 138 ~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 217 (694)
.+++.|++++|.++.++.... ++|++|++++|.++.++. .+++|++|++++|.+ ..++. .+++|++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~---~~L~~L~L~~N~l~~lp~------~l~~L~~L~Ls~N~l-~~lp~----~l~~L~~ 105 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTSLPA------LPPELRTLEVSGNQL-TSLPV----LPPGLLE 105 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC---TTCSEEEECSCCCSCCCC------CCTTCCEEEECSCCC-SCCCC----CCTTCCE
T ss_pred CCCcEEEecCCCcCccChhhC---CCCcEEEecCCCCCCCCC------cCCCCCEEEcCCCcC-CcCCC----CCCCCCE
Confidence 358888888888887776432 677777777777665432 345566666666655 33432 3455555
Q ss_pred EEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCC
Q psy3329 218 LYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSN 297 (694)
Q Consensus 218 L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 297 (694)
|++++|.++..+. .+++|+.|++++|+++.++. .+++|++|+|++|.
T Consensus 106 L~Ls~N~l~~l~~-----~l~~L~~L~L~~N~l~~lp~----------------------------~l~~L~~L~Ls~N~ 152 (622)
T 3g06_A 106 LSIFSNPLTHLPA-----LPSGLCKLWIFGNQLTSLPV----------------------------LPPGLQELSVSDNQ 152 (622)
T ss_dssp EEECSCCCCCCCC-----CCTTCCEEECCSSCCSCCCC----------------------------CCTTCCEEECCSSC
T ss_pred EECcCCcCCCCCC-----CCCCcCEEECCCCCCCcCCC----------------------------CCCCCCEEECcCCc
Confidence 5555555544321 23445555555555444432 12444444444444
Q ss_pred CcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCC
Q psy3329 298 LQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLP 377 (694)
Q Consensus 298 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 377 (694)
+++++. .+++|+.|++++|.++.++ ..+++|+.|++++|.++.++. ..++|+.|++++|.++.++
T Consensus 153 l~~l~~----~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~l~~-------~~~~L~~L~L~~N~l~~l~ 217 (622)
T 3g06_A 153 LASLPA----LPSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLASLPT-------LPSELYKLWAYNNRLTSLP 217 (622)
T ss_dssp CSCCCC----CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC-------CCTTCCEEECCSSCCSSCC
T ss_pred CCCcCC----ccCCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCCCCCCC-------ccchhhEEECcCCcccccC
Confidence 444331 2344555555555555443 223555555555555554432 2345555555555554332
Q ss_pred CcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCc
Q psy3329 378 DSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDY 457 (694)
Q Consensus 378 ~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 457 (694)
.. +++|+.|++++|.+++++ ..+++|+.|+|++|.|+.
T Consensus 218 ~~------------------------------------~~~L~~L~Ls~N~L~~lp------~~l~~L~~L~Ls~N~L~~ 255 (622)
T 3g06_A 218 AL------------------------------------PSGLKELIVSGNRLTSLP------VLPSELKELMVSGNRLTS 255 (622)
T ss_dssp CC------------------------------------CTTCCEEECCSSCCSCCC------CCCTTCCEEECCSSCCSC
T ss_pred CC------------------------------------CCCCCEEEccCCccCcCC------CCCCcCcEEECCCCCCCc
Confidence 10 345666666666665543 224566666666666665
Q ss_pred cCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccChhhhc
Q psy3329 458 LPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLR 515 (694)
Q Consensus 458 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~ 515 (694)
+++ .+++|+.|+|++|+|+.+ |..+ ..+++|+.|+|++|.+++.+|..+.
T Consensus 256 lp~----~~~~L~~L~Ls~N~L~~l-p~~l---~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 256 LPM----LPSGLLSLSVYRNQLTRL-PESL---IHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp CCC----CCTTCCEEECCSSCCCSC-CGGG---GGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred CCc----ccccCcEEeCCCCCCCcC-CHHH---hhccccCEEEecCCCCCCcCHHHHH
Confidence 554 345666666666666633 3344 5566666666666666665555443
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=4.6e-25 Score=241.96 Aligned_cols=259 Identities=27% Similarity=0.287 Sum_probs=216.9
Q ss_pred cccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEe
Q psy3329 189 HLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELD 268 (694)
Q Consensus 189 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ 268 (694)
+++.|++++|.+ ..+|.. + .++|+.|++++|.++.++. .+++|++|++++|.++.++. .+++|++|+
T Consensus 41 ~l~~L~ls~n~L-~~lp~~-l--~~~L~~L~L~~N~l~~lp~-----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~ 107 (622)
T 3g06_A 41 GNAVLNVGESGL-TTLPDC-L--PAHITTLVIPDNNLTSLPA-----LPPELRTLEVSGNQLTSLPV----LPPGLLELS 107 (622)
T ss_dssp CCCEEECCSSCC-SCCCSC-C--CTTCSEEEECSCCCSCCCC-----CCTTCCEEEECSCCCSCCCC----CCTTCCEEE
T ss_pred CCcEEEecCCCc-CccChh-h--CCCCcEEEecCCCCCCCCC-----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEE
Confidence 477888888887 466643 2 2789999999998886542 56899999999999998875 678999999
Q ss_pred CCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcc
Q psy3329 269 ISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTR 348 (694)
Q Consensus 269 L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 348 (694)
+++|.+.+... .+++|+.|++++|.++.++. .+++|++|+|++|.+++++. .+.+|+.|++++|.++.
T Consensus 108 Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 108 IFSNPLTHLPA----LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTS 175 (622)
T ss_dssp ECSCCCCCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC
T ss_pred CcCCcCCCCCC----CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCCCcCC----ccCCCCEEECCCCCCCC
Confidence 99999887544 56889999999999998774 35899999999999998764 35799999999999999
Q ss_pred cCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCC
Q psy3329 349 LNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNP 428 (694)
Q Consensus 349 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 428 (694)
++ . .+++|+.|++++|.++.++.. +++|+.|++++|.
T Consensus 176 l~----~---~~~~L~~L~Ls~N~l~~l~~~------------------------------------~~~L~~L~L~~N~ 212 (622)
T 3g06_A 176 LP----M---LPSGLQELSVSDNQLASLPTL------------------------------------PSELYKLWAYNNR 212 (622)
T ss_dssp CC----C---CCTTCCEEECCSSCCSCCCCC------------------------------------CTTCCEEECCSSC
T ss_pred Cc----c---cCCCCcEEECCCCCCCCCCCc------------------------------------cchhhEEECcCCc
Confidence 87 1 578999999999999865531 6789999999999
Q ss_pred CcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccc
Q psy3329 429 LHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTH 508 (694)
Q Consensus 429 l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~ 508 (694)
++.++. .+++|+.|+|++|.|++++ ..+++|+.|+|++|+|+.+++ .+++|+.|+|++|+|+.
T Consensus 213 l~~l~~------~~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp~-------~~~~L~~L~Ls~N~L~~ 275 (622)
T 3g06_A 213 LTSLPA------LPSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPM-------LPSGLLSLSVYRNQLTR 275 (622)
T ss_dssp CSSCCC------CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC-------CCTTCCEEECCSSCCCS
T ss_pred ccccCC------CCCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCCc-------ccccCcEEeCCCCCCCc
Confidence 997663 3578999999999999977 456899999999999997554 46799999999999996
Q ss_pred cChhhhcCCCcccEEEccCCccccc
Q psy3329 509 ISPTVLRHNRAITSIKLVGNPWKCD 533 (694)
Q Consensus 509 ~~~~~~~~~~~l~~l~l~~N~~~c~ 533 (694)
+ |..+..+++|+.|++++|++.+.
T Consensus 276 l-p~~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 276 L-PESLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp C-CGGGGGSCTTCEEECCSCCCCHH
T ss_pred C-CHHHhhccccCEEEecCCCCCCc
Confidence 5 56789999999999999999853
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=7.7e-27 Score=237.54 Aligned_cols=247 Identities=21% Similarity=0.251 Sum_probs=154.9
Q ss_pred cEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCC
Q psy3329 241 HRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGN 320 (694)
Q Consensus 241 ~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 320 (694)
+..+++.+.+...+...+..+++|++|++++|.+.+..+..+..+++|++|+|++|.++++.+ +..+++|++|++++|
T Consensus 13 ~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN 90 (317)
T ss_dssp EEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS
T ss_pred eEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC
Confidence 333444444443333334444555555555555555555555555666666666665555443 555666666666666
Q ss_pred cccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhh
Q psy3329 321 KLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLV 400 (694)
Q Consensus 321 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~ 400 (694)
.++++++ .++|+.|++++|.++.++.. .+++|+.|++++|+++.++.. .
T Consensus 91 ~l~~l~~-----~~~L~~L~l~~n~l~~~~~~------~~~~L~~L~l~~N~l~~~~~~-----------~--------- 139 (317)
T 3o53_A 91 YVQELLV-----GPSIETLHAANNNISRVSCS------RGQGKKNIYLANNKITMLRDL-----------D--------- 139 (317)
T ss_dssp EEEEEEE-----CTTCCEEECCSSCCSEEEEC------CCSSCEEEECCSSCCCSGGGB-----------C---------
T ss_pred ccccccC-----CCCcCEEECCCCccCCcCcc------ccCCCCEEECCCCCCCCccch-----------h---------
Confidence 6555432 25666666666666655433 245566666666666533210 0
Q ss_pred hhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccC
Q psy3329 401 ILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLS 480 (694)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 480 (694)
+.. +++|+.|++++|.++++.+..+. ..+++|++|+|++|.|++++.. ..+++|++|+|++|+++
T Consensus 140 ---------~~~---l~~L~~L~Ls~N~l~~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~--~~l~~L~~L~Ls~N~l~ 204 (317)
T 3o53_A 140 ---------EGC---RSRVQYLDLKLNEIDTVNFAELA-ASSDTLEHLNLQYNFIYDVKGQ--VVFAKLKTLDLSSNKLA 204 (317)
T ss_dssp ---------TGG---GSSEEEEECTTSCCCEEEGGGGG-GGTTTCCEEECTTSCCCEEECC--CCCTTCCEEECCSSCCC
T ss_pred ---------hhc---cCCCCEEECCCCCCCcccHHHHh-hccCcCCEEECCCCcCcccccc--cccccCCEEECCCCcCC
Confidence 112 56777777777777776555441 3577888888888888877543 34788888888888888
Q ss_pred CCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEEEccCCccccccCcHHHH
Q psy3329 481 MTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMW 540 (694)
Q Consensus 481 ~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~~~~~~ 540 (694)
++++. + ..+++|+.|++++|++++++ ..+..+++|+.+++++|++.|+|...++.
T Consensus 205 ~l~~~-~---~~l~~L~~L~L~~N~l~~l~-~~~~~l~~L~~L~l~~N~~~~~~~~~~~~ 259 (317)
T 3o53_A 205 FMGPE-F---QSAAGVTWISLRNNKLVLIE-KALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (317)
T ss_dssp EECGG-G---GGGTTCSEEECTTSCCCEEC-TTCCCCTTCCEEECTTCCCBHHHHHHHHH
T ss_pred cchhh-h---cccCcccEEECcCCcccchh-hHhhcCCCCCEEEccCCCccCcCHHHHHh
Confidence 76554 5 67788888888888888654 45677888888888888888877655543
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=2.4e-26 Score=247.41 Aligned_cols=124 Identities=23% Similarity=0.270 Sum_probs=73.7
Q ss_pred CCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEec
Q psy3329 238 TKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLIL 317 (694)
Q Consensus 238 ~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 317 (694)
++|+.|++++|.++.+++..|..+++|+.|+|++|.+.+.++ +..+++|++|+|++|.++++++ .++|+.|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence 466666776666666666666666666777776666665554 5666666666666666655442 256666666
Q ss_pred cCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCc
Q psy3329 318 SGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLH 374 (694)
Q Consensus 318 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 374 (694)
++|.++++++. .+++|+.|++++|.++++++..+. .+++|+.|++++|.++
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~---~l~~L~~L~Ls~N~l~ 157 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEG---CRSRVQYLDLKLNEID 157 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGG---GGSSEEEEECTTSCCC
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhc---CCCCCCEEECCCCCCC
Confidence 66666655542 235566666666666655444443 4455555555555443
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1e-26 Score=236.58 Aligned_cols=241 Identities=22% Similarity=0.292 Sum_probs=177.0
Q ss_pred cCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcE
Q psy3329 235 KPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKT 314 (694)
Q Consensus 235 ~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 314 (694)
..+++|++|++++|.++.+++..|..+++|+.|++++|.+.+..+ +..+++|++|++++|.++++. ..++|++
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~ 103 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIET 103 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCE
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCE
Confidence 445667777777777777666667777777777777777766554 667777777777777776554 2367777
Q ss_pred EeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhcc
Q psy3329 315 LILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWK 394 (694)
Q Consensus 315 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~ 394 (694)
|++++|.++++.+. .+++|+.|++++|+++.+++..+. .+++|+.|++++|.++.++. ..+
T Consensus 104 L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~---~l~~L~~L~Ls~N~l~~~~~-----------~~~-- 164 (317)
T 3o53_A 104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEG---CRSRVQYLDLKLNEIDTVNF-----------AEL-- 164 (317)
T ss_dssp EECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTG---GGSSEEEEECTTSCCCEEEG-----------GGG--
T ss_pred EECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhh---ccCCCCEEECCCCCCCcccH-----------HHH--
Confidence 77777777776653 356778888888888777666665 67788888888887764321 111
Q ss_pred ccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEc
Q psy3329 395 NFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNL 474 (694)
Q Consensus 395 ~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 474 (694)
+.. +++|++|++++|.+++++... .+++|+.|+|++|.|+++++. +..+++|+.|+|
T Consensus 165 ---------------~~~---l~~L~~L~L~~N~l~~~~~~~----~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L 221 (317)
T 3o53_A 165 ---------------AAS---SDTLEHLNLQYNFIYDVKGQV----VFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISL 221 (317)
T ss_dssp ---------------GGG---TTTCCEEECTTSCCCEEECCC----CCTTCCEEECCSSCCCEECGG-GGGGTTCSEEEC
T ss_pred ---------------hhc---cCcCCEEECCCCcCccccccc----ccccCCEEECCCCcCCcchhh-hcccCcccEEEC
Confidence 112 678888899888888875443 478899999999999988776 788899999999
Q ss_pred cCCccCCCcchhhhhhcccCCCcEEECCCCccc-ccChhhhcCCCcccEEEccCC
Q psy3329 475 ANNNLSMTSELSFQFLDVLLELESLDLSNNNLT-HISPTVLRHNRAITSIKLVGN 528 (694)
Q Consensus 475 ~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~-~~~~~~~~~~~~l~~l~l~~N 528 (694)
++|+++++ |..+ ..+++|+.|++++|.++ +.++..+..++.|+.+++.++
T Consensus 222 ~~N~l~~l-~~~~---~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 222 RNNKLVLI-EKAL---RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp TTSCCCEE-CTTC---CCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cCCcccch-hhHh---hcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 99999865 4445 77889999999999998 667778888888887777633
No 68
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.93 E-value=7.7e-27 Score=259.97 Aligned_cols=429 Identities=14% Similarity=0.094 Sum_probs=299.5
Q ss_pred ccCCCCCceEEECcCCCCc----------------chhhhhhcCCCCcEEEccCCcCCccChhhccC-CC-CCCeEECCC
Q psy3329 12 RNLDNPGLITINLNANPIQ----------------PVEGAFLVARSLLYLYMQECTLSKINPQFFTN-LT-TLNKLDLSG 73 (694)
Q Consensus 12 ~~~~~~~L~~L~Ls~~~l~----------------~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~-~L~~L~Ls~ 73 (694)
.+..+++|++|+++++... .++..+..+++|++|+|++|.++...+..+.. ++ +|++|++++
T Consensus 68 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~ 147 (592)
T 3ogk_B 68 LSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDK 147 (592)
T ss_dssp HHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEES
T ss_pred HHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcC
Confidence 4567889999999774321 12233448999999999999887665666655 34 499999998
Q ss_pred CC-CCc-cCCCCCCCCCCCCEEeCCCCcCCccC----hhhhcCCCCCCEEECCCCcCCc--cchhhhhhcCCCCCCEEEc
Q psy3329 74 NP-LRI-IEPGVFDPLTSLEYLMLNRCNLTYIS----PSAFDNLNHLKTLELSQNKLKS--HIDWTLVLGNLGKLDTLDL 145 (694)
Q Consensus 74 n~-~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~~l~~L~~L~L 145 (694)
|. +.. ..+.....+++|++|+|++|.+++.. +..+..+++|+.|++++|.+.. ...++..+.++++|+.|++
T Consensus 148 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L 227 (592)
T 3ogk_B 148 CSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKV 227 (592)
T ss_dssp CEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEEC
T ss_pred CCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEec
Confidence 86 221 01111246899999999999887653 3455678999999999998873 2356667788999999999
Q ss_pred cCCCCCCCCccccCCCCCCcEEeCCCCCCC-CcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCC
Q psy3329 146 RQSGISNLPDNVFANNTWLRNLNLAENELI-DLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNP 224 (694)
Q Consensus 146 ~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~ 224 (694)
++|.+.+++ ..+..+++|++|+++..... ...........+++|+.++++++.. ..++ ..+..+++|++|++++|.
T Consensus 228 ~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~-~~~~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 228 GDFEILELV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMP-ILFPFAAQIRKLDLLYAL 304 (592)
T ss_dssp SSCBGGGGH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGG-GGGGGGGGCCEEEETTCC
T ss_pred cCccHHHHH-HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHH-HHHhhcCCCcEEecCCCc
Confidence 999888765 56788899999999753221 1011111112678899999988643 4444 457789999999999999
Q ss_pred CCccchhhhccCCCCccEEEccCcCCCc-CCcccccCCCCccEEeCCC-----------CCCccc-chhhcCCCCCCcEE
Q psy3329 225 LSAADLSVALKPLTKLHRLSLRNCGLSR-LPANTFHRFTCLQELDISH-----------NPLIDA-FTALLSPLESLEHL 291 (694)
Q Consensus 225 l~~~~~~~~l~~l~~L~~L~l~~n~i~~-~~~~~~~~~~~L~~L~L~~-----------n~~~~~-~~~~~~~l~~L~~L 291 (694)
+++......+..+++|+.|+++ +.+.. ........+++|++|++++ +.+++. +......+++|++|
T Consensus 305 l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L 383 (592)
T 3ogk_B 305 LETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYM 383 (592)
T ss_dssp CCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEE
T ss_pred CCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEE
Confidence 8776665556889999999998 43432 2223346788999999993 556543 33334568999999
Q ss_pred ECcCCCCcccChhhhcC-CCCCcEEecc----CCcccCcC-----chhhcCCCCCCEEeCCCCC--CcccCccccccCCC
Q psy3329 292 DMGYSNLQRISRSTFLK-MTSLKTLILS----GNKLETLE-----SGLFQNLTHLSVLELNNCG--LTRLNETVFHENYT 359 (694)
Q Consensus 292 ~L~~n~l~~~~~~~~~~-l~~L~~L~L~----~n~l~~~~-----~~~l~~l~~L~~L~L~~n~--l~~~~~~~~~~~~~ 359 (694)
+++.+.+++.....+.. +++|+.|+++ .|.+++.+ +..+.++++|+.|+++.|. +++.....+.. .
T Consensus 384 ~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~--~ 461 (592)
T 3ogk_B 384 AVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ--Y 461 (592)
T ss_dssp EEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHH--S
T ss_pred EeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHH--h
Confidence 99888888766666654 8999999996 66777642 2336779999999998654 55432222221 4
Q ss_pred CCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCC
Q psy3329 360 YPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLP 439 (694)
Q Consensus 360 ~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 439 (694)
+++|+.|++++|+++.. .++.. +.+ +++|+.|++++|.+++.....+.
T Consensus 462 ~~~L~~L~L~~n~l~~~----------~~~~~------------------~~~---~~~L~~L~l~~n~l~~~~~~~~~- 509 (592)
T 3ogk_B 462 SPNVRWMLLGYVGESDE----------GLMEF------------------SRG---CPNLQKLEMRGCCFSERAIAAAV- 509 (592)
T ss_dssp CTTCCEEEECSCCSSHH----------HHHHH------------------HTC---CTTCCEEEEESCCCBHHHHHHHH-
T ss_pred CccceEeeccCCCCCHH----------HHHHH------------------Hhc---CcccCeeeccCCCCcHHHHHHHH-
Confidence 78999999999987531 11111 122 88999999999998653222111
Q ss_pred cCCCCccEEEccCCcCCccCCCCC-CCCCCCCEEEccCCc
Q psy3329 440 PQLSRLRSLDLSRCKIDYLPPNVF-NNTRNITSLNLANNN 478 (694)
Q Consensus 440 ~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~N~ 478 (694)
..+++|+.|+|++|+++......+ ..++.+....+..++
T Consensus 510 ~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~~ 549 (592)
T 3ogk_B 510 TKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRR 549 (592)
T ss_dssp HHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC-
T ss_pred HhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCcc
Confidence 568999999999999887543323 456777777666553
No 69
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=4.5e-25 Score=225.09 Aligned_cols=234 Identities=21% Similarity=0.290 Sum_probs=148.9
Q ss_pred CCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEe
Q psy3329 237 LTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLI 316 (694)
Q Consensus 237 l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 316 (694)
.++++.|++++|.++.++. .+..+++|++|++++|.+. .+|..+..+++|++|+|++|.++.++ ..+.++++|+.|+
T Consensus 80 ~~~l~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPD-QAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALP-ASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCSSCCS-CGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCC-GGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCchhcCh-hhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCc-HHHhcCcCCCEEE
Confidence 4667777777777776664 3555777777777777776 55666677777777777777777553 4567777777777
Q ss_pred ccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhcccc
Q psy3329 317 LSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNF 396 (694)
Q Consensus 317 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~ 396 (694)
|++|.+.+..+..+.. ..+. ..+. .+++|+.|++++|.++.++. .
T Consensus 157 L~~n~~~~~~p~~~~~------~~~~---------~~~~---~l~~L~~L~L~~n~l~~lp~------------~----- 201 (328)
T 4fcg_A 157 IRACPELTELPEPLAS------TDAS---------GEHQ---GLVNLQSLRLEWTGIRSLPA------------S----- 201 (328)
T ss_dssp EEEETTCCCCCSCSEE------EC-C---------CCEE---ESTTCCEEEEEEECCCCCCG------------G-----
T ss_pred CCCCCCccccChhHhh------ccch---------hhhc---cCCCCCEEECcCCCcCcchH------------h-----
Confidence 7776555444433221 0000 0011 34455555555554442221 1
Q ss_pred chhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccC
Q psy3329 397 DFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLAN 476 (694)
Q Consensus 397 ~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 476 (694)
+.. +++|++|++++|.++++++. + ..+++|+.|+|++|.+.+..|..|.++++|+.|+|++
T Consensus 202 -------------l~~---l~~L~~L~L~~N~l~~l~~~-l--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~ 262 (328)
T 4fcg_A 202 -------------IAN---LQNLKSLKIRNSPLSALGPA-I--HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD 262 (328)
T ss_dssp -------------GGG---CTTCCEEEEESSCCCCCCGG-G--GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTT
T ss_pred -------------hcC---CCCCCEEEccCCCCCcCchh-h--ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCC
Confidence 111 55666666666666665442 4 5677777777777777776666677777777777777
Q ss_pred CccCCCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEEEccCCcc
Q psy3329 477 NNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPW 530 (694)
Q Consensus 477 N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~ 530 (694)
|++.+.+|..+ ..+++|+.|+|++|++.+.+|..+..+++++.+++..|.+
T Consensus 263 n~~~~~~p~~~---~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 263 CSNLLTLPLDI---HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp CTTCCBCCTTG---GGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred CCchhhcchhh---hcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 77777777666 6777777777777777777777777777777777766544
No 70
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=2.6e-27 Score=263.93 Aligned_cols=403 Identities=18% Similarity=0.143 Sum_probs=222.8
Q ss_pred CCCCCCEEeCCCCcCCccChhhhc-CCCCCCEEECCCC-cCCccchhhhhhcCCCCCCEEEccCCCCCCCCcccc----C
Q psy3329 86 PLTSLEYLMLNRCNLTYISPSAFD-NLNHLKTLELSQN-KLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVF----A 159 (694)
Q Consensus 86 ~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~----~ 159 (694)
.+++|++|+|++|.+++..+..+. .+++|+.|++++| .+.. ..++..+.++++|++|++++|.++......+ .
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST-DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH-HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH-HHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 467788888888877766555554 5788888888877 3332 2344555678888888888887665443332 3
Q ss_pred CCCCCcEEeCCCCC--CCCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCC--Ccc---chhh
Q psy3329 160 NNTWLRNLNLAENE--LIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPL--SAA---DLSV 232 (694)
Q Consensus 160 ~~~~L~~L~l~~n~--l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l--~~~---~~~~ 232 (694)
.+++|++|+++++. +... ....+...+++|++|++++|...+.+ ...+..+++|+.|+++.+.. ... ....
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~-~l~~l~~~~~~L~~L~L~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 259 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFS-ALERLVTRCPNLKSLKLNRAVPLEKL-ATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV 259 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHH-HHHHHHHHCTTCCEEECCTTSCHHHH-HHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH
T ss_pred cCCcCcEEEecccCCcCCHH-HHHHHHHhCCCCcEEecCCCCcHHHH-HHHHhcCCcceEcccccccCccchhhHHHHHH
Confidence 56688888888775 2211 11111124678888888877322232 24566788888888765532 110 0112
Q ss_pred hccCCCCccEE-EccCcCCCcCCcccccCCCCccEEeCCCCCCccc-chhhcCCCCCCcEEECcCCCCcccCh-hhhcCC
Q psy3329 233 ALKPLTKLHRL-SLRNCGLSRLPANTFHRFTCLQELDISHNPLIDA-FTALLSPLESLEHLDMGYSNLQRISR-STFLKM 309 (694)
Q Consensus 233 ~l~~l~~L~~L-~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l 309 (694)
.+..+++|+.+ .+.......++ ..+..+++|++|++++|.+.+. +...+..+++|++|++++| ++.... .....+
T Consensus 260 ~l~~~~~L~~Ls~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~ 337 (594)
T 2p1m_B 260 ALSGCKELRCLSGFWDAVPAYLP-AVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTC 337 (594)
T ss_dssp HHHTCTTCCEEECCBTCCGGGGG-GGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHC
T ss_pred HHhcCCCcccccCCcccchhhHH-HHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhC
Confidence 34677788877 33333222222 2234567888888888876653 2334567788888888877 332211 122357
Q ss_pred CCCcEEeccC---------CcccCcCchhh-cCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCC--C----CCC
Q psy3329 310 TSLKTLILSG---------NKLETLESGLF-QNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLS--G----NPL 373 (694)
Q Consensus 310 ~~L~~L~L~~---------n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls--~----n~l 373 (694)
++|++|++.+ +.++......+ ..+++|+.|.++.|.++......+.. .+++|+.|+++ + +.+
T Consensus 338 ~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~--~~~~L~~L~L~~~~~~~~~~l 415 (594)
T 2p1m_B 338 KDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIAR--NRPNMTRFRLCIIEPKAPDYL 415 (594)
T ss_dssp TTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHH--HCTTCCEEEEEESSTTCCCTT
T ss_pred CCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHh--hCCCcceeEeecccCCCcccc
Confidence 8888888733 34443222222 34678888877777776533322221 36777888777 3 333
Q ss_pred cCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCC
Q psy3329 374 HVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRC 453 (694)
Q Consensus 374 ~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n 453 (694)
+..+... .++. .+.. +++|+.|++++ .+++.....+. ..+++|+.|+|++|
T Consensus 416 ~~~~~~~------~~~~------------------l~~~---~~~L~~L~L~~-~l~~~~~~~l~-~~~~~L~~L~L~~~ 466 (594)
T 2p1m_B 416 TLEPLDI------GFGA------------------IVEH---CKDLRRLSLSG-LLTDKVFEYIG-TYAKKMEMLSVAFA 466 (594)
T ss_dssp TCCCTHH------HHHH------------------HHHH---CTTCCEEECCS-SCCHHHHHHHH-HHCTTCCEEEEESC
T ss_pred cCCchhh------HHHH------------------HHhh---CCCccEEeecC-cccHHHHHHHH-HhchhccEeeccCC
Confidence 3221100 0000 0112 56677777765 44433222220 12566777777777
Q ss_pred cCCccCCCCC-CCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccChhhh-cCCCcccEEEcc
Q psy3329 454 KIDYLPPNVF-NNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVL-RHNRAITSIKLV 526 (694)
Q Consensus 454 ~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~-~~~~~l~~l~l~ 526 (694)
.+++.....+ .++++|+.|+|++|.+++.....+ ...+++|+.|++++|+++......+ ..++.+....+.
T Consensus 467 ~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~ 539 (594)
T 2p1m_B 467 GDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLAN--ASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVID 539 (594)
T ss_dssp CSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHT--GGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEEC
T ss_pred CCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHH--HHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEec
Confidence 6655332222 446667777777776643322211 1446666777776666643222222 334555444443
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2.5e-25 Score=239.50 Aligned_cols=227 Identities=22% Similarity=0.276 Sum_probs=195.9
Q ss_pred CCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEE
Q psy3329 260 RFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVL 339 (694)
Q Consensus 260 ~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 339 (694)
.+++|+.|+|++|.+.+..+..|..+++|++|+|++|.++++.+ +..+++|+.|+|++|.++++++ .++|+.|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence 44589999999999999999999999999999999999998775 8899999999999999998765 3899999
Q ss_pred eCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCC
Q psy3329 340 ELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDL 419 (694)
Q Consensus 340 ~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L 419 (694)
++++|.+++++.. .+++|+.|++++|.++.+++ .. +.. +++|
T Consensus 105 ~L~~N~l~~~~~~------~l~~L~~L~L~~N~l~~~~~-----------~~------------------~~~---l~~L 146 (487)
T 3oja_A 105 HAANNNISRVSCS------RGQGKKNIYLANNKITMLRD-----------LD------------------EGC---RSRV 146 (487)
T ss_dssp ECCSSCCCCEEEC------CCSSCEEEECCSSCCCSGGG-----------BC------------------GGG---GSSE
T ss_pred ECcCCcCCCCCcc------ccCCCCEEECCCCCCCCCCc-----------hh------------------hcC---CCCC
Confidence 9999999987664 46889999999999975432 11 223 7899
Q ss_pred ceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEE
Q psy3329 420 EELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESL 499 (694)
Q Consensus 420 ~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L 499 (694)
+.|++++|.+++.++..+. ..+++|+.|+|++|.|+++++. ..+++|+.|+|++|+++++++. + ..+++|+.|
T Consensus 147 ~~L~Ls~N~l~~~~~~~l~-~~l~~L~~L~Ls~N~l~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~-~---~~l~~L~~L 219 (487)
T 3oja_A 147 QYLDLKLNEIDTVNFAELA-ASSDTLEHLNLQYNFIYDVKGQ--VVFAKLKTLDLSSNKLAFMGPE-F---QSAAGVTWI 219 (487)
T ss_dssp EEEECTTSCCCEEEGGGGG-GGTTTCCEEECTTSCCCEEECC--CCCTTCCEEECCSSCCCEECGG-G---GGGTTCSEE
T ss_pred CEEECCCCCCCCcChHHHh-hhCCcccEEecCCCcccccccc--ccCCCCCEEECCCCCCCCCCHh-H---cCCCCccEE
Confidence 9999999999998777661 3789999999999999998654 4689999999999999997765 5 789999999
Q ss_pred ECCCCcccccChhhhcCCCcccEEEccCCccccccCcHHH
Q psy3329 500 DLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADM 539 (694)
Q Consensus 500 ~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~~~~~ 539 (694)
+|++|.+++++ ..+..+++|+.+++++|++.|+|...++
T Consensus 220 ~Ls~N~l~~lp-~~l~~l~~L~~L~l~~N~l~c~~~~~~~ 258 (487)
T 3oja_A 220 SLRNNKLVLIE-KALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (487)
T ss_dssp ECTTSCCCEEC-TTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred EecCCcCcccc-hhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence 99999999865 4578889999999999999998765554
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=8.3e-26 Score=229.36 Aligned_cols=206 Identities=19% Similarity=0.202 Sum_probs=125.1
Q ss_pred CCCCccEEeCCCCCCcccchhhc--CCCCCCcEEECcCCCCcccChhhhcCC-----CCCcEEeccCCcccCcCchhhcC
Q psy3329 260 RFTCLQELDISHNPLIDAFTALL--SPLESLEHLDMGYSNLQRISRSTFLKM-----TSLKTLILSGNKLETLESGLFQN 332 (694)
Q Consensus 260 ~~~~L~~L~L~~n~~~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~l~~ 332 (694)
.+++|++|++++|.+.+.+|..+ ..+++|++|+|++|.++++ +..+..+ ++|++|+|++|++.++++..+..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 35555555555555555544443 5556666666666666655 3444444 66677777777666666666666
Q ss_pred CCCCCEEeCCCCCCccc---Ccc-ccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhhhhhccc
Q psy3329 333 LTHLSVLELNNCGLTRL---NET-VFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNET 408 (694)
Q Consensus 333 l~~L~~L~L~~n~l~~~---~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~ 408 (694)
+++|+.|++++|++.+. +.. .+. .+++|++|++++|+++.++ .++..+
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~---~l~~L~~L~L~~N~l~~~~---------~~~~~~---------------- 223 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPL---KFPTLQVLALRNAGMETPS---------GVCSAL---------------- 223 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTT---SCTTCCEEECTTSCCCCHH---------HHHHHH----------------
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhc---cCCCCCEEECCCCcCcchH---------HHHHHH----------------
Confidence 67777777777765442 111 112 5666777777777664221 111111
Q ss_pred ccccCCCCCCCceEEcCCCCCcccCC-CCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhh
Q psy3329 409 VFHENYTYPDLEELRLSGNPLHVLPT-GNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSF 487 (694)
Q Consensus 409 ~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 487 (694)
+.. +++|+.|++++|.+++.++ ..+ ..+++|+.|+|++|.|+.++...+ ++|++|+|++|++++. |. +
T Consensus 224 -~~~---l~~L~~L~Ls~N~l~~~~~~~~~--~~l~~L~~L~Ls~N~l~~ip~~~~---~~L~~L~Ls~N~l~~~-p~-~ 292 (312)
T 1wwl_A 224 -AAA---RVQLQGLDLSHNSLRDAAGAPSC--DWPSQLNSLNLSFTGLKQVPKGLP---AKLSVLDLSYNRLDRN-PS-P 292 (312)
T ss_dssp -HHT---TCCCSEEECTTSCCCSSCCCSCC--CCCTTCCEEECTTSCCSSCCSSCC---SEEEEEECCSSCCCSC-CC-T
T ss_pred -Hhc---CCCCCEEECCCCcCCcccchhhh--hhcCCCCEEECCCCccChhhhhcc---CCceEEECCCCCCCCC-hh-H
Confidence 122 5677777777777777653 333 456778888888887776655433 6777777777777776 33 4
Q ss_pred hhhcccCCCcEEECCCCcccc
Q psy3329 488 QFLDVLLELESLDLSNNNLTH 508 (694)
Q Consensus 488 ~~l~~l~~L~~L~ls~N~l~~ 508 (694)
..+++|++|++++|++++
T Consensus 293 ---~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 293 ---DELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp ---TTSCEEEEEECTTCTTTC
T ss_pred ---hhCCCCCEEeccCCCCCC
Confidence 667777777777777765
No 73
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.92 E-value=9.4e-24 Score=207.04 Aligned_cols=125 Identities=30% Similarity=0.533 Sum_probs=113.6
Q ss_pred CCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCC
Q psy3329 416 YPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLE 495 (694)
Q Consensus 416 ~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~ 495 (694)
+++|+.|++++|.++++++..| ..+++|++|+|++|.|+++++..|..+++|+.|+|++|+++++.+..| ..+++
T Consensus 82 l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~l~~ 156 (251)
T 3m19_A 82 LTELGTLGLANNQLASLPLGVF--DHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAF---DKLTN 156 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT---TTCTT
T ss_pred CCcCCEEECCCCcccccChhHh--cccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHc---CcCcC
Confidence 6777788888888887777777 788999999999999999999888999999999999999999888777 88899
Q ss_pred CcEEECCCCcccccChhhhcCCCcccEEEccCCccccc-cCcHHHHHHHHh
Q psy3329 496 LESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCD-CNIADMWEWATR 545 (694)
Q Consensus 496 L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~-c~~~~~~~~~~~ 545 (694)
|++|+|++|+++++++..+..+++|+.+++++|+|.|+ |.+.|+..|...
T Consensus 157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~ 207 (251)
T 3m19_A 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRE 207 (251)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHH
T ss_pred CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHh
Confidence 99999999999999988899999999999999999999 999999999986
No 74
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=3.6e-24 Score=218.47 Aligned_cols=227 Identities=22% Similarity=0.249 Sum_probs=149.5
Q ss_pred CCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEE
Q psy3329 213 TKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLD 292 (694)
Q Consensus 213 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 292 (694)
++++.|++++|.++..+. .+..+++|++|++++|.++.++ ..+..+++|++|++++|.+. .+|..+..+++|++|+
T Consensus 81 ~~l~~L~L~~n~l~~lp~--~l~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPD--QAFRLSHLQHMTIDAAGLMELP-DTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp TTCCEEEEESSCCSSCCS--CGGGGTTCSEEEEESSCCCCCC-SCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred cceeEEEccCCCchhcCh--hhhhCCCCCEEECCCCCccchh-HHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 556666666666553332 2344566666666666666444 34566666666666666665 4455566666666666
Q ss_pred CcCCCCcccChhhh---------cCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCC
Q psy3329 293 MGYSNLQRISRSTF---------LKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDL 363 (694)
Q Consensus 293 L~~n~l~~~~~~~~---------~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L 363 (694)
|++|.+.+..+..+ .++++|++|+|++|.++.++. .+..+++|+.|++++|.+++++.. +
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~N~l~~l~~~-l--------- 225 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPA-SIANLQNLKSLKIRNSPLSALGPA-I--------- 225 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCG-GGGGCTTCCEEEEESSCCCCCCGG-G---------
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchH-hhcCCCCCCEEEccCCCCCcCchh-h---------
Confidence 66655444333333 335556666666665554432 245555555555555555544332 1
Q ss_pred CeeeCCCCCCcCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCC
Q psy3329 364 EELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLS 443 (694)
Q Consensus 364 ~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~ 443 (694)
.. +++|+.|++++|.+.+..+..+ ..++
T Consensus 226 -----------------------------------------------~~---l~~L~~L~Ls~n~~~~~~p~~~--~~l~ 253 (328)
T 4fcg_A 226 -----------------------------------------------HH---LPKLEELDLRGCTALRNYPPIF--GGRA 253 (328)
T ss_dssp -----------------------------------------------GG---CTTCCEEECTTCTTCCBCCCCT--TCCC
T ss_pred -----------------------------------------------cc---CCCCCEEECcCCcchhhhHHHh--cCCC
Confidence 11 6677777777777777777777 8889
Q ss_pred CccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCccccc
Q psy3329 444 RLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHI 509 (694)
Q Consensus 444 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~ 509 (694)
+|+.|+|++|.+.+..|..+.++++|+.|+|++|++.+.+|..+ ..+++|+.+++..|.+...
T Consensus 254 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l---~~L~~L~~l~l~~~~~~~l 316 (328)
T 4fcg_A 254 PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI---AQLPANCIILVPPHLQAQL 316 (328)
T ss_dssp CCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG---GGSCTTCEEECCGGGSCC-
T ss_pred CCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH---hhccCceEEeCCHHHHHHH
Confidence 99999999998888888788999999999999999999999888 8899999999887765443
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=8e-26 Score=229.47 Aligned_cols=252 Identities=23% Similarity=0.225 Sum_probs=127.2
Q ss_pred hcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCcc-CCCCCC-------CCCCCCEEeCCCCcCCccChhhh
Q psy3329 37 LVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRII-EPGVFD-------PLTSLEYLMLNRCNLTYISPSAF 108 (694)
Q Consensus 37 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~-~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~l 108 (694)
+..++|++|++++|.+ .+ |..+... |+.|++++|.+... .+..+. ++++|++|++++|.+++..|..+
T Consensus 40 ~~~~~L~~l~l~~n~l-~~-p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE-AD-LGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT-CC-CHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc-cc-HHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 3444555555555555 33 3323222 55556665555321 111111 35666666666666665545544
Q ss_pred --cCCCCCCEEECCCCcCCccchhhhhhcCC-----CCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCCcc-hh
Q psy3329 109 --DNLNHLKTLELSQNKLKSHIDWTLVLGNL-----GKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLD-VA 180 (694)
Q Consensus 109 --~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-----~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~ 180 (694)
..+++|++|++++|.++..+ ..++.+ ++|++|++++|.+..+++..+..+++|++|++++|.+.+.. ..
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~~---~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 192 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATRD---AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSSS---SHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcchh---HHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence 56666666666666665432 233333 77777777777777777777778888888888887754321 11
Q ss_pred hhc-ccCCCcccEEeCCCCCCCC--CCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCccc
Q psy3329 181 TTL-GQNLVHLDSLDLSNCHLKG--PLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANT 257 (694)
Q Consensus 181 ~~~-~~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~ 257 (694)
... ...+++|++|++++|.+.+ .++...+..+++|+.|++++|.+++..+. ..
T Consensus 193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~------------------------~~ 248 (312)
T 1wwl_A 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA------------------------PS 248 (312)
T ss_dssp HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC------------------------SC
T ss_pred HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccch------------------------hh
Confidence 111 0134444555554444421 11122233444444444444444433211 22
Q ss_pred ccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccC
Q psy3329 258 FHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLET 324 (694)
Q Consensus 258 ~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 324 (694)
+..+++|+.|++++|.++ .+|..+. ++|++|+|++|++++++. +..+++|++|++++|.+++
T Consensus 249 ~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~p~--~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 249 CDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRNPS--PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSCCC--TTTSCEEEEEECTTCTTTC
T ss_pred hhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCChh--HhhCCCCCEEeccCCCCCC
Confidence 333444555555555444 2222222 455555555555555521 5555555555555555543
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=5.7e-23 Score=203.83 Aligned_cols=202 Identities=28% Similarity=0.426 Sum_probs=114.0
Q ss_pred ccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccC
Q psy3329 240 LHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSG 319 (694)
Q Consensus 240 L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 319 (694)
.+.+++++++++.+|.. + .++++.|++++|.+.+..+..|..+++|++|+|++|.++.+++..|.++++|++|++++
T Consensus 18 ~~~l~~~~~~l~~ip~~-~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSN-I--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCSSCCSC-C--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCCccCCC-C--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 44555555555554421 1 13455555555555544444455555555555555555555544445555555555555
Q ss_pred CcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchh
Q psy3329 320 NKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFL 399 (694)
Q Consensus 320 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l 399 (694)
|.+..+++..|..+++|+.|++++|.++.+++..|. .
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~---~---------------------------------------- 131 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFD---S---------------------------------------- 131 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTT---T----------------------------------------
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhC---c----------------------------------------
Confidence 555555544445555555555555555444433332 2
Q ss_pred hhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCcc
Q psy3329 400 VILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNL 479 (694)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l 479 (694)
+++|+.|++++|.++++++..| ..+++|+.|+|++|.++++++..|.++++|++|+|++|++
T Consensus 132 ----------------l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (270)
T 2o6q_A 132 ----------------LTKLTYLSLGYNELQSLPKGVF--DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193 (270)
T ss_dssp ----------------CTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ----------------CcCCCEEECCCCcCCccCHhHc--cCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcC
Confidence 4555566666666665555555 5666677777777777666666666667777777777777
Q ss_pred CCCcchhhhhhcccCCCcEEECCCCcccc
Q psy3329 480 SMTSELSFQFLDVLLELESLDLSNNNLTH 508 (694)
Q Consensus 480 ~~~~~~~~~~l~~l~~L~~L~ls~N~l~~ 508 (694)
+++++..| ..+++|+.|+|++|.+..
T Consensus 194 ~~~~~~~~---~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 194 KRVPEGAF---DSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp SCCCTTTT---TTCTTCCEEECCSSCBCC
T ss_pred CcCCHHHh---ccccCCCEEEecCCCeeC
Confidence 66666555 566677777777776654
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=1.5e-23 Score=208.28 Aligned_cols=125 Identities=34% Similarity=0.594 Sum_probs=109.2
Q ss_pred CCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCC
Q psy3329 416 YPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLE 495 (694)
Q Consensus 416 ~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~ 495 (694)
+++|++|++++|.++++++..+ ..+++|++|++++|.++++++..|..+++|+.|++++|++++..+..+ ..+++
T Consensus 108 l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~ 182 (272)
T 3rfs_A 108 LTNLKELVLVENQLQSLPDGVF--DKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVF---DKLTQ 182 (272)
T ss_dssp CTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT---TTCTT
T ss_pred CcCCCEEECCCCcCCccCHHHh--ccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHh---cCCcc
Confidence 6677777777777777777777 788999999999999999998888999999999999999998888777 78899
Q ss_pred CcEEECCCCcccccChhhhcCCCcccEEEccCCccccccC-cHHHHHHHHh
Q psy3329 496 LESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCN-IADMWEWATR 545 (694)
Q Consensus 496 L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~-~~~~~~~~~~ 545 (694)
|+.|++++|++++.++..+..+++|+.+++++|+|.|+|+ +.++..|...
T Consensus 183 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~n~ 233 (272)
T 3rfs_A 183 LKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINK 233 (272)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHH
T ss_pred CCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcHHHHHHHHHHh
Confidence 9999999999999988888999999999999999999997 5667777654
No 78
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=2.8e-23 Score=207.05 Aligned_cols=210 Identities=23% Similarity=0.311 Sum_probs=135.2
Q ss_pred CCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEec
Q psy3329 238 TKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLIL 317 (694)
Q Consensus 238 ~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 317 (694)
++|++|++++|+++.+++..|..+++|+.|++++|.+.+..+..+..+++|++|+|++|.++.+.+..|.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 45777777777777766666777777777777777777766666777777777777777777777777777777777777
Q ss_pred cCCcccCcCchhhcCCCCCCEEeCCCCCCcccC-ccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhcccc
Q psy3329 318 SGNKLETLESGLFQNLTHLSVLELNNCGLTRLN-ETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNF 396 (694)
Q Consensus 318 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~ 396 (694)
++|.+..+.+..+..+++|++|++++|.++.+. +..+. .+++|+.|++++|+++.++.. .
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~---~l~~L~~L~Ls~N~l~~~~~~------------~---- 168 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS---NLTNLEHLDLSSNKIQSIYCT------------D---- 168 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGG---GCTTCCEEECCSSCCCEECGG------------G----
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhc---cCCCCCEEECCCCCCCcCCHH------------H----
Confidence 777777776666777778888888877777643 33444 556666666666666533210 0
Q ss_pred chhhhhhhhcccccccCCCCCCCc-eEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEcc
Q psy3329 397 DFLVILFILNETVFHENYTYPDLE-ELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLA 475 (694)
Q Consensus 397 ~~l~~~~~~~~~~~~~~~~~~~L~-~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 475 (694)
+.....++.+. .|++++|.++++++..+ . ..+|+.|+|++|.++++++..|..+++|+.|+|+
T Consensus 169 -------------~~~l~~L~~l~l~L~ls~n~l~~~~~~~~--~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 232 (276)
T 2z62_A 169 -------------LRVLHQMPLLNLSLDLSLNPMNFIQPGAF--K-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 232 (276)
T ss_dssp -------------GHHHHTCTTCCEEEECCSSCCCEECTTSS--C-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECC
T ss_pred -------------hhhhhhccccceeeecCCCcccccCcccc--C-CCcccEEECCCCceeecCHhHhcccccccEEEcc
Confidence 11100022222 56666666666665554 2 2356666666666666666666666666666666
Q ss_pred CCccCCC
Q psy3329 476 NNNLSMT 482 (694)
Q Consensus 476 ~N~l~~~ 482 (694)
+|.+++.
T Consensus 233 ~N~~~c~ 239 (276)
T 2z62_A 233 TNPWDCS 239 (276)
T ss_dssp SSCBCCC
T ss_pred CCccccc
Confidence 6666543
No 79
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.90 E-value=2.6e-23 Score=198.99 Aligned_cols=126 Identities=29% Similarity=0.431 Sum_probs=119.0
Q ss_pred CCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCC
Q psy3329 416 YPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLE 495 (694)
Q Consensus 416 ~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~ 495 (694)
+++|+.|+|++|.++++.+..| ..+++|++|+|++|.|+.+++..|.++++|+.|+|++|+++++.+..| ..+++
T Consensus 55 l~~L~~L~Ls~N~i~~~~~~~~--~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~---~~l~~ 129 (220)
T 2v9t_B 55 YKKLRRIDLSNNQISELAPDAF--QGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAF---QDLHN 129 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTTT--TTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT---TTCTT
T ss_pred CCCCCEEECCCCcCCCcCHHHh--hCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHc---CCCCC
Confidence 7889999999999999988888 899999999999999999999999999999999999999999999888 88999
Q ss_pred CcEEECCCCcccccChhhhcCCCcccEEEccCCccccccCcHHHHHHHHhc
Q psy3329 496 LESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEWATRE 546 (694)
Q Consensus 496 L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~~~~~~~~~~~~ 546 (694)
|+.|+|++|+++++++..+..+++|+.+++++|+|.|+|++.|+..|....
T Consensus 130 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~~l~~~l~~~ 180 (220)
T 2v9t_B 130 LNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTN 180 (220)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHC
T ss_pred CCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccHHHHHHHHhC
Confidence 999999999999999988999999999999999999999999999998763
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=1.6e-23 Score=207.88 Aligned_cols=208 Identities=26% Similarity=0.380 Sum_probs=132.9
Q ss_pred CCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEE
Q psy3329 236 PLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTL 315 (694)
Q Consensus 236 ~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 315 (694)
.+++|+.|++++|.++.++ .+..+++|+.|++++|.+.+. ..+..+++|++|++++|.++++.+..|.++++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~~~--~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQ--GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHTTCCEEECTTSCCCCCT--TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccceeeeeeCCCCccccc--ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 3455556666655555543 244555666666666555442 234555555555555555555555555555555555
Q ss_pred eccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccc
Q psy3329 316 ILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKN 395 (694)
Q Consensus 316 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~ 395 (694)
++++|.++++++..|..+++|+.|++++|.++.+++..+.
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---------------------------------------- 154 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFD---------------------------------------- 154 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT----------------------------------------
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhc----------------------------------------
Confidence 5555555555554455555555555555555444433222
Q ss_pred cchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEcc
Q psy3329 396 FDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLA 475 (694)
Q Consensus 396 ~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 475 (694)
. +++|+.|++++|.++++++..+ ..+++|+.|+|++|.++++++..|..+++|+.|+++
T Consensus 155 ----------------~---l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 213 (272)
T 3rfs_A 155 ----------------K---LTNLTELDLSYNQLQSLPEGVF--DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH 213 (272)
T ss_dssp ----------------T---CTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred ----------------c---CccCCEEECCCCCcCccCHHHh--cCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEcc
Confidence 1 6667777777777777777666 778888888888888888888888888889999998
Q ss_pred CCccCCCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCC
Q psy3329 476 NNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNR 518 (694)
Q Consensus 476 ~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~ 518 (694)
+|.+.+ .++.|+.++++.|+++|.+|..+..++
T Consensus 214 ~N~~~~----------~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 214 DNPWDC----------TCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp SSCBCC----------CTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred CCCccc----------cCcHHHHHHHHHHhCCCcccCcccccC
Confidence 888774 345677788888888888887665543
No 81
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.90 E-value=1.3e-24 Score=242.07 Aligned_cols=352 Identities=16% Similarity=0.106 Sum_probs=217.0
Q ss_pred CCCCCceEEECcCCCCcchh-hhhh-cCCCCcEEEccCC-cCCcc-ChhhccCCCCCCeEECCCCCCCccCCCC----CC
Q psy3329 14 LDNPGLITINLNANPIQPVE-GAFL-VARSLLYLYMQEC-TLSKI-NPQFFTNLTTLNKLDLSGNPLRIIEPGV----FD 85 (694)
Q Consensus 14 ~~~~~L~~L~Ls~~~l~~i~-~~~~-~~~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~Ls~n~~~~~~~~~----~~ 85 (694)
..+++|++|+|+++.++... ..+. .+++|++|++++| .++.. .+..+..+++|++|++++|.++...... ..
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 35678888888888777433 4443 6788888888877 44432 1333457888888888888765433222 23
Q ss_pred CCCCCCEEeCCCCcCCccChhh----hcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCC------------
Q psy3329 86 PLTSLEYLMLNRCNLTYISPSA----FDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSG------------ 149 (694)
Q Consensus 86 ~l~~L~~L~L~~n~l~~~~~~~----l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~------------ 149 (694)
.+++|++|++++|. ..+.... +.++++|+.|++++|.. ...++..+.++++|++|+++.+.
T Consensus 182 ~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~--~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~ 258 (594)
T 2p1m_B 182 TYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVP--LEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLS 258 (594)
T ss_dssp TCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSC--HHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHH
T ss_pred cCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCc--HHHHHHHHhcCCcceEcccccccCccchhhHHHHH
Confidence 56788888888876 2222222 24568888888887722 12356667777777777765442
Q ss_pred --------------CCCCCcccc----CCCCCCcEEeCCCCCCCCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhc
Q psy3329 150 --------------ISNLPDNVF----ANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVN 211 (694)
Q Consensus 150 --------------i~~~~~~~~----~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 211 (694)
+.......+ ..+++|++|++++|.+......... ..+++|++|++++| +...........
T Consensus 259 ~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~-~~~~~L~~L~l~~~-~~~~~l~~l~~~ 336 (594)
T 2p1m_B 259 VALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLL-CQCPKLQRLWVLDY-IEDAGLEVLAST 336 (594)
T ss_dssp HHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHH-TTCTTCCEEEEEGG-GHHHHHHHHHHH
T ss_pred HHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHH-hcCCCcCEEeCcCc-cCHHHHHHHHHh
Confidence 111111111 2457777788877775543222222 26777888887776 321111122235
Q ss_pred CCCCcEEEc---------CCCCCCccchhhhccCCCCccEEEccCcCCCcCCccccc-CCCCccEEeCC--C----CCCc
Q psy3329 212 ATKLRTLYL---------SGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFH-RFTCLQELDIS--H----NPLI 275 (694)
Q Consensus 212 ~~~L~~L~L---------~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~-~~~~L~~L~L~--~----n~~~ 275 (694)
+++|+.|++ ..+.+++.........+++|+.|.+..+.++......+. .+++|+.|+++ + +.++
T Consensus 337 ~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~ 416 (594)
T 2p1m_B 337 CKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT 416 (594)
T ss_dssp CTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT
T ss_pred CCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc
Confidence 778888877 334555544443334577888887777777754433443 47788888887 3 4444
Q ss_pred c-----cchhhcCCCCCCcEEECcCCCCcccChhhhcC-CCCCcEEeccCCcccCcCchhh-cCCCCCCEEeCCCCCCcc
Q psy3329 276 D-----AFTALLSPLESLEHLDMGYSNLQRISRSTFLK-MTSLKTLILSGNKLETLESGLF-QNLTHLSVLELNNCGLTR 348 (694)
Q Consensus 276 ~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~ 348 (694)
+ .++..+..+++|++|+|++ .++......+.. +++|+.|+|++|.+++.....+ ..+++|+.|++++|.++.
T Consensus 417 ~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~ 495 (594)
T 2p1m_B 417 LEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD 495 (594)
T ss_dssp CCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCH
T ss_pred CCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcH
Confidence 2 2233356677888888876 555444444444 7888888888888765544434 567888888888888855
Q ss_pred cCcc-ccccCCCCCCCCeeeCCCCCCc
Q psy3329 349 LNET-VFHENYTYPDLEELRLSGNPLH 374 (694)
Q Consensus 349 ~~~~-~~~~~~~~~~L~~L~Ls~n~l~ 374 (694)
.... ... .+++|+.|++++|+++
T Consensus 496 ~~~~~~~~---~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 496 KALLANAS---KLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHHHHTGG---GGGGSSEEEEESSCCB
T ss_pred HHHHHHHH---hCCCCCEEeeeCCCCC
Confidence 3322 222 5788888888888763
No 82
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.89 E-value=9.8e-23 Score=194.96 Aligned_cols=126 Identities=21% Similarity=0.475 Sum_probs=119.8
Q ss_pred CCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCC
Q psy3329 416 YPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLE 495 (694)
Q Consensus 416 ~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~ 495 (694)
+++|+.|++++|.++++++..| ..+++|++|+|++|.|+++++..|.++++|++|+|++|+++++.|..| ..+++
T Consensus 56 l~~L~~L~L~~N~i~~i~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~l~~ 130 (220)
T 2v70_A 56 LPQLRKINFSNNKITDIEEGAF--EGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSF---IGLSS 130 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSS---TTCTT
T ss_pred CCCCCEEECCCCcCCEECHHHh--CCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHc---CCCcc
Confidence 7889999999999999998888 899999999999999999999999999999999999999999999888 88999
Q ss_pred CcEEECCCCcccccChhhhcCCCcccEEEccCCccccccCcHHHHHHHHhc
Q psy3329 496 LESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEWATRE 546 (694)
Q Consensus 496 L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~~~~~~~~~~~~ 546 (694)
|+.|+|++|++++++|..+..+++|+.+++++|+|.|+|++.|+..|....
T Consensus 131 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~l~~~~~~~ 181 (220)
T 2v70_A 131 VRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLRKK 181 (220)
T ss_dssp CSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGHHHHHHHHHS
T ss_pred CCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999863
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=7.7e-22 Score=197.26 Aligned_cols=203 Identities=27% Similarity=0.292 Sum_probs=117.3
Q ss_pred cCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcE
Q psy3329 235 KPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKT 314 (694)
Q Consensus 235 ~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 314 (694)
..+++++++++++++++.++... .++++.|++++|.+.+..+..+..+++|++|+|++|.++.+... ..+++|+.
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~ 81 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGT 81 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCE
T ss_pred cccCCccEEECCCCCCCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCE
Confidence 44455666666666666555322 14556666666666555555555556666666666655554432 44555555
Q ss_pred EeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhcc
Q psy3329 315 LILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWK 394 (694)
Q Consensus 315 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~ 394 (694)
|++++|.+..++. .+..+++|+.|++++|+++.+++..|. .
T Consensus 82 L~Ls~N~l~~l~~-~~~~l~~L~~L~l~~N~l~~l~~~~~~---~----------------------------------- 122 (290)
T 1p9a_G 82 LDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALR---G----------------------------------- 122 (290)
T ss_dssp EECCSSCCSSCCC-CTTTCTTCCEEECCSSCCCCCCSSTTT---T-----------------------------------
T ss_pred EECCCCcCCcCch-hhccCCCCCEEECCCCcCcccCHHHHc---C-----------------------------------
Confidence 5555555554432 234445555555555555544443333 2
Q ss_pred ccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEc
Q psy3329 395 NFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNL 474 (694)
Q Consensus 395 ~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 474 (694)
+++|+.|++++|.++++++..| ..+++|+.|+|++|+|+++++..|..+++|+.|+|
T Consensus 123 ---------------------l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 179 (290)
T 1p9a_G 123 ---------------------LGELQELYLKGNELKTLPPGLL--TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179 (290)
T ss_dssp ---------------------CTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEEC
T ss_pred ---------------------CCCCCEEECCCCCCCccChhhc--ccccCCCEEECCCCcCCccCHHHhcCcCCCCEEEC
Confidence 5556666666666666666555 56667777777777777776666666777777777
Q ss_pred cCCccCCCcchhhhhhcccCCCcEEECCCCcccc
Q psy3329 475 ANNNLSMTSELSFQFLDVLLELESLDLSNNNLTH 508 (694)
Q Consensus 475 ~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~ 508 (694)
++|+++.+++.. ...++|+.|+|++|.+..
T Consensus 180 ~~N~l~~ip~~~----~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 180 QENSLYTIPKGF----FGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CSSCCCCCCTTT----TTTCCCSEEECCSCCBCC
T ss_pred CCCcCCccChhh----cccccCCeEEeCCCCccC
Confidence 777776554433 345567777777776654
No 84
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.89 E-value=5.2e-23 Score=213.11 Aligned_cols=128 Identities=30% Similarity=0.396 Sum_probs=105.7
Q ss_pred CCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCC
Q psy3329 416 YPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLE 495 (694)
Q Consensus 416 ~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~ 495 (694)
+++|+.|+|++|.++.+++..| ..+++|+.|+|++|.|+++.+..|.++++|+.|+|++|+|+++++..|..+..+++
T Consensus 87 l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~ 164 (361)
T 2xot_A 87 VPNLRYLDLSSNHLHTLDEFLF--SDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPK 164 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTT
T ss_pred CCCCCEEECCCCcCCcCCHHHh--CCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCc
Confidence 6677777777777777777777 78889999999999999988888999999999999999999887776644456889
Q ss_pred CcEEECCCCcccccChhhhcCCCc--ccEEEccCCccccccCcHHH-HHHHHh
Q psy3329 496 LESLDLSNNNLTHISPTVLRHNRA--ITSIKLVGNPWKCDCNIADM-WEWATR 545 (694)
Q Consensus 496 L~~L~ls~N~l~~~~~~~~~~~~~--l~~l~l~~N~~~c~c~~~~~-~~~~~~ 545 (694)
|+.|+|++|+|+++++..+..++. ++.+++++|||.|+|.+.|+ ..|...
T Consensus 165 L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l~~~~~~~~~~ 217 (361)
T 2xot_A 165 LMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYR 217 (361)
T ss_dssp CCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHHHHHHHHHHHHT
T ss_pred CCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcCcHHHHHHHHHh
Confidence 999999999999988888888877 48899999999999999886 567754
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=9.5e-23 Score=198.40 Aligned_cols=199 Identities=16% Similarity=0.248 Sum_probs=125.3
Q ss_pred CccEEeCCCCCCcccchhhcCCCCCCcEEECcCCC-CcccChhhhcCCCCCcEEeccC-CcccCcCchhhcCCCCCCEEe
Q psy3329 263 CLQELDISHNPLIDAFTALLSPLESLEHLDMGYSN-LQRISRSTFLKMTSLKTLILSG-NKLETLESGLFQNLTHLSVLE 340 (694)
Q Consensus 263 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~ 340 (694)
+|+.|++++|.+.+..+..|..+++|++|++++|. ++.+.+..|.++++|++|++++ |.++.+++..|..+++|+.|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 56666666666666655566666666666666664 6666655666666666666666 666666655566666666666
Q ss_pred CCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCc
Q psy3329 341 LNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLE 420 (694)
Q Consensus 341 L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~ 420 (694)
+++|+++.++. |. .+++|+ .|+
T Consensus 112 l~~n~l~~lp~--~~---~l~~L~-----------------------------------------------------~L~ 133 (239)
T 2xwt_C 112 IFNTGLKMFPD--LT---KVYSTD-----------------------------------------------------IFF 133 (239)
T ss_dssp EEEECCCSCCC--CT---TCCBCC-----------------------------------------------------SEE
T ss_pred CCCCCCccccc--cc---cccccc-----------------------------------------------------ccc
Confidence 66666555443 22 222222 122
Q ss_pred eEEcCCC-CCcccCCCCCCCcCCCCcc-EEEccCCcCCccCCCCCCCCCCCCEEEccCCc-cCCCcchhhhhhccc-CCC
Q psy3329 421 ELRLSGN-PLHVLPTGNLLPPQLSRLR-SLDLSRCKIDYLPPNVFNNTRNITSLNLANNN-LSMTSELSFQFLDVL-LEL 496 (694)
Q Consensus 421 ~L~Ls~n-~l~~~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~l-~~L 496 (694)
.|++++| .++++++..| ..+++|+ .|++++|+++.+++..|.. ++|+.|++++|+ ++++.+..| ..+ ++|
T Consensus 134 ~L~l~~N~~l~~i~~~~~--~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~---~~l~~~L 207 (239)
T 2xwt_C 134 ILEITDNPYMTSIPVNAF--QGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAF---GGVYSGP 207 (239)
T ss_dssp EEEEESCTTCCEECTTTT--TTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTT---TTCSBCC
T ss_pred EEECCCCcchhhcCcccc--cchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHh---hccccCC
Confidence 6666666 6666666666 6677777 7777777777766666655 677777777773 776666666 566 677
Q ss_pred cEEECCCCcccccChhhhcCCCcccEEEccCC
Q psy3329 497 ESLDLSNNNLTHISPTVLRHNRAITSIKLVGN 528 (694)
Q Consensus 497 ~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N 528 (694)
+.|++++|+++++++. .+++|+.|++.++
T Consensus 208 ~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 208 SLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp SEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred cEEECCCCccccCChh---HhccCceeeccCc
Confidence 7777777777766554 3556666766654
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=2.8e-22 Score=195.10 Aligned_cols=197 Identities=16% Similarity=0.250 Sum_probs=152.8
Q ss_pred CCccEEEccCcCCCcCCcccccCCCCccEEeCCCCC-CcccchhhcCCCCCCcEEECcC-CCCcccChhhhcCCCCCcEE
Q psy3329 238 TKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNP-LIDAFTALLSPLESLEHLDMGY-SNLQRISRSTFLKMTSLKTL 315 (694)
Q Consensus 238 ~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~-~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L 315 (694)
++|+.|++++|+++.+++..|..+++|+.|++++|. +....+..|..+++|++|++++ |.++.+++..|.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 589999999999999998889999999999999997 8888777899999999999998 99999999999999999999
Q ss_pred eccCCcccCcCchhhcCCCCCC---EEeCCCC-CCcccCccccccCCCCCCCC-eeeCCCCCCcCCCCcccccccccccc
Q psy3329 316 ILSGNKLETLESGLFQNLTHLS---VLELNNC-GLTRLNETVFHENYTYPDLE-ELRLSGNPLHVLPDSTKQYSMRTIPT 390 (694)
Q Consensus 316 ~L~~n~l~~~~~~~l~~l~~L~---~L~L~~n-~l~~~~~~~~~~~~~~~~L~-~L~Ls~n~l~~~~~~~~~~~~~~ip~ 390 (694)
++++|.+++++. +..+++|+ .|++++| .++.++...|. .+++|+ .|++++|+
T Consensus 111 ~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~---~l~~L~~~L~l~~n~------------------ 167 (239)
T 2xwt_C 111 GIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQ---GLCNETLTLKLYNNG------------------ 167 (239)
T ss_dssp EEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTT---TTBSSEEEEECCSCC------------------
T ss_pred eCCCCCCccccc--cccccccccccEEECCCCcchhhcCccccc---chhcceeEEEcCCCC------------------
Confidence 999999999775 78888888 9999999 88888776665 445555 55555554
Q ss_pred hhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCc-CCccCCCCCCCC-CC
Q psy3329 391 QIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCK-IDYLPPNVFNNT-RN 468 (694)
Q Consensus 391 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l-~~ 468 (694)
++.+++..| .. ++|+.|+|++|+ ++++++..|.++ ++
T Consensus 168 --------------------------------------l~~i~~~~~--~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~ 206 (239)
T 2xwt_C 168 --------------------------------------FTSVQGYAF--NG-TKLDAVYLNKNKYLTVIDKDAFGGVYSG 206 (239)
T ss_dssp --------------------------------------CCEECTTTT--TT-CEEEEEECTTCTTCCEECTTTTTTCSBC
T ss_pred --------------------------------------CcccCHhhc--CC-CCCCEEEcCCCCCcccCCHHHhhccccC
Confidence 444444444 33 566666666663 666666666666 66
Q ss_pred CCEEEccCCccCCCcchhhhhhcccCCCcEEECCCC
Q psy3329 469 ITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNN 504 (694)
Q Consensus 469 L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N 504 (694)
|+.|++++|+++++++. .+++|+.|+++++
T Consensus 207 L~~L~l~~N~l~~l~~~------~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 207 PSLLDVSQTSVTALPSK------GLEHLKELIARNT 236 (239)
T ss_dssp CSEEECTTCCCCCCCCT------TCTTCSEEECTTC
T ss_pred CcEEECCCCccccCChh------HhccCceeeccCc
Confidence 66666666666655442 3456666666654
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=3.5e-22 Score=201.92 Aligned_cols=193 Identities=21% Similarity=0.351 Sum_probs=109.6
Q ss_pred CCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEE
Q psy3329 236 PLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTL 315 (694)
Q Consensus 236 ~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 315 (694)
.+++|+.|++++|.++.++ .+..+++|+.|++++|.+.+..+ +..+++|++|++++|.++.+. .+..+++|+.|
T Consensus 39 ~l~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS--AIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG--GGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch--hhcCCCCCCEE
Confidence 3455666666666655554 35556666666666666555443 556666666666666665553 45566666666
Q ss_pred eccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccc
Q psy3329 316 ILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKN 395 (694)
Q Consensus 316 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~ 395 (694)
++++|.++++++ +..+++|+.|++++|.++.++. +. .+++|+.|++++|.++.++.
T Consensus 113 ~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~---~l~~L~~L~l~~n~l~~~~~----------------- 168 (308)
T 1h6u_A 113 DLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LA---GLTNLQYLSIGNAQVSDLTP----------------- 168 (308)
T ss_dssp ECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GG---GCTTCCEEECCSSCCCCCGG-----------------
T ss_pred ECCCCCCCCchh--hcCCCCCCEEECCCCccCcCcc--cc---CCCCccEEEccCCcCCCChh-----------------
Confidence 666666666543 5666666666666666665543 22 45555555555555543221
Q ss_pred cchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEcc
Q psy3329 396 FDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLA 475 (694)
Q Consensus 396 ~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 475 (694)
+.. +++|+.|++++|.++++++ + ..+++|+.|+|++|.++++++ +..+++|+.|+++
T Consensus 169 --------------l~~---l~~L~~L~l~~n~l~~~~~--l--~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~ 225 (308)
T 1h6u_A 169 --------------LAN---LSKLTTLKADDNKISDISP--L--ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225 (308)
T ss_dssp --------------GTT---CTTCCEEECCSSCCCCCGG--G--GGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEE
T ss_pred --------------hcC---CCCCCEEECCCCccCcChh--h--cCCCCCCEEEccCCccCcccc--ccCCCCCCEEEcc
Confidence 111 5555556666665555543 3 455666666666666665553 4556666666666
Q ss_pred CCccCC
Q psy3329 476 NNNLSM 481 (694)
Q Consensus 476 ~N~l~~ 481 (694)
+|.+++
T Consensus 226 ~N~i~~ 231 (308)
T 1h6u_A 226 NQTITN 231 (308)
T ss_dssp EEEEEC
T ss_pred CCeeec
Confidence 666654
No 88
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=3.6e-23 Score=214.60 Aligned_cols=271 Identities=19% Similarity=0.194 Sum_probs=135.4
Q ss_pred EEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCc----ccccCCC-CccEEeCCCCCCcccchhhcCCC-----CC
Q psy3329 218 LYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPA----NTFHRFT-CLQELDISHNPLIDAFTALLSPL-----ES 287 (694)
Q Consensus 218 L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~----~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~l-----~~ 287 (694)
+.+++|.+++..+. ++...++|++|++++|.++..+. ..+..++ +|++|++++|.+.+..+..+..+ ++
T Consensus 3 ~~ls~n~~~~~~~~-~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEE-FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHH-HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHH-HHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 44555555544322 23444446666666666665554 4444555 55555555555555433333322 55
Q ss_pred CcEEECcCCCCcccChhhhc----CC-CCCcEEeccCCcccCcCchhh----cC-CCCCCEEeCCCCCCcccCccccccC
Q psy3329 288 LEHLDMGYSNLQRISRSTFL----KM-TSLKTLILSGNKLETLESGLF----QN-LTHLSVLELNNCGLTRLNETVFHEN 357 (694)
Q Consensus 288 L~~L~L~~n~l~~~~~~~~~----~l-~~L~~L~L~~n~l~~~~~~~l----~~-l~~L~~L~L~~n~l~~~~~~~~~~~ 357 (694)
|++|+|++|.++...+..+. .+ ++|++|+|++|.++......+ .. .++|++|++++|.++......+
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l--- 158 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL--- 158 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH---
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH---
Confidence 55555555555544433222 22 455555555555554443322 12 2345555555554443222111
Q ss_pred CCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhhhhhcccccccCCCC-CCCceEEcCCCCCcccCCCC
Q psy3329 358 YTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTY-PDLEELRLSGNPLHVLPTGN 436 (694)
Q Consensus 358 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~~~ 436 (694)
+..+ .. + ++|++|++++|.+++..+..
T Consensus 159 -------------------------------~~~l------------------~~---~~~~L~~L~Ls~n~l~~~~~~~ 186 (362)
T 3goz_A 159 -------------------------------IQIL------------------AA---IPANVNSLNLRGNNLASKNCAE 186 (362)
T ss_dssp -------------------------------HHHH------------------HT---SCTTCCEEECTTSCGGGSCHHH
T ss_pred -------------------------------HHHH------------------hc---CCccccEeeecCCCCchhhHHH
Confidence 1100 00 2 25566666666555544322
Q ss_pred CC--CcCC-CCccEEEccCCcCCccCC----CCCCC-CCCCCEEEccCCccCCCcchhhh-hhcccCCCcEEECCCCccc
Q psy3329 437 LL--PPQL-SRLRSLDLSRCKIDYLPP----NVFNN-TRNITSLNLANNNLSMTSELSFQ-FLDVLLELESLDLSNNNLT 507 (694)
Q Consensus 437 ~~--~~~l-~~L~~L~Ls~n~l~~~~~----~~~~~-l~~L~~L~L~~N~l~~~~~~~~~-~l~~l~~L~~L~ls~N~l~ 507 (694)
+. ...+ ++|+.|+|++|.|+.... ..+.. .++|++|+|++|.+++..+..+. .+..+++|+.|+|++|.+.
T Consensus 187 l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~ 266 (362)
T 3goz_A 187 LAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVK 266 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHT
T ss_pred HHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCcc
Confidence 10 0223 366677777776665211 12222 34677777777777665543331 1255667777777777755
Q ss_pred ccChh-------hhcCCCcccEEEccCCccccccCcHHHHHHHHh
Q psy3329 508 HISPT-------VLRHNRAITSIKLVGNPWKCDCNIADMWEWATR 545 (694)
Q Consensus 508 ~~~~~-------~~~~~~~l~~l~l~~N~~~c~c~~~~~~~~~~~ 545 (694)
++.+. .+..+++|+.+++++|++....+. .+..|.+.
T Consensus 267 ~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~-~~~~~l~~ 310 (362)
T 3goz_A 267 NMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI-PISNLIRE 310 (362)
T ss_dssp TCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCH-HHHHHHHH
T ss_pred ccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchH-HHHHHHHH
Confidence 54432 445667788888888887765333 33444443
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=1.5e-21 Score=197.33 Aligned_cols=104 Identities=24% Similarity=0.390 Sum_probs=65.9
Q ss_pred CCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCC
Q psy3329 416 YPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLE 495 (694)
Q Consensus 416 ~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~ 495 (694)
+++|+.|++++|.++++++ + ..+++|+.|+|++|.++++++ +..+++|+.|++++|+++++.+ + ..+++
T Consensus 128 l~~L~~L~l~~n~l~~~~~--l--~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l---~~l~~ 196 (308)
T 1h6u_A 128 LSNLQVLYLDLNQITNISP--L--AGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--L---ASLPN 196 (308)
T ss_dssp CTTCCEEECCSSCCCCCGG--G--GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--G---GGCTT
T ss_pred CCCCCEEECCCCccCcCcc--c--cCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--h---cCCCC
Confidence 5556666666666555544 3 556666666666666666554 5666667777777776666544 3 56667
Q ss_pred CcEEECCCCcccccChhhhcCCCcccEEEccCCcccc
Q psy3329 496 LESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKC 532 (694)
Q Consensus 496 L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c 532 (694)
|++|++++|++++.++ +..+++|+.+++++|++.+
T Consensus 197 L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 197 LIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred CCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 7777777777766543 5666677777777776654
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=3.9e-21 Score=188.33 Aligned_cols=180 Identities=28% Similarity=0.459 Sum_probs=97.9
Q ss_pred CccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEecc
Q psy3329 239 KLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILS 318 (694)
Q Consensus 239 ~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 318 (694)
..+.++++++.++.++... . ++++.|++++|.+.+..+..+..+++|++|+|++|.++.+.+..|..+++|+.|+|+
T Consensus 15 ~~~~l~~~~~~l~~~p~~~-~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGI-P--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCSSCCSCC-C--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCccccCCCC-C--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 3445555555555554321 1 344555555555544444444444444444444444444444444444444444444
Q ss_pred CCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccch
Q psy3329 319 GNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDF 398 (694)
Q Consensus 319 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~ 398 (694)
+|.++.+++..|..+++|++|++++|+++.++...|.
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~------------------------------------------- 128 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFD------------------------------------------- 128 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-------------------------------------------
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhc-------------------------------------------
Confidence 4444444444444444444444444444333322221
Q ss_pred hhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCc
Q psy3329 399 LVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNN 478 (694)
Q Consensus 399 l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 478 (694)
. +++|+.|++++|.++++++..| ..+++|+.|+|++|.|+++++..|..+++|+.|+|++|.
T Consensus 129 -------------~---l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 129 -------------R---LTKLKELRLNTNQLQSIPAGAF--DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp -------------T---CTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred -------------c---CCcccEEECcCCcCCccCHHHc--CcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 1 5566666666666666666666 667777777777777777777777777777777777777
Q ss_pred cCCC
Q psy3329 479 LSMT 482 (694)
Q Consensus 479 l~~~ 482 (694)
+++.
T Consensus 191 ~~c~ 194 (251)
T 3m19_A 191 FDCS 194 (251)
T ss_dssp BCTT
T ss_pred eeCC
Confidence 7665
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.87 E-value=1.3e-21 Score=201.76 Aligned_cols=243 Identities=19% Similarity=0.271 Sum_probs=144.2
Q ss_pred EEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCc-ccChhhhcCCCCCcE-EeccCC
Q psy3329 243 LSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQ-RISRSTFLKMTSLKT-LILSGN 320 (694)
Q Consensus 243 L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~-L~L~~n 320 (694)
++.++++++.+|... .+++++|+|++|+++...+.+|.++++|++|+|++|.+. .+++.+|.+++++.+ +.+..|
T Consensus 14 v~C~~~~Lt~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 14 FLCQESKVTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp EEEESTTCCSCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred EEecCCCCCccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 444444454444221 134555555555555444444555555555555555543 233444555555443 334445
Q ss_pred cccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCC-CCCcCCCCcccccccccccchhccccchh
Q psy3329 321 KLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSG-NPLHVLPDSTKQYSMRTIPTQIWKNFDFL 399 (694)
Q Consensus 321 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~-n~l~~~~~~~~~~~~~~ip~~~~~~~~~l 399 (694)
+++.+++..|..+++|++|++++|+++.++...+. ....+..+++.+ +.+..++. ..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~---~~~~l~~l~l~~~~~i~~l~~------------~~------- 148 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKI---HSLQKVLLDIQDNINIHTIER------------NS------- 148 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTC---CBSSCEEEEEESCTTCCEECT------------TS-------
T ss_pred cccccCchhhhhccccccccccccccccCCchhhc---ccchhhhhhhccccccccccc------------cc-------
Confidence 55555555555556666666666655555544433 344455555543 33432221 11
Q ss_pred hhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEcc-CCcCCccCCCCCCCCCCCCEEEccCCc
Q psy3329 400 VILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLS-RCKIDYLPPNVFNNTRNITSLNLANNN 478 (694)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~L~~N~ 478 (694)
|.+ ....++.|++++|.++.+++..| ...+|+.|+++ +|.++.+++.+|.++++|+.|+|++|+
T Consensus 149 ----------f~~--~~~~l~~L~L~~N~i~~i~~~~f---~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~ 213 (350)
T 4ay9_X 149 ----------FVG--LSFESVILWLNKNGIQEIHNSAF---NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR 213 (350)
T ss_dssp ----------STT--SBSSCEEEECCSSCCCEECTTSS---TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC
T ss_pred ----------hhh--cchhhhhhccccccccCCChhhc---cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC
Confidence 111 02457788888888888887776 34678888887 477888888888999999999999999
Q ss_pred cCCCcchhhhhhcccCCCcEEECCCCc-ccccChhhhcCCCcccEEEccCCcccccc
Q psy3329 479 LSMTSELSFQFLDVLLELESLDLSNNN-LTHISPTVLRHNRAITSIKLVGNPWKCDC 534 (694)
Q Consensus 479 l~~~~~~~~~~l~~l~~L~~L~ls~N~-l~~~~~~~~~~~~~l~~l~l~~N~~~c~c 534 (694)
|+.+++..| .+|+.|.+.++. +... |. +..+++|+.+++. +++.|.|
T Consensus 214 l~~lp~~~~------~~L~~L~~l~~~~l~~l-P~-l~~l~~L~~l~l~-~~~~c~~ 261 (350)
T 4ay9_X 214 IHSLPSYGL------ENLKKLRARSTYNLKKL-PT-LEKLVALMEASLT-YPSHCCA 261 (350)
T ss_dssp CCCCCSSSC------TTCCEEECTTCTTCCCC-CC-TTTCCSCCEEECS-CHHHHHH
T ss_pred cCccChhhh------ccchHhhhccCCCcCcC-CC-chhCcChhhCcCC-CCccccc
Confidence 998776444 456666655543 4444 32 6788899999985 7777855
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=1.2e-21 Score=198.51 Aligned_cols=233 Identities=19% Similarity=0.231 Sum_probs=123.1
Q ss_pred CCcEEEcCCCCCCccchhhh--ccCCCCccEEEccCcCCCcCCcccc--cCCCCccEEeCCCCCCcccchhhcCCCCCCc
Q psy3329 214 KLRTLYLSGNPLSAADLSVA--LKPLTKLHRLSLRNCGLSRLPANTF--HRFTCLQELDISHNPLIDAFTALLSPLESLE 289 (694)
Q Consensus 214 ~L~~L~L~~n~l~~~~~~~~--l~~l~~L~~L~l~~n~i~~~~~~~~--~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 289 (694)
.++.+.+.++.++....... ...+++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+..+.
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~--------- 135 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSW--------- 135 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSS---------
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhh---------
Confidence 45566666555543322111 1122445666666665554444444 4455555555555555442210
Q ss_pred EEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcc---cCccc-cccCCCCCCCCe
Q psy3329 290 HLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTR---LNETV-FHENYTYPDLEE 365 (694)
Q Consensus 290 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~---~~~~~-~~~~~~~~~L~~ 365 (694)
+....+..+++|++|+|++|.+.++++..+..+++|++|++++|++.+ ++... +. .+++|++
T Consensus 136 -----------~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~---~l~~L~~ 201 (310)
T 4glp_A 136 -----------LAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPH---KFPAIQN 201 (310)
T ss_dssp -----------HHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTT---SSCCCCS
T ss_pred -----------hHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhh---cCCCCCE
Confidence 011223345555555555555555555555555556666666655443 11111 12 4556666
Q ss_pred eeCCCCCCcCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCC---
Q psy3329 366 LRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQL--- 442 (694)
Q Consensus 366 L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l--- 442 (694)
|++++|+++.++. ++..+ +.. +++|++|++++|.+++..|..+ ..+
T Consensus 202 L~Ls~N~l~~l~~---------~~~~l-----------------~~~---l~~L~~L~Ls~N~l~~~~p~~~--~~~~~~ 250 (310)
T 4glp_A 202 LALRNTGMETPTG---------VCAAL-----------------AAA---GVQPHSLDLSHNSLRATVNPSA--PRCMWS 250 (310)
T ss_dssp CBCCSSCCCCHHH---------HHHHH-----------------HHH---TCCCSSEECTTSCCCCCCCSCC--SSCCCC
T ss_pred EECCCCCCCchHH---------HHHHH-----------------Hhc---CCCCCEEECCCCCCCccchhhH--HhccCc
Confidence 6666666542211 01001 112 5677777777777777654444 333
Q ss_pred CCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccc
Q psy3329 443 SRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTH 508 (694)
Q Consensus 443 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~ 508 (694)
++|++|+|++|+|+.++...+ ++|++|+|++|++++++. + ..+++|+.|+|++|+++.
T Consensus 251 ~~L~~L~Ls~N~l~~lp~~~~---~~L~~L~Ls~N~l~~~~~--~---~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 251 SALNSLNLSFAGLEQVPKGLP---AKLRVLDLSSNRLNRAPQ--P---DELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp TTCCCEECCSSCCCSCCSCCC---SCCSCEECCSCCCCSCCC--T---TSCCCCSCEECSSTTTSC
T ss_pred CcCCEEECCCCCCCchhhhhc---CCCCEEECCCCcCCCCch--h---hhCCCccEEECcCCCCCC
Confidence 577777777777776655432 677777777777776522 3 556777777777777654
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=1.8e-21 Score=197.30 Aligned_cols=230 Identities=19% Similarity=0.171 Sum_probs=176.6
Q ss_pred CCccEEeCCCCCCcccchh---hcCCCCCCcEEECcCCCCcccChhhh--cCCCCCcEEeccCCcccCcCc----hhhcC
Q psy3329 262 TCLQELDISHNPLIDAFTA---LLSPLESLEHLDMGYSNLQRISRSTF--LKMTSLKTLILSGNKLETLES----GLFQN 332 (694)
Q Consensus 262 ~~L~~L~L~~n~~~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~----~~l~~ 332 (694)
..++.+.+.++.+...... .+..+++|++|++++|.+.+..+..+ ..+++|++|+|++|.+++..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3467777777766542111 11234669999999999888777777 889999999999999886433 34567
Q ss_pred CCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhhhhhccccccc
Q psy3329 333 LTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHE 412 (694)
Q Consensus 333 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~ 412 (694)
+++|++|++++|+++.+++..+. .+++|++|++++|++.... .++... .+..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~Ls~N~l~~~~---------~~~~~~----------------~~~~ 195 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVR---AFPALTSLDLSDNPGLGER---------GLMAAL----------------CPHK 195 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCC---CCTTCCEEECCSCTTCHHH---------HHHTTS----------------CTTS
T ss_pred ccCCCEEEeeCCCcchhhHHHhc---cCCCCCEEECCCCCCccch---------hhhHHH----------------hhhc
Confidence 89999999999999999888887 8999999999999875210 011000 0122
Q ss_pred CCCCCCCceEEcCCCCCcccCCC---CCCCcCCCCccEEEccCCcCCccCCCCCCCC---CCCCEEEccCCccCCCcchh
Q psy3329 413 NYTYPDLEELRLSGNPLHVLPTG---NLLPPQLSRLRSLDLSRCKIDYLPPNVFNNT---RNITSLNLANNNLSMTSELS 486 (694)
Q Consensus 413 ~~~~~~L~~L~Ls~n~l~~~~~~---~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~L~~N~l~~~~~~~ 486 (694)
+++|++|++++|.++.++.. .+ ..+++|++|+|++|.|++..|..+..+ ++|++|+|++|+++.+ |..
T Consensus 196 ---l~~L~~L~Ls~N~l~~l~~~~~~l~--~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~ 269 (310)
T 4glp_A 196 ---FPAIQNLALRNTGMETPTGVCAALA--AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV-PKG 269 (310)
T ss_dssp ---SCCCCSCBCCSSCCCCHHHHHHHHH--HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC-CSC
T ss_pred ---CCCCCEEECCCCCCCchHHHHHHHH--hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCch-hhh
Confidence 88999999999999865442 23 577999999999999999866666666 6999999999999965 444
Q ss_pred hhhhcccCCCcEEECCCCcccccChhhhcCCCcccEEEccCCcccc
Q psy3329 487 FQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKC 532 (694)
Q Consensus 487 ~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c 532 (694)
+ .++|+.|+|++|++++++. +..+++|+.|++++|++..
T Consensus 270 ~-----~~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 270 L-----PAKLRVLDLSSNRLNRAPQ--PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp C-----CSCCSCEECCSCCCCSCCC--TTSCCCCSCEECSSTTTSC
T ss_pred h-----cCCCCEEECCCCcCCCCch--hhhCCCccEEECcCCCCCC
Confidence 3 3799999999999998632 5778999999999999863
No 94
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.85 E-value=9.3e-21 Score=177.06 Aligned_cols=146 Identities=25% Similarity=0.421 Sum_probs=129.6
Q ss_pred CCCCceEEcCCCCCcccCCC-CCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccC
Q psy3329 416 YPDLEELRLSGNPLHVLPTG-NLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLL 494 (694)
Q Consensus 416 ~~~L~~L~Ls~n~l~~~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~ 494 (694)
...+++|++++|.++++++. .| ..+++|++|+|++|.|+++++..|.++++|++|+|++|+|+++.+..| ..++
T Consensus 28 ~~~l~~L~l~~n~i~~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~l~ 102 (192)
T 1w8a_A 28 PLHTTELLLNDNELGRISSDGLF--GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMF---LGLH 102 (192)
T ss_dssp CTTCSEEECCSCCCCSBCCSCSG--GGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSS---TTCT
T ss_pred CCCCCEEECCCCcCCccCCcccc--ccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHh---cCCC
Confidence 45899999999999999875 46 899999999999999999999999999999999999999999998888 8899
Q ss_pred CCcEEECCCCcccccChhhhcCCCcccEEEccCCccccccCcHHHHHHHHhccCCCceeecCCCCccccccc
Q psy3329 495 ELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEWATREKGDIGVLVGSTTPTEIGFGA 566 (694)
Q Consensus 495 ~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (694)
+|++|+|++|++++.+|..+..+++|+.+++++|+|.|+|++.|+..|+.........+.|..|....+..+
T Consensus 103 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~~l~~~~l 174 (192)
T 1w8a_A 103 QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQI 174 (192)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSSTTTTTSBG
T ss_pred CCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCChHHcCCCh
Confidence 999999999999999999999999999999999999999999999999987554445555666655555443
No 95
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.85 E-value=9.5e-21 Score=176.85 Aligned_cols=125 Identities=29% Similarity=0.498 Sum_probs=118.0
Q ss_pred CCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCC
Q psy3329 416 YPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLE 495 (694)
Q Consensus 416 ~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~ 495 (694)
.+.+++|++++|.++.++ ..| ..+++|+.|+|++|.|+++++..|.++++|++|+|++|+|+++.+..| ..+++
T Consensus 30 ~~~l~~L~L~~n~i~~ip-~~~--~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f---~~l~~ 103 (193)
T 2wfh_A 30 PRDVTELYLDGNQFTLVP-KEL--SNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTF---DGLKS 103 (193)
T ss_dssp CTTCCEEECCSSCCCSCC-GGG--GGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTT---TTCTT
T ss_pred CCCCCEEECCCCcCchhH-HHh--hcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHh---CCCCC
Confidence 568999999999999776 566 899999999999999999999999999999999999999999999888 89999
Q ss_pred CcEEECCCCcccccChhhhcCCCcccEEEccCCccccccCcHHHHHHHHhc
Q psy3329 496 LESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEWATRE 546 (694)
Q Consensus 496 L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~~~~~~~~~~~~ 546 (694)
|+.|+|++|+++++++..+..+++|+.+++++|||.|+|.+.|+..|....
T Consensus 104 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~~ 154 (193)
T 2wfh_A 104 LRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSE 154 (193)
T ss_dssp CCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHS
T ss_pred CCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHHHHHHHhc
Confidence 999999999999999988999999999999999999999999999999874
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=9.3e-21 Score=195.38 Aligned_cols=239 Identities=25% Similarity=0.313 Sum_probs=179.9
Q ss_pred eEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCC-ccCCCCCCCCCCCCE-EeCCC
Q psy3329 20 ITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLR-IIEPGVFDPLTSLEY-LMLNR 97 (694)
Q Consensus 20 ~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~-~~~~~~~~~l~~L~~-L~L~~ 97 (694)
++++.++++++.||..+ .+++++|+|++|+|+.+.+.+|.++++|++|+|++|++. .+++.+|.++++|++ +.++.
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 57899999999999655 468999999999999998889999999999999999985 477778999998876 66677
Q ss_pred CcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccC-CCCCCCCccccCCCC-CCcEEeCCCCCCC
Q psy3329 98 CNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQ-SGISNLPDNVFANNT-WLRNLNLAENELI 175 (694)
Q Consensus 98 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~~~-~L~~L~l~~n~l~ 175 (694)
|+++.+.+.+|..+++|++|++++|.+..+.. ..+....++..|++.+ +.+..++...|..+. .++.|++++|.++
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~--~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPD--VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCC--CTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred CcccccCchhhhhccccccccccccccccCCc--hhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 89999999999999999999999999986544 3344566778888865 678888877777764 5888899998888
Q ss_pred CcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCc-CCCcCC
Q psy3329 176 DLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNC-GLSRLP 254 (694)
Q Consensus 176 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n-~i~~~~ 254 (694)
.++...+ ...+|+.+++.++...+.++.+.|..+++|+.|++++|+++..+. ..+.+|+.|.+.++ +++.+|
T Consensus 168 ~i~~~~f---~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~----~~~~~L~~L~~l~~~~l~~lP 240 (350)
T 4ay9_X 168 EIHNSAF---NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS----YGLENLKKLRARSTYNLKKLP 240 (350)
T ss_dssp EECTTSS---TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS----SSCTTCCEEECTTCTTCCCCC
T ss_pred CCChhhc---cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh----hhhccchHhhhccCCCcCcCC
Confidence 7655444 345778888875443377777777777777777777777766543 22445555554443 444554
Q ss_pred cccccCCCCccEEeCCC
Q psy3329 255 ANTFHRFTCLQELDISH 271 (694)
Q Consensus 255 ~~~~~~~~~L~~L~L~~ 271 (694)
.+..+++|+.+++.+
T Consensus 241 --~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 241 --TLEKLVALMEASLTY 255 (350)
T ss_dssp --CTTTCCSCCEEECSC
T ss_pred --CchhCcChhhCcCCC
Confidence 255566666666654
No 97
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.84 E-value=4e-21 Score=199.18 Aligned_cols=259 Identities=18% Similarity=0.207 Sum_probs=147.0
Q ss_pred EEECcCCCCcchh-hhhhcCCCCcEEEccCCcCCccCh----hhccCCC-CCCeEECCCCCCCccCCCCCCCC-----CC
Q psy3329 21 TINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINP----QFFTNLT-TLNKLDLSGNPLRIIEPGVFDPL-----TS 89 (694)
Q Consensus 21 ~L~Ls~~~l~~i~-~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~l~-~L~~L~Ls~n~~~~~~~~~~~~l-----~~ 89 (694)
.+.++.+.++... ..+...++|++|++++|.++...+ .+|..++ +|++|+|++|.++...+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 4677888888544 545555558888888888888776 6677777 78888888888876655545543 77
Q ss_pred CCEEeCCCCcCCccChhhh----cCC-CCCCEEECCCCcCCccch--hhhhhcC-CCCCCEEEccCCCCCCCCcccc---
Q psy3329 90 LEYLMLNRCNLTYISPSAF----DNL-NHLKTLELSQNKLKSHID--WTLVLGN-LGKLDTLDLRQSGISNLPDNVF--- 158 (694)
Q Consensus 90 L~~L~L~~n~l~~~~~~~l----~~l-~~L~~L~l~~n~l~~~~~--~~~~~~~-l~~L~~L~L~~n~i~~~~~~~~--- 158 (694)
|++|+|++|.+++..+..+ ..+ ++|+.|++++|.++..+. +...+.. .++|++|++++|.++......+
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 8888888888777666533 334 678888888887765432 2223444 2577777777777764443222
Q ss_pred -CCCC-CCcEEeCCCCCCCCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcC-CCCcEEEcCCCCCCccchh---h
Q psy3329 159 -ANNT-WLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNA-TKLRTLYLSGNPLSAADLS---V 232 (694)
Q Consensus 159 -~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~---~ 232 (694)
...+ +|++|++++|.+++.....+. ..+..+ ++|+.|+|++|.+++.... .
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~-----------------------~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~ 218 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELA-----------------------KFLASIPASVTSLDLSANLLGLKSYAELAY 218 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHH-----------------------HHHHTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred HhcCCccccEeeecCCCCchhhHHHHH-----------------------HHHHhCCCCCCEEECCCCCCChhHHHHHHH
Confidence 2333 566666666655443321111 112222 2444555544444432211 1
Q ss_pred hccC-CCCccEEEccCcCCCcCCc----ccccCCCCccEEeCCCCCCcc-------cchhhcCCCCCCcEEECcCCCCcc
Q psy3329 233 ALKP-LTKLHRLSLRNCGLSRLPA----NTFHRFTCLQELDISHNPLID-------AFTALLSPLESLEHLDMGYSNLQR 300 (694)
Q Consensus 233 ~l~~-l~~L~~L~l~~n~i~~~~~----~~~~~~~~L~~L~L~~n~~~~-------~~~~~~~~l~~L~~L~L~~n~l~~ 300 (694)
.+.. .++|++|++++|.++.... ..+..+++|+.|++++|.+.+ .++..+..+++|+.|++++|.+..
T Consensus 219 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 219 IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp HHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred HHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 1111 2355555555555544332 122344555555555554222 123345566677777777777665
Q ss_pred cC
Q psy3329 301 IS 302 (694)
Q Consensus 301 ~~ 302 (694)
..
T Consensus 299 ~~ 300 (362)
T 3goz_A 299 SH 300 (362)
T ss_dssp GG
T ss_pred cc
Confidence 43
No 98
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=1.2e-21 Score=205.30 Aligned_cols=103 Identities=17% Similarity=0.165 Sum_probs=49.4
Q ss_pred CCcchhhhhhcCCCCcEEEccCCcCCccChhh----ccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCcCCcc
Q psy3329 28 PIQPVEGAFLVARSLLYLYMQECTLSKINPQF----FTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYI 103 (694)
Q Consensus 28 ~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 103 (694)
.+..++..+..+++|++|++++|.+....+.. +..+++|++|+|++|.+.. +.+.
T Consensus 20 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~---------------------l~~~ 78 (386)
T 2ca6_A 20 DEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGR---------------------VKDE 78 (386)
T ss_dssp HHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTS---------------------CGGG
T ss_pred HHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCc---------------------cccc
Confidence 33344455555666666666666555443222 3445555555555543322 1111
Q ss_pred Chh-------hhcCCCCCCEEECCCCcCCccc--hhhhhhcCCCCCCEEEccCCCCC
Q psy3329 104 SPS-------AFDNLNHLKTLELSQNKLKSHI--DWTLVLGNLGKLDTLDLRQSGIS 151 (694)
Q Consensus 104 ~~~-------~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~~l~~L~~L~L~~n~i~ 151 (694)
.|. ++..+++|++|++++|.+...+ .++..+..+++|++|+|++|.++
T Consensus 79 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 79 IPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp SHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred hhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence 222 2345555555555555554321 23344455555555555555543
No 99
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.84 E-value=6.8e-20 Score=176.45 Aligned_cols=124 Identities=31% Similarity=0.555 Sum_probs=113.7
Q ss_pred CCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCC
Q psy3329 416 YPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLE 495 (694)
Q Consensus 416 ~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~ 495 (694)
+++|+.|+|++|.++.+++..| ..+++|+.|+|++|+|+++++..|..+++|+.|+|++|+|+.+ |..+ ..+++
T Consensus 63 l~~L~~L~L~~N~l~~i~~~~~--~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~---~~l~~ 136 (229)
T 3e6j_A 63 LINLKELYLGSNQLGALPVGVF--DSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTEL-PRGI---ERLTH 136 (229)
T ss_dssp CTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSC-CTTG---GGCTT
T ss_pred ccCCcEEECCCCCCCCcChhhc--ccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccccc-Cccc---ccCCC
Confidence 7788888888888888888877 8899999999999999999999999999999999999999955 5555 88999
Q ss_pred CcEEECCCCcccccChhhhcCCCcccEEEccCCccccccC-cHHHHHHHHh
Q psy3329 496 LESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCN-IADMWEWATR 545 (694)
Q Consensus 496 L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~-~~~~~~~~~~ 545 (694)
|+.|+|++|+++++++..+..+++|+.+++++|||.|+|+ +.|+..|+..
T Consensus 137 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~l~~~~~~ 187 (229)
T 3e6j_A 137 LTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDIMYLRNWVAD 187 (229)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGGGHHHHHHHHH
T ss_pred CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcchhHHHHHHHHh
Confidence 9999999999999988889999999999999999999996 8999999876
No 100
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=8e-22 Score=206.67 Aligned_cols=244 Identities=20% Similarity=0.191 Sum_probs=135.9
Q ss_pred CCCCCCCCEEeCCCCcCCccCh----hhhcCCCCCCEEECCCCcCCccc--------hhhhhhcCCCCCCEEEccCCCCC
Q psy3329 84 FDPLTSLEYLMLNRCNLTYISP----SAFDNLNHLKTLELSQNKLKSHI--------DWTLVLGNLGKLDTLDLRQSGIS 151 (694)
Q Consensus 84 ~~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~l~~n~l~~~~--------~~~~~~~~l~~L~~L~L~~n~i~ 151 (694)
+..+++|++|+|++|.+....+ ..+.++++|+.|++++|.+..+. .+...+..+++|++|+|++|.+.
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 3345555556665555554322 23455666666666665443221 12223456677777777776666
Q ss_pred CC----CccccCCCCCCcEEeCCCCCCCCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcC---------CCCcEE
Q psy3329 152 NL----PDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNA---------TKLRTL 218 (694)
Q Consensus 152 ~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~---------~~L~~L 218 (694)
.. .+..+..+++|++|++++|.+.......+. ..+..+ ++|++|
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~-----------------------~~l~~l~~~~~~~~~~~L~~L 164 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA-----------------------RALQELAVNKKAKNAPPLRSI 164 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHH-----------------------HHHHHHHHHHHHHTCCCCCEE
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHH-----------------------HHHHHHhhhhhcccCCCCcEE
Confidence 52 222345555566666655554322111110 112222 666666
Q ss_pred EcCCCCCCccchh---hhccCCCCccEEEccCcCCCc-----CCcccccCCCCccEEeCCCCCCc----ccchhhcCCCC
Q psy3329 219 YLSGNPLSAADLS---VALKPLTKLHRLSLRNCGLSR-----LPANTFHRFTCLQELDISHNPLI----DAFTALLSPLE 286 (694)
Q Consensus 219 ~L~~n~l~~~~~~---~~l~~l~~L~~L~l~~n~i~~-----~~~~~~~~~~~L~~L~L~~n~~~----~~~~~~~~~l~ 286 (694)
++++|.++..... ..+..+++|+.|++++|.++. +.+..+..+++|+.|+|++|.++ ..++..+..++
T Consensus 165 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~ 244 (386)
T 2ca6_A 165 ICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 244 (386)
T ss_dssp ECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT
T ss_pred ECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCC
Confidence 6666666543332 234456667777777666652 22224566677777777777765 45566666777
Q ss_pred CCcEEECcCCCCcccC----hhhhc--CCCCCcEEeccCCcccC-----cCchhhcCCCCCCEEeCCCCCCcccC
Q psy3329 287 SLEHLDMGYSNLQRIS----RSTFL--KMTSLKTLILSGNKLET-----LESGLFQNLTHLSVLELNNCGLTRLN 350 (694)
Q Consensus 287 ~L~~L~L~~n~l~~~~----~~~~~--~l~~L~~L~L~~n~l~~-----~~~~~l~~l~~L~~L~L~~n~l~~~~ 350 (694)
+|++|+|++|.++... +..+. .+++|+.|+|++|.++. ++...+..+++|+.|++++|.+++..
T Consensus 245 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 245 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp TCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 7777777777776542 23332 26777777777777766 33332255677777777777776654
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=1.3e-20 Score=203.98 Aligned_cols=212 Identities=27% Similarity=0.293 Sum_probs=109.5
Q ss_pred CccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEecc
Q psy3329 239 KLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILS 318 (694)
Q Consensus 239 ~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 318 (694)
+|+.|++++|++++++... +++|+.|++++|.+.. +| ..+++|++|+|++|.+++++. +.+ +|+.|+|+
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l---~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL---PPQITVLEITQNALIS-LP---ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC---CTTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCccCHhH---cCCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCCcch--hhc--CCCEEECC
Confidence 6667777777666655432 2456666666666653 22 234555555555555555443 322 55555555
Q ss_pred CCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccch
Q psy3329 319 GNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDF 398 (694)
Q Consensus 319 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~ 398 (694)
+|.+++++. .+++|+.|++++|.++.++. .
T Consensus 129 ~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~-------~--------------------------------------- 158 (571)
T 3cvr_A 129 NNQLTMLPE----LPALLEYINADNNQLTMLPE-------L--------------------------------------- 158 (571)
T ss_dssp SSCCSCCCC----CCTTCCEEECCSSCCSCCCC-------C---------------------------------------
T ss_pred CCcCCCCCC----cCccccEEeCCCCccCcCCC-------c---------------------------------------
Confidence 555555433 34455555555555444332 1
Q ss_pred hhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCC-------CE
Q psy3329 399 LVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNI-------TS 471 (694)
Q Consensus 399 l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-------~~ 471 (694)
+++|+.|++++|.+++++. + . ++|+.|+|++|.|+.++. |.. +| +.
T Consensus 159 -----------------l~~L~~L~Ls~N~L~~lp~--l--~--~~L~~L~Ls~N~L~~lp~--~~~--~L~~~~~~L~~ 211 (571)
T 3cvr_A 159 -----------------PTSLEVLSVRNNQLTFLPE--L--P--ESLEALDVSTNLLESLPA--VPV--RNHHSEETEIF 211 (571)
T ss_dssp -----------------CTTCCEEECCSSCCSCCCC--C--C--TTCCEEECCSSCCSSCCC--CC----------CCEE
T ss_pred -----------------CCCcCEEECCCCCCCCcch--h--h--CCCCEEECcCCCCCchhh--HHH--hhhcccccceE
Confidence 4455555555555555443 3 2 556666666666665544 332 44 66
Q ss_pred EEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcc-------cEEEcc-------CCccccccCcH
Q psy3329 472 LNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAI-------TSIKLV-------GNPWKCDCNIA 537 (694)
Q Consensus 472 L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l-------~~l~l~-------~N~~~c~c~~~ 537 (694)
|+|++|+|+.+++ .+ ..+++|+.|+|++|.+++.+|..+..+... ..++++ .+| .|+|...
T Consensus 212 L~Ls~N~l~~lp~-~l---~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~p-~~~~~~~ 286 (571)
T 3cvr_A 212 FRCRENRITHIPE-NI---LSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRP-LADAVTA 286 (571)
T ss_dssp EECCSSCCCCCCG-GG---GGSCTTEEEECCSSSCCHHHHHHHHHHHHSCC---CEEECCC----------C-CSHHHHT
T ss_pred EecCCCcceecCH-HH---hcCCCCCEEEeeCCcCCCcCHHHHHHhhcCccccCCeeEEeeccccccccccc-chhhHHH
Confidence 6666666665433 22 346666666666666666555544432211 112222 245 6999888
Q ss_pred HHHHHH
Q psy3329 538 DMWEWA 543 (694)
Q Consensus 538 ~~~~~~ 543 (694)
|+..+.
T Consensus 287 Wl~~~~ 292 (571)
T 3cvr_A 287 WFPENK 292 (571)
T ss_dssp TCC---
T ss_pred Hhhhhc
Confidence 876554
No 102
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=2.5e-21 Score=199.04 Aligned_cols=236 Identities=22% Similarity=0.252 Sum_probs=99.8
Q ss_pred CCCCEEeCCCCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEE
Q psy3329 88 TSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNL 167 (694)
Q Consensus 88 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L 167 (694)
++++.|++++|.+.+..+. +..+++|+.|++++|.+.. ..++..+..+++|++|++++|.++...+..+..+++|++|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~-~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEV-STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECH-HHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCH-HHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence 4455555555555444332 3345555555555555432 1133445555555555555555443333344444555555
Q ss_pred eCCCC-CCCCcchhhhcccCCCcccEEeCCCC-CCCCCCChhhhhcCC-CCcEEEcCCC--CCCccchhhhccCCCCccE
Q psy3329 168 NLAEN-ELIDLDVATTLGQNLVHLDSLDLSNC-HLKGPLSEDAFVNAT-KLRTLYLSGN--PLSAADLSVALKPLTKLHR 242 (694)
Q Consensus 168 ~l~~n-~l~~~~~~~~~~~~~~~L~~L~l~~n-~~~~~~~~~~~~~~~-~L~~L~L~~n--~l~~~~~~~~l~~l~~L~~ 242 (694)
++++| .+++........ .+++|++|++++| .+.+......+..++ +|++|++++| .+++.....
T Consensus 148 ~L~~~~~l~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~---------- 216 (336)
T 2ast_B 148 NLSGCSGFSEFALQTLLS-SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST---------- 216 (336)
T ss_dssp ECTTCBSCCHHHHHHHHH-HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH----------
T ss_pred ECCCCCCCCHHHHHHHHh-cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH----------
Confidence 55554 232211111111 2333444444443 332110112233444 4444444444 222222222
Q ss_pred EEccCcCCCcCCcccccCCCCccEEeCCCCC-CcccchhhcCCCCCCcEEECcCCC-CcccChhhhcCCCCCcEEeccCC
Q psy3329 243 LSLRNCGLSRLPANTFHRFTCLQELDISHNP-LIDAFTALLSPLESLEHLDMGYSN-LQRISRSTFLKMTSLKTLILSGN 320 (694)
Q Consensus 243 L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~-~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n 320 (694)
.+..+++|+.|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++|
T Consensus 217 --------------~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 217 --------------LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp --------------HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred --------------HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 23344445555555554 333333344445555555555552 22111123455566666666655
Q ss_pred cccCcCchhhcCCCCCCEEeCCCCCCcccCccc
Q psy3329 321 KLETLESGLFQNLTHLSVLELNNCGLTRLNETV 353 (694)
Q Consensus 321 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 353 (694)
+.......+. ..+..|++++|.++++.+..
T Consensus 283 -i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 283 -VPDGTLQLLK--EALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp -SCTTCHHHHH--HHSTTSEESCCCSCCTTCSS
T ss_pred -cCHHHHHHHH--hhCcceEEecccCccccCCc
Confidence 2221111111 22444555666666544433
No 103
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.83 E-value=4.6e-21 Score=197.08 Aligned_cols=255 Identities=19% Similarity=0.204 Sum_probs=133.0
Q ss_pred CcEEEccCCcCCccChhhccCC--CCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCcCCcc-ChhhhcCCCCCCEEE
Q psy3329 42 LLYLYMQECTLSKINPQFFTNL--TTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYI-SPSAFDNLNHLKTLE 118 (694)
Q Consensus 42 L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~ 118 (694)
++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+++. .+..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 455555554433 3334444 5555555555555554443 33455555555555555442 344455555555555
Q ss_pred CCCCcCCccchhhhhhcCCCCCCEEEccCC-CCCCC-CccccCCCCCCcEEeCCCC-CCCCcchhhhcccCCC-cccEEe
Q psy3329 119 LSQNKLKSHIDWTLVLGNLGKLDTLDLRQS-GISNL-PDNVFANNTWLRNLNLAEN-ELIDLDVATTLGQNLV-HLDSLD 194 (694)
Q Consensus 119 l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~i~~~-~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~-~L~~L~ 194 (694)
+++|.++. ..+..+..+++|++|++++| .++.. .+..+..+++|++|++++| .+++........ .++ +|++|+
T Consensus 125 L~~~~l~~--~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-~l~~~L~~L~ 201 (336)
T 2ast_B 125 LEGLRLSD--PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA-HVSETITQLN 201 (336)
T ss_dssp CTTCBCCH--HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH-HSCTTCCEEE
T ss_pred CcCcccCH--HHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH-hcccCCCEEE
Confidence 55555442 33344555555555555555 34321 2223445555666666655 544322222222 455 666666
Q ss_pred CCCC--CCCCCCChhhhhcCCCCcEEEcCCCC-CCccchhhhccCCCCccEEEccCcC-CCcCCcccccCCCCccEEeCC
Q psy3329 195 LSNC--HLKGPLSEDAFVNATKLRTLYLSGNP-LSAADLSVALKPLTKLHRLSLRNCG-LSRLPANTFHRFTCLQELDIS 270 (694)
Q Consensus 195 l~~n--~~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~l~~l~~L~~L~l~~n~-i~~~~~~~~~~~~~L~~L~L~ 270 (694)
+++| .++...-...+..+++|+.|++++|. +++..+. .+..+++|+.|++++|. +.......+..+++|+.|+++
T Consensus 202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 280 (336)
T 2ast_B 202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF 280 (336)
T ss_dssp CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH-HHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEecc
Confidence 6666 33211112345567777777777776 4444333 34666777777777773 332222246667777777777
Q ss_pred CCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhc
Q psy3329 271 HNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFL 307 (694)
Q Consensus 271 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 307 (694)
+| +.......+. .++..|+++.|.++++.+..++
T Consensus 281 ~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 281 GI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp TS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCS
T ss_pred Cc-cCHHHHHHHH--hhCcceEEecccCccccCCccc
Confidence 77 4332212221 2345555777777776665544
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=1.2e-18 Score=165.39 Aligned_cols=125 Identities=33% Similarity=0.581 Sum_probs=113.1
Q ss_pred CCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCC
Q psy3329 416 YPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLE 495 (694)
Q Consensus 416 ~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~ 495 (694)
+++|++|++++|.++++++..| ..+++|++|+|++|.++++++..|.++++|++|++++|+++++.+..| ..+++
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~---~~l~~ 125 (208)
T 2o6s_A 51 LTSLTQLYLGGNKLQSLPNGVF--NKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVF---DKLTQ 125 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT---TTCTT
T ss_pred cccCcEEECCCCccCccChhhc--CCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHh---ccCCc
Confidence 7788888888888888888777 889999999999999999999889999999999999999999888777 88999
Q ss_pred CcEEECCCCcccccChhhhcCCCcccEEEccCCccccccC-cHHHHHHHHh
Q psy3329 496 LESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCN-IADMWEWATR 545 (694)
Q Consensus 496 L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~-~~~~~~~~~~ 545 (694)
|+.|++++|+++++++..+..+++|+.+++++|++.|+|+ +.++..|...
T Consensus 126 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~L~~~~n~ 176 (208)
T 2o6s_A 126 LKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINK 176 (208)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTTTTHHHHHHHHH
T ss_pred CCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCCCHHHHHHHHHh
Confidence 9999999999999888888999999999999999999997 6777777765
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=3.4e-19 Score=169.17 Aligned_cols=174 Identities=30% Similarity=0.391 Sum_probs=152.8
Q ss_pred eEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCc
Q psy3329 20 ITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCN 99 (694)
Q Consensus 20 ~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~ 99 (694)
+.++++++.++.+|..+ .++|++|++++|.++.+.+..|..+++|++|++++|+++.+++..|..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 57889999999998544 5689999999999999988889999999999999999999988888999999999999999
Q ss_pred CCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCCcch
Q psy3329 100 LTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDV 179 (694)
Q Consensus 100 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 179 (694)
++++++..|..+++|++|++++|.++.+.. ..+.++++|++|++++|.++.+++..+..+++|++|++++|.+..
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--- 162 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPD--GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--- 162 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC---
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCH--hHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec---
Confidence 999988889999999999999999986443 457889999999999999999998888999999999999997653
Q ss_pred hhhcccCCCcccEEeCCCCCCCCCCCh
Q psy3329 180 ATTLGQNLVHLDSLDLSNCHLKGPLSE 206 (694)
Q Consensus 180 ~~~~~~~~~~L~~L~l~~n~~~~~~~~ 206 (694)
.++.|++|+++.|.+.+.+|.
T Consensus 163 ------~~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 163 ------TCPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp ------CTTTTHHHHHHHHHCTTTBBC
T ss_pred ------CCCCHHHHHHHHHhCCceeec
Confidence 567788888888888777774
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=2.7e-19 Score=178.98 Aligned_cols=172 Identities=23% Similarity=0.380 Sum_probs=93.5
Q ss_pred CCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCC
Q psy3329 285 LESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLE 364 (694)
Q Consensus 285 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~ 364 (694)
+++|++|++++|.+..+. .+..+++|+.|++++|.++++.+ +..+++|+.|++++|.++.++. +. .+++|+
T Consensus 45 l~~L~~L~l~~~~i~~~~--~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~---~l~~L~ 115 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS--LK---DLKKLK 115 (291)
T ss_dssp HHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG--GT---TCTTCC
T ss_pred cCcccEEEccCCCcccCh--hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh--hc---cCCCCC
Confidence 344444444444444442 24445555555555555554443 4455555555555555544332 22 445555
Q ss_pred eeeCCCCCCcCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCC
Q psy3329 365 ELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSR 444 (694)
Q Consensus 365 ~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~ 444 (694)
.|++++|+++.++. +.. +++|+.|++++|.++++ ..+ ..+++
T Consensus 116 ~L~L~~n~i~~~~~-------------------------------l~~---l~~L~~L~l~~n~l~~~--~~l--~~l~~ 157 (291)
T 1h6t_A 116 SLSLEHNGISDING-------------------------------LVH---LPQLESLYLGNNKITDI--TVL--SRLTK 157 (291)
T ss_dssp EEECTTSCCCCCGG-------------------------------GGG---CTTCCEEECCSSCCCCC--GGG--GGCTT
T ss_pred EEECCCCcCCCChh-------------------------------hcC---CCCCCEEEccCCcCCcc--hhh--ccCCC
Confidence 55555555443211 111 55666666666666655 233 56666
Q ss_pred ccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccC
Q psy3329 445 LRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHIS 510 (694)
Q Consensus 445 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~ 510 (694)
|+.|++++|.++++++ +..+++|+.|++++|+++++.. + ..+++|+.|++++|+++..+
T Consensus 158 L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~~--l---~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 158 LDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA--L---AGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp CSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGG--G---TTCTTCSEEEEEEEEEECCC
T ss_pred CCEEEccCCccccchh--hcCCCccCEEECCCCcCCCChh--h---ccCCCCCEEECcCCcccCCc
Confidence 7777777777766655 5666777777777777666421 3 56667777777777666543
No 107
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.78 E-value=5.5e-19 Score=180.48 Aligned_cols=284 Identities=19% Similarity=0.298 Sum_probs=146.3
Q ss_pred CCCCcEEEccCCcCCccChhhccC-CCCCCeEECCCCCCC--ccCCCCCCCCCCCCEEeCCCCcCCccChhhhcC-----
Q psy3329 39 ARSLLYLYMQECTLSKINPQFFTN-LTTLNKLDLSGNPLR--IIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDN----- 110 (694)
Q Consensus 39 ~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~----- 110 (694)
+.+++.|.++++ +.......+.. +++|+.|||++|++. ......+. .++.+.+..+ .++..+|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~---~~~~~~~~~~---~I~~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYP---NGKFYIYMAN---FVPAYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSG---GGCCEEECTT---EECTTTTEEEETTE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcccccc---cccccccccc---ccCHHHhccccccc
Confidence 344555655542 22111122223 566666666666665 33322222 1333333333 333445555
Q ss_pred ---CCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCC----CCcchhhhc
Q psy3329 111 ---LNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENEL----IDLDVATTL 183 (694)
Q Consensus 111 ---l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l----~~~~~~~~~ 183 (694)
|++|+.|++.+ .++.++. ..|.+|++|+.+++++|.+..+++.+|..+.++..+....+.. ..+....+.
T Consensus 97 ~~g~~~L~~l~L~~-~i~~I~~--~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~ 173 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIKNIED--AAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFI 173 (329)
T ss_dssp EEECTTCCC-CBCT-TCCEECT--TTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEE
T ss_pred ccccCCCcEEECCc-cccchhH--HHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccc
Confidence 66666666666 5554443 4566666666666666666666666666666666555544211 111111111
Q ss_pred ccCCCccc-EEeCCCCCCCCCCChhhhhc---CCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCccccc
Q psy3329 184 GQNLVHLD-SLDLSNCHLKGPLSEDAFVN---ATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFH 259 (694)
Q Consensus 184 ~~~~~~L~-~L~l~~n~~~~~~~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~ 259 (694)
.+..|+ .+.+... +.++...+.. ..+++.+.+.++ +...........+++|+.+++++|+++.++..+|.
T Consensus 174 --~~~~L~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~ 247 (329)
T 3sb4_A 174 --EGEPLETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFA 247 (329)
T ss_dssp --ESCCCEEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTT
T ss_pred --cccccceeEEecCC---CcHHHHHhhcccCccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhh
Confidence 233333 2333221 1222222211 334455555443 22222221222356677777776667766666676
Q ss_pred CCCCccEEeCCCCCCcccchhhcCCCCCCc-EEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCE
Q psy3329 260 RFTCLQELDISHNPLIDAFTALLSPLESLE-HLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSV 338 (694)
Q Consensus 260 ~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 338 (694)
+|++|+.+++.+| +..+...+|.++++|+ .+++.. .++.+.+.+|.+|++|+.+++++|.+..+....|.++++|+.
T Consensus 248 ~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ 325 (329)
T 3sb4_A 248 QKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKL 325 (329)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCE
T ss_pred CCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhh
Confidence 6767777776665 5555556666666666 666665 566666666666666666666666666666666666666666
Q ss_pred Ee
Q psy3329 339 LE 340 (694)
Q Consensus 339 L~ 340 (694)
+.
T Consensus 326 ly 327 (329)
T 3sb4_A 326 IY 327 (329)
T ss_dssp EE
T ss_pred hc
Confidence 54
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=7.6e-19 Score=175.71 Aligned_cols=175 Identities=21% Similarity=0.320 Sum_probs=106.9
Q ss_pred cCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcE
Q psy3329 235 KPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKT 314 (694)
Q Consensus 235 ~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 314 (694)
..+++|+.|++++|.+..++ .+..+++|+.|++++|.+.+..+ +..+++|++|++++|.++.+. .+..+++|+.
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~--~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS--SLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGG--GGTTCTTCCE
T ss_pred hhcCcccEEEccCCCcccCh--hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCCh--hhccCCCCCE
Confidence 34456666666666666553 25555666666666665555433 555555555555555555433 2444555555
Q ss_pred EeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhcc
Q psy3329 315 LILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWK 394 (694)
Q Consensus 315 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~ 394 (694)
|++++|.+.++. .+.. +++|+.|++++|+++.++.
T Consensus 117 L~L~~n~i~~~~--~l~~---------------------------l~~L~~L~l~~n~l~~~~~---------------- 151 (291)
T 1h6t_A 117 LSLEHNGISDIN--GLVH---------------------------LPQLESLYLGNNKITDITV---------------- 151 (291)
T ss_dssp EECTTSCCCCCG--GGGG---------------------------CTTCCEEECCSSCCCCCGG----------------
T ss_pred EECCCCcCCCCh--hhcC---------------------------CCCCCEEEccCCcCCcchh----------------
Confidence 555555544432 2344 4455555555554443210
Q ss_pred ccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEc
Q psy3329 395 NFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNL 474 (694)
Q Consensus 395 ~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 474 (694)
+.. +++|+.|++++|.++++++ + ..+++|+.|+|++|.|++++. +..+++|+.|++
T Consensus 152 ---------------l~~---l~~L~~L~L~~N~l~~~~~--l--~~l~~L~~L~L~~N~i~~l~~--l~~l~~L~~L~l 207 (291)
T 1h6t_A 152 ---------------LSR---LTKLDTLSLEDNQISDIVP--L--AGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLEL 207 (291)
T ss_dssp ---------------GGG---CTTCSEEECCSSCCCCCGG--G--TTCTTCCEEECCSSCCCBCGG--GTTCTTCSEEEE
T ss_pred ---------------hcc---CCCCCEEEccCCccccchh--h--cCCCccCEEECCCCcCCCChh--hccCCCCCEEEC
Confidence 112 6777777777777777765 4 678889999999998888753 788899999999
Q ss_pred cCCccCCCcc
Q psy3329 475 ANNNLSMTSE 484 (694)
Q Consensus 475 ~~N~l~~~~~ 484 (694)
++|+++....
T Consensus 208 ~~n~i~~~~~ 217 (291)
T 1h6t_A 208 FSQECLNKPI 217 (291)
T ss_dssp EEEEEECCCE
T ss_pred cCCcccCCcc
Confidence 9998887543
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=4e-18 Score=184.57 Aligned_cols=194 Identities=25% Similarity=0.252 Sum_probs=146.6
Q ss_pred CCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEE
Q psy3329 213 TKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLD 292 (694)
Q Consensus 213 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 292 (694)
.+|+.|++++|.++.++.. -+++|+.|++++|.++.++ ..+++|+.|++++|.+.+ +|. +.. +|++|+
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~----l~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~ 126 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDN----LPPQITVLEITQNALISLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLD 126 (571)
T ss_dssp TTCSEEECCSSCCSCCCSC----CCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEE
T ss_pred CCccEEEeCCCCCCccCHh----HcCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEE
Confidence 3899999999999875432 2378999999999999887 347899999999999988 554 554 999999
Q ss_pred CcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCC
Q psy3329 293 MGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNP 372 (694)
Q Consensus 293 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~ 372 (694)
|++|.+++++. .+++|+.|+|++|.+++++. .+++|+.|++++|.++.++. + . ++|+.|++++|.
T Consensus 127 Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l----~-~~L~~L~Ls~N~ 191 (571)
T 3cvr_A 127 VDNNQLTMLPE----LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--L----P-ESLEALDVSTNL 191 (571)
T ss_dssp CCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--C----C-TTCCEEECCSSC
T ss_pred CCCCcCCCCCC----cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--h----h-CCCCEEECcCCC
Confidence 99999999775 68999999999999999775 57899999999999998776 3 2 677777777777
Q ss_pred CcCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccC
Q psy3329 373 LHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSR 452 (694)
Q Consensus 373 l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~ 452 (694)
|+.+|. + ..+| + ...+.|+.|+|++
T Consensus 192 L~~lp~-------------~-----------------------~~~L-----------------~--~~~~~L~~L~Ls~ 216 (571)
T 3cvr_A 192 LESLPA-------------V-----------------------PVRN-----------------H--HSEETEIFFRCRE 216 (571)
T ss_dssp CSSCCC-------------C-----------------------C---------------------------CCEEEECCS
T ss_pred CCchhh-------------H-----------------------HHhh-----------------h--cccccceEEecCC
Confidence 654331 0 0001 0 1223447777777
Q ss_pred CcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhh
Q psy3329 453 CKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQF 489 (694)
Q Consensus 453 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 489 (694)
|.|+.+++.. ..+++|+.|+|++|.+++.+|..+..
T Consensus 217 N~l~~lp~~l-~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 217 NRITHIPENI-LSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp SCCCCCCGGG-GGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred CcceecCHHH-hcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 7777765554 34777778888888777777766643
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=8.8e-19 Score=191.99 Aligned_cols=190 Identities=20% Similarity=0.307 Sum_probs=113.4
Q ss_pred ccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccC
Q psy3329 240 LHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSG 319 (694)
Q Consensus 240 L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 319 (694)
+..+.+..+.+.++.. +..+++|+.|++++|.+.... .+..+++|+.|+|++|.++.+.+ +..+++|+.|+|++
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 4444555555555432 445667777777777765542 35666777777777777776654 66777777777777
Q ss_pred CcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchh
Q psy3329 320 NKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFL 399 (694)
Q Consensus 320 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l 399 (694)
|.+..++ .+..+++|+.|+|++|.++.++. +. .+++|+.|+|++|.++.++.
T Consensus 97 N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l~~--l~---~l~~L~~L~Ls~N~l~~l~~--------------------- 148 (605)
T 1m9s_A 97 NKIKDLS--SLKDLKKLKSLSLEHNGISDING--LV---HLPQLESLYLGNNKITDITV--------------------- 148 (605)
T ss_dssp SCCCCCT--TSTTCTTCCEEECTTSCCCCCGG--GG---GCTTCSEEECCSSCCCCCGG---------------------
T ss_pred CCCCCCh--hhccCCCCCEEEecCCCCCCCcc--cc---CCCccCEEECCCCccCCchh---------------------
Confidence 7776654 36666777777777776666532 22 45666666666666553310
Q ss_pred hhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCcc
Q psy3329 400 VILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNL 479 (694)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l 479 (694)
+.. +++|+.|+|++|.++++++ + ..+++|+.|+|++|.|++++ .+..+++|+.|+|++|++
T Consensus 149 ----------l~~---l~~L~~L~Ls~N~l~~~~~--l--~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 149 ----------LSR---LTKLDTLSLEDNQISDIVP--L--AGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp ----------GGS---CTTCSEEECCSSCCCCCGG--G--TTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEECCSEEE
T ss_pred ----------hcc---cCCCCEEECcCCcCCCchh--h--ccCCCCCEEECcCCCCCCCh--HHccCCCCCEEEccCCcC
Confidence 112 5556666666666655544 3 45566666666666665542 245556666666666665
Q ss_pred CCC
Q psy3329 480 SMT 482 (694)
Q Consensus 480 ~~~ 482 (694)
++.
T Consensus 210 ~~~ 212 (605)
T 1m9s_A 210 LNK 212 (605)
T ss_dssp ECC
T ss_pred cCC
Confidence 543
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=5.2e-18 Score=162.04 Aligned_cols=153 Identities=22% Similarity=0.354 Sum_probs=138.5
Q ss_pred eEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCc
Q psy3329 20 ITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCN 99 (694)
Q Consensus 20 ~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~ 99 (694)
+.++++++.++.+|..+. ++++.|++++|.++.+.+..|..+++|++|+|++|.++.+.+..|.++++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 679999999999996553 789999999999999988899999999999999999999988889999999999999999
Q ss_pred CCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCC
Q psy3329 100 LTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELID 176 (694)
Q Consensus 100 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~ 176 (694)
++.+++..|..+++|+.|++++|.+..+.. ..+..+++|+.|+|++|.++.+++..|..+++|+.|++++|.+..
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRV--DAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCH--HHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 999988889999999999999999986543 678889999999999999999998889999999999999988754
No 112
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.76 E-value=1.8e-18 Score=176.60 Aligned_cols=103 Identities=17% Similarity=0.213 Sum_probs=98.1
Q ss_pred CCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCC-EEEccCCccCCCcchhhhhhcccC
Q psy3329 416 YPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNIT-SLNLANNNLSMTSELSFQFLDVLL 494 (694)
Q Consensus 416 ~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~l~~l~ 494 (694)
+++|+.++|++|.++.++...| .++++|+.|+|++| ++.+.+.+|.+|.+|+ .+++.+ +++.+.+.+| .+|+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF--~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF---~~c~ 297 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTF--AQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAF---MGCD 297 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTT--TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTT---TTCT
T ss_pred cCCCeEEECCCCCcceecHhhh--hCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhh---hCCc
Confidence 7899999999999999999999 99999999999998 9999999999999999 999999 8988889999 8999
Q ss_pred CCcEEECCCCcccccChhhhcCCCcccEEEc
Q psy3329 495 ELESLDLSNNNLTHISPTVLRHNRAITSIKL 525 (694)
Q Consensus 495 ~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l 525 (694)
+|+.+++++|+++.+.+.+|..+++|+.++.
T Consensus 298 ~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 298 NLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred cCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 9999999999999999999999999998874
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=9.3e-18 Score=161.46 Aligned_cols=153 Identities=29% Similarity=0.398 Sum_probs=140.8
Q ss_pred ceEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCC
Q psy3329 19 LITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRC 98 (694)
Q Consensus 19 L~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n 98 (694)
.+.++++++.++.+|..+ .++|++|++++|.++++.+..|..+++|++|+|++|.++.+++..|..+++|++|+|++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 567999999999999644 489999999999999999999999999999999999999999888999999999999999
Q ss_pred cCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCC
Q psy3329 99 NLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELID 176 (694)
Q Consensus 99 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~ 176 (694)
.++.+.+..|..+++|+.|++++|.+.. +|..+..+++|++|++++|.++.+++..|..+++|+.|++++|.+..
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~---lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTE---LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCS---CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred cCCccChhHhCcchhhCeEeccCCcccc---cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 9999988889999999999999999984 45677899999999999999999998889999999999999998764
No 114
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.76 E-value=9.8e-18 Score=154.50 Aligned_cols=125 Identities=31% Similarity=0.549 Sum_probs=117.7
Q ss_pred CCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCC
Q psy3329 416 YPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLE 495 (694)
Q Consensus 416 ~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~ 495 (694)
.++|+.|++++|.++++++..+ ..+++|++|+|++|.|+++++..|.++++|++|++++|++++.++..| ..+++
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~---~~l~~ 101 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVF--DKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVF---DKLTQ 101 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTT--TTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT---TTCTT
T ss_pred CCCCcEEEeCCCcccEeCHHHh--cCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHh---hCCcc
Confidence 5789999999999999998888 889999999999999999999999999999999999999999988877 88999
Q ss_pred CcEEECCCCcccccChhhhcCCCcccEEEccCCccccccC-cHHHHHHHHh
Q psy3329 496 LESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCN-IADMWEWATR 545 (694)
Q Consensus 496 L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~-~~~~~~~~~~ 545 (694)
|+.|++++|+++++++..+..+++|+.+++++|++.|+|+ +.|+..|...
T Consensus 102 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~~~ 152 (177)
T 2o6r_A 102 LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 152 (177)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHH
T ss_pred cCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCccHHHHHHHHhh
Confidence 9999999999999988888999999999999999999998 7889999876
No 115
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.76 E-value=3e-17 Score=172.04 Aligned_cols=312 Identities=18% Similarity=0.230 Sum_probs=154.1
Q ss_pred ccCcccCCCCCceEEECcCCCCcchh-hhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCC
Q psy3329 8 YNDRRNLDNPGLITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDP 86 (694)
Q Consensus 8 ~~~~~~~~~~~L~~L~Ls~~~l~~i~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~ 86 (694)
+++.+|.+|.+|+.+.+.. .++.|. .+|.+|++|+.+++..+ ++.+...+|.++..|+.+.+..+ +..+...+|.+
T Consensus 62 Ig~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~ 138 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKG 138 (394)
T ss_dssp ECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred hHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeec
Confidence 3455666666666666653 355555 56666666666666543 55555666666666666555432 44555555655
Q ss_pred CCCCCEEeCCCCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcE
Q psy3329 87 LTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRN 166 (694)
Q Consensus 87 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~ 166 (694)
+..++..... ....+...+|.++++|+.+.+..+. ..++. ..+.++.+|+.+.+..+ +..+...+|.++..|+.
T Consensus 139 ~~~~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~--~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~ 212 (394)
T 4fs7_A 139 CDFKEITIPE--GVTVIGDEAFATCESLEYVSLPDSM-ETLHN--GLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLEN 212 (394)
T ss_dssp CCCSEEECCT--TCCEECTTTTTTCTTCCEEECCTTC-CEECT--TTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCB
T ss_pred ccccccccCc--cccccchhhhcccCCCcEEecCCcc-ceecc--ccccCCCCceEEEcCCC-ceEeCchhhccccccce
Confidence 5433332222 2333444556666666666665442 22222 34556666666666543 45555556666666666
Q ss_pred EeCCCCCCCCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEcc
Q psy3329 167 LNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLR 246 (694)
Q Consensus 167 L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~ 246 (694)
+.+..+... +....+ ....|+.+.+.... ..+....|..+..|+.+.+..+... ... ..+..+..++.+...
T Consensus 213 i~~~~~~~~-i~~~~~---~~~~l~~i~ip~~~--~~i~~~~f~~~~~l~~~~~~~~~~~-i~~-~~F~~~~~l~~~~~~ 284 (394)
T 4fs7_A 213 MEFPNSLYY-LGDFAL---SKTGVKNIIIPDSF--TELGKSVFYGCTDLESISIQNNKLR-IGG-SLFYNCSGLKKVIYG 284 (394)
T ss_dssp CCCCTTCCE-ECTTTT---TTCCCCEEEECTTC--CEECSSTTTTCSSCCEEEECCTTCE-ECS-CTTTTCTTCCEEEEC
T ss_pred eecCCCceE-eehhhc---ccCCCceEEECCCc--eecccccccccccceeEEcCCCcce-eec-cccccccccceeccC
Confidence 655543221 111111 23445555544321 2223334555555555555443221 111 123444555554444
Q ss_pred CcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcC
Q psy3329 247 NCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLE 326 (694)
Q Consensus 247 ~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 326 (694)
... ++..+|..+.+|+.+.+..+ +......+|.++.+|+.++|.. .++.+...+|.+|.+|+.+.+..+ ++.+.
T Consensus 285 ~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~ 358 (394)
T 4fs7_A 285 SVI---VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIG 358 (394)
T ss_dssp SSE---ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEEC
T ss_pred cee---eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEeh
Confidence 332 22234455555555555433 3333344455555555555542 244555555555555555555443 44455
Q ss_pred chhhcCCCCCCEEeCC
Q psy3329 327 SGLFQNLTHLSVLELN 342 (694)
Q Consensus 327 ~~~l~~l~~L~~L~L~ 342 (694)
..+|.+|++|+.+++.
T Consensus 359 ~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 359 ANAFQGCINLKKVELP 374 (394)
T ss_dssp TTTBTTCTTCCEEEEE
T ss_pred HHHhhCCCCCCEEEEC
Confidence 5555555555555554
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=1.5e-17 Score=158.80 Aligned_cols=154 Identities=21% Similarity=0.303 Sum_probs=137.3
Q ss_pred eEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccCh-hhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCC
Q psy3329 20 ITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINP-QFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRC 98 (694)
Q Consensus 20 ~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n 98 (694)
+.++++++.++.+|..+ .+.+++|++++|.++.+.+ ..|..+++|++|++++|.++.+++..|..+++|++|+|++|
T Consensus 14 ~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 58999999999999654 4567899999999999854 56899999999999999999999988999999999999999
Q ss_pred cCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCCc
Q psy3329 99 NLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDL 177 (694)
Q Consensus 99 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~ 177 (694)
.++++.+..|..+++|++|++++|.+..+. +..+.++++|++|++++|.++.+++..|..+++|+.|++++|.+...
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVG--NDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBC--TTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeEC--HhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 999999999999999999999999998643 36788999999999999999999888899999999999999987643
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=1.2e-17 Score=172.89 Aligned_cols=154 Identities=25% Similarity=0.337 Sum_probs=116.9
Q ss_pred eEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhcc-CCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCC
Q psy3329 20 ITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFT-NLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRC 98 (694)
Q Consensus 20 ~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n 98 (694)
+.++++++.++.+|..+ .+.++.|+|++|.++.+.+..|. .+++|++|+|++|.++.+++..|..+++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 57888888888888544 34588888888888888877777 8888888888888888888878888888888888888
Q ss_pred cCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCcccc---CCCCCCcEEeCCCCCCC
Q psy3329 99 NLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVF---ANNTWLRNLNLAENELI 175 (694)
Q Consensus 99 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~---~~~~~L~~L~l~~n~l~ 175 (694)
.++.+.+..|..+++|+.|+|++|.+..+. +..+.++++|+.|+|++|.++.++...| ..+++|+.|++++|.++
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVD--RNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEEC--HHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 888887778888888888888888887543 2567777888888888888877776655 34555555555555544
Q ss_pred Cc
Q psy3329 176 DL 177 (694)
Q Consensus 176 ~~ 177 (694)
.+
T Consensus 177 ~l 178 (361)
T 2xot_A 177 KL 178 (361)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 118
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=6e-18 Score=185.38 Aligned_cols=198 Identities=22% Similarity=0.336 Sum_probs=166.5
Q ss_pred CCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeC
Q psy3329 262 TCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLEL 341 (694)
Q Consensus 262 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 341 (694)
..+..+.+..+.+.+..+ +..+++|+.|++++|.+..+. .+..+++|+.|+|++|.+.++++ +..+++|+.|+|
T Consensus 21 ~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 94 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred HHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence 346667777777776654 346788999999999999886 58899999999999999999887 889999999999
Q ss_pred CCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCce
Q psy3329 342 NNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEE 421 (694)
Q Consensus 342 ~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~ 421 (694)
++|.++.++ .+. .+++|+.|+|++|.+..++. +.. +++|+.
T Consensus 95 s~N~l~~l~--~l~---~l~~L~~L~Ls~N~l~~l~~-------------------------------l~~---l~~L~~ 135 (605)
T 1m9s_A 95 DENKIKDLS--SLK---DLKKLKSLSLEHNGISDING-------------------------------LVH---LPQLES 135 (605)
T ss_dssp CSSCCCCCT--TST---TCTTCCEEECTTSCCCCCGG-------------------------------GGG---CTTCSE
T ss_pred cCCCCCCCh--hhc---cCCCCCEEEecCCCCCCCcc-------------------------------ccC---CCccCE
Confidence 999999876 233 78999999999999875431 222 899999
Q ss_pred EEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEEC
Q psy3329 422 LRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDL 501 (694)
Q Consensus 422 L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~l 501 (694)
|+|++|.++++ ..+ ..+++|+.|+|++|.|+++++ +..+++|+.|+|++|+|+++. .+ ..+++|+.|+|
T Consensus 136 L~Ls~N~l~~l--~~l--~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~--~l---~~l~~L~~L~L 204 (605)
T 1m9s_A 136 LYLGNNKITDI--TVL--SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR--AL---AGLKNLDVLEL 204 (605)
T ss_dssp EECCSSCCCCC--GGG--GSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG--GG---TTCTTCSEEEC
T ss_pred EECCCCccCCc--hhh--cccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCCh--HH---ccCCCCCEEEc
Confidence 99999999987 345 789999999999999999877 889999999999999999862 34 88999999999
Q ss_pred CCCcccccChhhhc
Q psy3329 502 SNNNLTHISPTVLR 515 (694)
Q Consensus 502 s~N~l~~~~~~~~~ 515 (694)
++|++++.+...+.
T Consensus 205 ~~N~l~~~p~~~~~ 218 (605)
T 1m9s_A 205 FSQECLNKPINHQS 218 (605)
T ss_dssp CSEEEECCCCCCCS
T ss_pred cCCcCcCCcccccc
Confidence 99999886554433
No 119
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.74 E-value=1.1e-16 Score=166.56 Aligned_cols=265 Identities=16% Similarity=0.278 Sum_probs=142.5
Q ss_pred CCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCE
Q psy3329 63 LTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDT 142 (694)
Q Consensus 63 l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~ 142 (694)
+..++.+.+.+ .++.|...+|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .+..++. ..|.+|++|+.
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~--~aF~~c~~L~~ 184 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKE--DIFYYCYNLKK 184 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECS--STTTTCTTCCE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehH--HHhhCcccCCe
Confidence 34555555543 3445555555543 4555555443 555555555553 455555543 3333332 34555555555
Q ss_pred EEccCCCCCCCCccccCCCCCCcEEeCCCCCCCCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCC
Q psy3329 143 LDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSG 222 (694)
Q Consensus 143 L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~ 222 (694)
+++..|.++.++..+|. +.+|+.+.+..+ +..+ +...|..|++|+.+++..
T Consensus 185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I---------------------------~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEI---------------------------GSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp EECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEE---------------------------CTTTTTTCTTCCCEECCT
T ss_pred eecCCCcceEechhhEe-ecccCEEEeCCc-hhee---------------------------hhhHhhCCCCCCEEecCC
Confidence 55555555555555554 345555555422 2221 222334444444444433
Q ss_pred CCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCc-----ccchhhcCCCCCCcEEECcCCC
Q psy3329 223 NPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLI-----DAFTALLSPLESLEHLDMGYSN 297 (694)
Q Consensus 223 n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~-----~~~~~~~~~l~~L~~L~L~~n~ 297 (694)
+ ++.+.... +.. .+|+.+.+ .+.++.+...+|.+|++|+.+.+.+|.+. .....+|.++++|+.+.|. +.
T Consensus 236 ~-l~~I~~~a-F~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~ 310 (401)
T 4fdw_A 236 N-VSTIGQEA-FRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ES 310 (401)
T ss_dssp T-CCEECTTT-TTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TT
T ss_pred C-ccCccccc-ccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-Cc
Confidence 2 22222221 122 34555555 23355555555666666666666555443 3444566667777777776 34
Q ss_pred CcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCC-CCCCeeeCCCCCC
Q psy3329 298 LQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTY-PDLEELRLSGNPL 373 (694)
Q Consensus 298 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~-~~L~~L~Ls~n~l 373 (694)
++.+...+|.+|++|+.+.|..+ ++.+....|.++ +|+.+++.+|.+..+....|. .+ ..++.|.+..+.+
T Consensus 311 i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~---~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 311 IRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWY---GFPDDITVIRVPAESV 382 (401)
T ss_dssp CCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCC---CSCTTCCEEEECGGGH
T ss_pred eEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccccccccc---CCCCCccEEEeCHHHH
Confidence 66677777777777777777543 666666677777 777777777777766666665 44 3566777766553
No 120
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.73 E-value=1.1e-16 Score=167.71 Aligned_cols=259 Identities=19% Similarity=0.227 Sum_probs=122.1
Q ss_pred CCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCcCCccChhhhcCCCCCCEEECCCCcCCccchhh
Q psy3329 52 LSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWT 131 (694)
Q Consensus 52 l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 131 (694)
++.|...+|.++.+|+.+.+.. .++.|...+|.+|++|+.+++.++ ++.+...+|..+.+|+.+.+..+ +..++.
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~-- 133 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGV-- 133 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECT--
T ss_pred EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecc--
Confidence 4445555666666666666653 355555566666666666666533 55555556666666665555433 222222
Q ss_pred hhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhc
Q psy3329 132 LVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVN 211 (694)
Q Consensus 132 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 211 (694)
..|.++..++.... ..+..+...+|.++++|+.+.+..+. ..+....|. .+.+|+.+.+..+ + ..+....|..
T Consensus 134 ~aF~~~~~~~~~~~--~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~--~c~~L~~i~l~~~-~-~~I~~~~F~~ 206 (394)
T 4fs7_A 134 EAFKGCDFKEITIP--EGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFS--GCGKLKSIKLPRN-L-KIIRDYCFAE 206 (394)
T ss_dssp TTTTTCCCSEEECC--TTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTT--TCTTCCBCCCCTT-C-CEECTTTTTT
T ss_pred eeeecccccccccC--ccccccchhhhcccCCCcEEecCCcc-ceecccccc--CCCCceEEEcCCC-c-eEeCchhhcc
Confidence 23344432222211 12233444556666666666665432 222222222 3445555555443 1 3334445666
Q ss_pred CCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEE
Q psy3329 212 ATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHL 291 (694)
Q Consensus 212 ~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 291 (694)
+..|+.+.+..+...... ......+|+.+.+... ++.+...+|..+..|+.+.+..+
T Consensus 207 ~~~L~~i~~~~~~~~i~~---~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~------------------- 263 (394)
T 4fs7_A 207 CILLENMEFPNSLYYLGD---FALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNN------------------- 263 (394)
T ss_dssp CTTCCBCCCCTTCCEECT---TTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCT-------------------
T ss_pred ccccceeecCCCceEeeh---hhcccCCCceEEECCC-ceecccccccccccceeEEcCCC-------------------
Confidence 666666655543221111 1122344555554322 33333344444555555444433
Q ss_pred ECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccc
Q psy3329 292 DMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFH 355 (694)
Q Consensus 292 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 355 (694)
...+....|..+..++.+.+..+. ++...|..+.+|+.+.+.++ ++.++...|.
T Consensus 264 ------~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~ 317 (394)
T 4fs7_A 264 ------KLRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFE 317 (394)
T ss_dssp ------TCEECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-CCEECTTTTT
T ss_pred ------cceeeccccccccccceeccCcee---eccccccccccccccccccc-cceechhhhc
Confidence 223333445555555555554433 22334555666666666543 4445554444
No 121
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=1.8e-17 Score=155.49 Aligned_cols=152 Identities=16% Similarity=0.205 Sum_probs=91.0
Q ss_pred CCCCCceEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEE
Q psy3329 14 LDNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYL 93 (694)
Q Consensus 14 ~~~~~L~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L 93 (694)
.++++|+.|++++|.++.+| .+..+++|++|++++|.+..+ ..+..+++|++|++++|.++...+..|..+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 44556666666666666666 456666666666666655443 245666666666666666665444456666666666
Q ss_pred eCCCCcCCccChhhhcCCCCCCEEECCCCc-CCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCC
Q psy3329 94 MLNRCNLTYISPSAFDNLNHLKTLELSQNK-LKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAEN 172 (694)
Q Consensus 94 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n 172 (694)
++++|.+++..+..+..+++|+.|++++|. +..+ + .+..+++|++|++++|.++.++ .+..+++|++|++++|
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~---~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI---M-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC---G-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc---H-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCc
Confidence 666666666555666666666666666665 4432 1 3555666666666666666544 3455555555555555
Q ss_pred CC
Q psy3329 173 EL 174 (694)
Q Consensus 173 ~l 174 (694)
.+
T Consensus 192 ~i 193 (197)
T 4ezg_A 192 TI 193 (197)
T ss_dssp --
T ss_pred cc
Confidence 54
No 122
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=5.2e-18 Score=166.82 Aligned_cols=62 Identities=31% Similarity=0.439 Sum_probs=29.7
Q ss_pred CCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCccc
Q psy3329 284 PLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRL 349 (694)
Q Consensus 284 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 349 (694)
.+++|++|++++|.++.+. .+..+++|+.|+|++|.++++++ +..+++|+.|++++|+++++
T Consensus 39 ~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l 100 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNL 100 (263)
T ss_dssp HHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCC
T ss_pred hcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCc
Confidence 3344444444444444433 34444555555555555554443 44455555555555554443
No 123
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.72 E-value=3.7e-16 Score=162.68 Aligned_cols=157 Identities=20% Similarity=0.366 Sum_probs=87.7
Q ss_pred CChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcC
Q psy3329 204 LSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLS 283 (694)
Q Consensus 204 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~ 283 (694)
++...|.++ +|+.+.+..+ ++.+.... +.. .+|+.+.+.. .++.+...+|.+|++|+.+++..|.+......+|.
T Consensus 127 I~~~aF~~~-~L~~i~l~~~-i~~I~~~a-F~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~ 201 (401)
T 4fdw_A 127 IPKDAFRNS-QIAKVVLNEG-LKSIGDMA-FFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV 201 (401)
T ss_dssp ECTTTTTTC-CCSEEECCTT-CCEECTTT-TTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT
T ss_pred ehHhhcccC-CccEEEeCCC-ccEECHHh-cCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe
Confidence 344445554 5666666544 44433332 233 2466666654 55556556666666666666666666555555555
Q ss_pred CCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCC
Q psy3329 284 PLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDL 363 (694)
Q Consensus 284 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L 363 (694)
+.+|+.+.|.. .+..+...+|.+|++|+.+++..+ ++.+....|.+ .+|+.+.+ .+.++.++...|. .+++|
T Consensus 202 -~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~---~c~~L 273 (401)
T 4fdw_A 202 -YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFY---YCPEL 273 (401)
T ss_dssp -TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTT---TCTTC
T ss_pred -ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhh---CCCCC
Confidence 35666666653 355666666666666666666653 45555555555 55666666 3345555555555 55555
Q ss_pred CeeeCCCCCC
Q psy3329 364 EELRLSGNPL 373 (694)
Q Consensus 364 ~~L~Ls~n~l 373 (694)
+.+++.+|.+
T Consensus 274 ~~l~l~~~~~ 283 (401)
T 4fdw_A 274 AEVTTYGSTF 283 (401)
T ss_dssp CEEEEESSCC
T ss_pred CEEEeCCccc
Confidence 5555555443
No 124
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.71 E-value=8e-17 Score=146.85 Aligned_cols=120 Identities=32% Similarity=0.547 Sum_probs=111.5
Q ss_pred CCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCc
Q psy3329 418 DLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELE 497 (694)
Q Consensus 418 ~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~ 497 (694)
..+.+++++|.++.++... .++|+.|+|++|.|+++++..|.++++|++|+|++|+|+++.+..| ..+++|+
T Consensus 10 ~~~~l~~s~n~l~~ip~~~-----~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f---~~l~~L~ 81 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI-----PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVF---DKLTQLT 81 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC-----CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTT---TTCTTCC
T ss_pred CCCEEEeCCCCcCccCccC-----CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhc---cCCCCCC
Confidence 3578999999999987543 3789999999999999999999999999999999999999999888 8899999
Q ss_pred EEECCCCcccccChhhhcCCCcccEEEccCCccccccC-cHHHHHHHHh
Q psy3329 498 SLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCN-IADMWEWATR 545 (694)
Q Consensus 498 ~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~-~~~~~~~~~~ 545 (694)
+|+|++|+|+++++..+..+++|+.|++++|+|.|+|+ +.|+..|+..
T Consensus 82 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~ 130 (170)
T 3g39_A 82 QLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQ 130 (170)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGGGHHHHHHHHH
T ss_pred EEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCchhHHHHHHHHHh
Confidence 99999999999999889999999999999999999996 9999999987
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=1.6e-19 Score=196.67 Aligned_cols=101 Identities=25% Similarity=0.239 Sum_probs=58.2
Q ss_pred CCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCc-chhhhhhcccC
Q psy3329 416 YPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTS-ELSFQFLDVLL 494 (694)
Q Consensus 416 ~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~l~ 494 (694)
+++|+.|+|++|.++.++ ..+ +.+++|+.|+|++|.|++++ .++++++|+.|+|++|+|++.+ |..+ ..++
T Consensus 462 l~~L~~L~Ls~N~l~~lp-~~~--~~l~~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l---~~l~ 533 (567)
T 1dce_A 462 LLLVTHLDLSHNRLRALP-PAL--AALRCLEVLQASDNALENVD--GVANLPRLQELLLCNNRLQQSAAIQPL---VSCP 533 (567)
T ss_dssp GTTCCEEECCSSCCCCCC-GGG--GGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCSSCCCSSSTTGGG---GGCT
T ss_pred cccCcEeecCcccccccc-hhh--hcCCCCCEEECCCCCCCCCc--ccCCCCCCcEEECCCCCCCCCCCcHHH---hcCC
Confidence 445555555555555332 233 55666666666666666643 4566666666666666666665 5555 5666
Q ss_pred CCcEEECCCCcccccChh---hhcCCCcccEEE
Q psy3329 495 ELESLDLSNNNLTHISPT---VLRHNRAITSIK 524 (694)
Q Consensus 495 ~L~~L~ls~N~l~~~~~~---~~~~~~~l~~l~ 524 (694)
+|+.|+|++|++++.+|. .+..+++|+.|+
T Consensus 534 ~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 534 RLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp TCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 666666666666665442 223356666554
No 126
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.67 E-value=4e-16 Score=142.66 Aligned_cols=119 Identities=29% Similarity=0.503 Sum_probs=110.0
Q ss_pred CceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcE
Q psy3329 419 LEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELES 498 (694)
Q Consensus 419 L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~ 498 (694)
-+.+++++|.++.++... .++|+.|+|++|.|+++++..|.++++|+.|+|++|+|+++++..| ..+++|+.
T Consensus 14 ~~~l~~~~n~l~~iP~~~-----~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~---~~l~~L~~ 85 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGI-----PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVF---DKLTQLTQ 85 (174)
T ss_dssp SSEEECCSSCCSSCCSCC-----CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT---TTCTTCCE
T ss_pred CcEEEeCCCCCCccCCCc-----CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHh---CCcchhhE
Confidence 478999999998887643 3789999999999999999999999999999999999999988877 88999999
Q ss_pred EECCCCcccccChhhhcCCCcccEEEccCCccccccC-cHHHHHHHHh
Q psy3329 499 LDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCN-IADMWEWATR 545 (694)
Q Consensus 499 L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~-~~~~~~~~~~ 545 (694)
|+|++|+|+++++..+..+++|+.+++++|+|.|+|. +.|+..|+..
T Consensus 86 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~~~~~~ 133 (174)
T 2r9u_A 86 LDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWVAD 133 (174)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGHHHHHHHHH
T ss_pred EECCCCccceeCHHHhccccCCCEEEeCCCCcccccccHHHHHHHHHh
Confidence 9999999999988889999999999999999999996 8999999876
No 127
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=3.3e-16 Score=146.86 Aligned_cols=152 Identities=16% Similarity=0.215 Sum_probs=83.1
Q ss_pred cCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcE
Q psy3329 211 NATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEH 290 (694)
Q Consensus 211 ~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 290 (694)
.+++|+.|++++|.++..+ .+..+++|++|++++|.++.++ .+..+++|+.|++++|.+.+..+..+..+++|++
T Consensus 42 ~l~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT---GIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT---TGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hcCCccEEeccCCCccChH---HHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 3445555555555554332 2344555555555555544442 3455556666666666655555555555666666
Q ss_pred EECcCCCCcccChhhhcCCCCCcEEeccCCc-ccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCC
Q psy3329 291 LDMGYSNLQRISRSTFLKMTSLKTLILSGNK-LETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLS 369 (694)
Q Consensus 291 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls 369 (694)
|++++|.++...+..+..+++|++|++++|. ++.++ .+..+++|+.|++++|.++.++ .+. .+++|+.|+++
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~---~l~~L~~L~l~ 189 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR--GIE---DFPKLNQLYAF 189 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT--TGG---GCSSCCEEEEC
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH--Hhc---cCCCCCEEEee
Confidence 6666666655555555666666666666665 55443 2555666666666666666544 222 45666666666
Q ss_pred CCCCc
Q psy3329 370 GNPLH 374 (694)
Q Consensus 370 ~n~l~ 374 (694)
+|++.
T Consensus 190 ~N~i~ 194 (197)
T 4ezg_A 190 SQTIG 194 (197)
T ss_dssp BC---
T ss_pred CcccC
Confidence 66654
No 128
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=3.4e-16 Score=153.77 Aligned_cols=169 Identities=21% Similarity=0.275 Sum_probs=131.9
Q ss_pred CCCCceEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEe
Q psy3329 15 DNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLM 94 (694)
Q Consensus 15 ~~~~L~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~ 94 (694)
++.++..++++.+.++.++ .+..+++|++|++++|.++.+. .+..+++|++|++++|.++.+++ +..+++|++|+
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 3556777778888888877 5777888888888888888764 57888888888888888888766 78888888888
Q ss_pred CCCCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCC
Q psy3329 95 LNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENEL 174 (694)
Q Consensus 95 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l 174 (694)
+++|.++++.+ +.. ++|+.|++++|.++.+. .+..+++|+.|++++|.+++++ .+..+++|+.|++++|.+
T Consensus 92 L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~~----~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i 162 (263)
T 1xeu_A 92 VNRNRLKNLNG--IPS-ACLSRLFLDNNELRDTD----SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEI 162 (263)
T ss_dssp CCSSCCSCCTT--CCC-SSCCEEECCSSCCSBSG----GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCC
T ss_pred CCCCccCCcCc--ccc-CcccEEEccCCccCCCh----hhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcC
Confidence 88888888643 333 78888888888887542 4778888888888888888774 477888888888888888
Q ss_pred CCcchhhhcccCCCcccEEeCCCCCCC
Q psy3329 175 IDLDVATTLGQNLVHLDSLDLSNCHLK 201 (694)
Q Consensus 175 ~~~~~~~~~~~~~~~L~~L~l~~n~~~ 201 (694)
.+.. .+ ..+++|+.|++++|.+.
T Consensus 163 ~~~~---~l-~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 163 TNTG---GL-TRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp CBCT---TS-TTCCCCCEEEEEEEEEE
T ss_pred cchH---Hh-ccCCCCCEEeCCCCccc
Confidence 7762 22 26788888888888874
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.66 E-value=6.6e-19 Score=191.90 Aligned_cols=125 Identities=25% Similarity=0.293 Sum_probs=82.8
Q ss_pred CCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhhhhhcccccccCC
Q psy3329 335 HLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENY 414 (694)
Q Consensus 335 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~ 414 (694)
.|+.|++++|.+++++. +. .+++|+.|++++|.++.+|. . +..
T Consensus 442 ~L~~L~Ls~n~l~~lp~--~~---~l~~L~~L~Ls~N~l~~lp~------------~------------------~~~-- 484 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH--LE---QLLLVTHLDLSHNRLRALPP------------A------------------LAA-- 484 (567)
T ss_dssp TCSEEECTTSCCSSCCC--GG---GGTTCCEEECCSSCCCCCCG------------G------------------GGG--
T ss_pred CceEEEecCCCCCCCcC--cc---ccccCcEeecCcccccccch------------h------------------hhc--
Confidence 46777777777777654 43 56777777777777764432 1 122
Q ss_pred CCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccC-CCCCCCCCCCCEEEccCCccCCCcchhhhhhccc
Q psy3329 415 TYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLP-PNVFNNTRNITSLNLANNNLSMTSELSFQFLDVL 493 (694)
Q Consensus 415 ~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l 493 (694)
+++|+.|+|++|.+++++ .+ ..+++|+.|+|++|.|++++ |..+..+++|+.|+|++|.+++.++........+
T Consensus 485 -l~~L~~L~Ls~N~l~~lp--~l--~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~l 559 (567)
T 1dce_A 485 -LRCLEVLQASDNALENVD--GV--ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 559 (567)
T ss_dssp -CTTCCEEECCSSCCCCCG--GG--TTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHC
T ss_pred -CCCCCEEECCCCCCCCCc--cc--CCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHC
Confidence 677777777777777754 44 66777777777777777775 6667777777777777777777665433333456
Q ss_pred CCCcEEEC
Q psy3329 494 LELESLDL 501 (694)
Q Consensus 494 ~~L~~L~l 501 (694)
++|+.||+
T Consensus 560 p~L~~L~l 567 (567)
T 1dce_A 560 PSVSSILT 567 (567)
T ss_dssp TTCSEEEC
T ss_pred cccCccCC
Confidence 77777754
No 130
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.64 E-value=3.1e-16 Score=161.52 Aligned_cols=119 Identities=22% Similarity=0.373 Sum_probs=110.4
Q ss_pred ceEEcCCC-CCcccCCCCCCCcCCCCccEEEccC-CcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCc
Q psy3329 420 EELRLSGN-PLHVLPTGNLLPPQLSRLRSLDLSR-CKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELE 497 (694)
Q Consensus 420 ~~L~Ls~n-~l~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~ 497 (694)
..++++++ .++.++. + ..+++|+.|+|++ |.|+++++..|.++++|+.|+|++|+|++++|..| ..+++|+
T Consensus 11 ~~v~~~~~n~l~~ip~--l--~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~---~~l~~L~ 83 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH--L--PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF---HFTPRLS 83 (347)
T ss_dssp SCEECCSSCCCTTTTT--S--CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGG---GSCSCCC
T ss_pred CEEEcCCCCCCCccCC--C--CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHh---cCCcCCC
Confidence 45789998 8999877 6 7899999999996 99999999999999999999999999999999988 8999999
Q ss_pred EEECCCCcccccChhhhcCCCcccEEEccCCccccccCcHHHHHHHHhc
Q psy3329 498 SLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEWATRE 546 (694)
Q Consensus 498 ~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~~~~~~~~~~~~ 546 (694)
.|+|++|+|+++++..+..++ |+.|++.+|+|.|+|++.|+..|.+..
T Consensus 84 ~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~~~ 131 (347)
T 2ifg_A 84 RLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEEEG 131 (347)
T ss_dssp EEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHHTT
T ss_pred EEeCCCCccceeCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHHHhC
Confidence 999999999999988888776 999999999999999999999998763
No 131
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.63 E-value=3.6e-14 Score=148.56 Aligned_cols=332 Identities=14% Similarity=0.216 Sum_probs=181.9
Q ss_pred ccCcccCCCC-CceEEECcCCCCcchh-hhhhcCCCCcEEEccCC---cCCccChhhccCCCCCCeEECCCCCCCccCCC
Q psy3329 8 YNDRRNLDNP-GLITINLNANPIQPVE-GAFLVARSLLYLYMQEC---TLSKINPQFFTNLTTLNKLDLSGNPLRIIEPG 82 (694)
Q Consensus 8 ~~~~~~~~~~-~L~~L~Ls~~~l~~i~-~~~~~~~~L~~L~l~~n---~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~ 82 (694)
+.+.+|.+++ .|+.+.+.. .++.|. .+|.+|.+|+.+.+..+ .++.+...+|..+.+|+.+.+..+ ++.+...
T Consensus 54 Ig~~aF~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~ 131 (394)
T 4gt6_A 54 IGDRVFCNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSE 131 (394)
T ss_dssp ECTTTTTTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTT
T ss_pred cCHhhccCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhh
Confidence 3456677664 477777754 366665 66777777777777654 355666667777777777666543 5566666
Q ss_pred CCCCCCCCCEEeCCCCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCC
Q psy3329 83 VFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNT 162 (694)
Q Consensus 83 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~ 162 (694)
+|..+.+|+.+.+.. .+..+...+|..+.+|+.+.+..+ +..++. ..+. ...|+.+.+..+ +..+...+|..+.
T Consensus 132 aF~~c~~L~~i~lp~-~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~--~aF~-~~~l~~i~ip~~-~~~i~~~af~~c~ 205 (394)
T 4gt6_A 132 AFHHCEELDTVTIPE-GVTSVADGMFSYCYSLHTVTLPDS-VTAIEE--RAFT-GTALTQIHIPAK-VTRIGTNAFSECF 205 (394)
T ss_dssp TTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECT--TTTT-TCCCSEEEECTT-CCEECTTTTTTCT
T ss_pred hhhhhcccccccccc-eeeeecccceecccccccccccce-eeEecc--cccc-ccceeEEEECCc-ccccccchhhhcc
Confidence 677777777777753 355555666777777777777544 333332 2232 345666666543 3344455566666
Q ss_pred CCcEEeCCCCCCCCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccE
Q psy3329 163 WLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHR 242 (694)
Q Consensus 163 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~ 242 (694)
.++............+...+.......... ..+.....+..+.+... +..+.. ..+..+..|+.
T Consensus 206 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~ip~~-v~~i~~-~aF~~c~~L~~ 269 (394)
T 4gt6_A 206 ALSTITSDSESYPAIDNVLYEKSANGDYAL--------------IRYPSQREDPAFKIPNG-VARIET-HAFDSCAYLAS 269 (394)
T ss_dssp TCCEEEECCSSSCBSSSCEEEECTTSCEEE--------------EECCTTCCCSEEECCTT-EEEECT-TTTTTCSSCCE
T ss_pred ccceecccccccccccceeecccccccccc--------------cccccccccceEEcCCc-ceEccc-ceeeecccccE
Confidence 666666554433322111110000000000 00111222333333221 111111 13456666666
Q ss_pred EEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcc
Q psy3329 243 LSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKL 322 (694)
Q Consensus 243 L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 322 (694)
+.+..+ +..+...+|.++++|+.+.+. +.+......+|.++.+|+.+.|.. .++.+...+|.+|.+|+.+.|..+ +
T Consensus 270 i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~C~~L~~i~ip~s-v 345 (394)
T 4gt6_A 270 VKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPE-GITQILDDAFAGCEQLERIAIPSS-V 345 (394)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEEECTT-C
T ss_pred Eecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCC-cccEehHhHhhCCCCCCEEEECcc-c
Confidence 666543 334555667777777777775 335555556677777777777764 366777777778888888877643 6
Q ss_pred cCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCC
Q psy3329 323 ETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPL 373 (694)
Q Consensus 323 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l 373 (694)
+.+...+|.+|++|+.+++.++.... ..|. .+.+|+.+.+..+.+
T Consensus 346 ~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~---~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 346 TKIPESAFSNCTALNNIEYSGSRSQW---NAIS---TDSGLQNLPVAPGSI 390 (394)
T ss_dssp CBCCGGGGTTCTTCCEEEESSCHHHH---HTCB---CCCCC----------
T ss_pred CEEhHhHhhCCCCCCEEEECCceeeh---hhhh---ccCCCCEEEeCCCCE
Confidence 67777777888888888777664221 1222 566777777766543
No 132
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.63 E-value=2.4e-14 Score=149.94 Aligned_cols=301 Identities=17% Similarity=0.285 Sum_probs=167.9
Q ss_pred CccChhhccCCC-CCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCC---cCCccChhhhcCCCCCCEEECCCCcCCccc
Q psy3329 53 SKINPQFFTNLT-TLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRC---NLTYISPSAFDNLNHLKTLELSQNKLKSHI 128 (694)
Q Consensus 53 ~~~~~~~~~~l~-~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n---~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 128 (694)
+.|...+|.++. .|+.+.+..+ ++.|...+|.+|.+|+.+.+..+ .++.+...+|..+.+|+.+.+..+ ++.++
T Consensus 52 t~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~ 129 (394)
T 4gt6_A 52 SKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEID 129 (394)
T ss_dssp EEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEEC
T ss_pred eEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceeh
Confidence 344445555543 3555555432 55555555555555555555543 244454555555555555555433 22222
Q ss_pred hhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCCcchhhhcccCCCcccEEeCCCCCCCCCCChhh
Q psy3329 129 DWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDA 208 (694)
Q Consensus 129 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 208 (694)
. ..+.++.+|+.+.+.. .+..+...+|..+..|+.+.+..+ +..+....|. ...|+.+.+..+. ..+....
T Consensus 130 ~--~aF~~c~~L~~i~lp~-~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~---~~~l~~i~ip~~~--~~i~~~a 200 (394)
T 4gt6_A 130 S--EAFHHCEELDTVTIPE-GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT---GTALTQIHIPAKV--TRIGTNA 200 (394)
T ss_dssp T--TTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT---TCCCSEEEECTTC--CEECTTT
T ss_pred h--hhhhhhcccccccccc-eeeeecccceecccccccccccce-eeEecccccc---ccceeEEEECCcc--cccccch
Confidence 2 3345555666665542 334455555666666666665543 3333333332 2345555554432 2233345
Q ss_pred hhcCCCCcEEEcCCCCCCccchhh------------hccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcc
Q psy3329 209 FVNATKLRTLYLSGNPLSAADLSV------------ALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLID 276 (694)
Q Consensus 209 ~~~~~~L~~L~L~~n~l~~~~~~~------------~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~ 276 (694)
|..+.+++................ .......+..+.+. +.++.+...+|..+..|+.+.+..+. ..
T Consensus 201 f~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~-~~ 278 (394)
T 4gt6_A 201 FSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSV-VS 278 (394)
T ss_dssp TTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTC-CE
T ss_pred hhhccccceecccccccccccceeecccccccccccccccccccceEEcC-CcceEcccceeeecccccEEeccccc-ce
Confidence 666666666665544332211100 00112233344432 23445555677778888888776543 34
Q ss_pred cchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCcccccc
Q psy3329 277 AFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHE 356 (694)
Q Consensus 277 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 356 (694)
....+|.++++|+.+.+. +.++.+...+|.+|.+|+.+.|..+ ++.+....|.+|.+|+.+.+..+ ++.++..+|.
T Consensus 279 I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~- 354 (394)
T 4gt6_A 279 IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFS- 354 (394)
T ss_dssp ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGT-
T ss_pred ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhh-
Confidence 445567777788888775 4566777777888888888887653 66677777777888888877643 6777777776
Q ss_pred CCCCCCCCeeeCCCCC
Q psy3329 357 NYTYPDLEELRLSGNP 372 (694)
Q Consensus 357 ~~~~~~L~~L~Ls~n~ 372 (694)
+|.+|+.+++.++.
T Consensus 355 --~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 355 --NCTALNNIEYSGSR 368 (394)
T ss_dssp --TCTTCCEEEESSCH
T ss_pred --CCCCCCEEEECCce
Confidence 67777777776653
No 133
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.59 E-value=2.3e-15 Score=137.19 Aligned_cols=136 Identities=24% Similarity=0.210 Sum_probs=78.9
Q ss_pred CCCCcEEEccCCcCC-ccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCcCCccChhhhcCCCCCCEE
Q psy3329 39 ARSLLYLYMQECTLS-KINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTL 117 (694)
Q Consensus 39 ~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 117 (694)
.++|++|++++|.+. +..|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.+++..|..+.++++|+.|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 355666666666655 22244455566666666666666555 335566666666666666666445555556666666
Q ss_pred ECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCc---cccCCCCCCcEEeCCCCCCCCc
Q psy3329 118 ELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPD---NVFANNTWLRNLNLAENELIDL 177 (694)
Q Consensus 118 ~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~---~~~~~~~~L~~L~l~~n~l~~~ 177 (694)
++++|.++.+.. +..+..+++|++|++++|.++.+++ ..+..+++|++|++++|.+...
T Consensus 101 ~Ls~N~l~~~~~-~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 101 NLSGNKLKDIST-LEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp ECBSSSCCSSGG-GGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred eccCCccCcchh-HHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 666666654321 1345566666666666666666555 4556666666666666655443
No 134
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.59 E-value=6.3e-15 Score=137.33 Aligned_cols=128 Identities=25% Similarity=0.368 Sum_probs=85.8
Q ss_pred eEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChh-hccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCC
Q psy3329 20 ITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQ-FFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRC 98 (694)
Q Consensus 20 ~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n 98 (694)
++++++++.++.+|..+. .++++|++++|.++.+.+. .|..+++|++|+|++|.++++.+..|..+++|++|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 577778777777775442 3677777777777777654 4677777777777777777776666777777777777777
Q ss_pred cCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCC
Q psy3329 99 NLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGIS 151 (694)
Q Consensus 99 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~ 151 (694)
.++++.+..|..+++|+.|++++|+++.. .+..+..+++|++|++++|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCV--MPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEE--CTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCee--CHHHhhcCCCCCEEEeCCCCcc
Confidence 77777666666667777777766666632 2244555555555555555544
No 135
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.57 E-value=1.9e-14 Score=133.94 Aligned_cols=127 Identities=21% Similarity=0.353 Sum_probs=88.8
Q ss_pred eEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCc
Q psy3329 20 ITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCN 99 (694)
Q Consensus 20 ~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~ 99 (694)
+.++++++.++.+|..+ .++|++|++++|.++.+. ..|..+++|++|++++|.++.+++..|.++++|++|+|++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 56788888888887543 357888888888777663 677778888888888888877777777777788888888777
Q ss_pred CCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCC
Q psy3329 100 LTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGIS 151 (694)
Q Consensus 100 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~ 151 (694)
++++.+.+|..+++|+.|++++|.++.+.. ..+..+++|+.|++++|.+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPE--GAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCT--TTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeCh--hhhhcCccccEEEeCCCCee
Confidence 777777777777777777777776664332 23445555555555555543
No 136
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.56 E-value=7.7e-15 Score=133.72 Aligned_cols=113 Identities=28% Similarity=0.356 Sum_probs=48.9
Q ss_pred cCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCc-hhhcCCCCCC
Q psy3329 259 HRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLES-GLFQNLTHLS 337 (694)
Q Consensus 259 ~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~ 337 (694)
..+++|+.|++++|.+.+. ..+..+++|++|++++|.++...+..+..+++|+.|++++|.+++++. ..+..+++|+
T Consensus 46 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~ 123 (168)
T 2ell_A 46 AEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLK 123 (168)
T ss_dssp GGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCC
T ss_pred HhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCC
Confidence 3344444444444443333 333444444444444444444333333344444444444444444322 3344444444
Q ss_pred EEeCCCCCCcccCc---cccccCCCCCCCCeeeCCCCCCcCC
Q psy3329 338 VLELNNCGLTRLNE---TVFHENYTYPDLEELRLSGNPLHVL 376 (694)
Q Consensus 338 ~L~L~~n~l~~~~~---~~~~~~~~~~~L~~L~Ls~n~l~~~ 376 (694)
.|++++|.++.++. ..+. .+++|+.|++++|.+..+
T Consensus 124 ~L~l~~N~l~~~~~~~~~~~~---~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 124 SLDLFNCEVTNLNDYRESVFK---LLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp EEECCSSGGGTSTTHHHHHHT---TCSSCCEETTEETTSCBC
T ss_pred EEEeeCCcCcchHHHHHHHHH---hCccCcEecCCCCChhhc
Confidence 44444444444443 2232 344555555555444433
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.56 E-value=3.6e-14 Score=130.49 Aligned_cols=127 Identities=31% Similarity=0.422 Sum_probs=69.6
Q ss_pred eEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCc
Q psy3329 20 ITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCN 99 (694)
Q Consensus 20 ~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~ 99 (694)
+.++++++.++.+|..+ .++|++|++++|.++++.+..|..+++|++|++++|.++.+++..|..+++|++|++++|.
T Consensus 10 ~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 55666666666666322 2456666666666666555555666666666666666665555555556666666666666
Q ss_pred CCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCC
Q psy3329 100 LTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGI 150 (694)
Q Consensus 100 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i 150 (694)
++++++..+..+++|+.|++++|.++.+.. ..+..+++|++|++++|.+
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~--~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPD--GIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEECCSSCB
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCH--HHhcCCcccCEEEecCCCe
Confidence 655555555555555555555555443221 2233344444444444443
No 138
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.56 E-value=7.7e-16 Score=173.17 Aligned_cols=90 Identities=27% Similarity=0.300 Sum_probs=40.4
Q ss_pred hhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCC
Q psy3329 279 TALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENY 358 (694)
Q Consensus 279 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 358 (694)
+..+..++.|+.|+|++|.+..++...+ .+++|+.|+|++|.++.++ ..|..+++|+.|+|++|.|+.++... .
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~Ls~N~l~~lp~~~-~--- 290 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSLTELP-AEIKNLSNLRVLDLSHNRLTSLPAEL-G--- 290 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCCSCCC-GGGGGGTTCCEEECTTSCCSSCCSSG-G---
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcCcccC-hhhhCCCCCCEEeCcCCcCCccChhh-c---
Confidence 3444455555555555555554443322 4555555555555555333 23445555555555555555443322 2
Q ss_pred CCCCCCeeeCCCCCCc
Q psy3329 359 TYPDLEELRLSGNPLH 374 (694)
Q Consensus 359 ~~~~L~~L~Ls~n~l~ 374 (694)
.+++|+.|+|++|.++
T Consensus 291 ~l~~L~~L~L~~N~l~ 306 (727)
T 4b8c_D 291 SCFQLKYFYFFDNMVT 306 (727)
T ss_dssp GGTTCSEEECCSSCCC
T ss_pred CCCCCCEEECCCCCCC
Confidence 3444444444444443
No 139
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.55 E-value=1.4e-14 Score=129.02 Aligned_cols=129 Identities=23% Similarity=0.177 Sum_probs=94.3
Q ss_pred CCCCcEEEccCCcCC-ccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCcCCccChhhhcCCCCCCEE
Q psy3329 39 ARSLLYLYMQECTLS-KINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTL 117 (694)
Q Consensus 39 ~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 117 (694)
.++|+.|++++|.+. +..|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.+++..|..+..+++|+.|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 466788888888777 34456677788888888888887776 447778888888888888887667777778888888
Q ss_pred ECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCc---cccCCCCCCcEEeCC
Q psy3329 118 ELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPD---NVFANNTWLRNLNLA 170 (694)
Q Consensus 118 ~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~---~~~~~~~~L~~L~l~ 170 (694)
++++|.++... .+..+..+++|++|++++|.++.+++ ..+..+++|+.|+++
T Consensus 94 ~ls~N~i~~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLS-TIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHH-HHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChH-HHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 88888776432 22557777888888888887777765 456667777777654
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=1.6e-14 Score=132.72 Aligned_cols=137 Identities=17% Similarity=0.209 Sum_probs=70.2
Q ss_pred cccCCCCCceEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCC
Q psy3329 11 RRNLDNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSL 90 (694)
Q Consensus 11 ~~~~~~~~L~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L 90 (694)
..|.++++|+.|++++|.++.++......++|++|++++|.++++ ..+..+++|++|++++|.++.+++..|..+++|
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred HhcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 345556666666666666665543222233566666666655554 345555555555555555555544444555555
Q ss_pred CEEeCCCCcCCccCh-hhhcCCCCCCEEECCCCcCCccchh-hhhhcCCCCCCEEEccCCC
Q psy3329 91 EYLMLNRCNLTYISP-SAFDNLNHLKTLELSQNKLKSHIDW-TLVLGNLGKLDTLDLRQSG 149 (694)
Q Consensus 91 ~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~~l~~L~~L~L~~n~ 149 (694)
++|++++|.++.+++ ..+..+++|+.|++++|.+...... ...+..+++|+.|++++|.
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 555555555554422 2445555555555555555432211 0124444555555544443
No 141
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.52 E-value=4.4e-15 Score=167.05 Aligned_cols=213 Identities=18% Similarity=0.192 Sum_probs=80.6
Q ss_pred CCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcc---------cChhhhcCCCCCcEEeccCCcccCcCchhhcC
Q psy3329 262 TCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQR---------ISRSTFLKMTSLKTLILSGNKLETLESGLFQN 332 (694)
Q Consensus 262 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~---------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 332 (694)
+.++.|+|.+|.+...... .++.++|+.|.|.. +.+..|..+++|+.|+|++|.+..++...+ .
T Consensus 173 ~~~~~l~L~~n~~~~~~~~------~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~ 245 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQA------LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIF-K 245 (727)
T ss_dssp -------------------------------------------------------CCCCCCEEECTTSCCSCCCGGGG-G
T ss_pred CccceEEeeCCCCCcchhh------HhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhc-C
Confidence 4577788877776653221 23334444443332 334556666667777777776666555433 5
Q ss_pred CCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhhhhhccccccc
Q psy3329 333 LTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHE 412 (694)
Q Consensus 333 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~ 412 (694)
+++|+.|+|++|.|+.++.. +. .+++|+.|+|++|.|+.+|. . +..
T Consensus 246 l~~L~~L~Ls~N~l~~lp~~-~~---~l~~L~~L~Ls~N~l~~lp~------------~------------------~~~ 291 (727)
T 4b8c_D 246 YDFLTRLYLNGNSLTELPAE-IK---NLSNLRVLDLSHNRLTSLPA------------E------------------LGS 291 (727)
T ss_dssp CCSCSCCBCTTSCCSCCCGG-GG---GGTTCCEEECTTSCCSSCCS------------S------------------GGG
T ss_pred CCCCCEEEeeCCcCcccChh-hh---CCCCCCEEeCcCCcCCccCh------------h------------------hcC
Confidence 66677777777766655533 23 56666666666666654432 1 111
Q ss_pred CCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCC-CCEEEccCCccCCCcchhhhhhc
Q psy3329 413 NYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRN-ITSLNLANNNLSMTSELSFQFLD 491 (694)
Q Consensus 413 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~l~ 491 (694)
+++|+.|+|++|.++.++.. | ..+++|+.|+|++|.|++.++..+..+.. +..|+|++|.+++.+|.
T Consensus 292 ---l~~L~~L~L~~N~l~~lp~~-~--~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------ 359 (727)
T 4b8c_D 292 ---CFQLKYFYFFDNMVTTLPWE-F--GNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ 359 (727)
T ss_dssp ---GTTCSEEECCSSCCCCCCSS-T--TSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------
T ss_pred ---CCCCCEEECCCCCCCccChh-h--hcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------
Confidence 55666666666666655443 4 56666666666666666655554433211 12355666666665543
Q ss_pred ccCCCcEEECCCC--------cccccChhhhcCCCcccEEEccCCcc
Q psy3329 492 VLLELESLDLSNN--------NLTHISPTVLRHNRAITSIKLVGNPW 530 (694)
Q Consensus 492 ~l~~L~~L~ls~N--------~l~~~~~~~~~~~~~l~~l~l~~N~~ 530 (694)
.|+.|+++.| .+.+..+..+..+..+....++.|-+
T Consensus 360 ---~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil 403 (727)
T 4b8c_D 360 ---ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTL 403 (727)
T ss_dssp ---C-----------------------------------------CC
T ss_pred ---ccceeEeecccccccccCCccccccchhhcccccceeeeecccc
Confidence 3455566665 33333333344445555566666765
No 142
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.51 E-value=3.6e-14 Score=126.41 Aligned_cols=90 Identities=30% Similarity=0.361 Sum_probs=35.7
Q ss_pred cCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcC-chhhcCCCCCC
Q psy3329 259 HRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLE-SGLFQNLTHLS 337 (694)
Q Consensus 259 ~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~ 337 (694)
..+++|+.|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++++ +..+..+++|+
T Consensus 39 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~ 116 (149)
T 2je0_A 39 DEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLK 116 (149)
T ss_dssp TTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCC
T ss_pred hhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCC
Confidence 3333444444444433333 23333444444444444444333333333444444444444444332 12334444444
Q ss_pred EEeCCCCCCcccC
Q psy3329 338 VLELNNCGLTRLN 350 (694)
Q Consensus 338 ~L~L~~n~l~~~~ 350 (694)
.|++++|.+++++
T Consensus 117 ~L~l~~N~l~~~~ 129 (149)
T 2je0_A 117 SLDLFNCEVTNLN 129 (149)
T ss_dssp EEECTTCGGGGST
T ss_pred EEeCcCCcccchH
Confidence 4444444444433
No 143
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.49 E-value=3.6e-12 Score=132.76 Aligned_cols=303 Identities=13% Similarity=0.191 Sum_probs=185.9
Q ss_pred hhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCcCCccChhhhcCCCCC
Q psy3329 35 AFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHL 114 (694)
Q Consensus 35 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 114 (694)
.+....+|+.+.+.. .++.|...+|.+|.+|+.++|..+ ++.|...+|.++ +|+.+.+.. .++.+...+|..+ +|
T Consensus 41 ~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~-~L 115 (379)
T 4h09_A 41 WYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGT-DL 115 (379)
T ss_dssp TGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTC-CC
T ss_pred ccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc-eeeEeccceeccC-Cc
Confidence 455667788888875 577888888888888888888654 777888888877 677777764 3666666777665 78
Q ss_pred CEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCCcchhhhc----------c
Q psy3329 115 KTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTL----------G 184 (694)
Q Consensus 115 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~----------~ 184 (694)
+.+.+..+ +..++. ..+.++ +|+.+.+.. .++.+....|..+..++.+.+..+........... .
T Consensus 116 ~~i~lp~~-~~~i~~--~~F~~~-~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (379)
T 4h09_A 116 DDFEFPGA-TTEIGN--YIFYNS-SVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESY 190 (379)
T ss_dssp SEEECCTT-CCEECT--TTTTTC-CCCEEEECT-TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEEC
T ss_pred ccccCCCc-cccccc--cccccc-eeeeeeccc-eeeccccchhcccccccccccccccceeecccceecccccceeccc
Confidence 88888765 332232 234443 566665553 35566667777888888877765433211110000 0
Q ss_pred cCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCc
Q psy3329 185 QNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCL 264 (694)
Q Consensus 185 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L 264 (694)
..+..+..+.+.... ..+....+..+.+|+.+.+..+ +..+... .+..+..|+.+.+..+ ++.+...+|..+.+|
T Consensus 191 ~~~~~~~~~~~~~~~--~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~-~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l 265 (379)
T 4h09_A 191 PAAKTGTEFTIPSTV--KTVTAYGFSYGKNLKKITITSG-VTTLGDG-AFYGMKALDEIAIPKN-VTSIGSFLLQNCTAL 265 (379)
T ss_dssp CTTCCCSEEECCTTC--CEECTTTTTTCSSCSEEECCTT-CCEECTT-TTTTCSSCCEEEECTT-CCEECTTTTTTCTTC
T ss_pred cccccccccccccce--eEEeecccccccccceeeeccc-eeEEccc-cccCCccceEEEcCCC-ccEeCccccceeehh
Confidence 123334444443322 1222334556667777766543 2222222 3456667777777554 566666667777777
Q ss_pred cEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCC
Q psy3329 265 QELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNC 344 (694)
Q Consensus 265 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 344 (694)
+.+.+..+ +......+|.++.+|+.+.+..+.++.+...+|.+|.+|+.+.|..+ ++.+...+|.+|.+|+.+.+..+
T Consensus 266 ~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 266 KTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred cccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 77776543 44444556667777777777766677777777777777777777643 66666666777777777777543
Q ss_pred CCcccCccccc
Q psy3329 345 GLTRLNETVFH 355 (694)
Q Consensus 345 ~l~~~~~~~~~ 355 (694)
++.+...+|.
T Consensus 344 -v~~I~~~aF~ 353 (379)
T 4h09_A 344 -ITLIESGAFE 353 (379)
T ss_dssp -CCEECTTTTT
T ss_pred -cCEEchhHhh
Confidence 5666666664
No 144
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.48 E-value=5.3e-14 Score=129.11 Aligned_cols=137 Identities=22% Similarity=0.229 Sum_probs=106.8
Q ss_pred hhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCcCCccChhhhcCCCCC
Q psy3329 35 AFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHL 114 (694)
Q Consensus 35 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 114 (694)
.+..+.+|++|++++|.++.+ +......++|++|++++|.++++ ..|..+++|++|++++|.++++++..+..+++|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred hcCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 456788899999999998877 44333334999999999999887 358889999999999999998876777889999
Q ss_pred CEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCcc---ccCCCCCCcEEeCCCCCCC
Q psy3329 115 KTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDN---VFANNTWLRNLNLAENELI 175 (694)
Q Consensus 115 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~---~~~~~~~L~~L~l~~n~l~ 175 (694)
+.|++++|.+..++.+ ..+..+++|+.|++++|.+..++.. .+..+++|+.|+++.|...
T Consensus 91 ~~L~L~~N~i~~~~~~-~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 91 TELILTNNSLVELGDL-DPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSCCCCCGGGG-GGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CEEECCCCcCCcchhh-HhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 9999999988754331 2577888899999998888877654 4667777777777777644
No 145
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.46 E-value=1.1e-11 Score=129.13 Aligned_cols=307 Identities=13% Similarity=0.152 Sum_probs=222.2
Q ss_pred cccCCCCCceEEECcCCCCcchh-hhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCC
Q psy3329 11 RRNLDNPGLITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTS 89 (694)
Q Consensus 11 ~~~~~~~~L~~L~Ls~~~l~~i~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~ 89 (694)
+.|....+|+.+.+.. .++.|+ .+|.+|.+|+.+.|.. .++.+...+|.++ .|+.+.+.. .+..+...+|..+ +
T Consensus 40 ~~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~-~v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~-~ 114 (379)
T 4h09_A 40 PWYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAS-TVTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGT-D 114 (379)
T ss_dssp TTGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECT-TCCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTC-C
T ss_pred cccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCC-cceEechhhhcCC-CCceEECCc-eeeEeccceeccC-C
Confidence 3456667888888864 577887 7899999999999975 4888888889887 688887764 4777878888765 7
Q ss_pred CCEEeCCCCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCC------------CCccc
Q psy3329 90 LEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISN------------LPDNV 157 (694)
Q Consensus 90 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~------------~~~~~ 157 (694)
|+.+.+..+ ++.+...+|.++ +|+.+.+..+ ++.++. ..+.++.+++.+.+....... .....
T Consensus 115 L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~--~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (379)
T 4h09_A 115 LDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKD--GIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILES 189 (379)
T ss_dssp CSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECS--CTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEE
T ss_pred cccccCCCc-cccccccccccc-eeeeeeccce-eecccc--chhcccccccccccccccceeecccceecccccceecc
Confidence 999998764 555556667665 5666666543 333332 346677888887776543321 11223
Q ss_pred cCCCCCCcEEeCCCCCCCCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCC
Q psy3329 158 FANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPL 237 (694)
Q Consensus 158 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l 237 (694)
+..+..+..+.+..... ......+ ..+.+|+.+.+..+- ..+....|..+..|+.+.+..+ ++.+... .+..+
T Consensus 190 ~~~~~~~~~~~~~~~~~-~i~~~~f--~~~~~l~~i~~~~~~--~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~-aF~~~ 262 (379)
T 4h09_A 190 YPAAKTGTEFTIPSTVK-TVTAYGF--SYGKNLKKITITSGV--TTLGDGAFYGMKALDEIAIPKN-VTSIGSF-LLQNC 262 (379)
T ss_dssp CCTTCCCSEEECCTTCC-EECTTTT--TTCSSCSEEECCTTC--CEECTTTTTTCSSCCEEEECTT-CCEECTT-TTTTC
T ss_pred cccccccccccccccee-EEeeccc--ccccccceeeeccce--eEEccccccCCccceEEEcCCC-ccEeCcc-cccee
Confidence 45556666666554321 1111222 257788888886652 4455567888999999999765 4544433 45788
Q ss_pred CCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEec
Q psy3329 238 TKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLIL 317 (694)
Q Consensus 238 ~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 317 (694)
.+|+.+.+.. .+..+...+|..|++|+.+.+.++.+......+|.++.+|+.+.|.. .++.+...+|.+|.+|+.+.+
T Consensus 263 ~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 263 TALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT-ALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCCCCC
T ss_pred ehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc-cccEEHHHHhhCCCCCCEEEE
Confidence 9999999965 47778888899999999999998888888888999999999999975 488899999999999999999
Q ss_pred cCCcccCcCchhhcCCCCCC
Q psy3329 318 SGNKLETLESGLFQNLTHLS 337 (694)
Q Consensus 318 ~~n~l~~~~~~~l~~l~~L~ 337 (694)
..+ ++.+...+|.++..++
T Consensus 341 p~~-v~~I~~~aF~~c~~~~ 359 (379)
T 4h09_A 341 PKS-ITLIESGAFEGSSITK 359 (379)
T ss_dssp CTT-CCEECTTTTTTSSCCC
T ss_pred CCc-cCEEchhHhhCCCCCc
Confidence 765 7788888888875443
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.44 E-value=4.1e-13 Score=122.13 Aligned_cols=107 Identities=33% Similarity=0.509 Sum_probs=94.2
Q ss_pred CceEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCC
Q psy3329 18 GLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNR 97 (694)
Q Consensus 18 ~L~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~ 97 (694)
..+.++++++.++.+|..+ .++|++|+|++|.++++.+..|..+++|++|+|++|+++.+++..|..+++|++|+|++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 3578999999999998655 37899999999999999888899999999999999999999888888999999999999
Q ss_pred CcCCccChhhhcCCCCCCEEECCCCcCCc
Q psy3329 98 CNLTYISPSAFDNLNHLKTLELSQNKLKS 126 (694)
Q Consensus 98 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 126 (694)
|.++++++..|.++++|+.|++++|.+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 99999888888899999999999998764
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.43 E-value=6.5e-13 Score=121.18 Aligned_cols=106 Identities=30% Similarity=0.432 Sum_probs=91.7
Q ss_pred ceEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCC
Q psy3329 19 LITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRC 98 (694)
Q Consensus 19 L~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n 98 (694)
-+.++++++.++.+|..+. ++|++|++++|.++++.|..|.++++|++|+|++|+++.+++..|..+++|++|+|++|
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 3788999999999886553 78999999999999988888899999999999999999888887888999999999999
Q ss_pred cCCccChhhhcCCCCCCEEECCCCcCCc
Q psy3329 99 NLTYISPSAFDNLNHLKTLELSQNKLKS 126 (694)
Q Consensus 99 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 126 (694)
.++++++..|..+++|+.|++++|.+..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 9998877778888889999998888764
No 148
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.34 E-value=3.1e-15 Score=140.38 Aligned_cols=42 Identities=29% Similarity=0.276 Sum_probs=18.7
Q ss_pred cCCCCccEEEccCCcCCccCC-CCCCCCCCCCEEEccCCccCC
Q psy3329 440 PQLSRLRSLDLSRCKIDYLPP-NVFNNTRNITSLNLANNNLSM 481 (694)
Q Consensus 440 ~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~ 481 (694)
..+++|+.|++++|.++++++ ..+..+++|++|++++|.+++
T Consensus 112 ~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 112 EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred ccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 334444555555554444322 223444444444444444443
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.32 E-value=3.8e-13 Score=138.61 Aligned_cols=161 Identities=19% Similarity=0.192 Sum_probs=94.3
Q ss_pred CCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccc-----cCCCCccEEeCCCCCCccc----chhhcC
Q psy3329 213 TKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTF-----HRFTCLQELDISHNPLIDA----FTALLS 283 (694)
Q Consensus 213 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~-----~~~~~L~~L~L~~n~~~~~----~~~~~~ 283 (694)
++|+.|+|++|.+++.........+++|+.|++++|.++......+ ...++|+.|+|++|.++.. +...+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 5666777777666655444333445567777777776664433333 2356677777777777552 334445
Q ss_pred CCCCCcEEECcCCCCcccC----hhhhcCCCCCcEEeccCCcccCcCc----hhhcCCCCCCEEeCCCCCCcccCccccc
Q psy3329 284 PLESLEHLDMGYSNLQRIS----RSTFLKMTSLKTLILSGNKLETLES----GLFQNLTHLSVLELNNCGLTRLNETVFH 355 (694)
Q Consensus 284 ~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 355 (694)
.+++|++|+|++|.++... ...+..+++|++|+|++|.++.... ..+..+++|++|+|++|.|+......+.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence 6777888888887776533 3445566778888888887775433 2344567788888888887765544443
Q ss_pred cCCCCCC--CCeee--CCCCCC
Q psy3329 356 ENYTYPD--LEELR--LSGNPL 373 (694)
Q Consensus 356 ~~~~~~~--L~~L~--Ls~n~l 373 (694)
....... |+.+. +..+.+
T Consensus 261 ~~~~~~~~~L~~l~~ll~~~~~ 282 (372)
T 3un9_A 261 DLGGAAEGGARVVVSLTEGTAV 282 (372)
T ss_dssp HCC------CEEECCCC----C
T ss_pred HHhcCCCccchhhHhhhcCCcc
Confidence 2212221 55555 555544
No 150
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.29 E-value=3.9e-14 Score=132.78 Aligned_cols=117 Identities=21% Similarity=0.284 Sum_probs=60.0
Q ss_pred CcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCcCCccChhhh
Q psy3329 29 IQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAF 108 (694)
Q Consensus 29 l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 108 (694)
++.+|..+..+++|++|++++|.++.+ | .+..+++|++|++++|.++.++. .+..+++|++|++++|.++++ + .+
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n~l~~l-~-~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~L~~N~l~~l-~-~~ 111 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIKKIEN-LDAVADTLEELWISYNQIASL-S-GI 111 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEEEESCC-C-CHHHHTTCCEEEEEEEEECSCSS-HHHHHHHCSEEEEEEEECCCH-H-HH
T ss_pred HhhhhHHHhcCCCCCEEECCCCCCccc-c-ccccCCCCCEEECCCCCcccccc-hhhcCCcCCEEECcCCcCCcC-C-cc
Confidence 334444555555666666665555554 2 45555555555555555554432 234445555555555555554 2 34
Q ss_pred cCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCC
Q psy3329 109 DNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGIS 151 (694)
Q Consensus 109 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~ 151 (694)
..+++|+.|++++|.+..++.+ ..+..+++|++|++++|.+.
T Consensus 112 ~~l~~L~~L~l~~N~i~~~~~~-~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 112 EKLVNLRVLYMSNNKITNWGEI-DKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HHHHHSSEEEESEEECCCHHHH-HHHTTTTTCSEEEECSCHHH
T ss_pred ccCCCCCEEECCCCcCCchhHH-HHHhcCCCCCEEEecCCccc
Confidence 5555555555555555432211 23445555555555555543
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.23 E-value=1.4e-12 Score=134.43 Aligned_cols=161 Identities=19% Similarity=0.146 Sum_probs=83.8
Q ss_pred CCCcEEEccCCcCCccChhhcc-----CCCCCCeEECCCCCCCccCCCCC-CCCCCCCEEeCCCCcCCccChhhh-----
Q psy3329 40 RSLLYLYMQECTLSKINPQFFT-----NLTTLNKLDLSGNPLRIIEPGVF-DPLTSLEYLMLNRCNLTYISPSAF----- 108 (694)
Q Consensus 40 ~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~Ls~n~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~l----- 108 (694)
+.|+.|++++|.++......+. ..++|++|+|++|.++......+ ..+++|++|+|++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 4566666666665543333222 22466666666666543211111 224456666666666655433333
Q ss_pred cCCCCCCEEECCCCcCCccc--hhhhhhcCCCCCCEEEccCCCCCCCC----ccccCCCCCCcEEeCCCCCCCCcchhhh
Q psy3329 109 DNLNHLKTLELSQNKLKSHI--DWTLVLGNLGKLDTLDLRQSGISNLP----DNVFANNTWLRNLNLAENELIDLDVATT 182 (694)
Q Consensus 109 ~~l~~L~~L~l~~n~l~~~~--~~~~~~~~l~~L~~L~L~~n~i~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 182 (694)
...++|+.|+|++|.++..+ .++..+..+++|++|+|++|.+.... ...+..+++|++|++++|.+++......
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 23456666666666665322 23334455666666666666665322 2234455566666666666654332211
Q ss_pred c--ccCCCcccEEeCCCCCC
Q psy3329 183 L--GQNLVHLDSLDLSNCHL 200 (694)
Q Consensus 183 ~--~~~~~~L~~L~l~~n~~ 200 (694)
. ....++|++|++++|.+
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSC
T ss_pred HHHHHhCCCCCEEeccCCCC
Confidence 1 11346677777777766
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.19 E-value=5e-11 Score=122.44 Aligned_cols=105 Identities=23% Similarity=0.299 Sum_probs=88.3
Q ss_pred eEEECcCC-CCcchhhhhhcCCCCcEEEccC-CcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCC
Q psy3329 20 ITINLNAN-PIQPVEGAFLVARSLLYLYMQE-CTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNR 97 (694)
Q Consensus 20 ~~L~Ls~~-~l~~i~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~ 97 (694)
..++++++ .++.+|. +..+++|++|+|++ |.++.+.+..|.++++|+.|+|++|.++++++..|.++++|++|+|++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 35688887 8888888 88888899999986 888888888888899999999999988888888888888899999998
Q ss_pred CcCCccChhhhcCCCCCCEEECCCCcCCc
Q psy3329 98 CNLTYISPSAFDNLNHLKTLELSQNKLKS 126 (694)
Q Consensus 98 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 126 (694)
|.|+++++..|..++ |+.|++.+|.+..
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 888888777776665 8888888887764
No 153
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=98.90 E-value=4.2e-09 Score=89.98 Aligned_cols=70 Identities=27% Similarity=0.596 Sum_probs=56.2
Q ss_pred EEEccCCccC--CCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEEEccCCccccccCcHHHHHHHHhc
Q psy3329 471 SLNLANNNLS--MTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEWATRE 546 (694)
Q Consensus 471 ~L~L~~N~l~--~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~~~~~~~~~~~~ 546 (694)
.++.+++.++ .++. .+ -++|+.|+|++|+|+.+.+..|..+++|+.|+|.+|||.|||.+.||..|+...
T Consensus 12 ~v~Cs~~~L~~~~vP~-~l-----p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~~~ 83 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPT-AF-----PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGR 83 (130)
T ss_dssp EEECCSSCCCTTTSCS-CC-----CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHHTS
T ss_pred EEEeCCCCCccccCCC-CC-----CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHHHHHhC
Confidence 5666666666 3332 12 236788888888888888888888999999999999999999999999999873
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.64 E-value=2.7e-08 Score=101.36 Aligned_cols=84 Identities=18% Similarity=0.301 Sum_probs=46.9
Q ss_pred CCCCccEEEccCcCCCcCCcccc---cCCCCccEEeCCCCCCccc----chhhcCCCCCCcEEECcCCCCcccChhhhcC
Q psy3329 236 PLTKLHRLSLRNCGLSRLPANTF---HRFTCLQELDISHNPLIDA----FTALLSPLESLEHLDMGYSNLQRISRSTFLK 308 (694)
Q Consensus 236 ~l~~L~~L~l~~n~i~~~~~~~~---~~~~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 308 (694)
.+++|+.|++.+|.+.......+ ..+++|+.|+|+.|.+.+. +...+..+++|+.|+|+.|.++......+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 35666666666666553211111 2356777777777776653 2222234577777777777766444334432
Q ss_pred -CCCCcEEeccCCc
Q psy3329 309 -MTSLKTLILSGNK 321 (694)
Q Consensus 309 -l~~L~~L~L~~n~ 321 (694)
+ ...+++++++
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 2 3456777665
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.62 E-value=4.4e-08 Score=99.78 Aligned_cols=137 Identities=18% Similarity=0.207 Sum_probs=67.8
Q ss_pred ccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcC--CCCCCcEEECcC--CC------CcccCh
Q psy3329 234 LKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLS--PLESLEHLDMGY--SN------LQRISR 303 (694)
Q Consensus 234 l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~--~l~~L~~L~L~~--n~------l~~~~~ 303 (694)
+..+|+|+.|++++|.-..+++ + .+++|+.|++..|.+.......+. .+|+|++|+|+. +. +..+.+
T Consensus 168 l~~~P~L~~L~L~g~~~l~l~~--~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLSIGK--K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp HHTCTTCCEEEEECCBTCBCCS--C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred HhcCCCCcEEEEeCCCCceecc--c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 3455666666666552112221 2 255666666666665443332232 466666666632 11 111111
Q ss_pred hhh--cCCCCCcEEeccCCcccCcCchhh---cCCCCCCEEeCCCCCCcccCccccccC-CCCCCCCeeeCCCCCCc
Q psy3329 304 STF--LKMTSLKTLILSGNKLETLESGLF---QNLTHLSVLELNNCGLTRLNETVFHEN-YTYPDLEELRLSGNPLH 374 (694)
Q Consensus 304 ~~~--~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~L~~L~Ls~n~l~ 374 (694)
.+ ..+++|+.|+|.+|.+.......+ ..+++|++|+|+.|.+++.....+... ..+++|+.|++++|.++
T Consensus 245 -~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 245 -LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp -GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred -HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 11 235677777776666653222112 235667777777776665322222110 13566777777777654
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.34 E-value=4.2e-07 Score=83.34 Aligned_cols=68 Identities=19% Similarity=0.189 Sum_probs=30.8
Q ss_pred hhcCCCCcEEEcCCC-CCCccchh---hhccCCCCccEEEccCcCCCcCC----cccccCCCCccEEeCCCCCCcc
Q psy3329 209 FVNATKLRTLYLSGN-PLSAADLS---VALKPLTKLHRLSLRNCGLSRLP----ANTFHRFTCLQELDISHNPLID 276 (694)
Q Consensus 209 ~~~~~~L~~L~L~~n-~l~~~~~~---~~l~~l~~L~~L~l~~n~i~~~~----~~~~~~~~~L~~L~L~~n~~~~ 276 (694)
+...+.|++|+|++| .+.+.... ..+...++|++|+|++|.+.... ...+...++|++|+|++|.+.+
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 444566666666666 55543321 12233445555555555544311 1122233444455555444443
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.30 E-value=3.1e-07 Score=84.24 Aligned_cols=90 Identities=17% Similarity=0.186 Sum_probs=44.2
Q ss_pred ccCCCCccEEEccCc-CCCcCC----cccccCCCCccEEeCCCCCCccc----chhhcCCCCCCcEEECcCCCCcccC--
Q psy3329 234 LKPLTKLHRLSLRNC-GLSRLP----ANTFHRFTCLQELDISHNPLIDA----FTALLSPLESLEHLDMGYSNLQRIS-- 302 (694)
Q Consensus 234 l~~l~~L~~L~l~~n-~i~~~~----~~~~~~~~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~-- 302 (694)
+...++|++|++++| .+.... ...+...++|++|+|++|.+.+. +...+...++|++|+|++|.|+...
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 455566666666666 665321 12334455566666666665442 2233334455555555555555321
Q ss_pred --hhhhcCCCCCcEEec--cCCccc
Q psy3329 303 --RSTFLKMTSLKTLIL--SGNKLE 323 (694)
Q Consensus 303 --~~~~~~l~~L~~L~L--~~n~l~ 323 (694)
...+...++|++|+| ++|.++
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHHhCCCceEEEecCCCCCCC
Confidence 123334445555555 444444
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.20 E-value=9.6e-07 Score=85.01 Aligned_cols=81 Identities=23% Similarity=0.309 Sum_probs=40.1
Q ss_pred CCCCccEEEccCCcCCccCC--CCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccCh-------
Q psy3329 441 QLSRLRSLDLSRCKIDYLPP--NVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISP------- 511 (694)
Q Consensus 441 ~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~------- 511 (694)
++++|+.|+|++|+|+++.+ ..+..+++|+.|+|++|+|++. ..+..+..+ +|++|+|++|.+.+..|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGL-KLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccC-CcceEEccCCcCccccCcchhHHH
Confidence 34555555555555555332 2334555566666666665554 122222223 56666666666655332
Q ss_pred hhhcCCCcccEEE
Q psy3329 512 TVLRHNRAITSIK 524 (694)
Q Consensus 512 ~~~~~~~~l~~l~ 524 (694)
..+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 2344555565553
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.15 E-value=6.3e-07 Score=86.31 Aligned_cols=83 Identities=25% Similarity=0.288 Sum_probs=50.6
Q ss_pred cCCCCCCeEECCCCCCCccC--CCCCCCCCCCCEEeCCCCcCCccChhhhcCCC--CCCEEECCCCcCCccc-----hhh
Q psy3329 61 TNLTTLNKLDLSGNPLRIIE--PGVFDPLTSLEYLMLNRCNLTYISPSAFDNLN--HLKTLELSQNKLKSHI-----DWT 131 (694)
Q Consensus 61 ~~l~~L~~L~Ls~n~~~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~l~~n~l~~~~-----~~~ 131 (694)
.++++|+.|+|++|.++++. +..+..+++|+.|+|++|.|+++ ..+..+. +|+.|+|++|.+.... -..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 45667777777777776643 23345677777777777777765 2233333 7777777777776310 012
Q ss_pred hhhcCCCCCCEEEc
Q psy3329 132 LVLGNLGKLDTLDL 145 (694)
Q Consensus 132 ~~~~~l~~L~~L~L 145 (694)
..+..+++|+.||=
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 34666778877753
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.83 E-value=9.4e-06 Score=72.21 Aligned_cols=34 Identities=12% Similarity=0.107 Sum_probs=13.6
Q ss_pred CCcEEeccCC-cccCcCchhhcCCCCCCEEeCCCC
Q psy3329 311 SLKTLILSGN-KLETLESGLFQNLTHLSVLELNNC 344 (694)
Q Consensus 311 ~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n 344 (694)
+|++|+|++| +++...-..+..+++|+.|++++|
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL 149 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESC
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCC
Confidence 3444444443 233322223334444444444444
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.81 E-value=1.4e-05 Score=71.07 Aligned_cols=82 Identities=15% Similarity=0.222 Sum_probs=41.9
Q ss_pred CccEEEccCcCCCcCCcccccCCCCccEEeCCCCC-CcccchhhcCCC----CCCcEEECcCC-CCcccChhhhcCCCCC
Q psy3329 239 KLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNP-LIDAFTALLSPL----ESLEHLDMGYS-NLQRISRSTFLKMTSL 312 (694)
Q Consensus 239 ~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~-~~~~~~~~~~~l----~~L~~L~L~~n-~l~~~~~~~~~~l~~L 312 (694)
.|+.|++++|.++......+..+++|++|+|++|. +++.-...+..+ ++|++|+|++| .++...-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45666666665554443444555566666666553 444333333332 34556666555 3554333344555556
Q ss_pred cEEeccCC
Q psy3329 313 KTLILSGN 320 (694)
Q Consensus 313 ~~L~L~~n 320 (694)
++|+|++|
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 66666555
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.26 E-value=0.00045 Score=62.65 Aligned_cols=87 Identities=11% Similarity=0.049 Sum_probs=39.8
Q ss_pred CCCCCEEeCCCCcCCccC----hhhhcCCCCCCEEECCCCcCCccc--hhhhhhcCCCCCCEEEccCCCCCCCC------
Q psy3329 87 LTSLEYLMLNRCNLTYIS----PSAFDNLNHLKTLELSQNKLKSHI--DWTLVLGNLGKLDTLDLRQSGISNLP------ 154 (694)
Q Consensus 87 l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~~l~~L~~L~L~~n~i~~~~------ 154 (694)
-+.|+.|+|++|.|.+.. .+++..-+.|+.|+|++|.|...+ .+...+..-+.|++|+|+++....+.
T Consensus 69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ 148 (197)
T 1pgv_A 69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD 148 (197)
T ss_dssp CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHH
Confidence 344555555555544321 233334455555555555555432 22234444455666666543221111
Q ss_pred -ccccCCCCCCcEEeCCCCC
Q psy3329 155 -DNVFANNTWLRNLNLAENE 173 (694)
Q Consensus 155 -~~~~~~~~~L~~L~l~~n~ 173 (694)
...+...+.|+.|+++.+.
T Consensus 149 ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 149 MMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHhCCCcCeEeccCCC
Confidence 1234445556666665543
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.24 E-value=0.00092 Score=60.59 Aligned_cols=85 Identities=16% Similarity=0.175 Sum_probs=39.0
Q ss_pred cCCCCcEEEcCCC-CCCccch---hhhccCCCCccEEEccCcCCCcCCc----ccccCCCCccEEeCCCCCCccc----c
Q psy3329 211 NATKLRTLYLSGN-PLSAADL---SVALKPLTKLHRLSLRNCGLSRLPA----NTFHRFTCLQELDISHNPLIDA----F 278 (694)
Q Consensus 211 ~~~~L~~L~L~~n-~l~~~~~---~~~l~~l~~L~~L~l~~n~i~~~~~----~~~~~~~~L~~L~L~~n~~~~~----~ 278 (694)
.-+.|+.|+|+++ .+.+... ...+..-+.|+.|+|++|.|.+... ..+...+.|+.|+|++|.|.+. +
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3455666666553 5544321 1123344555555555555553221 2223344555555555555432 2
Q ss_pred hhhcCCCCCCcEEECcC
Q psy3329 279 TALLSPLESLEHLDMGY 295 (694)
Q Consensus 279 ~~~~~~l~~L~~L~L~~ 295 (694)
..++...+.|++|+|++
T Consensus 119 a~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHTTTTCCCSEEECCC
T ss_pred HHHHhhCCceeEEECCC
Confidence 23344444455555543
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.11 E-value=0.00082 Score=56.88 Aligned_cols=57 Identities=19% Similarity=0.276 Sum_probs=43.2
Q ss_pred ceEEcCCCCCc--ccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCC
Q psy3329 420 EELRLSGNPLH--VLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSM 481 (694)
Q Consensus 420 ~~L~Ls~n~l~--~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 481 (694)
..++.+++.++ .++.. + -++|+.|+|++|+|+.+++..|..+++|+.|+|++|.+.-
T Consensus 11 ~~v~Cs~~~L~~~~vP~~-l----p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTA-F----PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTSCSC-C----CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccCCCC-C----CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 36788888887 66543 2 2468888888888888888888888888888888887764
No 165
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=96.92 E-value=5.5e-05 Score=75.07 Aligned_cols=30 Identities=17% Similarity=0.171 Sum_probs=24.0
Q ss_pred cceeecccceeeehhhh------hhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVII------LSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~------~g~~vaV~~~~~~ 670 (694)
+.||+|+||.||||++. +|+.||||+....
T Consensus 32 ~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~ 67 (308)
T 4gt4_A 32 EELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDK 67 (308)
T ss_dssp EEEEECSSCEEEEEEEC-------CEEEEEEECCC-
T ss_pred eEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcc
Confidence 56999999999999973 4568999987644
No 166
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=96.80 E-value=0.00013 Score=72.37 Aligned_cols=33 Identities=18% Similarity=0.219 Sum_probs=27.6
Q ss_pred cceeecccceeeehhhhhhhhHHHHHHHhhHhHh
Q psy3329 641 SFLTLGNFGLISVGVIILSAMVYFSFYARHLYRT 674 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~~~~~ 674 (694)
+.||+|+||.||+|++ .|+.||||+......+.
T Consensus 9 ~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~~~~ 41 (303)
T 3hmm_A 9 ESIGKGRFGEVWRGKW-RGEEVAVKIFSSREERS 41 (303)
T ss_dssp EEEEECSSSEEEEEEE-TTEEEEEEEECGGGHHH
T ss_pred EEEeeCCCeEEEEEEE-CCEEEEEEEECccchhh
Confidence 5799999999999998 68899999986654443
No 167
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=95.90 E-value=0.00054 Score=68.85 Aligned_cols=50 Identities=14% Similarity=0.124 Sum_probs=37.0
Q ss_pred cCCCccccccccCcc----cceeecccceeeehhhhhhhhHHHHHHHhhHhHhh
Q psy3329 626 RAAPSYINMEKLNSK----SFLTLGNFGLISVGVIILSAMVYFSFYARHLYRTK 675 (694)
Q Consensus 626 ~~~~s~~~l~~~~~~----~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~~~~~~ 675 (694)
...+++.++..+.++ +.||+|+||.||+|+..+|+.||||+.........
T Consensus 17 ~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~ 70 (326)
T 3uim_A 17 LKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGG 70 (326)
T ss_dssp CEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----C
T ss_pred cceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchH
Confidence 445677777776554 79999999999999999999999998776554433
No 168
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=95.86 E-value=0.00059 Score=67.35 Aligned_cols=40 Identities=10% Similarity=0.058 Sum_probs=27.3
Q ss_pred cceeecccceeeehh-hhhhhhHHHHHHHhhHhHhhhhhhh
Q psy3329 641 SFLTLGNFGLISVGV-IILSAMVYFSFYARHLYRTKQQRIR 680 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~-l~~g~~vaV~~~~~~~~~~~~~~~~ 680 (694)
+.||+|+||.||+|+ ..+|..||||+.........++++.
T Consensus 11 ~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~ 51 (299)
T 4g31_A 11 QCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVM 51 (299)
T ss_dssp EEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHH
T ss_pred eEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHH
Confidence 579999999999997 4578899999875444333334433
No 169
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=95.83 E-value=0.00065 Score=67.98 Aligned_cols=31 Identities=19% Similarity=0.086 Sum_probs=25.2
Q ss_pred ccceeecccceeeehhhh------hhhhHHHHHHHhh
Q psy3329 640 KSFLTLGNFGLISVGVII------LSAMVYFSFYARH 670 (694)
Q Consensus 640 ~~~iG~G~fG~VYkg~l~------~g~~vaV~~~~~~ 670 (694)
.+.||+|+||.||+|++. +|+.||||+....
T Consensus 46 ~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~ 82 (329)
T 4aoj_A 46 KWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA 82 (329)
T ss_dssp EEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCC
T ss_pred EEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcC
Confidence 367999999999999874 5779999987643
No 170
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=95.72 E-value=0.00072 Score=66.67 Aligned_cols=30 Identities=17% Similarity=0.097 Sum_probs=22.8
Q ss_pred cceeecccceeeehhhh------hhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVII------LSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~------~g~~vaV~~~~~~ 670 (694)
+.||+|+||.||+|++. +|+.||||+....
T Consensus 19 ~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~ 54 (299)
T 4asz_A 19 RELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDA 54 (299)
T ss_dssp EEEEC--CCCEEEEEECSCC----CEEEEEEEECSC
T ss_pred eEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCC
Confidence 57999999999999874 4779999987654
No 171
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=95.24 E-value=0.0014 Score=66.13 Aligned_cols=36 Identities=14% Similarity=0.095 Sum_probs=26.8
Q ss_pred cceeecccceeeehhhhh------hhhHHHHHHHhhHhHhhh
Q psy3329 641 SFLTLGNFGLISVGVIIL------SAMVYFSFYARHLYRTKQ 676 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~------g~~vaV~~~~~~~~~~~~ 676 (694)
+.||+|+||.||+|+... +++||||+......+..+
T Consensus 70 ~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~ 111 (353)
T 4ase_A 70 KPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEH 111 (353)
T ss_dssp EEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHH
T ss_pred eEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHH
Confidence 679999999999997543 358999987655444333
No 172
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=94.99 E-value=0.002 Score=64.43 Aligned_cols=43 Identities=19% Similarity=0.254 Sum_probs=32.7
Q ss_pred CCccccccccCcc----cceeecccceeeehhhhhhhhHHHHHHHhh
Q psy3329 628 APSYINMEKLNSK----SFLTLGNFGLISVGVIILSAMVYFSFYARH 670 (694)
Q Consensus 628 ~~s~~~l~~~~~~----~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~ 670 (694)
++++.++..+.++ ..||+|+||.||+|+..+|..||||+....
T Consensus 28 ~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~ 74 (321)
T 2qkw_B 28 RVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPE 74 (321)
T ss_dssp --CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSC
T ss_pred eecHHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEeccc
Confidence 3445556555444 789999999999999988999999976544
No 173
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=94.89 E-value=0.0019 Score=63.66 Aligned_cols=26 Identities=19% Similarity=0.165 Sum_probs=21.9
Q ss_pred cceeecccceeeehhhhhhhhHHHHHHH
Q psy3329 641 SFLTLGNFGLISVGVIILSAMVYFSFYA 668 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~ 668 (694)
+.||+|+||+||+|++.+ .||||+..
T Consensus 42 ~~iG~G~fG~Vy~~~~~~--~vAvK~~~ 67 (307)
T 3omv_A 42 TRIGSGSFGTVYKGKWHG--DVAVKILK 67 (307)
T ss_dssp EECCCCSSSEEEEEESSS--EEEEEECC
T ss_pred eEEeeCCCcEEEEEEECC--cEEEEEEE
Confidence 579999999999999865 37888764
No 174
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=94.77 E-value=0.0028 Score=62.47 Aligned_cols=31 Identities=13% Similarity=0.192 Sum_probs=26.4
Q ss_pred cceeecccceeeehh-hhhhhhHHHHHHHhhH
Q psy3329 641 SFLTLGNFGLISVGV-IILSAMVYFSFYARHL 671 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~-l~~g~~vaV~~~~~~~ 671 (694)
..||+|+||.||+|+ ..+|..||||+.....
T Consensus 38 ~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~ 69 (311)
T 4aw0_A 38 KILGEGSFSTVVLARELATSREYAIKILEKRH 69 (311)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEEEEEHHH
T ss_pred EEEecccCeEEEEEEECCCCCEEEEEEEEHHH
Confidence 689999999999997 4678899999876554
No 175
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=94.66 E-value=0.0022 Score=64.30 Aligned_cols=30 Identities=10% Similarity=-0.087 Sum_probs=19.6
Q ss_pred cceeecccceeeehh-hhhhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGV-IILSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~-l~~g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+ ..+|..||||+....
T Consensus 30 ~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~ 60 (350)
T 4b9d_A 30 QKIGEGSFGKAILVKSTEDGRQYVIKEINIS 60 (350)
T ss_dssp EEC------CEEEEEETTTCCEEEEEEEECT
T ss_pred EEEecCCCeEEEEEEECCCCCEEEEEEEehH
Confidence 679999999999997 467889999987543
No 176
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=94.53 E-value=0.0037 Score=61.12 Aligned_cols=30 Identities=13% Similarity=0.100 Sum_probs=24.0
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+-. .|..||||+....
T Consensus 32 ~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~ 62 (290)
T 3fpq_A 32 IEIGRGSFKTVYKGLDTETTVEVAWCELQDR 62 (290)
T ss_dssp EEEEECSSEEEEEEEETTTCCEEEEEEEEGG
T ss_pred eEEecCcCcEEEEEEECCCCeEEEEEEEchh
Confidence 36999999999999854 4668999876543
No 177
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=94.46 E-value=0.0029 Score=61.24 Aligned_cols=30 Identities=17% Similarity=0.272 Sum_probs=22.4
Q ss_pred cceeecccceeeehh-hhhhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGV-IILSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~-l~~g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+ ..+|..||||+....
T Consensus 19 ~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~ 49 (275)
T 3hyh_A 19 KTLGEGSFGKVKLAYHTTTGQKVALKIINKK 49 (275)
T ss_dssp EEEEC---CCEEEEECTTTCCEEEEEEEECC
T ss_pred EEEecCcCeEEEEEEECCCCCEEEEEEEeHH
Confidence 579999999999997 457889999987543
No 178
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=94.16 E-value=0.0033 Score=65.38 Aligned_cols=30 Identities=3% Similarity=-0.274 Sum_probs=26.7
Q ss_pred cccceeecccceeeehh-hhhhhhHHHHHHH
Q psy3329 639 SKSFLTLGNFGLISVGV-IILSAMVYFSFYA 668 (694)
Q Consensus 639 ~~~~iG~G~fG~VYkg~-l~~g~~vaV~~~~ 668 (694)
-.++||+|+||.||+|+ ..+|..||||+..
T Consensus 82 ~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~ 112 (413)
T 3dzo_A 82 RGTVLGQEDPYAYLEATDQETGESFEVHVPY 112 (413)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCEEEEEEEC
T ss_pred EecccccCCCEEEEEEEecCCCCceEEEEEe
Confidence 34789999999999999 7789999999876
No 179
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=93.95 E-value=0.0044 Score=61.83 Aligned_cols=31 Identities=10% Similarity=-0.075 Sum_probs=25.9
Q ss_pred cceeecccceeeehhh-hhhhhHHHHHHHhhH
Q psy3329 641 SFLTLGNFGLISVGVI-ILSAMVYFSFYARHL 671 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~~ 671 (694)
..||+|+||.||+|+- ..|..||||+.....
T Consensus 64 ~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~ 95 (336)
T 4g3f_A 64 PRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEV 95 (336)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEEEEETTT
T ss_pred cEeccCCCeEEEEEEECCCCCEEEEEEECHHH
Confidence 5799999999999984 568899999876543
No 180
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=93.78 E-value=0.0061 Score=61.05 Aligned_cols=30 Identities=10% Similarity=0.150 Sum_probs=25.1
Q ss_pred cceeecccceeeehhh-hhhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVI-ILSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+- .+|..||||+....
T Consensus 80 ~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~ 110 (346)
T 4fih_A 80 IKIGEGSTGIVCIATVRSSGKLVAVKKMDLR 110 (346)
T ss_dssp EEEEECSSCEEEEEEETTTCCEEEEEEEEGG
T ss_pred EEeecCcCeEEEEEEECCCCCEEEEEEEecC
Confidence 4699999999999985 46889999987543
No 181
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Probab=93.73 E-value=0.0077 Score=59.40 Aligned_cols=31 Identities=13% Similarity=0.156 Sum_probs=26.5
Q ss_pred cceeecccceeeehhhhhhhhHHHHHHHhhHh
Q psy3329 641 SFLTLGNFGLISVGVIILSAMVYFSFYARHLY 672 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~~~ 672 (694)
..||+|+||.||+|+. +|..||||+......
T Consensus 14 ~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~ 44 (301)
T 3q4u_A 14 ECVGKGRYGEVWRGSW-QGENVAVKIFSSRDE 44 (301)
T ss_dssp EEEEECSSEEEEEEEE-TTEEEEEEEECGGGH
T ss_pred EeeccCCCcEEEEEEE-CCEEEEEEEeccccc
Confidence 6899999999999998 788999998765433
No 182
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=93.58 E-value=0.0089 Score=59.72 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=28.0
Q ss_pred cceeecccceeeehhhhhhhhHHHHHHHhhHhHhhh
Q psy3329 641 SFLTLGNFGLISVGVIILSAMVYFSFYARHLYRTKQ 676 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~~~~~~~ 676 (694)
..||+|+||.||+|+.. |..||||+......+..+
T Consensus 30 ~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~~~~~~ 64 (322)
T 3soc_A 30 EVKARGRFGCVWKAQLL-NEYVAVKIFPIQDKQSWQ 64 (322)
T ss_dssp EEEECSTTCEEEEEEET-TEEEEEEEECGGGHHHHH
T ss_pred heecccCceEEEEEEEC-CCEEEEEEeecCchHHHH
Confidence 68999999999999985 789999998655444333
No 183
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=93.56 E-value=0.0049 Score=61.84 Aligned_cols=29 Identities=10% Similarity=-0.003 Sum_probs=24.5
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHh
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYAR 669 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~ 669 (694)
..||+|+||.||+|+.. +|..||||+...
T Consensus 12 ~~lG~G~~g~V~~a~~~~~~~~vavK~~~~ 41 (332)
T 3qd2_B 12 QCMGRGGFGVVFEAKNKVDDCNYAIKRIRL 41 (332)
T ss_dssp EEEECC-CSEEEEEEETTTCCEEEEEEEEC
T ss_pred eEecCCCCeEEEEEEEcCCCcEEEEEEeec
Confidence 67999999999999986 788999998754
No 184
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=93.42 E-value=0.0044 Score=61.42 Aligned_cols=43 Identities=16% Similarity=0.268 Sum_probs=33.3
Q ss_pred cCCCccccccccCcc----------cceeecccceeeehhhhhhhhHHHHHHHh
Q psy3329 626 RAAPSYINMEKLNSK----------SFLTLGNFGLISVGVIILSAMVYFSFYAR 669 (694)
Q Consensus 626 ~~~~s~~~l~~~~~~----------~~iG~G~fG~VYkg~l~~g~~vaV~~~~~ 669 (694)
...+++.++.+++++ +.||+|+||.||+|+. +|+.||||+...
T Consensus 12 ~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~ 64 (307)
T 2nru_A 12 FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAA 64 (307)
T ss_dssp CEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECC
T ss_pred CCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEec
Confidence 345667777776433 6899999999999997 678899997654
No 185
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3hmm_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=93.42 E-value=0.0099 Score=58.65 Aligned_cols=33 Identities=18% Similarity=0.219 Sum_probs=25.6
Q ss_pred ccceeecccceeeehhhhhhhhHHHHHHHhhHhH
Q psy3329 640 KSFLTLGNFGLISVGVIILSAMVYFSFYARHLYR 673 (694)
Q Consensus 640 ~~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~~~~ 673 (694)
...||+|+||.||+|+. .|..||||+......+
T Consensus 8 ~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~ 40 (303)
T 3gxj_A 8 QESIGKGRFGEVWRGKW-RGEEVAVKIFSSREER 40 (303)
T ss_dssp CEEEEECSSSEEEEC-C-TTSCEEEEECC-TTHH
T ss_pred hhhccCCCCeEEEEEEE-cCcceEEEEecccchh
Confidence 35799999999999998 4889999997654433
No 186
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=93.37 E-value=0.0073 Score=61.81 Aligned_cols=32 Identities=16% Similarity=0.173 Sum_probs=25.7
Q ss_pred cccceeecccceeeehhhh----hhhhHHHHHHHhh
Q psy3329 639 SKSFLTLGNFGLISVGVII----LSAMVYFSFYARH 670 (694)
Q Consensus 639 ~~~~iG~G~fG~VYkg~l~----~g~~vaV~~~~~~ 670 (694)
-.+.||+|+||.||+|+.. +|..||||+....
T Consensus 49 ~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~ 84 (373)
T 2qol_A 49 IDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVG 84 (373)
T ss_dssp CCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTT
T ss_pred eeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCc
Confidence 3478999999999999986 5678999987654
No 187
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=93.21 E-value=0.0057 Score=60.83 Aligned_cols=28 Identities=14% Similarity=-0.051 Sum_probs=24.8
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHH
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYA 668 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~ 668 (694)
..||+|+||+||+|+.. +|..||||+..
T Consensus 63 ~~LG~G~~g~Vy~~~~~~~~~~vavK~~~ 91 (311)
T 3p1a_A 63 SRLGHGSYGEVFKVRSKEDGRLYAVKRSM 91 (311)
T ss_dssp EEEEEETTEEEEEEEETTTSCEEEEEEES
T ss_pred heeccCCCeEEEEEEECCCCeEEEEEEec
Confidence 68999999999999887 78899999754
No 188
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=93.10 E-value=0.012 Score=59.13 Aligned_cols=35 Identities=11% Similarity=0.153 Sum_probs=28.2
Q ss_pred cceeecccceeeehhhhhhhhHHHHHHHhhHhHhhh
Q psy3329 641 SFLTLGNFGLISVGVIILSAMVYFSFYARHLYRTKQ 676 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~~~~~~~ 676 (694)
..||+|+||.||+|+. +|..||||+......+..+
T Consensus 19 ~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~ 53 (336)
T 3g2f_A 19 ELIGRGRYGAVYKGSL-DERPVAVKVFSFANRQNFI 53 (336)
T ss_dssp EEEEECSSEEEEEEEE-TTEEEEEEEEEGGGHHHHH
T ss_pred eecccCCCeEEEEEEE-CCeEEEEEEeeccchhhHH
Confidence 6899999999999987 7889999998655444333
No 189
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=93.09 E-value=0.007 Score=60.59 Aligned_cols=35 Identities=11% Similarity=0.107 Sum_probs=27.0
Q ss_pred cceeecccceeeehhhh----hhhhHHHHHHHhhHhHhh
Q psy3329 641 SFLTLGNFGLISVGVII----LSAMVYFSFYARHLYRTK 675 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~----~g~~vaV~~~~~~~~~~~ 675 (694)
+.||+|+||.||+|+.. .+..||||+.........
T Consensus 55 ~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~ 93 (325)
T 3kul_A 55 KIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQ 93 (325)
T ss_dssp EEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHH
T ss_pred eEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHH
Confidence 78999999999999984 444699998865433333
No 190
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=93.05 E-value=0.0079 Score=61.65 Aligned_cols=30 Identities=20% Similarity=0.230 Sum_probs=26.2
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+.. +|+.||||+....
T Consensus 120 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~ 150 (377)
T 3cbl_A 120 EQIGRGNFGEVFSGRLRADNTLVAVKSCRET 150 (377)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEEECCTT
T ss_pred eEeccCCCCeEEEEEEecCCeEEEEEEcccc
Confidence 68999999999999986 7889999987644
No 191
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=93.05 E-value=0.0082 Score=61.02 Aligned_cols=38 Identities=13% Similarity=0.111 Sum_probs=28.6
Q ss_pred cceeecccceeeehh------hhhhhhHHHHHHHhhHhHhhhhh
Q psy3329 641 SFLTLGNFGLISVGV------IILSAMVYFSFYARHLYRTKQQR 678 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~------l~~g~~vaV~~~~~~~~~~~~~~ 678 (694)
..||+|+||.||+|+ ..+|..||||+..........++
T Consensus 28 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~ 71 (359)
T 3vhe_A 28 KPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRA 71 (359)
T ss_dssp EEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHH
T ss_pred eeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHH
Confidence 689999999999995 55667999999865444433333
No 192
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=92.96 E-value=0.0088 Score=61.47 Aligned_cols=29 Identities=14% Similarity=0.192 Sum_probs=25.0
Q ss_pred cceeecccceeeehhh-hhhhhHHHHHHHh
Q psy3329 641 SFLTLGNFGLISVGVI-ILSAMVYFSFYAR 669 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~ 669 (694)
..||+|+||.||+|+- ..|..||||+...
T Consensus 60 ~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~ 89 (398)
T 4b99_A 60 ETIGNGAYGVVSSARRRLTGQQVAIKKIPN 89 (398)
T ss_dssp EEEEECSSCEEEEEEETTTCCEEEEEEETT
T ss_pred EEEecccCeEEEEEEECCCCCEEEEEEECc
Confidence 6899999999999974 5788999998653
No 193
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=92.84 E-value=0.01 Score=60.43 Aligned_cols=35 Identities=9% Similarity=-0.093 Sum_probs=26.2
Q ss_pred cceeecccceeeeh------hhhhhhhHHHHHHHhhHhHhh
Q psy3329 641 SFLTLGNFGLISVG------VIILSAMVYFSFYARHLYRTK 675 (694)
Q Consensus 641 ~~iG~G~fG~VYkg------~l~~g~~vaV~~~~~~~~~~~ 675 (694)
..||+|+||.||+| ....|..||||+......+..
T Consensus 71 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~ 111 (365)
T 3e7e_A 71 HLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANPWEF 111 (365)
T ss_dssp EEEEECSSEEEEEEEC-------CCCCEEEEEESSCCHHHH
T ss_pred EEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCChhHH
Confidence 68999999999999 466778999999876544433
No 194
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}
Probab=92.75 E-value=0.011 Score=59.06 Aligned_cols=32 Identities=9% Similarity=0.094 Sum_probs=26.8
Q ss_pred cceeecccceeeehhhhh-hhhHHHHHHHhhHh
Q psy3329 641 SFLTLGNFGLISVGVIIL-SAMVYFSFYARHLY 672 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~-g~~vaV~~~~~~~~ 672 (694)
..||+|+||.||+|+... |..||||+......
T Consensus 15 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~ 47 (319)
T 4euu_A 15 DILGQGATANVFRGRHKKTGDLFAIKVFNNISF 47 (319)
T ss_dssp EEEEECSSEEEEEEEETTTCCEEEEEEECGGGG
T ss_pred EEecCCCCeEEEEEEECCCCcEEEEEEeccccc
Confidence 689999999999998765 77999998765443
No 195
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A
Probab=92.75 E-value=0.013 Score=58.51 Aligned_cols=40 Identities=13% Similarity=0.120 Sum_probs=30.4
Q ss_pred cccceeecccceeeehhhh-hhhhHHHHHHHhhHhHhhhhh
Q psy3329 639 SKSFLTLGNFGLISVGVII-LSAMVYFSFYARHLYRTKQQR 678 (694)
Q Consensus 639 ~~~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~~~~~~~~ 678 (694)
....||+|+||.||+|+.. +|..||||+.........+++
T Consensus 15 ~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~e 55 (325)
T 3kn6_A 15 KDKPLGEGSFSICRKCVHKKSNQAFAVKIISKRMEANTQKE 55 (325)
T ss_dssp TSCCSEEETTEEEEEEEETTTCCEEEEEEEEGGGHHHHHHH
T ss_pred CCCccccCCCeEEEEEEECCCCCEEEEEEEChhhhhhHHHH
Confidence 3478999999999999875 577999999876544444333
No 196
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=92.38 E-value=0.011 Score=60.89 Aligned_cols=30 Identities=10% Similarity=0.150 Sum_probs=25.2
Q ss_pred cceeecccceeeehhh-hhhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVI-ILSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+- .+|..||||+....
T Consensus 157 ~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~ 187 (423)
T 4fie_A 157 IKIGEGSTGIVCIATVRSSGKLVAVKKMDLR 187 (423)
T ss_dssp EEEEECSSCEEEEEEETTTCCEEEEEEEEST
T ss_pred eEeccCcCcEEEEEEECCCCCEEEEEEEecc
Confidence 5799999999999985 46889999987543
No 197
>3zgw_A Maternal embryonic leucine zipper kinase; transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=92.35 E-value=0.009 Score=60.35 Aligned_cols=31 Identities=16% Similarity=0.344 Sum_probs=26.2
Q ss_pred cceeecccceeeehh-hhhhhhHHHHHHHhhH
Q psy3329 641 SFLTLGNFGLISVGV-IILSAMVYFSFYARHL 671 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~-l~~g~~vaV~~~~~~~ 671 (694)
..||+|+||.||+|+ ..+|..||||+.....
T Consensus 16 ~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~ 47 (347)
T 3zgw_A 16 ETIGTGGFAKVKLACHILTGEMVAIKIMDKNT 47 (347)
T ss_dssp EEEEECSSCEEEEEEETTTCCEEEEEEEESSC
T ss_pred EEEEcCCCeEEEEEEECCCCCEEEEEEEEccc
Confidence 789999999999998 4678899999875543
No 198
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=92.35 E-value=0.013 Score=60.47 Aligned_cols=32 Identities=9% Similarity=0.094 Sum_probs=26.9
Q ss_pred cceeecccceeeehhhhh-hhhHHHHHHHhhHh
Q psy3329 641 SFLTLGNFGLISVGVIIL-SAMVYFSFYARHLY 672 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~-g~~vaV~~~~~~~~ 672 (694)
..||+|+||.||+|+... |..||||+......
T Consensus 15 ~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~ 47 (396)
T 4eut_A 15 DILGQGATANVFRGRHKKTGDLFAIKVFNNISF 47 (396)
T ss_dssp EEEEECSSEEEEEEEETTTCCEEEEEEECGGGG
T ss_pred EEEEcCCCeEEEEEEECCCCcEEEEEEeccccc
Confidence 689999999999998765 78999999765443
No 199
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=92.19 E-value=0.0094 Score=60.38 Aligned_cols=28 Identities=11% Similarity=-0.083 Sum_probs=26.0
Q ss_pred cceeecccceeeehhhhhhhhHHHHHHH
Q psy3329 641 SFLTLGNFGLISVGVIILSAMVYFSFYA 668 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~ 668 (694)
..||.|+||.||+|.-++|..||||+..
T Consensus 101 ~~IG~Gk~a~VY~a~d~~G~~vAvKi~r 128 (397)
T 4gyi_A 101 SRIGVGKESDIMIVADEKGKQKVLKIHR 128 (397)
T ss_dssp EEEEECSSEEEEEEECTTCCEEEEEEEC
T ss_pred CEeeeCCceEEEEEECCCCCEEEEEEEe
Confidence 6899999999999999999999999864
No 200
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Probab=92.10 E-value=0.01 Score=59.35 Aligned_cols=31 Identities=16% Similarity=0.142 Sum_probs=25.4
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHhhH
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHL 671 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~ 671 (694)
..||+|+||.||+|+-. +|..||||+.....
T Consensus 13 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~ 44 (323)
T 3tki_A 13 QTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKR 44 (323)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEEEEECC-
T ss_pred eEEecCCCEEEEEEEECCCCcEEEEEEEEccc
Confidence 68999999999999865 77899999875443
No 201
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=92.05 E-value=0.011 Score=59.54 Aligned_cols=30 Identities=10% Similarity=0.017 Sum_probs=25.7
Q ss_pred cceeecccceeeehhh-hhhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVI-ILSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+. .+|..||||+....
T Consensus 57 ~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~ 87 (340)
T 3an0_A 57 MELGRGAYGVVEKMRHVPSGQIMAVKRIRAT 87 (340)
T ss_dssp EEEEECSSEEEEEEEETTTTEEEEEEEECSC
T ss_pred eEecccCCEEEEEEEEcCCCCEEEEEEeccc
Confidence 6799999999999984 68889999987543
No 202
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=91.99 E-value=0.02 Score=58.12 Aligned_cols=44 Identities=14% Similarity=-0.021 Sum_probs=32.5
Q ss_pred cCCCccccccccCcc----cceeecccceeeehhh-hhhhhHHHHHHHh
Q psy3329 626 RAAPSYINMEKLNSK----SFLTLGNFGLISVGVI-ILSAMVYFSFYAR 669 (694)
Q Consensus 626 ~~~~s~~~l~~~~~~----~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~ 669 (694)
...+++.+...+.+. +.||+|+||.||+|+. .+|..||||+...
T Consensus 22 ~~~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~ 70 (360)
T 3llt_A 22 IVHFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRN 70 (360)
T ss_dssp GGSCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECS
T ss_pred ceeeeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEecc
Confidence 334455555555444 7899999999999987 4677999998753
No 203
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=91.95 E-value=0.012 Score=58.80 Aligned_cols=30 Identities=10% Similarity=0.065 Sum_probs=26.0
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+.. +|..||||+....
T Consensus 51 ~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~ 81 (321)
T 2c30_A 51 VKIGEGSTGIVCLAREKHSGRQVAVKMMDLR 81 (321)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEEEEETT
T ss_pred EEeccCCCeEEEEEEECCCCcEEEEEEEecc
Confidence 58999999999999976 7899999987543
No 204
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=91.95 E-value=0.013 Score=59.16 Aligned_cols=38 Identities=16% Similarity=0.056 Sum_probs=28.5
Q ss_pred cceeecccceeeehhhh------hhhhHHHHHHHhhHhHhhhhh
Q psy3329 641 SFLTLGNFGLISVGVII------LSAMVYFSFYARHLYRTKQQR 678 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~------~g~~vaV~~~~~~~~~~~~~~ 678 (694)
+.||+|+||.||+|+.. +|..||||+.........+++
T Consensus 53 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~ 96 (343)
T 1luf_A 53 RDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQAD 96 (343)
T ss_dssp EEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHH
T ss_pred eeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHH
Confidence 68999999999999985 347899999865544333333
No 205
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=91.76 E-value=0.019 Score=55.97 Aligned_cols=29 Identities=7% Similarity=-0.120 Sum_probs=26.3
Q ss_pred cceeecccceeeehhhhhhhhHHHHHHHh
Q psy3329 641 SFLTLGNFGLISVGVIILSAMVYFSFYAR 669 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~ 669 (694)
+.||.|+||.||+|+..+|..||||+...
T Consensus 96 ~~iG~G~~g~Vy~~~~~~g~~valK~~~~ 124 (282)
T 1zar_A 96 KLMGEGKESAVFNCYSEKFGECVVKFHKV 124 (282)
T ss_dssp EEEEECSSEEEEEEEETTTEEEEEEEECC
T ss_pred CEeccCCCceEEEEEeCCCCEEEEEEEEC
Confidence 78999999999999998899999998753
No 206
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=91.70 E-value=0.013 Score=58.32 Aligned_cols=31 Identities=23% Similarity=0.152 Sum_probs=24.8
Q ss_pred cceeecccceeeehhhh-----hhhhHHHHHHHhhH
Q psy3329 641 SFLTLGNFGLISVGVII-----LSAMVYFSFYARHL 671 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-----~g~~vaV~~~~~~~ 671 (694)
..||+|+||.||+|.+. +|..||||+.....
T Consensus 37 ~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~ 72 (318)
T 3lxp_A 37 RDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADA 72 (318)
T ss_dssp EEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTC
T ss_pred heecCCCCeEEEEEEEccCCCCCCcEEEEEEecccc
Confidence 57999999999887643 67789999987543
No 207
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=91.66 E-value=0.0083 Score=58.99 Aligned_cols=31 Identities=16% Similarity=0.210 Sum_probs=24.5
Q ss_pred cceeecccceeeehhhh----hhhhHHHHHHHhhH
Q psy3329 641 SFLTLGNFGLISVGVII----LSAMVYFSFYARHL 671 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~----~g~~vaV~~~~~~~ 671 (694)
..||+|+||.||+|+-. .|..||||+.....
T Consensus 30 ~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~ 64 (304)
T 3ubd_A 30 KVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKAT 64 (304)
T ss_dssp EEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEE
T ss_pred EEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHH
Confidence 68999999999999642 35689999876543
No 208
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A
Probab=91.66 E-value=0.017 Score=56.59 Aligned_cols=34 Identities=9% Similarity=0.017 Sum_probs=26.0
Q ss_pred cceeecccceeeehhh-hhhhhHHHHHHHhhHhHh
Q psy3329 641 SFLTLGNFGLISVGVI-ILSAMVYFSFYARHLYRT 674 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~~~~~ 674 (694)
..||+|+||.||+|+- .+|..||||+........
T Consensus 13 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~ 47 (290)
T 3fme_A 13 MELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQ 47 (290)
T ss_dssp EEEEECSSEEEEEEEETTTTEEEEEEEEC---CHH
T ss_pred HhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcH
Confidence 6899999999999985 578899999876554333
No 209
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=91.64 E-value=0.014 Score=59.66 Aligned_cols=31 Identities=16% Similarity=0.130 Sum_probs=25.0
Q ss_pred cceeecccceeeehhh--------hhhhhHHHHHHHhhH
Q psy3329 641 SFLTLGNFGLISVGVI--------ILSAMVYFSFYARHL 671 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l--------~~g~~vaV~~~~~~~ 671 (694)
..||+|+||.||+|+. .+|..||||+.....
T Consensus 87 ~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~ 125 (370)
T 2psq_A 87 KPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDA 125 (370)
T ss_dssp EEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTC
T ss_pred eEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCc
Confidence 6899999999999975 345679999886543
No 210
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=91.57 E-value=0.014 Score=57.80 Aligned_cols=31 Identities=16% Similarity=0.135 Sum_probs=25.6
Q ss_pred cceeecccceeeehhh------hhhhhHHHHHHHhhH
Q psy3329 641 SFLTLGNFGLISVGVI------ILSAMVYFSFYARHL 671 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l------~~g~~vaV~~~~~~~ 671 (694)
..||+|+||.||+|+. .+|..||||+.....
T Consensus 29 ~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~ 65 (313)
T 1t46_A 29 KTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSA 65 (313)
T ss_dssp EEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC
T ss_pred HhhCccCCcceEEEEEeeccccchhhhhHHHhcCcch
Confidence 6899999999999974 456799999876543
No 211
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=91.54 E-value=0.018 Score=57.86 Aligned_cols=30 Identities=17% Similarity=0.164 Sum_probs=23.5
Q ss_pred cceeecccceeeehhh--------hhhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVI--------ILSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l--------~~g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+. .+|..||||+....
T Consensus 41 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~ 78 (334)
T 2pvf_A 41 KPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDD 78 (334)
T ss_dssp EEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTT
T ss_pred eEEeecCceeEEEeEeccccccccccceEEEEeeeccC
Confidence 6899999999999986 35678999987654
No 212
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}
Probab=91.53 E-value=0.013 Score=58.47 Aligned_cols=34 Identities=12% Similarity=0.021 Sum_probs=25.0
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHhhHhHh
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHLYRT 674 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~~~~ 674 (694)
..||+|+||.||+|+.. +|..||||+........
T Consensus 8 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~ 42 (324)
T 3mtl_A 8 DKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEG 42 (324)
T ss_dssp EEEEECSSEEEEEEEETTTCCEEEEEEECC-----
T ss_pred EEEcCCCCEEEEEEEECCCCcEEEEEEEecccccc
Confidence 57999999999999875 67799999876544433
No 213
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=91.50 E-value=0.014 Score=57.45 Aligned_cols=31 Identities=16% Similarity=0.034 Sum_probs=24.6
Q ss_pred cceeecccceeeehh-----hhhhhhHHHHHHHhhH
Q psy3329 641 SFLTLGNFGLISVGV-----IILSAMVYFSFYARHL 671 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~-----l~~g~~vaV~~~~~~~ 671 (694)
..||+|+||.||+|+ ..+|..||||+.....
T Consensus 27 ~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~ 62 (302)
T 4e5w_A 27 RDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPES 62 (302)
T ss_dssp EEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC---
T ss_pred hccCCCCceEEEEEEEccccCccCeEEEEEEecccc
Confidence 689999999999998 4577899999876554
No 214
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=91.46 E-value=0.018 Score=58.84 Aligned_cols=32 Identities=6% Similarity=-0.074 Sum_probs=27.0
Q ss_pred ccceeecccceeeehhh-hhhhhHHHHHHHhhH
Q psy3329 640 KSFLTLGNFGLISVGVI-ILSAMVYFSFYARHL 671 (694)
Q Consensus 640 ~~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~~ 671 (694)
...||+|+||.||+|+. .+|..||||+.....
T Consensus 67 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~ 99 (371)
T 3q60_A 67 VEPLRVGDRSVVFLVRDVERLEDFALKVFTMGA 99 (371)
T ss_dssp EEEEEECSSEEEEEEEETTTTEEEEEEEEECCS
T ss_pred eeeccCCCCEEEEEEEECCCCceeEEEEEEecc
Confidence 37899999999999994 578899999877643
No 215
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=91.43 E-value=0.013 Score=57.39 Aligned_cols=30 Identities=27% Similarity=0.249 Sum_probs=24.7
Q ss_pred cceeecccceeeehhhh---hhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVII---LSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~---~g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+.. .|..||||+....
T Consensus 16 ~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~ 48 (287)
T 1u59_A 16 IELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQG 48 (287)
T ss_dssp EEEECCTTEEEEEEEEC---CCEEEEEEEECSS
T ss_pred ccccccCceeEEEeEeccCCCcceEEEEecCCc
Confidence 47999999999999864 5668999988654
No 216
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=91.42 E-value=0.016 Score=57.43 Aligned_cols=30 Identities=10% Similarity=0.067 Sum_probs=25.9
Q ss_pred cceeecccceeeehhhhhhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVIILSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+-.+|..||||+....
T Consensus 27 ~~lG~G~~g~V~~~~~~~~~~vavK~~~~~ 56 (311)
T 3niz_A 27 EKVGEGTYGVVYKAKDSQGRIVALKRIRLD 56 (311)
T ss_dssp EEEEECSSCEEEEEEETTSCEEEEEEEC--
T ss_pred hhccCCCCeEEEEEEECCCCEEEEEEEecc
Confidence 689999999999999989999999987543
No 217
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=91.15 E-value=0.018 Score=57.08 Aligned_cols=31 Identities=16% Similarity=0.098 Sum_probs=25.5
Q ss_pred cceeecccceeeehh------hhhhhhHHHHHHHhhH
Q psy3329 641 SFLTLGNFGLISVGV------IILSAMVYFSFYARHL 671 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~------l~~g~~vaV~~~~~~~ 671 (694)
+.||+|+||.||+|+ -.+|..||||+.....
T Consensus 33 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~ 69 (316)
T 2xir_A 33 KPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA 69 (316)
T ss_dssp EEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC
T ss_pred eEEcCCCceeEEEEEEecCCccccceEEEEEecccCC
Confidence 689999999999996 3567799999876543
No 218
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=91.12 E-value=0.017 Score=59.20 Aligned_cols=31 Identities=16% Similarity=0.123 Sum_probs=24.7
Q ss_pred cceeecccceeeehhh--------hhhhhHHHHHHHhhH
Q psy3329 641 SFLTLGNFGLISVGVI--------ILSAMVYFSFYARHL 671 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l--------~~g~~vaV~~~~~~~ 671 (694)
..||+|+||.||+|+. ..+..||||+.....
T Consensus 75 ~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~ 113 (382)
T 3tt0_A 75 KPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDA 113 (382)
T ss_dssp EEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTC
T ss_pred eEEecCCCeEEEEEEEccccccccccceEEEEEeecccc
Confidence 6899999999999985 344579999876543
No 219
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=91.04 E-value=0.016 Score=59.08 Aligned_cols=29 Identities=21% Similarity=0.167 Sum_probs=23.8
Q ss_pred cceeecccceeeehhhh------hhhhHHHHHHHh
Q psy3329 641 SFLTLGNFGLISVGVII------LSAMVYFSFYAR 669 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~------~g~~vaV~~~~~ 669 (694)
..||+|+||.||+|++. +|..||||+...
T Consensus 77 ~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~ 111 (367)
T 3l9p_A 77 RGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPE 111 (367)
T ss_dssp EECCCCSSSCEEEEEECC-----CCEEEEEEECCS
T ss_pred eEeeeCCCEEEEEEEEccCCCCCcceeEEEEeccc
Confidence 67999999999999953 345899998754
No 220
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=91.02 E-value=0.027 Score=56.45 Aligned_cols=29 Identities=14% Similarity=0.206 Sum_probs=25.2
Q ss_pred cceeecccceeeehhhhhhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVIILSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+.. |..||||+....
T Consensus 43 ~~lg~G~~g~V~~~~~~-~~~vavK~~~~~ 71 (337)
T 3mdy_A 43 KQIGKGRYGEVWMGKWR-GEKVAVKVFFTT 71 (337)
T ss_dssp EEEEEETTEEEEEEEET-TEEEEEEEEEGG
T ss_pred eEeecCCCeEEEEEEEC-CceEEEEEEecc
Confidence 78999999999999985 889999987543
No 221
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=90.99 E-value=0.026 Score=58.83 Aligned_cols=31 Identities=13% Similarity=0.198 Sum_probs=26.5
Q ss_pred cceeecccceeeehhhhh-hhhHHHHHHHhhH
Q psy3329 641 SFLTLGNFGLISVGVIIL-SAMVYFSFYARHL 671 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~-g~~vaV~~~~~~~ 671 (694)
++||+|+||.||+|+..+ |..||||+.....
T Consensus 80 ~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~ 111 (437)
T 4aw2_A 80 KVIGRGAFGEVAVVKLKNADKVFAMKILNKWE 111 (437)
T ss_dssp EEEEECSSEEEEEEEETTTTEEEEEEEEEHHH
T ss_pred EEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHH
Confidence 789999999999999876 5699999876543
No 222
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=90.98 E-value=0.018 Score=57.59 Aligned_cols=30 Identities=10% Similarity=0.058 Sum_probs=25.8
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+.. +|..||||+....
T Consensus 28 ~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~ 58 (327)
T 3aln_A 28 GEIGRGAYGSVNKMVHKPSGQIMAVKRIRST 58 (327)
T ss_dssp CEEEECSSEEEEEEEETTTTEEEEEEEEECC
T ss_pred heeccCCCEEEEEEEEcCCCCEEEEEEeecc
Confidence 68999999999999984 6889999987554
No 223
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=90.96 E-value=0.022 Score=56.94 Aligned_cols=30 Identities=20% Similarity=0.140 Sum_probs=21.4
Q ss_pred cceeecccceeeehhhh------hhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVII------LSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~------~g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+.. +|..||||+....
T Consensus 36 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~ 71 (327)
T 2yfx_A 36 RGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEV 71 (327)
T ss_dssp EECC--CSSCEEEEEC--------CCEEEEEECCSS
T ss_pred EEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccc
Confidence 78999999999999853 4558999987533
No 224
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=90.92 E-value=0.022 Score=56.07 Aligned_cols=32 Identities=16% Similarity=0.207 Sum_probs=23.3
Q ss_pred cceeecccceeeehhhhhhh----hHHHHHHHhhHh
Q psy3329 641 SFLTLGNFGLISVGVIILSA----MVYFSFYARHLY 672 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~g~----~vaV~~~~~~~~ 672 (694)
..||+|+||.||+|+..+.. .||||+......
T Consensus 31 ~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~ 66 (298)
T 3f66_A 31 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITD 66 (298)
T ss_dssp EEEEEETTEEEEEEEEC-----CEEEEEEEETTCCS
T ss_pred ceeeecCCceEEEEEEecCCCceeEEEEEecccCCC
Confidence 68999999999999975443 578887665433
No 225
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=90.80 E-value=0.029 Score=55.80 Aligned_cols=30 Identities=23% Similarity=0.253 Sum_probs=25.1
Q ss_pred cceeecccceeeehhhh------hhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVII------LSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~------~g~~vaV~~~~~~ 670 (694)
+.||+|+||.||+|+.. .|..||||+....
T Consensus 31 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~ 66 (322)
T 1p4o_A 31 RELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEA 66 (322)
T ss_dssp EEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTT
T ss_pred eEeccCCceEEEeeeecCccCCCCceEEEEEecccc
Confidence 78999999999999875 3678999987544
No 226
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=90.70 E-value=0.013 Score=58.09 Aligned_cols=29 Identities=3% Similarity=-0.101 Sum_probs=26.2
Q ss_pred cceeecccceeeehhhhhhhhHHHHHHHh
Q psy3329 641 SFLTLGNFGLISVGVIILSAMVYFSFYAR 669 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~ 669 (694)
..||+|+||.||+|+..+|..||||+...
T Consensus 34 ~~lg~G~~g~Vy~~~~~~~~~vavK~~~~ 62 (313)
T 3cek_A 34 KQIGSGGSSKVFQVLNEKKQIYAIKYVNL 62 (313)
T ss_dssp EEEECCSSEEEEEEECTTCCEEEEEEEEC
T ss_pred EEecCCCCEEEEEEEcCCCcEEEEEEecc
Confidence 78999999999999999999999998743
No 227
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...
Probab=90.65 E-value=0.023 Score=55.03 Aligned_cols=31 Identities=16% Similarity=0.142 Sum_probs=25.7
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHhhH
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHL 671 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~ 671 (694)
..||+|+||.||+|+-. +|..||||+.....
T Consensus 13 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~ 44 (276)
T 2yex_A 13 QTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKR 44 (276)
T ss_dssp EEEEECSSSEEEEEEETTTCCEEEEEEEEGGG
T ss_pred EEeecCCCcEEEEEEECCCCcEEEEEEeeecc
Confidence 57999999999999875 67899999875443
No 228
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Probab=90.65 E-value=0.018 Score=58.15 Aligned_cols=29 Identities=3% Similarity=-0.101 Sum_probs=26.2
Q ss_pred cceeecccceeeehhhhhhhhHHHHHHHh
Q psy3329 641 SFLTLGNFGLISVGVIILSAMVYFSFYAR 669 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~ 669 (694)
..||+|+||.||+|+..+|..||||+...
T Consensus 15 ~~lG~G~~g~Vy~~~~~~~~~vavK~~~~ 43 (343)
T 3dbq_A 15 KQIGSGGSSKVFQVLNEKKQIYAIKYVNL 43 (343)
T ss_dssp EEESCCSSEEEEEEECTTSCEEEEEEEEC
T ss_pred EEEecCCCeEEEEEEeCCCCEEEEEEeec
Confidence 68999999999999999999999998653
No 229
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=90.64 E-value=0.031 Score=56.13 Aligned_cols=31 Identities=16% Similarity=0.167 Sum_probs=26.4
Q ss_pred cceeecccceeeehhhhhhhhHHHHHHHhhHh
Q psy3329 641 SFLTLGNFGLISVGVIILSAMVYFSFYARHLY 672 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~~~ 672 (694)
..||+|+||.||+|+. .|..||||+......
T Consensus 48 ~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~ 78 (342)
T 1b6c_B 48 ESIGKGRFGEVWRGKW-RGEEVAVKIFSSREE 78 (342)
T ss_dssp EEEEEETTEEEEEEEE-TTEEEEEEEECGGGH
T ss_pred eeecCCCCcEEEEEEE-cCccEEEEEeCchhH
Confidence 6899999999999998 588999999765443
No 230
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=90.58 E-value=0.025 Score=56.54 Aligned_cols=31 Identities=13% Similarity=0.081 Sum_probs=26.0
Q ss_pred cceeecccceeeehh-hhhhhhHHHHHHHhhH
Q psy3329 641 SFLTLGNFGLISVGV-IILSAMVYFSFYARHL 671 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~-l~~g~~vaV~~~~~~~ 671 (694)
+.||+|+||.||+|+ ..+|..||||+.....
T Consensus 42 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~ 73 (330)
T 3nsz_A 42 RKLGRGKYSEVFEAINITNNEKVVVKILKPVK 73 (330)
T ss_dssp EEEEECSSEEEEEEEETTTCCEEEEEEECSCC
T ss_pred EEecccCCeEEEEEEECCCCcEEEEEEecccc
Confidence 789999999999996 4678899999876433
No 231
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=90.57 E-value=0.027 Score=56.59 Aligned_cols=30 Identities=13% Similarity=0.028 Sum_probs=25.5
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~ 670 (694)
++||+|+||.||+|+-. +|..||||+....
T Consensus 35 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~ 65 (336)
T 3fhr_A 35 QVLGLGVNGKVLECFHRRTGQKCALKLLYDS 65 (336)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEEEEESS
T ss_pred eeeeeCCCeEEEEEEECCCCCEEEEEEecCc
Confidence 57999999999999876 6789999987543
No 232
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=90.52 E-value=0.021 Score=56.27 Aligned_cols=31 Identities=16% Similarity=0.160 Sum_probs=25.6
Q ss_pred cceeecccceeeehhh-hhhhhHHHHHHHhhH
Q psy3329 641 SFLTLGNFGLISVGVI-ILSAMVYFSFYARHL 671 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~~ 671 (694)
..||+|+||.||+|+- .+|..||||+.....
T Consensus 28 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~ 59 (303)
T 3a7i_A 28 EKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEE 59 (303)
T ss_dssp EEEEECSSSEEEEEEETTTCCEEEEEEEETTT
T ss_pred hhhcccCCeEEEEEEECCCCcEEEEEEecccc
Confidence 6799999999999974 467899999875443
No 233
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=90.50 E-value=0.016 Score=57.86 Aligned_cols=31 Identities=19% Similarity=0.305 Sum_probs=26.2
Q ss_pred cceeecccceeeehh-hhhhhhHHHHHHHhhH
Q psy3329 641 SFLTLGNFGLISVGV-IILSAMVYFSFYARHL 671 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~-l~~g~~vaV~~~~~~~ 671 (694)
..||+|+||.||+|+ ..+|..||||+.....
T Consensus 49 ~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~ 80 (320)
T 3a99_A 49 PLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDR 80 (320)
T ss_dssp EECSSSSSCEEEEEEETTTTEEEEEEEEEGGG
T ss_pred EEEeeCCCeEEEEEEECCCCcEEEEEEEeccc
Confidence 689999999999997 4678899999876554
No 234
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=90.48 E-value=0.021 Score=56.04 Aligned_cols=33 Identities=21% Similarity=0.241 Sum_probs=25.3
Q ss_pred ccceeecccceeeehhhhhhh----hHHHHHHHhhHh
Q psy3329 640 KSFLTLGNFGLISVGVIILSA----MVYFSFYARHLY 672 (694)
Q Consensus 640 ~~~iG~G~fG~VYkg~l~~g~----~vaV~~~~~~~~ 672 (694)
.+.||+|+||.||+|+..+.. .||||+......
T Consensus 26 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~ 62 (298)
T 3pls_A 26 DRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITE 62 (298)
T ss_dssp EEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCS
T ss_pred CceeccCCCceEEEEEEecCCCceeeeeeeecccccc
Confidence 378999999999999864433 689998765443
No 235
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=90.44 E-value=0.02 Score=58.94 Aligned_cols=29 Identities=3% Similarity=-0.101 Sum_probs=26.1
Q ss_pred cceeecccceeeehhhhhhhhHHHHHHHh
Q psy3329 641 SFLTLGNFGLISVGVIILSAMVYFSFYAR 669 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~ 669 (694)
..||+|+||.||+|+..+|..||||+...
T Consensus 62 ~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~ 90 (390)
T 2zmd_A 62 KQIGSGGSSKVFQVLNEKKQIYAIKYVNL 90 (390)
T ss_dssp EEEECCSSEEEEEEECTTCCEEEEEEEEC
T ss_pred EEEccCCCeEEEEEEcCCCCEEEEEEEec
Confidence 68999999999999998899999998754
No 236
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=90.40 E-value=0.032 Score=55.74 Aligned_cols=30 Identities=20% Similarity=0.187 Sum_probs=19.1
Q ss_pred cceeecccceeeehhh-hhhhhH----HHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVI-ILSAMV----YFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l-~~g~~v----aV~~~~~~ 670 (694)
+.||+|+||.||+|+. .+|..| |||.....
T Consensus 21 ~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~ 55 (327)
T 3poz_A 21 KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREA 55 (327)
T ss_dssp EEEEEETTEEEEEEEECC----CCEEEEEEEC---
T ss_pred eEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccc
Confidence 7899999999999984 466654 67665433
No 237
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=90.39 E-value=0.023 Score=61.82 Aligned_cols=33 Identities=12% Similarity=0.128 Sum_probs=27.2
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHhhHhH
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHLYR 673 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~~~ 673 (694)
.+||+|+||.||+|+-. .|..||||+.......
T Consensus 195 k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~ 228 (689)
T 3v5w_A 195 RIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIK 228 (689)
T ss_dssp EEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHH
T ss_pred EEEecccCeEEEEEEECCCCCEEEEEEEeHHHcc
Confidence 78999999999999864 5789999988655443
No 238
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=90.34 E-value=0.027 Score=57.28 Aligned_cols=30 Identities=13% Similarity=0.241 Sum_probs=24.9
Q ss_pred cceeecccceeeehhh-hhhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVI-ILSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+- .+|..||||+....
T Consensus 33 ~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~ 63 (364)
T 3qyz_A 33 SYIGEGAYGMVCSAYDNLNKVRVAIKKISPF 63 (364)
T ss_dssp EEEEECSSEEEEEEEETTTTEEEEEEEECCT
T ss_pred EEeecCCCeEEEEEEECCCCeEEEEEEeccc
Confidence 6899999999999974 46778999987643
No 239
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A
Probab=90.33 E-value=0.023 Score=57.03 Aligned_cols=29 Identities=17% Similarity=0.094 Sum_probs=25.9
Q ss_pred cceeecccceeeehhhhhhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVIILSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+- .|..||||+....
T Consensus 26 ~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~ 54 (336)
T 2vuw_A 26 EKIGEGVFGEVFQTIA-DHTPVAIKIIAIE 54 (336)
T ss_dssp EEEEEETTEEEEEEEE-TTEEEEEEEEEES
T ss_pred eeecccCceEEEEEEe-CCceEEEEEEecC
Confidence 6899999999999987 7889999998654
No 240
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=90.26 E-value=0.024 Score=57.37 Aligned_cols=29 Identities=7% Similarity=0.053 Sum_probs=23.2
Q ss_pred cceeecccceeeehhh----hhhhhHHHHHHHh
Q psy3329 641 SFLTLGNFGLISVGVI----ILSAMVYFSFYAR 669 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l----~~g~~vaV~~~~~ 669 (694)
..||+|+||+||+|+- ..+..||||+...
T Consensus 27 ~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~ 59 (361)
T 4f9c_A 27 DKIGEGTFSSVYLATAQLQVGPEEKIALKHLIP 59 (361)
T ss_dssp EEEEECSSEEEEEEEEEBTTSCEEEEEEEEECT
T ss_pred EEEecccCcEEEEEEEcccCCCCCEEEEEEEcc
Confidence 6899999999999963 3456899997543
No 241
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*
Probab=90.23 E-value=0.021 Score=55.15 Aligned_cols=29 Identities=10% Similarity=-0.011 Sum_probs=25.3
Q ss_pred cceeecccceeeehhhhhhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVIILSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+.. |..||||+....
T Consensus 16 ~~lg~G~~g~V~~~~~~-~~~~avK~~~~~ 44 (271)
T 3kmu_A 16 TKLNENHSGELWKGRWQ-GNDIVVKVLKVR 44 (271)
T ss_dssp EEEEEETTEEEEEEEET-TEEEEEEEECCT
T ss_pred HHhcCCCcceEEEEEEC-CeeEEEEEeccc
Confidence 68999999999999984 888999987654
No 242
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=90.19 E-value=0.023 Score=56.30 Aligned_cols=31 Identities=16% Similarity=0.142 Sum_probs=25.1
Q ss_pred cceeecccceeeehhh------hhhhhHHHHHHHhhH
Q psy3329 641 SFLTLGNFGLISVGVI------ILSAMVYFSFYARHL 671 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l------~~g~~vaV~~~~~~~ 671 (694)
..||+|+||.||+|+. .+|..||||+.....
T Consensus 29 ~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~ 65 (314)
T 2ivs_A 29 KTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENA 65 (314)
T ss_dssp EEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTC
T ss_pred eeecccCCeeEEEEEEeccCcccCcceEEEEeccCCC
Confidence 6799999999999975 345789999876543
No 243
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=90.19 E-value=0.026 Score=54.97 Aligned_cols=30 Identities=17% Similarity=0.257 Sum_probs=24.0
Q ss_pred cceeecccceeeehhhhh----hhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVIIL----SAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~----g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+... +..||||+....
T Consensus 21 ~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~ 54 (281)
T 1mp8_A 21 RCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNC 54 (281)
T ss_dssp EEEEECSSSEEEEEEECCC--CCEEEEEEECTTT
T ss_pred eEeeecCCeeEEEEEEecCCCCceEEEEEecccc
Confidence 689999999999998753 346999886553
No 244
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=89.99 E-value=0.022 Score=57.31 Aligned_cols=31 Identities=19% Similarity=0.196 Sum_probs=24.5
Q ss_pred cceeecccceeeehhh------hhhhhHHHHHHHhhH
Q psy3329 641 SFLTLGNFGLISVGVI------ILSAMVYFSFYARHL 671 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l------~~g~~vaV~~~~~~~ 671 (694)
..||+|+||.||+|+. .+|..||||+.....
T Consensus 51 ~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~ 87 (344)
T 1rjb_A 51 KVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKA 87 (344)
T ss_dssp EEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC--
T ss_pred eeecCCCCceeEEeeeeccccCCcceEEEEEeccccc
Confidence 7899999999999986 355689999876443
No 245
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=89.96 E-value=0.022 Score=58.20 Aligned_cols=30 Identities=17% Similarity=0.260 Sum_probs=23.9
Q ss_pred cceeecccceeeehhhhhh----hhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVIILS----AMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~g----~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+..+. ..||||+....
T Consensus 95 ~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~ 128 (373)
T 3c1x_A 95 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRI 128 (373)
T ss_dssp EEEECCSSSEEEEEEEEETTTEEEEEEEEECCSC
T ss_pred cEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCC
Confidence 6899999999999998543 26899887543
No 246
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=89.85 E-value=0.026 Score=54.52 Aligned_cols=30 Identities=20% Similarity=0.281 Sum_probs=26.7
Q ss_pred cceeecccceeeehhhhhhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVIILSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+..++..||||+....
T Consensus 16 ~~lg~G~~g~V~~~~~~~~~~vavK~~~~~ 45 (269)
T 4hcu_A 16 QEIGSGQFGLVHLGYWLNKDKVAIKTIREG 45 (269)
T ss_dssp EEEEECSSCEEEEEEETTTEEEEEEEECTT
T ss_pred heecCCCccEEEEEEecCCCeEEEEEeccc
Confidence 689999999999999988889999987644
No 247
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*
Probab=89.84 E-value=0.025 Score=54.52 Aligned_cols=31 Identities=19% Similarity=0.164 Sum_probs=27.0
Q ss_pred cceeecccceeeehhhhhhhhHHHHHHHhhH
Q psy3329 641 SFLTLGNFGLISVGVIILSAMVYFSFYARHL 671 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~~ 671 (694)
..||+|+||.||+|+..++..||||+.....
T Consensus 14 ~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~ 44 (268)
T 3sxs_A 14 KELGSGQFGVVKLGKWKGQYDVAVKMIKEGS 44 (268)
T ss_dssp EEEEEETTEEEEEEEETTTEEEEEEEECBTT
T ss_pred eeeccCCCceEEEEEecCceeEEEEEeccCC
Confidence 6899999999999999988889999876543
No 248
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=89.83 E-value=0.029 Score=54.63 Aligned_cols=31 Identities=23% Similarity=0.188 Sum_probs=24.8
Q ss_pred cceeecccceeeehhhhhhh----hHHHHHHHhhH
Q psy3329 641 SFLTLGNFGLISVGVIILSA----MVYFSFYARHL 671 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~g~----~vaV~~~~~~~ 671 (694)
..||+|+||.||+|+..++. .||||+.....
T Consensus 18 ~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~ 52 (281)
T 3cc6_A 18 RILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDC 52 (281)
T ss_dssp EEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTS
T ss_pred EEEEecCCeeEEEeEEcCCCCCcceEEEEeccccc
Confidence 68999999999999875432 59999876543
No 249
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=89.81 E-value=0.031 Score=56.45 Aligned_cols=29 Identities=17% Similarity=0.174 Sum_probs=25.1
Q ss_pred cceeecccceeeehh-hhhhhhHHHHHHHh
Q psy3329 641 SFLTLGNFGLISVGV-IILSAMVYFSFYAR 669 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~-l~~g~~vaV~~~~~ 669 (694)
+.||+|+||.||+|+ ..+|..||||+...
T Consensus 60 ~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~ 89 (348)
T 1u5q_A 60 REIGHGSFGAVYFARDVRNSEVVAIKKMSY 89 (348)
T ss_dssp EEEEECSSEEEEEEEETTTTEEEEEEEEES
T ss_pred eEEccCCCEEEEEEEEccCCeEEEEEEEcc
Confidence 679999999999998 46888999998753
No 250
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=89.75 E-value=0.037 Score=57.79 Aligned_cols=33 Identities=12% Similarity=0.047 Sum_probs=26.6
Q ss_pred ccceeecccceeeehhhhhhhhHHHHHHHhhHh
Q psy3329 640 KSFLTLGNFGLISVGVIILSAMVYFSFYARHLY 672 (694)
Q Consensus 640 ~~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~~~ 672 (694)
..+||+|+||+||++...+|..||||+......
T Consensus 20 ~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~~~ 52 (434)
T 2rio_A 20 EKILGYGSSGTVVFQGSFQGRPVAVKRMLIDFC 52 (434)
T ss_dssp EEEEEECSTTCEEEEEESSSSEEEEEEEEGGGH
T ss_pred cCeEeeCCCeEEEEEEEECCeEEEEEEEcHHHH
Confidence 378999999999777677899999998755433
No 251
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=89.73 E-value=0.033 Score=53.45 Aligned_cols=27 Identities=7% Similarity=-0.000 Sum_probs=24.7
Q ss_pred cceeecccceeeehhh-hhhhh--HHHHHH
Q psy3329 641 SFLTLGNFGLISVGVI-ILSAM--VYFSFY 667 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l-~~g~~--vaV~~~ 667 (694)
..||.|+||.||+|+. .+|.. ||||+.
T Consensus 53 ~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~ 82 (258)
T 1zth_A 53 GVISTGKEANVFYADGVFDGKPVAMAVKIY 82 (258)
T ss_dssp EEEEECSSEEEEEEEEEETTEEEEEEEEEE
T ss_pred CEEeecceEEEEEEEEcCCCcEeeEEEEEE
Confidence 6899999999999998 78988 999974
No 252
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=89.69 E-value=0.027 Score=57.22 Aligned_cols=30 Identities=17% Similarity=-0.027 Sum_probs=25.5
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+.. +|..||||+....
T Consensus 39 ~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~ 69 (360)
T 3eqc_A 39 SELGAGNGGVVFKVSHKPSGLVMARKLIHLE 69 (360)
T ss_dssp EEEEECSSCEEEEEEETTTCCEEEEEEEECC
T ss_pred eeecCCCCeEEEEEEECCCCcEEEEEEeccc
Confidence 68999999999999876 5779999987644
No 253
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=89.68 E-value=0.023 Score=58.19 Aligned_cols=28 Identities=4% Similarity=-0.301 Sum_probs=25.2
Q ss_pred cceeecccceeeehhh-hhhhhHHHHHHH
Q psy3329 641 SFLTLGNFGLISVGVI-ILSAMVYFSFYA 668 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~ 668 (694)
..||+|+||.||+|+. .+|..||||+..
T Consensus 79 ~~lG~G~~g~V~~a~~~~~~~~vavK~~~ 107 (377)
T 3byv_A 79 TVLGQEDPYAYLEATDQETGESFEVHVPY 107 (377)
T ss_dssp EEEEEETTEEEEEEEC-CCCCEEEEEEEE
T ss_pred ceeecCCCEEEEEEEECCCCcEEEEEEEe
Confidence 7899999999999996 568899999975
No 254
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=89.60 E-value=0.032 Score=54.91 Aligned_cols=30 Identities=10% Similarity=0.071 Sum_probs=25.1
Q ss_pred cceeecccceeeehh-hhhhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGV-IILSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~-l~~g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+ ..+|..||||+....
T Consensus 26 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~ 56 (297)
T 3fxz_A 26 EKIGQGASGTVYTAMDVATGQEVAIRQMNLQ 56 (297)
T ss_dssp EEEEEETTEEEEEEEBTTTCCEEEEEEEEGG
T ss_pred eeeccCCCeEEEEEEECCCCcEEEEEEeecc
Confidence 579999999999997 467889999986543
No 255
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=89.58 E-value=0.037 Score=56.66 Aligned_cols=29 Identities=17% Similarity=0.184 Sum_probs=24.7
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHh
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYAR 669 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~ 669 (694)
..||+|+||.||+|+-. +|..||||+...
T Consensus 60 ~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~ 89 (382)
T 2vx3_A 60 SLIGKGSFGQVVKAYDRVEQEWVAIKIIKN 89 (382)
T ss_dssp EEEEEETTEEEEEEEETTTTEEEEEEEECS
T ss_pred EEEeecCCEEEEEEEEcCCCcEEEEEEEec
Confidence 68999999999999754 677999998754
No 256
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=89.56 E-value=0.022 Score=62.38 Aligned_cols=29 Identities=28% Similarity=0.279 Sum_probs=24.6
Q ss_pred ceeecccceeeehhhh---hhhhHHHHHHHhh
Q psy3329 642 FLTLGNFGLISVGVII---LSAMVYFSFYARH 670 (694)
Q Consensus 642 ~iG~G~fG~VYkg~l~---~g~~vaV~~~~~~ 670 (694)
.||+|+||.||+|+.. +|..||||+....
T Consensus 343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~ 374 (613)
T 2ozo_A 343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQG 374 (613)
T ss_dssp EEEECSSSEEEEEEEECSSCEEEEEEEECCCC
T ss_pred EEecCCCcEEEEEEEecCCCcEEEEEEEcCCC
Confidence 6999999999999875 5668999998654
No 257
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=89.56 E-value=0.024 Score=56.18 Aligned_cols=29 Identities=14% Similarity=0.172 Sum_probs=25.0
Q ss_pred cceeecccceeeehhhhhhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVIILSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+. .|+.||||+....
T Consensus 43 ~~lG~G~~g~V~~~~~-~~~~vavK~~~~~ 71 (309)
T 3p86_A 43 EKIGAGSFGTVHRAEW-HGSDVAVKILMEQ 71 (309)
T ss_dssp EEEEECSSEEEEEEEE-TTEEEEEEEECCC
T ss_pred eEeecCCCeEEEEEEE-CCCcEEEEEecCC
Confidence 6899999999999987 6888999987544
No 258
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Probab=89.54 E-value=0.029 Score=56.65 Aligned_cols=28 Identities=18% Similarity=0.268 Sum_probs=24.5
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHH
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYA 668 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~ 668 (694)
..||+|+||.||+|+-. +|..||||+..
T Consensus 17 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~ 45 (353)
T 2b9h_A 17 SLLGEGAYGVVCSATHKPTGEIVAIKKIE 45 (353)
T ss_dssp EEEEECSSEEEEEEEETTTTEEEEEEEEC
T ss_pred eEEcCCCCeEEEEEEECCCCcEEEEEeec
Confidence 68999999999999865 68899999874
No 259
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=89.51 E-value=0.028 Score=54.87 Aligned_cols=33 Identities=12% Similarity=-0.018 Sum_probs=26.4
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHhhHhH
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHLYR 673 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~~~ 673 (694)
+.||+|+||.||+|+-. +|..||||+......+
T Consensus 28 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~ 61 (285)
T 3is5_A 28 RKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQ 61 (285)
T ss_dssp EEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCC
T ss_pred ceeccCCCeEEEEEEEccCCceEEEEEeeccccc
Confidence 68999999999999864 5678999987665443
No 260
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Probab=89.43 E-value=0.031 Score=55.03 Aligned_cols=38 Identities=8% Similarity=0.019 Sum_probs=19.7
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHhhHhHhhhhh
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHLYRTKQQR 678 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~~~~~~~~ 678 (694)
..||+|+||.||+|+-. +|..||||+......+...++
T Consensus 21 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~ 59 (303)
T 2vwi_A 21 EVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDE 59 (303)
T ss_dssp EECC---CCCEEEEEC----CEEEEECCC----------
T ss_pred heeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHH
Confidence 68999999999999854 678999998765544433333
No 261
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=89.42 E-value=0.032 Score=55.24 Aligned_cols=31 Identities=23% Similarity=0.258 Sum_probs=25.8
Q ss_pred cceeecccceeeehhh-hhhhhHHHHHHHhhH
Q psy3329 641 SFLTLGNFGLISVGVI-ILSAMVYFSFYARHL 671 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~~ 671 (694)
..||+|+||.||+|+- .+|..||||+.....
T Consensus 37 ~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~ 68 (312)
T 2iwi_A 37 PLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNR 68 (312)
T ss_dssp EEEEEETTEEEEEEECTTTCCEEEEEECCSTT
T ss_pred eEEEcCCCEEEEEEEEccCCeEEEEEEEeccc
Confidence 7899999999999965 567799999876543
No 262
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=89.37 E-value=0.033 Score=54.40 Aligned_cols=30 Identities=10% Similarity=-0.150 Sum_probs=26.0
Q ss_pred cceeecccceeeehhhhh-hhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVIIL-SAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~-g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+-.. |..||||+....
T Consensus 37 ~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~ 67 (286)
T 3uqc_A 37 IFHGGVPPLQFWQALDTALDRQVALTFVDPQ 67 (286)
T ss_dssp EEEEBSTTCEEEEEEETTTTEEEEEEESCTT
T ss_pred EEEcccCCeEEEEEEecCCCceEEEEEECcc
Confidence 689999999999999754 789999988654
No 263
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=89.37 E-value=0.038 Score=55.21 Aligned_cols=30 Identities=13% Similarity=0.209 Sum_probs=25.9
Q ss_pred cceeecccceeeehhh-hhhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVI-ILSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+- .+|..||||+....
T Consensus 21 ~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~ 51 (328)
T 3fe3_A 21 KTIGKGNFAKVKLARHILTGREVAIKIIDKT 51 (328)
T ss_dssp EEEEECSSEEEEEEEETTTCCEEEEEEEEGG
T ss_pred EEEeeCCCEEEEEEEECCCCCEEEEEEEEhh
Confidence 6899999999999985 68889999987544
No 264
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Probab=89.33 E-value=0.025 Score=55.31 Aligned_cols=29 Identities=7% Similarity=0.029 Sum_probs=25.4
Q ss_pred cceeecccceeeehhhhhhhhHHHHHHHh
Q psy3329 641 SFLTLGNFGLISVGVIILSAMVYFSFYAR 669 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~ 669 (694)
..||+|+||.||+|+-.+|..||||+...
T Consensus 8 ~~lg~G~~g~V~~~~~~~~~~~aiK~~~~ 36 (288)
T 1ob3_A 8 EKIGEGTYGVVYKAQNNYGETFALKKIRL 36 (288)
T ss_dssp EEEEEETTEEEEEEEETTSCEEEEEEECC
T ss_pred hhcccCCCEEEEEEEcCCCCEEEEEEEec
Confidence 47999999999999988888999997644
No 265
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=89.27 E-value=0.026 Score=54.93 Aligned_cols=30 Identities=20% Similarity=0.176 Sum_probs=23.9
Q ss_pred cceeecccceeeehhhhhhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVIILSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+..++..||||+....
T Consensus 30 ~~lg~G~~g~V~~~~~~~~~~vavK~~~~~ 59 (283)
T 3gen_A 30 KELGTGQFGVVKYGKWRGQYDVAIKMIKEG 59 (283)
T ss_dssp EECC---CEEEEEEEETTTEEEEEEEECTT
T ss_pred hhcCCCCCceEEEEEEcCCCeEEEEEecCC
Confidence 689999999999999998889999987654
No 266
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=89.18 E-value=0.038 Score=55.65 Aligned_cols=31 Identities=13% Similarity=0.252 Sum_probs=26.3
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHhhH
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHL 671 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~ 671 (694)
.+||+|+||.||+|+.. +|..||||+.....
T Consensus 23 ~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~ 54 (345)
T 1xjd_A 23 KMLGKGSFGKVFLAEFKKTNQFFAIKALKKDV 54 (345)
T ss_dssp EEEEECSSSEEEEEEETTTTEEEEEEEEEHHH
T ss_pred EEEeeCCCeEEEEEEECCCCCEEEEEEEEhHH
Confidence 68999999999999975 57799999876543
No 267
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=89.16 E-value=0.036 Score=55.57 Aligned_cols=32 Identities=25% Similarity=0.378 Sum_probs=26.9
Q ss_pred cceeecccceeeehhh-hhhhhHHHHHHHhhHh
Q psy3329 641 SFLTLGNFGLISVGVI-ILSAMVYFSFYARHLY 672 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~~~ 672 (694)
..||+|+||.||+|+- ..|..||||+......
T Consensus 15 ~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~ 47 (336)
T 3h4j_B 15 ETLGEGSFGKVKLATHYKTQQKVALKFISRQLL 47 (336)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEEEEEHHHH
T ss_pred EEEecCCCeEEEEEEECCCCCEEEEEEEehHHc
Confidence 6899999999999995 6778999998765543
No 268
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Probab=89.14 E-value=0.034 Score=55.11 Aligned_cols=30 Identities=10% Similarity=0.100 Sum_probs=26.0
Q ss_pred cceeecccceeeehh-hhhhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGV-IILSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~-l~~g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+ ..+|..||||+....
T Consensus 18 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~ 48 (311)
T 3ork_A 18 EILGFGGMSEVHLARDLRDHRDVAVKVLRAD 48 (311)
T ss_dssp EEEEECSSEEEEEEEETTTTEEEEEEEECTT
T ss_pred EEEccCCCEEEEEEEECCCCceEEEEEeCcc
Confidence 689999999999998 477889999987654
No 269
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=89.11 E-value=0.037 Score=53.40 Aligned_cols=30 Identities=17% Similarity=0.255 Sum_probs=23.8
Q ss_pred ccceeecccceeeehhhhhhhhHHHHHHHhh
Q psy3329 640 KSFLTLGNFGLISVGVIILSAMVYFSFYARH 670 (694)
Q Consensus 640 ~~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~ 670 (694)
...||+|+||.||+|+.. |..||||+....
T Consensus 12 ~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~ 41 (271)
T 3dtc_A 12 EEIIGIGGFGKVYRAFWI-GDEVAVKAARHD 41 (271)
T ss_dssp EEEEEEETTEEEEEEEET-TEEEEEEEC---
T ss_pred eeeeccCCCeEEEEEEEc-CCeEEEEEEecC
Confidence 368999999999999974 788999987543
No 270
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=89.11 E-value=0.038 Score=54.11 Aligned_cols=33 Identities=12% Similarity=0.267 Sum_probs=26.3
Q ss_pred Ccccceeecccceeeehh-hhhhhhHHHHHHHhh
Q psy3329 638 NSKSFLTLGNFGLISVGV-IILSAMVYFSFYARH 670 (694)
Q Consensus 638 ~~~~~iG~G~fG~VYkg~-l~~g~~vaV~~~~~~ 670 (694)
....+||+|+||.||+|+ ..+|..||||+....
T Consensus 25 ~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~ 58 (295)
T 2clq_A 25 GDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPER 58 (295)
T ss_dssp SSBCEEEECSSSEEEEEEETTTCCEEEEEEEECC
T ss_pred CCcEEEeecCcEEEEEEEECCCCeEEEEEEccCC
Confidence 344699999999999998 456779999976543
No 271
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=89.09 E-value=0.031 Score=54.26 Aligned_cols=30 Identities=20% Similarity=0.147 Sum_probs=26.2
Q ss_pred cceeecccceeeehhhhhhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVIILSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+..++..||||+....
T Consensus 19 ~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~ 48 (279)
T 1qpc_A 19 ERLGAGQFGEVWMGYYNGHTKVAVKSLKQG 48 (279)
T ss_dssp EEEEEETTEEEEEEEETTTEEEEEEEECTT
T ss_pred eeecCCCCeEEEEEEEcCCcEEEEEEecCC
Confidence 689999999999999988888999987543
No 272
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=89.08 E-value=0.03 Score=55.03 Aligned_cols=30 Identities=7% Similarity=0.182 Sum_probs=23.2
Q ss_pred cceeecccceeeehhh-hhhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVI-ILSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+- .+|..||||+....
T Consensus 19 ~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~ 49 (298)
T 2zv2_A 19 DEIGKGSYGVVKLAYNENDNTYYAMKVLSKK 49 (298)
T ss_dssp EEEEC--CCEEEEEEETTTTEEEEEEEEECC
T ss_pred eEEeecCCEEEEEEEECCCCcEEEEEEeehh
Confidence 6899999999999974 46789999987543
No 273
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=89.05 E-value=0.052 Score=56.12 Aligned_cols=30 Identities=10% Similarity=0.168 Sum_probs=26.1
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~ 670 (694)
++||+|+||.||+|+.. +|..||||+....
T Consensus 67 ~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~ 97 (412)
T 2vd5_A 67 KVIGRGAFSEVAVVKMKQTGQVYAMKIMNKW 97 (412)
T ss_dssp EEEEECSSCEEEEEEETTTCCEEEEEEEEHH
T ss_pred EEEeeCCCeEEEEEEECCCCCEEEEEEEeHH
Confidence 78999999999999985 6889999987653
No 274
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=88.85 E-value=0.033 Score=58.62 Aligned_cols=29 Identities=17% Similarity=0.112 Sum_probs=26.5
Q ss_pred cceeecccceeeehhhhhhhhHHHHHHHh
Q psy3329 641 SFLTLGNFGLISVGVIILSAMVYFSFYAR 669 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~ 669 (694)
+.||+|+||.||+|+..++..||||+...
T Consensus 194 ~~lG~G~fg~V~~~~~~~~~~vavK~~~~ 222 (454)
T 1qcf_A 194 KKLGAGQFGEVWMATYNKHTKVAVKTMKP 222 (454)
T ss_dssp EEEECCSSEEEEEEEETTTEEEEEEEECT
T ss_pred EEcccCCceEEEEEEECCccEEEEEEecC
Confidence 78999999999999998888999998764
No 275
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=88.84 E-value=0.048 Score=55.07 Aligned_cols=32 Identities=6% Similarity=0.076 Sum_probs=26.2
Q ss_pred cceeecccceeeehhh-hhhhhHHHHHHHhhHh
Q psy3329 641 SFLTLGNFGLISVGVI-ILSAMVYFSFYARHLY 672 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~~~ 672 (694)
..||+|+||.||+|+- .+|..||||+......
T Consensus 30 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~ 62 (351)
T 3c0i_A 30 EVIGKGPFSVVRRCINRETGQQFAVKIVDVAKF 62 (351)
T ss_dssp EEEEECSSEEEEEEEETTTCCEEEEEEEEHHHH
T ss_pred eEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhc
Confidence 6899999999999975 4678999998765443
No 276
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=88.83 E-value=0.027 Score=57.25 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=26.1
Q ss_pred cceeecccceeeehhhhhhhhHHHHHHHh
Q psy3329 641 SFLTLGNFGLISVGVIILSAMVYFSFYAR 669 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~ 669 (694)
+.||+|+||.||+|+-.+|..||||+...
T Consensus 28 ~~lg~G~~g~V~~~~~~~~~~vavK~~~~ 56 (362)
T 3pg1_A 28 RFISSGSYGAVCAGVDSEGIPVAIKRVFN 56 (362)
T ss_dssp EEEEEETTEEEEEEECTTSCEEEEEEECE
T ss_pred EEeccCCCEEEEEEECCCCCeEEEEeccc
Confidence 78999999999999988899999997644
No 277
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=88.83 E-value=0.041 Score=55.09 Aligned_cols=31 Identities=19% Similarity=0.272 Sum_probs=24.2
Q ss_pred ccceeecccceeeehhhhhh-----hhHHHHHHHhh
Q psy3329 640 KSFLTLGNFGLISVGVIILS-----AMVYFSFYARH 670 (694)
Q Consensus 640 ~~~iG~G~fG~VYkg~l~~g-----~~vaV~~~~~~ 670 (694)
.+.||+|+||.||+|+.... ..||||+....
T Consensus 49 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~ 84 (333)
T 1mqb_A 49 QKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAG 84 (333)
T ss_dssp EEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTT
T ss_pred ccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCC
Confidence 37899999999999987643 25999987654
No 278
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=88.80 E-value=0.034 Score=56.78 Aligned_cols=33 Identities=12% Similarity=0.027 Sum_probs=21.9
Q ss_pred cccceeecccceeeehhh-hhhhhHHHHHHHhhH
Q psy3329 639 SKSFLTLGNFGLISVGVI-ILSAMVYFSFYARHL 671 (694)
Q Consensus 639 ~~~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~~ 671 (694)
..++||+|+||.||+|+. .+|..||||+.....
T Consensus 93 ~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~ 126 (373)
T 2x4f_A 93 KTEILGGGRFGQVHKCEETATGLKLAAKIIKTRG 126 (373)
T ss_dssp EEEECC-----CEEEEEETTTCCEEEEEEEECCS
T ss_pred cceEEecCcCEEEEEEEEcCCCcEEEEEEEcccc
Confidence 346899999999999985 568899999876543
No 279
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=88.71 E-value=0.048 Score=56.86 Aligned_cols=30 Identities=13% Similarity=0.192 Sum_probs=25.0
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~ 670 (694)
+.||+|+||.||+|+-. +|..||||+....
T Consensus 103 ~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~ 133 (429)
T 3kvw_A 103 KVIGKGSFGQVVKAYDHKVHQHVALKMVRNE 133 (429)
T ss_dssp EEEEESSSEEEEEEEETTTTEEEEEEEECSC
T ss_pred EEcccCccEEEEEEEECCCCcEEEEEEECCc
Confidence 68999999999999654 4779999987543
No 280
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}
Probab=88.70 E-value=0.049 Score=52.80 Aligned_cols=31 Identities=13% Similarity=0.099 Sum_probs=26.1
Q ss_pred cceeecccceeeehhh-hhhhhHHHHHHHhhH
Q psy3329 641 SFLTLGNFGLISVGVI-ILSAMVYFSFYARHL 671 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~~ 671 (694)
..||+|+||.||+|+- .+|..||||+.....
T Consensus 17 ~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~ 48 (278)
T 3cok_A 17 NLLGKGSFAGVYRAESIHTGLEVAIKMIDKKA 48 (278)
T ss_dssp EEEEECSSEEEEEEEETTTCCEEEEEEEEHHH
T ss_pred eeecCCCceEEEEEEEccCCceEEEEEeehhh
Confidence 6899999999999985 578899999875543
No 281
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=88.64 E-value=0.03 Score=55.55 Aligned_cols=31 Identities=10% Similarity=-0.013 Sum_probs=20.4
Q ss_pred ccceeecccceeeehhhh-hhhhHHHHHHHhh
Q psy3329 640 KSFLTLGNFGLISVGVII-LSAMVYFSFYARH 670 (694)
Q Consensus 640 ~~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~ 670 (694)
-..||+|+||.||+|+.. +|..||||+....
T Consensus 30 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~ 61 (318)
T 2dyl_A 30 LGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRS 61 (318)
T ss_dssp EEEC------CEEEEEETTTCCEEEEEEEETT
T ss_pred cceeeecCCeeEEEEEEecCCeEEEEEEeccc
Confidence 368999999999999885 6889999987654
No 282
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=88.54 E-value=0.038 Score=55.67 Aligned_cols=32 Identities=19% Similarity=0.205 Sum_probs=27.9
Q ss_pred cceeecccceeeehhhhhhhhHHHHHHHhhHhH
Q psy3329 641 SFLTLGNFGLISVGVIILSAMVYFSFYARHLYR 673 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~~~~ 673 (694)
..||+|+||.||+|+. +|..||||+.......
T Consensus 37 ~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~ 68 (348)
T 2pml_X 37 RTLNQGKFNKIILCEK-DNKFYALKKYEKSLLE 68 (348)
T ss_dssp EEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHS
T ss_pred EEEcCCCCeEEEEEEc-CCceEEEEEeeccccc
Confidence 6899999999999999 8999999988766543
No 283
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=88.51 E-value=0.039 Score=55.76 Aligned_cols=30 Identities=13% Similarity=0.268 Sum_probs=25.6
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~ 670 (694)
.+||+|+||.||+|+.. +|..||||+....
T Consensus 29 ~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~ 59 (353)
T 3txo_A 29 RVLGKGSFGKVMLARVKETGDLYAVKVLKKD 59 (353)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEEEEEHH
T ss_pred EEEeeCCCEEEEEEEEcCCCCEEEEEEEEHH
Confidence 68999999999999864 5789999987654
No 284
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=88.51 E-value=0.054 Score=56.81 Aligned_cols=31 Identities=13% Similarity=0.199 Sum_probs=26.1
Q ss_pred cceeecccceeeehhh-hhhhhHHHHHHHhhH
Q psy3329 641 SFLTLGNFGLISVGVI-ILSAMVYFSFYARHL 671 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~~ 671 (694)
+.||+|+||.||+|+- .+|..||||+.....
T Consensus 154 ~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~ 185 (446)
T 4ejn_A 154 KLLGKGTFGKVILVKEKATGRYYAMKILKKEV 185 (446)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEEEEEHHH
T ss_pred EEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhh
Confidence 6899999999999984 567899999886554
No 285
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=88.32 E-value=0.037 Score=56.28 Aligned_cols=31 Identities=19% Similarity=0.095 Sum_probs=24.3
Q ss_pred cceeecccceeeehhhhhh------hhHHHHHHHhhH
Q psy3329 641 SFLTLGNFGLISVGVIILS------AMVYFSFYARHL 671 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~g------~~vaV~~~~~~~ 671 (694)
..||+|+||.||+|+..++ ..||||+.....
T Consensus 41 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~ 77 (364)
T 3op5_A 41 LPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDN 77 (364)
T ss_dssp EECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTC
T ss_pred EEEecCCCeEEEEeeecCccccccccceEEEEeeccc
Confidence 6899999999999987664 689999865443
No 286
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=88.29 E-value=0.049 Score=55.39 Aligned_cols=29 Identities=7% Similarity=-0.057 Sum_probs=25.7
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHh
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYAR 669 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~ 669 (694)
..||.|+||.||+|+.. +|..||||+...
T Consensus 100 ~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~ 129 (365)
T 2y7j_A 100 DVIGRGVSSVVRRCVHRATGHEFAVKIMEV 129 (365)
T ss_dssp EEEEECSSEEEEEEEETTTCCEEEEEEEET
T ss_pred eEEecCCCEEEEEEEECCCCcEEEEEEEEc
Confidence 78999999999999985 789999998654
No 287
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...
Probab=88.20 E-value=0.04 Score=54.00 Aligned_cols=29 Identities=21% Similarity=0.196 Sum_probs=24.5
Q ss_pred cceeecccceeeehhh-----hhhhhHHHHHHHh
Q psy3329 641 SFLTLGNFGLISVGVI-----ILSAMVYFSFYAR 669 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l-----~~g~~vaV~~~~~ 669 (694)
..||+|+||.||+|++ .+|..||||+...
T Consensus 16 ~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~ 49 (295)
T 3ugc_A 16 QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQH 49 (295)
T ss_dssp EEEEECSSEEEEEEEECTTCSSCCEEEEEEEESC
T ss_pred heeeccCCEEEEEEEEecccCCCCcEEEEEEccc
Confidence 6899999999999984 3677999998654
No 288
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Probab=88.19 E-value=0.049 Score=54.65 Aligned_cols=31 Identities=13% Similarity=0.179 Sum_probs=25.9
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHhhH
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHL 671 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~ 671 (694)
..||+|+||.||+|+-. +|..||||+.....
T Consensus 11 ~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~ 42 (337)
T 1o6l_A 11 KLLGKGTFGKVILVREKATGRYYAMKILRKEV 42 (337)
T ss_dssp EEEEECSSEEEEEEEETTTCCEEEEEEEEHHH
T ss_pred EEEecCCCeEEEEEEECCCCCEEEEEEEeHHH
Confidence 68999999999999865 57899999876543
No 289
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=88.03 E-value=0.041 Score=54.95 Aligned_cols=30 Identities=10% Similarity=0.094 Sum_probs=25.7
Q ss_pred cceeecccceeeehhh----hhhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVI----ILSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l----~~g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+. .+|..||||+....
T Consensus 23 ~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~ 56 (327)
T 3a62_A 23 RVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKA 56 (327)
T ss_dssp EEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC
T ss_pred EEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHH
Confidence 6899999999999987 57889999987643
No 290
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=88.00 E-value=0.034 Score=53.88 Aligned_cols=30 Identities=13% Similarity=0.204 Sum_probs=16.3
Q ss_pred cceeecccceeeehh-hhhhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGV-IILSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~-l~~g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+ ..+|..||||+....
T Consensus 19 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~ 49 (275)
T 2eue_A 19 KTLGEGSFAKVKLAYHTTTGQKVALKIINKK 49 (275)
T ss_dssp C---------EEEEECTTTCCEEEEEEECSC
T ss_pred EEEEcCCCEEEEEEEECCCCCEEEEEEEEhh
Confidence 689999999999997 457789999987543
No 291
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=87.92 E-value=0.041 Score=55.64 Aligned_cols=31 Identities=13% Similarity=0.188 Sum_probs=26.3
Q ss_pred cceeecccceeeehhhhh-hhhHHHHHHHhhH
Q psy3329 641 SFLTLGNFGLISVGVIIL-SAMVYFSFYARHL 671 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~-g~~vaV~~~~~~~ 671 (694)
.+||+|+||.||+|+-.. |..||||+.....
T Consensus 26 ~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~ 57 (353)
T 2i0e_A 26 MVLGKGSFGKVMLSERKGTDELYAVKILKKDV 57 (353)
T ss_dssp EEEEEETTEEEEEEEETTEEEEEEEEEEEHHH
T ss_pred EEEeeCCCEEEEEEEECCCCCEEEEEEEEHHH
Confidence 689999999999999864 6799999876654
No 292
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=87.79 E-value=0.054 Score=55.91 Aligned_cols=31 Identities=10% Similarity=0.136 Sum_probs=26.0
Q ss_pred cceeecccceeeehhhhh-hhhHHHHHHHhhH
Q psy3329 641 SFLTLGNFGLISVGVIIL-SAMVYFSFYARHL 671 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~-g~~vaV~~~~~~~ 671 (694)
..||+|+||.||+|+... |.+||||+.....
T Consensus 75 ~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~ 106 (410)
T 3v8s_A 75 KVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFE 106 (410)
T ss_dssp EEEEECSSEEEEEEEETTTCCEEEEEEEEHHH
T ss_pred EEEEcCCCEEEEEEEECCCCcEEEEEEEehhh
Confidence 789999999999998764 6799999876543
No 293
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=87.78 E-value=0.043 Score=57.00 Aligned_cols=29 Identities=14% Similarity=0.230 Sum_probs=24.9
Q ss_pred ccceeecccceeeehhhh-hhhhHHHHHHH
Q psy3329 640 KSFLTLGNFGLISVGVII-LSAMVYFSFYA 668 (694)
Q Consensus 640 ~~~iG~G~fG~VYkg~l~-~g~~vaV~~~~ 668 (694)
.++||+|+||.||+|+.. +|..||||...
T Consensus 59 ~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~ 88 (420)
T 1j1b_A 59 TKVIGNGSFGVVYQAKLCDSGELVAIKKVL 88 (420)
T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEEE
T ss_pred eeEEeeCCCEEEEEEEECCCCcEEEEEEec
Confidence 368999999999999985 58899999764
No 294
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=87.77 E-value=0.063 Score=55.14 Aligned_cols=29 Identities=17% Similarity=0.143 Sum_probs=24.8
Q ss_pred cceeecccceeeehh-hhhhhhHHHHHHHh
Q psy3329 641 SFLTLGNFGLISVGV-IILSAMVYFSFYAR 669 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~-l~~g~~vaV~~~~~ 669 (694)
..||+|+||.||+|+ ..+|..||||+...
T Consensus 43 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~ 72 (397)
T 1wak_A 43 RKLGWGHFSTVWLSWDIQGKKFVAMKVVKS 72 (397)
T ss_dssp EEEEECSSEEEEEEEETTTTEEEEEEEECS
T ss_pred EEeeecCCeeEEEEEecCCCeEEEEEEEec
Confidence 679999999999997 45678999998754
No 295
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=87.77 E-value=0.034 Score=54.25 Aligned_cols=29 Identities=21% Similarity=0.272 Sum_probs=24.8
Q ss_pred cceeecccceeeehhh-hhhhhHHHHHHHh
Q psy3329 641 SFLTLGNFGLISVGVI-ILSAMVYFSFYAR 669 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~ 669 (694)
+.||+|+||.||+|+. .+|..||||+...
T Consensus 25 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~ 54 (287)
T 4f0f_A 25 KQIGKGGFGLVHKGRLVKDKSVVAIKSLIL 54 (287)
T ss_dssp EECCCCSSSCEEEEEETTTCCEEEEEECCC
T ss_pred hccccCCceeEEEEEEcCCceEEEEEEeec
Confidence 6899999999999987 4777999998743
No 296
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*
Probab=87.74 E-value=0.057 Score=54.36 Aligned_cols=30 Identities=3% Similarity=0.111 Sum_probs=25.6
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+.. +|..||||+....
T Consensus 15 ~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~ 45 (345)
T 3a8x_A 15 RVIGRGSYAKVLLVRLKKTDRIYAMKVVKKE 45 (345)
T ss_dssp EEEEECSSEEEEEEEETTTTEEEEEEEEEGG
T ss_pred EEEEecCCeEEEEEEECCCCCEEEEEEEEhH
Confidence 68999999999999875 4779999987654
No 297
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=87.74 E-value=0.043 Score=53.66 Aligned_cols=30 Identities=23% Similarity=0.297 Sum_probs=23.2
Q ss_pred cceeecccceeeehhhh---hhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVII---LSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~---~g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|... +|..||||+....
T Consensus 23 ~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~ 55 (291)
T 1xbb_A 23 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNE 55 (291)
T ss_dssp EEEEECSSEEEEEEEEECSSSEEEEEEEEEC--
T ss_pred CccccccCeeeEeeeecCCCceeeEEEEeeccc
Confidence 48999999999999653 4568999987654
No 298
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=87.71 E-value=0.051 Score=60.49 Aligned_cols=30 Identities=13% Similarity=0.114 Sum_probs=25.5
Q ss_pred cceeecccceeeehhhh--hhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVII--LSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~--~g~~vaV~~~~~~ 670 (694)
..||+||||.||+|+.. +|..||||+....
T Consensus 86 ~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~ 117 (681)
T 2pzi_A 86 GCIAHGGLGWIYLALDRNVNGRPVVLKGLVHS 117 (681)
T ss_dssp EEEEEETTEEEEEEEEGGGTTEEEEEEESCSS
T ss_pred EEEeeCCCeEEEEEEEcCCCCcEEEEEEeCcc
Confidence 68999999999999875 5789999987543
No 299
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=87.71 E-value=0.03 Score=56.69 Aligned_cols=29 Identities=10% Similarity=0.127 Sum_probs=25.3
Q ss_pred cceeecccceeeehhh----hhhhhHHHHHHHh
Q psy3329 641 SFLTLGNFGLISVGVI----ILSAMVYFSFYAR 669 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l----~~g~~vaV~~~~~ 669 (694)
+.||+|+||.||+|+. .+|..||||+...
T Consensus 60 ~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~ 92 (355)
T 1vzo_A 60 KVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKK 92 (355)
T ss_dssp EEEEETTTEEEEEEEECSSTTTTCEEEEEEESE
T ss_pred EEeccCCCEEEEEEEEcccCCCCeEEEEEEEeH
Confidence 7899999999999987 4788999998754
No 300
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=87.61 E-value=0.047 Score=54.39 Aligned_cols=40 Identities=8% Similarity=0.111 Sum_probs=29.7
Q ss_pred ccccccccCcc----cceeecccceeeehhh-hhhhhHHHHHHHh
Q psy3329 630 SYINMEKLNSK----SFLTLGNFGLISVGVI-ILSAMVYFSFYAR 669 (694)
Q Consensus 630 s~~~l~~~~~~----~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~ 669 (694)
.+.++....+. ..||+|+||.||+|+. .+|..||||+...
T Consensus 15 ~~~~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~ 59 (326)
T 2x7f_A 15 DLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDV 59 (326)
T ss_dssp -CCCCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC
T ss_pred cchhccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEec
Confidence 44444444433 7899999999999987 4778999998643
No 301
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=87.56 E-value=0.032 Score=55.67 Aligned_cols=28 Identities=25% Similarity=0.289 Sum_probs=21.4
Q ss_pred cceeecccceeeehhh-hhhhh----HHHHHHH
Q psy3329 641 SFLTLGNFGLISVGVI-ILSAM----VYFSFYA 668 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l-~~g~~----vaV~~~~ 668 (694)
..||+|+||.||+|+. .+|.. ||||+..
T Consensus 19 ~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~ 51 (325)
T 3kex_A 19 KVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIE 51 (325)
T ss_dssp EEEECCSSCEEEEEEECCTTCSCCEEEEEEEEC
T ss_pred eeeeecCCceEEEEEEcCCCceEEEEEEEEecc
Confidence 6899999999999985 45555 5666543
No 302
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*
Probab=87.53 E-value=0.029 Score=55.76 Aligned_cols=30 Identities=13% Similarity=0.072 Sum_probs=17.6
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+-. +|..||||+....
T Consensus 11 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~ 41 (317)
T 2pmi_A 11 EKLGNGTYATVYKGLNKTTGVYVALKEVKLD 41 (317)
T ss_dssp --------CEEEEEECSSSCCEEEEEEEECC
T ss_pred eEECCCCCEEEEEEEECCCCcEEEEEEeecc
Confidence 57999999999999764 5789999987543
No 303
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7
Probab=87.47 E-value=0.033 Score=56.20 Aligned_cols=31 Identities=16% Similarity=0.083 Sum_probs=24.1
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHhhH
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHL 671 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~ 671 (694)
..||+|+||.||+|+.. +|..||||+.....
T Consensus 16 ~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~ 47 (346)
T 1ua2_A 16 DFLGEGQFATVYKARDKNTNQIVAIKKIKLGH 47 (346)
T ss_dssp EEEEEETTEEEEEEECSSCCSEEEEEEC----
T ss_pred eEEeecCCEEEEEEEECCCCcEEEEEEEecCC
Confidence 68999999999999875 47899999876543
No 304
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=87.47 E-value=0.063 Score=53.38 Aligned_cols=30 Identities=17% Similarity=0.237 Sum_probs=21.2
Q ss_pred cceeecccceeeehhhhhhh----hHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVIILSA----MVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~g~----~vaV~~~~~~ 670 (694)
..||+|+||.||+|+..... .||||+....
T Consensus 29 ~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~ 62 (323)
T 3qup_A 29 RMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKAD 62 (323)
T ss_dssp EEEEEETTEEEEEEEC-------CEEEEEEC---
T ss_pred ceecccCCeEEEEEEEcccCCcceeEEEEEeccc
Confidence 68999999999999876554 6899987654
No 305
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=87.46 E-value=0.064 Score=56.56 Aligned_cols=32 Identities=25% Similarity=0.317 Sum_probs=27.0
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHhhHh
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHLY 672 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~~ 672 (694)
..||+|+||.||+|+-. +|..||||+......
T Consensus 22 ~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~ 54 (476)
T 2y94_A 22 DTLGVGTFGKVKVGKHELTGHKVAVKILNRQKI 54 (476)
T ss_dssp EEEECCSSSCEEEEEETTTCCEEEEEEEEHHHH
T ss_pred EEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhc
Confidence 68999999999999865 688999998866543
No 306
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=87.35 E-value=0.054 Score=54.17 Aligned_cols=27 Identities=11% Similarity=-0.004 Sum_probs=23.9
Q ss_pred cceeecccceeeehhh-hhhhhHHHHHH
Q psy3329 641 SFLTLGNFGLISVGVI-ILSAMVYFSFY 667 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~ 667 (694)
..||+|+||.||+|+- .+|..||||+.
T Consensus 34 ~~lg~G~~g~V~~~~~~~~~~~vavK~~ 61 (337)
T 3ll6_A 34 RVLAEGGFAFVYEAQDVGSGREYALKRL 61 (337)
T ss_dssp EEEECCSSEEEEEEEETTTCCEEEEEEE
T ss_pred EEEccCCceEEEEEEECCCCcEEEEEEe
Confidence 7899999999999994 57789999976
No 307
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}
Probab=87.21 E-value=0.051 Score=55.63 Aligned_cols=29 Identities=14% Similarity=0.084 Sum_probs=23.7
Q ss_pred cceeecccceeeehhh-hhhhhHHHHHHHh
Q psy3329 641 SFLTLGNFGLISVGVI-ILSAMVYFSFYAR 669 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~ 669 (694)
..||+|+||.||+|+- .+|..||||+...
T Consensus 13 ~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~ 42 (383)
T 3eb0_A 13 KTLGTGSFGIVCEVFDIESGKRFALKKVLQ 42 (383)
T ss_dssp EEEECC-CEEEEEEEETTTCCEEEEEEEEC
T ss_pred EEEEeccCEEEEEEEECCCCCEEEEEEEec
Confidence 6899999999999974 6788999997643
No 308
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=87.14 E-value=0.051 Score=54.85 Aligned_cols=30 Identities=10% Similarity=-0.090 Sum_probs=25.0
Q ss_pred cceeecccceeeehhhhh-hhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVIIL-SAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~-g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+... |..||||+....
T Consensus 59 ~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~ 89 (349)
T 2w4o_A 59 SELGRGATSIVYRCKQKGTQKPYALKVLKKT 89 (349)
T ss_dssp EEEEECSSEEEEEEEETTTCCEEEEEEEEC-
T ss_pred eEEeeCCCEEEEEEEECCCCcEEEEEEeccc
Confidence 689999999999999864 568999987643
No 309
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=87.14 E-value=0.051 Score=52.23 Aligned_cols=30 Identities=20% Similarity=0.281 Sum_probs=26.7
Q ss_pred cceeecccceeeehhhhhhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVIILSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+..++..||||+....
T Consensus 14 ~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~ 43 (267)
T 3t9t_A 14 QEIGSGQFGLVHLGYWLNKDKVAIKTIREG 43 (267)
T ss_dssp EEEEEETTEEEEEEEETTTEEEEEEEECTT
T ss_pred eEecCCCceeEEEEEecCCCeEEEEEcccc
Confidence 679999999999999988889999987654
No 310
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...
Probab=87.13 E-value=0.025 Score=55.02 Aligned_cols=30 Identities=13% Similarity=0.094 Sum_probs=25.3
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+.. +|..||||+....
T Consensus 11 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~ 41 (283)
T 3bhy_A 11 EELGSGQFAIVRKCRQKGTGKEYAAKFIKKR 41 (283)
T ss_dssp EEEEECSSEEEEEEEETTTCCEEEEEEEEBC
T ss_pred HhhcccCceEEEEEEEcCCCCeeehHHhhhc
Confidence 57999999999999886 5789999976543
No 311
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7
Probab=87.11 E-value=0.051 Score=53.98 Aligned_cols=31 Identities=13% Similarity=0.139 Sum_probs=26.2
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHhhH
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHL 671 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~ 671 (694)
..||+|+||.||+|+-. +|..||||+.....
T Consensus 12 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~ 43 (318)
T 1fot_A 12 RTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEI 43 (318)
T ss_dssp EEEEECSSCEEEEEEETTTCCEEEEEEEEHHH
T ss_pred EEEeeCCCEEEEEEEECCCCCEEEEEEEEHHH
Confidence 68999999999999875 67899999876543
No 312
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=87.06 E-value=0.044 Score=57.12 Aligned_cols=34 Identities=18% Similarity=0.062 Sum_probs=26.1
Q ss_pred ccceeecccceeeehhhhhhhhHHHHHHHhhHhH
Q psy3329 640 KSFLTLGNFGLISVGVIILSAMVYFSFYARHLYR 673 (694)
Q Consensus 640 ~~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~~~~ 673 (694)
..+||+|+||+||.....+|+.||||+.......
T Consensus 29 ~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~~ 62 (432)
T 3p23_A 29 KDVLGHGAEGTIVYRGMFDNRDVAVKRILPECFS 62 (432)
T ss_dssp EEEEEECGGGCEEEEEESSSSEEEEEEECTTTEE
T ss_pred CCeeecCcCEEEEEEEEeCCeEEEEEEECHHHHH
Confidence 4789999999966555668899999987654433
No 313
>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*
Probab=87.01 E-value=0.056 Score=52.53 Aligned_cols=30 Identities=10% Similarity=0.031 Sum_probs=25.9
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+.. +|..||||+....
T Consensus 17 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~ 47 (284)
T 2a19_B 17 ELIGSGGFGQVFKAKHRIDGKTYVIKRVKYN 47 (284)
T ss_dssp EEEECSSSCCEEEEEETTTCCEEEEEEEECC
T ss_pred eeeccCCceEEEEEEEcCCCeEEEEEEeccc
Confidence 68999999999999986 7889999987543
No 314
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=86.99 E-value=0.039 Score=54.72 Aligned_cols=30 Identities=13% Similarity=0.182 Sum_probs=25.0
Q ss_pred cceeecccceeeehh-hhhhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGV-IILSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~-l~~g~~vaV~~~~~~ 670 (694)
.+||+|+||.||+|+ ..+|..||||+....
T Consensus 19 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~ 49 (316)
T 2ac3_A 19 DVLGEGAHARVQTCINLITSQEYAVKIIEKQ 49 (316)
T ss_dssp CCCCCCSSEEEEEEECSSSCCEEEEEEEECC
T ss_pred ceecCCceEEEEEEEEcCCCcEEEEEEEeeC
Confidence 579999999999998 457889999987543
No 315
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=86.91 E-value=0.07 Score=53.33 Aligned_cols=29 Identities=17% Similarity=0.096 Sum_probs=24.7
Q ss_pred cceeecccceeeehhh--hhhhhHHHHHHHh
Q psy3329 641 SFLTLGNFGLISVGVI--ILSAMVYFSFYAR 669 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l--~~g~~vaV~~~~~ 669 (694)
..||+|+||.||+|+- .+|..||||+...
T Consensus 20 ~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~ 50 (339)
T 1z57_A 20 DTLGEGAFGKVVECIDHKAGGRHVAVKIVKN 50 (339)
T ss_dssp EEEEEETTEEEEEEEETTTTTEEEEEEEECS
T ss_pred EEEecCCCeEEEEEEecCCCCcEEEEEEEec
Confidence 6799999999999974 5788999998753
No 316
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=86.86 E-value=0.063 Score=54.69 Aligned_cols=31 Identities=10% Similarity=0.168 Sum_probs=26.1
Q ss_pred cceeecccceeeehhhhh-hhhHHHHHHHhhH
Q psy3329 641 SFLTLGNFGLISVGVIIL-SAMVYFSFYARHL 671 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~-g~~vaV~~~~~~~ 671 (694)
++||+|+||.||+|+... |..||||+.....
T Consensus 44 ~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~ 75 (373)
T 2r5t_A 44 KVIGKGSFGKVLLARHKAEEVFYAVKVLQKKA 75 (373)
T ss_dssp EEEECCTTCEEEEEEETTTCCEEEEEEEEGGG
T ss_pred EEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHH
Confidence 789999999999998764 5689999886554
No 317
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=86.86 E-value=0.054 Score=54.16 Aligned_cols=31 Identities=16% Similarity=0.138 Sum_probs=24.0
Q ss_pred cceeecccceeeehhhhh-h-----hhHHHHHHHhhH
Q psy3329 641 SFLTLGNFGLISVGVIIL-S-----AMVYFSFYARHL 671 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~-g-----~~vaV~~~~~~~ 671 (694)
..||+|+||.||+|+... | ..||||+.....
T Consensus 52 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~ 88 (333)
T 2i1m_A 52 KTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTA 88 (333)
T ss_dssp EEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTC
T ss_pred eEeccCCCcceEEEEecCCCcccchhHHHHHhccccc
Confidence 789999999999998643 2 368998876543
No 318
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=86.84 E-value=0.066 Score=52.17 Aligned_cols=30 Identities=23% Similarity=0.163 Sum_probs=25.3
Q ss_pred cceeecccceeeehhhhh-hhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVIIL-SAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~-g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+... |..||||+....
T Consensus 19 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~ 49 (288)
T 3kfa_A 19 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKED 49 (288)
T ss_dssp EESGGGTTCSEEEEEEGGGTEEEEEEEECSC
T ss_pred eecCCCCceeEEEeEecCCCEEEEEEecCcC
Confidence 689999999999999876 568999987543
No 319
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=86.81 E-value=0.039 Score=56.15 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=21.0
Q ss_pred cceeecccceeeehh-hhhhhhHHHHHHHh
Q psy3329 641 SFLTLGNFGLISVGV-IILSAMVYFSFYAR 669 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~-l~~g~~vaV~~~~~ 669 (694)
..||+|+||.||+|+ ..+|..||||+...
T Consensus 35 ~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~ 64 (367)
T 2fst_X 35 SPVGSGAYGSVCAAFDTKTGLRVAVKKLSR 64 (367)
T ss_dssp EECC----CCEEEEEETTTTEEEEEEECSS
T ss_pred eEEeecCCeEEEEEEECCCCCEEEEEEeCc
Confidence 689999999999997 56788999998754
No 320
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=86.75 E-value=0.051 Score=53.88 Aligned_cols=29 Identities=21% Similarity=-0.004 Sum_probs=19.8
Q ss_pred cceeecccceeeehhhhh-hhhHHHHHHHh
Q psy3329 641 SFLTLGNFGLISVGVIIL-SAMVYFSFYAR 669 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~-g~~vaV~~~~~ 669 (694)
..||+|+||.||+|+-.. |..||||+...
T Consensus 17 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~ 46 (320)
T 2i6l_A 17 KPLGCGGNGLVFSAVDNDCDKRVAIKKIVL 46 (320)
T ss_dssp EECC-----CEEEEEETTTTEEEEEEEEEC
T ss_pred EEeccCCCeEEEEEEECCCCeEEEEEEEec
Confidence 679999999999999875 78999997643
No 321
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Probab=86.74 E-value=0.028 Score=57.05 Aligned_cols=32 Identities=13% Similarity=0.039 Sum_probs=26.3
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHhhHh
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHLY 672 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~~ 672 (694)
..||+|+||.||+|+-. +|..||||+......
T Consensus 18 ~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~ 50 (361)
T 2yab_A 18 EELGSGQFAIVKKCREKSTGLEYAAKFIKKRQS 50 (361)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEEEEEBCSS
T ss_pred eEEeeCcCEEEEEEEECCCCCEEEEEEEEcccc
Confidence 68999999999999865 578999998765443
No 322
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=86.63 E-value=0.058 Score=58.96 Aligned_cols=30 Identities=17% Similarity=0.112 Sum_probs=25.4
Q ss_pred cceeecccceeeehhh-hhhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVI-ILSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~ 670 (694)
..||.|+||.||+|+. .+|..||||+....
T Consensus 20 ~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~ 50 (676)
T 3qa8_A 20 ERLGTGGFGYVLRWIHQDTGEQVAIKQCRQE 50 (676)
T ss_dssp CCCCBCSSSBCCCCCCTTTTCCEEECCCCSC
T ss_pred EEEeeCCCeEEEEEEECCCCcEEEEEEeccc
Confidence 6899999999999987 45889999986543
No 323
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=86.57 E-value=0.021 Score=56.45 Aligned_cols=28 Identities=11% Similarity=0.089 Sum_probs=24.4
Q ss_pred cceeecccceeeehhh-hhhhhHHHHHHH
Q psy3329 641 SFLTLGNFGLISVGVI-ILSAMVYFSFYA 668 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~ 668 (694)
..||+|+||.||+|+- .+|..||||+..
T Consensus 15 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~ 43 (308)
T 3g33_A 15 AEIGVGAYGTVYKARDPHSGHFVALKSVR 43 (308)
T ss_dssp EEECCSSSCCEEEEECTTTCCEEEEEEEE
T ss_pred EEEecCCCeEEEEEEECCCCcEEEEEEEe
Confidence 6799999999999984 577899999875
No 324
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=86.50 E-value=0.046 Score=54.65 Aligned_cols=41 Identities=15% Similarity=0.211 Sum_probs=30.4
Q ss_pred CccccccccCcccceeecccceeeehhhhh-hhhHHHHHHHh
Q psy3329 629 PSYINMEKLNSKSFLTLGNFGLISVGVIIL-SAMVYFSFYAR 669 (694)
Q Consensus 629 ~s~~~l~~~~~~~~iG~G~fG~VYkg~l~~-g~~vaV~~~~~ 669 (694)
.-|..+.+-.--..||+|+||.||+|+-.+ |..||||+...
T Consensus 19 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~ 60 (331)
T 4aaa_A 19 LYFQSMEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLE 60 (331)
T ss_dssp CCCBCGGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEES
T ss_pred hhhhhhhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEec
Confidence 334444444555799999999999998765 77999997643
No 325
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=86.45 E-value=0.082 Score=56.92 Aligned_cols=32 Identities=16% Similarity=0.159 Sum_probs=26.9
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHhhHh
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHLY 672 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~~ 672 (694)
++||+|+||.||+|+.. +|..||||+......
T Consensus 190 ~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~ 222 (576)
T 2acx_A 190 RVLGKGGFGEVCACQVRATGKMYACKKLEKKRI 222 (576)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEEEEEHHHH
T ss_pred EEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhh
Confidence 78999999999999875 688999998765543
No 326
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=86.42 E-value=0.061 Score=54.77 Aligned_cols=29 Identities=14% Similarity=0.200 Sum_probs=24.8
Q ss_pred cceeecccceeeehhh-hhhhhHHHHHHHh
Q psy3329 641 SFLTLGNFGLISVGVI-ILSAMVYFSFYAR 669 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~ 669 (694)
..||+|+||.||+|+- .+|..||||+...
T Consensus 48 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~ 77 (371)
T 4exu_A 48 THVGSGAYGSVCSAIDKRSGEKVAIKKLSR 77 (371)
T ss_dssp EEEEECSSEEEEEEEETTTTEEEEEEEECS
T ss_pred eEEecCCCeEEEEEEECCCCCEEEEEEecc
Confidence 6899999999999974 4688999998754
No 327
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=86.37 E-value=0.09 Score=51.91 Aligned_cols=30 Identities=10% Similarity=0.127 Sum_probs=25.6
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+-. +|..||||+....
T Consensus 40 ~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~ 70 (309)
T 2h34_A 40 RLVGRGGMGDVYEAEDTVRERIVALKLMSET 70 (309)
T ss_dssp EEEEECSSSEEEEEEETTTTEEEEEEECGGG
T ss_pred EEEcCCCCeeEEEEEEcCCCeEEEEEecCcc
Confidence 68999999999999864 6789999987654
No 328
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*
Probab=86.31 E-value=0.083 Score=51.04 Aligned_cols=31 Identities=23% Similarity=0.338 Sum_probs=26.5
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHhhH
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHL 671 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~ 671 (694)
..||+|+||.||+|+.. +|..||||+.....
T Consensus 17 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~ 48 (276)
T 2h6d_A 17 DTLGVGTFGKVKIGEHQLTGHKVAVKILNRQK 48 (276)
T ss_dssp EEEEECSSEEEEEEEETTTCCEEEEEEEEHHH
T ss_pred eeecCCCCeEEEEEEECCCCceEEEEEecccc
Confidence 67999999999999875 78899999876554
No 329
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}
Probab=86.31 E-value=0.042 Score=54.35 Aligned_cols=29 Identities=10% Similarity=0.099 Sum_probs=24.4
Q ss_pred cceeecccceeeehhhhh-hhhHHHHHHHh
Q psy3329 641 SFLTLGNFGLISVGVIIL-SAMVYFSFYAR 669 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~-g~~vaV~~~~~ 669 (694)
..||+|+||.||+|+... |..||||+...
T Consensus 9 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~ 38 (311)
T 4agu_A 9 GKIGEGSYGVVFKCRNRDTGQIVAIKKFLE 38 (311)
T ss_dssp EEEEECSSEEEEEEEETTTCCEEEEEEECC
T ss_pred eEEeecCCeEEEEEEeCCCCcEEEEEEeec
Confidence 579999999999998754 78999997643
No 330
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=86.26 E-value=0.061 Score=53.62 Aligned_cols=30 Identities=27% Similarity=0.259 Sum_probs=25.2
Q ss_pred cceeecccceeeehhh-----hhhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVI-----ILSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l-----~~g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+. .+|..||||+....
T Consensus 29 ~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~ 63 (327)
T 3lxl_A 29 SQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHS 63 (327)
T ss_dssp EEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSC
T ss_pred hhccCCCCeEEEEEEeccCCCCcceEEEEEEeccC
Confidence 6899999999999984 56779999987544
No 331
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...
Probab=86.23 E-value=0.091 Score=50.89 Aligned_cols=31 Identities=13% Similarity=0.110 Sum_probs=24.9
Q ss_pred cceeecccceeeehhhhh-hhhHHHHHHHhhH
Q psy3329 641 SFLTLGNFGLISVGVIIL-SAMVYFSFYARHL 671 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~-g~~vaV~~~~~~~ 671 (694)
..||+|+||.||+|+-.. |..||||+.....
T Consensus 15 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~ 46 (279)
T 3fdn_A 15 RPLGKGKFGNVYLAREKQSKFILALKVLFKAQ 46 (279)
T ss_dssp EEEEECSSEEEEEEEETTTCCEEEEEEEEHHH
T ss_pred eEEecCCCeEEEEEEEccCCcEEEEEEEeccc
Confidence 689999999999997654 4589999875544
No 332
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}
Probab=86.19 E-value=0.065 Score=52.94 Aligned_cols=29 Identities=14% Similarity=0.035 Sum_probs=24.2
Q ss_pred ccceeecccceeeehhhh-hhhhHHHHHHH
Q psy3329 640 KSFLTLGNFGLISVGVII-LSAMVYFSFYA 668 (694)
Q Consensus 640 ~~~iG~G~fG~VYkg~l~-~g~~vaV~~~~ 668 (694)
.+.||+|+||.||+|+.. +|..||||+..
T Consensus 15 ~~~lG~G~~g~V~~~~~~~~~~~va~K~~~ 44 (310)
T 3s95_A 15 GEVLGKGCFGQAIKVTHRETGEVMVMKELI 44 (310)
T ss_dssp EEEEECCSSEEEEEEEETTTCCEEEEEEES
T ss_pred cceecCCCCEEEEEEEECCCCcEEEEEEec
Confidence 368999999999999874 57799998653
No 333
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=86.14 E-value=0.054 Score=54.09 Aligned_cols=30 Identities=13% Similarity=0.167 Sum_probs=25.4
Q ss_pred cceeecccceeeehh-hhhhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGV-IILSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~-l~~g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+ ..+|..||||+....
T Consensus 40 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~ 70 (329)
T 3gbz_A 40 TKLGEGTYGEVYKAIDTVTNETVAIKRIRLE 70 (329)
T ss_dssp EEEEECSSSEEEEEEETTTTEEEEEEECCCC
T ss_pred EEEEecCCeEEEEEEECCCCceEEEEEEccc
Confidence 689999999999997 557889999987543
No 334
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=86.14 E-value=0.085 Score=55.35 Aligned_cols=30 Identities=20% Similarity=0.107 Sum_probs=26.6
Q ss_pred cceeecccceeeehhhhhhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVIILSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+..++..||||+....
T Consensus 190 ~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~ 219 (452)
T 1fmk_A 190 VKLGQGCFGEVWMGTWNGTTRVAIKTLKPG 219 (452)
T ss_dssp EEEEECSSCEEEEEEETTTEEEEEEECCTT
T ss_pred eeecCCCCeEEEEEEECCCceEEEEEeccC
Confidence 689999999999999988888999987643
No 335
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A
Probab=86.12 E-value=0.048 Score=53.34 Aligned_cols=30 Identities=10% Similarity=0.037 Sum_probs=25.0
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+-. +|..||||+....
T Consensus 8 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~ 38 (292)
T 3o0g_A 8 EKIGEGTYGTVFKAKNRETHEIVALKRVRLD 38 (292)
T ss_dssp EEEEECSSSEEEEEEETTTCCEEEEEEEESS
T ss_pred eEecCCCCeEEEEEEECCCCceEEEEeeecc
Confidence 57999999999999875 5779999987543
No 336
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Probab=86.10 E-value=0.029 Score=55.85 Aligned_cols=31 Identities=13% Similarity=0.060 Sum_probs=25.7
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHhhH
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHL 671 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~ 671 (694)
..||+|+||.||+|+-. +|..||||+.....
T Consensus 18 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~ 49 (321)
T 2a2a_A 18 EELGSGQFAIVKKCREKSTGLEYAAKFIKKRQ 49 (321)
T ss_dssp EEEEECSSEEEEEEEETTTCCEEEEEEEEBCS
T ss_pred eEeeecCCEEEEEEEECCCCeEEEEEEEeccc
Confidence 68999999999999865 57899999876543
No 337
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*
Probab=86.09 E-value=0.079 Score=51.83 Aligned_cols=31 Identities=13% Similarity=-0.038 Sum_probs=25.3
Q ss_pred ccceeecccceeeehhhhh-hhhHHHHHHHhh
Q psy3329 640 KSFLTLGNFGLISVGVIIL-SAMVYFSFYARH 670 (694)
Q Consensus 640 ~~~iG~G~fG~VYkg~l~~-g~~vaV~~~~~~ 670 (694)
...||+|+||.||+|+..+ |..||+|+....
T Consensus 20 ~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~ 51 (294)
T 2rku_A 20 GRFLGKGGFAKCFEISDADTKEVFAGKIVPKS 51 (294)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEEEEGG
T ss_pred EEEEeecCCEEEEEEEECCCCceEEEEEechh
Confidence 3789999999999999864 568899886544
No 338
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=86.09 E-value=0.064 Score=56.31 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=25.2
Q ss_pred cceeecccceeeehhhhhhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVIILSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+.. |+.||||+....
T Consensus 199 ~~lG~G~fg~V~~~~~~-~~~vavK~~~~~ 227 (450)
T 1k9a_A 199 QTIGKGEFGDVMLGDYR-GNKVAVKCIKND 227 (450)
T ss_dssp EEEEECSSEEEEEEEET-TEEEEEEEESSC
T ss_pred eeecCcCCeeEEEEEec-CCeEEEEEeCCc
Confidence 78999999999999985 779999987643
No 339
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=85.98 E-value=0.08 Score=51.99 Aligned_cols=29 Identities=14% Similarity=0.013 Sum_probs=24.7
Q ss_pred cceeecccceeeehhh-hhhhhHHHHHHHh
Q psy3329 641 SFLTLGNFGLISVGVI-ILSAMVYFSFYAR 669 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~ 669 (694)
.+||+|+||.||+|+- .+|..||||+...
T Consensus 24 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~ 53 (299)
T 3m2w_A 24 QVLGLGINGKVLQIFNKRTQEKFALKMLQD 53 (299)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEEEEEC
T ss_pred cccccCCCeEEEEEEEcCCCcEEEEEEecc
Confidence 5799999999999975 5677999998754
No 340
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=85.91 E-value=0.08 Score=55.75 Aligned_cols=30 Identities=17% Similarity=0.217 Sum_probs=25.1
Q ss_pred cceeecccceeeehh-hhhhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGV-IILSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~-l~~g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+ ...|..||||+....
T Consensus 68 ~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~ 98 (464)
T 3ttj_A 68 KPIGSGAQGIVCAAYDAVLDRNVAIKKLSRP 98 (464)
T ss_dssp EEEEECSSCEEEEEEETTTTEEEEEEEEESG
T ss_pred EEeecCCCeEEEEEEECCCCCEEEEEEECcc
Confidence 689999999999996 446789999987643
No 341
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=85.90 E-value=0.059 Score=52.78 Aligned_cols=28 Identities=25% Similarity=0.400 Sum_probs=24.7
Q ss_pred cceeecccceeeehh-hhhhhhHHHHHHH
Q psy3329 641 SFLTLGNFGLISVGV-IILSAMVYFSFYA 668 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~-l~~g~~vaV~~~~ 668 (694)
..||+|+||.||+|+ ..+|..||||+..
T Consensus 16 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~ 44 (298)
T 1csn_A 16 RRIGEGSFGVIFEGTNLLNNQQVAIKFEP 44 (298)
T ss_dssp EEEEECSSCEEEEEEETTTTEEEEEEEEE
T ss_pred EEEeecCCEEEEEEEECCCCcEEEEEEec
Confidence 679999999999999 4688899999764
No 342
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=85.89 E-value=0.075 Score=58.42 Aligned_cols=31 Identities=23% Similarity=0.275 Sum_probs=25.2
Q ss_pred cceeecccceeeehhhh---hhhhHHHHHHHhhH
Q psy3329 641 SFLTLGNFGLISVGVII---LSAMVYFSFYARHL 671 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~---~g~~vaV~~~~~~~ 671 (694)
+.||+|+||.||+|... .|..||||+.....
T Consensus 375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~ 408 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEA 408 (635)
T ss_dssp EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGG
T ss_pred CEeccCCCEEEEEEEEcCCCcceEEEEEEecccc
Confidence 57999999999999764 45689999886543
No 343
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=85.69 E-value=0.054 Score=55.94 Aligned_cols=30 Identities=7% Similarity=-0.072 Sum_probs=19.9
Q ss_pred cceeecccceeeehhhh---hhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVII---LSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~---~g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+.. +|..||||+....
T Consensus 27 ~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~ 59 (405)
T 3rgf_A 27 CKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGT 59 (405)
T ss_dssp CCCC-----EEEEEEESSSSCCCCEEEEECSSS
T ss_pred cEeeecCCeEEEEEEEccCCCCeEEEEEEECCC
Confidence 57999999999999976 4668999987543
No 344
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=85.68 E-value=0.097 Score=50.86 Aligned_cols=31 Identities=13% Similarity=0.099 Sum_probs=25.5
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHhhH
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHL 671 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~ 671 (694)
..||+|+||.||+|+-. +|..||||+.....
T Consensus 20 ~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~ 51 (284)
T 2vgo_A 20 RPLGKGKFGNVYLAREKQNKFIMALKVLFKSQ 51 (284)
T ss_dssp EEEEECSSEEEEEEEETTTTEEEEEEEEEHHH
T ss_pred heecCCCCeEEEEEEEcCCCcEEEEEEEcccc
Confidence 68999999999999875 46689999875543
No 345
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=85.64 E-value=0.071 Score=53.82 Aligned_cols=29 Identities=14% Similarity=0.200 Sum_probs=24.9
Q ss_pred cceeecccceeeehhh-hhhhhHHHHHHHh
Q psy3329 641 SFLTLGNFGLISVGVI-ILSAMVYFSFYAR 669 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~ 669 (694)
..||+|+||.||+|+- .+|..||||+...
T Consensus 30 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~ 59 (353)
T 3coi_A 30 THVGSGAYGSVCSAIDKRSGEKVAIKKLSR 59 (353)
T ss_dssp EEEEECSSEEEEEEEETTTTEEEEEEEESS
T ss_pred eeEecCCCeEEEEEEECCCCCEEEEEEecc
Confidence 6899999999999985 4688999998754
No 346
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=85.63 E-value=0.067 Score=52.98 Aligned_cols=28 Identities=11% Similarity=-0.047 Sum_probs=22.5
Q ss_pred cceeecccceeeehhh-hhhhhHHHHHHH
Q psy3329 641 SFLTLGNFGLISVGVI-ILSAMVYFSFYA 668 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~ 668 (694)
..||+|+||.||+|+- .+|..||||+..
T Consensus 35 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~ 63 (317)
T 2buj_A 35 QKLGEGGFSYVDLVEGLHDGHFYALKRIL 63 (317)
T ss_dssp EEEEC--CEEEEEEEETTTCCEEEEEEEE
T ss_pred EEecCCCCeEEEEEEecCCCcEEEEEEEe
Confidence 6899999999999986 678899999763
No 347
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=85.62 E-value=0.096 Score=52.78 Aligned_cols=31 Identities=13% Similarity=0.112 Sum_probs=26.2
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHhhH
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHL 671 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~ 671 (694)
..||+|+||.||+|+-. +|..||||+.....
T Consensus 47 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~ 78 (350)
T 1rdq_E 47 KTLGTGSFGRVMLVKHKESGNHYAMKILDKQK 78 (350)
T ss_dssp EEEEECSSCEEEEEEETTTCCEEEEEEEEHHH
T ss_pred EEeecCcCcEEEEEEECCCCCEEEEEEEEhHH
Confidence 68999999999999865 67899999876543
No 348
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Probab=85.61 E-value=0.084 Score=52.67 Aligned_cols=29 Identities=21% Similarity=0.337 Sum_probs=24.1
Q ss_pred cceeecccceeeehh-hhhhhhHHHHHHHh
Q psy3329 641 SFLTLGNFGLISVGV-IILSAMVYFSFYAR 669 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~-l~~g~~vaV~~~~~ 669 (694)
..||+|+||.||+|+ ..+|..||||+...
T Consensus 15 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~ 44 (330)
T 2izr_A 15 KKIGCGNFGELRLGKNLYTNEYVAIKLEPM 44 (330)
T ss_dssp EECCC-CTTSEEEEEETTTTEEEEEEEEET
T ss_pred EEeeccCCceEEEEEECCCCcEEEEEEecc
Confidence 689999999999998 46788999998654
No 349
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=85.54 E-value=0.055 Score=52.62 Aligned_cols=29 Identities=14% Similarity=0.064 Sum_probs=25.3
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHh
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYAR 669 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~ 669 (694)
..||+|+||.||+|+-. +|..||||+...
T Consensus 17 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~ 46 (289)
T 1x8b_A 17 EKIGSGEFGSVFKCVKRLDGCIYAIKRSKK 46 (289)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEEEEEC
T ss_pred hhhcCCCceEEEEEEEcCCCceEEEEEecc
Confidence 68999999999999876 788999998654
No 350
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=85.45 E-value=0.063 Score=52.44 Aligned_cols=27 Identities=19% Similarity=0.127 Sum_probs=22.2
Q ss_pred cceeecccceeeehhhhhhhhHHHHHHHh
Q psy3329 641 SFLTLGNFGLISVGVIILSAMVYFSFYAR 669 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~ 669 (694)
..||+|+||.||+|+... .||||+...
T Consensus 30 ~~lG~G~~g~Vy~~~~~~--~vavK~~~~ 56 (289)
T 3og7_A 30 QRIGSGSFGTVYKGKWHG--DVAVKMLNV 56 (289)
T ss_dssp EEEEECSSEEEEEEESSS--EEEEEEESC
T ss_pred eEecCCCCeEEEEEEEcC--ceEEEEEec
Confidence 689999999999998754 388887754
No 351
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}
Probab=85.34 E-value=0.035 Score=55.42 Aligned_cols=31 Identities=13% Similarity=0.054 Sum_probs=25.6
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHhhH
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHL 671 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~ 671 (694)
..||+|+||.||+|+-. +|..||||+.....
T Consensus 17 ~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~ 48 (326)
T 2y0a_A 17 EELGSGQFAVVKKCREKSTGLQYAAKFIKKRR 48 (326)
T ss_dssp EEEECCSSEEEEEEEETTTCCEEEEEEEEBCC
T ss_pred eEEeeCCCeEEEEEEECCCCcEEEEEEEEccc
Confidence 67999999999999875 57799999876543
No 352
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=85.32 E-value=0.1 Score=55.85 Aligned_cols=32 Identities=13% Similarity=0.114 Sum_probs=27.0
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHhhHh
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHLY 672 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~~ 672 (694)
++||+|+||.||+|+.. +|..||||+......
T Consensus 191 ~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~ 223 (543)
T 3c4z_A 191 RVLGRGGFGEVFACQMKATGKLYACKKLNKKRL 223 (543)
T ss_dssp EEEEECSSSEEEEEEETTTCCEEEEEEEEHHHH
T ss_pred EEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHh
Confidence 68999999999999975 588999998865543
No 353
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=85.31 E-value=0.072 Score=52.09 Aligned_cols=28 Identities=21% Similarity=0.221 Sum_probs=24.0
Q ss_pred cceeecccceeeehhh-hhhhhHHHHHHH
Q psy3329 641 SFLTLGNFGLISVGVI-ILSAMVYFSFYA 668 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~ 668 (694)
..||+|+||.||+|+- .+|..||||+..
T Consensus 15 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~ 43 (296)
T 4hgt_A 15 RKIGSGSFGDIYLGTDIAAGEEVAIKLEC 43 (296)
T ss_dssp EEEEECSSSEEEEEEETTTTEEEEEEEEE
T ss_pred eeecCCCCeEEEEEEEcCCCceEEEEeec
Confidence 6899999999999984 678899999743
No 354
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=85.15 E-value=0.068 Score=53.26 Aligned_cols=29 Identities=21% Similarity=0.196 Sum_probs=24.7
Q ss_pred cceeecccceeeehhh-----hhhhhHHHHHHHh
Q psy3329 641 SFLTLGNFGLISVGVI-----ILSAMVYFSFYAR 669 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l-----~~g~~vaV~~~~~ 669 (694)
..||+|+||.||+|+. .+|..||||+...
T Consensus 47 ~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~ 80 (326)
T 2w1i_A 47 QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQH 80 (326)
T ss_dssp EEEECCSSEEEEEEEECTTSSSCCEEEEEEEESS
T ss_pred eeeccCCCeEEEEEEeccccCCCceEEEEEEecc
Confidence 6899999999999984 4678999998754
No 355
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A
Probab=85.13 E-value=0.083 Score=51.78 Aligned_cols=29 Identities=17% Similarity=0.127 Sum_probs=24.9
Q ss_pred cceeecccceeeehhh-hhhhhHHHHHHHh
Q psy3329 641 SFLTLGNFGLISVGVI-ILSAMVYFSFYAR 669 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~ 669 (694)
..||+|+||.||+|+- .+|..||||+...
T Consensus 12 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~ 41 (303)
T 1zy4_A 12 AVLGQGAFGQVVKARNALDSRYYAIKKIRH 41 (303)
T ss_dssp EEEEECSSEEEEEEEETTTCCEEEEEEEEE
T ss_pred heeccCCcEEEEEEEEcCCCeEEEEEEEec
Confidence 6799999999999985 4788999998743
No 356
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Probab=85.11 E-value=0.065 Score=52.42 Aligned_cols=29 Identities=21% Similarity=0.190 Sum_probs=25.0
Q ss_pred cceeecccceeeehhh-hhhhhHHHHHHHh
Q psy3329 641 SFLTLGNFGLISVGVI-ILSAMVYFSFYAR 669 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~ 669 (694)
..||+|+||.||+|+- .+|..||||+...
T Consensus 15 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~ 44 (296)
T 3uzp_A 15 RKIGSGSFGDIYLGTDIAAGEEVAIKLECV 44 (296)
T ss_dssp EEEEEETTEEEEEEEETTTTEEEEEEEEES
T ss_pred EEEccCCCeEEEEEEEcCCCcEEEEEEecC
Confidence 6899999999999984 6888999997543
No 357
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Probab=85.07 E-value=0.064 Score=52.60 Aligned_cols=30 Identities=10% Similarity=0.081 Sum_probs=23.9
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+-. +|..||||+....
T Consensus 9 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~ 39 (299)
T 2r3i_A 9 EKIGEGTYGVVYKARNKLTGEVVALKKIRLD 39 (299)
T ss_dssp EEEEECSSSEEEEEEETTTCCEEEEEEC---
T ss_pred hhhccCCCeeEEEEEEcCCCceEEEEEeecC
Confidence 57999999999999875 6789999987544
No 358
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=85.07 E-value=0.11 Score=52.92 Aligned_cols=28 Identities=14% Similarity=0.141 Sum_probs=24.5
Q ss_pred cceeecccceeeehhh-hhhhhHHHHHHH
Q psy3329 641 SFLTLGNFGLISVGVI-ILSAMVYFSFYA 668 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~ 668 (694)
..||+|+||.||+|+- .+|..||||+..
T Consensus 25 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~ 53 (373)
T 1q8y_A 25 RKLGWGHFSTVWLAKDMVNNTHVAMKIVR 53 (373)
T ss_dssp EEEEECSSEEEEEEEETTTTEEEEEEEEC
T ss_pred EeeeecCCeEEEEEEecCCCcEEEEEEec
Confidence 6899999999999984 678899999875
No 359
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=85.07 E-value=0.05 Score=54.31 Aligned_cols=30 Identities=13% Similarity=0.152 Sum_probs=25.4
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~ 670 (694)
+.||+|+||.||+|+-. +|..||||+....
T Consensus 35 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~ 65 (327)
T 3lm5_A 35 KELGRGKFAVVRQCISKSTGQEYAAKFLKKR 65 (327)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEEEEESE
T ss_pred ceeCCCCCeEEEEEEECCCCCEEEEEEEehh
Confidence 67999999999999865 5789999987653
No 360
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}
Probab=85.05 E-value=0.11 Score=50.92 Aligned_cols=32 Identities=9% Similarity=0.076 Sum_probs=26.0
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHhhHh
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHLY 672 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~~ 672 (694)
..||+|+||.||+|+-. +|..||||+......
T Consensus 11 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~ 43 (305)
T 2wtk_C 11 DLLGEGSYGKVKEVLDSETLCRRAVKILKKKKL 43 (305)
T ss_dssp CEEEECSSCEEEEEEBTTTCCEEEEEEECHHHH
T ss_pred eEEecCCCeEEEEEEECCCCcEEEEEEeccccc
Confidence 68999999999999864 567899998765543
No 361
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=85.02 E-value=0.11 Score=50.74 Aligned_cols=28 Identities=7% Similarity=-0.037 Sum_probs=24.4
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHH
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYA 668 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~ 668 (694)
..||+|+||.||+|+-. +|..||||+..
T Consensus 23 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~ 51 (298)
T 1phk_A 23 EILGRGVSSVVRRCIHKPTCKEYAVKIID 51 (298)
T ss_dssp EEEEECSSEEEEEEEETTTTEEEEEEEEE
T ss_pred eeecCCCceEEEEEEEcCcCceEEEEEEe
Confidence 68999999999999875 57799999864
No 362
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=84.97 E-value=0.077 Score=54.01 Aligned_cols=29 Identities=21% Similarity=0.210 Sum_probs=24.6
Q ss_pred cceeecccceeeehhh-hhhhhHHHHHHHh
Q psy3329 641 SFLTLGNFGLISVGVI-ILSAMVYFSFYAR 669 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~ 669 (694)
..||+|+||.||+|+- .+|..||||+...
T Consensus 31 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~ 60 (371)
T 2xrw_A 31 KPIGSGAQGIVCAAYDAILERNVAIKKLSR 60 (371)
T ss_dssp EEEEECSSEEEEEEEETTTTEEEEEEEEEC
T ss_pred eeeEecCCEEEEEEEECCCCceEEEEEecc
Confidence 6899999999999974 4678999998754
No 363
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=84.90 E-value=0.098 Score=52.34 Aligned_cols=30 Identities=13% Similarity=-0.027 Sum_probs=25.0
Q ss_pred cceeecccceeeehhhhh-hhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVIIL-SAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~-g~~vaV~~~~~~ 670 (694)
+.||+|+||.||+++-.+ |..||||+....
T Consensus 47 ~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~ 77 (335)
T 2owb_A 47 RFLGKGGFAKCFEISDADTKEVFAGKIVPKS 77 (335)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEEEEEGG
T ss_pred EEEeeCCCeEEEEEEECCCCCEEEEEEechh
Confidence 789999999999998765 568999987544
No 364
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=84.78 E-value=0.1 Score=53.79 Aligned_cols=28 Identities=14% Similarity=0.020 Sum_probs=24.0
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHH
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYA 668 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~ 668 (694)
.+||+|+||.||+|+-. +|..||||+..
T Consensus 68 ~~LG~G~~g~V~~~~~~~~~~~vAiK~~~ 96 (400)
T 1nxk_A 68 QVLGLGINGKVLQIFNKRTQEKFALKMLQ 96 (400)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEEEEE
T ss_pred ceeeeccCeEEEEEEECCCCCEEEEEEeC
Confidence 57999999999999864 57789999874
No 365
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=84.78 E-value=0.037 Score=55.90 Aligned_cols=30 Identities=13% Similarity=0.030 Sum_probs=25.4
Q ss_pred cceeecccceeeehhh-hhhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVI-ILSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+. .+|..||||+....
T Consensus 23 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~ 53 (351)
T 3mi9_A 23 AKIGQGTFGEVFKARHRKTGQKVALKKVLME 53 (351)
T ss_dssp EECSSCSTTSEEEEEETTTCCEEEEEECCCS
T ss_pred EEEecCCCcEEEEEEECCCCCEEEEEEEecc
Confidence 6899999999999987 57889999976443
No 366
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=84.72 E-value=0.097 Score=52.39 Aligned_cols=31 Identities=26% Similarity=0.279 Sum_probs=26.1
Q ss_pred cceeecccceeeehh-hhhhhhHHHHHHHhhH
Q psy3329 641 SFLTLGNFGLISVGV-IILSAMVYFSFYARHL 671 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~-l~~g~~vaV~~~~~~~ 671 (694)
..||+|+||.||+|+ ..+|..||||+.....
T Consensus 30 ~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~ 61 (335)
T 3dls_A 30 SPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEK 61 (335)
T ss_dssp EECSSSSSCSEEEEEETTTTEEEEEEEEESTT
T ss_pred eEEEecCCEEEEEEEECCCCcEEEEEEEehhh
Confidence 689999999999997 5678899999876543
No 367
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}
Probab=84.71 E-value=0.11 Score=52.97 Aligned_cols=31 Identities=13% Similarity=0.190 Sum_probs=25.3
Q ss_pred cceeecccceeeehhhhh-hhhHHHHHHHhhH
Q psy3329 641 SFLTLGNFGLISVGVIIL-SAMVYFSFYARHL 671 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~-g~~vaV~~~~~~~ 671 (694)
..||+|+||.||+|+-.+ |..||||+.....
T Consensus 21 ~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~ 52 (384)
T 4fr4_A 21 RAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQK 52 (384)
T ss_dssp EEEECCTTCCEEEEEETTTCCEEEEEEEEHHH
T ss_pred EEEeeCCCeEEEEEEECCCCCEEEEEEEehhh
Confidence 689999999999998654 5689999875544
No 368
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}
Probab=84.69 E-value=0.1 Score=51.50 Aligned_cols=29 Identities=14% Similarity=0.166 Sum_probs=24.5
Q ss_pred ccceeecccceeeehhhhhhhhHHHHHHHh
Q psy3329 640 KSFLTLGNFGLISVGVIILSAMVYFSFYAR 669 (694)
Q Consensus 640 ~~~iG~G~fG~VYkg~l~~g~~vaV~~~~~ 669 (694)
.+.||+|+||.||+|+.. |..||||+...
T Consensus 13 ~~~lg~G~~g~V~~~~~~-~~~vavK~~~~ 41 (307)
T 2eva_A 13 EEVVGRGAFGVVCKAKWR-AKDVAIKQIES 41 (307)
T ss_dssp EEEEECCSSSEEEEEEET-TEEEEEEECSS
T ss_pred eeEeecCCCceEEEEEEC-CeeEEEEEecC
Confidence 368999999999999984 67899998753
No 369
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Probab=84.61 E-value=0.084 Score=51.25 Aligned_cols=31 Identities=13% Similarity=0.008 Sum_probs=25.5
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHhhH
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHL 671 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~ 671 (694)
+.||+|+||.||+|+-. +|..||||+.....
T Consensus 12 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~ 43 (284)
T 3kk8_A 12 EELGKGAFSVVRRCVHKTTGLEFAAKIINTKK 43 (284)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEEEEEGGG
T ss_pred hhhcCcCCeEEEEEEEcCCCceEEEEEeeccc
Confidence 67999999999999854 57799999875543
No 370
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}
Probab=84.55 E-value=0.12 Score=54.64 Aligned_cols=29 Identities=21% Similarity=0.198 Sum_probs=24.7
Q ss_pred cceeecccceeeehhh-hhhhhHHHHHHHh
Q psy3329 641 SFLTLGNFGLISVGVI-ILSAMVYFSFYAR 669 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~ 669 (694)
..||+|+||.||+|+. .+|..||||+...
T Consensus 13 ~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~ 42 (483)
T 3sv0_A 13 RKIGSGSFGEIYLGTNIQTNEEVAIKLENV 42 (483)
T ss_dssp CCCEECSSCEEEEEEETTTCCEEEEEEEET
T ss_pred EEEeeCCCEEEEEEEECCCCcEEEEEEecc
Confidence 6899999999999984 6788999997543
No 371
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=84.54 E-value=2 Score=33.75 Aligned_cols=46 Identities=22% Similarity=0.440 Sum_probs=23.0
Q ss_pred cCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCC
Q psy3329 51 TLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNR 97 (694)
Q Consensus 51 ~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~ 97 (694)
.++.|...+|.+|..|+.+.+..+ ++.|...+|.+|.+|+.+.+..
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344444455555555555555432 4444445555555555555543
No 372
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=84.47 E-value=0.11 Score=53.91 Aligned_cols=31 Identities=13% Similarity=0.111 Sum_probs=25.5
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHhhH
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHL 671 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~ 671 (694)
+.||+|+||.||+|+-. +|..||||+.....
T Consensus 141 ~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~ 172 (419)
T 3i6u_A 141 KTLGSGACGEVKLAFERKTCKKVAIRIISKRK 172 (419)
T ss_dssp EEEEECSSSEEEEEEETTTCCEEEEEEEEGGG
T ss_pred eEEeeCCCeEEEEEEECCCCcEEEEEEEEech
Confidence 67999999999999754 46799999876654
No 373
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=84.40 E-value=0.083 Score=53.20 Aligned_cols=29 Identities=17% Similarity=0.135 Sum_probs=23.7
Q ss_pred cceeecccceeeehhhh-hh-hhHHHHHHHh
Q psy3329 641 SFLTLGNFGLISVGVII-LS-AMVYFSFYAR 669 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g-~~vaV~~~~~ 669 (694)
..||+|+||.||+|+-. +| ..||||+...
T Consensus 25 ~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~ 55 (355)
T 2eu9_A 25 GNLGEGTFGKVVECLDHARGKSQVALKIIRN 55 (355)
T ss_dssp EEEEEETTEEEEEEEETTTTTEEEEEEEECS
T ss_pred EEeeccCCeEEEEEEecCCCceEEEEEEEcc
Confidence 68999999999999753 33 6899998754
No 374
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=84.28 E-value=0.12 Score=55.60 Aligned_cols=30 Identities=20% Similarity=0.107 Sum_probs=26.5
Q ss_pred cceeecccceeeehhhhhhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVIILSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+..++..||||+....
T Consensus 273 ~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~ 302 (535)
T 2h8h_A 273 VKLGQGCFGEVWMGTWNGTTRVAIKTLKPG 302 (535)
T ss_dssp EEEEECSSEEEEEEEETTTEEEEEEEECTT
T ss_pred eecccCCCeEEEEEEECCCceEEEEEeCCC
Confidence 689999999999999988888999987643
No 375
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=84.20 E-value=0.041 Score=55.71 Aligned_cols=30 Identities=17% Similarity=0.212 Sum_probs=15.5
Q ss_pred ccceeecccceeeehhhh-hhhhHHHHHHHh
Q psy3329 640 KSFLTLGNFGLISVGVII-LSAMVYFSFYAR 669 (694)
Q Consensus 640 ~~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~ 669 (694)
...||+|+||.||+|+.. +|..||||+...
T Consensus 28 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~ 58 (360)
T 3e3p_A 28 ERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQ 58 (360)
T ss_dssp C----------CEEEEETTTCCEEEEEEEEC
T ss_pred EEEEecCCCeEEEEEEECCCCCEEEEEEEec
Confidence 368999999999999874 578999997643
No 376
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=84.08 E-value=1.5 Score=34.48 Aligned_cols=48 Identities=21% Similarity=0.346 Sum_probs=37.2
Q ss_pred CCCcchh-hhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCC
Q psy3329 27 NPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP 75 (694)
Q Consensus 27 ~~l~~i~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 75 (694)
..++.|. .+|..|.+|+.+.|.. .++.+...+|.+|.+|+.+.+.+..
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECCSC
T ss_pred CccCEecHHHhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcCCC
Confidence 3456666 7788888888888876 4777888888888888888887653
No 377
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=84.02 E-value=0.088 Score=51.66 Aligned_cols=30 Identities=17% Similarity=0.057 Sum_probs=24.2
Q ss_pred cceeecccceeeehhhhh-hhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVIIL-SAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~-g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+... |..||||+....
T Consensus 25 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~ 55 (302)
T 2j7t_A 25 GELGDGAFGKVYKAKNKETGALAAAKVIETK 55 (302)
T ss_dssp EEEECSTTCCEEEEEETTTCCEEEEEEEC--
T ss_pred ceeccCCCeEEEEEEEcCCCcEEEEEEecCC
Confidence 579999999999999864 778999986543
No 378
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}
Probab=84.00 E-value=0.075 Score=54.48 Aligned_cols=28 Identities=14% Similarity=0.116 Sum_probs=16.8
Q ss_pred cceeecccceeeehhh-hhhhhHHHHHHH
Q psy3329 641 SFLTLGNFGLISVGVI-ILSAMVYFSFYA 668 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~ 668 (694)
..||+|+||.||+|+- .+|..||||+..
T Consensus 15 ~~lG~G~~g~V~~~~~~~~~~~vaiK~i~ 43 (388)
T 3oz6_A 15 KKLGKGAYGIVWKSIDRRTGEVVAVKKIF 43 (388)
T ss_dssp EC-------CEEEEEETTTCCEEEEEEEC
T ss_pred EEeeeCCCeEEEEEEECCCCCEEEEEEec
Confidence 5799999999999974 567899999763
No 379
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=83.83 E-value=0.11 Score=52.23 Aligned_cols=31 Identities=13% Similarity=0.293 Sum_probs=25.4
Q ss_pred cceeecccceeeehhh-hhhhhHHHHHHHhhH
Q psy3329 641 SFLTLGNFGLISVGVI-ILSAMVYFSFYARHL 671 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~~ 671 (694)
..||+|+||.||+|+- .+|..||||+.....
T Consensus 32 ~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~ 63 (345)
T 3hko_A 32 GAIGQGSYGVVRVAIENQTRAIRAIKIMNKNK 63 (345)
T ss_dssp EEEEECSSCEEEEEEETTTCCEEEEEEEEHHH
T ss_pred ceeeecCCeEEEEEEECCCCceEEEeehhhhh
Confidence 7899999999999976 455689999876554
No 380
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=83.53 E-value=0.12 Score=52.19 Aligned_cols=30 Identities=20% Similarity=0.190 Sum_probs=23.7
Q ss_pred cceeecccceeeehhhh---------hhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVII---------LSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~---------~g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+.. +|..||||+....
T Consensus 48 ~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~ 86 (352)
T 2jii_A 48 SFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD 86 (352)
T ss_dssp EEEEEETTEEEEEEEECC-----------CEEEEEEETT
T ss_pred EEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc
Confidence 68999999999999887 4889999987543
No 381
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=83.50 E-value=0.11 Score=53.26 Aligned_cols=31 Identities=6% Similarity=0.139 Sum_probs=25.7
Q ss_pred cceeecccceeeehhhhh-hhhHHHHHHHhhH
Q psy3329 641 SFLTLGNFGLISVGVIIL-SAMVYFSFYARHL 671 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~-g~~vaV~~~~~~~ 671 (694)
.+||+|+||.||+|+... |..||||+.....
T Consensus 58 ~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~ 89 (396)
T 4dc2_A 58 RVIGRGSYAKVLLVRLKKTDRIYAMRVVKKEL 89 (396)
T ss_dssp EEEEECSSEEEEEEEETTTTEEEEEEEEEGGG
T ss_pred EEEeeCCCeEEEEEEECCCCCEEEEEEEEhhh
Confidence 689999999999998754 5689999876543
No 382
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}
Probab=83.48 E-value=0.16 Score=49.71 Aligned_cols=27 Identities=19% Similarity=0.130 Sum_probs=23.2
Q ss_pred cceeecccceeeehh-hhhhhhHHHHHH
Q psy3329 641 SFLTLGNFGLISVGV-IILSAMVYFSFY 667 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~-l~~g~~vaV~~~ 667 (694)
..||+|+||.||+|+ ..+|..||||+.
T Consensus 17 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~ 44 (294)
T 4eqm_A 17 DKLGGGGMSTVYLAEDTILNIKVAIKAI 44 (294)
T ss_dssp EEEEEETTEEEEEEEETTTCSEEEEEEE
T ss_pred EEEccCCCEEEEEEEECCCCCeEEEEEe
Confidence 689999999999998 346779999976
No 383
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}
Probab=83.48 E-value=0.077 Score=52.92 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=19.5
Q ss_pred cceeecccceeeehh-hhhhhhHHHH
Q psy3329 641 SFLTLGNFGLISVGV-IILSAMVYFS 665 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~-l~~g~~vaV~ 665 (694)
..||+|+||.||+|+ ..+|..||+|
T Consensus 21 ~~lG~G~~g~Vy~~~~~~~~~~~~~k 46 (327)
T 3lzb_A 21 KVLGSGAFGTVYKGLWIPEGEKVKIP 46 (327)
T ss_dssp EEEEECSSEEEEEEEECCTTCSCCEE
T ss_pred EEeeeCCCeEEEEEEEcCCCceEEEE
Confidence 689999999999998 4566655433
No 384
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=83.41 E-value=0.11 Score=50.43 Aligned_cols=30 Identities=23% Similarity=0.183 Sum_probs=23.7
Q ss_pred cceeecccceeeehhhhhh--------hhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVIILS--------AMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~g--------~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+.... ..||||+....
T Consensus 14 ~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~ 51 (289)
T 4fvq_A 14 ESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKA 51 (289)
T ss_dssp EEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGG
T ss_pred eeeccCCCceEEEEEEecccccccccchhhhhhhcccc
Confidence 6899999999999987652 35899887543
No 385
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=83.38 E-value=0.069 Score=52.06 Aligned_cols=30 Identities=13% Similarity=0.056 Sum_probs=25.5
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+-. +|..||||+....
T Consensus 28 ~~lg~G~~g~V~~~~~~~~~~~valK~~~~~ 58 (287)
T 2wei_A 28 CMLGKGSFGEVLKCKDRITQQEYAVKVINKA 58 (287)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEEEEEGG
T ss_pred EEEcCCCCEEEEEEEEcCCCcEEEEEEeccc
Confidence 68999999999999875 6779999987544
No 386
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Probab=83.36 E-value=0.11 Score=51.69 Aligned_cols=31 Identities=13% Similarity=0.114 Sum_probs=24.6
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHhhH
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHL 671 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~ 671 (694)
..||+|+||.||+|+-. +|..||||+.....
T Consensus 16 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~ 47 (322)
T 2ycf_A 16 KTLGSGACGEVKLAFERKTCKKVAIKIISKRK 47 (322)
T ss_dssp EEEEECSSEEEEEEEETTTTEEEEEEEECC--
T ss_pred eEEecCCCEEEEEEEEcCCCcEEEEEEeehhh
Confidence 67999999999999864 56799999875543
No 387
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Probab=83.27 E-value=0.069 Score=51.72 Aligned_cols=29 Identities=7% Similarity=-0.037 Sum_probs=24.7
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHh
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYAR 669 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~ 669 (694)
..||+|+||.||+|+.. +|..||||+...
T Consensus 12 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~ 41 (279)
T 2w5a_A 12 YTIGTGSYGRCQKIRRKSDGKILVWKELDY 41 (279)
T ss_dssp EEEEECSSSEEEEEEETTTCCEEEEEEEEC
T ss_pred hhccCCCCcEEEEEEECCCCcEEEEEEEEc
Confidence 68999999999999875 677899998754
No 388
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B
Probab=83.26 E-value=0.13 Score=51.04 Aligned_cols=29 Identities=10% Similarity=-0.044 Sum_probs=25.0
Q ss_pred cceeecccceeeehhh--hhhhhHHHHHHHh
Q psy3329 641 SFLTLGNFGLISVGVI--ILSAMVYFSFYAR 669 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l--~~g~~vaV~~~~~ 669 (694)
..||+|+||.||+|+- .+|..||||+...
T Consensus 17 ~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~ 47 (326)
T 1blx_A 17 AEIGEGAYGKVFKARDLKNGGRFVALKRVRV 47 (326)
T ss_dssp EEEEEETTEEEEEEEETTTTTEEEEEEEEEE
T ss_pred eeecccccEEEEEEEecCCCCEEEEEEEecc
Confidence 6899999999999986 5788999998753
No 389
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=83.24 E-value=0.13 Score=54.75 Aligned_cols=29 Identities=24% Similarity=0.164 Sum_probs=25.6
Q ss_pred cceeecccceeeehhhhh-hhhHHHHHHHh
Q psy3329 641 SFLTLGNFGLISVGVIIL-SAMVYFSFYAR 669 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~-g~~vaV~~~~~ 669 (694)
..||+|+||.||+|+... |..||||+...
T Consensus 226 ~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~ 255 (495)
T 1opk_A 226 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKE 255 (495)
T ss_dssp EESGGGTTSSEEEEEEGGGTEEEEEEECCS
T ss_pred eEecCCCCeEEEEEEEcCCCeEEEEEEecC
Confidence 789999999999999876 67899998754
No 390
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=83.19 E-value=0.1 Score=51.54 Aligned_cols=30 Identities=10% Similarity=0.017 Sum_probs=23.3
Q ss_pred ccceeecccceeeehhh-hhhhhHHHHHHHh
Q psy3329 640 KSFLTLGNFGLISVGVI-ILSAMVYFSFYAR 669 (694)
Q Consensus 640 ~~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~ 669 (694)
.+.||+|+||.||+|+. .+|..||||+...
T Consensus 37 ~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~ 67 (310)
T 2wqm_A 37 EKKIGRGQFSEVYRAACLLDGVPVALKKVQI 67 (310)
T ss_dssp EEEEECC--CEEEEEEETTTCCEEEEEEECT
T ss_pred EEeecCCCCceEEEEEEcCCCceEEEEeeeh
Confidence 47899999999999985 5788999997653
No 391
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=82.93 E-value=0.085 Score=52.13 Aligned_cols=30 Identities=23% Similarity=0.223 Sum_probs=21.8
Q ss_pred cceeecccceeeehhhhh----hhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVIIL----SAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~----g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+... |..||||+....
T Consensus 40 ~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~ 73 (313)
T 3brb_A 40 KILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLD 73 (313)
T ss_dssp EEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---
T ss_pred cceeecCCeEEEEEEEeccCCceeEEEEEEEecc
Confidence 689999999999998753 337999987644
No 392
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Probab=82.93 E-value=0.1 Score=52.45 Aligned_cols=31 Identities=3% Similarity=0.037 Sum_probs=25.8
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHhhH
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHL 671 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~ 671 (694)
..||+|+||.||+|+-. +|..||||+.....
T Consensus 28 ~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~ 59 (342)
T 2qr7_A 28 EDIGVGSYSVCKRCIHKATNMEFAVKIIDKSK 59 (342)
T ss_dssp EEEEECSSEEEEEEEETTTTEEEEEEEEETTT
T ss_pred EEEeeCCCEEEEEEEECCCCCEEEEEEEEccc
Confidence 68999999999999865 57799999876543
No 393
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=82.90 E-value=0.11 Score=55.22 Aligned_cols=31 Identities=13% Similarity=0.031 Sum_probs=25.9
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHhhH
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHL 671 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~ 671 (694)
..||+|+||.||+|+-. +|..||||+.....
T Consensus 28 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~ 59 (486)
T 3mwu_A 28 CMLGKGSFGEVLKCKDRITQQEYAVKVINKAS 59 (486)
T ss_dssp EEEECCSSSEEEEEEETTTCCEEEEEEEEHHH
T ss_pred EEEeecCCEEEEEEEECCCCCEEEEEEEeccc
Confidence 68999999999999864 67799999875544
No 394
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=82.87 E-value=0.1 Score=53.55 Aligned_cols=29 Identities=17% Similarity=0.189 Sum_probs=23.7
Q ss_pred ccceeecccceeeehhhhhhhhHHHHHHH
Q psy3329 640 KSFLTLGNFGLISVGVIILSAMVYFSFYA 668 (694)
Q Consensus 640 ~~~iG~G~fG~VYkg~l~~g~~vaV~~~~ 668 (694)
..+||+|+||.||+|+...+..||||...
T Consensus 45 ~~~lG~G~~g~V~~a~~~~~~~~aikk~~ 73 (394)
T 4e7w_A 45 CKVIGNGSFGVVFQAKLVESDEVAIKKVL 73 (394)
T ss_dssp EEEEEEETTEEEEEEEETTTEEEEEEEEE
T ss_pred eEEEeeCCCeEEEEEEECCCCeEEEEEEe
Confidence 36899999999999998777667777553
No 395
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=82.83 E-value=0.12 Score=55.98 Aligned_cols=29 Identities=17% Similarity=0.129 Sum_probs=24.4
Q ss_pred cceeecccceeeehhh-hhhhhHHHHHHHh
Q psy3329 641 SFLTLGNFGLISVGVI-ILSAMVYFSFYAR 669 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~ 669 (694)
..||+|+||.||+|+- .+|..||||+...
T Consensus 163 ~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~ 192 (573)
T 3uto_A 163 EELGTGAFGVVHRVTERATGNNFAAKFVMT 192 (573)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEEEEEC
T ss_pred EEEeeccCeEEEEEEECCCCCEEEEEEEec
Confidence 5799999999999975 5688999997644
No 396
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=82.71 E-value=0.098 Score=52.59 Aligned_cols=30 Identities=20% Similarity=0.175 Sum_probs=19.6
Q ss_pred cceeecccceeeehhhh----hhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVII----LSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~----~g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+.. .+..||||+....
T Consensus 43 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~ 76 (345)
T 2v62_A 43 KKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQE 76 (345)
T ss_dssp EEC------CEEEEEESSSCGGGCCEEEEEEECC
T ss_pred eeEeecCCeEEEEEEecCCCCccceEEEEeeecC
Confidence 68999999999999986 6778999887643
No 397
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=82.69 E-value=0.11 Score=57.33 Aligned_cols=30 Identities=17% Similarity=0.263 Sum_probs=23.9
Q ss_pred cceeecccceeeehhhhh----hhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVIIL----SAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~----g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+... +..||||.....
T Consensus 396 ~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~ 429 (656)
T 2j0j_A 396 RCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNC 429 (656)
T ss_dssp EEEECCSSCCEEEEEECCSSSCCEEEEEEECSST
T ss_pred eEEeeCCCEEEEEEEEecCCCccEEEEEEEeccc
Confidence 689999999999998743 347899876543
No 398
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=82.60 E-value=0.12 Score=50.23 Aligned_cols=30 Identities=13% Similarity=0.100 Sum_probs=23.5
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+.. ++..||||+....
T Consensus 32 ~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~ 62 (290)
T 1t4h_A 32 IEIGRGSFKTVYKGLDTETTVEVAWCELQDR 62 (290)
T ss_dssp EEEEECSSEEEEEEEETTTCCEEEEEEEEGG
T ss_pred eeccCCCCeEEEEeEecCCceEEEEEEecch
Confidence 47999999999999764 4457888876543
No 399
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=82.44 E-value=0.093 Score=53.19 Aligned_cols=29 Identities=21% Similarity=0.260 Sum_probs=25.0
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHh
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYAR 669 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~ 669 (694)
..||+|+||.||+|+-. .|..||||+...
T Consensus 26 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~ 55 (361)
T 3uc3_A 26 KDIGSGNFGVARLMRDKLTKELVAVKYIER 55 (361)
T ss_dssp EEESSSTTSSEEEEEETTTCCEEEEEEEES
T ss_pred EEeccCCCEEEEEEEECCCCcEEEEEEEec
Confidence 67999999999999876 677999998754
No 400
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=82.35 E-value=0.091 Score=53.39 Aligned_cols=29 Identities=21% Similarity=0.155 Sum_probs=18.6
Q ss_pred cceeecccceeeehhh-hhhhhHHHHHHHh
Q psy3329 641 SFLTLGNFGLISVGVI-ILSAMVYFSFYAR 669 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~ 669 (694)
..||+|+||.||+|+- .+|..||||+...
T Consensus 31 ~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~ 60 (367)
T 1cm8_A 31 QPVGSGAYGAVCSAVDGRTGAKVAIKKLYR 60 (367)
T ss_dssp EEC------CEEEEEETTTCCEEEEEECSS
T ss_pred EEeeecCCeEEEEEEECCCCCEEEEEEeCc
Confidence 6899999999999986 4688999997643
No 401
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=82.33 E-value=0.1 Score=55.35 Aligned_cols=30 Identities=13% Similarity=0.127 Sum_probs=25.6
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+-. +|..||||+....
T Consensus 32 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~ 62 (484)
T 3nyv_A 32 RVLGKGSFGEVILCKDKITGQECAVKVISKR 62 (484)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEEEEETT
T ss_pred eEEecCCCEEEEEEEECCCCCEEEEEEEEhh
Confidence 68999999999999875 6779999987544
No 402
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7
Probab=82.17 E-value=0.12 Score=51.27 Aligned_cols=29 Identities=21% Similarity=0.189 Sum_probs=23.8
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHh
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYAR 669 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~ 669 (694)
..||+|+||.||+|+-. +|..||+|+...
T Consensus 11 ~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~ 40 (321)
T 1tki_A 11 EDLGRGEFGIVHRCVETSSKKTYMAKFVKV 40 (321)
T ss_dssp EEEEECSSEEEEEEEETTTTEEEEEEEECC
T ss_pred eEEecCCCeEEEEEEECCCCcEEEEEEEec
Confidence 57999999999999865 467899987653
No 403
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Probab=81.79 E-value=0.12 Score=50.79 Aligned_cols=29 Identities=10% Similarity=0.084 Sum_probs=25.0
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHh
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYAR 669 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~ 669 (694)
..||+|+||.||+|+-. +|..||||+...
T Consensus 15 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~ 44 (304)
T 2jam_A 15 EVLGSGAFSEVFLVKQRLTGKLFALKCIKK 44 (304)
T ss_dssp EEEEECSSEEEEEEEETTTCCEEEEEEEEC
T ss_pred eeccCCCCceEEEEEECCCCCEEEEEEEec
Confidence 68999999999999865 688999998754
No 404
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=81.61 E-value=0.11 Score=54.72 Aligned_cols=29 Identities=14% Similarity=0.167 Sum_probs=15.9
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHh
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYAR 669 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~ 669 (694)
..||+|+||.||+|+-. +|..||||+...
T Consensus 59 ~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~ 88 (458)
T 3rp9_A 59 HLIGTGSYGHVCEAYDKLEKRVVAIKKILR 88 (458)
T ss_dssp CC-------CEEEEEECC--CEEEEEEECS
T ss_pred eEeeecCCeEEEEEEECCCCcEEEEEEech
Confidence 68999999999999743 778999997643
No 405
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=81.55 E-value=0.13 Score=53.76 Aligned_cols=30 Identities=13% Similarity=0.127 Sum_probs=22.6
Q ss_pred cceeecccceeeehh-hhhhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGV-IILSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~-l~~g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+ ..+|..||||+....
T Consensus 17 ~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~ 47 (444)
T 3soa_A 17 EELGKGAFSVVRRCVKVLAGQEYAAMIINTK 47 (444)
T ss_dssp EEEEEC--CEEEEEEETTTTEEEEEEEEESC
T ss_pred EEeccCCCeEEEEEEECCCCcEEEEEEEEcc
Confidence 679999999999996 457889999876543
No 406
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=81.55 E-value=0.14 Score=52.49 Aligned_cols=31 Identities=6% Similarity=0.022 Sum_probs=26.4
Q ss_pred cceeec--ccceeeehhhh-hhhhHHHHHHHhhH
Q psy3329 641 SFLTLG--NFGLISVGVII-LSAMVYFSFYARHL 671 (694)
Q Consensus 641 ~~iG~G--~fG~VYkg~l~-~g~~vaV~~~~~~~ 671 (694)
..||+| +||.||+|+-. +|..||||+.....
T Consensus 31 ~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~ 64 (389)
T 3gni_B 31 TVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEA 64 (389)
T ss_dssp EEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGG
T ss_pred ecccCCcCCceEEEEEEEcCCCCEEEEEEecccc
Confidence 689999 99999999976 68899999876543
No 407
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=81.35 E-value=0.14 Score=53.32 Aligned_cols=29 Identities=14% Similarity=0.173 Sum_probs=24.3
Q ss_pred cceeecccceeeehhh-hhhhhHHHHHHHh
Q psy3329 641 SFLTLGNFGLISVGVI-ILSAMVYFSFYAR 669 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~ 669 (694)
..||+|+||.||+|+- ..|..||||+...
T Consensus 32 ~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~ 61 (432)
T 3n9x_A 32 HLIGRGSYGYVYLAYDKNTEKNVAIKKVNR 61 (432)
T ss_dssp EEEEEETTEEEEEEEETTTTEEEEEEEECS
T ss_pred EEEeecCCEEEEEEEECCCCcEEEEEEeCc
Confidence 6899999999999975 4567899998754
No 408
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=81.10 E-value=0.13 Score=57.03 Aligned_cols=31 Identities=13% Similarity=0.221 Sum_probs=25.8
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHhhH
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHL 671 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~ 671 (694)
.+||+|+||.||+|+.. +|..||||+.....
T Consensus 347 ~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~ 378 (674)
T 3pfq_A 347 MVLGKGSFGKVMLSERKGTDELYAVKILKKDV 378 (674)
T ss_dssp EESSBTTTBCEEEEEESSSCCEEEEEEEEHHH
T ss_pred EEEccCCCEEEEEEEECCCCcEEEEEEEeccc
Confidence 68999999999999865 46689999876543
No 409
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=81.00 E-value=0.14 Score=52.27 Aligned_cols=29 Identities=21% Similarity=0.220 Sum_probs=24.4
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHh
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYAR 669 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~ 669 (694)
..||+|+||.||+|+-. +|.+||||+...
T Consensus 57 ~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~ 86 (387)
T 1kob_A 57 EELGSGAFGVVHRCVEKATGRVFVAKFINT 86 (387)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEEEEEC
T ss_pred EEEecCCCEEEEEEEECCCCCEEEEEEecc
Confidence 67999999999999865 577899988654
No 410
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=80.95 E-value=0.18 Score=48.66 Aligned_cols=28 Identities=18% Similarity=0.210 Sum_probs=24.5
Q ss_pred cceeecccceeeehhhhhhhhHHHHHHHh
Q psy3329 641 SFLTLGNFGLISVGVIILSAMVYFSFYAR 669 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~ 669 (694)
..||+|+||.||+|+. .|..||||+...
T Consensus 27 ~~lg~G~~g~V~~~~~-~~~~vavK~~~~ 54 (278)
T 1byg_A 27 QTIGKGEFGDVMLGDY-RGNKVAVKCIKN 54 (278)
T ss_dssp EEEEECSSCEEEEEEE-TTEEEEEEECCC
T ss_pred eEEecCCCceEEEEEE-cCCEEEEEEecc
Confidence 6899999999999987 588999998754
No 411
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=80.92 E-value=0.14 Score=49.73 Aligned_cols=30 Identities=20% Similarity=0.168 Sum_probs=17.4
Q ss_pred cceeecccceeeehhhh--hhh--hHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVII--LSA--MVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~--~g~--~vaV~~~~~~ 670 (694)
..||+|+||.||+|+.. +|. .||||+....
T Consensus 24 ~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~ 57 (291)
T 1u46_A 24 EKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPD 57 (291)
T ss_dssp EECC----CCCEEEEEECTTSCEEEEEEEC----
T ss_pred eeecCCCceeEEEEEeccCCCceeEEEEEEEccC
Confidence 67999999999999864 333 6899987654
No 412
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=80.41 E-value=0.13 Score=50.61 Aligned_cols=26 Identities=19% Similarity=0.209 Sum_probs=20.3
Q ss_pred cceeecccceeeehhhhhhhhHHHHHHH
Q psy3329 641 SFLTLGNFGLISVGVIILSAMVYFSFYA 668 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~ 668 (694)
..||+|+||.||+|+.... ||||+..
T Consensus 42 ~~lG~G~~g~Vy~~~~~~~--~avk~~k 67 (307)
T 3lb7_A 42 TRIGSGSFGTVYKGKWHGD--VAVKILK 67 (307)
T ss_dssp EEEEECSSCEEEEEESSSE--EEEEECC
T ss_pred eEecCCCCeEEEEEEECCE--EEEEEEe
Confidence 6899999999999987543 5666544
No 413
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=80.34 E-value=0.14 Score=51.92 Aligned_cols=30 Identities=13% Similarity=0.031 Sum_probs=25.0
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHhh
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYARH 670 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~ 670 (694)
..||+|+||.||+|+-. +|..||||+....
T Consensus 35 ~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~ 65 (362)
T 2bdw_A 35 EELGKGAFSVVRRCVHKTTGLEFAAKIINTK 65 (362)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEEEEETT
T ss_pred eEEecCCCeEEEEEEECCCCCEEEEEEEEcc
Confidence 68999999999999864 5779999987543
No 414
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=79.98 E-value=0.14 Score=51.01 Aligned_cols=30 Identities=17% Similarity=0.144 Sum_probs=23.0
Q ss_pred ccceeecccceeeehhhhh-hh--hHHHHHHHh
Q psy3329 640 KSFLTLGNFGLISVGVIIL-SA--MVYFSFYAR 669 (694)
Q Consensus 640 ~~~iG~G~fG~VYkg~l~~-g~--~vaV~~~~~ 669 (694)
...||+|+||.||+|+... |. .||||....
T Consensus 30 ~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~ 62 (327)
T 1fvr_A 30 QDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKE 62 (327)
T ss_dssp EEEEECGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eeeeecCCCceEEEEEEccCCcccceeeeeecc
Confidence 4789999999999998754 44 347877654
No 415
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=78.96 E-value=0.18 Score=53.76 Aligned_cols=31 Identities=10% Similarity=0.000 Sum_probs=22.7
Q ss_pred cceeecccceeeehhhhh-hhhHHHHHHHhhH
Q psy3329 641 SFLTLGNFGLISVGVIIL-SAMVYFSFYARHL 671 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~-g~~vaV~~~~~~~ 671 (694)
..||+|+||.||+|+-.. |..||||+.....
T Consensus 42 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~ 73 (504)
T 3q5i_A 42 RKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQ 73 (504)
T ss_dssp EEEEC--CEEEEEEEETTTCCEEEEEEEEC--
T ss_pred eEecccCCeEEEEEEECCCCcEEEEEEEEhhh
Confidence 689999999999998754 5689999876544
No 416
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=76.83 E-value=0.2 Score=53.20 Aligned_cols=31 Identities=10% Similarity=-0.006 Sum_probs=21.6
Q ss_pred cceeecccceeeehhhh-hhhhHHHHHHHhhH
Q psy3329 641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHL 671 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~ 671 (694)
..||+|+||.||+|+-. .|..||||+.....
T Consensus 43 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~ 74 (494)
T 3lij_A 43 KKLGSGAYGEVLLCRDKVTHVERAIKIIRKTS 74 (494)
T ss_dssp EEEECC---EEEEEEETTTCCEEEEEEEEC--
T ss_pred eEEecCCCEEEEEEEECCCCcEEEEEEEeccc
Confidence 68999999999999865 56789999875443
No 417
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*
Probab=76.79 E-value=0.24 Score=47.73 Aligned_cols=29 Identities=10% Similarity=0.057 Sum_probs=23.2
Q ss_pred cceeecccceeeehhhhh-hhhHHHHHHHh
Q psy3329 641 SFLTLGNFGLISVGVIIL-SAMVYFSFYAR 669 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~-g~~vaV~~~~~ 669 (694)
+.||+|+||.||+|+-.. +..||||....
T Consensus 15 ~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~ 44 (277)
T 3f3z_A 15 NTIGRGSWGEVKIAVQKGTRIRRAAKKIPK 44 (277)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEEEEEG
T ss_pred eEEeecCCEEEEEEEeCCCCcEEEEEeehh
Confidence 689999999999998755 34788887654
No 418
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=76.78 E-value=0.25 Score=48.73 Aligned_cols=29 Identities=14% Similarity=0.114 Sum_probs=20.7
Q ss_pred cceeecccceeeehhhhh-hhhHHHHHHHh
Q psy3329 641 SFLTLGNFGLISVGVIIL-SAMVYFSFYAR 669 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~-g~~vaV~~~~~ 669 (694)
..||.|+||.||+|+... |..||||+...
T Consensus 35 ~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~ 64 (314)
T 3com_A 35 EKLGEGSYGSVYKAIHKETGQIVAIKQVPV 64 (314)
T ss_dssp EECC----CEEEEEEETTTCCEEEEEEEET
T ss_pred eeeccCCCeEEEEEEECCCCCEEEEEecCc
Confidence 679999999999998754 78999997754
No 419
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=73.97 E-value=0.2 Score=49.57 Aligned_cols=29 Identities=17% Similarity=0.163 Sum_probs=23.0
Q ss_pred ccceeecccceeeehhhhhhhhHHHHHHHhh
Q psy3329 640 KSFLTLGNFGLISVGVIILSAMVYFSFYARH 670 (694)
Q Consensus 640 ~~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~ 670 (694)
...||+|+||.||+|+... .||||+....
T Consensus 38 ~~~lg~G~~g~V~~~~~~~--~~avk~~~~~ 66 (319)
T 2y4i_B 38 GELIGKGRFGQVYHGRWHG--EVAIRLIDIE 66 (319)
T ss_dssp CCBCCCSSSSEEEEEEESS--SEEEEECCCC
T ss_pred eeEeccCCceEEEEEEEcC--eEEEEEeecC
Confidence 3789999999999998743 4788776543
No 420
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=63.15 E-value=0.97 Score=48.37 Aligned_cols=27 Identities=15% Similarity=-0.006 Sum_probs=15.3
Q ss_pred ccceeecccceeeehhhhhhhhHHHHHH
Q psy3329 640 KSFLTLGNFGLISVGVIILSAMVYFSFY 667 (694)
Q Consensus 640 ~~~iG~G~fG~VYkg~l~~g~~vaV~~~ 667 (694)
.++||+|+||.||+|+. .|..||+|..
T Consensus 341 ~~~LG~G~fg~Vy~~~~-~~~~~~~k~~ 367 (540)
T 3en9_A 341 EHLIGKGAEADIKRDSY-LDFDVIIKER 367 (540)
T ss_dssp -------CCEEEEEEEC-SSCEEEEEEE
T ss_pred CCEEeeCCCEEEEEEEE-CCCeEEEEEE
Confidence 46899999999999966 4556777654
No 421
>3d1u_A Putative fructosamine-3-kinase; YP_290396.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Thermobifida fusca} PDB: 3f7w_A
Probab=35.82 E-value=3.5 Score=39.80 Aligned_cols=27 Identities=0% Similarity=-0.249 Sum_probs=24.5
Q ss_pred cceeecccceeeehhhhhhhhHHHHHH
Q psy3329 641 SFLTLGNFGLISVGVIILSAMVYFSFY 667 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~ 667 (694)
+.||.|+++.||+.++.||..++||+.
T Consensus 21 ~~l~gG~~n~vy~v~~~dG~~~vvK~~ 47 (288)
T 3d1u_A 21 AERGHSHRWHLYRVELADGTPLFVKAL 47 (288)
T ss_dssp EEEEEETTEEEEEEEETTSCEEEEEEC
T ss_pred eeeCCcchhheEEEEeCCCCeEEEEec
Confidence 568999999999999999998999884
No 422
>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}
Probab=21.41 E-value=11 Score=36.09 Aligned_cols=28 Identities=0% Similarity=-0.236 Sum_probs=24.8
Q ss_pred cceeecccceeeehhhhhhhhHHHHHHH
Q psy3329 641 SFLTLGNFGLISVGVIILSAMVYFSFYA 668 (694)
Q Consensus 641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~ 668 (694)
.-+|.|..+.||+-++.||+.|+||+..
T Consensus 21 ~~~g~G~~~~vyrv~l~DG~~~~vK~~~ 48 (288)
T 3f7w_A 21 AERGHSHRWHLYRVELADGTPLFVKALP 48 (288)
T ss_dssp EEEEEETTEEEEEEEETTSCEEEEEECC
T ss_pred EecCCCCCeEEEEEEECCCCEEEEEEeC
Confidence 5679999999999999999989998754
Done!