RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3329
(694 letters)
>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease
inhibitor (RI)-like subfamily. LRRs are 20-29 residue
sequence motifs present in many proteins that
participate in protein-protein interactions and have
different functions and cellular locations. LRRs
correspond to structural units consisting of a beta
strand (LxxLxLxxN/CxL conserved pattern) and an alpha
helix. This alignment contains 12 strands corresponding
to 11 full repeats, consistent with the extent observed
in the subfamily acting as Ran GTPase Activating
Proteins (RanGAP1).
Length = 319
Score = 70.1 bits (172), Expect = 6e-13
Identities = 71/291 (24%), Positives = 97/291 (33%), Gaps = 53/291 (18%)
Query: 83 VFDPLTSLEYLMLNRCNLTYISPSA-FDNLNH---LKTLELSQNKLKSHIDWTLVLG--- 135
+ L L+ L L L + A L LK L LS N+ L
Sbjct: 18 LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGL 77
Query: 136 -NLGKLDTLDLRQSGISNLPDNV-----FANNTWLRNLNLAENELIDLD---VATTLGQN 186
L LDL + + PD ++ L+ L L N L D +A L
Sbjct: 78 TKGCGLQELDLSDNALG--PDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDL 135
Query: 187 LVHLDSLDLSNCHLKGPLSED---AFVNATKLRTLYLSGNPLS---AADLSVALKPLTKL 240
L+ L L L+G E A L+ L L+ N + L+ LK L
Sbjct: 136 PPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNL 195
Query: 241 HRLSLRNCGL----SRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYS 296
L L N GL + A T L+ L++ N L DA A L +L +
Sbjct: 196 EVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL--ASALLSPN---- 249
Query: 297 NLQRISRSTFLKMTSLKTLILSGNKLE-----TLESGLFQNLTHLSVLELN 342
SL TL LS N + L L + + L L+L
Sbjct: 250 -------------ISLLTLSLSCNDITDDGAKDLAEVLAEKESLL-ELDLR 286
Score = 60.8 bits (148), Expect = 6e-10
Identities = 63/262 (24%), Positives = 84/262 (32%), Gaps = 44/262 (16%)
Query: 57 PQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLT---SLEYLMLNRCNLTYISPSAF----- 108
Q T L +LDLS N L GV + L SL+ L LN L
Sbjct: 74 LQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLG-DRGLRLLAKGL 132
Query: 109 -DNLNHLKTLELSQNKL--KSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLR 165
D L+ L L +N+L S L L L+L +GI
Sbjct: 133 KDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG-------------- 178
Query: 166 NLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPL 225
+ + L NL LD + + + L L L N L
Sbjct: 179 -----DAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL 233
Query: 226 S---AADLSVALK-PLTKLHRLSLRNCGLSRLPANTFHR----FTCLQELDISHNPLIDA 277
+ AA L+ AL P L LSL ++ A L ELD+ N +
Sbjct: 234 TDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293
Query: 278 -----FTALLSPLESLEHLDMG 294
+LL P LE L +
Sbjct: 294 GAQLLAESLLEPGNELESLWVK 315
Score = 59.7 bits (145), Expect = 2e-09
Identities = 48/177 (27%), Positives = 63/177 (35%), Gaps = 19/177 (10%)
Query: 215 LRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTF---HRFTCLQELDISH 271
L P L L L L L + L R + LQEL +++
Sbjct: 58 LSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNN 117
Query: 272 NPLIDAFT-----ALLSPLESLEHLDMGYSNLQRIS----RSTFLKMTSLKTLILSGNKL 322
N L D L +LE L +G + L+ S LK L L+ N +
Sbjct: 118 NGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGI 177
Query: 323 -----ETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENY-TYPDLEELRLSGNPL 373
L GL N +L VL+LNN GLT + E + LE L L N L
Sbjct: 178 GDAGIRALAEGLKAN-CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL 233
Score = 52.7 bits (127), Expect = 3e-07
Identities = 68/270 (25%), Positives = 98/270 (36%), Gaps = 55/270 (20%)
Query: 263 CLQELDISHNPL----IDAFTALLSPLESLEHLDMGYSNLQRISRST------FLKMTSL 312
CLQ L + N L A + L P SL+ L + + RI R K L
Sbjct: 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGL 83
Query: 313 KTLILSGNKLETLESGLFQNLTHLSVLE---LNNCGL----TRLNETVFHENYTYPDLEE 365
+ L LS N L G+ ++L S L+ LNN GL RL + P LE+
Sbjct: 84 QELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLP--PALEK 141
Query: 366 LRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLS 425
L L N L S + L N DL+EL L+
Sbjct: 142 LVLGRNRLEG--ASCEA----------------LAKALRAN----------RDLKELNLA 173
Query: 426 GNPLHVLPTGNLLP--PQLSRLRSLDLSRCKI----DYLPPNVFNNTRNITSLNLANNNL 479
N + L L LDL+ + + +++ LNL +NNL
Sbjct: 174 NNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL 233
Query: 480 SM--TSELSFQFLDVLLELESLDLSNNNLT 507
+ + L+ L + L +L LS N++T
Sbjct: 234 TDAGAAALASALLSPNISLLTLSLSCNDIT 263
Score = 45.0 bits (107), Expect = 7e-05
Identities = 37/128 (28%), Positives = 47/128 (36%), Gaps = 13/128 (10%)
Query: 415 TYPDLEELRLSGNPLHVLPTGNLLPPQ----LSRLRSLDLSRCKIDYLPPNVFNNTRNIT 470
P L+EL LS N +P G Q L+ LDLS + V + +
Sbjct: 49 PQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSS 108
Query: 471 SL---NLANNNLSMTSE--LSFQFLDVLLELESLDLSNNNLTHISPT----VLRHNRAIT 521
SL L NN L L+ D+ LE L L N L S LR NR +
Sbjct: 109 SLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLK 168
Query: 522 SIKLVGNP 529
+ L N
Sbjct: 169 ELNLANNG 176
Score = 38.9 bits (91), Expect = 0.007
Identities = 32/125 (25%), Positives = 48/125 (38%), Gaps = 12/125 (9%)
Query: 417 PDLEELRLSGNPLHVLPTGNL---LPPQLSRLRSLDLSRCKIDYLP----PNVFNNTRNI 469
L+EL+L+ N L L L L L L R +++ R++
Sbjct: 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDL 167
Query: 470 TSLNLANNNLSMTS-ELSFQFLDVLLELESLDLSNNNLTHISPT----VLRHNRAITSIK 524
LNLANN + + L LE LDL+NN LT + L +++ +
Sbjct: 168 KELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLN 227
Query: 525 LVGNP 529
L N
Sbjct: 228 LGDNN 232
>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein
kinase; Provisional.
Length = 968
Score = 69.1 bits (169), Expect = 5e-12
Identities = 136/525 (25%), Positives = 201/525 (38%), Gaps = 77/525 (14%)
Query: 17 PGLITINLNANPIQ-PVEGA-FLVARSLLYLYMQECTLSKINPQ-FFTNLTTLNK----- 68
P + TINL+ N + P+ F + SL YL + + P+ NL TL+
Sbjct: 93 PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNML 152
Query: 69 ----------------LDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLN 112
LDL GN L P LTSLE+L L L P +
Sbjct: 153 SGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMK 212
Query: 113 HLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAEN 172
LK + L N L I + +G L L+ LDL + ++ + N L+ L L +N
Sbjct: 213 SLKWIYLGYNNLSGEIPYE--IGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN 270
Query: 173 ELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSV 232
+L + L L SLDLS+ L G + E + L L+L N + + V
Sbjct: 271 KLSGPIPPSIFS--LQKLISLDLSDNSLSGEIPE-LVIQLQNLEILHLFSNNFTGK-IPV 326
Query: 233 ALKPLTKLHRLSLRNCGLS-RLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHL 291
AL L +L L L + S +P N + L LD+S N L L +L L
Sbjct: 327 ALTSLPRLQVLQLWSNKFSGEIPKN-LGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKL 385
Query: 292 DMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLT-RLN 350
+ ++L+ + SL+ + L N F L + L+++N L R+N
Sbjct: 386 ILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRIN 445
Query: 351 ETVFHENYTYPDLEELRLSGNP-LHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETV 409
+ P L+ L L+ N LPDS + +
Sbjct: 446 S----RKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENL--------------------- 480
Query: 410 FHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNI 469
DL + SG +P LS L L LS K+ P+ ++ + +
Sbjct: 481 --------DLSRNQFSG----AVPRKLG---SLSELMQLKLSENKLSGEIPDELSSCKKL 525
Query: 470 TSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVL 514
SL+L++N LS SF + V L LDLS N L+ P L
Sbjct: 526 VSLDLSHNQLSGQIPASFSEMPV---LSQLDLSQNQLSGEIPKNL 567
Score = 65.6 bits (160), Expect = 7e-11
Identities = 116/463 (25%), Positives = 191/463 (41%), Gaps = 64/463 (13%)
Query: 110 NLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGIS-NLPDNVFANNTWLRNLN 168
N + + +++LS + I + + L + T++L + +S +PD++F ++ LR LN
Sbjct: 67 NSSRVVSIDLSGKNISGKI--SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLN 124
Query: 169 LAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAA 228
L+ N + ++ +L++LDLSN L G + D + L+ L L GN L
Sbjct: 125 LSNNNF----TGSIPRGSIPNLETLDLSNNMLSGEIPNDIGS-FSSLKVLDLGGNVLVG- 178
Query: 229 DLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESL 288
+ +L LT L L+L + L + L+ + + +N L + L SL
Sbjct: 179 KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSL 238
Query: 289 EHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLE-TLESGLFQNLTHLSVLELNNCGLT 347
HLD+ Y+NL S+ + +L+ L L NKL + +F +L L L+L++ L+
Sbjct: 239 NHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLS 297
Query: 348 -RLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPT----QIWKNFDFLVIL 402
+ E V +LE L L N ++ ++P Q+W N I
Sbjct: 298 GEIPELVIQ----LQNLEILHLFSNNF----TGKIPVALTSLPRLQVLQLWSNKFSGEIP 349
Query: 403 FILNETVFHENYTYPDLEELRLSGN-PLHVLPTGNL-------------LPPQLSRLRSL 448
L + H N T DL L+G P + +GNL +P L RSL
Sbjct: 350 KNLGK---HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSL 406
Query: 449 DLSRCKIDYLP---PNVFNNTRNITSLNLANNNLSMTSEL------SFQFLDVLL----- 494
R + + P+ F + L+++NNNL S Q L +
Sbjct: 407 RRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFG 466
Query: 495 ---------ELESLDLSNNNLTHISPTVLRHNRAITSIKLVGN 528
LE+LDLS N + P L + +KL N
Sbjct: 467 GLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSEN 509
Score = 45.6 bits (108), Expect = 1e-04
Identities = 65/246 (26%), Positives = 100/246 (40%), Gaps = 39/246 (15%)
Query: 57 PQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKT 116
P+ + L KL L N L P SL + L + + PS F L +
Sbjct: 373 PEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYF 432
Query: 117 LELSQNKLKSHID---WTLVLGNLGKLDTLDL-RQSGISNLPDNVFANNTWLRNLNLAEN 172
L++S N L+ I+ W ++ L L L R LPD+ + L NL+L+ N
Sbjct: 433 LDISNNNLQGRINSRKW-----DMPSLQMLSLARNKFFGGLPDSFGSKR--LENLDLSRN 485
Query: 173 ELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSV 232
+ V LG +L L L LS L G + ++ + KL +L LS N LS
Sbjct: 486 QFSGA-VPRKLG-SLSELMQLKLSENKLSGEIPDE-LSSCKKLVSLDLSHNQLSG----- 537
Query: 233 ALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLD 292
++PA +F L +LD+S N L L +ESL ++
Sbjct: 538 -------------------QIPA-SFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVN 577
Query: 293 MGYSNL 298
+ +++L
Sbjct: 578 ISHNHL 583
Score = 39.4 bits (92), Expect = 0.008
Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 5/134 (3%)
Query: 10 DRRNLDNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKL 69
+ R D P L ++L N ++ L L + S P+ +L+ L +L
Sbjct: 445 NSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQL 504
Query: 70 DLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHID 129
LS N L P L L L+ L+ P++F + L L+LSQN+L I
Sbjct: 505 KLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIP 564
Query: 130 WTLVLGNLGKLDTL 143
NLG +++L
Sbjct: 565 -----KNLGNVESL 573
>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat.
Length = 60
Score = 59.1 bits (144), Expect = 2e-11
Identities = 29/59 (49%), Positives = 36/59 (61%)
Query: 66 LNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKL 124
L LDLS N L +I G F L +L+ L L+ NLT ISP AF L L++L+LS N L
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 53.7 bits (130), Expect = 2e-09
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 287 SLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGL 346
+L+ LD+ + L I F + +LK L LSGN L ++ F L L L+L+ L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 50.2 bits (121), Expect = 3e-08
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 419 LEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNN 478
L+ L LS N L V+P G L L+ LDLS + + P F+ ++ SL+L+ NN
Sbjct: 2 LKSLDLSNNRLTVIPDGAFK--GLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59
Query: 479 L 479
L
Sbjct: 60 L 60
Score = 47.9 bits (115), Expect = 2e-07
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 311 SLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSG 370
+LK+L LS N+L + G F+ L +L VL+L+ LT ++ F P L L LSG
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGL---PSLRSLDLSG 57
Query: 371 NPL 373
N L
Sbjct: 58 NNL 60
Score = 47.5 bits (114), Expect = 3e-07
Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 444 RLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSN 503
L+SLDLS ++ +P F N+ L+L+ NNL+ S +F L L SLDLS
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPS---LRSLDLSG 57
Query: 504 NNL 506
NNL
Sbjct: 58 NNL 60
Score = 47.2 bits (113), Expect = 3e-07
Identities = 23/59 (38%), Positives = 33/59 (55%)
Query: 264 LQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKL 322
L+ LD+S+N L L +L+ LD+ +NL IS F + SL++L LSGN L
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 46.4 bits (111), Expect = 7e-07
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 89 SLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQS 148
+L+ L L+ LT I AF L +LK L+LS N L I L L +LDL +
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPE-AFSGLPSLRSLDLSGN 58
Query: 149 GI 150
+
Sbjct: 59 NL 60
Score = 45.2 bits (108), Expect = 2e-06
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 468 NITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVG 527
N+ SL+L+NN L++ + +F+ L L+ LDLS NNLT ISP ++ S+ L G
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLP---NLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSG 57
Query: 528 NP 529
N
Sbjct: 58 NN 59
Score = 44.5 bits (106), Expect = 3e-06
Identities = 24/60 (40%), Positives = 28/60 (46%)
Query: 41 SLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNL 100
+L L + L+ I F L L LDLSGN L I P F L SL L L+ NL
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 41.8 bits (99), Expect = 3e-05
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 164 LRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGN 223
L++L+L+ N L + + L +L LDLS +L +S +AF LR+L LSGN
Sbjct: 2 LKSLDLSNNRLTVIPDGAF--KGLPNLKVLDLSGNNLTS-ISPEAFSGLPSLRSLDLSGN 58
Query: 224 PL 225
L
Sbjct: 59 NL 60
Score = 40.6 bits (96), Expect = 8e-05
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 139 KLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNC 198
L +LDL + ++ +PD F L+ L+L+ N L + L L SLDLS
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSIS-PEAF-SGLPSLRSLDLSGN 58
Query: 199 HL 200
+L
Sbjct: 59 NL 60
Score = 38.7 bits (91), Expect = 4e-04
Identities = 24/86 (27%), Positives = 32/86 (37%), Gaps = 26/86 (30%)
Query: 189 HLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNC 248
+L SLDLSN L + + AF L+ L LSGN
Sbjct: 1 NLKSLDLSNNRLTV-IPDGAFKGLPNLKVLDLSGNN------------------------ 35
Query: 249 GLSRLPANTFHRFTCLQELDISHNPL 274
L+ + F L+ LD+S N L
Sbjct: 36 -LTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 36.0 bits (84), Expect = 0.003
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 113 HLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAEN 172
+LK+L+LS N+L I L L LDL + ++++ F+ LR+L+L+ N
Sbjct: 1 NLKSLDLSNNRLT-VIPDG-AFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58
Query: 173 EL 174
L
Sbjct: 59 NL 60
Score = 34.4 bits (80), Expect = 0.013
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 18 GLITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPL 76
L +++L+ N + + GAF +L L + L+ I+P+ F+ L +L LDLSGN L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 26.4 bits (59), Expect = 8.8
Identities = 27/93 (29%), Positives = 33/93 (35%), Gaps = 34/93 (36%)
Query: 363 LEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEEL 422
L+ L LS N L V+PD F L P+L+ L
Sbjct: 2 LKSLDLSNNRLTVIPDGA---------------FKGL-----------------PNLKVL 29
Query: 423 RLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKI 455
LSGN L + L LRSLDLS +
Sbjct: 30 DLSGNNLTSISPEAFS--GLPSLRSLDLSGNNL 60
>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function
unknown].
Length = 394
Score = 61.1 bits (148), Expect = 8e-10
Identities = 94/328 (28%), Positives = 138/328 (42%), Gaps = 24/328 (7%)
Query: 60 FTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLEL 119
NL L LDL+ N LR + LT+L L L+ N+T I P ++LK L+L
Sbjct: 89 LLNLLPLPSLDLNLNRLRSNISELL-ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDL 147
Query: 120 SQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDV 179
S NK++S L NL L LDL + +S+LP + +N + L NL+L+ N++ DL
Sbjct: 148 SDNKIESLPSP---LRNLPNLKNLDLSFNDLSDLP-KLLSNLSNLNNLDLSGNKISDLPP 203
Query: 180 ATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTK 239
L L L+ LDLSN + + N L L LS N L S+ L+
Sbjct: 204 EIEL---LSALEELDLSNNSII--ELLSSLSNLKNLSGLELSNNKLEDLPESIGN--LSN 256
Query: 240 LHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQ 299
L L L N +S + + T L+ELD+S N L +A + L LE L
Sbjct: 257 LETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIALLLLLLE-------LLL 307
Query: 300 RISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYT 359
+ + L +++L+ N L E+ + L+ L L N L + Y
Sbjct: 308 NLLLTLKALELKLNSILLNNNILSNGETSSPEALSILESLN-NLWTLDNALDESNLNRYI 366
Query: 360 YPDLEELR--LSGNPLHVLPDSTKQYSM 385
+ + L HV K
Sbjct: 367 VKNPNAIGSLLDLVKKHVNQLLEKVNYN 394
Score = 50.4 bits (120), Expect = 2e-06
Identities = 92/383 (24%), Positives = 146/383 (38%), Gaps = 32/383 (8%)
Query: 121 QNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVA 180
+N LKS + + L QS N PD+ + + L
Sbjct: 5 ENLLKSALSSNTLREVLSSNTYHTTPQSINLNFPDSNLESV------AVNRLALNLSSNT 58
Query: 181 TTLGQN-LVHLDSLDLSNCHLKGPLSE-DAFVNATKLRTLYLSGNPLSAADLSVALKPLT 238
L + L L SLDL + L + +N L +L L+ N L + L LT
Sbjct: 59 LLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNIS--ELLELT 116
Query: 239 KLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNL 298
L L L N ++ +P + L+ELD+S N + + L + L +L++LD+ +++L
Sbjct: 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRN-LPNLKNLDLSFNDL 175
Query: 299 QRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENY 358
+ + +++L L LSGNK+ L + L+ L L+L+N + L ++ +
Sbjct: 176 SDLPKL-LSNLSNLNNLDLSGNKISDLPP-EIELLSALEELDLSNNSIIELLSSLSNLKN 233
Query: 359 TYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENY--TY 416
L L LS N L +P I N L L + N + + +
Sbjct: 234 ----LSGLELSNNKL------------EDLPESI-GNLSNLETLDLSNNQISSISSLGSL 276
Query: 417 PDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLAN 476
+L EL LSGN L L L L L K L N NI S +
Sbjct: 277 TNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNSILLNNNILSNGETS 336
Query: 477 NNLSMTSELSFQFLDVLLELESL 499
+ +++ S L L
Sbjct: 337 SPEALSILESLNNLWTLDNALDE 359
Score = 46.5 bits (110), Expect = 3e-05
Identities = 49/192 (25%), Positives = 82/192 (42%), Gaps = 13/192 (6%)
Query: 17 PGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPL 76
L N N I P+ G L L + + NL LDLS N L
Sbjct: 119 TSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLK---NLDLSFNDL 175
Query: 77 RIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGN 136
+ + + L++L L L+ ++ + P + L+ L+ L+LS N + + L N
Sbjct: 176 SDLPKLLSN-LSNLNNLDLSGNKISDLPPEI-ELLSALEELDLSNNSIIELL---SSLSN 230
Query: 137 LGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLS 196
L L L+L + + +LP+++ N + L L+L+ N++ + +L +L LDLS
Sbjct: 231 LKNLSGLELSNNKLEDLPESI-GNLSNLETLDLSNNQISSISSLG----SLTNLRELDLS 285
Query: 197 NCHLKGPLSEDA 208
L L A
Sbjct: 286 GNSLSNALPLIA 297
Score = 38.8 bits (90), Expect = 0.009
Identities = 60/211 (28%), Positives = 90/211 (42%), Gaps = 28/211 (13%)
Query: 310 TSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLS 369
L +L L+ N+L + S L LT+L+ L+L+N +T + + +L+EL LS
Sbjct: 93 LPLPSLDLNLNRLRSNISELL-ELTNLTSLDLDNNNITDIPPLIGLLK---SNLKELDLS 148
Query: 370 GNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFH---ENYTYPDLEELRLSG 426
N + ++P+ + N L L + + +L L LSG
Sbjct: 149 DNKI------------ESLPSPLR-NLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSG 195
Query: 427 NPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELS 486
N + LP L S L LDLS I L ++ N L L+NN L E
Sbjct: 196 NKISDLPPEIELL---SALEELDLSNNSIIELLSSLSNLKNLSG-LELSNNKL----EDL 247
Query: 487 FQFLDVLLELESLDLSNNNLTHISPTVLRHN 517
+ + L LE+LDLSNN ++ IS N
Sbjct: 248 PESIGNLSNLETLDLSNNQISSISSLGSLTN 278
>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P. syringae 6; Provisional.
Length = 1153
Score = 56.4 bits (136), Expect = 4e-08
Identities = 84/322 (26%), Positives = 138/322 (42%), Gaps = 39/322 (12%)
Query: 41 SLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNL 100
+L+ L MQ L K+ +LT L +DL G+ + E T+LE L L+ C+
Sbjct: 612 NLVKLQMQGSKLEKL-WDGVHSLTGLRNIDLRGSK-NLKEIPDLSMATNLETLKLSDCSS 669
Query: 101 TYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLG-NLGKLDTLDLRQ-SGISNLPDNVF 158
PS+ LN L+ L++S+ + +++ L G NL L L+L S + + PD +
Sbjct: 670 LVELPSSIQYLNKLEDLDMSRCE---NLE-ILPTGINLKSLYRLNLSGCSRLKSFPD-IS 724
Query: 159 ANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLD-LSNCHLKG--------PLSEDAF 209
N +WL +D NL L++LD L C +K PL+
Sbjct: 725 TNISWL---------DLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMT 774
Query: 210 VNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNC-GLSRLPANTFHRFTCLQELD 268
+ + L L+LS P S +L +++ L KL L + NC L LP T L+ LD
Sbjct: 775 MLSPSLTRLFLSDIP-SLVELPSSIQNLHKLEHLEIENCINLETLP--TGINLESLESLD 831
Query: 269 ISHNPLIDAFTALLSPLESL-------EHLDMGYSNLQRISRSTFLKMTSLKTLILSGNK 321
+S + F + + + L E + +S +L+ + L+ +K
Sbjct: 832 LSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISK 891
Query: 322 LETLESGLFQNLTHLSVLELNN 343
L+ LE+ F + L+ N
Sbjct: 892 LKHLETVDFSDCGALTEASWNG 913
Score = 40.6 bits (95), Expect = 0.003
Identities = 87/305 (28%), Positives = 128/305 (41%), Gaps = 44/305 (14%)
Query: 105 PSAFDNLNH-LKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTW 163
P FD L L+ L + L+ + NL KL ++ S + L D V + T
Sbjct: 581 PEGFDYLPPKLRLLRWDKYPLR-CMPSNFRPENLVKLQ---MQGSKLEKLWDGVHSL-TG 635
Query: 164 LRNLNL--AEN--ELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLY 219
LRN++L ++N E+ DL +AT +L++L LS+C L + KL L
Sbjct: 636 LRNIDLRGSKNLKEIPDLSMAT-------NLETLKLSDCSSLVELPS-SIQYLNKLEDLD 687
Query: 220 LSG-NPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRF-TCLQELDISHNPLIDA 277
+S L + LK L+RL+L C SRL +F T + LD+ + +
Sbjct: 688 MSRCENLEILPTGINLK---SLYRLNLSGC--SRL--KSFPDISTNISWLDLDETAIEEF 740
Query: 278 FTALLSPLESLEHLDMGYSNLQRI-----SRSTFLKMT--SLKTLILSGN-KLETLESGL 329
+ L LE+L+ L + +++ + + M SL L LS L L S
Sbjct: 741 PSNL--RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS- 797
Query: 330 FQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSG-NPLHVLPD-STKQYSMRT 387
QNL L LE+ NC +N LE L LSG + L PD ST +
Sbjct: 798 IQNLHKLEHLEIENC----INLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNL 853
Query: 388 IPTQI 392
T I
Sbjct: 854 SRTGI 858
>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional.
Length = 623
Score = 42.1 bits (99), Expect = 0.001
Identities = 25/80 (31%), Positives = 39/80 (48%)
Query: 243 LSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRIS 302
L L N GL N + LQ +++S N + L + SLE LD+ Y++
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 303 RSTFLKMTSLKTLILSGNKL 322
+ ++TSL+ L L+GN L
Sbjct: 483 PESLGQLTSLRILNLNGNSL 502
Score = 37.9 bits (88), Expect = 0.018
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 105 PSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWL 164
P+ L HL+++ LS N ++ +I + LG++ L+ LDL + + T L
Sbjct: 435 PNDISKLRHLQSINLSGNSIRGNIPPS--LGSITSLEVLDLSYNSFNGSIPESLGQLTSL 492
Query: 165 RNLNLAENELIDLDVATTLGQNLVHLDSLDLSN 197
R LNL N L V LG L+H S + ++
Sbjct: 493 RILNLNGNSLSG-RVPAALGGRLLHRASFNFTD 524
Score = 34.8 bits (80), Expect = 0.18
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 187 LVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLR 246
L HL S++LS ++G + + + T L L LS N + + + +L LT L L+L
Sbjct: 441 LRHLQSINLSGNSIRGNIPP-SLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNLN 498
Query: 247 NCGLS-RLPA 255
LS R+PA
Sbjct: 499 GNSLSGRVPA 508
Score = 30.2 bits (68), Expect = 4.3
Identities = 22/68 (32%), Positives = 32/68 (47%)
Query: 57 PQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKT 116
P + L L ++LSGN +R P +TSLE L L+ + P + L L+
Sbjct: 435 PNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRI 494
Query: 117 LELSQNKL 124
L L+ N L
Sbjct: 495 LNLNGNSL 502
Score = 29.0 bits (65), Expect = 9.7
Identities = 19/51 (37%), Positives = 25/51 (49%)
Query: 57 PQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSA 107
P ++T+L LDLS N P LTSL L LN +L+ P+A
Sbjct: 459 PPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAA 509
>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1. Amn1
has been functionally characterized in Saccharomyces
cerevisiae as a component of the Antagonist of MEN
pathway (AMEN). The AMEN network is activated by MEN
(mitotic exit network) via an active Cdc14, and in turn
switches off MEN. Amn1 constitutes one of the
alternative mechanisms by which MEN may be disrupted.
Specifically, Amn1 binds Tem1 (Termination of M-phase, a
GTPase that belongs to the RAS superfamily), and
disrupts its association with Cdc15, the primary
downstream target. Amn1 is a leucine-rich repeat (LRR)
protein, with 12 repeats in the S. cerevisiae ortholog.
As a negative regulator of the signal transduction
pathway MEN, overexpression of AMN1 slows the growth of
wild type cells. The function of the vertebrate members
of this family has not been determined experimentally,
they have fewer LRRs that determine the extent of this
model.
Length = 226
Score = 40.4 bits (95), Expect = 0.001
Identities = 46/177 (25%), Positives = 70/177 (39%), Gaps = 35/177 (19%)
Query: 140 LDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNC- 198
L+ L+L IS+ P + +N L+ L L ++LID + L Q+ +L LDL C
Sbjct: 30 LEWLELYMCPISDPPLDQLSNCNKLKKLILPGSKLIDDEGLIALAQSCPNLQVLDLRACE 89
Query: 199 ------------------------HLKGPLSEDAFV-----NATKLRTLYLSGNPLSAAD 229
H G L D + N T L+T+ +G ++
Sbjct: 90 NITDSGIVALATNCPKLQTINLGRHRNGHLITDVSLSALGKNCTFLQTVGFAGCDVTDKG 149
Query: 230 L-SVALKPLTKLHRLSLRNCGL---SRLPAN-TFHRFTCLQELDISHNPLIDAFTAL 281
+ +A L RLSL NC +PA + F L L+ PLI F+ +
Sbjct: 150 VWELASGCSKSLERLSLNNCRNLTDQSIPAILASNYFPNLSVLEFRGCPLITDFSRI 206
Score = 30.0 bits (68), Expect = 3.9
Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 443 SRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDL 501
S L L+L C I P + +N + L L + + E L+ LDL
Sbjct: 28 SGLEWLELYMCPISDPPLDQLSNCNKLKKLIL-PGSKLIDDEGLIALAQSCPNLQVLDL 85
>gnl|CDD|188093 TIGR00864, PCC, polycystin cation channel protein. The Polycystin
Cation Channel (PCC) Family (TC 1.A.5) Polycystin is a
huge protein of 4303aas. Its repeated leucine-rich (LRR)
segment is found in many proteins. It contains 16
polycystic kidney disease (PKD) domains, one
LDL-receptor class A domain, one C-type lectin family
domain, and 16-18 putative TMSs in positions between
residues 2200 and 4100. Polycystin-L has been shown to
be a cation (Na+, K+ and Ca2+) channel that is activated
by Ca2+. Two members of the PCC family (polycystin 1 and
2) are mutated in autosomal dominant polycystic kidney
disease, and polycystin-L is deleted in mice with renal
and retinal defects. Note: this model is restricted to
the amino half for technical reasons.
Length = 2740
Score = 41.2 bits (96), Expect = 0.002
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 500 DLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEWATREKG 548
D+SNN ++ I + + ++ I L GNP++CDC +A + WA EKG
Sbjct: 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWA-EEKG 48
Score = 32.0 bits (72), Expect = 1.5
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 6/39 (15%)
Query: 317 LSGNKLETLESGLFQNLTHLSVLELN------NCGLTRL 349
+S NK+ T+E G+ NL +LS ++L+ +CGL RL
Sbjct: 2 ISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARL 40
>gnl|CDD|205486 pfam13306, LRR_5, Leucine rich repeats (6 copies). This family
includes a number of leucine rich repeats. This family
contains a large number of BSPA-like surface antigens
from Trichomonas vaginalis.
Length = 128
Score = 37.9 bits (89), Expect = 0.003
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 51 TLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDN 110
+++ I F+ T+L + L + L I F +SL + + +LT I AF N
Sbjct: 21 SVTSIGEYAFSGCTSLKSITLPSS-LTSIGSYAFYNCSSLTSITIP-SSLTSIGEYAFSN 78
Query: 111 LNHLKTLELSQN 122
+ L ++ + N
Sbjct: 79 CSSLTSITIPSN 90
Score = 33.7 bits (78), Expect = 0.094
Identities = 15/76 (19%), Positives = 35/76 (46%), Gaps = 8/76 (10%)
Query: 99 NLTYISPSAFDNLNHLKTLELSQN--KLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDN 156
++T I AF LK++ L + + S+ N L ++ + S ++++ +
Sbjct: 21 SVTSIGEYAFSGCTSLKSITLPSSLTSIGSYA-----FYNCSSLTSITI-PSSLTSIGEY 74
Query: 157 VFANNTWLRNLNLAEN 172
F+N + L ++ + N
Sbjct: 75 AFSNCSSLTSITIPSN 90
Score = 29.8 bits (68), Expect = 1.9
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 296 SNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVF 354
S++ I F TSLK++ L + L ++ S F N + L+ + + + LT + E F
Sbjct: 20 SSVTSIGEYAFSGCTSLKSITLP-SSLTSIGSYAFYNCSSLTSITIPS-SLTSIGEYAF 76
Score = 29.8 bits (68), Expect = 2.0
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 287 SLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGL 346
SL + + S+L I F +SL ++ + + L T+ S F N L + + + +
Sbjct: 58 SLTSITIP-SSLTSIGEYAFSNCSSLTSITIP-SNLTTIGSYAFSN-CSLKSITIPS-SV 113
Query: 347 TRLNETVF 354
T + + F
Sbjct: 114 TTIGDYAF 121
>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies). Leucine rich
repeats are short sequence motifs present in a number of
proteins with diverse functions and cellular locations.
These repeats are usually involved in protein-protein
interactions. Each Leucine Rich Repeat is composed of a
beta-alpha unit. These units form elongated non-globular
structures. Leucine Rich Repeats are often flanked by
cysteine rich domains.
Length = 43
Score = 32.8 bits (76), Expect = 0.033
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 310 TSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNE 351
T+L+TL LS N++ L NL +L L+L+ +T L+
Sbjct: 1 TNLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLSP 40
Score = 32.5 bits (75), Expect = 0.041
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 88 TSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKS 126
T+LE L L+ +T + P NL +L+TL+LS NK+
Sbjct: 1 TNLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITD 37
Score = 31.7 bits (73), Expect = 0.075
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 468 NITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISP 511
N+ +L+L+NN ++ L L LE+LDLS N +T +SP
Sbjct: 2 NLETLDLSNNQIT-----DLPPLSNLPNLETLDLSGNKITDLSP 40
Score = 31.7 bits (73), Expect = 0.077
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 213 TKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPA 255
T L TL LS N ++ DL L L L L L ++ L
Sbjct: 1 TNLETLDLSNNQIT--DLP-PLSNLPNLETLDLSGNKITDLSP 40
Score = 30.5 bits (70), Expect = 0.20
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 64 TTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISP 105
T L LDLS N + + P L +LE L L+ +T +SP
Sbjct: 1 TNLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLSP 40
Score = 30.5 bits (70), Expect = 0.22
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 444 RLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELS 486
L +LDLS +I LPP +N N+ +L+L+ N ++ S LS
Sbjct: 2 NLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLSPLS 42
Score = 30.5 bits (70), Expect = 0.22
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 238 TKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLID 276
T L L L N ++ LP L+ LD+S N + D
Sbjct: 1 TNLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITD 37
Score = 30.2 bits (69), Expect = 0.27
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 287 SLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLES 327
+LE LD+ + + + + +L+TL LSGNK+ L
Sbjct: 2 NLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLSP 40
Score = 28.6 bits (65), Expect = 0.86
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 139 KLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDV 179
L+TLDL + I++LP +N L L+L+ N++ DL
Sbjct: 2 NLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLSP 40
Score = 28.2 bits (64), Expect = 1.5
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 41 SLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEP 81
+L L + ++ + P +NL L LDLSGN + + P
Sbjct: 2 NLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLSP 40
Score = 27.8 bits (63), Expect = 1.6
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 419 LEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPP 460
LE L LS N + LP + L L +LDLS KI L P
Sbjct: 3 LETLDLSNNQITDLPPLS----NLPNLETLDLSGNKITDLSP 40
Score = 27.1 bits (61), Expect = 3.4
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 113 HLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLP 154
+L+TL+LS N++ + L NL L+TLDL + I++L
Sbjct: 2 NLETLDLSNNQITD-LP---PLSNLPNLETLDLSGNKITDLS 39
Score = 26.7 bits (60), Expect = 5.1
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 189 HLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLS 226
+L++LDLSN + N L TL LSGN ++
Sbjct: 2 NLETLDLSNNQIT---DLPPLSNLPNLETLDLSGNKIT 36
Score = 26.3 bits (59), Expect = 5.7
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 164 LRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLK 201
L L+L+ N++ DL NL +L++LDLS +
Sbjct: 3 LETLDLSNNQITDLPPL----SNLPNLETLDLSGNKIT 36
>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional.
Length = 754
Score = 35.8 bits (82), Expect = 0.078
Identities = 54/219 (24%), Positives = 90/219 (41%), Gaps = 36/219 (16%)
Query: 89 SLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNK---LKSHIDWTLVLGNLGKLDTLDL 145
+++ L N LT I + D + + +ELS N+ L + L +LDL
Sbjct: 221 NIKTLYANSNQLTSIPATLPDTI---QEMELSINRITELPERLP--------SALQSLDL 269
Query: 146 RQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLS 205
+ IS LP+N+ LR L++ +N + L L + HL+ S L L
Sbjct: 270 FHNKISCLPENLPEE---LRYLSVYDNSIRTL--PAHLPSGITHLNVQSNSLTALPETLP 324
Query: 206 EDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQ 265
L+TL N L++ L +L P +L L + ++ LP +
Sbjct: 325 PG-------LKTLEAGENALTS--LPASLPP--ELQVLDVSKNQITVLPETL---PPTIT 370
Query: 266 ELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRS 304
LD+S N L + L + +L+ + +NL R+ S
Sbjct: 371 TLDVSRNALTNLPENLPA---ALQIMQASRNNLVRLPES 406
Score = 32.7 bits (74), Expect = 0.84
Identities = 61/263 (23%), Positives = 96/263 (36%), Gaps = 90/263 (34%)
Query: 214 KLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNP 273
++ TL L N L S+ + L + L+ +PA +QE+++S N
Sbjct: 200 QITTLILDNNEL----KSLPENLQGNIKTLYANSNQLTSIPATLP---DTIQEMELSINR 252
Query: 274 LIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNL 333
+ E E L ++L++L L NK+ L L + L
Sbjct: 253 IT----------ELPERLP-----------------SALQSLDLFHNKISCLPENLPEEL 285
Query: 334 THLSVLELN--------NCGLTRLNETVFHENYTY------PDLEELRLSGNPLHVLPDS 379
+LSV + + G+T LN V + T P L+ L N L LP S
Sbjct: 286 RYLSVYDNSIRTLPAHLPSGITHLN--VQSNSLTALPETLPPGLKTLEAGENALTSLPAS 343
Query: 380 TKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLP 439
+P P+L+ L +S N + VLP LP
Sbjct: 344 --------LP---------------------------PELQVLDVSKNQITVLP--ETLP 366
Query: 440 PQLSRLRSLDLSRCKIDYLPPNV 462
P ++ +LD+SR + LP N+
Sbjct: 367 PTIT---TLDVSRNALTNLPENL 386
Score = 30.8 bits (69), Expect = 3.0
Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 39/133 (29%)
Query: 415 TYPD-LEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPN---------VFN 464
T PD ++E+ LS N + LP LP S L+SLDL KI LP N V++
Sbjct: 238 TLPDTIQEMELSINRITELP--ERLP---SALQSLDLFHNKISCLPENLPEELRYLSVYD 292
Query: 465 NT---------RNITSLNLANNNLSMTSELSFQFLDVLL---------------ELESLD 500
N+ IT LN+ +N+L+ E L L EL+ LD
Sbjct: 293 NSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASLPPELQVLD 352
Query: 501 LSNNNLTHISPTV 513
+S N +T + T+
Sbjct: 353 VSKNQITVLPETL 365
>gnl|CDD|197688 smart00370, LRR, Leucine-rich repeats, outliers.
Length = 24
Score = 30.8 bits (71), Expect = 0.096
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 309 MTSLKTLILSGNKLETLESGLFQN 332
+ +L+ L LS N+L +L G FQ
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQG 24
Score = 30.8 bits (71), Expect = 0.11
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 493 LLELESLDLSNNNLTHISPTVLRH 516
L L LDLSNN L+ + P +
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQG 24
Score = 28.9 bits (66), Expect = 0.48
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 442 LSRLRSLDLSRCKIDYLPPNVFNN 465
L LR LDLS ++ LPP F
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQG 24
Score = 26.5 bits (60), Expect = 3.0
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 87 LTSLEYLMLNRCNLTYISPSAFDN 110
L +L L L+ L+ + P AF
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQG 24
Score = 25.8 bits (58), Expect = 6.6
Identities = 10/23 (43%), Positives = 10/23 (43%)
Query: 237 LTKLHRLSLRNCGLSRLPANTFH 259
L L L L N LS LP F
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQ 23
Score = 25.4 bits (57), Expect = 9.8
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 63 LTTLNKLDLSGNPLRIIEPGVFDP 86
L L +LDLS N L + PG F
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQG 24
>gnl|CDD|197687 smart00369, LRR_TYP, Leucine-rich repeats, typical (most populated)
subfamily.
Length = 24
Score = 30.8 bits (71), Expect = 0.096
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 309 MTSLKTLILSGNKLETLESGLFQN 332
+ +L+ L LS N+L +L G FQ
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQG 24
Score = 30.8 bits (71), Expect = 0.11
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 493 LLELESLDLSNNNLTHISPTVLRH 516
L L LDLSNN L+ + P +
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQG 24
Score = 28.9 bits (66), Expect = 0.48
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 442 LSRLRSLDLSRCKIDYLPPNVFNN 465
L LR LDLS ++ LPP F
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQG 24
Score = 26.5 bits (60), Expect = 3.0
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 87 LTSLEYLMLNRCNLTYISPSAFDN 110
L +L L L+ L+ + P AF
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQG 24
Score = 25.8 bits (58), Expect = 6.6
Identities = 10/23 (43%), Positives = 10/23 (43%)
Query: 237 LTKLHRLSLRNCGLSRLPANTFH 259
L L L L N LS LP F
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQ 23
Score = 25.4 bits (57), Expect = 9.8
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 63 LTTLNKLDLSGNPLRIIEPGVFDP 86
L L +LDLS N L + PG F
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQG 24
>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional.
Length = 788
Score = 35.5 bits (81), Expect = 0.11
Identities = 57/222 (25%), Positives = 89/222 (40%), Gaps = 60/222 (27%)
Query: 312 LKTLILSGNKLETL--------ESGLFQN-LTHLSVLELNNCGLTRLNETVFHENYTYPD 362
L+TL +SGN+L +L E +F N LTHL L C L + P
Sbjct: 244 LRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPG 303
Query: 363 LEELRLSGNPLHVLP-------------------------------DSTKQYSMRTIPTQ 391
L+EL +S N L LP + S+ T+P++
Sbjct: 304 LQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTLPSE 363
Query: 392 IWKNFDF-------------LVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLL 438
++K + + L L + + +L+EL +SGN L LP +L
Sbjct: 364 LYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLP---ML 420
Query: 439 PPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLS 480
P S L SL + R ++ LP ++ + + T++NL N LS
Sbjct: 421 P---SGLLSLSVYRNQLTRLPESLIHLSSE-TTVNLEGNPLS 458
Score = 31.7 bits (71), Expect = 1.6
Identities = 76/274 (27%), Positives = 111/274 (40%), Gaps = 65/274 (23%)
Query: 143 LDLRQSGISNLPDNVFANNTWL-----------------RNLNLAENELIDLDVA----- 180
L++ +SG++ LPD + A+ T L R L ++ N+L L V
Sbjct: 206 LNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPVLPPGLL 265
Query: 181 --TTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNA-TKLRTLYLSGNPLSAADLSVALKPL 237
+ L HL +L C L F N T L L LS +D +A P
Sbjct: 266 ELSIFSNPLTHLPALPSGLCKLW------IFGNQLTSLPVLPPGLQELSVSDNQLASLPA 319
Query: 238 --TKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGY 295
++L +L N L+ LP + LQEL +S N L A L L S + Y
Sbjct: 320 LPSELCKLWAYNNQLTSLPTLP----SGLQELSVSDNQL-----ASLPTLPSELYKLWAY 370
Query: 296 SNLQRISRSTFLKMTSLKTLILSGNKLETLE------SGLFQNLTHLSVLELNNCG---- 345
+N R++ L + LK LI+SGN+L +L L + L+ L + G
Sbjct: 371 NN--RLTSLPALP-SGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSL 427
Query: 346 ------LTRLNETVFHENYTYPDLEELRLSGNPL 373
LTRL E++ H + + L GNPL
Sbjct: 428 SVYRNQLTRLPESLIHLSSE----TTVNLEGNPL 457
Score = 29.7 bits (66), Expect = 6.0
Identities = 42/153 (27%), Positives = 64/153 (41%), Gaps = 21/153 (13%)
Query: 361 PDLEELRLSGN---PLHVLPDSTKQYSMRTIP-TQIWKNFDFLVILFILNETVFHENYTY 416
P+L L +SGN L VLP + S+ + P T + L L+I +
Sbjct: 242 PELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLP 301
Query: 417 PDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLAN 476
P L+EL +S N L LP LP +L +L + + + LP + L++++
Sbjct: 302 PGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTSLPTLP-------SGLQELSVSD 351
Query: 477 NNLSMTSELSFQFLDVLLELESLDLSNNNLTHI 509
N L+ L EL L NN LT +
Sbjct: 352 NQLASLPTLPS-------ELYKLWAYNNRLTSL 377
>gnl|CDD|214507 smart00082, LRRCT, Leucine rich repeat C-terminal domain.
Length = 51
Score = 30.9 bits (70), Expect = 0.17
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 528 NPWKCDCNIADMWEW 542
NP+ CDC + + W
Sbjct: 1 NPFICDCELRWLLRW 15
>gnl|CDD|224276 COG1357, COG1357, Pentapeptide repeats containing protein [Function
unknown].
Length = 238
Score = 33.7 bits (77), Expect = 0.25
Identities = 45/206 (21%), Positives = 66/206 (32%), Gaps = 26/206 (12%)
Query: 57 PQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSA-------FD 109
L DL G+ L++ + + E L+ +L+ + S
Sbjct: 20 QGIRELKANLLGADLQGSELQLGD-------LNFENANLSGLDLSGANLSGADLSNANLR 72
Query: 110 NLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNL 169
+ K +LS L + + L +L + +NL + L N NL
Sbjct: 73 GADLSKGADLSGADL-EGANLRGANLSGANLSGANLSNATRANL-SGADLSGANLSNANL 130
Query: 170 AENELIDLDVATTLGQNL-------VHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSG 222
+L A G NL L DLS L G A + L LSG
Sbjct: 131 TGA---NLSGANLNGANLSNANLSGADLSGADLSGADLSGANLSGADLRGANLSGANLSG 187
Query: 223 NPLSAADLSVALKPLTKLHRLSLRNC 248
L A+LS A L +L N
Sbjct: 188 ADLRNANLSGADLSGADLTGANLVNA 213
>gnl|CDD|216209 pfam00946, Mononeg_RNA_pol, Mononegavirales RNA dependent RNA
polymerase. Members of the Mononegavirales including
the Paramyxoviridae, like other non-segmented negative
strand RNA viruses, have an RNA-dependent RNA polymerase
composed of two subunits, a large protein L and a
phosphoprotein P. This is a protein family of the L
protein. The L protein confers the RNA polymerase
activity on the complex. The P protein acts as a
transcription factor.
Length = 1065
Score = 33.0 bits (76), Expect = 0.65
Identities = 32/198 (16%), Positives = 52/198 (26%), Gaps = 23/198 (11%)
Query: 198 CHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANT 257
HL PL D +L L L T L + LP
Sbjct: 2 YHLNSPLVSDKLSLLLELGGLP----------HPYLLNDKTLLRNIRWDRIRGEELP--L 49
Query: 258 FHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLIL 317
LQ + + + P S+ + + S+ L + L +
Sbjct: 50 IEHLRTLQNWLNKWLLSLGEYKVVPYP--SINPELLRIVDPHDSSQLEELLKLVNRELSI 107
Query: 318 SGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLP 377
+K+E L L L L + + DL + L N
Sbjct: 108 ISSKVEDFLDDLGYKLKGKDKLFLTSLA---------PLCNSILDLHAVMLILNWYDFST 158
Query: 378 DSTKQYSMRTIPTQIWKN 395
T + +R++ K
Sbjct: 159 WFTIKTELRSLIKTFRKV 176
>gnl|CDD|234651 PRK00125, pyrF, orotidine 5'-phosphate decarboxylase; Reviewed.
Length = 278
Score = 30.2 bits (69), Expect = 3.2
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 536 IADMWEWATREKGDIGVLVGSTTPTEI 562
A + G IG++VG+T P E+
Sbjct: 177 AAALNNLGNCGYGSIGLVVGATFPPEL 203
>gnl|CDD|241399 cd13245, PH_PLEKHG7, Pleckstrin homology domain-containing family G
member 7 pleckstrin homology (PH) domain. PLEKHG7 has a
RhoGEF DH/double-homology domain in tandem with a PH
domain which is involved in phospholipid binding.
PLEKHG7 is proposed to functions as a guanine nucleotide
exchange factor (GEF) and is involved in the regulation
of Rho protein signal transduction. PH domains have
diverse functions, but in general are involved in
targeting proteins to the appropriate cellular location
or in the interaction with a binding partner. They share
little sequence conservation, but all have a common
fold, which is electrostatically polarized. Less than
10% of PH domains bind phosphoinositide phosphates
(PIPs) with high affinity and specificity. PH domains
are distinguished from other PIP-binding domains by
their specific high-affinity binding to PIPs with two
vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2
or PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 189
Score = 29.1 bits (65), Expect = 6.0
Identities = 27/110 (24%), Positives = 40/110 (36%), Gaps = 8/110 (7%)
Query: 419 LEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRC----KIDYLPPNVFNNTRNITSLNL 474
L E LS H+L G L + +R + L I + N + T L L
Sbjct: 57 LAENILSPTSRHLLHDGKLTLAESTRNLDVYLFLFDDFLLITKIKCNKKKVGGSDTGLRL 116
Query: 475 ANNNLSMTSEL----SFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAI 520
+ L S LD + L+ L L N + + S LR++ I
Sbjct: 117 PQLTPELQQVLKEGGSCTVLDQPISLDRLQLKNIDQLNASAFGLRNSFLI 166
>gnl|CDD|183076 PRK11285, araH, L-arabinose transporter permease protein;
Provisional.
Length = 333
Score = 28.9 bits (65), Expect = 9.5
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 20/69 (28%)
Query: 388 IPTQIWKN-FDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLR 446
+P IW F+V F+LN+T F N L + GN + +RL
Sbjct: 178 VPAPIWLTVACFVVFGFLLNKTTFGRN-------TLAIGGN------------EEAARLA 218
Query: 447 SLDLSRCKI 455
+ + R KI
Sbjct: 219 GVPVVRTKI 227
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.405
Gapped
Lambda K H
0.267 0.0925 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 35,099,745
Number of extensions: 3412445
Number of successful extensions: 2969
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2778
Number of HSP's successfully gapped: 114
Length of query: 694
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 590
Effective length of database: 6,324,786
Effective search space: 3731623740
Effective search space used: 3731623740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.3 bits)