RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3329
(694 letters)
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 278 bits (713), Expect = 8e-85
Identities = 109/558 (19%), Positives = 196/558 (35%), Gaps = 75/558 (13%)
Query: 17 PGLITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP 75
L ++L I + F L L + L + + L L
Sbjct: 57 INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTG 116
Query: 76 LRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLG 135
+ I+ +LE L L +++ I LK L+ N + +
Sbjct: 117 ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED--MS 174
Query: 136 NLGKLDTLDLRQSG--ISNLPDNVFANN-------------------------TWLRNLN 168
+L + L L +G I+ + F + L
Sbjct: 175 SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGT 234
Query: 169 LAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAA 228
+ + D+ A G + ++S++L + +S + F + L+ L L+ LS
Sbjct: 235 FEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN-ISSNTFHCFSGLQELDLTATHLS-- 291
Query: 229 DLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTA-LLSPLES 287
+L L L+ L +L L L + F L L I N L LE+
Sbjct: 292 ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351
Query: 288 LEHLDMGYSNLQRI--SRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCG 345
L LD+ + +++ ++ L++L LS N+ +L++ F+ L +L+L
Sbjct: 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411
Query: 346 LTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFIL 405
L + +N L+ L LS + L + + FD L
Sbjct: 412 LKVKDAQSPFQNLHL--LKVLNLSHSLLDISSEQL---------------FDGL------ 448
Query: 406 NETVFHENYTYPDLEELRLSGNPLHVLPTGNLLP-PQLSRLRSLDLSRCKIDYLPPNVFN 464
P L+ L L GN L RL L LS C + + + F
Sbjct: 449 -----------PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFT 497
Query: 465 NTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIK 524
+ + + ++L++N L+ +S + L + L+L++N+++ I P++L +I
Sbjct: 498 SLKMMNHVDLSHNRLTSSSIEALSHLKGI----YLNLASNHISIILPSLLPILSQQRTIN 553
Query: 525 LVGNPWKCDCNIADMWEW 542
L NP C C+ EW
Sbjct: 554 LRQNPLDCTCSNIYFLEW 571
Score = 234 bits (600), Expect = 2e-68
Identities = 104/488 (21%), Positives = 165/488 (33%), Gaps = 49/488 (10%)
Query: 45 LYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYIS 104
+ L++I + L + S N L I+ F L +L +L L RC + +I
Sbjct: 17 YNCENLGLNEIPGTLPNSTECL---EFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH 73
Query: 105 PSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWL 164
F + + L TL L+ N L + L L L Q+GIS++ N L
Sbjct: 74 EDTFQSQHRLDTLVLTANPLIFMAE--TALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131
Query: 165 RNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLR--TLYLSG 222
+L L N + + + G L LD N + LS++ + + +L L+G
Sbjct: 132 ESLYLGSNHISSIKLPK--GFPTEKLKVLDFQNNAIHY-LSKEDMSSLQQATNLSLNLNG 188
Query: 223 NPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPL--IDAFTA 280
N ++ + + + L L I
Sbjct: 189 NDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVF 248
Query: 281 LLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLE 340
S+E +++ IS +TF + L+ L L+ L L SG L+ L L
Sbjct: 249 EGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSG-LVGLSTLKKLV 307
Query: 341 LNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLV 400
L+ L + P L L + GN
Sbjct: 308 LSANKFENLCQISASNF---PSLTHLSIKGNT---------------------------- 336
Query: 401 ILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPP 460
L +L EL LS + + NL LS L+SL+LS + L
Sbjct: 337 KRLELGTGCLE---NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT 393
Query: 461 NVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAI 520
F + L+LA L + S L L+ L+LS++ L S + A+
Sbjct: 394 EAFKECPQLELLDLAFTRLKVKDAQS--PFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL 451
Query: 521 TSIKLVGN 528
+ L GN
Sbjct: 452 QHLNLQGN 459
Score = 202 bits (517), Expect = 7e-57
Identities = 86/395 (21%), Positives = 145/395 (36%), Gaps = 40/395 (10%)
Query: 12 RNLDNPGLITINLNANPIQPVE--------------------------GAFLVARSLLYL 45
+L +++NLN N I +E +SL
Sbjct: 174 SSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLG 233
Query: 46 YMQECTLSKINPQFFTNLTTLN--KLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYI 103
++ I+P F L ++ ++L + I F + L+ L L +L+ +
Sbjct: 234 TFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL 293
Query: 104 SPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQ-SGISNLPDNVFANNT 162
PS L+ LK L LS NK ++ + N L L ++ + L N
Sbjct: 294 -PSGLVGLSTLKKLVLSANKFENLCQIS--ASNFPSLTHLSIKGNTKRLELGTGCLENLE 350
Query: 163 WLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSG 222
LR L+L+ +++ D +NL HL SL+LS L +AF +L L L+
Sbjct: 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS-LKTEAFKECPQLELLDLAF 409
Query: 223 NPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPL---IDAFT 279
L D + L L L+L + L F LQ L++ N T
Sbjct: 410 TRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKT 469
Query: 280 ALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVL 339
L L LE L + + +L I + F + + + LS N+L + +L + L
Sbjct: 470 NSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YL 528
Query: 340 ELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLH 374
L + ++ + ++ + L NPL
Sbjct: 529 NLASNHISIILPSLLPIL---SQQRTINLRQNPLD 560
Score = 161 bits (409), Expect = 3e-42
Identities = 67/389 (17%), Positives = 116/389 (29%), Gaps = 71/389 (18%)
Query: 142 TLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLK 201
T + G++ +P + + L + N L + TT L++L LDL+ C +
Sbjct: 16 TYNCENLGLNEIPGTLPNS---TECLEFSFNVLPTIQ-NTTF-SRLINLTFLDLTRCQIY 70
Query: 202 GPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRF 261
+ ED F + +L TL L+ NPL AL L L G+S + H
Sbjct: 71 W-IHEDTFQSQHRLDTLVLTANPLIFMA-ETALSGPKALKHLFFIQTGISSIDFIPLHNQ 128
Query: 262 TCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNK 321
L+ L + N ++ I LK L N
Sbjct: 129 KTLESLYLGSN------------------------HISSIKLPKGFPTEKLKVLDFQNNA 164
Query: 322 LETLESGLFQNLTHLSVLEL--NNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDS 379
+ L +L + L L N + + F + L G ++
Sbjct: 165 IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAV----FQSLNFGGTQNLLVIFK 220
Query: 380 TKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLP 439
+N T L +
Sbjct: 221 G------------------------------LKNSTIQSLWLGTFEDMDDEDISPAVFEG 250
Query: 440 PQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESL 499
+ S++L + + N F+ + L+L +LS L L+ L
Sbjct: 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVG----LSTLKKL 306
Query: 500 DLSNNNLTHISPTVLRHNRAITSIKLVGN 528
LS N ++ + ++T + + GN
Sbjct: 307 VLSANKFENLCQISASNFPSLTHLSIKGN 335
Score = 91.6 bits (228), Expect = 2e-19
Identities = 37/213 (17%), Positives = 69/213 (32%), Gaps = 43/213 (20%)
Query: 313 KTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNP 372
KT L + L + L + L + T F +L L L+
Sbjct: 15 KTYNCENLGLNEIPGTLPNSTECLE---FSFNVLPTIQNTTFSR---LINLTFLDLTRCQ 68
Query: 373 LHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVL 432
++ + + T F L+ L L+ NPL +
Sbjct: 69 IYWIHEDT---------------FQSQ-----------------HRLDTLVLTANPLIFM 96
Query: 433 PTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDV 492
L L+ L + I + +N + + SL L +N++S +
Sbjct: 97 AETALSG--PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTE- 153
Query: 493 LLELESLDLSNNNLTHISPTVLRHNRAITSIKL 525
+L+ LD NN + ++S + + T++ L
Sbjct: 154 --KLKVLDFQNNAIHYLSKEDMSSLQQATNLSL 184
Score = 53.1 bits (128), Expect = 2e-07
Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 6/84 (7%)
Query: 446 RSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNN 505
++ + ++ +P + N+T L + N L +F L + L LDL+
Sbjct: 15 KTYNCENLGLNEIPGTLPNST---ECLEFSFNVLPTIQNTTFSRL---INLTFLDLTRCQ 68
Query: 506 LTHISPTVLRHNRAITSIKLVGNP 529
+ I + + ++ L NP
Sbjct: 69 IYWIHEDTFQSQHRLDTLVLTANP 92
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 268 bits (687), Expect = 3e-80
Identities = 115/532 (21%), Positives = 195/532 (36%), Gaps = 45/532 (8%)
Query: 19 LITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRI 78
+ + + V ++ L + L ++ FT + L LD+ N +
Sbjct: 6 HEVADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63
Query: 79 IEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLG 138
+EP + L L+ L L L+ +S F +L L L N ++ +
Sbjct: 64 LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNP--FVKQK 121
Query: 139 KLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNC 198
L TLDL +G+S+ L+ L L+ N++ L L L+LS+
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181
Query: 199 HLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKP--LTKLHRLSLRNCGLSRLPAN 256
+K S F +L L+L+ L + T + LSL N LS
Sbjct: 182 QIKE-FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240
Query: 257 TFH--RFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKT 314
TF ++T L LD+S+N L + L LE+ + Y+N+Q + + + +++
Sbjct: 241 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY 300
Query: 315 LILSGN---------KLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEE 365
L L + L ++ FQ L L L + + + + +F +L+
Sbjct: 301 LNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL---INLKY 357
Query: 366 LRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVI---------LFILNETVFHENYTY 416
L LS + S+RT+ + + + + + + F
Sbjct: 358 LSLSNSFT----------SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW---L 404
Query: 417 PDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLAN 476
LE L L N + TG L + + LS K L N F ++ L L
Sbjct: 405 GHLEVLDLGLNEIGQELTGQEWRG-LENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR 463
Query: 477 NNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGN 528
L F L L LDLSNNN+ +I+ +L + + L N
Sbjct: 464 VALKNVDSSPSPFQP-LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHN 514
Score = 242 bits (619), Expect = 1e-70
Identities = 115/550 (20%), Positives = 202/550 (36%), Gaps = 102/550 (18%)
Query: 13 NLDNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLS 72
N L + L++N I + +P F + L L L+
Sbjct: 167 IFANSSLKKLELSSNQI-----------------------KEFSPGCFHAIGRLFGLFLN 203
Query: 73 GNPLRIIEP---GVFDPLTSLEYLMLNRCNLTYISPSAFDNLN--HLKTLELSQNKLKSH 127
L + TS+ L L+ L+ S + F L +L L+LS N L
Sbjct: 204 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263
Query: 128 IDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLG--- 184
+ + L +L+ L + I +L + +R LNL + +L
Sbjct: 264 GNDS--FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKID 321
Query: 185 ----QNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVAL---KPL 237
Q L L+ L++ + + G + + F L+ L LS + S L+
Sbjct: 322 DFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH 380
Query: 238 TKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTA-LLSPLESLEHLDMGYS 296
+ LH L+L +S++ ++ F L+ LD+ N + T LE++ + + Y+
Sbjct: 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440
Query: 297 NLQRISRSTFLKMTSLKTLILSGNKLETLES--GLFQNLTHLSVLELNNCGLTRLNETVF 354
+++R++F + SL+ L+L L+ ++S FQ L +L++L+L+N + +N+ +
Sbjct: 441 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML 500
Query: 355 HENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENY 414
LE L L N L L P
Sbjct: 501 EGL---EKLEILDLQHNNLARLWK-------HANPGGPIYFLK----------------- 533
Query: 415 TYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNL 474
LS L L+L D +P VF + + ++L
Sbjct: 534 --------------------------GLSHLHILNLESNGFDEIPVEVFKDLFELKIIDL 567
Query: 475 ANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHN-RAITSIKLVGNPWKCD 533
NNL + L + + L+SL+L N +T + V R +T + + NP+ C
Sbjct: 568 GLNNL---NTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624
Query: 534 C-NIADMWEW 542
C +IA W
Sbjct: 625 CESIAWFVNW 634
Score = 234 bits (600), Expect = 7e-68
Identities = 102/505 (20%), Positives = 177/505 (35%), Gaps = 62/505 (12%)
Query: 41 SLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNL 100
S L+++ TN+T L+L+ N LR + F + L L + +
Sbjct: 5 SHEVADCSHLKLTQVPDDLPTNITV---LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61
Query: 101 TYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFAN 160
+ + P L LK L L N+L D L L L + I + +N F
Sbjct: 62 SKLEPELCQKLPMLKVLNLQHNELSQLSD--KTFAFCTNLTELHLMSNSIQKIKNNPFVK 119
Query: 161 NTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSED-AFVNATKLRTLY 219
L L+L+ N L + T L +L L LSN ++ SE+ + L+ L
Sbjct: 120 QKNLITLDLSHNGLSSTKLGTQ--VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE 177
Query: 220 LSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTC---LQELDISHNPL-- 274
LS N + + +L L L N L ++ L +S++ L
Sbjct: 178 LSSNQIKEFSPG-CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST 236
Query: 275 IDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLT 334
T L +L LD+ Y+NL + +F + L+ L N ++ L S L
Sbjct: 237 TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLF 296
Query: 335 HLSVLELNN---------CGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSM 385
++ L L L ++++ F LE L + N +
Sbjct: 297 NVRYLNLKRSFTKQSISLASLPKIDDFSFQWL---KCLEHLNMEDNDI------------ 341
Query: 386 RTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPL--HVLPTGNLLPPQLS 443
I + ++ +L+ L LS + L + S
Sbjct: 342 PGIKSNMFTGL--------------------INLKYLSLSNSFTSLRTLTNETFVSLAHS 381
Query: 444 RLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSN 503
L L+L++ KI + + F+ ++ L+L N + EL+ Q L + + LS
Sbjct: 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG--QELTGQEWRGLENIFEIYLSY 439
Query: 504 NNLTHISPTVLRHNRAITSIKLVGN 528
N ++ ++ + L
Sbjct: 440 NKYLQLTRNSFALVPSLQRLMLRRV 464
Score = 211 bits (539), Expect = 2e-59
Identities = 87/384 (22%), Positives = 144/384 (37%), Gaps = 25/384 (6%)
Query: 12 RNLDNPGLITINLNANPIQPV-EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLD 70
L L ++L+ N + V +F L Y +++ + + L + L+
Sbjct: 243 LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLN 302
Query: 71 LSGN---------PLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQ 121
L + L I+ F L LE+L + ++ I + F L +LK L LS
Sbjct: 303 LKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN 362
Query: 122 NKLKSHIDWTLVLGNLG--KLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDV 179
+ +L L L+L ++ IS + + F+ L L+L NE+
Sbjct: 363 SFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT 422
Query: 180 ATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSV-ALKPLT 238
L ++ + LS L+ ++F L+ L L L D S +PL
Sbjct: 423 GQEWR-GLENIFEIYLSYNKYLQ-LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR 480
Query: 239 KLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPL--------IDAFTALLSPLESLEH 290
L L L N ++ + + L+ LD+ HN L L L L
Sbjct: 481 NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI 540
Query: 291 LDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLN 350
L++ + I F + LK + L N L TL + +F N L L L +T +
Sbjct: 541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600
Query: 351 ETVFHENYTYPDLEELRLSGNPLH 374
+ VF + +L EL + NP
Sbjct: 601 KKVFGPAFR--NLTELDMRFNPFD 622
Score = 202 bits (515), Expect = 4e-56
Identities = 96/450 (21%), Positives = 164/450 (36%), Gaps = 45/450 (10%)
Query: 88 TSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQ 147
S E + LT + ++ L L+ N+L+ +L +LD+
Sbjct: 4 VSHEVADCSHLKLTQVPDDLP---TNITVLNLTHNQLRRLPAAN--FTRYSQLTSLDVGF 58
Query: 148 SGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSED 207
+ IS L + L+ LNL NEL L + +L L L + ++ + +
Sbjct: 59 NTISKLEPELCQKLPMLKVLNLQHNELSQL--SDKTFAFCTNLTELHLMSNSIQK-IKNN 115
Query: 208 AFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTC--LQ 265
FV L TL LS N LS+ L L L L L N + L + F L+
Sbjct: 116 PFVKQKNLITLDLSHNGLSSTKLG-TQVQLENLQELLLSNNKIQALKSEELDIFANSSLK 174
Query: 266 ELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRI---SRSTFLKMTSLKTLILSGNKL 322
+L++S N + + + L L + L L TS++ L LS ++L
Sbjct: 175 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 234
Query: 323 ETLESGLFQNL--THLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDST 380
T + F L T+L++L+L+ L + F P LE L N + L +
Sbjct: 235 STTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWL---PQLEYFFLEYNNIQHLFSHS 291
Query: 381 KQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPP 440
L + LN + + +S L + +
Sbjct: 292 ---------------LHGLFNVRYLN---LKRS-----FTKQSISLASLPKIDDFSFQ-- 326
Query: 441 QLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLD-VLLELESL 499
L L L++ I + N+F N+ L+L+N+ S+ + + F+ L L
Sbjct: 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 386
Query: 500 DLSNNNLTHISPTVLRHNRAITSIKLVGNP 529
+L+ N ++ I + + L N
Sbjct: 387 NLTKNKISKIESDAFSWLGHLEVLDLGLNE 416
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 252 bits (645), Expect = 6e-75
Identities = 115/571 (20%), Positives = 195/571 (34%), Gaps = 86/571 (15%)
Query: 17 PGLITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP 75
L ++L+ I+ +E A+ L L + + +P F+ LT+L L
Sbjct: 56 SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETK 115
Query: 76 LRIIEPGVFDPLTSLEYLMLNRCNLTYIS-PSAFDNLNHLKTLELSQNKLKSHIDWTL-V 133
L +E L +L+ L + + P+ F NL +L ++LS N +++ L
Sbjct: 116 LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175
Query: 134 LGNLGK-LDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDS 192
L + +LD+ + I + D F L L L N ++ T QNL L
Sbjct: 176 LRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNS-SNIMKTCLQNLAGLHV 233
Query: 193 LDLSNCHLKG-------------------------------PLSEDAFVNATKLRTLYLS 221
L K F + + L+
Sbjct: 234 HRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLA 293
Query: 222 GNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTAL 281
G + + + K LS+ C L + P L+ L ++ N +F
Sbjct: 294 GVSIKYLE---DVPKHFKWQSLSIIRCQLKQFPTLD---LPFLKSLTLTMNKGSISFK-- 345
Query: 282 LSPLESLEHLDMGYSNLQRISRSTF--LKMTSLKTLILSGNKLETLESGLFQNLTHLSVL 339
L SL +LD+ + L ++ L SL+ L LS N + S F L L L
Sbjct: 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM-SANFMGLEELQHL 404
Query: 340 ELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFL 399
+ + L R+ E + L L +S + D F L
Sbjct: 405 DFQHSTLKRVTEFSAFLS--LEKLLYLDISYTNTKIDFDGI---------------FLGL 447
Query: 400 VILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLP 459
L L+++GN N+ + L LDLS+C+++ +
Sbjct: 448 -----------------TSLNTLKMAGNSFKDNTLSNVF-ANTTNLTFLDLSKCQLEQIS 489
Query: 460 PNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRA 519
VF+ + LN+++NNL L + L L +LD S N + + ++
Sbjct: 490 WGVFDTLHRLQLLNMSHNNL---LFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKS 546
Query: 520 ITSIKLVGNPWKCDCNIADMWEWATREKGDI 550
+ L N C C +W +K +
Sbjct: 547 LAFFNLTNNSVACICEHQKFLQWVKEQKQFL 577
Score = 202 bits (516), Expect = 9e-57
Identities = 88/477 (18%), Positives = 158/477 (33%), Gaps = 45/477 (9%)
Query: 69 LDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHI 128
L + + +S + + L+ L + +F N + L+ L+LS+ ++ I
Sbjct: 16 YQCMDQKLSKVPDDIP---SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEI-ETI 71
Query: 129 DWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLV 188
+ L L L L + I + F+ T L NL E +L L+ L+
Sbjct: 72 E-DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPI--GQLI 128
Query: 189 HLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLS---AADLSVALKPLTKLHRLSL 245
L L++++ + F N T L + LS N + DL + L +
Sbjct: 129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDM 188
Query: 246 RNCGLSRLPANTFHRFTCLQELDISHNPLI-DAFTALLSPLESLEHLDM------GYSNL 298
+ + F L EL + N + L L L + NL
Sbjct: 189 SLNPIDFIQDQAFQGIK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL 247
Query: 299 QRISRSTFLKMTSLKTLIL--SGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHE 356
+ S + + + + + F L ++S + L + L + H
Sbjct: 248 EIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHF 307
Query: 357 NYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILN--ETVFHENY 414
+ L + L P + FL L + ++ +
Sbjct: 308 K-----WQSLSIIRCQLKQFPTL---------------DLPFLKSLTLTMNKGSISFKKV 347
Query: 415 TYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNL 474
P L L LS N L + + LR LDLS + F + L+
Sbjct: 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA-IIMSANFMGLEELQHLDF 406
Query: 475 ANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWK 531
++ L +E S L +L LD+S N + ++ ++K+ GN +K
Sbjct: 407 QHSTLKRVTEFS--AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK 461
Score = 155 bits (393), Expect = 3e-40
Identities = 81/388 (20%), Positives = 149/388 (38%), Gaps = 45/388 (11%)
Query: 142 TLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLK 201
T +S +PD++ ++ +N++L+ N L L + + N L LDLS C ++
Sbjct: 15 TYQCMDQKLSKVPDDIPSS---TKNIDLSFNPLKILK-SYSFS-NFSELQWLDLSRCEIE 69
Query: 202 GPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRF 261
+ + A+ L L L+GNP+ + + LT L L L+ L + +
Sbjct: 70 T-IEDKAWHGLHHLSNLILTGNPIQSFSPG-SFSGLTSLENLVAVETKLASLESFPIGQL 127
Query: 262 TCLQELDISHNPLIDA-FTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLK----TLI 316
L++L+++HN + A S L +L H+D+ Y+ +Q I+ + + +L
Sbjct: 128 ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD 187
Query: 317 LSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVL 376
+S N ++ ++ FQ + L L L + +N L RL
Sbjct: 188 MSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLA--GLHVHRLILGEFKDE 244
Query: 377 PDSTKQYSMRTIPTQIWKNFDFLVIL---------FILNETVFHENYTYPDLEELRLSGN 427
+ I + + I F + FH ++ + L+G
Sbjct: 245 RNLE------IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFH---CLANVSAMSLAGV 295
Query: 428 PLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSF 487
+ L P+ + +SL + RC++ P + + SL L N S++ +
Sbjct: 296 SIKYLEDV----PKHFKWQSLSIIRCQLKQFP---TLDLPFLKSLTLTMNKGSISFKKVA 348
Query: 488 QFLDVLLELESLDLSNNNLTHISPTVLR 515
L L LDLS N L+
Sbjct: 349 -----LPSLSYLDLSRNALSFSGCCSYS 371
Score = 86.6 bits (215), Expect = 8e-18
Identities = 39/216 (18%), Positives = 69/216 (31%), Gaps = 42/216 (19%)
Query: 313 KTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNP 372
T KL + + + ++ L+ L L F + +L+ L LS
Sbjct: 14 ITYQCMDQKLSKVPDDIPSSTKNID---LSFNPLKILKSYSFS---NFSELQWLDLSRCE 67
Query: 373 LHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVL 432
+ + D + L L L L+GNP+
Sbjct: 68 IETIEDKA---------------WHGL-----------------HHLSNLILTGNPIQSF 95
Query: 433 PTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDV 492
G+ L+ L +L K+ L + LN+A+N + + +
Sbjct: 96 SPGSFSG--LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA--YFSN 151
Query: 493 LLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGN 528
L L +DLS N + I+ L+ R + L +
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD 187
Score = 50.8 bits (122), Expect = 1e-06
Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Query: 447 SLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNL 506
+ K+ +P ++ ++T +++L+ N L + SF EL+ LDLS +
Sbjct: 15 TYQCMDQKLSKVPDDIPSST---KNIDLSFNPLKILKSYSFSNF---SELQWLDLSRCEI 68
Query: 507 THISPTVLRHNRAITSIKLVGNP 529
I ++++ L GNP
Sbjct: 69 ETIEDKAWHGLHHLSNLILTGNP 91
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 250 bits (640), Expect = 2e-72
Identities = 116/581 (19%), Positives = 210/581 (36%), Gaps = 72/581 (12%)
Query: 17 PGLITINLNANPIQPV-EGAFLVARSLLYLYMQE-CTLSKINPQFFTNLTTLNKLDLSGN 74
+ L+ N I+ V +F L L + T I+ + F NL L LDL +
Sbjct: 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83
Query: 75 PLRIIEPGVFDPLTSLEYLMLNRCNLT--YISPSAFDNLNHLKTLELSQNKLKSHIDWTL 132
+ + P F L L L L C L+ + F NL L L+LS+N+++S +
Sbjct: 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS-LYLHP 142
Query: 133 VLGNLGKLDTLDLRQSGISNLPDNVFAN--NTWLRNLNLAENELIDLDVATTLGQ----N 186
G L L ++D + I + ++ L +LA N L
Sbjct: 143 SFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR 202
Query: 187 LVHLDSLDLSNCHLKGP-----------LSEDAFVNATKLRTLYLSGNPLSAADLSVALK 235
+ L+ LD+S + + A + + + D +
Sbjct: 203 NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN-TFA 261
Query: 236 PLTK--LHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDM 293
L + + L L + + L + F L+ L++++N + L++L+ L++
Sbjct: 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321
Query: 294 GYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETV 353
Y+ L + S F + + + L N + ++ F+ L L L+L + LT ++
Sbjct: 322 SYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFI- 380
Query: 354 FHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHEN 413
P + ++ LSGN L LP + N L + N + +
Sbjct: 381 -------PSIPDIFLSGNKLVTLPKIN-----------LTANLIHLSENRLENLDILYFL 422
Query: 414 YTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDY-----LPPNVFNNTRN 468
P L+ L L+ N G+ P + L L L + L +VF +
Sbjct: 423 LRVPHLQILILNQNRFSSCS-GDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSH 481
Query: 469 ITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTV---------LRHNR- 518
+ L L +N L+ F L L L L++N LT +S + N+
Sbjct: 482 LQVLYLNHNYLNSLPPGVFSHLT---ALRGLSLNSNRLTVLSHNDLPANLEILDISRNQL 538
Query: 519 ---------AITSIKLVGNPWKCDCNIADMWEWATREKGDI 550
+++ + + N + C+C ++ W I
Sbjct: 539 LAPNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTI 579
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 241 bits (616), Expect = 2e-71
Identities = 101/528 (19%), Positives = 178/528 (33%), Gaps = 56/528 (10%)
Query: 40 RSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCN 99
++ L + ++ I L L L + + IE F L SLE+L L+ +
Sbjct: 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85
Query: 100 LTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDL-RQSGISNLPDNVF 158
L+ +S S F L+ LK L L N ++ + T + NL L TL + S + F
Sbjct: 86 LSSLSSSWFGPLSSLKYLNLMGNPYQT-LGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144
Query: 159 ANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTL 218
A T L L + L + + +++ + L L L E + +R L
Sbjct: 145 AGLTSLNELEIKALSLRNYQSQSL--KSIRDIHHLTLHLSESAF-LLEIFADILSSVRYL 201
Query: 219 YLSGNPLSAADLSV--ALKPLTKLHRLSLRNCGLSRLPANT----FHRFTCLQELDISHN 272
L L+ S + + + +L+ R L+ N L E++
Sbjct: 202 ELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC 261
Query: 273 PL----------IDAFTALLS-PLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNK 321
L D + L ++ L + L + + + +K + + +K
Sbjct: 262 TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK 321
Query: 322 LETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTK 381
+ + Q+L L L+L+ + +P L+ L LS N L + + +
Sbjct: 322 VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGE 381
Query: 382 QYSMRTIPTQIWKNFDFLVILFILN------ETVFHENYTYPDLEELRLSGNPLHVLPTG 435
L L L+ + + L LS + V+ T
Sbjct: 382 I-------------LLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTC 428
Query: 436 NLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLE 495
L LD+S +D + L ++ N L + S
Sbjct: 429 I-----PQTLEVLDVSNNNLDSFSL----FLPRLQELYISRNKLKTLPDASL-----FPV 474
Query: 496 LESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIAD-MWEW 542
L + +S N L + + ++ I L NPW C C D + W
Sbjct: 475 LLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 522
Score = 175 bits (446), Expect = 1e-47
Identities = 75/398 (18%), Positives = 149/398 (37%), Gaps = 20/398 (5%)
Query: 142 TLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLK 201
D R +++P + A +++L+L+ N++ + + +L L L + +
Sbjct: 9 VCDGRSRSFTSIPSGLTAA---MKSLDLSFNKITYIGHGDL--RACANLQVLILKSSRIN 63
Query: 202 GPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPAN-TFHR 260
+ DAF + L L LS N LS+ S PL+ L L+L L F
Sbjct: 64 T-IEGDAFYSLGSLEHLDLSDNHLSSLSSS-WFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121
Query: 261 FTCLQELDISHNPLIDAFTA-LLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSG 319
T LQ L I + + L SL L++ +L+ + + + L L
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181
Query: 320 NKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDS 379
++ L L+ + LEL + L R + + +++L G+ L +
Sbjct: 182 SESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN 241
Query: 380 TKQYSMRTIPTQIWKNFDFLVILFILN-----ETVFHE--NYTYPDLEELRLSGNPLHVL 432
+R I FD + + + V E + L + L
Sbjct: 242 ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYD 301
Query: 433 PTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDV 492
+ L +++ + + K+ +P + + +++ L+L+ N + +
Sbjct: 302 LSTVYS--LLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGA 359
Query: 493 LLELESLDLSNNNLTHISPT--VLRHNRAITSIKLVGN 528
L++L LS N+L + T +L + +TS+ + N
Sbjct: 360 WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN 397
Score = 172 bits (439), Expect = 1e-46
Identities = 88/468 (18%), Positives = 158/468 (33%), Gaps = 90/468 (19%)
Query: 19 LITINL-NANPIQPV-EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPL 76
L T+ + N + F SL L ++ +L Q ++ ++ L L +
Sbjct: 125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184
Query: 77 RIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGN 136
+ D L+S+ YL L NL S ++ +
Sbjct: 185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFR------------- 231
Query: 137 LGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLS 196
S L D F L L +E+ D L+ L
Sbjct: 232 -------------GSVLTDESFNELLKLLRYILELSEVEFDD---------CTLNGLGDF 269
Query: 197 NCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPAN 256
N +SE V +R L++ L DLS L K+ R+++ N + +P +
Sbjct: 270 NPSESDVVSELGKVETVTIRRLHIPQFYLF-YDLSTVYSLLEKVKRITVENSKVFLVPCS 328
Query: 257 TFHRFTCLQELDISHNPLIDAF---TALLSPLESLEHLDMGYSNLQRISR--STFLKMTS 311
L+ LD+S N +++ + +A SL+ L + ++L+ + + L + +
Sbjct: 329 FSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN 388
Query: 312 LKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGN 371
L +L +S N + Q + L L++ G+ + + LE L +S N
Sbjct: 389 LTSLDISRNTFHPMPDS-CQWPEKMRFLNLSSTGIRVVKTCIP------QTLEVLDVSNN 441
Query: 372 PLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHV 431
L P L+EL +S N L
Sbjct: 442 NLDSFSLFL------------------------------------PRLQELYISRNKLKT 465
Query: 432 LPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNL 479
LP +L P L + +SR ++ +P +F+ ++ + L N
Sbjct: 466 LPDASLFP----VLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509
Score = 117 bits (295), Expect = 8e-28
Identities = 52/272 (19%), Positives = 88/272 (32%), Gaps = 40/272 (14%)
Query: 240 LHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQ 299
R+ + +P+ ++ LD+S N + L +L+ L + S +
Sbjct: 7 SGVCDGRSRSFTSIPSGL---TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN 63
Query: 300 RISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYT 359
I F + SL+ L LS N L +L S F L+ L L L L T N T
Sbjct: 64 TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123
Query: 360 YPDLEELRLSG-NPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPD 418
+L+ LR+ + F L
Sbjct: 124 --NLQTLRIGNVETFSEIRRID---------------FAGL-----------------TS 149
Query: 419 LEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNN 478
L EL + L + +L + + L L + +L + ++ L L + N
Sbjct: 150 LNELEIKALSLRNYQSQSLKS--IRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN 207
Query: 479 LSMTSELSFQFLDVLLELESLDLSNNNLTHIS 510
L+ +V ++ L + LT S
Sbjct: 208 LARFQFSPLPVDEVSSPMKKLAFRGSVLTDES 239
Score = 87.9 bits (218), Expect = 3e-18
Identities = 34/233 (14%), Positives = 69/233 (29%), Gaps = 39/233 (16%)
Query: 311 SLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSG 370
+ ++ SGL + L L+ +T + +L+ L L
Sbjct: 6 ASGVCDGRSRSFTSIPSGLTAAMKSLD---LSFNKITYIGHGDLRA---CANLQVLILKS 59
Query: 371 NPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILN----------ETVFHENYTYPDLE 420
+ ++ + F L L L+ + F L+
Sbjct: 60 SRINTIEGDA---------------FYSLGSLEHLDLSDNHLSSLSSSWFGPL---SSLK 101
Query: 421 ELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRC-KIDYLPPNVFNNTRNITSLNLANNNL 479
L L GNP L +L P L+ L++L + + F ++ L + +L
Sbjct: 102 YLNLMGNPYQTLGVTSLF-PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160
Query: 480 SMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKC 532
Q L + ++ L L + + ++ ++L
Sbjct: 161 ---RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR 210
Score = 47.0 bits (112), Expect = 2e-05
Identities = 12/86 (13%), Positives = 26/86 (30%), Gaps = 6/86 (6%)
Query: 443 SRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLS 502
D +P + SL+L+ N ++ + L+ L L
Sbjct: 5 DASGVCDGRSRSFTSIPSGLTAAM---KSLDLSFNKITYIGHGDLRA---CANLQVLILK 58
Query: 503 NNNLTHISPTVLRHNRAITSIKLVGN 528
++ + I ++ + L N
Sbjct: 59 SSRINTIEGDAFYSLGSLEHLDLSDN 84
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 241 bits (617), Expect = 2e-71
Identities = 116/545 (21%), Positives = 205/545 (37%), Gaps = 48/545 (8%)
Query: 17 PGLITINLNANPIQPV-EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP 75
++L+ NP++ + +F L L + C + I + +L+ L+ L L+GNP
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 76 LRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLG 135
++ + G F L+SL+ L+ NL + +L LK L ++ N ++S
Sbjct: 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS-FKLPEYFS 146
Query: 136 NLGKLDTLDLRQSGISNLPDNVFANNTWLRN----LNLAENELIDLDVATTLGQNLVHLD 191
NL L+ LDL + I ++ + L+L+ N + + L
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHK-- 204
Query: 192 SLDLSNCHLKGPLSEDAFVNATKLRTLYL------SGNPLSAADLSVALKPLTKLHRLSL 245
L L N + + L L + L D S AL+ L L
Sbjct: 205 -LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS-ALEGLCNLTIEEF 262
Query: 246 RNCGLSRLPANTFHRFTCLQEL---DISHNPL--IDAFTALLSPLESLEHLDMGYSNLQR 300
R L + F CL + + + + F+ + LE ++ +
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG-WQHLELVNCKFGQFP- 320
Query: 301 ISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTY 360
LK+ SLK L + NK S +L L L+L+ GL+ ++
Sbjct: 321 -----TLKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQ-SDFGT 372
Query: 361 PDLEELRLSGNPLHVLPDSTKQY-SMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDL 419
L+ L LS N + + + + + +F + + +VF +L
Sbjct: 373 TSLKYLDLSFNGVITMSSNFLGLEQLEHL------DFQHSNLKQMSEFSVFLSL---RNL 423
Query: 420 EELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKI-DYLPPNVFNNTRNITSLNLANNN 478
L +S V G LS L L ++ + P++F RN+T L+L+
Sbjct: 424 IYLDISHTHTRVAFNGIF--NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481
Query: 479 LSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCN-IA 537
L +LS + L L+ L++++N L + + ++ I L NPW C C I
Sbjct: 482 L---EQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 538
Query: 538 DMWEW 542
+ W
Sbjct: 539 YLSRW 543
Score = 157 bits (399), Expect = 4e-41
Identities = 61/343 (17%), Positives = 117/343 (34%), Gaps = 25/343 (7%)
Query: 14 LDNPGLITINLNANPIQP--VEGAFLVARSL------LYLYMQECTLSKINPQFFTNLTT 65
L + L N ++ L L + E L K + L
Sbjct: 197 FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256
Query: 66 LNKLDLSGNPLRIIE---PGVFDPLTSLEYLMLNRCNLTYISPSAFD-NLNHLKTLELSQ 121
L + L +F+ LT++ L + + +++ HL+ +
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKF 316
Query: 122 NKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVAT 181
+ + L L L + N + L L+L+ N L +
Sbjct: 317 GQFPTL--------KLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCS 366
Query: 182 TLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLH 241
L LDLS + F+ +L L + L L L
Sbjct: 367 QSDFGTTSLKYLDLSFNGVIT--MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424
Query: 242 RLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTA-LLSPLESLEHLDMGYSNLQR 300
L + + F+ + L+ L ++ N + F + + L +L LD+ L++
Sbjct: 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 484
Query: 301 ISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNN 343
+S + F ++SL+ L ++ N+L+++ G+F LT L + L+
Sbjct: 485 LSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHT 527
Score = 137 bits (347), Expect = 2e-34
Identities = 58/313 (18%), Positives = 104/313 (33%), Gaps = 38/313 (12%)
Query: 13 NLDNPGLITINLNANPIQPVE--GAFLVARSLLYLYMQECTLSKINP-QFFTNLTTLNKL 69
L N + L + F ++ + T+ ++ + L +
Sbjct: 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELV 312
Query: 70 DLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHID 129
+ L SL+ L + +L L+ L+LS+N L
Sbjct: 313 NCKFGQFP------TLKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGC 364
Query: 130 WTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVH 189
+ L LDL +G+ + N F L +L+ + L + + +L +
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVF-LSLRN 422
Query: 190 LDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCG 249
L LD+S+ H + F + L L ++GN L L L L L C
Sbjct: 423 LIYLDISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481
Query: 250 LSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKM 309
L +L F+ + LQ L+++ N L+ + F ++
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMASN------------------------QLKSVPDGIFDRL 517
Query: 310 TSLKTLILSGNKL 322
TSL+ + L N
Sbjct: 518 TSLQKIWLHTNPW 530
Score = 88.2 bits (219), Expect = 2e-18
Identities = 45/213 (21%), Positives = 71/213 (33%), Gaps = 42/213 (19%)
Query: 313 KTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNP 372
T + L + +L L+ L L F +P+L+ L LS
Sbjct: 10 ITYQCMELNFYKIPDNLPFSTKNLD---LSFNPLRHLGSYSFFS---FPELQVLDLSRCE 63
Query: 373 LHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVL 432
+ + D + L L L L+GNP+ L
Sbjct: 64 IQTIEDGA---------------YQSL-----------------SHLSTLILTGNPIQSL 91
Query: 433 PTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDV 492
G LS L+ L + L + + + LN+A+N + S ++
Sbjct: 92 ALGAFS--GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI--QSFKLPEYFSN 147
Query: 493 LLELESLDLSNNNLTHISPTVLRHNRAITSIKL 525
L LE LDLS+N + I T LR + + L
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180
Score = 47.4 bits (113), Expect = 1e-05
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 447 SLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNL 506
+ +P N+ +T +L+L+ N L SF EL+ LDLS +
Sbjct: 11 TYQCMELNFYKIPDNLPFST---KNLDLSFNPLRHLGSYSFFSF---PELQVLDLSRCEI 64
Query: 507 THISPTVLRHNRAITSIKLVGNP 529
I + ++++ L GNP
Sbjct: 65 QTIEDGAYQSLSHLSTLILTGNP 87
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 231 bits (592), Expect = 2e-67
Identities = 119/547 (21%), Positives = 211/547 (38%), Gaps = 52/547 (9%)
Query: 17 PGLITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP 75
P L ++L+ IQ +E GA+ L L + + + F+ L++L KL
Sbjct: 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111
Query: 76 LRIIEPGVFDPLTSLEYLMLNRCNLTYIS-PSAFDNLNHLKTLELSQNKLKSHIDWTL-V 133
L +E L +L+ L + + P F NL +L+ L+LS NK++S L V
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171
Query: 134 LGNLGKLD-TLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDS 192
L + L+ +LDL + ++ + F L L L N L+V T Q L L+
Sbjct: 172 LHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNN-FDSLNVMKTCIQGLAGLEV 229
Query: 193 LDLSNCHLKG-----PLSEDAFVNATKLR--TLYLSGNPLSAADLSVALKPLTKLHRLSL 245
L + + A L L+ D+ LT + SL
Sbjct: 230 HRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSL 289
Query: 246 RNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRST 305
+ + R+ ++ Q L++ + T L L+ L ++ + + +
Sbjct: 290 VSVTIERVKDFSY--NFGWQHLELVNCKFGQFPTLKLKSLKRLTF-----TSNKGGNAFS 342
Query: 306 FLKMTSLKTLILSGNKLETLE--SGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDL 363
+ + SL+ L LS N L S T L L+L+ G+ ++ L
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG----LEQL 398
Query: 364 EELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFI-------LNETVFHENYTY 416
E L + L + ++ + L+ L I +F+
Sbjct: 399 EHLDFQHSNLKQM-----------SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL--- 444
Query: 417 PDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLAN 476
LE L+++GN ++ +L L LDLS+C+++ L P FN+ ++ LN+++
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFT-ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503
Query: 477 NNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHN-RAITSIKLVGNPWKCDCN 535
NN ++ L L+ LD S N++ L+H ++ + L N + C C
Sbjct: 504 NNFFSLDTFPYKC---LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560
Query: 536 IADMWEW 542
+W
Sbjct: 561 HQSFLQW 567
Score = 213 bits (545), Expect = 8e-61
Identities = 104/504 (20%), Positives = 175/504 (34%), Gaps = 42/504 (8%)
Query: 40 RSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCN 99
S L + L + F + L LDLS ++ IE G + L+ L L+L
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 100 LTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLP-DNVF 158
+ ++ AF L+ L+ L + L S ++ +G+L L L++ + I + F
Sbjct: 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYF 145
Query: 159 ANNTWLRNLNLAENELIDLDVAT--TLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLR 216
+N T L +L+L+ N++ + L Q + SLDLS + + AF +L
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKE-IRLH 203
Query: 217 TLYLSGNPLSAADLSVALKPLTKLHRLSL---RNCGLSRLPANTFHRFTCLQELDISHNP 273
L L N S + ++ L L L L L L I
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263
Query: 274 L------IDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLES 327
L +D L + L ++ + ++R+ ++ + L L K +
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN--FGWQHLELVNCKFGQFPT 321
Query: 328 GLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRT 387
++L L+ + P LE L LS N L S +
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSEVD--------LPSLEFLDLSRNGL----------SFKG 363
Query: 388 IPTQIWKNFDFLVILFILN---ETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSR 444
+Q L L + T+ LE L + L + ++ L
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF-LSLRN 422
Query: 445 LRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNN 504
L LD+S +FN ++ L +A N+ L L LDLS
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD--IFTELRNLTFLDLSQC 480
Query: 505 NLTHISPTVLRHNRAITSIKLVGN 528
L +SPT ++ + + N
Sbjct: 481 QLEQLSPTAFNSLSSLQVLNMSHN 504
Score = 152 bits (386), Expect = 3e-39
Identities = 66/336 (19%), Positives = 120/336 (35%), Gaps = 18/336 (5%)
Query: 13 NLDNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLS 72
++ L ++ + I + ++ + T+ ++ F+ L+L
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCL---TNVSSFSLVSVTIERVKD--FSYNFGWQHLELV 312
Query: 73 GNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTL 132
L L + + + + +L L+ L+LS+N L +
Sbjct: 313 NCKFGQFPTLKLKSLKRLTFT-----SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQ 367
Query: 133 VLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDS 192
L LDL +G+ + N F L +L+ + L + + +L +L
Sbjct: 368 SDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVF-LSLRNLIY 425
Query: 193 LDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSR 252
LD+S+ H + F + L L ++GN L L L L L C L +
Sbjct: 426 LDISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 484
Query: 253 LPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKM-TS 311
L F+ + LQ L++SHN T L SL+ LD +++ + +S
Sbjct: 485 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS 544
Query: 312 LKTLILSGNKLE-TLESGLFQ---NLTHLSVLELNN 343
L L L+ N T E F ++E+
Sbjct: 545 LAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVER 580
Score = 97.0 bits (242), Expect = 4e-21
Identities = 52/224 (23%), Positives = 80/224 (35%), Gaps = 40/224 (17%)
Query: 309 MTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRL 368
S K L LS N L L S F + L VL+L+ C + + + + L L L
Sbjct: 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL---SHLSTLIL 83
Query: 369 SGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNP 428
+GNP+ L F L L++L
Sbjct: 84 TGNPIQSLALGA---------------FSGL-----------------SSLQKLVAVETN 111
Query: 429 LHVLPTGNLLPPQLSRLRSLDLSRCKIDYLP-PNVFNNTRNITSLNLANNNLSMTSELSF 487
L L + L L+ L+++ I P F+N N+ L+L++N +
Sbjct: 112 LASLENFPI--GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169
Query: 488 QFLDVL-LELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPW 530
+ L + L SLDLS N + I P + R + + L N
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFD 212
Score = 46.6 bits (111), Expect = 2e-05
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 447 SLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNL 506
+ +P N+ +T+N L+L+ N L SF EL+ LDLS +
Sbjct: 11 TYQCMELNFYKIPDNLPFSTKN---LDLSFNPLRHLGSYSFFS---FPELQVLDLSRCEI 64
Query: 507 THISPTVLRHNRAITSIKLVGNP 529
I + ++++ L GNP
Sbjct: 65 QTIEDGAYQSLSHLSTLILTGNP 87
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 205 bits (523), Expect = 7e-59
Identities = 93/379 (24%), Positives = 143/379 (37%), Gaps = 68/379 (17%)
Query: 52 LSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNL 111
+ T L DL N ++ + F LE L LN ++ + P AF+NL
Sbjct: 23 FVAVPEGIPTETRLL---DLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNL 79
Query: 112 NHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAE 171
+L+TL L N+LK I V L L LD+ ++ I L D +F + L++L + +
Sbjct: 80 FNLRTLGLRSNRLKL-IP-LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD 137
Query: 172 NELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLS 231
N+L+ + S AF L L L L++ +
Sbjct: 138 NDLVYI---------------------------SHRAFSGLNSLEQLTLEKCNLTSIP-T 169
Query: 232 VALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHL 291
AL L L L LR+ ++ + +F R L+ L+ISH P +D T +L L
Sbjct: 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSL 229
Query: 292 DMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNE 351
+ + NL + + L+ L LS N + T+E + L L ++L L +
Sbjct: 230 SITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP 289
Query: 352 TVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFH 411
F L L +SGN L L +S F +
Sbjct: 290 YAFRGL---NYLRVLNVSGNQLTTLEESV---------------FHSV------------ 319
Query: 412 ENYTYPDLEELRLSGNPLH 430
+LE L L NPL
Sbjct: 320 -----GNLETLILDSNPLA 333
Score = 204 bits (521), Expect = 1e-58
Identities = 81/354 (22%), Positives = 142/354 (40%), Gaps = 42/354 (11%)
Query: 192 SLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLS 251
LDL +K L++D F + L L L+ N +SA + A L L L LR+ L
Sbjct: 36 LLDLGKNRIKT-LNQDEFASFPHLEELELNENIVSAVE-PGAFNNLFNLRTLGLRSNRLK 93
Query: 252 RLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTS 311
+P F + L +LDIS N ++ + L +L+ L++G ++L IS F + S
Sbjct: 94 LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS 153
Query: 312 LKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGN 371
L+ L L L ++ + +L L VL L + + + + F L+ L +S
Sbjct: 154 LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRL---YRLKVLEISHW 210
Query: 372 PLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHV 431
P + T+ +L L ++ L
Sbjct: 211 PY-----------LDTMTPNCLYG---------------------LNLTSLSITHCNLTA 238
Query: 432 LPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLD 491
+P + L LR L+LS I + ++ + + + L L++ +F+ L+
Sbjct: 239 VPYLAVRH--LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLN 296
Query: 492 VLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEWATR 545
L L++S N LT + +V + ++ L NP CDC + ++ R
Sbjct: 297 ---YLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWR 347
Score = 204 bits (520), Expect = 2e-58
Identities = 82/361 (22%), Positives = 134/361 (37%), Gaps = 60/361 (16%)
Query: 16 NPGLITINLNANPIQPV-EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGN 74
++L N I+ + + F L L + E +S + P F NL L L L N
Sbjct: 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90
Query: 75 PLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVL 134
L++I GVF L++L L ++ + + F +L +LK+LE+ N
Sbjct: 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND----------- 139
Query: 135 GNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLD 194
+ + F+ L L L + L +
Sbjct: 140 ---------------LVYISHRAFSGLNSLEQLTLEKCNLTSIP---------------- 168
Query: 195 LSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSL-RNCGLSRL 253
+A + L L L ++A + K L +L L + L +
Sbjct: 169 -----------TEALSHLHGLIVLRLRHLNINAIR-DYSFKRLYRLKVLEISHWPYLDTM 216
Query: 254 PANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLK 313
N + L L I+H L + L L L++ Y+ + I S ++ L+
Sbjct: 217 TPNCLYGLN-LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQ 275
Query: 314 TLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPL 373
+ L G +L +E F+ L +L VL ++ LT L E+VFH +LE L L NPL
Sbjct: 276 EIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSV---GNLETLILDSNPL 332
Query: 374 H 374
Sbjct: 333 A 333
Score = 66.3 bits (162), Expect = 1e-11
Identities = 25/112 (22%), Positives = 41/112 (36%), Gaps = 8/112 (7%)
Query: 417 PDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLAN 476
+ +P G +P R LDL + +I L + F + ++ L L
Sbjct: 11 AQDRAVLCHRKRFVAVPEG--IPT---ETRLLDLGKNRIKTLNQDEFASFPHLEELELNE 65
Query: 477 NNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGN 528
N +S +F L L +L L +N L I V +T + + N
Sbjct: 66 NIVSAVEPGAFNNLF---NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN 114
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 188 bits (480), Expect = 5e-53
Identities = 87/493 (17%), Positives = 151/493 (30%), Gaps = 116/493 (23%)
Query: 64 TTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNL-TYISPSAFDNLNHLKTLELSQN 122
+N +DLS N + + F L L++L + + I + F L+ L L+L N
Sbjct: 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89
Query: 123 KLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATT 182
+ L F L L L + L ++
Sbjct: 90 QFLQ--------------------------LETGAFNGLANLEVLTLTQCNLDGAVLSGN 123
Query: 183 LGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHR 242
+ L L+ L L + ++K F+N + L L+ N + +
Sbjct: 124 FFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS--------------- 168
Query: 243 LSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRIS 302
+ F + L S+ DM L
Sbjct: 169 ----------ICEEDLLNFQGKHFTLLR--------------LSSITLQDMNEYWLGWEK 204
Query: 303 RSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENY---- 358
K TS+ TL LSGN + + F + + ++ + + F
Sbjct: 205 CGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP 264
Query: 359 --------TYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVF 410
++ LS + + L S F
Sbjct: 265 DNFTFKGLEASGVKTCDLSKSKIFALLKSV---------------FSHF----------- 298
Query: 411 HENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNIT 470
DLE+L L+ N ++ + L+ L L+LS+ + + +F N +
Sbjct: 299 ------TDLEQLTLAQNEINKIDDNAFW--GLTHLLKLNLSQNFLGSIDSRMFENLDKLE 350
Query: 471 SLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPW 530
L+L+ N++ + SF L L+ L L N L + + ++ I L NPW
Sbjct: 351 VLDLSYNHIRALGDQSFLGLP---NLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407
Query: 531 KCDCN-IADMWEW 542
C C I + W
Sbjct: 408 DCSCPRIDYLSRW 420
Score = 184 bits (470), Expect = 9e-52
Identities = 96/410 (23%), Positives = 154/410 (37%), Gaps = 58/410 (14%)
Query: 44 YLYMQECTLSKINPQFFTNLTTLNKLDLSGNPL-RIIEPGVFDPLTSLEYLMLNRCNLTY 102
Y+ + +++++N F+ L L L + +I F L+SL L L+
Sbjct: 34 YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ 93
Query: 103 ISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNL-PDNVFANN 161
+ AF+ L +L+ L L+Q L + L L+ L LR + I + P + F N
Sbjct: 94 LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM 153
Query: 162 TWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLK-------GPLSEDAFVNATK 214
L+L N++ + L H L LS+ L+ G T
Sbjct: 154 RRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTS 213
Query: 215 LRTLYLSGNPLSA--ADLSVALKPLTKLHRLSLRNCG----------LSRLPANTFHRFT 262
+ TL LSGN A TK+ L L N TF
Sbjct: 214 ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLE 273
Query: 263 C--LQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGN 320
++ D+S + + ++ S LE L + + + +I + F +T L L LS N
Sbjct: 274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN 333
Query: 321 KLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDST 380
L +++S +F+NL L VL+L+ + L + F P+L+EL L N L +PD
Sbjct: 334 FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGL---PNLKELALDTNQLKSVPDGI 390
Query: 381 KQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLH 430
FD L L+++ L NP
Sbjct: 391 ---------------FDRL-----------------TSLQKIWLHTNPWD 408
Score = 94.0 bits (234), Expect = 1e-20
Identities = 44/162 (27%), Positives = 71/162 (43%), Gaps = 27/162 (16%)
Query: 12 RNLDNPGLITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLD 70
+ L+ G+ T +L+ + I + F L L + + ++KI+ F LT L KL+
Sbjct: 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLN 329
Query: 71 LSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDW 130
LS N L I+ +F+ L LE L L+ ++ + +F L +LK L L N+LKS
Sbjct: 330 LSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS---- 385
Query: 131 TLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAEN 172
+PD +F T L+ + L N
Sbjct: 386 ----------------------VPDGIFDRLTSLQKIWLHTN 405
Score = 50.1 bits (120), Expect = 1e-06
Identities = 14/91 (15%), Positives = 28/91 (30%), Gaps = 2/91 (2%)
Query: 438 LPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELE 497
+P + + +DLS I L F+ +++ L + + + L L
Sbjct: 25 VPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLV--IRNNTFRGLSSLI 82
Query: 498 SLDLSNNNLTHISPTVLRHNRAITSIKLVGN 528
L L N + + + L
Sbjct: 83 ILKLDYNQFLQLETGAFNGLANLEVLTLTQC 113
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 192 bits (490), Expect = 5e-52
Identities = 80/547 (14%), Positives = 171/547 (31%), Gaps = 87/547 (15%)
Query: 12 RNLDNPGLITINLNANP-IQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLD 70
+ L+ L+ +N NP ++P++ ++ + ++ I + LT L +
Sbjct: 396 QRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFI-SKAIQRLTKLQIIY 454
Query: 71 LSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDW 130
+ +P V E + ++ NL L +EL + +
Sbjct: 455 FANSPFTYDNIAVD-----WEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP- 508
Query: 131 TLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHL 190
L +L +L +L++ + + + + +
Sbjct: 509 -DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDED-----------------TGPKI 550
Query: 191 DSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGL 250
+ +L+ + + KL L N + + A KL L L +
Sbjct: 551 QIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE---AFGTNVKLTDLKLDYNQI 607
Query: 251 SRLPANTFHRFTCLQELDISHNPLID-AFTALLSPLESLEHLDMGYSNLQRISRSTF--- 306
+P + ++ L SHN L + + +D Y+ + R+
Sbjct: 608 EEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667
Query: 307 --LKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTY---- 360
K + T+ LS N+++ + LF + +S + L+N +T + E
Sbjct: 668 DDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNT 727
Query: 361 PDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLE 420
L + L N L L D + ++ P L
Sbjct: 728 YLLTTIDLRFNKLTSLSDDFRATTL-------------------------------PYLS 756
Query: 421 ELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDY------LPPNVFNNTRNITSLNL 474
+ +S N PT P S+L++ + + P ++ L +
Sbjct: 757 NMDVSYNCFSSFPTQ---PLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI 813
Query: 475 ANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWK--C 532
+N++ E + +L LD+++N I T + L+ + +
Sbjct: 814 GSNDIRKVDE------KLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIR 867
Query: 533 DCNIADM 539
C+ +
Sbjct: 868 GCDALGI 874
Score = 189 bits (482), Expect = 7e-51
Identities = 87/484 (17%), Positives = 151/484 (31%), Gaps = 67/484 (13%)
Query: 50 CTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFD 109
N + L L+G + P LT L+ L + T D
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368
Query: 110 NLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNL 169
E +++++ H + L +L+ DL Q I+ P+ ++L
Sbjct: 369 EELTPDMSEERKHRIRMHYK-KMFLDYDQRLNLSDLLQDAINRNPE--MKPIKKDSRISL 425
Query: 170 AENELIDLDVATTLG----QNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPL 225
+ ++ +L T Q L L + +N A
Sbjct: 426 KDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTY------DNIAVDWEDANSDYAKQ 479
Query: 226 SAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLID--------- 276
+ ++ L L + L NC + + LQ L+I+ N I
Sbjct: 480 Y-ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWT 538
Query: 277 AFTALLSPLESLEHLDMGYSNLQRISRSTFL-KMTSLKTLILSGNKLETLESGLFQNLTH 335
++ MGY+NL+ S L KM L L NK+ LE+ F
Sbjct: 539 RLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEA--FGTNVK 596
Query: 336 LSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKN 395
L+ L+L+ + + E +E L S N L +P+ S+
Sbjct: 597 LTDLKLDYNQIEEIPEDFCAFT---DQVEGLGFSHNKLKYIPNIFNAKSVYV-------- 645
Query: 396 FDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPP---QLSRLRSLDLSR 452
+ + S N + + ++ LS
Sbjct: 646 -----------------------MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSY 682
Query: 453 CKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDV----LLELESLDLSNNNLTH 508
+I P +F I+++ L+NN ++ E S + D L ++DL N LT
Sbjct: 683 NEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS 742
Query: 509 ISPT 512
+S
Sbjct: 743 LSDD 746
Score = 140 bits (355), Expect = 7e-35
Identities = 53/434 (12%), Positives = 113/434 (26%), Gaps = 55/434 (12%)
Query: 103 ISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNT 162
+N H ++ + L N G++ L L G + T
Sbjct: 288 YYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLT 347
Query: 163 WLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSG 222
L+ L+ + G + D + ++ + +L L
Sbjct: 348 ELKVLSFGTHSETVS--GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQ 405
Query: 223 NPLSAADLSVALKPLTKLH----RLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAF 278
+ ++ +K +++ ++ ++ + R T LQ + +++P
Sbjct: 406 DAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISK-AIQRLTKLQIIYFANSPF---- 460
Query: 279 TALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSV 338
+ E + Y+ ++ + L + L T +L L
Sbjct: 461 -TYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519
Query: 339 LELNNCGLTRLNETVFHENYTYPD------LEELRLSGNPLHVLPDSTKQYSMRTIPTQI 392
L + + D ++ + N L P S M
Sbjct: 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMV------ 573
Query: 393 WKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSR 452
L L N + L +L L L
Sbjct: 574 -------------------------KLGLLDCVHNKVRHLEAFG----TNVKLTDLKLDY 604
Query: 453 CKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPT 512
+I+ +P + T + L ++N L + + + S+D S N +
Sbjct: 605 NQIEEIPEDFCAFTDQVEGLGFSHNKL--KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRN 662
Query: 513 VLRHNRAITSIKLV 526
+ I
Sbjct: 663 ISCSMDDYKGINAS 676
Score = 112 bits (282), Expect = 6e-26
Identities = 38/357 (10%), Positives = 95/357 (26%), Gaps = 62/357 (17%)
Query: 186 NLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSL 245
N + L L+ KG + DA T+L+ L + + + + LT
Sbjct: 321 NNGRVTGLSLAGFGAKGRVP-DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEER 379
Query: 246 RNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISR-- 303
++ L D+ + + + P++ + + + + ++
Sbjct: 380 KHRIRMHYKKMFLDYDQRLNLSDLLQDAINR--NPEMKPIKKDSRISLKDTQIGNLTNRI 437
Query: 304 ----STFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYT 359
++T L+ + + + + + E +
Sbjct: 438 TFISKAIQRLTKLQIIYFANSPFTYDNIAVD-----WEDANSDYAKQYENEELSWSNL-- 490
Query: 360 YPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDL 419
DL ++ L P M +P ++ P+L
Sbjct: 491 -KDLTDVELYNCPN-----------MTQLPDFLYD---------------------LPEL 517
Query: 420 EELRLSGNPLHVLPTG----NLLPP---QLSRLRSLDLSRCKIDYLPPNV-FNNTRNITS 471
+ L ++ N L +++ + ++ P + +
Sbjct: 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGL 577
Query: 472 LNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGN 528
L+ +N + ++L L L N + I + + N
Sbjct: 578 LDCVHNKVRHLEAFGT-----NVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHN 629
Score = 41.4 bits (97), Expect = 0.001
Identities = 11/82 (13%), Positives = 22/82 (26%), Gaps = 3/82 (3%)
Query: 447 SLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNL 506
+ + P +N +T L+LA + L EL+ L ++
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLT---ELKVLSFGTHSE 359
Query: 507 THISPTVLRHNRAITSIKLVGN 528
T + +
Sbjct: 360 TVSGRLFGDEELTPDMSEERKH 381
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 181 bits (462), Expect = 4e-51
Identities = 73/383 (19%), Positives = 146/383 (38%), Gaps = 36/383 (9%)
Query: 7 VYNDRRNLDNPGLITINLNANPIQPV-EGAFLVARSLLYLYMQECTLSKINPQFFTNLTT 65
VY ++ + + ++ + R + L + + + +I+ F T
Sbjct: 35 VYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHT 94
Query: 66 LNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLK 125
+ KL + N +R + P VF + L L+L R +L+ + F N L TL +S N L
Sbjct: 95 IQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL- 153
Query: 126 SHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQ 185
I+ L L L + ++++ ++ + L + N++ N L L
Sbjct: 154 ERIEDD-TFQATTSLQNLQLSSNRLTHVDLSLIPS---LFHANVSYNLLSTLA------- 202
Query: 186 NLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSL 245
+ ++ LD S+ + + V L L L N L+ L L + L
Sbjct: 203 IPIAVEELDASHNSINV-VRGPVNVE---LTILKLQHNNLTDTA---WLLNYPGLVEVDL 255
Query: 246 RNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRST 305
L ++ + F + L+ L IS+N + A P+ +L+ LD+ +++L + R+
Sbjct: 256 SYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHLLHVERNQ 314
Query: 306 FLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELN---NCGLTRLNETVFHENYTYPD 362
+ L+ L L N + TL+ L +L++ + N +
Sbjct: 315 P-QFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRALF-----------RN 362
Query: 363 LEELRLSGNPLHVLPDSTKQYSM 385
+ + H D ++ +
Sbjct: 363 VARPAVDDADQHCKIDYQLEHGL 385
Score = 176 bits (447), Expect = 4e-49
Identities = 90/412 (21%), Positives = 148/412 (35%), Gaps = 67/412 (16%)
Query: 62 NLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQ 121
+ + + L + + + + + + D+ ++ L L+
Sbjct: 19 YDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLND 78
Query: 122 NKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVAT 181
++ ID T + L + + I LP +VF N L L L N+L L
Sbjct: 79 LQI-EEID-TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP--R 134
Query: 182 TLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSV--------- 232
+ N L +L +SN +L+ + +D F T L+ L LS N L+ DLS+
Sbjct: 135 GIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANV 193
Query: 233 ------ALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLE 286
L + L + ++ + L L + HN L D TA L
Sbjct: 194 SYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE---LTILKLQHNNLTD--TAWLLNYP 248
Query: 287 SLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGL 346
L +D+ Y+ L++I F+KM L+ L +S N+L L + Q + L VL+L++ L
Sbjct: 249 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHL 307
Query: 347 TRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILN 406
+ + LE L L N + L S
Sbjct: 308 LHVERNQPQ----FDRLENLYLDHNSIVTLKLS--------------------------- 336
Query: 407 ETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSR-CKIDY 457
T+ L+ L LS N L ++R D + CKIDY
Sbjct: 337 --------THHTLKNLTLSHNDWDCNSL-RALFRNVARPAVDDADQHCKIDY 379
Score = 170 bits (434), Expect = 2e-47
Identities = 88/431 (20%), Positives = 148/431 (34%), Gaps = 68/431 (15%)
Query: 105 PSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWL 164
S + + + + + L + + S + LP + + +
Sbjct: 14 DSNLQYDCVFYDVHIDMQTQDVYFGFEDI--TLNNQKIVTFKNSTMRKLPAALLDSFRQV 71
Query: 165 RNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNP 224
LNL + ++ ++D + L + ++ L F N L L L N
Sbjct: 72 ELLNLNDLQIEEIDTYAF--AYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERND 128
Query: 225 LSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTAL-LS 283
LS+ KL LS+ N L R+ +TF T LQ L +S N L T + LS
Sbjct: 129 LSSLPRG-IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL----THVDLS 183
Query: 284 PLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNN 343
+ SL H ++ Y+ L ++ +++ L S N + + + LT L L +
Sbjct: 184 LIPSLFHANVSYNLLSTLA-----IPIAVEELDASHNSINVVRGPVNVELTILK---LQH 235
Query: 344 CGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILF 403
LT + YP L E+ LS N L + F +
Sbjct: 236 NNLTDTAWLL-----NYPGLVEVDLSYNELEKIMYHP---------------FVKM---- 271
Query: 404 ILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVF 463
LE L +S N L L L + L+ LDLS + ++ N
Sbjct: 272 -------------QRLERLYISNNRLVALN---LYGQPIPTLKVLDLSHNHLLHVERNQP 315
Query: 464 NNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSI 523
+ +L L +N++ L L++L LS+N+ S L N +
Sbjct: 316 QFD-RLENLYLDHNSI---VTLKL---STHHTLKNLTLSHNDWDCNSLRALFRN--VARP 366
Query: 524 KLVGNPWKCDC 534
+ C
Sbjct: 367 AVDDADQHCKI 377
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 182 bits (464), Expect = 8e-50
Identities = 86/520 (16%), Positives = 183/520 (35%), Gaps = 48/520 (9%)
Query: 7 VYNDRRNLDNPGLITINLNANPIQPV-EGAFLVARSLLYLYMQECTLSKINPQFFTNLTT 65
VY ++ + + ++ + R + L + + + +I+ F T
Sbjct: 41 VYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHT 100
Query: 66 LNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLK 125
+ KL + N +R + P VF + L L+L R +L+ + F N L TL +S N L
Sbjct: 101 IQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL- 159
Query: 126 SHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQ 185
I+ L L L + ++++ ++ + L + N++ N L L
Sbjct: 160 ERIEDD-TFQATTSLQNLQLSSNRLTHVDLSLIPS---LFHANVSYNLLSTLA------- 208
Query: 186 NLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSL 245
+ ++ LD S+ + + V L L L N L+ L L + L
Sbjct: 209 IPIAVEELDASHNSINV-VRGPVNVE---LTILKLQHNNLTDTA---WLLNYPGLVEVDL 261
Query: 246 RNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRST 305
L ++ + F + L+ L IS+N + A P+ +L+ LD+ +++L + R+
Sbjct: 262 SYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHLLHVERNQ 320
Query: 306 FLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELN---NCGLTRLNETVFHENYTYPD 362
+ L+ L L N + TL+ L +L++ + N +
Sbjct: 321 P-QFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRALF-----------RN 368
Query: 363 LEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEEL 422
+ + H D ++ + + K + ++ +I +V ++
Sbjct: 369 VARPAVDDADQHCKIDYQLEHGLCCKESD--KPYLDRLLQYIALTSVVE------KVQRA 420
Query: 423 RLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMT 482
+ + + + L +++ + L + N L N +
Sbjct: 421 QGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQ----QLTNEQIQQE 476
Query: 483 SELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITS 522
L ++ L L + L S + + +
Sbjct: 477 QLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKE 516
Score = 173 bits (440), Expect = 2e-46
Identities = 95/478 (19%), Positives = 166/478 (34%), Gaps = 73/478 (15%)
Query: 62 NLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQ 121
+ + + L + + + + + + D+ ++ L L+
Sbjct: 25 YDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLND 84
Query: 122 NKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVAT 181
+++ ID T + L + + I LP +VF N L L L N+L L
Sbjct: 85 LQIEE-ID-TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI 142
Query: 182 TLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSV--------- 232
N L +L +SN +L+ + +D F T L+ L LS N L+ DLS+
Sbjct: 143 F--HNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANV 199
Query: 233 ------ALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLE 286
L + L + ++ + L L + HN L D TA L
Sbjct: 200 SYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE---LTILKLQHNNLTD--TAWLLNYP 254
Query: 287 SLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGL 346
L +D+ Y+ L++I F+KM L+ L +S N+L L + Q + L VL+L++ L
Sbjct: 255 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHL 313
Query: 347 TRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILN 406
+ + LE L L N + L S
Sbjct: 314 LHVERNQPQ----FDRLENLYLDHNSIVTLKLS--------------------------- 342
Query: 407 ETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSR-CKIDYLPPNVF-- 463
T+ L+ L LS N L ++R D + CKIDY +
Sbjct: 343 --------THHTLKNLTLSHNDWDCNSL-RALFRNVARPAVDDADQHCKIDYQLEHGLCC 393
Query: 464 ----NNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHN 517
+ +A ++ + + + S+ ++ +T L+ N
Sbjct: 394 KESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGN 451
Score = 131 bits (331), Expect = 3e-32
Identities = 61/303 (20%), Positives = 102/303 (33%), Gaps = 44/303 (14%)
Query: 236 PLTKLHRLSLRNCGLSRLPANTFHRFTC-----LQELDISHNPLIDAFTALLSPLESLEH 290
+ + + + + F + + ++ + ALL +E
Sbjct: 20 DSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL 79
Query: 291 LDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLN 350
L++ ++ I F +++ L + N + L +FQN+ L+VL L L+ L
Sbjct: 80 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 139
Query: 351 ETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILN---- 406
+FH P L L +S N L + D T F L L
Sbjct: 140 RGIFHNT---PKLTTLSMSNNNLERIEDDT---------------FQATTSLQNLQLSSN 181
Query: 407 -ETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNN 465
T + P L +S N L L + LD S I+ + V
Sbjct: 182 RLTHVDLS-LIPSLFHANVSYNLLSTLAI-------PIAVEELDASHNSINVVRGPVN-- 231
Query: 466 TRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKL 525
+T L L +NNL+ T+ L L +DLS N L I + + + +
Sbjct: 232 -VELTILKLQHNNLTDTAWLLN-----YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 285
Query: 526 VGN 528
N
Sbjct: 286 SNN 288
Score = 113 bits (285), Expect = 2e-26
Identities = 48/290 (16%), Positives = 99/290 (34%), Gaps = 52/290 (17%)
Query: 239 KLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNL 298
+ + + R + +N + ++ I F L + + + S +
Sbjct: 5 QRYNVKPRQPEYKCIDSNLQY-DCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM 63
Query: 299 QRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENY 358
+++ + ++ L L+ ++E +++ F + L + + L VF
Sbjct: 64 RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV- 122
Query: 359 TYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPD 418
P L L L N L LP F P
Sbjct: 123 --PLLTVLVLERNDLSSLPRGI---------------FHNT-----------------PK 148
Query: 419 LEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNN 478
L L +S N L + + L++L LS ++ ++ ++ ++ N++ N
Sbjct: 149 LTTLSMSNNNLERIEDDTFQA--TTSLQNLQLSSNRLTHVDLSLI---PSLFHANVSYNL 203
Query: 479 LSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGN 528
LS L + + +E LD S+N++ + V +T +KL N
Sbjct: 204 LST--------LAIPIAVEELDASHNSINVVRGPVNVE---LTILKLQHN 242
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 174 bits (443), Expect = 2e-47
Identities = 80/517 (15%), Positives = 160/517 (30%), Gaps = 58/517 (11%)
Query: 40 RSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCN 99
+ L + + +S++ +L+ L L +S N ++ ++ VF LEYL L+
Sbjct: 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80
Query: 100 LTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFA 159
L IS +LK L+LS N + + GN+ +L L L + + A
Sbjct: 81 LVKIS---CHPTVNLKHLDLSFNAFDA-LPICKEFGNMSQLKFLGLSTTHLEKSSVLPIA 136
Query: 160 NNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLY 219
+ + L + + + L + + + + L
Sbjct: 137 HLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN 196
Query: 220 LSGNP---LSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTC-----LQELDISH 271
+ + LS+ K T +L + + + IS+
Sbjct: 197 IKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISN 256
Query: 272 NPLI-----DAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLE 326
L F + L++L + + +++ + + +
Sbjct: 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVH 316
Query: 327 SGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMR 386
++ L+ +N LT +LE L L N L L +
Sbjct: 317 MLCPSKISPFLHLDFSNNLLTDTVFENCG---HLTELETLILQMNQLKELSKIAE----- 368
Query: 387 TIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLR 446
+ + L++L +S N + L
Sbjct: 369 ----------------------MTTQ---MKSLQQLDISQNSVSYDEKKGDC-SWTKSLL 402
Query: 447 SLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNL 506
SL++S + I L+L +N + + + L L+ L++++N L
Sbjct: 403 SLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIKSIPKQVVK----LEALQELNVASNQL 456
Query: 507 THISPTVLRHNRAITSIKLVGNPWKCDCN-IADMWEW 542
+ + ++ I L NPW C C I + W
Sbjct: 457 KSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 493
Score = 116 bits (293), Expect = 9e-28
Identities = 74/443 (16%), Positives = 142/443 (32%), Gaps = 64/443 (14%)
Query: 17 PGLITINLNANPIQ--PVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGN 74
L ++L+ N P+ F L +L + L K + +L L + G
Sbjct: 90 VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGE 149
Query: 75 PLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVL 134
E L+ ++ + + F + + ++ +L +
Sbjct: 150 TYGEKE-----DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLEL-------SNI 197
Query: 135 GNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLD 194
+ + + S ++ L N +N L N+ N I + +
Sbjct: 198 KCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRI----LQLVWHTTVWYFS 253
Query: 195 LSNCHLKGPLSEDAFVNA-TKLRTLYLSGNPLSA--ADLSVALKPLTKLHRLSLRNCGLS 251
+SN L+G L F + T L+ L + S + + ++ + G
Sbjct: 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR 313
Query: 252 RLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRST--FLKM 309
+ + + LD S+N L D L LE L + + L+ +S+ +M
Sbjct: 314 MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQM 373
Query: 310 TSLKTLILSGNKLETLE-SGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRL 368
SL+ L +S N + E G L L +++ LT ++ L L
Sbjct: 374 KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPR-----IKVLDL 428
Query: 369 SGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNP 428
N + +P + L L+EL ++ N
Sbjct: 429 HSNKIKSIPKQ----------------------VVKL-----------EALQELNVASNQ 455
Query: 429 LHVLPTGNLLPPQLSRLRSLDLS 451
L +P G +L+ L+ + L
Sbjct: 456 LKSVPDGIF--DRLTSLQKIWLH 476
Score = 113 bits (283), Expect = 2e-26
Identities = 40/291 (13%), Positives = 87/291 (29%), Gaps = 59/291 (20%)
Query: 35 AFLVARSLLYLYMQECTL-----SKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTS 89
+ ++ Y + L + T+L L+ + + + +++ ++
Sbjct: 242 QLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSN 301
Query: 90 LEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSG 149
+ + ++ L+ S N L
Sbjct: 302 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTD----------------------- 338
Query: 150 ISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAF 209
+ T L L L N+L +L + + L LD+S + +
Sbjct: 339 ---TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC 395
Query: 210 VNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDI 269
L +L +S N L+ ++ ++ L L + + +P LQEL++
Sbjct: 396 SWTKSLLSLNMSSNILTD---TIFRCLPPRIKVLDLHSNKIKSIPKQVVK-LEALQELNV 451
Query: 270 SHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGN 320
+ N L+ + F ++TSL+ + L N
Sbjct: 452 ASN------------------------QLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 108 bits (271), Expect = 6e-25
Identities = 40/246 (16%), Positives = 85/246 (34%), Gaps = 32/246 (13%)
Query: 30 QPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTS 89
+ + + ++L + + + +N + + + R++ ++
Sbjct: 266 RDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISP 325
Query: 90 LEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSG 149
+L + LT +L L+TL L N+LK + + L LD+ Q+
Sbjct: 326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS 385
Query: 150 I-SNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDA 208
+ + + L +LN++ N L D L
Sbjct: 386 VSYDEKKGDCSWTKSLLSLNMSSNILTDT-----------IFRCLP-------------- 420
Query: 209 FVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELD 268
+++ L L N + + + + L L L++ + L +P F R T LQ++
Sbjct: 421 ----PRIKVLDLHSNKIKS--IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIW 474
Query: 269 ISHNPL 274
+ NP
Sbjct: 475 LHTNPW 480
Score = 63.7 bits (155), Expect = 1e-10
Identities = 44/201 (21%), Positives = 63/201 (31%), Gaps = 46/201 (22%)
Query: 317 LSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVL 376
S N L + L Q T +L ++ ++ L + L L +S N + L
Sbjct: 7 RSKNGLIHVPKDLSQKTT---ILNISQNYISELWTSDILS---LSKLRILIISHNRIQYL 60
Query: 377 PDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGN 436
S F F +LE L LS N L +
Sbjct: 61 DISV---------------FKFNQ-----------------ELEYLDLSHNKLVKISCHP 88
Query: 437 LLPPQLSRLRSLDLSRCKIDYLPPN-VFNNTRNITSLNLANNNLSMTSELSFQFLDVLLE 495
L+ LDLS D LP F N + L L+ +L +S L L++
Sbjct: 89 -----TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKV 143
Query: 496 LESLDLSNNNLTHISPTVLRH 516
L L L P L+
Sbjct: 144 L--LVLGETYGEKEDPEGLQD 162
Score = 37.2 bits (86), Expect = 0.018
Identities = 18/82 (21%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 447 SLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNL 506
+D S+ + ++P ++ T T LN++ N +S L +L L +S+N +
Sbjct: 4 LVDRSKNGLIHVPKDLSQKT---TILNISQNYISELWTSDILSLS---KLRILIISHNRI 57
Query: 507 THISPTVLRHNRAITSIKLVGN 528
++ +V + N+ + + L N
Sbjct: 58 QYLDISVFKFNQELEYLDLSHN 79
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 173 bits (441), Expect = 2e-47
Identities = 64/453 (14%), Positives = 128/453 (28%), Gaps = 55/453 (12%)
Query: 60 FTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLEL 119
N ++ + L+ + +++ L L+ L+ IS + L+ L L
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65
Query: 120 SQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDV 179
S N L +D L +L L TLDL + + L + L+ A N + +
Sbjct: 66 SSNVLYETLD----LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSC 116
Query: 180 ATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTK 239
+ ++ L+N + L + ++++ L L N + + +
Sbjct: 117 SR-----GQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170
Query: 240 LHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQ 299
L L+L+ + + F L+ LD+S N + + + + + L
Sbjct: 171 LEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKLV 227
Query: 300 RISRSTFLKMTSLKTLILSGNKLETL-ESGLFQNLTHLSVLELNNCGLTRLNETVFHENY 358
I ++ +L+ L GN F + + + +
Sbjct: 228 LIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT-----VKKLTGQNEE 281
Query: 359 TYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPD 418
LP D L+ L
Sbjct: 282 ECTVPTLGHYGAYCCEDLPAPF---------------ADRLIALKRKE------------ 314
Query: 419 LEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNN 478
L G+ L +R R +D + + + V + +L
Sbjct: 315 HALLSGQGSETERLECERE---NQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKA 371
Query: 479 LSMTSELSFQFLDVLLELESLDLSNNNLTHISP 511
L + L + L H +
Sbjct: 372 LDEQVSNGRRAHAELDGTLQQAVGQIELQHATE 404
Score = 156 bits (397), Expect = 2e-41
Identities = 76/500 (15%), Positives = 156/500 (31%), Gaps = 41/500 (8%)
Query: 14 LDNPGLITINLNANPIQPV-EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLS 72
+ + + ++ A ++ L + LS+I+ T L L+LS
Sbjct: 7 QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66
Query: 73 GNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTL 132
N L + L++L L LN + + ++TL + N + +
Sbjct: 67 SNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISR-----V 114
Query: 133 VLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDS 192
+ L + I+ L D + ++ L+L NE+ ++ A + L+
Sbjct: 115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA-SSDTLEH 173
Query: 193 LDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSR 252
L+L + + KL+TL LS N L+ + + + +SLRN L
Sbjct: 174 LNLQYNFIYD-VKGQVVF--AKLKTLDLSSNKLA--FMGPEFQSAAGVTWISLRNNKLVL 228
Query: 253 LPANTFHRFTCLQELDISHNPL-IDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTS 311
+ L+ D+ N S + ++ + +++++ + T
Sbjct: 229 IE-KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK--QTVKKLTGQNEEECTV 285
Query: 312 LKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTR-LNETVFHENYTYPDLEELRLSG 370
E L + L L E E + E E+
Sbjct: 286 PTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALK 345
Query: 371 NPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLH 430
RT+ Q+ + L + + + + L G
Sbjct: 346 EQY------------RTVIDQVTLRKQAKITLEQKKKALDEQV-SNGRRAHAELDGTLQQ 392
Query: 431 VLPTGNL--LPPQLSRLRSLDLSRCKIDYLP-PNVFNNTRNITSLNLANNNLSMTSELSF 487
+ L + S L+ L + + + I ++ + + +E +
Sbjct: 393 AVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENA 452
Query: 488 QFLDVLLELESLDLSNNNLT 507
+ L L L L++ N T
Sbjct: 453 R-LKKLNGEADLALASANAT 471
Score = 148 bits (375), Expect = 2e-38
Identities = 73/423 (17%), Positives = 140/423 (33%), Gaps = 60/423 (14%)
Query: 108 FDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNL 167
N N K +++ + LK + + + + LDL + +S + A T L L
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALAS--LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63
Query: 168 NLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSA 227
NL+ N L + ++L L +LDL+N +++ + + TL+ + N +S
Sbjct: 64 NLSSNVLYETLDL----ESLSTLRTLDLNNNYVQ------ELLVGPSIETLHAANNNIS- 112
Query: 228 ADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLID-AFTALLSPLE 286
V+ + L N ++ L + +Q LD+ N + F L + +
Sbjct: 113 ---RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169
Query: 287 SLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGL 346
+LEHL++ Y+ + + LKTL LS NKL + FQ+ ++ + L N L
Sbjct: 170 TLEHLNLQYNFIYDVKGQVVF--AKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKL 226
Query: 347 TRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILN 406
+ + + +LE L GN H L F N
Sbjct: 227 VLIEKALRFS----QNLEHFDLRGNGFHCGT---------------------LRDFFSKN 261
Query: 407 ETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNT 466
++ + L N + + + LP +
Sbjct: 262 ------------QRVQTVAKQTVKKLTGQNEE--ECTVPTLGHYGAYCCEDLPAPFADRL 307
Query: 467 RNITSLNLANNNLSMTSELSFQFLDV-LLELESLDLSNNNLTHISPTVLRHNRAITSIKL 525
+ A + + + +D + V +A +++
Sbjct: 308 IALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQ 367
Query: 526 VGN 528
Sbjct: 368 KKK 370
Score = 127 bits (321), Expect = 2e-31
Identities = 59/311 (18%), Positives = 109/311 (35%), Gaps = 54/311 (17%)
Query: 207 DAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQE 266
+ N + + ++ + L A S + + L L LS++ A FT L+
Sbjct: 4 EIKQNGNRYKIEKVTDSSLKQALAS-LRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62
Query: 267 LDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLE 326
L++S N L + L L +L LD+ + +Q + S++TL + N + +
Sbjct: 63 LNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVS 115
Query: 327 SGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMR 386
Q ++ L N +T L + ++ L L N + + + S
Sbjct: 116 CSRGQGKKNIY---LANNKITMLRDLDEG---CRSRVQYLDLKLNEIDTVNFAELAASS- 168
Query: 387 TIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLR 446
LE L L N ++ + + +L+
Sbjct: 169 ------------------------------DTLEHLNLQYNFIYDVKGQVVFA----KLK 194
Query: 447 SLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNL 506
+LDLS K+ ++ P F + +T ++L NN L + + L LE DL N
Sbjct: 195 TLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKA----LRFSQNLEHFDLRGNGF 249
Query: 507 THISPTVLRHN 517
+
Sbjct: 250 HCGTLRDFFSK 260
Score = 124 bits (312), Expect = 3e-30
Identities = 54/298 (18%), Positives = 104/298 (34%), Gaps = 53/298 (17%)
Query: 237 LTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYS 296
+ + + L + A+ ++ELD+S NPL A L+P LE L++ +
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68
Query: 297 NLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHE 356
L +++L+TL L+ N ++ L + L N ++R++ +
Sbjct: 69 VLYETL--DLESLSTLRTLDLNNNYVQEL-----LVGPSIETLHAANNNISRVSCSRG-- 119
Query: 357 NYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTY 416
+ + L+ N + +L D
Sbjct: 120 ----QGKKNIYLANNKITMLRDLD---------------EGCR----------------- 143
Query: 417 PDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLAN 476
++ L L N + + L L L+L I + V + +L+L++
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAA-SSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSS 200
Query: 477 NNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDC 534
N L+ + +F + + L NN L I LR ++ + L GN + C
Sbjct: 201 NKLA---FMGPEFQS-AAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGNGFHCGT 253
Score = 94.5 bits (235), Expect = 1e-20
Identities = 39/235 (16%), Positives = 75/235 (31%), Gaps = 45/235 (19%)
Query: 303 RSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPD 362
K ++ + L+ + L Q+ ++ L+L+ L++++
Sbjct: 3 HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPF---TK 59
Query: 363 LEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENY-----TYP 417
LE L LS N L+ D + L L L+ + NY P
Sbjct: 60 LELLNLSSNVLYETLD-----------------LESLSTLRTLD---LNNNYVQELLVGP 99
Query: 418 DLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANN 477
+E L + N + + +++ L+ KI L + L+L N
Sbjct: 100 SIETLHAANNNISRVSCSR-----GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154
Query: 478 NLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTV---------LRHNRAITSI 523
+ + LE L+L N + + V L N+ + +
Sbjct: 155 EIDTVNFAE--LAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNK-LAFM 206
Score = 55.2 bits (133), Expect = 5e-08
Identities = 15/166 (9%), Positives = 38/166 (22%), Gaps = 2/166 (1%)
Query: 5 HPVYNDRRNLDNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLT 64
P + L ++ + + +E + + + Q
Sbjct: 301 APFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQ 360
Query: 65 TLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKL 124
L+ L L+ + + A + + L+ L +
Sbjct: 361 AKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQ-HATEEQSPLQLLRAIVKRY 419
Query: 125 KSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLA 170
+ + D+ Q + L + +LA
Sbjct: 420 -EEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLA 464
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 167 bits (425), Expect = 1e-46
Identities = 65/311 (20%), Positives = 121/311 (38%), Gaps = 23/311 (7%)
Query: 41 SLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNL 100
L + + L + + + T L DL N + + F L L L+L +
Sbjct: 34 HLRVVQCSDLGLKAVPKEISPDTTLL---DLQNNDISELRKDDFKGLQHLYALVLVNNKI 90
Query: 101 TYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFAN 160
+ I AF L L+ L +S+N L + L L + + I +P VF+
Sbjct: 91 SKIHEKAFSPLRKLQKLYISKNHLVE-----IPPNLPSSLVELRIHDNRIRKVPKGVFSG 145
Query: 161 NTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYL 220
+ + + N L + L L+ L +S L G + +D L L+L
Sbjct: 146 LRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP---ETLNELHL 200
Query: 221 SGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTA 280
N + A +L L +KL+RL L + + + + L+EL + +N L A
Sbjct: 201 DHNKIQAIELE-DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL-SRVPA 258
Query: 281 LLSPLESLEHLDMGYSNLQRISRSTF------LKMTSLKTLILSGNKLE--TLESGLFQN 332
L L+ L+ + + +N+ ++ + F +K + L N + ++ F+
Sbjct: 259 GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRC 318
Query: 333 LTHLSVLELNN 343
+T ++ N
Sbjct: 319 VTDRLAIQFGN 329
Score = 149 bits (379), Expect = 3e-40
Identities = 59/312 (18%), Positives = 118/312 (37%), Gaps = 41/312 (13%)
Query: 17 PGLITINLNANPIQPV-EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP 75
P ++L N I + + F + L L + +SKI+ + F+ L L KL +S N
Sbjct: 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113
Query: 76 LRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLG 135
L I P + +SL L ++ + + F L ++ +E+ N L++
Sbjct: 114 LVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170
Query: 136 NLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDL 195
L KL+ L + ++ ++ +P ++ L L+L N++ +++ L L L
Sbjct: 171 GL-KLNYLRISEAKLTGIPKDLPET---LNELHLDHNKIQAIELEDL--LRYSKLYRLGL 224
Query: 196 SNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPA 255
+ ++ + + LR L+L N LS + L L L + L ++++
Sbjct: 225 GHNQIRM-IENGSLSFLPTLRELHLDNNKLSR--VPAGLPDLKLLQVVYLHTNNITKVGV 281
Query: 256 NTFH------RFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKM 309
N F + + + +NP+ + +TF +
Sbjct: 282 NDFCPVGFGVKRAYYNGISLFNNPV----------------------PYWEVQPATFRCV 319
Query: 310 TSLKTLILSGNK 321
T + K
Sbjct: 320 TDRLAIQFGNYK 331
Score = 136 bits (345), Expect = 1e-35
Identities = 69/321 (21%), Positives = 107/321 (33%), Gaps = 56/321 (17%)
Query: 192 SLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLS 251
LDL N + L +D F L L L N +S A PL KL +L + L
Sbjct: 58 LLDLQNNDISE-LRKDDFKGLQHLYALVLVNNKISKIH-EKAFSPLRKLQKLYISKNHLV 115
Query: 252 RLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQR--ISRSTFLKM 309
+P N L EL I N + + S L ++ ++MG + L+ F +
Sbjct: 116 EIPPNLPSS---LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL 172
Query: 310 TSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLS 369
L L +S KL + L + L L L++ + + Y L L L
Sbjct: 173 -KLNYLRISEAKLTGIPKDLPETLNELH---LDHNKIQAIELEDLLR---YSKLYRLGLG 225
Query: 370 GNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPL 429
N + ++ + + FL P L EL L N L
Sbjct: 226 HNQIRMIENGS---------------LSFL-----------------PTLRELHLDNNKL 253
Query: 430 HVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTR------NITSLNLANNNLSMTS 483
+P G P L L+ + L I + N F ++L NN +
Sbjct: 254 SRVPAGL---PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE 310
Query: 484 ELSFQFLDVLLELESLDLSNN 504
F + + ++ N
Sbjct: 311 VQPATFRC-VTDRLAIQFGNY 330
Score = 120 bits (304), Expect = 3e-30
Identities = 55/290 (18%), Positives = 95/290 (32%), Gaps = 49/290 (16%)
Query: 240 LHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQ 299
L + + GL +P LD+ +N + + L+ L L + + +
Sbjct: 35 LRVVQCSDLGLKAVPKEISPD---TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91
Query: 300 RISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYT 359
+I F + L+ L +S N L + L +L L +++ + ++ + VF
Sbjct: 92 KIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELR---IHDNRIRKVPKGVFSGL-- 146
Query: 360 YPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDL 419
++ + + GNPL + L L
Sbjct: 147 -RNMNCIEMGGNPLENSG----------FEPGAFDG---------LK------------L 174
Query: 420 EELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNL 479
LR+S L +P L L L KI + + L L +N +
Sbjct: 175 NYLRISEAKLTGIPKDLP-----ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI 229
Query: 480 SMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNP 529
M S FL L L L NN L+ + P L + + + L N
Sbjct: 230 RMIENGSLSFLP---TLRELHLDNNKLSRV-PAGLPDLKLLQVVYLHTNN 275
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 173 bits (440), Expect = 3e-46
Identities = 84/557 (15%), Positives = 162/557 (29%), Gaps = 85/557 (15%)
Query: 19 LITINLNANPIQPVEGAFLVA-----RSLLYLYMQECTLSKINPQFFTNLTTLN--KLDL 71
L + L ++ + E F S K + + K +
Sbjct: 107 LEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCI 166
Query: 72 SGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHID-- 129
+ +P + + N+T++ A L L+ + + +
Sbjct: 167 NSDPQQKSIKKSSRITLKDTQIGQLSNNITFV-SKAVMRLTKLRQFYMGNSPFVAENICE 225
Query: 130 --WTLVLGNLGKLDTLDLRQSGISNLPDNVFANN-------------TWLRNLNLAENEL 174
+ T DL+ + +L D N ++ +N+A N
Sbjct: 226 AWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG 285
Query: 175 IDLDVATTLGQNLV------HLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAA 228
I + Q L + + + +LK E + KL L N L
Sbjct: 286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE-- 343
Query: 229 DLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLID-AFTALLSPLES 287
A KL L+L ++ +PAN ++ L +HN L +
Sbjct: 344 GKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSV 403
Query: 288 LEHLDMGYSNLQRISRSTF-------LKMTSLKTLILSGNKLETLESGLFQNLTHLSVLE 340
+ +D Y+ + + F K ++ ++ LS N++ LF + LS +
Sbjct: 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSIN 463
Query: 341 LNNCGLTRLNETVFHENYTY----PDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNF 396
L LT + + + L + L N L L D + ++
Sbjct: 464 LMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTL----------- 512
Query: 397 DFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRL---RSLDLSRC 453
P L + LS N PT L L D
Sbjct: 513 --------------------PYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGN 552
Query: 454 KIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTV 513
+ P ++T L + +N++ +++ + + LD+ +N I +
Sbjct: 553 RTLREWPEGITLCPSLTQLQIGSNDI---RKVNEKITP---NISVLDIKDNPNISIDLSY 606
Query: 514 LRHNRAITSIKLVGNPW 530
+ L +
Sbjct: 607 VCPYIEAGMYMLFYDKT 623
Score = 165 bits (421), Expect = 1e-43
Identities = 82/504 (16%), Positives = 163/504 (32%), Gaps = 83/504 (16%)
Query: 48 QECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGV-FDPLTSLEYLMLNRCNLTYISPS 106
+ + Q N +LD+ G +PGV + + L L + P
Sbjct: 45 KNWSQQGFGTQPGANWNFNKELDMWGA-----QPGVSLNSNGRVTGLSLEGFGASGRVPD 99
Query: 107 AFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRN 166
A L L+ L L + + + + + +Q + +
Sbjct: 100 AIGQLTELEVLALGSHGE-KVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDF 158
Query: 167 LNLAENELIDLDVATTL---GQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGN 223
+L ++ + ++ + + + + ++ + TKLR Y+ +
Sbjct: 159 SDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKA--VMRLTKLRQFYMGNS 216
Query: 224 PLSAADLSVALKP------------------LTKLHRLSLRNCGLSRLPANTFHRFTCLQ 265
P A ++ A + L L + + NC +Q
Sbjct: 217 PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276
Query: 266 ELDISHNPLIDAFT--------ALLSPLESLEHLDMGYSNLQRISR-STFLKMTSLKTLI 316
++++ N I A E ++ + +GY+NL+ ++ KM L L
Sbjct: 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLE 336
Query: 317 LSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVL 376
N+LE F + L+ L L +T + +E L + N L +
Sbjct: 337 CLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGFT---EQVENLSFAHNKLKYI 392
Query: 377 PDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGN 436
P+ S+ + + S N + + N
Sbjct: 393 PNIFDAKSVSV-------------------------------MSAIDFSYNEIGSVDGKN 421
Query: 437 L--LPP---QLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLD 491
L P + + S++LS +I P +F+ ++S+NL N L+ + S + +
Sbjct: 422 FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN 481
Query: 492 VLLE----LESLDLSNNNLTHISP 511
+ L S+DL N LT +S
Sbjct: 482 ENFKNTYLLTSIDLRFNKLTKLSD 505
Score = 162 bits (411), Expect = 2e-42
Identities = 74/530 (13%), Positives = 156/530 (29%), Gaps = 77/530 (14%)
Query: 41 SLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIE----PGVFDPLTSLEYLMLN 96
+ L ++ S P LT L L L + ++ E P S E
Sbjct: 82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141
Query: 97 RCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDN 156
R + + ++ N K + + I+ +
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKA 201
Query: 157 VFANNTWLRNLNLAENELIDLDVATTLGQ-----------------NLVHLDSLDLSNCH 199
V T LR + + + ++ NL L +++ NC
Sbjct: 202 VM-RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP 260
Query: 200 LKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVA-------LKPLTKLHRLSLRNCGLSR 252
L +++ + ++ N + + K+ + + L
Sbjct: 261 NLTKLPT-FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT 319
Query: 253 LPA-NTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTS 311
P + + L L+ +N L A L L++ Y+ + I +
Sbjct: 320 FPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGFTEQ 378
Query: 312 LKTLILSGNKLETLESGLF-QNLTHLSVLELNNCGLTRLNETVFH----ENYTYPDLEEL 366
++ L + NKL+ + + ++++ +S ++ + + ++ F + ++ +
Sbjct: 379 VENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI 438
Query: 367 RLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSG 426
LS N + P F L + L G
Sbjct: 439 NLSNNQISKFPKEL---------------FSTG-----------------SPLSSINLMG 466
Query: 427 NPLHVLPTGNLLPP-----QLSRLRSLDLSRCKIDYLPPNV-FNNTRNITSLNLANNNLS 480
N L +P +L L S+DL K+ L + + ++L+ N+ S
Sbjct: 467 NMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFS 526
Query: 481 M--TSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGN 528
T L+ L D N P + ++T +++ N
Sbjct: 527 KFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN 576
Score = 134 bits (340), Expect = 3e-33
Identities = 58/333 (17%), Positives = 111/333 (33%), Gaps = 23/333 (6%)
Query: 19 LITINLNANPIQ--PVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPL 76
+ I + N ++ PVE + + L L L P F + L L+L+ N +
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAF-GSEIKLASLNLAYNQI 365
Query: 77 RIIEPGVFDPLTSLEYLMLNRCNLTYISPSAF-DNLNHLKTLELSQNKLKSHIDWTLV-- 133
I +E L L YI +++ + ++ S N++ S
Sbjct: 366 TEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425
Query: 134 ---LGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQ----- 185
+ +++L + IS P +F+ + L ++NL N L ++ + +
Sbjct: 426 DPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFK 485
Query: 186 NLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGN-----PLSAADLSVALKPLTKL 240
N L S+DL L + L + LS N P + S LK
Sbjct: 486 NTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSS-TLKGFGIR 544
Query: 241 HRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQR 300
++ + R L +L I N + + ++ LD+ +
Sbjct: 545 NQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITP---NISVLDIKDNPNIS 601
Query: 301 ISRSTFLKMTSLKTLILSGNKLETLESGLFQNL 333
I S +L +K + + ++
Sbjct: 602 IDLSYVCPYIEAGMYMLFYDKTQDIRGCDALDI 634
Score = 114 bits (287), Expect = 1e-26
Identities = 40/355 (11%), Positives = 97/355 (27%), Gaps = 58/355 (16%)
Query: 186 NLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSL 245
+ + L L G + DA T+L L L + + K ++
Sbjct: 79 SNGRVTGLSLEGFGASGRVP-DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ 137
Query: 246 RNCGLSRLPANTFH-----RFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQR 300
+ F+ L + I+ +P + + +N+
Sbjct: 138 KQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF 197
Query: 301 ISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTY 360
+S +++T L+ + + + + + +
Sbjct: 198 VS-KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDN--------L 248
Query: 361 PDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLE 420
DL ++ + P + +PT + L P+++
Sbjct: 249 KDLTDVEVYNCPN-----------LTKLPTFLKA----------L-----------PEMQ 276
Query: 421 ELRLSGNPLHVLPTGNLLP------PQLSRLRSLDLSRCKIDYLP-PNVFNNTRNITSLN 473
+ ++ N P +++ + + + P + + L
Sbjct: 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLE 336
Query: 474 LANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGN 528
N L +F ++L SL+L+ N +T I + ++ N
Sbjct: 337 CLYNQLEGKLP-AFGSE---IKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN 387
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 168 bits (427), Expect = 8e-46
Identities = 67/308 (21%), Positives = 116/308 (37%), Gaps = 46/308 (14%)
Query: 239 KLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNL 298
+ ++ GLS +P + L++ N + L LE L +G +++
Sbjct: 55 QFSKVVCTRRGLSEVPQGIPSN---TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111
Query: 299 QRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENY 358
++I F + SL TL L N L + SG F+ L+ L L L N + + F+
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRV- 170
Query: 359 TYPDLEELRLSG-NPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYP 417
P L L L L + + F+ L
Sbjct: 171 --PSLMRLDLGELKKLEYISEGA---------------FEGL-----------------F 196
Query: 418 DLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANN 477
+L+ L L + +P L L L++S + P F+ ++ L + N+
Sbjct: 197 NLKYLNLGMCNIKDMPNLT----PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS 252
Query: 478 NLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIA 537
+S+ +F L L L+L++NNL+ + + R + + L NPW CDC+I
Sbjct: 253 QVSLIERNAFDGLA---SLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDIL 309
Query: 538 DMWEWATR 545
+ W
Sbjct: 310 WLAWWLRE 317
Score = 158 bits (401), Expect = 3e-42
Identities = 63/259 (24%), Positives = 103/259 (39%), Gaps = 32/259 (12%)
Query: 17 PGLITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP 75
+NL N IQ ++ F L L + ++ +I F L +LN L+L N
Sbjct: 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134
Query: 76 LRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLG 135
L +I G F+ L+ L L L + I AF+ + L L+L + K
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKK----------- 183
Query: 136 NLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDL 195
+ + + F L+ LNL + D+ LV L+ L++
Sbjct: 184 --------------LEYISEGAFEGLFNLKYLNLGMCNIKDMPN----LTPLVGLEELEM 225
Query: 196 SNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPA 255
S H + +F + L+ L++ + +S + + A L L L+L + LS LP
Sbjct: 226 SGNHFPE-IRPGSFHGLSSLKKLWVMNSQVSLIERN-AFDGLASLVELNLAHNNLSSLPH 283
Query: 256 NTFHRFTCLQELDISHNPL 274
+ F L EL + HNP
Sbjct: 284 DLFTPLRYLVELHLHHNPW 302
Score = 151 bits (384), Expect = 5e-40
Identities = 72/294 (24%), Positives = 117/294 (39%), Gaps = 45/294 (15%)
Query: 138 GKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSN 197
+ + + G+S +P + +N R LNL EN + + T ++L HL+ L L
Sbjct: 54 NQFSKVVCTRRGLSEVPQGIPSN---TRYLNLMENNIQMIQADTF--RHLHHLEVLQLGR 108
Query: 198 CHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANT 257
++ + AF L TL L N L+ S A + L+KL L LRN + +P+
Sbjct: 109 NSIRQ-IEVGAFNGLASLNTLELFDNWLTVIP-SGAFEYLSKLRELWLRNNPIESIPSYA 166
Query: 258 FHRFTCLQELDISHNPLIDAFTA-LLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLI 316
F+R L LD+ ++ + L +L++L++G N++ + + L+ L
Sbjct: 167 FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELE 224
Query: 317 LSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVL 376
+SGN + G F L+ L L + N ++ + F L EL L+ N L L
Sbjct: 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL---ASLVELNLAHNNLSSL 281
Query: 377 PDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLH 430
P F L L EL L NP +
Sbjct: 282 PHDL---------------FTPL-----------------RYLVELHLHHNPWN 303
Score = 50.9 bits (122), Expect = 1e-06
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Query: 443 SRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLS 502
++ + +R + +P + +NT LNL NN+ M +F+ L LE L L
Sbjct: 54 NQFSKVVCTRRGLSEVPQGIPSNT---RYLNLMENNIQMIQADTFRHLH---HLEVLQLG 107
Query: 503 NNNLTHISPTVLRHNRAITSIKLVGN 528
N++ I ++ +++L N
Sbjct: 108 RNSIRQIEVGAFNGLASLNTLELFDN 133
Score = 42.0 bits (99), Expect = 5e-04
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 17 PGLITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP 75
L + + + + +E AF SL+ L + LS + FT L L +L L NP
Sbjct: 242 SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301
Query: 76 LR 77
Sbjct: 302 WN 303
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 165 bits (419), Expect = 1e-45
Identities = 56/311 (18%), Positives = 104/311 (33%), Gaps = 48/311 (15%)
Query: 64 TTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNK 123
+ LDLS N + I +L+ L+L + I +F +L L+ L+LS N
Sbjct: 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111
Query: 124 LKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTL 183
L + L + F + L LNL N L +
Sbjct: 112 LSN--------------------------LSSSWFKPLSSLTFLNLLGNPYKTLGETSLF 145
Query: 184 GQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRL 243
+L L L + N + F T L L + + L + + +LK + + L
Sbjct: 146 -SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK-SLKSIQNVSHL 203
Query: 244 SLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISR 303
L L + ++ L++ L +S L
Sbjct: 204 ILHMKQHILLLEIFVDVTSSVECLELRDTDLD----------------TFHFSELSTGET 247
Query: 304 STFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDL 363
++ +K + + + ++ L + L ++ L LE + L + + +F L
Sbjct: 248 NSLIKKFTFRNVKITDESLFQVM-KLLNQISGLLELEFSRNQLKSVPDGIFD---RLTSL 303
Query: 364 EELRLSGNPLH 374
+++ L NP
Sbjct: 304 QKIWLHTNPWD 314
Score = 148 bits (376), Expect = 9e-40
Identities = 53/267 (19%), Positives = 100/267 (37%), Gaps = 14/267 (5%)
Query: 17 PGLITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP 75
+ +++L+ N I + +L L + ++ I F++L +L LDLS N
Sbjct: 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111
Query: 76 LRIIEPGVFDPLTSLEYLMLNRCNLTYISP-SAFDNLNHLKTLELSQNKLKSHIDWTLVL 134
L + F PL+SL +L L + S F +L L+ L + + I
Sbjct: 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ-RKDF 170
Query: 135 GNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLD 194
L L+ L++ S + + + + +L L + I L ++ L+
Sbjct: 171 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILL--LEIFVDVTSSVECLE 228
Query: 195 LSNCHLKG-------PLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRN 247
L + L ++ + R + ++ L + L ++ L L
Sbjct: 229 LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ--VMKLLNQISGLLELEFSR 286
Query: 248 CGLSRLPANTFHRFTCLQELDISHNPL 274
L +P F R T LQ++ + NP
Sbjct: 287 NQLKSVPDGIFDRLTSLQKIWLHTNPW 313
Score = 141 bits (357), Expect = 4e-37
Identities = 70/312 (22%), Positives = 112/312 (35%), Gaps = 44/312 (14%)
Query: 238 TKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSN 297
+ L L N ++ + + R LQ L ++ N + S L SLEHLD+ Y+
Sbjct: 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111
Query: 298 LQRISRSTFLKMTSLKTLILSGNKLETL-ESGLFQNLTHLSVLEL-NNCGLTRLNETVFH 355
L +S S F ++SL L L GN +TL E+ LF +LT L +L + N T++ F
Sbjct: 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171
Query: 356 ENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYT 415
LEEL + + L + +
Sbjct: 172 GL---TFLEELEIDASDLQSYEPKS---------------LKSI---------------- 197
Query: 416 YPDLEELRLSGNPLHVLPTG---NLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSL 472
++ L L +L + LR DL L N+ +
Sbjct: 198 -QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTF 256
Query: 473 -NLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWK 531
N+ + S+ + L+ + L L+ S N L + + ++ I L NPW
Sbjct: 257 RNVKITDESLFQVMKL--LNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314
Query: 532 CDCN-IADMWEW 542
C C I + W
Sbjct: 315 CSCPRIDYLSRW 326
Score = 44.7 bits (106), Expect = 7e-05
Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 24/113 (21%)
Query: 441 QLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLEL---- 496
R S ++ +P + SL+L+NN ++ S Q L L
Sbjct: 29 SCDRNGICKGSSGSLNSIPSGLTEAV---KSLDLSNNRITYISNSDLQRCVNLQALVLTS 85
Query: 497 -----------------ESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKC 532
E LDLS N L+++S + + ++T + L+GNP+K
Sbjct: 86 NGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT 138
Score = 43.6 bits (103), Expect = 2e-04
Identities = 13/61 (21%), Positives = 19/61 (31%)
Query: 17 PGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPL 76
+ + + V LL L L + F LT+L K+ L NP
Sbjct: 254 FTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313
Query: 77 R 77
Sbjct: 314 D 314
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 164 bits (417), Expect = 2e-45
Identities = 61/312 (19%), Positives = 122/312 (39%), Gaps = 43/312 (13%)
Query: 40 RSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCN 99
L +Q +++I F NL L+ L L N + I PG F PL LE L L++
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 100 LTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFA 159
L + L+ L + +N+ I+ + +VF
Sbjct: 112 LKELPEKMPKT---LQELRVHENE--------------------------ITKVRKSVFN 142
Query: 160 NNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLY 219
+ + L N L + Q + L + +++ ++ + + + L L+
Sbjct: 143 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLPPS---LTELH 198
Query: 220 LSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFT 279
L GN ++ D + +LK L L +L L +S + + L+EL +++N L
Sbjct: 199 LDGNKITKVD-AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVP 256
Query: 280 ALLSPLESLEHLDMGYSNLQRISRSTFL------KMTSLKTLILSGNKLET--LESGLFQ 331
L+ + ++ + + +N+ I + F K S + L N ++ ++ F+
Sbjct: 257 GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 316
Query: 332 NLTHLSVLELNN 343
+ + ++L N
Sbjct: 317 CVYVRAAVQLGN 328
Score = 158 bits (401), Expect = 2e-43
Identities = 69/312 (22%), Positives = 123/312 (39%), Gaps = 40/312 (12%)
Query: 17 PGLITINLNANPIQPV-EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP 75
P ++L N I + +G F ++L L + +SKI+P F L L +L LS N
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 76 LRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLG 135
L+ + + +L+ L ++ +T + S F+ LN + +EL N LKS
Sbjct: 112 LKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168
Query: 136 NLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDL 195
+ KL + + + I+ +P + + L L+L N++ +D A+ + L +L L L
Sbjct: 169 GMKKLSYIRIADTNITTIPQGLPPS---LTELHLDGNKITKVDAASL--KGLNNLAKLGL 223
Query: 196 SNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPA 255
S + + + N LR L+L+ N L + L + + L N +S + +
Sbjct: 224 SFNSISA-VDNGSLANTPHLRELHLNNNKLVK--VPGGLADHKYIQVVYLHNNNISAIGS 280
Query: 256 NTFH------RFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKM 309
N F + + + NP+ I STF +
Sbjct: 281 NDFCPPGYNTKKASYSGVSLFSNPV----------------------QYWEIQPSTFRCV 318
Query: 310 TSLKTLILSGNK 321
+ L K
Sbjct: 319 YVRAAVQLGNYK 330
Score = 157 bits (399), Expect = 4e-43
Identities = 71/438 (16%), Positives = 135/438 (30%), Gaps = 141/438 (32%)
Query: 41 SLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNL 100
L + + L K+ + L DL N + I+ G F L +L L+L +
Sbjct: 32 HLRVVQCSDLGLEKVPKDLPPDTALL---DLQNNKITEIKDGDFKNLKNLHTLILINNKI 88
Query: 101 TYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFAN 160
+ ISP AF L L+ L LS+N+LK LP+ +
Sbjct: 89 SKISPGAFAPLVKLERLYLSKNQLKE--------------------------LPEKMPKT 122
Query: 161 NTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYL 220
L+ L + ENE+ + + F ++ + L
Sbjct: 123 ---LQELRVHENEITKV---------------------------RKSVFNGLNQMIVVEL 152
Query: 221 SGNPLSAADLSV-ALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFT 279
NPL ++ + A + + KL + + + ++ +P L EL + N
Sbjct: 153 GTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS---LTELHLDGN------- 202
Query: 280 ALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVL 339
+ ++ ++ + +L L LS N + +++G N HL L
Sbjct: 203 -----------------KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL 245
Query: 340 ELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFL 399
LNN L ++ + + ++ + L N + + + F
Sbjct: 246 HLNNNKLVKVPGGLAD----HKYIQVVYLHNNNISAIGSND-----------------FC 284
Query: 400 VILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLP 459
+ + L NP+ + +
Sbjct: 285 PPGYNTK---------KASYSGVSLFSNPV------------------------QYWEIQ 311
Query: 460 PNVFNNTRNITSLNLANN 477
P+ F ++ L N
Sbjct: 312 PSTFRCVYVRAAVQLGNY 329
Score = 146 bits (370), Expect = 4e-39
Identities = 62/367 (16%), Positives = 130/367 (35%), Gaps = 72/367 (19%)
Query: 140 LDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCH 199
L + G+ +P ++ + L+L N++ ++ +NL +L +L L N
Sbjct: 33 LRVVQCSDLGLEKVPKDLPPD---TALLDLQNNKITEIKDGDF--KNLKNLHTLILINNK 87
Query: 200 LKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFH 259
+ +S AF KL LYLS N L + K L L + ++++ + F+
Sbjct: 88 ISK-ISPGAFAPLVKLERLYLSKNQLK----ELPEKMPKTLQELRVHENEITKVRKSVFN 142
Query: 260 RFTCLQELDISHNPLIDAF--TALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLIL 317
+ +++ NPL + ++ L ++ + +N+ I + SL L L
Sbjct: 143 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHL 199
Query: 318 SGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLP 377
GNK+ +++ + L +L+ L L+ ++ ++ P L EL L+ N L +P
Sbjct: 200 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL---ANTPHLRELHLNNNKLVKVP 256
Query: 378 DSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNL 437
L ++ + L N + + +
Sbjct: 257 GG----------------------LADH-----------KYIQVVYLHNNNISAIGSN-- 281
Query: 438 LPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELE 497
D+ PP + + ++L +N + + +
Sbjct: 282 ------------------DFCPPGYNTKKASYSGVSLFSNPVQYWE-IQPSTFRCVYVRA 322
Query: 498 SLDLSNN 504
++ L N
Sbjct: 323 AVQLGNY 329
Score = 143 bits (363), Expect = 4e-38
Identities = 74/344 (21%), Positives = 123/344 (35%), Gaps = 77/344 (22%)
Query: 192 SLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLS 251
LDL N + + + F N L TL L N +S A PL KL RL L L
Sbjct: 56 LLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKIS-PGAFAPLVKLERLYLSKNQLK 113
Query: 252 RLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTS 311
LP LQEL + N + ++ +S F +
Sbjct: 114 ELPEKMP---KTLQELRVHEN------------------------EITKVRKSVFNGLNQ 146
Query: 312 LKTLILSGNKLET--LESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLS 369
+ + L N L++ +E+G FQ + LS + + + +T + + + P L EL L
Sbjct: 147 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP------PSLTELHLD 200
Query: 370 GNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPL 429
GN + + ++ L +L +L LS N +
Sbjct: 201 GNKITKVDAAS---------------LKGL-----------------NNLAKLGLSFNSI 228
Query: 430 HVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSF-- 487
+ G+L LR L L+ K+ +P + + I + L NNN+S F
Sbjct: 229 SAVDNGSLA--NTPHLRELHLNNNKLVKVPGG-LADHKYIQVVYLHNNNISAIGSNDFCP 285
Query: 488 -QFLDVLLELESLDLSNNNLTH--ISPTVLRHNRAITSIKLVGN 528
+ + L +N + + I P+ R +++L
Sbjct: 286 PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
Score = 126 bits (319), Expect = 3e-32
Identities = 56/290 (19%), Positives = 103/290 (35%), Gaps = 48/290 (16%)
Query: 240 LHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQ 299
L + + GL ++P + LD+ +N + + L++L L + + +
Sbjct: 33 LRVVQCSDLGLEKVPKDLPPD---TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89
Query: 300 RISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYT 359
+IS F + L+ L LS N+L+ L + + L L ++ +T++ ++VF+
Sbjct: 90 KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELR---VHENEITKVRKSVFNGL-- 144
Query: 360 YPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDL 419
+ + L NPL + F L
Sbjct: 145 -NQMIVVELGTNPLKSSG---------------------------IENGAFQGM---KKL 173
Query: 420 EELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNL 479
+R++ + +P G L L L KI + N+ L L+ N++
Sbjct: 174 SYIRIADTNITTIPQGLP-----PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 228
Query: 480 SMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNP 529
S S L L L+NN L + P L ++ I + L N
Sbjct: 229 SAVDNGSLANTP---HLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNN 274
Score = 98.9 bits (247), Expect = 9e-23
Identities = 42/248 (16%), Positives = 84/248 (33%), Gaps = 51/248 (20%)
Query: 287 SLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGL 346
L + L+++ + L L NK+ ++ G F+NL +L L L N +
Sbjct: 32 HLRVVQCSDLGLEKVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88
Query: 347 TRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILN 406
++++ F LE L LS N L LP+ +
Sbjct: 89 SKISPGAFAP---LVKLERLYLSKNQLKELPEK----------------------MP--- 120
Query: 407 ETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKI--DYLPPNVFN 464
L+ELR+ N + + L+++ ++L + + F
Sbjct: 121 ----------KTLQELRVHENEITKVRKSVF--NGLNQMIVVELGTNPLKSSGIENGAFQ 168
Query: 465 NTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIK 524
+ ++ + +A+ N++ + L L L N +T + L+ + +
Sbjct: 169 GMKKLSYIRIADTNITTIPQGLPP------SLTELHLDGNKITKVDAASLKGLNNLAKLG 222
Query: 525 LVGNPWKC 532
L N
Sbjct: 223 LSFNSISA 230
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 167 bits (424), Expect = 4e-45
Identities = 96/473 (20%), Positives = 164/473 (34%), Gaps = 61/473 (12%)
Query: 40 RSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCN 99
+ + + ++ T+L + L ++ I+ + L +L + +
Sbjct: 24 AEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQ 79
Query: 100 LTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFA 159
LT I+P NL L + ++ N++ L NL L L L + I+++
Sbjct: 80 LTDITP--LKNLTKLVDILMNNNQIADITP----LANLTNLTGLTLFNNQITDIDP--LK 131
Query: 160 NNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLY 219
N T L L L+ N + D+ L L L N N T L L
Sbjct: 132 NLTNLNRLELSSNTISDISAL----SGLTSLQQLSFGNQVTD----LKPLANLTTLERLD 183
Query: 220 LSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFT 279
+S N +S D+S L LT L L N +S + T L EL ++ N L D
Sbjct: 184 ISSNKVS--DIS-VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--I 236
Query: 280 ALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVL 339
L+ L +L LD+ + + + + +T L L L N++ + LT L+ L
Sbjct: 237 GTLASLTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQISNISP--LAGLTALTNL 292
Query: 340 ELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFL 399
ELN L ++ +N L L L N + + + L
Sbjct: 293 ELNENQLEDISPISNLKN-----LTYLTLYFNNISDISP--------------VSSLTKL 333
Query: 400 VILFILNE--TVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDY 457
LF N + ++ L N + L L+R+ L L+
Sbjct: 334 QRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLA----NLTRITQLGLNDQAWTN 389
Query: 458 LPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHIS 510
P N N ++ L + +S D++ N ++ +
Sbjct: 390 APVNYKANVSIPNTVKNVTGALIAPATISD-----GGSYTEPDITWNLPSYTN 437
Score = 163 bits (414), Expect = 7e-44
Identities = 95/455 (20%), Positives = 163/455 (35%), Gaps = 79/455 (17%)
Query: 60 FTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLEL 119
T L K L + L + L +R + I + LN+L +
Sbjct: 20 DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINF 75
Query: 120 SQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDV 179
S N+L L NL KL + + + I+++ AN T L L L N++ D+D
Sbjct: 76 SNNQLTDITP----LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDID- 128
Query: 180 ATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTK 239
L NL +L+ L+LS+ + A T L+ L L LT
Sbjct: 129 --PLK-NLTNLNRLELSSNTISDI---SALSGLTSLQQLSFGNQVTD----LKPLANLTT 178
Query: 240 LHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQ 299
L RL + + +S + + T L+ L ++N + D L L +L+ L + + L+
Sbjct: 179 LERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK 234
Query: 300 RISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYT 359
I T +T+L L L+ N++ L LT L+ L+L ++ ++
Sbjct: 235 DIG--TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTA-- 288
Query: 360 YPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDL 419
L L L+ N L + L +L
Sbjct: 289 ---LTNLELNENQLEDIS-----------------PISNL-----------------KNL 311
Query: 420 EELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNL 479
L L N + + + L++L+ L K+ + N NI L+ +N +
Sbjct: 312 TYLTLYFNNISDISPVS----SLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQI 365
Query: 480 SMTSELSFQFLDVLLELESLDLSNNNLTHISPTVL 514
S + L+ L + L L++ T+
Sbjct: 366 SDLTPLAN-----LTRITQLGLNDQAWTNAPVNYK 395
Score = 160 bits (406), Expect = 1e-42
Identities = 102/471 (21%), Positives = 168/471 (35%), Gaps = 75/471 (15%)
Query: 19 LITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRI 78
+ T+ + I+ ++G +L + L+ I P NLT L + ++ N +
Sbjct: 48 VTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD 104
Query: 79 IEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLG 138
I P LT+L L L +T I P NL +L LELS N + L L
Sbjct: 105 ITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISA----LSGLT 156
Query: 139 KLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNC 198
L L P AN T L L+++ N++ D+ L L +L+SL +N
Sbjct: 157 SLQQLSFGNQVTDLKP---LANLTTLERLDISSNKVSDIS---VLA-KLTNLESLIATNN 209
Query: 199 HLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTF 258
+ T L L L+GN L D+ L LT L L L N +S L
Sbjct: 210 QIS---DITPLGILTNLDELSLNGNQLK--DIG-TLASLTNLTDLDLANNQISNLAP--L 261
Query: 259 HRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILS 318
T L EL + N + + + L+ L +L +L++ + L+ I S + +L L L
Sbjct: 262 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLY 317
Query: 319 GNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPD 378
N + + +LT L L N ++ ++ N + L N + L
Sbjct: 318 FNNISDISP--VSSLTKLQRLFFYNNKVSDVSSLANLTN-----INWLSAGHNQISDLT- 369
Query: 379 STKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLL 438
L + +L L+ P
Sbjct: 370 ----------------PLANL-----------------TRITQLGLNDQAWTNAPVNYKA 396
Query: 439 PPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQF 489
+ + + P ++ + T ++ N S T+E+S+ F
Sbjct: 397 NVSIPNT----VKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTF 443
Score = 113 bits (285), Expect = 7e-27
Identities = 86/393 (21%), Positives = 146/393 (37%), Gaps = 76/393 (19%)
Query: 138 GKLDTLDLRQS-GISNL-PDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDL 195
G L + + Q I+ + D A L + + D T +L + +L
Sbjct: 1 GPLGSATITQDTPINQIFTDTALAE---KMKTVLGKTNVTDTVSQT----DLDQVTTLQA 53
Query: 196 SNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPA 255
+K D L + S N L+ D++ LK LTKL + + N ++ +
Sbjct: 54 DRLGIKSI---DGVEYLNNLTQINFSNNQLT--DIT-PLKNLTKLVDILMNNNQIADITP 107
Query: 256 NTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTL 315
T L L + +N + D L L +L L++ + + IS +TSL+ L
Sbjct: 108 --LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQL 161
Query: 316 ILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHV 375
+ NLT L L++++ ++ ++ N LE L + N +
Sbjct: 162 SFGNQVTDLKP---LANLTTLERLDISSNKVSDISVLAKLTN-----LESLIATNNQISD 213
Query: 376 LPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTG 435
+ L +L+EL L+GN L + T
Sbjct: 214 IT-----------------PLGIL-----------------TNLDELSLNGNQLKDIGTL 239
Query: 436 NLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLE 495
L+ L LDL+ +I L P + +T L L N +S S L+ L
Sbjct: 240 A----SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAG-----LTA 288
Query: 496 LESLDLSNNNLTHISPTVLRHNRAITSIKLVGN 528
L +L+L+ N L ISP + + + +T + L N
Sbjct: 289 LTNLELNENQLEDISP--ISNLKNLTYLTLYFN 319
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 168 bits (427), Expect = 6e-45
Identities = 94/519 (18%), Positives = 173/519 (33%), Gaps = 54/519 (10%)
Query: 64 TTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNK 123
L LS N + + L+ L L L+ + + F L+ L++S N+
Sbjct: 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111
Query: 124 LKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDN-VFANNTWLRNLNLAENELIDLDVATT 182
L++ + + L LDL + LP F N T L L L+ + LD+
Sbjct: 112 LQN-----ISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPV 166
Query: 183 LGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLH- 241
+L + LDL + H+KG +E + T + L N L + +++++ L L
Sbjct: 167 AHLHLSCI-LLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQL 225
Query: 242 ---RLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDA-FTALLSPLE--SLEHLDMGY 295
+L+ NC + R L + + H L +E+L++
Sbjct: 226 SNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN 285
Query: 296 SNLQRI-----SRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLN 350
+ + + SL + + L+ +++ L+ ++
Sbjct: 286 LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIH 345
Query: 351 ETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILN---- 406
+ L + N + L L L
Sbjct: 346 MVCPP---SPSSFTFLNFTQNVFTDSVF---------------QGCSTLKRLQTLILQRN 387
Query: 407 --ETVFHENYTYPDLEELRLSGNPLHVLPTG--NLLPPQLSRLRSLDLSRCKIDYLPPNV 462
+ F ++ L L+ L + + + L+LS L +V
Sbjct: 388 GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM---LTGSV 444
Query: 463 FNN-TRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAIT 521
F + L+L NN + + L L+ L++++N L + V ++
Sbjct: 445 FRCLPPKVKVLDLHNNRI---MSIPKDV-THLQALQELNVASNQLKSVPDGVFDRLTSLQ 500
Query: 522 SIKLVGNPWKCDCN-IADMWEWATREKGDIGVLVGSTTP 559
I L NPW C C I + EW + G + GS P
Sbjct: 501 YIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVAP 539
Score = 135 bits (342), Expect = 8e-34
Identities = 80/468 (17%), Positives = 148/468 (31%), Gaps = 53/468 (11%)
Query: 23 NLNANPIQPV-EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRII-E 80
L+ N I+ + FL + L YL + L I+ +L LDLS N ++
Sbjct: 82 RLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLR---HLDLSFNDFDVLPV 138
Query: 81 PGVFDPLTSLEYLMLNRCNLTYISPSAFDNLN-HLKTLELSQNKLKSHIDWTLVLGNLGK 139
F LT L +L L+ + +L+ L+L +K +L + N
Sbjct: 139 CKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTV 198
Query: 140 LDTLDLRQSGISNLPDNVFANNTWL--RNLNLAENELIDLDVATTLGQNLVHLDSLDLSN 197
L + S S + L N+ L + L + L ++ L +
Sbjct: 199 LHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQH 258
Query: 198 CHLKGPLSED--AFVNATKLRTLYLSGNPLSA----ADLSVALKPLTKLHRLSLRNCGLS 251
S F + L + ++ + + + L L ++N
Sbjct: 259 IETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFL 318
Query: 252 RLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTS 311
+ F + +S + S L+ + +
Sbjct: 319 FSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKR 378
Query: 312 LKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPD-LEELRLSG 370
L+TLIL N L+ + ++S LE + L LN + + + + L LS
Sbjct: 379 LQTLILQRNGLKNF-FKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSS 437
Query: 371 NPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLH 430
N L F L P ++ L L N +
Sbjct: 438 NMLTGSV------------------FRCLP----------------PKVKVLDLHNNRIM 463
Query: 431 VLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNN 478
+P L L+ L+++ ++ +P VF+ ++ + L +N
Sbjct: 464 SIPKDVT---HLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508
Score = 91.1 bits (226), Expect = 3e-19
Identities = 52/355 (14%), Positives = 111/355 (31%), Gaps = 54/355 (15%)
Query: 9 NDRRNLDNPGLITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTN----- 62
+ +L P ++L +P + +L +L + L+ N Q
Sbjct: 186 GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSEL 245
Query: 63 -----LTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYI-----SPSAFDNLN 112
L + + ++ F +EYL + +T + L
Sbjct: 246 TRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALK 305
Query: 113 HLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAEN 172
L + + + +++ L S + + + LN +N
Sbjct: 306 SLMIEHVKNQVFLFSKEA--LYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQN 363
Query: 173 ELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSV 232
D +L+TL L N L
Sbjct: 364 VFTD---------------------------SVFQGCSTLKRLQTLILQRNGLKN--FFK 394
Query: 233 ALKPLTKLHRLSLRNCGLSRLPANTFHRFTC----LQELDISHNPLIDAFTALLSPLESL 288
+ L + L+ L ++ + R + L++S N L + L P +
Sbjct: 395 VALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP--KV 452
Query: 289 EHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNN 343
+ LD+ + + I + + +L+ L ++ N+L+++ G+F LT L + L++
Sbjct: 453 KVLDLHNNRIMSIPKD-VTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHD 506
Score = 79.9 bits (197), Expect = 8e-16
Identities = 42/210 (20%), Positives = 81/210 (38%), Gaps = 12/210 (5%)
Query: 19 LITINLNANPIQ-PVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLR 77
L+ ++ E + V + + I+ + ++ L+ + N
Sbjct: 307 LMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFT 366
Query: 78 IIEPGVFDPLTSLEYLMLNRCNLTYISPSAF--DNLNHLKTLELSQNKLKSHIDWTLVLG 135
L L+ L+L R L A N++ L+TL++S N L SH
Sbjct: 367 DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC-A 425
Query: 136 NLGKLDTLDLRQSGISNLPDNVFANNTW-LRNLNLAENELIDLDVATTLGQNLVHLDSLD 194
+ L+L + L +VF ++ L+L N ++ + T +L L L+
Sbjct: 426 WAESILVLNLSS---NMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVT---HLQALQELN 479
Query: 195 LSNCHLKGPLSEDAFVNATKLRTLYLSGNP 224
+++ LK + + F T L+ ++L NP
Sbjct: 480 VASNQLKS-VPDGVFDRLTSLQYIWLHDNP 508
Score = 31.8 bits (72), Expect = 0.96
Identities = 14/59 (23%), Positives = 25/59 (42%)
Query: 17 PGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP 75
P + ++L+ N I + ++L L + L + F LT+L + L NP
Sbjct: 450 PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 161 bits (410), Expect = 8e-45
Identities = 50/236 (21%), Positives = 92/236 (38%), Gaps = 5/236 (2%)
Query: 140 LDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCH 199
L+L + + +LP VF T L L+L+ N L + L LDLS
Sbjct: 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89
Query: 200 LKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFH 259
+ F+ +L L + L L L L + + F+
Sbjct: 90 VIT--MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 147
Query: 260 RFTCLQELDISHNPLIDAFTA-LLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILS 318
+ L+ L ++ N + F + + L +L LD+ L+++S + F ++SL+ L +S
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207
Query: 319 GNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLH 374
N +L++ ++ L L VL+ + + + + L L L+ N
Sbjct: 208 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS--SLAFLNLTQNDFA 261
Score = 155 bits (395), Expect = 9e-43
Identities = 67/315 (21%), Positives = 116/315 (36%), Gaps = 49/315 (15%)
Query: 242 RLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRI 301
+ + GL+ +P L++ N L + L L L + + L
Sbjct: 11 EIRCNSKGLTSVPTGIPSS---ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67
Query: 302 S--RSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNET-VFHENY 358
+ TSLK L LS N + T+ S F L L L+ + L +++E VF
Sbjct: 68 GCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSL- 125
Query: 359 TYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPD 418
+L L +S V + F+ L
Sbjct: 126 --RNLIYLDISHTHTRVAFNGI---------------FNGL-----------------SS 151
Query: 419 LEELRLSGNP-LHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANN 477
LE L+++GN L L LDLS+C+++ L P FN+ ++ LN+++N
Sbjct: 152 LEVLKMAGNSFQENFLPDIFTE--LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209
Query: 478 NLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRH-NRAITSIKLVGNPWKCDCNI 536
N ++ L+ L+ LD S N++ L+H ++ + L N + C C
Sbjct: 210 NFFSLDTFPYKCLN---SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 266
Query: 537 ADMWEWATREKGDIG 551
+W ++ +
Sbjct: 267 QSFLQWIKDQRQLLV 281
Score = 154 bits (390), Expect = 5e-42
Identities = 61/237 (25%), Positives = 95/237 (40%), Gaps = 8/237 (3%)
Query: 41 SLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIE--PGVFDPLTSLEYLMLNRC 98
S L ++ L + F LT L KL LS N L TSL+YL L+
Sbjct: 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88
Query: 99 NLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVF 158
+ + S F L L+ L+ + LK +++ V +L L LD+ + + +F
Sbjct: 89 GVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFS-VFLSLRNLIYLDISHTHTRVAFNGIF 146
Query: 159 ANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTL 218
+ L L +A N + + L +L LDLS C L+ LS AF + + L+ L
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDIF-TELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVL 204
Query: 219 YLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTF-HRFTCLQELDISHNPL 274
+S N + D K L L L + H + L L+++ N
Sbjct: 205 NMSHNNFFSLDTF-PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260
Score = 135 bits (342), Expect = 1e-35
Identities = 49/215 (22%), Positives = 87/215 (40%), Gaps = 10/215 (4%)
Query: 17 PGLITINLNANPIQPVE---GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSG 73
L ++L++N + + SL YL + + + F L L LD
Sbjct: 52 TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQH 110
Query: 74 NPL-RIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTL 132
+ L ++ E VF L +L YL ++ + F+ L+ L+ L+++ N + + +
Sbjct: 111 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 170
Query: 133 VLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDS 192
L L LDL Q + L F + + L+ LN++ N LD + L L
Sbjct: 171 -FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP--YKCLNSLQV 227
Query: 193 LDLSNCHLKGPLSEDAFVN-ATKLRTLYLSGNPLS 226
LD S H+ + + + L L L+ N +
Sbjct: 228 LDYSLNHIMT-SKKQELQHFPSSLAFLNLTQNDFA 261
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 162 bits (412), Expect = 1e-44
Identities = 93/360 (25%), Positives = 153/360 (42%), Gaps = 33/360 (9%)
Query: 18 GLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLR 77
G T+ PI + + +Q+ +++ + L ++ KL ++G +
Sbjct: 1 GAATLATLPAPINQIF-PDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57
Query: 78 IIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNL 137
I+ + LT+LEYL LN +T ISP NL L L + NK+ I L NL
Sbjct: 58 SIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-IS---ALQNL 109
Query: 138 GKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSN 197
L L L + IS++ AN T + +LNL N + + L N+ L+ L ++
Sbjct: 110 TNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSD--LSPLS-NMTGLNYLTVTE 164
Query: 198 CHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANT 257
+K N T L +L L+ N + D+S L LT LH + ++ +
Sbjct: 165 SKVKDV---TPIANLTDLYSLSLNYNQIE--DIS-PLASLTSLHYFTAYVNQITDITP-- 216
Query: 258 FHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLIL 317
T L L I +N + D + L+ L L L++G + + I + +T LK L +
Sbjct: 217 VANMTRLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNV 272
Query: 318 SGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLP 377
N++ + NL+ L+ L LNN L + V +L L LS N + +
Sbjct: 273 GSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGL---TNLTTLFLSQNHITDIR 327
Score = 156 bits (397), Expect = 1e-42
Identities = 76/332 (22%), Positives = 137/332 (41%), Gaps = 32/332 (9%)
Query: 19 LITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRI 78
+ + + + ++G +L YL + ++ I+P +NL L L + N +
Sbjct: 46 ITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD 102
Query: 79 IEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLG 138
I LT+L L LN N++ ISP NL + +L L N S + L N+
Sbjct: 103 ISA--LQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS---PLSNMT 155
Query: 139 KLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNC 198
L+ L + +S + ++ AN T L +L+L N++ D+ L +L L
Sbjct: 156 GLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDIS---PLA-SLTSLHYFTAYVN 209
Query: 199 HLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTF 258
+ N T+L +L + N ++ DLS L L++L L + +S + A
Sbjct: 210 QITDI---TPVANMTRLNSLKIGNNKIT--DLS-PLANLSQLTWLEIGTNQISDINA--V 261
Query: 259 HRFTCLQELDISHNPL--IDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLI 316
T L+ L++ N + I + L L L + + L +T+L TL
Sbjct: 262 KDLTKLKMLNVGSNQISDISVL----NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF 317
Query: 317 LSGNKLETLESGLFQNLTHLSVLELNNCGLTR 348
LS N + + +L+ + + N + +
Sbjct: 318 LSQNHITDIRP--LASLSKMDSADFANQVIKK 347
Score = 150 bits (381), Expect = 2e-40
Identities = 84/442 (19%), Positives = 157/442 (35%), Gaps = 97/442 (21%)
Query: 66 LNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLK 125
L P+ I P L +L + ++T + + L + L ++ K+
Sbjct: 2 AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57
Query: 126 SHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQ 185
S + L L+ L+L + I+++ +N L NL + N++ D+ Q
Sbjct: 58 SIQG----IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISA----LQ 107
Query: 186 NLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSL 245
NL +L L L+ ++ N TK+ +L L N + L +T L+ L++
Sbjct: 108 NLTNLRELYLNEDNISDI---SPLANLTKMYSLNLGANHNLS--DLSPLSNMTGLNYLTV 162
Query: 246 RNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRST 305
+ + T L L +++N + D +SPL SL
Sbjct: 163 TESKVKDVTP--IANLTDLYSLSLNYNQIED-----ISPLASL----------------- 198
Query: 306 FLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEE 365
TSL N++ + N+T L+ L++ N +T L+ L
Sbjct: 199 ----TSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLANLSQ-----LTW 247
Query: 366 LRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLS 425
L + N + + L L+ L +
Sbjct: 248 LEIGTNQISDIN-----------------AVKDL-----------------TKLKMLNVG 273
Query: 426 GNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSEL 485
N + + N LS+L SL L+ ++ V N+T+L L+ N+++
Sbjct: 274 SNQISDISVLN----NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT----- 324
Query: 486 SFQFLDVLLELESLDLSNNNLT 507
+ L L +++S D +N +
Sbjct: 325 DIRPLASLSKMDSADFANQVIK 346
Score = 138 bits (350), Expect = 4e-36
Identities = 75/416 (18%), Positives = 142/416 (34%), Gaps = 73/416 (17%)
Query: 114 LKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENE 173
TL + +L + L+++ ++++ + L +A +
Sbjct: 2 AATLATLPAPINQIFP----DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEK 55
Query: 174 LIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVA 233
+ + + L +L+ L+L+ + N KL LY+ N ++ D+S A
Sbjct: 56 VASIQGI----EYLTNLEYLNLNGNQITDI---SPLSNLVKLTNLYIGTNKIT--DIS-A 105
Query: 234 LKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDM 293
L+ LT L L L +S + T + L++ N + + L S + L +L +
Sbjct: 106 LQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPL-SNMTGLNYLTV 162
Query: 294 GYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETV 353
S ++ ++ +T L +L L+ N++E + +LT L +T +
Sbjct: 163 TESKVKDVT--PIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP-- 216
Query: 354 FHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHEN 413
L L++ N + L L
Sbjct: 217 VANM---TRLNSLKIGNNKITDLS-----------------PLANL-------------- 242
Query: 414 YTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLN 473
L L + N + + L++L+ L++ +I + NN + SL
Sbjct: 243 ---SQLTWLEIGTNQISDINAVK----DLTKLKMLNVGSNQISDISV--LNNLSQLNSLF 293
Query: 474 LANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNP 529
L NN L L L +L LS N++T I P L + S
Sbjct: 294 LNNNQLGNEDMEVIGGLT---NLTTLFLSQNHITDIRP--LASLSKMDSADFANQV 344
Score = 134 bits (339), Expect = 1e-34
Identities = 65/307 (21%), Positives = 130/307 (42%), Gaps = 26/307 (8%)
Query: 17 PGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPL 76
L +NLN N I + L LY+ ++ I+ NLT L +L L+ + +
Sbjct: 66 TNLEYLNLNGNQITDIS-PLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNI 122
Query: 77 RIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGN 136
I P LT + L L + S N+ L L ++++K+ + + N
Sbjct: 123 SDISP--LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKV-KDVT---PIAN 175
Query: 137 LGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLS 196
L L +L L + I ++ A+ T L N++ D+ + N+ L+SL +
Sbjct: 176 LTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP---VA-NMTRLNSLKIG 229
Query: 197 NCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPAN 256
N + N ++L L + N +S D++ A+K LTKL L++ + +S +
Sbjct: 230 NNKITDL---SPLANLSQLTWLEIGTNQIS--DIN-AVKDLTKLKMLNVGSNQISDISV- 282
Query: 257 TFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLI 316
+ + L L +++N L + ++ L +L L + +++ I ++ + +
Sbjct: 283 -LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR--PLASLSKMDSAD 339
Query: 317 LSGNKLE 323
+ ++
Sbjct: 340 FANQVIK 346
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 162 bits (411), Expect = 1e-43
Identities = 63/305 (20%), Positives = 111/305 (36%), Gaps = 46/305 (15%)
Query: 239 KLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNL 298
+ ++ L +P + L++ N + L LE L + +++
Sbjct: 44 QFSKVICVRKNLREVPDGISTN---TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100
Query: 299 QRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENY 358
+ I F + +L TL L N+L T+ +G F L+ L L L N + + F+
Sbjct: 101 RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR-- 158
Query: 359 TYPDLEELRLSG-NPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYP 417
P L L L L + + F+ L
Sbjct: 159 -IPSLRRLDLGELKRLSYISEGA---------------FEGL-----------------S 185
Query: 418 DLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANN 477
+L L L+ L +P L +L LDLS + + P F ++ L + +
Sbjct: 186 NLRYLNLAMCNLREIPNLT----PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241
Query: 478 NLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIA 537
+ + +F L L ++L++NNLT + + + I L NPW C+C+I
Sbjct: 242 QIQVIERNAFDNLQ---SLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDIL 298
Query: 538 DMWEW 542
+ W
Sbjct: 299 WLSWW 303
Score = 156 bits (397), Expect = 8e-42
Identities = 65/259 (25%), Positives = 105/259 (40%), Gaps = 32/259 (12%)
Query: 17 PGLITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP 75
+NL+ N IQ ++ +F R L L + + I F L LN L+L N
Sbjct: 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123
Query: 76 LRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLG 135
L I G F L+ L+ L L + I AF+ + L+ L+L + K
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKR----------- 172
Query: 136 NLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDL 195
+S + + F + LR LNLA L ++ L+ LD LDL
Sbjct: 173 --------------LSYISEGAFEGLSNLRYLNLAMCNLREIPN----LTPLIKLDELDL 214
Query: 196 SNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPA 255
S HL + +F L+ L++ + + + + A L L ++L + L+ LP
Sbjct: 215 SGNHLSA-IRPGSFQGLMHLQKLWMIQSQIQVIERN-AFDNLQSLVEINLAHNNLTLLPH 272
Query: 256 NTFHRFTCLQELDISHNPL 274
+ F L+ + + HNP
Sbjct: 273 DLFTPLHHLERIHLHHNPW 291
Score = 148 bits (376), Expect = 7e-39
Identities = 74/294 (25%), Positives = 116/294 (39%), Gaps = 45/294 (15%)
Query: 138 GKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSN 197
+ + + + +PD + N R LNL EN++ + V + ++L HL+ L LS
Sbjct: 43 NQFSKVICVRKNLREVPDGISTN---TRLLNLHENQIQIIKVNSF--KHLRHLEILQLSR 97
Query: 198 CHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANT 257
H++ + AF L TL L N L+ + A L+KL L LRN + +P+
Sbjct: 98 NHIRT-IEIGAFNGLANLNTLELFDNRLTTIP-NGAFVYLSKLKELWLRNNPIESIPSYA 155
Query: 258 FHRFTCLQELDISHNPLIDAFTA-LLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLI 316
F+R L+ LD+ + + L +L +L++ NL+ I + L L
Sbjct: 156 FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI--PNLTPLIKLDELD 213
Query: 317 LSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVL 376
LSGN L + G FQ L HL L + + + F L E+ L+ N L +L
Sbjct: 214 LSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL---QSLVEINLAHNNLTLL 270
Query: 377 PDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLH 430
P F L LE + L NP +
Sbjct: 271 PHDL---------------FTPL-----------------HHLERIHLHHNPWN 292
Score = 50.1 bits (120), Expect = 1e-06
Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 6/86 (6%)
Query: 443 SRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLS 502
++ + R + +P + NT LNL N + + SF+ L LE L LS
Sbjct: 43 NQFSKVICVRKNLREVPDGISTNT---RLLNLHENQIQIIKVNSFKHLR---HLEILQLS 96
Query: 503 NNNLTHISPTVLRHNRAITSIKLVGN 528
N++ I + +++L N
Sbjct: 97 RNHIRTIEIGAFNGLANLNTLELFDN 122
Score = 41.3 bits (97), Expect = 8e-04
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 17 PGLITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP 75
L + + + IQ +E AF +SL+ + + L+ + FT L L ++ L NP
Sbjct: 231 MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290
Query: 76 LR 77
Sbjct: 291 WN 292
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 155 bits (395), Expect = 6e-43
Identities = 60/263 (22%), Positives = 95/263 (36%), Gaps = 41/263 (15%)
Query: 287 SLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLEL-NNCG 345
+ + + + + + + ++F +L L L N L +++ F L L L+L +N
Sbjct: 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92
Query: 346 LTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFIL 405
L ++ FH L L L L L F L
Sbjct: 93 LRSVDPATFHGL---GRLHTLHLDRCGLQELGPGL---------------FRGL------ 128
Query: 406 NETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNN 465
L+ L L N L LP L L L L +I +P F
Sbjct: 129 -----------AALQYLYLQDNALQALPDDTFRD--LGNLTHLFLHGNRISSVPERAFRG 175
Query: 466 TRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKL 525
++ L L N ++ +F+ L L +L L NNL+ + L RA+ ++L
Sbjct: 176 LHSLDRLLLHQNRVAHVHPHAFRDLG---RLMTLYLFANNLSALPTEALAPLRALQYLRL 232
Query: 526 VGNPWKCDCNIADMWEWATREKG 548
NPW CDC +W W + +G
Sbjct: 233 NDNPWVCDCRARPLWAWLQKFRG 255
Score = 143 bits (363), Expect = 2e-38
Identities = 64/211 (30%), Positives = 94/211 (44%), Gaps = 7/211 (3%)
Query: 17 PGLITINLNANPIQPV-EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP 75
I L+ N I V +F R+L L++ L++I+ FT L L +LDLS N
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91
Query: 76 -LRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVL 134
LR ++P F L L L L+RC L + P F L L+ L L N L +
Sbjct: 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL-QALPDD-TF 149
Query: 135 GNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLD 194
+LG L L L + IS++P+ F L L L +N + + ++L L +L
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF--RDLGRLMTLY 207
Query: 195 LSNCHLKGPLSEDAFVNATKLRTLYLSGNPL 225
L +L L +A L+ L L+ NP
Sbjct: 208 LFANNLSA-LPTEALAPLRALQYLRLNDNPW 237
Score = 143 bits (363), Expect = 2e-38
Identities = 59/211 (27%), Positives = 86/211 (40%), Gaps = 5/211 (2%)
Query: 64 TTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNK 123
++ L GN + + F +L L L+ L I +AF L L+ L+LS N
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91
Query: 124 LKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTL 183
+D LG+L TL L + G+ L +F L+ L L +N L L T
Sbjct: 92 QLRSVDPA-TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF- 149
Query: 184 GQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRL 243
++L +L L L + + E AF L L L N ++ A + L +L L
Sbjct: 150 -RDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVH-PHAFRDLGRLMTL 206
Query: 244 SLRNCGLSRLPANTFHRFTCLQELDISHNPL 274
L LS LP LQ L ++ NP
Sbjct: 207 YLFANNLSALPTEALAPLRALQYLRLNDNPW 237
Score = 131 bits (332), Expect = 2e-34
Identities = 54/242 (22%), Positives = 85/242 (35%), Gaps = 38/242 (15%)
Query: 190 LDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSL-RNC 248
+ L + + +F L L+L N L+ D + A L L +L L N
Sbjct: 34 SQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNA 91
Query: 249 GLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLK 308
L + TFH L L + L + L L +L++L + + LQ + TF
Sbjct: 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151
Query: 309 MTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRL 368
+ +L L L GN++ ++ F+ L L L L+ + ++ F + L L L
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL---GRLMTLYL 208
Query: 369 SGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNP 428
N L LP L L+ LRL+ NP
Sbjct: 209 FANNLSALPTEA---------------LAPL-----------------RALQYLRLNDNP 236
Query: 429 LH 430
Sbjct: 237 WV 238
Score = 69.3 bits (170), Expect = 4e-13
Identities = 21/112 (18%), Positives = 38/112 (33%), Gaps = 4/112 (3%)
Query: 417 PDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLAN 476
+ + L GN + +P + L L L + + F + L+L++
Sbjct: 32 AASQRIFLHGNRISHVPAASF--RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89
Query: 477 NNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGN 528
N + L L +L L L + P + R A+ + L N
Sbjct: 90 NAQL--RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN 139
Score = 46.5 bits (111), Expect = 1e-05
Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 6/87 (6%)
Query: 443 SRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLS 502
+ + + +P + + + L N +S SF+ L L L
Sbjct: 11 EPKVTTSCPQQGLQAVPVGIPAAS---QRIFLHGNRISHVPAASFRACR---NLTILWLH 64
Query: 503 NNNLTHISPTVLRHNRAITSIKLVGNP 529
+N L I + + L N
Sbjct: 65 SNVLARIDAAAFTGLALLEQLDLSDNA 91
Score = 40.0 bits (94), Expect = 0.002
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 17 PGLITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP 75
L + L+ N + V AF L+ LY+ LS + + L L L L+ NP
Sbjct: 177 HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236
Query: 76 LR 77
Sbjct: 237 WV 238
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 151 bits (384), Expect = 4e-41
Identities = 47/288 (16%), Positives = 98/288 (34%), Gaps = 20/288 (6%)
Query: 57 PQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKT 116
+ N ++ + L+ + +++ L L+ L+ IS + L+
Sbjct: 3 HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62
Query: 117 LELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELID 176
L LS N L +D L +L L TLDL + + L + L+ A N +
Sbjct: 63 LNLSSNVLYETLD----LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISR 113
Query: 177 LDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKP 236
+ + ++ L+N + L + ++++ L L N + + +
Sbjct: 114 VSCSR-----GQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167
Query: 237 LTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYS 296
L L+L+ + + F L+ LD+S N + + + + +
Sbjct: 168 SDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN 224
Query: 297 NLQRISRSTFLKMTSLKTLILSGNKLETL-ESGLFQNLTHLSVLELNN 343
L I ++ +L+ L GN F + +
Sbjct: 225 KLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271
Score = 145 bits (369), Expect = 4e-39
Identities = 61/306 (19%), Positives = 111/306 (36%), Gaps = 20/306 (6%)
Query: 40 RSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCN 99
+ + +L + + + +LDLSGNPL I P T LE L L+
Sbjct: 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69
Query: 100 LTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFA 159
L ++L+ L+TL+L+ N ++ L ++TL + IS + +
Sbjct: 70 LYETLD--LESLSTLRTLDLNNNYVQE-------LLVGPSIETLHAANNNISRVSCSRGQ 120
Query: 160 NNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLY 219
+N+ LA N++ L + LDL + + ++ L L
Sbjct: 121 G---KKNIYLANNKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175
Query: 220 LSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFT 279
L N + KL L L + L+ + F + + + +N L+
Sbjct: 176 LQYNFIYDVK---GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-IE 230
Query: 280 ALLSPLESLEHLDMGYSNLQRIS-RSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSV 338
L ++LEH D+ + + R F K ++T+ K T ++ + L
Sbjct: 231 KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGH 290
Query: 339 LELNNC 344
C
Sbjct: 291 YGAYCC 296
Score = 133 bits (338), Expect = 7e-35
Identities = 51/377 (13%), Positives = 113/377 (29%), Gaps = 65/377 (17%)
Query: 133 VLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDS 192
+ N + + S + ++ + ++ L+L+ N L + A L+
Sbjct: 5 IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADL--APFTKLEL 62
Query: 193 LDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSR 252
L+LS+ L L + + LRTL L+ N + L + L N +SR
Sbjct: 63 LNLSSNVLYETLD---LESLSTLRTLDLNNNYVQE------LLVGPSIETLHAANNNISR 113
Query: 253 LPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFL-KMTS 311
+ + + + +++N + +++LD+ + + ++ + +
Sbjct: 114 VSCSRG---QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170
Query: 312 LKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGN 371
L+ L L N + ++ + L L+L++ L + + + L N
Sbjct: 171 LEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPEFQSA----AGVTWISLRNN 224
Query: 372 PLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHV 431
L ++ + F +LE L GN H
Sbjct: 225 KLVLIEKA----------------LRFS-----------------QNLEHFDLRGNGFHC 251
Query: 432 LPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLD 491
LR ++ + L + L
Sbjct: 252 GT-----------LRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLP 300
Query: 492 VLLELESLDLSNNNLTH 508
+ L +++ H
Sbjct: 301 APFADRLIALGHHHHHH 317
Score = 133 bits (337), Expect = 1e-34
Identities = 59/311 (18%), Positives = 109/311 (35%), Gaps = 54/311 (17%)
Query: 207 DAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQE 266
+ N + + ++ + L A S + + L L LS++ A FT L+
Sbjct: 4 EIKQNGNRYKIEKVTDSSLKQALAS-LRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62
Query: 267 LDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLE 326
L++S N L + L L +L LD+ + +Q + S++TL + N + +
Sbjct: 63 LNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVS 115
Query: 327 SGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMR 386
Q ++ L N +T L + ++ L L N + + + S
Sbjct: 116 CSRGQGKKNIY---LANNKITMLRDLDEG---CRSRVQYLDLKLNEIDTVNFAELAASS- 168
Query: 387 TIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLR 446
LE L L N ++ + ++L+
Sbjct: 169 ------------------------------DTLEHLNLQYNFIYDVKGQ----VVFAKLK 194
Query: 447 SLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNL 506
+LDLS K+ ++ P F + +T ++L NN L + + L LE DL N
Sbjct: 195 TLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKA----LRFSQNLEHFDLRGNGF 249
Query: 507 THISPTVLRHN 517
+
Sbjct: 250 HCGTLRDFFSK 260
Score = 132 bits (334), Expect = 2e-34
Identities = 55/332 (16%), Positives = 112/332 (33%), Gaps = 25/332 (7%)
Query: 12 RNLDNPGLITINLNANPIQPV-EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLD 70
+N + + + ++ A ++ L + LS+I+ T L L+
Sbjct: 7 QNGNR--YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64
Query: 71 LSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDW 130
LS N L + L++L L LN + + ++TL + N +
Sbjct: 65 LSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISR---- 113
Query: 131 TLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHL 190
+ + L + I+ L D + ++ L+L NE+ ++ A + L
Sbjct: 114 -VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA-SSDTL 171
Query: 191 DSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGL 250
+ L+L + + KL+TL LS N L+ + + + +SLRN L
Sbjct: 172 EHLNLQYNFIYD-VKGQVVF--AKLKTLDLSSNKLA--FMGPEFQSAAGVTWISLRNNKL 226
Query: 251 SRLPANTFHRFTCLQELDISHNPL-IDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKM 309
+ L+ D+ N S + ++ + +++++ +
Sbjct: 227 VLIE-KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA--KQTVKKLTGQNEEEC 283
Query: 310 TSLKTLILSGNKLETLESGLFQNLTHLSVLEL 341
T E L + L L
Sbjct: 284 TVPTLGHYGAYCCEDLPAPFADRLIALGHHHH 315
Score = 115 bits (291), Expect = 1e-28
Identities = 55/294 (18%), Positives = 102/294 (34%), Gaps = 75/294 (25%)
Query: 264 LQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLE 323
+ ++ + L A +L +++ LD+ + L +IS + T L+ L LS N L
Sbjct: 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71
Query: 324 TLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQY 383
++L+ L L+LNN + L P +E L + N +
Sbjct: 72 ETLD--LESLSTLRTLDLNNNYVQELLVG--------PSIETLHAANNNI---------- 111
Query: 384 SMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLS 443
+ + + + L+ N + +L + S
Sbjct: 112 --SRVSCSRGQG-----------------------KKNIYLANNKITMLRDLDEG--CRS 144
Query: 444 RLRSLDLSRCKIDYLP-PNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLS 502
R++ LDL +ID + + ++ + LNL N + +L++LDLS
Sbjct: 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-----FAKLKTLDLS 199
Query: 503 NNNLTHISPTV----------LRHNR------------AITSIKLVGNPWKCDC 534
+N L + P LR+N+ + L GN + C
Sbjct: 200 SNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGT 253
Score = 106 bits (266), Expect = 2e-25
Identities = 38/248 (15%), Positives = 71/248 (28%), Gaps = 59/248 (23%)
Query: 285 LESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNC 344
+ + S+L++ S ++K L LSGN L + + T L +L L++
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68
Query: 345 GLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFI 404
L + L L L+ N + L
Sbjct: 69 VLYETLD--LESL---STLRTLDLNNNYVQELLVGPS----------------------- 100
Query: 405 LNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFN 464
+E L + N + + +++ L+ KI L
Sbjct: 101 --------------IETLHAANNNISRVSCSRG-----QGKKNIYLANNKITMLRDLDEG 141
Query: 465 NTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTV---------LR 515
+ L+L N + + LE L+L N + + V L
Sbjct: 142 CRSRVQYLDLKLNEIDTVNFAE--LAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLS 199
Query: 516 HNRAITSI 523
N+ + +
Sbjct: 200 SNK-LAFM 206
Score = 75.0 bits (185), Expect = 9e-15
Identities = 29/226 (12%), Positives = 61/226 (26%), Gaps = 74/226 (32%)
Query: 303 RSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPD 362
K ++ + L+ + L Q+ ++ L+L+ L++++ +
Sbjct: 3 HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAP---FTK 59
Query: 363 LEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEEL 422
LE L LS N L+ D + L L L
Sbjct: 60 LELLNLSSNVLYETLD-----------------LESL-----------------STLRTL 85
Query: 423 RLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMT 482
L+ N + L + +L + I + +
Sbjct: 86 DLNNNYVQELL-------VGPSIETLHAANNNISRVSCSRGQG----------------- 121
Query: 483 SELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGN 528
+++ L+NN +T + + + L N
Sbjct: 122 -------------KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 156 bits (397), Expect = 5e-40
Identities = 104/482 (21%), Positives = 189/482 (39%), Gaps = 49/482 (10%)
Query: 40 RSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDP--LTSLEYLMLNR 97
+L +L + LS + + T L L++S N G P L SL+YL L
Sbjct: 223 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV----GPIPPLPLKSLQYLSLAE 278
Query: 98 CNLT-YISPSAFDNLNHLKTLELSQNKLKSHI-DWTLVLGNLGKLDTLDLRQSGIS-NLP 154
T I + L L+LS N + + G+ L++L L + S LP
Sbjct: 279 NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF---FGSCSLLESLALSSNNFSGELP 335
Query: 155 DNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPL-SEDAFVNAT 213
+ L+ L+L+ NE ++ +L L +LDLS+ + GP+
Sbjct: 336 MDTLLKMRGLKVLDLSFNEFSG-ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 394
Query: 214 KLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLS-RLPANTFHRFTCLQELDISHN 272
L+ LYL N + + L ++L L L LS +P ++ + L++L + N
Sbjct: 395 TLQELYLQNNGFTG-KIPPTLSNCSELVSLHLSFNYLSGTIP-SSLGSLSKLRDLKLWLN 452
Query: 273 PLIDAFTALLSPLESLEHLDMGYSNLQ-RISRSTFLKMTSLKTLILSGNKLETLESGLF- 330
L L +++LE L + +++L I T+L + LS N+L +G
Sbjct: 453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSG-LSNCTNLNWISLSNNRL----TGEIP 507
Query: 331 ---QNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRT 387
L +L++L+L+N + + E L L L+ N + T
Sbjct: 508 KWIGRLENLAILKLSNN---SFSGNIPAELGDCRSLIWLDLNTNLFN-----------GT 553
Query: 388 IPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRS 447
IP ++K + + + +E +GN L + +LS
Sbjct: 554 IPAAMFKQS-GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 612
Query: 448 LDLSRCKIDYLPPNVFNNTRNITSLNLANNNLS--MTSELSFQFLDVLLELESLDLSNNN 505
+++ F+N ++ L+++ N LS + E+ + L L+L +N+
Sbjct: 613 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS-----MPYLFILNLGHND 667
Query: 506 LT 507
++
Sbjct: 668 IS 669
Score = 156 bits (396), Expect = 6e-40
Identities = 100/467 (21%), Positives = 162/467 (34%), Gaps = 56/467 (11%)
Query: 62 NLTTLNKLDLSGNPLRIIE---PGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLE 118
+ +DLS PL + LT LE L L+ ++ F L +L+
Sbjct: 48 RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLD 106
Query: 119 LSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGIS-NLPDNVFANNTWLRNLNLAENELI-D 176
LS+N L + LG+ L L++ + + + L L+L+ N +
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGA 166
Query: 177 LDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKP 236
V L L L +S + G + L L +S N S +
Sbjct: 167 NVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTGIPFLGD-- 221
Query: 237 LTKLHRLSLRNCGLS-RLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGY 295
+ L L + LS T L+ L+IS N + PL+SL++L +
Sbjct: 222 CSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAE 278
Query: 296 SNLQ-RISRSTFLKMTSLKTLILSGNKLE-TLESGLFQNLTHLSVLELNNCGLT-RLNET 352
+ I +L L LSGN + + + L L L++ + L
Sbjct: 279 NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG-SCSLLESLALSSNNFSGELPMD 337
Query: 353 VFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFI----LNET 408
L+ L LS N +P + L+ L + +
Sbjct: 338 TLL---KMRGLKVLDLSFNEFS-----------GELPESLTNLSASLLTLDLSSNNFSGP 383
Query: 409 VFHE--NYTYPDLEELRLSGNPLHVLPTGNLLPP---QLSRLRSLDLSRCKID-YLPPNV 462
+ L+EL L N TG +PP S L SL LS + +P ++
Sbjct: 384 ILPNLCQNPKNTLQELYLQNNGF----TGK-IPPTLSNCSELVSLHLSFNYLSGTIPSSL 438
Query: 463 FNNTRNITSLNLANNNLS--MTSELSFQFLDVLLELESLDLSNNNLT 507
+ + + L L N L + EL + + LE+L L N+LT
Sbjct: 439 GSLS-KLRDLKLWLNMLEGEIPQELMY-----VKTLETLILDFNDLT 479
Score = 153 bits (389), Expect = 4e-39
Identities = 119/515 (23%), Positives = 190/515 (36%), Gaps = 77/515 (14%)
Query: 17 PGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQF--FTNLTTLNKLDLSGN 74
GL ++ L+ + I F + SL L + +LS + + L L++S N
Sbjct: 77 TGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSN 136
Query: 75 PLRI-IEPGVFDPLTSLEYLMLNRCNLTYISPSAFD---NLNHLKTLELSQNKLKSHIDW 130
L + L SLE L L+ +++ + + LK L +S NK+ +D
Sbjct: 137 TLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD- 195
Query: 131 TLVLGNLGKLDTLDLRQSGIS-NLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVH 189
+ L+ LD+ + S +P LG +
Sbjct: 196 ---VSRCVNLEFLDVSSNNFSTGIPF---------------------------LG-DCSA 224
Query: 190 LDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCG 249
L LD+S L G S A T+L+ L +S N + PL L LSL
Sbjct: 225 LQHLDISGNKLSGDFSR-AISTCTELKLLNISSNQFVG---PIPPLPLKSLQYLSLAENK 280
Query: 250 LS-RLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQ-RISRSTFL 307
+ +P L LD+S N A LE L + +N + T L
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 340
Query: 308 KMTSLKTLILSGNKLE-TLESGLFQNLTHLSVLELNNCGLT-RLNETVFHENYTYPDLEE 365
KM LK L LS N+ L L L L+L++ + + + L+E
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC--QNPKNTLQE 398
Query: 366 LRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFI----LNETVFHENYTYPDLEE 421
L L N IP + N LV L + L+ T+ + L +
Sbjct: 399 LYLQNNGFT-----------GKIPPTLS-NCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 446
Query: 422 LRLSGNPLHVLPTGNLLP--PQLSRLRSLDLSRCKID-YLPPNVFNNTRNITSLNLANNN 478
L+L N L G + + L +L L + +P + N T N+ ++L+NN
Sbjct: 447 LKLWLNMLE----GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT-NLNWISLSNNR 501
Query: 479 LSMTSELSFQFLDVLLELESLDLSNNNLT-HISPT 512
L+ E+ +++ L L L LSNN+ + +I
Sbjct: 502 LT--GEIP-KWIGRLENLAILKLSNNSFSGNIPAE 533
Score = 148 bits (377), Expect = 1e-37
Identities = 105/498 (21%), Positives = 173/498 (34%), Gaps = 44/498 (8%)
Query: 41 SLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNL 100
L +L + +S + L LD+S N P + D ++L++L ++ L
Sbjct: 179 ELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGD-CSALQHLDISGNKL 235
Query: 101 TYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGIS-NLPDNVFA 159
+ A LK L +S N+ I L L L L ++ + +PD +
Sbjct: 236 SGDFSRAISTCTELKLLNISSNQFVGPIPPL----PLKSLQYLSLAENKFTGEIPDFLSG 291
Query: 160 NNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLY 219
L L+L+ N V G + L+SL LS+ + G L D + L+ L
Sbjct: 292 ACDTLTGLDLSGNHFYG-AVPPFFG-SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLD 349
Query: 220 LSGNPLSAADLSVALKPLTKLHRLSLRNCGLS-RLPANTFH-RFTCLQELDISHNPLIDA 277
LS N S L L L + S + N LQEL + +N
Sbjct: 350 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 409
Query: 278 FTALLSPLESLEHLDMGYSNLQ-RISRSTFLKMTSLKTLILSGNKLE-TLESGLFQNLTH 335
LS L L + ++ L I S ++ L+ L L N LE + L +
Sbjct: 410 IPPTLSNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLNMLEGEIPQELM-YVKT 467
Query: 336 LSVLELNNCGLT-RLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWK 394
L L L+ LT + + + +L + LS N L IP I
Sbjct: 468 LETLILDFNDLTGEIPSGLSN----CTNLNWISLSNNRLT-----------GEIPKWIG- 511
Query: 395 NFDFLVILFI----LNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDL 450
+ L IL + + + E L L L+ N G + P + + S +
Sbjct: 512 RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF----NGTI-PAAMFKQ-SGKI 565
Query: 451 SRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHIS 510
+ I N + A N L S Q L+ L ++++ +
Sbjct: 566 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ-LNRLSTRNPCNITSRVYGGHT 624
Query: 511 PTVLRHNRAITSIKLVGN 528
+N ++ + + N
Sbjct: 625 SPTFDNNGSMMFLDMSYN 642
Score = 139 bits (352), Expect = 2e-34
Identities = 104/501 (20%), Positives = 168/501 (33%), Gaps = 63/501 (12%)
Query: 40 RSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLR-IIEPGVFDPLTSLEYLMLNRC 98
L L + P L +L L L+ N I + +L L L+
Sbjct: 247 TELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 304
Query: 99 NLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGIS-NLPDNV 157
+ P F + + L++L LS N + L + L LDL + S LP+++
Sbjct: 305 HFYGAVPPFFGSCSLLESLALSSNNFSGELP-MDTLLKMRGLKVLDLSFNEFSGELPESL 363
Query: 158 FANNTWLRNLNLAENELIDLDVATTLGQN-LVHLDSLDLSNCHLKGPLSEDAFVNATKLR 216
+ L L+L+ N + L QN L L L N G + N ++L
Sbjct: 364 TNLSASLLTLDLSSNNFSG-PILPNLCQNPKNTLQELYLQNNGFTGKIP-PTLSNCSELV 421
Query: 217 TLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLS-RLPANTFHRFTCLQELDISHNPLI 275
+L+LS N LS + +L L+KL L L L +P L+ L + N L
Sbjct: 422 SLHLSFNYLSGT-IPSSLGSLSKLRDLKLWLNMLEGEIP-QELMYVKTLETLILDFNDLT 479
Query: 276 DAFTALLSPLESLEHLDMGYSNLQ-RISRSTFLKMTSLKTLILSGNKLETLESGL----F 330
+ LS +L + + + L I ++ +L L LS N SG
Sbjct: 480 GEIPSGLSNCTNLNWISLSNNRLTGEIP-KWIGRLENLAILKLSNNSF----SGNIPAEL 534
Query: 331 QNLTHLSVLELNN--------CGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQ 382
+ L L+LN + + + + ++ G
Sbjct: 535 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 594
Query: 383 YSMRTIPTQIWKNFDFLVILFI----LNETVFHENYTYPDLEELRLSGNPLHVLPTGNLL 438
Q+ I + L +S N L +G +
Sbjct: 595 EFQGIRSEQLN-RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML----SGYI- 648
Query: 439 PP---QLSRLRSLDLSR----CKIDYLPPNVFNNTRNITSLNLANNNLSMT-----SELS 486
P + L L+L I P+ + R + L+L++N L S L+
Sbjct: 649 PKEIGSMPYLFILNLGHNDISGSI----PDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 704
Query: 487 FQFLDVLLELESLDLSNNNLT 507
L +DLSNNNL+
Sbjct: 705 M--------LTEIDLSNNNLS 717
Score = 55.3 bits (134), Expect = 5e-08
Identities = 35/163 (21%), Positives = 60/163 (36%), Gaps = 11/163 (6%)
Query: 16 NPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP 75
G I N A V + + I + L+T N +++
Sbjct: 561 QSGKIAANFIAGKR-YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRV 619
Query: 76 LRIIEPGVFDPLTSLEYLMLNRCNLT-YISPSAFDNLNHLKTLELSQNKLKSHIDWTLVL 134
FD S+ +L ++ L+ YI P ++ +L L L N + I +
Sbjct: 620 YGGHTSPTFDNNGSMMFLDMSYNMLSGYI-PKEIGSMPYLFILNLGHNDISGSIPDE--V 676
Query: 135 GNLGKLDTLDL---RQSGISNLPDNVFANNTWLRNLNLAENEL 174
G+L L+ LDL + G +P + T L ++L+ N L
Sbjct: 677 GDLRGLNILDLSSNKLDG--RIPQA-MSALTMLTEIDLSNNNL 716
Score = 54.9 bits (133), Expect = 7e-08
Identities = 36/167 (21%), Positives = 67/167 (40%), Gaps = 8/167 (4%)
Query: 41 SLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRI--IEPGVFDPLTSLEYLMLNRC 98
+ ++ + N + +GN L I + L++ +
Sbjct: 559 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 618
Query: 99 NLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGIS-NLPDNV 157
+ FDN + L++S N L +I +G++ L L+L + IS ++PD
Sbjct: 619 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE--IGSMPYLFILNLGHNDISGSIPDE- 675
Query: 158 FANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPL 204
+ L L+L+ N+L + + L L +DLSN +L GP+
Sbjct: 676 VGDLRGLNILDLSSNKLDG-RIPQAMS-ALTMLTEIDLSNNNLSGPI 720
Score = 49.1 bits (118), Expect = 5e-06
Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 9/111 (8%)
Query: 417 PDLEELRLSGNPLHVLPTGNLLP-PQLSRLRSLDLSRCKI-DYLPPNV-FNNTRNITSLN 473
LE L LS + + G++ + L SLDLSR + + + + LN
Sbjct: 77 TGLESLFLSNSHI----NGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLN 132
Query: 474 LANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIK 524
+++N L ++S L LE LDLS N+++ + + +K
Sbjct: 133 VSSNTLDFPGKVSGGLK--LNSLEVLDLSANSISGANVVGWVLSDGCGELK 181
Score = 35.7 bits (83), Expect = 0.060
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 465 NTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISP 511
+TS++L++ L++ L L LESL LSN+++
Sbjct: 48 RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS 94
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 146 bits (371), Expect = 9e-40
Identities = 57/214 (26%), Positives = 98/214 (45%), Gaps = 10/214 (4%)
Query: 64 TTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNK 123
+ LDLS NPLR + F L+ L L+RC + I A+ +L+HL TL L+ N
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 124 LKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTL 183
++S + L L L ++ +++L + + L+ LN+A N + +
Sbjct: 88 IQS-LALG-AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145
Query: 184 GQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLR----TLYLSGNPLSAADLSVALKPLTK 239
NL +L+ LDLS+ ++ + ++ +L LS NP++ + +
Sbjct: 146 -SNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMNF--IQPGAFKEIR 201
Query: 240 LHRLSLRNCGLSRLPANTFHRFTCLQELDISHNP 273
L L+L L +P F R T LQ++ + NP
Sbjct: 202 LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235
Score = 135 bits (341), Expect = 1e-35
Identities = 57/261 (21%), Positives = 97/261 (37%), Gaps = 45/261 (17%)
Query: 287 SLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGL 346
S ++LD+ ++ L+ + +F L+ L LS +++T+E G +Q+L+HLS L L +
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88
Query: 347 TRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILN 406
L F L++L L L + L
Sbjct: 89 QSLALGAFSG---LSSLQKLVAVETNLASLENFP---------------IGHL------- 123
Query: 407 ETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNT 466
L+EL ++ N + L+ L LDLS KI +
Sbjct: 124 ----------KTLKELNVAHNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQSIYCTDLRVL 172
Query: 467 RNIT----SLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITS 522
+ SL+L+ N ++ +F+ + L+ L L N L + + ++
Sbjct: 173 HQMPLLNLSLDLSLNPMNFIQPGAFK----EIRLKELALDTNQLKSVPDGIFDRLTSLQK 228
Query: 523 IKLVGNPWKCDCNIAD-MWEW 542
I L NPW C C D + W
Sbjct: 229 IWLHTNPWDCSCPRIDYLSRW 249
Score = 129 bits (327), Expect = 8e-34
Identities = 50/207 (24%), Positives = 90/207 (43%), Gaps = 10/207 (4%)
Query: 23 NLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEP 81
+L+ NP++ + +F L L + C + I + +L+ L+ L L+GNP++ +
Sbjct: 34 DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93
Query: 82 GVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLD 141
G F L+SL+ L+ NL + +L LK L ++ N ++S NL L+
Sbjct: 94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS-FKLPEYFSNLTNLE 152
Query: 142 TLDLRQSGISNLPDNVFANNTWLR----NLNLAENELIDLDVATTLGQNLVHLDSLDLSN 197
LDL + I ++ + +L+L+ N + + L L L
Sbjct: 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKE---LALDT 209
Query: 198 CHLKGPLSEDAFVNATKLRTLYLSGNP 224
LK + + F T L+ ++L NP
Sbjct: 210 NQLKS-VPDGIFDRLTSLQKIWLHTNP 235
Score = 106 bits (266), Expect = 1e-25
Identities = 52/266 (19%), Positives = 92/266 (34%), Gaps = 60/266 (22%)
Query: 213 TKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHN 272
+ L LS NPL S + +L L L C + + + + L L ++ N
Sbjct: 28 FSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86
Query: 273 PLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLES-GLFQ 331
P+ S L SL+ L +NL + + +LK L ++ N +++ + F
Sbjct: 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146
Query: 332 NLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQ 391
NLT+ LE L LS N + + +
Sbjct: 147 NLTN---------------------------LEHLDLSSNKIQSIYCTD----------- 168
Query: 392 IWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLS 451
L + +LN L LS NP++ + G + L+ L L
Sbjct: 169 ----LRVLHQMPLLN-------------LSLDLSLNPMNFIQPGAFKEIR---LKELALD 208
Query: 452 RCKIDYLPPNVFNNTRNITSLNLANN 477
++ +P +F+ ++ + L N
Sbjct: 209 TNQLKSVPDGIFDRLTSLQKIWLHTN 234
Score = 65.8 bits (161), Expect = 5e-12
Identities = 30/122 (24%), Positives = 48/122 (39%), Gaps = 17/122 (13%)
Query: 417 PDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLAN 476
+ L LS NPL L + + L+ LDLSRC+I + + + ++++L L
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85
Query: 477 NNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTV-----------LRHNRAITSIKL 525
N + + +F L L+ L NL + + HN I S KL
Sbjct: 86 NPIQSLALGAF---SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKL 141
Query: 526 VG 527
Sbjct: 142 PE 143
Score = 35.3 bits (82), Expect = 0.042
Identities = 14/58 (24%), Positives = 26/58 (44%)
Query: 20 ITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLR 77
++++L+ NP+ ++ L L + L + F LT+L K+ L NP
Sbjct: 180 LSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 147 bits (374), Expect = 2e-38
Identities = 88/492 (17%), Positives = 151/492 (30%), Gaps = 86/492 (17%)
Query: 42 LLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLT 101
+ + L TL LD + + + + LT L L+ N+T
Sbjct: 20 FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNNIT 77
Query: 102 YISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANN 161
+ S +L L NKL + L + L KL L+ + ++ L + N
Sbjct: 78 TLDLS---QNTNLTYLACDSNKLTN-----LDVTPLTKLTYLNCDTNKLTKLD---VSQN 126
Query: 162 TWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLS 221
L LN A N L ++DV+ + L LD +++ T+L TL S
Sbjct: 127 PLLTYLNCARNTLTEIDVS-----HNTQLTELDCHLNKK---ITKLDVTPQTQLTTLDCS 178
Query: 222 GNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTAL 281
N ++ D+S L+RL+ +++L ++ L LD S N L
Sbjct: 179 FNKITELDVS----QNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLT---EID 228
Query: 282 LSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLEL 341
++PL L + D + L + ST + L TL L ++ L +
Sbjct: 229 VTPLTQLTYFDCSVNPLTELDVSTL---SKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGC 285
Query: 342 NNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVI 401
+ E N L L + L S
Sbjct: 286 RK-----IKELDVTHN---TQLYLLDCQAAGITELDLSQ--------------------- 316
Query: 402 LFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPN 461
P L L L+ L L + ++L+SL I
Sbjct: 317 --------------NPKLVYLYLNNTELTELDVSHN-----TKLKSLSCVNAHIQDFSS- 356
Query: 462 VFNNTRNITSLNLANNNLSMTSELSFQF--LDVLLELESLDLSNNNLTHISPTVLRHNRA 519
+ + A + + L + + + LD N + +++A
Sbjct: 357 -VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQA 415
Query: 520 ITSIKLVGNPWK 531
+I
Sbjct: 416 TNTITWENLSTD 427
Score = 139 bits (352), Expect = 1e-35
Identities = 74/443 (16%), Positives = 135/443 (30%), Gaps = 69/443 (15%)
Query: 86 PLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDL 145
P + + + + + L L +L+ + + + L L L
Sbjct: 16 PDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG----IEKLTGLTKLIC 71
Query: 146 RQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLS 205
+ I+ L + NT L L N+L +LDV L L L+ L+
Sbjct: 72 TSNNITTLD---LSQNTNLTYLACDSNKLTNLDV-----TPLTKLTYLNCDTNK----LT 119
Query: 206 EDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQ 265
+ L L + N L+ D+S T+L L T L
Sbjct: 120 KLDVSQNPLLTYLNCARNTLTEIDVS----HNTQLTELDCHLNKKITKL--DVTPQTQLT 173
Query: 266 ELDISHNPLIDAFTAL-LSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLET 324
LD S N + T L +S + L L+ +N+ ++ + L L S NKL
Sbjct: 174 TLDCSFNKI----TELDVSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTE 226
Query: 325 LESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYS 384
++ LT L+ + + LT L+ + L L L + +
Sbjct: 227 ID---VTPLTQLTYFDCSVNPLTELDVSTL------SKLTTLHCIQTDLLEIDLT----- 272
Query: 385 MRTIPTQIWKNFDFLVILFILNETVFHENYTY--PDLEELRLSGNPLHVLPTGNLLPPQL 442
+ L+ E L L + L
Sbjct: 273 ----------HNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQ-----N 317
Query: 443 SRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLS 502
+L L L+ ++ L ++ + SL+ N ++ S + + L + +
Sbjct: 318 PKLVYLYLNNTELTELD---VSHNTKLKSLSCVNAHIQDFSSVGK-----IPALNNNFEA 369
Query: 503 NNNLTHISPTVLRHNRAITSIKL 525
+ L +N ++
Sbjct: 370 EGQTITMPKETLTNNSLTIAVSP 392
Score = 132 bits (333), Expect = 4e-33
Identities = 88/476 (18%), Positives = 149/476 (31%), Gaps = 91/476 (19%)
Query: 15 DNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGN 74
L +++ + + I + G L L ++ ++ TNLT L N
Sbjct: 40 QLATLTSLDCHNSSITDMTG-IEKLTGLTKLICTSNNITTLDLSQNTNLTY---LACDSN 95
Query: 75 PLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVL 134
L ++ PLT L YL + LT + S L L ++N L + +
Sbjct: 96 KLTNLD---VTPLTKLTYLNCDTNKLTKLDVS---QNPLLTYLNCARNTLTE-----IDV 144
Query: 135 GNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLD 194
+ +L LD + D T L L+ + N++ +LDV+ L+ L+
Sbjct: 145 SHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITELDVS-----QNKLLNRLN 197
Query: 195 LSNCHLKG-PLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRL 253
++ L+ +L L S N L+ D++ PLT+L L+ L
Sbjct: 198 CDTNNITKLDLN-----QNIQLTFLDCSSNKLTEIDVT----PLTQLTYFDCSVNPLTEL 248
Query: 254 PANTFHRFTCLQELDISHNPLIDAFTAL-LSPLESLEHLDMGYSNLQRISRSTFLKMTSL 312
+T + L L L + L+ L + ++I T L
Sbjct: 249 DVST---LSKLTTLHCIQTDL----LEIDLTHNTQLIYFQA--EGCRKIKELDVTHNTQL 299
Query: 313 KTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNP 372
L + L+ L L LNN LT L+ + L+ L
Sbjct: 300 YLLDCQAAGITELD---LSQNPKLVYLYLNNTELTELDVSHN------TKLKSLSCVNAH 350
Query: 373 LHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVL 432
+ K P L + +
Sbjct: 351 IQDFSSVGK----------------------------------IPALNNNFEAEGQTITM 376
Query: 433 PTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNN------TRNITSLNLANNNLSMT 482
P L L+ S DL + + + T IT NL+ +N ++T
Sbjct: 377 PKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVT 432
Score = 108 bits (272), Expect = 2e-25
Identities = 72/428 (16%), Positives = 117/428 (27%), Gaps = 102/428 (23%)
Query: 109 DNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLN 168
DN + + L L +LD S I+++ T L L
Sbjct: 18 DNFASEVAAAFEMQATDT-----ISEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLI 70
Query: 169 LAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAA 228
N + LD++ +L L + L + TKL L N L+
Sbjct: 71 CTSNNITTLDLS-----QNTNLTYLACDSNKL----TNLDVTPLTKLTYLNCDTNKLTKL 121
Query: 229 DLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESL 288
D+S L L+ L+ + T L ELD N I
Sbjct: 122 DVS----QNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITK----------- 163
Query: 289 EHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTR 348
T L TL S NK+ L+ L+ L + +T+
Sbjct: 164 ---------------LDVTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITK 205
Query: 349 LNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFI---- 404
L+ L L S N L + + L
Sbjct: 206 LDLNQN------IQLTFLDCSSNKLTEIDVT---------------PLTQLTYFDCSVNP 244
Query: 405 ---LNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPN 461
L+ + L L L + + ++L C+ +
Sbjct: 245 LTELDVSTL------SKLTTLHCIQTDLLEIDLTH-----NTQLIYFQAEGCRK--IKEL 291
Query: 462 VFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAIT 521
+ + L+ + +EL +L L L+N LT + + HN +
Sbjct: 292 DVTHNTQLYLLDCQAAGI---TELDLSQ---NPKLVYLYLNNTELTELD---VSHNTKLK 342
Query: 522 SIKLVGNP 529
S+ V
Sbjct: 343 SLSCVNAH 350
Score = 59.3 bits (144), Expect = 2e-09
Identities = 32/229 (13%), Positives = 71/229 (31%), Gaps = 43/229 (18%)
Query: 304 STFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDL 363
+ + + + + + +++ ++ + L L+ L+ +N +T + L
Sbjct: 12 NDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTG-----L 66
Query: 364 EELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFI----LNETVFHENYTYPDL 419
+L + N + L S L L L L
Sbjct: 67 TKLICTSNNITTLDLS---------------QNTNLTYLACDSNKLTNLDVTPL---TKL 108
Query: 420 EELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNL 479
L N L L L L+ +R + + ++ +T L+ N
Sbjct: 109 TYLNCDTNKLTKLDVSQ-----NPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKK 160
Query: 480 SMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGN 528
+++ +L +LD S N +T + + N+ + + N
Sbjct: 161 ITKLDVTP-----QTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTN 201
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 140 bits (354), Expect = 6e-36
Identities = 82/469 (17%), Positives = 156/469 (33%), Gaps = 81/469 (17%)
Query: 12 RNLDNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDL 71
R+ + + LN + + L L +L+++ P+ +L +L +
Sbjct: 66 RDCLDRQAHELELNNLGLSSLPELP---PHLESLVASCNSLTEL-PELPQSLKSLLVDNN 121
Query: 72 SGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWT 131
+ L + LEYL ++ L + N + LK +++ N LK
Sbjct: 122 NLKALSDL-------PPLLEYLGVSNNQLEKLPE--LQNSSFLKIIDVDNNSLKK----- 167
Query: 132 LVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLD 191
+ L+ + + + LP+ N +L + N L L + L+
Sbjct: 168 -LPDLPPSLEFIAAGNNQLEELPE--LQNLPFLTAIYADNNSL------KKLPDLPLSLE 218
Query: 192 SLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLS 251
S+ N L+ N L T+Y N L L L++R+ L+
Sbjct: 219 SIVAGNNILEEL---PELQNLPFLTTIYADNNLLKTLPDL-----PPSLEALNVRDNYLT 270
Query: 252 RLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTS 311
LP L LD+S N + L +L +L+ + ++ + S
Sbjct: 271 DLPEL----PQSLTFLDVSENIF----SGLSELPPNLYYLNASSNEIRSLCDL----PPS 318
Query: 312 LKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGN 371
L+ L +S NKL L + L L + L + E + L++L + N
Sbjct: 319 LEELNVSNNKLIELPA----LPPRLERLIASFNHLAEVPELPQN-------LKQLHVEYN 367
Query: 372 PLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHV 431
PL PD + ++ L + E + L++L + NPL
Sbjct: 368 PLREFPDIPES----------VEDLRMNSHLAEVPELPQN-------LKQLHVETNPLRE 410
Query: 432 LPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLS 480
P + L ++ ++ T + +++
Sbjct: 411 FP------DIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453
Score = 135 bits (343), Expect = 2e-34
Identities = 88/469 (18%), Positives = 148/469 (31%), Gaps = 93/469 (19%)
Query: 62 NLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQ 121
+ T L + + L + + + S +P + L
Sbjct: 9 SNTFLQEPLRHSSNLTEMPVEAEN-VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67
Query: 122 NKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVAT 181
+ L+L G+S+LP+ L +L + N L +L
Sbjct: 68 CLDRQ-------------AHELELNNLGLSSLPELP----PHLESLVASCNSLTELP--- 107
Query: 182 TLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLH 241
L Q+L L + + L L L +S N L L+ + L
Sbjct: 108 ELPQSLKSLLVDNNNLKALSDLPP--------LLEYLGVSNNQLEKLP---ELQNSSFLK 156
Query: 242 RLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTAL--LSPLESLEHLDMGYSNLQ 299
+ + N L +LP L+ + +N L L L L L + ++L+
Sbjct: 157 IIDVDNNSLKKLPDL----PPSLEFIAAGNNQL----EELPELQNLPFLTAIYADNNSLK 208
Query: 300 RISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYT 359
++ SL++++ N LE L QNL L+ + +N L L +
Sbjct: 209 KLPDL----PLSLESIVAGNNILEELPE--LQNLPFLTTIYADNNLLKTLPDLP------ 256
Query: 360 YPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDL 419
P LE L + N L LP+ + L L + + P+L
Sbjct: 257 -PSLEALNVRDNYLTDLPELPQS----------------LTFLDVSENIFSGLSELPPNL 299
Query: 420 EELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNL 479
L S N + L L L++S K+ LP + L + N+L
Sbjct: 300 YYLNASSNEI------RSLCDLPPSLEELNVSNNKLIELPALP----PRLERLIASFNHL 349
Query: 480 SMTSELSFQFLDVLLELESLDLSNNNLTHISP-----TVLRHNRAITSI 523
+ EL L+ L + N L LR N + +
Sbjct: 350 AEVPEL-------PQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEV 391
Score = 135 bits (341), Expect = 4e-34
Identities = 91/490 (18%), Positives = 145/490 (29%), Gaps = 105/490 (21%)
Query: 40 RSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVF-------------DP 86
L L+++ + N+ + + + + P
Sbjct: 11 TFLQEPLRHSSNLTEMPVEAE-NVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL 69
Query: 87 LTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLR 146
L LN L+ + HL++L S N L + +L L +
Sbjct: 70 DRQAHELELNNLGLSSLPEL----PPHLESLVASCNSLTE---LPELPQSLKSLLVDNNN 122
Query: 147 QSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSE 206
+S+LP L L ++ N+L L QN L +D+ N LK
Sbjct: 123 LKALSDLPPL-------LEYLGVSNNQLEKLPE----LQNSSFLKIIDVDNNSLK----- 166
Query: 207 DAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQE 266
L + N L L+ L L + N L +LP L+
Sbjct: 167 KLPDLPPSLEFIAAGNNQLEELP---ELQNLPFLTAIYADNNSLKKLPDL----PLSLES 219
Query: 267 LDISHNPLIDAFTAL--LSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLET 324
+ +N L L L L L + + L+ + SL+ L + N L
Sbjct: 220 IVAGNNIL----EELPELQNLPFLTTIYADNNLLKTLPDL----PPSLEALNVRDNYLTD 271
Query: 325 LESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYS 384
L L Q+LT L V E GL+ L P+L L S N + L D
Sbjct: 272 LPE-LPQSLTFLDVSENIFSGLSELP----------PNLYYLNASSNEIRSLCDLPPS-- 318
Query: 385 MRTIPTQIWKNFDFLVILFILN---ETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQ 441
L L + N + P LE L S N L +P
Sbjct: 319 --------------LEELNVSNNKLIELPALP---PRLERLIASFNHLAEVP------EL 355
Query: 442 LSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDL 501
L+ L + + P + + L + ++ + L+ L +
Sbjct: 356 PQNLKQLHVEYNPLREFPDIPES----VEDLRMNSHLAEVPELPQ--------NLKQLHV 403
Query: 502 SNNNLTHISP 511
N L
Sbjct: 404 ETNPLREFPD 413
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 133 bits (335), Expect = 1e-32
Identities = 84/392 (21%), Positives = 138/392 (35%), Gaps = 91/392 (23%)
Query: 139 KLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNC 198
L++ +SG++ LPD + A+ + L + +N L T+L L +L++S
Sbjct: 41 GNAVLNVGESGLTTLPDCLPAH---ITTLVIPDNNL------TSLPALPPELRTLEVSGN 91
Query: 199 HLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTF 258
L L +L L A + L +L + L+ LP
Sbjct: 92 QLTS-LPV-LPPGLLELSIFSNPLTHLPAL--------PSGLCKLWIFGNQLTSLPVL-- 139
Query: 259 HRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILS 318
LQEL +S N L +L + L L + L + + L+ L +S
Sbjct: 140 --PPGLQELSVSDNQL----ASLPALPSELCKLWAYNNQLTSLPML----PSGLQELSVS 189
Query: 319 GNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPD 378
N+L +L + + L L N LT L L+EL +SGN L LP
Sbjct: 190 DNQLASLPTLP----SELYKLWAYNNRLTSLPALP-------SGLKELIVSGNRLTSLPV 238
Query: 379 STKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLL 438
+ L+EL +SGN L LP
Sbjct: 239 LPSE------------------------------------LKELMVSGNRLTSLP----- 257
Query: 439 PPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELES 498
S L SL + R ++ LP ++ + + + T++NL N LS + + + E+ S
Sbjct: 258 -MLPSGLLSLSVYRNQLTRLPESLIHLS-SETTVNLEGNPLSERTLQALR------EITS 309
Query: 499 LDLSNNNLTHISPTVLRHNRAITSIKLVGNPW 530
+ + R ++ L W
Sbjct: 310 APGYSGPIIRFDMAGASAPRETRALHLAAADW 341
Score = 115 bits (289), Expect = 5e-27
Identities = 81/443 (18%), Positives = 132/443 (29%), Gaps = 117/443 (26%)
Query: 63 LTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQN 122
L++ + L + + + L++ NLT + L+TLE+S N
Sbjct: 39 NNGNAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTSLPAL----PPELRTLEVSGN 91
Query: 123 KLKSHIDWTL--VLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVA 180
+L S L + L +L + + LP L L + N+L
Sbjct: 92 QLTS-----LPVLPPGLLELSIFSNPLTHLPALPSG-------LCKLWIFGNQL------ 133
Query: 181 TTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKL 240
T+L L L +S+ L + ++L
Sbjct: 134 TSLPVLPPGLQELSVSDNQLASLPAL------------------------------PSEL 163
Query: 241 HRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQR 300
+L N L+ LP + LQEL +S N L +L + L L + L
Sbjct: 164 CKLWAYNNQLTSLPML----PSGLQELSVSDNQL----ASLPTLPSELYKLWAYNNRLTS 215
Query: 301 ISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTY 360
+ + LK LI+SGN+L +L + L L ++ LT L
Sbjct: 216 LPAL----PSGLKELIVSGNRLTSLPV----LPSELKELMVSGNRLTSLPMLP------- 260
Query: 361 PDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLE 420
L L + N L LP+S L L
Sbjct: 261 SGLLSLSVYRNQLTRLPES----------------------LIHL-----------SSET 287
Query: 421 ELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLS 480
+ L GNPL +++ + D + TR + + L
Sbjct: 288 TVNLEGNPLSERT--LQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAA--ADWLV 343
Query: 481 MTSELSFQFLDVLLELESLDLSN 503
E D D ++
Sbjct: 344 PAREGEPAPADRWHMFGQEDNAD 366
Score = 113 bits (283), Expect = 4e-26
Identities = 65/349 (18%), Positives = 111/349 (31%), Gaps = 58/349 (16%)
Query: 40 RSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCN 99
L + E L+ + ++T L + N L + L L ++
Sbjct: 40 NGNAVLNVGESGLTTLPDCLPAHIT---TLVIPDNNLTSLPAL----PPELRTLEVSGNQ 92
Query: 100 LTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFA 159
LT + P L L L + + L KL + + + LP
Sbjct: 93 LTSL-PVLPPGLLELSIFSNPLTHLPA------LPSGLCKLWIFGNQLTSLPVLPPG--- 142
Query: 160 NNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLY 219
L+ L++++N+L +L L L N L L + L+ L
Sbjct: 143 ----LQELSVSDNQL------ASLPALPSELCKLWAYNNQLTS-LPM----LPSGLQELS 187
Query: 220 LSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLID--- 276
+S N L++ L ++L++L N L+ LPA + L+EL +S N L
Sbjct: 188 VSDNQLAS--LPTLP---SELYKLWAYNNRLTSLPAL----PSGLKELIVSGNRLTSLPV 238
Query: 277 -------------AFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLE 323
T+L L L + + L R+ S + ++S T+ L GN L
Sbjct: 239 LPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPES-LIHLSSETTVNLEGNPLS 297
Query: 324 TLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNP 372
+ +T + E L
Sbjct: 298 ERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAR 346
Score = 38.7 bits (90), Expect = 0.007
Identities = 28/163 (17%), Positives = 51/163 (31%), Gaps = 10/163 (6%)
Query: 41 SLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNL 100
LL L + L+++ P+ +L++ ++L GNPL +TS
Sbjct: 262 GLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRF 320
Query: 101 TYISPSA---FDNLNHLKTLELSQNK--LKSHIDWTLVLGNLGKLDTLDLRQSGISNLPD 155
SA L+ L + + D + G D L +S +
Sbjct: 321 DMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLSETEN 380
Query: 156 NVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNC 198
+ + + L L L N + + S+C
Sbjct: 381 FIKDAGFKAQISSW----LAQLAEDEALRANTFAMATEATSSC 419
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 121 bits (306), Expect = 5e-31
Identities = 73/234 (31%), Positives = 97/234 (41%), Gaps = 41/234 (17%)
Query: 310 TSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLS 369
K L L NKL +L S F LT L +L LN+ L L +F E +LE L ++
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL---KNLETLWVT 93
Query: 370 GNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPL 429
N L LP FD LV +L ELRL N L
Sbjct: 94 DNKLQALPIGV---------------FDQLV-----------------NLAELRLDRNQL 121
Query: 430 HVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQF 489
LP + L++L L L ++ LP VF+ ++ L L NN L E +F
Sbjct: 122 KSLPPR--VFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAF-- 177
Query: 490 LDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCN-IADMWEW 542
D L EL++L L NN L + + ++L NPW C CN I M +W
Sbjct: 178 -DKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKW 230
Score = 118 bits (298), Expect = 5e-30
Identities = 62/184 (33%), Positives = 86/184 (46%), Gaps = 11/184 (5%)
Query: 44 YLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYI 103
L +Q LS + + F LT L L L+ N L+ + G+F L +LE L + L +
Sbjct: 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL 100
Query: 104 SPSAFDNLNHLKTLELSQNKLKSHIDWTL---VLGNLGKLDTLDLRQSGISNLPDNVFAN 160
FD L +L L L +N+LKS L V +L KL L L + + +LP VF
Sbjct: 101 PIGVFDQLVNLAELRLDRNQLKS-----LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK 155
Query: 161 NTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYL 220
T L+ L L N+L + L L +L L N LK + E AF + KL+ L L
Sbjct: 156 LTSLKELRLYNNQLKRVP--EGAFDKLTELKTLKLDNNQLKR-VPEGAFDSLEKLKMLQL 212
Query: 221 SGNP 224
NP
Sbjct: 213 QENP 216
Score = 116 bits (292), Expect = 3e-29
Identities = 62/213 (29%), Positives = 82/213 (38%), Gaps = 36/213 (16%)
Query: 64 TTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNK 123
KLDL N L + F LT L L LN L + F L +L+TL ++ NK
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96
Query: 124 LKSHIDWTL---VLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVA 180
L++ L V L L L L ++ + +LP VF + T L L+L NEL
Sbjct: 97 LQA-----LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS---- 147
Query: 181 TTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKL 240
L + F T L+ L L N L K LT+L
Sbjct: 148 -----------------------LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDK-LTEL 183
Query: 241 HRLSLRNCGLSRLPANTFHRFTCLQELDISHNP 273
L L N L R+P F L+ L + NP
Sbjct: 184 KTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216
Score = 108 bits (271), Expect = 2e-26
Identities = 50/155 (32%), Positives = 72/155 (46%), Gaps = 3/155 (1%)
Query: 19 LITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLR 77
L + LN N +Q + G F ++L L++ + L + F L L +L L N L+
Sbjct: 63 LRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK 122
Query: 78 IIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNL 137
+ P VFD LT L YL L L + FD L LK L L N+LK + L
Sbjct: 123 SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEG--AFDKL 180
Query: 138 GKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAEN 172
+L TL L + + +P+ F + L+ L L EN
Sbjct: 181 TELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 91.2 bits (227), Expect = 1e-20
Identities = 61/224 (27%), Positives = 96/224 (42%), Gaps = 44/224 (19%)
Query: 242 RLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRI 301
+L L++ LS LP+ FHR T L+ L ++ N L + L++LE L + + LQ +
Sbjct: 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL 100
Query: 302 SRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYP 361
F ++ +L L L N+L++L +F +LT L+ L L L L + VF +
Sbjct: 101 PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK---LT 157
Query: 362 DLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEE 421
L+ELRL N L +P+ FD L +L+
Sbjct: 158 SLKELRLYNNQLKRVPEGA---------------FDKL-----------------TELKT 185
Query: 422 LRLSGNPLHVLPTGNLLPPQLSRLRSLDL-------SRCKIDYL 458
L+L N L +P G L +L+ L L + I Y+
Sbjct: 186 LKLDNNQLKRVPEGAFDS--LEKLKMLQLQENPWDCTCNGIIYM 227
Score = 35.7 bits (83), Expect = 0.033
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 19 LITINLNANPIQPV-EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP 75
L + L N ++ V EGAF L L + L ++ F +L L L L NP
Sbjct: 159 LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 121 bits (305), Expect = 3e-30
Identities = 53/246 (21%), Positives = 83/246 (33%), Gaps = 43/246 (17%)
Query: 311 SLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLN-ETVFHENYTYPDLEELRLS 369
+ L S +L + L +L+L++ L+RL E +L L LS
Sbjct: 19 ASNILSCSKQQLPNVPQSLPSYTA---LLDLSHNNLSRLRAEWTPTR---LTNLHSLLLS 72
Query: 370 GNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPL 429
N L+ + F + L L LS N L
Sbjct: 73 HNHLNFISSEA---------------FVPVPNL-----------------RYLDLSSNHL 100
Query: 430 HVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQF 489
H L L L L L I + N F + + L L+ N +S +
Sbjct: 101 HTLDEFLF--SDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKD 158
Query: 490 LDVLLELESLDLSNNNLTHISPTVLRHNRAIT--SIKLVGNPWKCDCNIADMWEWATREK 547
+ L +L LDLS+N L + T L+ A + L NP +CDC + ++ +
Sbjct: 159 GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQ 218
Query: 548 GDIGVL 553
+
Sbjct: 219 LSSVMD 224
Score = 116 bits (292), Expect = 2e-28
Identities = 38/152 (25%), Positives = 66/152 (43%), Gaps = 3/152 (1%)
Query: 21 TINLNANPIQ--PVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRI 78
++L+ N + E +L L + L+ I+ + F + L LDLS N L
Sbjct: 43 LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT 102
Query: 79 IEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLV-LGNL 137
++ +F L +LE L+L ++ + +AF+++ L+ L LSQN++ + L
Sbjct: 103 LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKL 162
Query: 138 GKLDTLDLRQSGISNLPDNVFANNTWLRNLNL 169
KL LDL + + LP L
Sbjct: 163 PKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194
Score = 114 bits (287), Expect = 8e-28
Identities = 39/166 (23%), Positives = 63/166 (37%), Gaps = 24/166 (14%)
Query: 215 LRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPL 274
L LS N LS LT LH L L + L+ + + F L+ LD+S N
Sbjct: 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-- 98
Query: 275 IDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLT 334
+L + F + +L+ L+L N + ++ F+++
Sbjct: 99 ----------------------HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA 136
Query: 335 HLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDST 380
L L L+ ++R + + P L L LS N L LP +
Sbjct: 137 QLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTD 182
Score = 114 bits (287), Expect = 9e-28
Identities = 51/166 (30%), Positives = 76/166 (45%), Gaps = 7/166 (4%)
Query: 64 TTLNKLDLSGNPLRIIEPG-VFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQN 122
+ LDLS N L + LT+L L+L+ +L +IS AF + +L+ L+LS N
Sbjct: 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98
Query: 123 KLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVAT- 181
L + +D + +L L+ L L + I + N F + L+ L L++N++ V
Sbjct: 99 HLHT-LDE-FLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI 156
Query: 182 TLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKL--RTLYLSGNPL 225
G L L LDLS+ LK L LYL NPL
Sbjct: 157 KDGNKLPKLMLLDLSSNKLKK-LPLTDLQKLPAWVKNGLYLHNNPL 201
Score = 98.0 bits (244), Expect = 3e-22
Identities = 54/205 (26%), Positives = 74/205 (36%), Gaps = 33/205 (16%)
Query: 141 DTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHL 200
+ L + + N+P ++ + L+L+ N L L T L +L SL LS+ HL
Sbjct: 21 NILSCSKQQLPNVPQSLPSY---TALLDLSHNNLSRLRAEWTP-TRLTNLHSLLLSHNHL 76
Query: 201 KGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHR 260
+S +AFV LR L LS N L D L L L L N + + N F
Sbjct: 77 NF-ISSEAFVPVPNLRYLDLSSNHLHTLD-EFLFSDLQALEVLLLYNNHIVVVDRNAFED 134
Query: 261 FTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFL---KMTSLKTLIL 317
LQ+L +S N + R K+ L L L
Sbjct: 135 MAQLQKLYLSQN------------------------QISRFPVELIKDGNKLPKLMLLDL 170
Query: 318 SGNKLETLESGLFQNLTHLSVLELN 342
S NKL+ L Q L L
Sbjct: 171 SSNKLKKLPLTDLQKLPAWVKNGLY 195
Score = 93.4 bits (232), Expect = 1e-20
Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 8/166 (4%)
Query: 113 HLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAEN 172
+ L+LS N L S + L L +L L + ++ + F LR L+L+ N
Sbjct: 40 YTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98
Query: 173 ELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLS--AADL 230
L LD +L L+ L L N H+ + +AF + +L+ LYLS N +S +L
Sbjct: 99 HLHTLDEFLF--SDLQALEVLLLYNNHIVV-VDRNAFEDMAQLQKLYLSQNQISRFPVEL 155
Query: 231 SVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQE--LDISHNPL 274
L KL L L + L +LP + + L + +NPL
Sbjct: 156 IKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 119 bits (299), Expect = 2e-29
Identities = 56/270 (20%), Positives = 102/270 (37%), Gaps = 35/270 (12%)
Query: 17 PGLITINLNANPIQPV-EGAFLVARSLLYLYMQEC-TLSKINPQFFTNLTTLNKLDLS-G 73
I + ++ + +GAF L + + + L I F+NL L+++ +
Sbjct: 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89
Query: 74 NPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLV 133
N L I P F L +L+YL+++ + ++ + L++ N I+
Sbjct: 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 149
Query: 134 LGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSL 193
+G + L L ++GI + ++ F N T L LNL++N ++
Sbjct: 150 VGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEE---------------- 192
Query: 194 DLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRL 253
L D F A+ L +S + + S L+ L KL S N L +L
Sbjct: 193 ----------LPNDVFHGASGPVILDISRTRIHSLP-SYGLENLKKLRARSTYN--LKKL 239
Query: 254 PANTFHRFTCLQELDISHNPLIDAFTALLS 283
P + L E +++ AF
Sbjct: 240 PT--LEKLVALMEASLTYPSHCCAFANWRR 267
Score = 111 bits (279), Expect = 9e-27
Identities = 49/255 (19%), Positives = 90/255 (35%), Gaps = 22/255 (8%)
Query: 141 DTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHL 200
++S ++ +P ++ N L +L + L+ +++S +
Sbjct: 12 RVFLCQESKVTEIPSDLPRN---AIELRFVLTKLRVIQ-KGAF-SGFGDLEKIEISQNDV 66
Query: 201 KGPLSEDAFVNATKLRTLYLS-GNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFH 259
+ D F N KL + + N L + A + L L L + N G+ LP
Sbjct: 67 LEVIEADVFSNLPKLHEIRIEKANNLLYINPE-AFQNLPNLQYLLISNTGIKHLPDVHKI 125
Query: 260 RFTCLQELDISHNPLI-----DAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKT 314
LDI N I ++F L L + + +Q I S F +
Sbjct: 126 HSLQKVLLDIQDNINIHTIERNSFVGLSF---ESVILWLNKNGIQEIHNSAFNGTQLDEL 182
Query: 315 LILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELR-LSGNPL 373
+ N LE L + +F + +L+++ + L +L++LR S L
Sbjct: 183 NLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE------NLKKLRARSTYNL 236
Query: 374 HVLPDSTKQYSMRTI 388
LP K ++
Sbjct: 237 KKLPTLEKLVALMEA 251
Score = 105 bits (264), Expect = 8e-25
Identities = 47/272 (17%), Positives = 83/272 (30%), Gaps = 61/272 (22%)
Query: 287 SLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNK-LETLESGLFQNLTHLSVLELNNC- 344
+ L + L+ I + F L+ + +S N LE +E+ +F NL L + +
Sbjct: 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90
Query: 345 GLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFI 404
L +N F P+L+ L +S + LPD K +S
Sbjct: 91 NLLYINPEAFQN---LPNLQYLLISNTGIKHLPDVHKIHS-------------------- 127
Query: 405 LNETVFHENYTYPDLEELRLSGNP-LHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVF 463
L + N +H + N L L++ I + + F
Sbjct: 128 ------------LQKVLLDIQDNINIHTIER-NSFVGLSFESVILWLNKNGIQEIHNSAF 174
Query: 464 NNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRH------- 516
N T+ NNNL F LD+S + + L +
Sbjct: 175 NGTQLDELNLSDNNNLEELPNDVFHGAS---GPVILDISRTRIHSLPSYGLENLKKLRAR 231
Query: 517 ----NRAITSIKL--------VGNPWKCDCNI 536
+ + +++ + P C
Sbjct: 232 STYNLKKLPTLEKLVALMEASLTYPSHCCAFA 263
Score = 69.9 bits (171), Expect = 6e-13
Identities = 33/194 (17%), Positives = 64/194 (32%), Gaps = 18/194 (9%)
Query: 10 DRRNLDNPGLITINLNANP-IQPVE-GAFL-VARSLLYLYMQECTLSKINPQFFTNLTTL 66
D + + + +++ N I +E +F+ ++ + L++ + + +I+ F
Sbjct: 121 DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLD 180
Query: 67 NKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKS 126
N L + VF + L ++R + + +NL L+ K
Sbjct: 181 ELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKK-- 238
Query: 127 HIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRN---LNLAENELIDLDVATTL 183
L L L L + P + A W R L+ N+ I +
Sbjct: 239 ----LPTLEKLVALMEASL-----TY-PSHCCAFANWRRQISELHPICNKSILRQEVDYM 288
Query: 184 GQNLVHLDSLDLSN 197
Q SL N
Sbjct: 289 TQARGQRSSLAEDN 302
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 114 bits (288), Expect = 4e-28
Identities = 60/327 (18%), Positives = 102/327 (31%), Gaps = 33/327 (10%)
Query: 39 ARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRC 98
+ LY Q T + + D + + +
Sbjct: 11 SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETRTGR 66
Query: 99 NLTYISPSAFDNLNH--LKTLELSQNKLKSHIDWTL--VLGNLGKLDTLDLRQSGISNLP 154
L ++ LEL L L L + + +G+ LP
Sbjct: 67 ALKAT-ADLLEDATQPGRVALELRSVPLPQ-----FPDQAFRLSHLQHMTIDAAGLMELP 120
Query: 155 DNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNC--------HLKGPLSE 206
D L L LA N L L ++ +L L L + C L +
Sbjct: 121 DT-MQQFAGLETLTLARNPLRAL--PASIA-SLNRLRELSIRACPELTELPEPLASTDAS 176
Query: 207 DAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQE 266
L++L L + + L ++ L L L +RN LS L H L+E
Sbjct: 177 GEHQGLVNLQSLRLEWTGIRS--LPASIANLQNLKSLKIRNSPLSALG-PAIHHLPKLEE 233
Query: 267 LDISHNPLIDAFTALLSPLESLEHLDM-GYSNLQRISRSTFLKMTSLKTLILSGN-KLET 324
LD+ + + + L+ L + SNL + ++T L+ L L G L
Sbjct: 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD-IHRLTQLEKLDLRGCVNLSR 292
Query: 325 LESGLFQNLTHLSVLELNNCGLTRLNE 351
L S + L ++ + +L++
Sbjct: 293 LPSLI-AQLPANCIILVPPHLQAQLDQ 318
Score = 113 bits (286), Expect = 7e-28
Identities = 75/334 (22%), Positives = 121/334 (36%), Gaps = 32/334 (9%)
Query: 57 PQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKT 116
+ + L G+ V NR + S N N+ +
Sbjct: 5 HHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWH----SAWRQANSNNPQI 60
Query: 117 LELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELID 176
+ LK+ D L L+LR + PD F + L+++ + L++
Sbjct: 61 ETRTGRALKATAD-LLEDATQPGRVALELRSVPLPQFPDQAF-RLSHLQHMTIDAAGLME 118
Query: 177 LDVATTLGQNLVHLDSLDLSNCHLKG-PLSEDAFVNATKLRTLYLSGNP--------LSA 227
L T+ L++L L+ L+ P + + +LR L + P L++
Sbjct: 119 LP--DTMQ-QFAGLETLTLARNPLRALP---ASIASLNRLRELSIRACPELTELPEPLAS 172
Query: 228 ADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLES 287
D S + L L L L G+ LPA+ L+ L I ++PL A + L
Sbjct: 173 TDASGEHQGLVNLQSLRLEWTGIRSLPAS-IANLQNLKSLKIRNSPLS-ALGPAIHHLPK 230
Query: 288 LEHLDM-GYSNLQRISRSTFLKMTSLKTLILSG-NKLETLESGLFQNLTHLSVLELNNC- 344
LE LD+ G + L+ F LK LIL + L TL + LT L L+L C
Sbjct: 231 LEELDLRGCTALRNYP-PIFGGRAPLKRLILKDCSNLLTLPLDI-HRLTQLEKLDLRGCV 288
Query: 345 GLTRLNETVFHENYTYPDLEELRLSGNPLHVLPD 378
L+RL + P + + + L
Sbjct: 289 NLSRLPSLIAQ----LPANCIILVPPHLQAQLDQ 318
Score = 101 bits (255), Expect = 8e-24
Identities = 65/326 (19%), Positives = 112/326 (34%), Gaps = 32/326 (9%)
Query: 18 GLITINLN-ANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPL 76
G + + ++P + N +G L
Sbjct: 13 GRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETRTGRAL 68
Query: 77 RIIEPGVFDPLTS--LEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTL-- 132
+ + + T L L L P L+HL+ + + L L
Sbjct: 69 KAT-ADLLEDATQPGRVALELRSVPLPQF-PDQAFRLSHLQHMTIDAAGLME-----LPD 121
Query: 133 VLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAEN-------ELIDLDVATTLGQ 185
+ L+TL L ++ + LP + A+ LR L++ E + A+ Q
Sbjct: 122 TMQQFAGLETLTLARNPLRALPAS-IASLNRLRELSIRACPELTELPEPLASTDASGEHQ 180
Query: 186 NLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSL 245
LV+L SL L ++ + N L++L + +PLSA L A+ L KL L L
Sbjct: 181 GLVNLQSLRLEWTGIRSLPAS--IANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEELDL 236
Query: 246 RNC-GLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDM-GYSNLQRISR 303
R C L P F L+ L + + + L LE LD+ G NL R+
Sbjct: 237 RGCTALRNYP-PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295
Query: 304 STFLKMTSLKTLILSGNKLETLESGL 329
++ + +++ + L+
Sbjct: 296 L-IAQLPANCIILVPPHLQAQLDQHR 320
Score = 90.0 bits (224), Expect = 8e-20
Identities = 59/320 (18%), Positives = 101/320 (31%), Gaps = 60/320 (18%)
Query: 185 QNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLS 244
+ D + H + N+ + +G L A + L
Sbjct: 33 SQWQRHYNADRNRWHSAWRQA-----NSNNPQIETRTGRALKATADLLEDATQPGRVALE 87
Query: 245 LRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTAL---LSPLESLEHLDMGYSNLQRI 301
LR+ L + P + R + LQ + I L L + LE L + + L+ +
Sbjct: 88 LRSVPLPQFP-DQAFRLSHLQHMTIDAAGL----MELPDTMQQFAGLETLTLARNPLRAL 142
Query: 302 SRSTFLKMTSLKTLILSG-NKLETL--------ESGLFQNLTHLSVLELNNCGLTRLNET 352
S + L+ L + +L L SG Q L +L L L G+ L +
Sbjct: 143 PAS-IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS 201
Query: 353 VFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHE 412
+ + +L+ L++ +PL L + L L L+
Sbjct: 202 IAN----LQNLKSLKIRNSPLSALGPA----------------IHHLPKLEELDLRGCTA 241
Query: 413 NYTYPD-------LEELRLSG-NPLHVLPT--GNLLPPQLSRLRSLDLSRC-KIDYLPPN 461
YP L+ L L + L LP L++L LDL C + LP
Sbjct: 242 LRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR-----LTQLEKLDLRGCVNLSRLPSL 296
Query: 462 VFNNTRNITSLNLANNNLSM 481
+ + + +
Sbjct: 297 -IAQLPANCIILVPPHLQAQ 315
Score = 86.5 bits (215), Expect = 1e-18
Identities = 52/337 (15%), Positives = 96/337 (28%), Gaps = 65/337 (19%)
Query: 205 SEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCL 264
S +++ LY G+ L L++ R +
Sbjct: 4 SHHHHHHSSGRENLYFQGST----ALRPYHDVLSQWQRHYNADRNRWHSAWR-QANSNNP 58
Query: 265 QELDISHNPLIDAFTAL-LSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLE 323
Q + L L + L++ L + F +++ L+ + + L
Sbjct: 59 QIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAF-RLSHLQHMTIDAAGLM 117
Query: 324 TLESGLFQNLTHLSVLELNNCGLTRLNETVFH-ENYTYPDLEELRLSGNP-LHVLPDSTK 381
L + Q L L L L L ++ L EL + P L LP+
Sbjct: 118 ELPDTM-QQFAGLETLTLARNPLRALPASIASLNR-----LRELSIRACPELTELPEP-- 169
Query: 382 QYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPT--GNLLP 439
+ + E+ +L+ LRL + LP NL
Sbjct: 170 ----------------------LASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANL-- 205
Query: 440 PQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMT--SELSFQFLDVLLELE 497
L+SL + + L P ++ + L+L L+
Sbjct: 206 ---QNLKSLKIRNSPLSALGPA-IHHLPKLEELDLRGCTALRNYPPIFGG-----RAPLK 256
Query: 498 SLDLSN-NNLTHISPTV----------LRHNRAITSI 523
L L + +NL + + LR ++ +
Sbjct: 257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 116 bits (293), Expect = 7e-28
Identities = 91/417 (21%), Positives = 150/417 (35%), Gaps = 67/417 (16%)
Query: 16 NPGLITINLNANPIQPVEGAFLVA--RSLLYLYMQECTLSKINPQ----FFTNLTTLNKL 69
+ + ++++ + A L+ + + + +C L++ + L +L
Sbjct: 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61
Query: 70 DLSGNPL-----RIIEPGVFDPLTSLEYLMLNRCNLT-----YISPSAFDNLNHLKTLEL 119
+L N L + G+ P ++ L L C LT +S S L L+ L L
Sbjct: 62 NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS-STLRTLPTLQELHL 120
Query: 120 SQNKLK----SHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFA----NNTWLRNLNLAE 171
S N L + +L +L+ L L +S A + L ++
Sbjct: 121 SDNLLGDAGLQLLC-EGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN 179
Query: 172 NELIDLDV---ATTLGQNLVHLDSLDLSNCHLK----GPLSEDAFVNATKLRTLYLSGNP 224
N++ + V L + L++L L +C + L + LR L L N
Sbjct: 180 NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG-IVASKASLRELALGSNK 238
Query: 225 LS---AADLSVAL-KPLTKLHRLSLRNCGLS----RLPANTFHRFTCLQELDISHNPLID 276
L A+L L P ++L L + CG++ L+EL ++ N L D
Sbjct: 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 298
Query: 277 A-----FTALLSPLESLEHLDMGYSNLQRISRSTFLKM----TSLKTLILSGNKLE---- 323
LL P LE L + + S F + L L +S N+LE
Sbjct: 299 EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV 358
Query: 324 -TLESGLFQNLTHLSVLELNNCGLTRLNE------TVFHENYTYPDLEELRLSGNPL 373
L GL Q + L VL L +C ++ + N L EL LS N L
Sbjct: 359 RELCQGLGQPGSVLRVLWLADCDVS--DSSCSSLAATLLAN---HSLRELDLSNNCL 410
Score = 115 bits (291), Expect = 1e-27
Identities = 94/390 (24%), Positives = 146/390 (37%), Gaps = 62/390 (15%)
Query: 16 NPGLITINLNANPIQPVEGAFLVAR-------SLLYLYMQECTLSKINPQF----FTNLT 64
NP L +NL +N + G V + + L +Q C L+ L
Sbjct: 55 NPALAELNLRSNELGD-VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLP 113
Query: 65 TLNKLDLSGNPL-----RIIEPGVFDPLTSLEYLMLNRCNLT-----YISPSAFDNLNHL 114
TL +L LS N L +++ G+ DP LE L L C+L+ ++ S
Sbjct: 114 TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA-SVLRAKPDF 172
Query: 115 KTLELSQNKLKSHIDWTLVLG---NLGKLDTLDLRQSGISNLP----DNVFANNTWLRNL 167
K L +S N + L G + +L+ L L G+++ + A+ LR L
Sbjct: 173 KELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLREL 232
Query: 168 NLAENELIDLDV---ATTLGQNLVHLDSLDLSNCHLKGP----LSEDAFVNATKLRTLYL 220
L N+L D+ + L L +L + C + L L+ L L
Sbjct: 233 ALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR-VLRAKESLKELSL 291
Query: 221 SGNPLS---AADLSVALK-PLTKLHRLSLRNCGLSRLPANTF----HRFTCLQELDISHN 272
+GN L A L L P +L L +++C + + F + L EL IS+N
Sbjct: 292 AGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN 351
Query: 273 PLIDA-----FTALLSPLESLEHLDMGYSNL-----QRISRSTFLKMTSLKTLILSGNKL 322
L DA L P L L + ++ ++ +T L SL+ L LS N L
Sbjct: 352 RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA-ATLLANHSLRELDLSNNCL 410
Query: 323 ET-----LESGLFQNLTHLSVLELNNCGLT 347
L + Q L L L + +
Sbjct: 411 GDAGILQLVESVRQPGCLLEQLVLYDIYWS 440
Score = 109 bits (274), Expect = 2e-25
Identities = 94/459 (20%), Positives = 150/459 (32%), Gaps = 99/459 (21%)
Query: 114 LKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLP----DNVFANNTWLRNLNL 169
+++L++ +L S W +L L + + L G++ + N L LNL
Sbjct: 5 IQSLDIQCEEL-SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63
Query: 170 AENELIDLDV---ATTLGQNLVHLDSLDLSNCHLK----GPLSEDAFVNATKLRTLYLSG 222
NEL D+ V L + L L NC L G LS L+ L+LS
Sbjct: 64 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS-TLRTLPTLQELHLSD 122
Query: 223 NPLS---AADLSVALK-PLTKLHRLSLRNCGLS----RLPANTFHRFTCLQELDISHNPL 274
N L L L P +L +L L C LS A+ +EL +S+N +
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182
Query: 275 IDA-----FTALLSPLESLEHLDMGYSNL-----QRISRSTFLKMTSLKTLILSGNKLET 324
+A L LE L + + + + SL+ L L NKL
Sbjct: 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC-GIVASKASLRELALGSNKLG- 240
Query: 325 LESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYS 384
+ G+ L + H + L L + +
Sbjct: 241 ------------------DVGMAELCPGLLHPSSR---LRTLWIWECGITA--------- 270
Query: 385 MRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLH---VLPTGNLLPPQ 441
K L + E+ L+EL L+GN L L
Sbjct: 271 ---------KGCGDLCRVLRAKES----------LKELSLAGNELGDEGARLLCETLLEP 311
Query: 442 LSRLRSLDLSRCKID-----YLPPNVFNNTRNITSLNLANNNLSMT--SELSFQFLDVLL 494
+L SL + C + +V R + L ++NN L EL
Sbjct: 312 GCQLESLWVKSCSFTAACCSHFS-SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGS 370
Query: 495 ELESLDLSNNNLT-----HISPTVLRHNRAITSIKLVGN 528
L L L++ +++ ++ L N ++ + L N
Sbjct: 371 VLRVLWLADCDVSDSSCSSLA-ATLLANHSLRELDLSNN 408
Score = 100 bits (250), Expect = 2e-22
Identities = 83/359 (23%), Positives = 137/359 (38%), Gaps = 53/359 (14%)
Query: 213 TKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLS----RLPANTFHRFTCLQELD 268
+++L + LS A + L L + + L +CGL+ + ++ L EL+
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62
Query: 269 ISHNPLIDA-----FTALLSPLESLEHLDMGYSNL-----QRISRSTFLKMTSLKTLILS 318
+ N L D L +P ++ L + L +S ST + +L+ L LS
Sbjct: 63 LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS-STLRTLPTLQELHLS 121
Query: 319 GNKL-----ETLESGLFQNLTHLSVLELNNCGLT-RLNETVFHENYTYPDLEELRLSGNP 372
N L + L GL L L+L C L+ E + PD +EL +S N
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181
Query: 373 LHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTY--------PDLEELRL 424
+ + +R + + + L L + + V +N L EL L
Sbjct: 182 I-------NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELAL 234
Query: 425 SGNPLH---VLPTGNLLPPQLSRLRSLDLSRCKID-----YLPPNVFNNTRNITSLNLAN 476
N L + L SRLR+L + C I L + ++ L+LA
Sbjct: 235 GSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE-SLKELSLAG 293
Query: 477 NNLSMT--SELSFQFLDVLLELESLDLSNNNLT-----HISPTVLRHNRAITSIKLVGN 528
N L L L+ +LESL + + + T H S +VL NR + +++ N
Sbjct: 294 NELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS-SVLAQNRFLLELQISNN 351
Score = 69.2 bits (170), Expect = 1e-12
Identities = 57/260 (21%), Positives = 88/260 (33%), Gaps = 55/260 (21%)
Query: 16 NPGLITINLNANPIQPVEGAFLVA-------RSLLYLYMQECTLSKINPQFFT----NLT 64
L + L +N + G + L L++ EC ++
Sbjct: 226 KASLRELALGSNKLGD-VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE 284
Query: 65 TLNKLDLSGNPL-----RIIEPGVFDPLTSLEYLMLNRCNLT-----YISPSAFDNLNHL 114
+L +L L+GN L R++ + +P LE L + C+ T + S S L
Sbjct: 285 SLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS-SVLAQNRFL 343
Query: 115 KTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENEL 174
L++S N+L+ +G+ L + + LR L LA+ ++
Sbjct: 344 LELQISNNRLED---------------------AGVRELCQGLGQPGSVLRVLWLADCDV 382
Query: 175 ID---LDVATTLGQNLVHLDSLDLSNCHLKGP----LSEDAFVNATKLRTLYLSGNPLS- 226
D +A TL N L LDLSN L L E L L L S
Sbjct: 383 SDSSCSSLAATLLAN-HSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441
Query: 227 --AADLSVALKPLTKLHRLS 244
L K L +S
Sbjct: 442 EMEDRLQALEKDKPSLRVIS 461
Score = 58.0 bits (141), Expect = 5e-09
Identities = 53/286 (18%), Positives = 89/286 (31%), Gaps = 72/286 (25%)
Query: 264 LQELDISHNPLID-AFTALLSPLESLEHLDMGYSNL-----QRISRSTFLKMTSLKTLIL 317
+Q LDI L D + LL L+ + + + L + IS S +L L L
Sbjct: 5 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDIS-SALRVNPALAELNL 63
Query: 318 SGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLP 377
N+L + G+ + L L+ +C + +L L
Sbjct: 64 RSNELG--DVGV-HCV--LQGLQTPSCKIQ-----------------KLSLQNC------ 95
Query: 378 DSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLH---VLPT 434
+ L T L+EL LS N L +
Sbjct: 96 ---------CLTGAGCG---VLSSTLRTLPT----------LQELHLSDNLLGDAGLQLL 133
Query: 435 GNLLPPQLSRLRSLDLSRCKID-----YLPPNVFNNTRNITSLNLANNNLS--MTSELSF 487
L RL L L C + L V + L ++NN+++ L
Sbjct: 134 CEGLLDPQCRLEKLQLEYCSLSAASCEPLAS-VLRAKPDFKELTVSNNDINEAGVRVLCQ 192
Query: 488 QFLDVLLELESLDLSNNNLTHIS----PTVLRHNRAITSIKLVGNP 529
D +LE+L L + +T + ++ ++ + L N
Sbjct: 193 GLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 108 bits (273), Expect = 5e-27
Identities = 48/214 (22%), Positives = 86/214 (40%), Gaps = 12/214 (5%)
Query: 40 RSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGN-PLRIIEPGVFDPLTSLEYLMLNRC 98
S L + E L I F+NL ++++ +S + L+ +E F L+ + ++ +
Sbjct: 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90
Query: 99 N-LTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQ-SGISNLPDN 156
LTYI P A L LK L + LK + + L++ ++++P N
Sbjct: 91 RNLTYIDPDALKELPLLKFLGIFNTGLKM-FPDLTKVYSTDIFFILEITDNPYMTSIPVN 149
Query: 157 VFAN-NTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLS-NCHLKGPLSEDAFVNA-T 213
F L L N + N LD++ L+ N +L + +DAF +
Sbjct: 150 AFQGLCNETLTLKLYNNGFTSVQGYAF---NGTKLDAVYLNKNKYLTV-IDKDAFGGVYS 205
Query: 214 KLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRN 247
L +S ++A S L+ L +L +
Sbjct: 206 GPSLLDVSQTSVTALP-SKGLEHLKELIARNTWT 238
Score = 103 bits (259), Expect = 4e-25
Identities = 49/242 (20%), Positives = 89/242 (36%), Gaps = 40/242 (16%)
Query: 278 FTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGN-KLETLESGLFQNLTHL 336
+ S S + L + ++L+ I F + ++ + +S + L+ LES F NL+ +
Sbjct: 23 IQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKV 82
Query: 337 SVLEL-NNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKN 395
+ +E+ N LT ++ E P L+ L + L + PD TK YS
Sbjct: 83 THIEIRNTRNLTYIDPDALKEL---PLLKFLGIFNTGLKMFPDLTKVYSTDI-------- 131
Query: 396 FDFLVILFILNETVFHENYTYPDLEELRLSGNP-LHVLPTGNLLPPQLSRLRSLDLSRCK 454
L ++ NP + +P N + +L L
Sbjct: 132 -----------------------FFILEITDNPYMTSIPV-NAFQGLCNETLTLKLYNNG 167
Query: 455 IDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVL 514
+ FN T+ N L++ + +F + L LD+S ++T + L
Sbjct: 168 FTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSL--LDVSQTSVTALPSKGL 225
Query: 515 RH 516
H
Sbjct: 226 EH 227
Score = 102 bits (256), Expect = 1e-24
Identities = 41/206 (19%), Positives = 78/206 (37%), Gaps = 11/206 (5%)
Query: 181 TTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKL 240
+ +L L HL+ + AF N + +Y+S + S + L+K+
Sbjct: 24 QRIPSLPPSTQTLKLIETHLRT-IPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKV 82
Query: 241 HRLSLR-NCGLSRLPANTFHRFTCLQELDISHNPL--IDAFTALLSPLESLEHLDMGYSN 297
+ +R L+ + + L+ L I + L T + S + L++ +
Sbjct: 83 THIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYS-TDIFFILEITDNP 141
Query: 298 -LQRISRSTFLKMTS-LKTLILSGNKLETLESGLFQNLTHLSVLEL-NNCGLTRLNETVF 354
+ I + F + + TL L N +++ F N T L + L N LT +++ F
Sbjct: 142 YMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAF-NGTKLDAVYLNKNKYLTVIDKDAF 200
Query: 355 HENYTYPDLEELRLSGNPLHVLPDST 380
Y+ L +S + LP
Sbjct: 201 GGVYS--GPSLLDVSQTSVTALPSKG 224
Score = 101 bits (254), Expect = 2e-24
Identities = 42/235 (17%), Positives = 81/235 (34%), Gaps = 34/235 (14%)
Query: 63 LTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCN-LTYISPSAFDNLNHLKTLELSQ 121
+ L L LR I F L ++ + ++ L + +F NL+ + +E+
Sbjct: 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89
Query: 122 NKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPD-NVFANNTWLRNLNLAENELIDLDVA 180
+ ++ID L L L L + +G+ PD + L + +N +
Sbjct: 90 TRNLTYID-PDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTS--- 145
Query: 181 TTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATK-LRTLYLSGNPLSAADLSVALKPLTK 239
+ +AF TL L N ++ + TK
Sbjct: 146 -----------------------IPVNAFQGLCNETLTLKLYNNGFTS--VQGYAFNGTK 180
Query: 240 LHRLSL-RNCGLSRLPANTFHR-FTCLQELDISHNPLIDAFTALLSPLESLEHLD 292
L + L +N L+ + + F ++ LD+S + + L L+ L +
Sbjct: 181 LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARN 235
Score = 97.8 bits (244), Expect = 4e-23
Identities = 43/282 (15%), Positives = 84/282 (29%), Gaps = 68/282 (24%)
Query: 68 KLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSH 127
++ ++ I P + S + L L +L I AF NL ++ + +S +
Sbjct: 15 DFRVTCKDIQRI-PSL---PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSID----- 65
Query: 128 IDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNL 187
+ L + F N + + ++ + +NL
Sbjct: 66 --------------------VTLQQLESHSFYNLSKVTHIEIRNT------------RNL 93
Query: 188 VHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSL-R 246
++D DA L+ L + L + L +
Sbjct: 94 TYIDP--------------DALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITD 139
Query: 247 NCGLSRLPANTFHRFT-CLQELDISHNPL----IDAFTALLSPLESLEHLDMGYSN-LQR 300
N ++ +P N F L + +N AF L+ + + + L
Sbjct: 140 NPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGT-----KLDAVYLNKNKYLTV 194
Query: 301 ISRSTFLKMTS-LKTLILSGNKLETLESGLFQNLTHLSVLEL 341
I + F + S L +S + L S ++L L
Sbjct: 195 IDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236
Score = 76.2 bits (188), Expect = 1e-15
Identities = 31/158 (19%), Positives = 56/158 (35%), Gaps = 6/158 (3%)
Query: 17 PGLITINL-NANPIQPVE-GAFLVARSLLYLYMQECTLSKI-NPQFFTNLTTLNKLDLSG 73
+ I + N + ++ A L +L + L + + L+++
Sbjct: 80 SKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITD 139
Query: 74 NP-LRIIEPGVFDPLTS-LEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWT 131
NP + I F L + L L T + AF+ L + L++NK + ID
Sbjct: 140 NPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTK-LDAVYLNKNKYLTVIDKD 198
Query: 132 LVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNL 169
G LD+ Q+ ++ LP + L N
Sbjct: 199 AFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236
Score = 71.2 bits (175), Expect = 5e-14
Identities = 36/227 (15%), Positives = 63/227 (27%), Gaps = 75/227 (33%)
Query: 310 TSLKTLILSGNKLETLESGLFQNLTHLSVLELN-NCGLTRLNETVFHENYTYPDLEELRL 368
S +TL L L T+ S F NL ++S + ++ + L +L F+ + + +
Sbjct: 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNL---SKVTHIEI 87
Query: 369 SGNP-LHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGN 427
L + L P L+ L +
Sbjct: 88 RNTRNLTYIDPDA---------------LKEL-----------------PLLKFLGIFNT 115
Query: 428 PLHVLPTGNLLPPQLSRLRSLDLSR-CKIDYLPPNVFNNTRNITSLNLANNNLSMTSELS 486
L + P + L+++ + +P N F N
Sbjct: 116 GLKMFPDLTKVY-STDIFFILEITDNPYMTSIPVNAFQGLCN------------------ 156
Query: 487 FQFLDVLLELESLDLSNNNLTHISPTV----------LRHNRAITSI 523
E +L L NN T + L N+ +T I
Sbjct: 157 --------ETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVI 195
Score = 51.9 bits (125), Expect = 2e-07
Identities = 23/113 (20%), Positives = 50/113 (44%), Gaps = 11/113 (9%)
Query: 418 DLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANN 477
E+ R++ + +P+ LPP ++L L + +P + F+N NI+ + ++ +
Sbjct: 12 QEEDFRVTCKDIQRIPS---LPPST---QTLKLIETHLRTIPSHAFSNLPNISRIYVSID 65
Query: 478 N-LSMTSELSFQFLDVLLELESLDLSNNN-LTHISPTVLRHNRAITSIKLVGN 528
L SF L ++ +++ N LT+I P L+ + + +
Sbjct: 66 VTLQQLESHSF---YNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT 115
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 109 bits (275), Expect = 9e-27
Identities = 56/256 (21%), Positives = 74/256 (28%), Gaps = 69/256 (26%)
Query: 310 TSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLS 369
S + L L L ++ T +L L+ L + Y L +L L
Sbjct: 10 ASHLEVNCDKRNLTALPPDLPKDTT---ILHLSENLLYTFSLATLM---PYTRLTQLNLD 63
Query: 370 GNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPL 429
L L L P L L LS N L
Sbjct: 64 RAELTKLQ-----------------VDGTL-----------------PVLGTLDLSHNQL 89
Query: 430 HVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQF 489
LP L L L LD+S ++ LP + L L N L
Sbjct: 90 QSLPL---LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL-- 144
Query: 490 LDVLLELESLDLSNNNLTHISPTV-----------LRHNR------------AITSIKLV 526
+LE L L+NNNLT + + L+ N + L
Sbjct: 145 -TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH 203
Query: 527 GNPWKCDCNIADMWEW 542
GNPW C+C I W
Sbjct: 204 GNPWLCNCEILYFRRW 219
Score = 109 bits (275), Expect = 9e-27
Identities = 50/237 (21%), Positives = 76/237 (32%), Gaps = 38/237 (16%)
Query: 136 NLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDL 195
+ ++ + ++ LP ++ + L+L+EN L L L+L
Sbjct: 8 KVASHLEVNCDKRNLTALPPDLPKD---TTILHLSENLLYTFS--LATLMPYTRLTQLNL 62
Query: 196 SNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPA 255
L L TL LS N L + L + + L L L + L+ LP
Sbjct: 63 DRAELT---KLQVDGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPL 117
Query: 256 NTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTL 315
LQEL + N L+ + L+ L
Sbjct: 118 GALRGLGELQELYLKGN------------------------ELKTLPPGLLTPTPKLEKL 153
Query: 316 ILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNP 372
L+ N L L +GL L +L L L L + + F L L GNP
Sbjct: 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF----GSHLLPFAFLHGNP 206
Score = 107 bits (268), Expect = 7e-26
Identities = 51/187 (27%), Positives = 76/187 (40%), Gaps = 15/187 (8%)
Query: 41 SLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNL 100
L++ E L + T L +L+L L ++ V L L L L+ L
Sbjct: 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTLDLSHNQL 89
Query: 101 TYISPSAFDNLNHLKTLELSQNKLKSHIDWTL---VLGNLGKLDTLDLRQSGISNLPDNV 157
+ P L L L++S N+L S L L LG+L L L+ + + LP +
Sbjct: 90 QSL-PLLGQTLPALTVLDVSFNRLTS-----LPLGALRGLGELQELYLKGNELKTLPPGL 143
Query: 158 FANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRT 217
L L+LA N L +L L L +LD+L L L + + F + L
Sbjct: 144 LTPTPKLEKLSLANNNLTEL--PAGLLNGLENLDTLLLQENSLYT-IPKGFFGS-HLLPF 199
Query: 218 LYLSGNP 224
+L GNP
Sbjct: 200 AFLHGNP 206
Score = 106 bits (267), Expect = 1e-25
Identities = 53/210 (25%), Positives = 70/210 (33%), Gaps = 34/210 (16%)
Query: 64 TTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNK 123
L LS N L P T L L L+R LT + L L TL+LS N+
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQ 88
Query: 124 LKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTL 183
L+S L+ L L LD+ + +++LP
Sbjct: 89 LQS---LPLLGQTLPALTVLDVSFNRLTSLPLGALR------------------------ 121
Query: 184 GQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRL 243
L L L L LK L KL L L+ N L+ + L L L L
Sbjct: 122 --GLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNNLTELPAGL-LNGLENLDTL 177
Query: 244 SLRNCGLSRLPANTFHRFTCLQELDISHNP 273
L+ L +P F L + NP
Sbjct: 178 LLQENSLYTIPKGFFGSHL-LPFAFLHGNP 206
Score = 97.5 bits (243), Expect = 1e-22
Identities = 50/166 (30%), Positives = 74/166 (44%), Gaps = 7/166 (4%)
Query: 213 TKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHN 272
L+LS N L L+ L P T+L +L+L L++L L LD+SHN
Sbjct: 31 KDTTILHLSENLLYTFSLA-TLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHN 87
Query: 273 PLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQN 332
L + L L +L LD+ ++ L + + L+ L L GN+L+TL GL
Sbjct: 88 QL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 333 LTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPD 378
L L L N LT L + + +L+ L L N L+ +P
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNG---LENLDTLLLQENSLYTIPK 189
Score = 94.0 bits (234), Expect = 3e-21
Identities = 33/110 (30%), Positives = 51/110 (46%)
Query: 17 PGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPL 76
P L T++L+ N +Q + +L L + L+ + L L +L L GN L
Sbjct: 77 PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 77 RIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKS 126
+ + PG+ P LE L L NLT + + L +L TL L +N L +
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186
Score = 72.1 bits (177), Expect = 6e-14
Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
Query: 17 PGLITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP 75
P L ++++ N + + GA L LY++ L + P T L KL L+ N
Sbjct: 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159
Query: 76 LRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQN 122
L + G+ + L +L+ L+L +L I F + L L N
Sbjct: 160 LTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL-LPFAFLHGN 205
Score = 37.4 bits (87), Expect = 0.010
Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 6/70 (8%)
Query: 442 LSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDL 501
++ ++ + + LPP++ +T L+L+ N L S + L L+L
Sbjct: 9 VASHLEVNCDKRNLTALPPDLPKDTTI---LHLSENLLYTFSLATL---MPYTRLTQLNL 62
Query: 502 SNNNLTHISP 511
LT +
Sbjct: 63 DRAELTKLQV 72
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 109 bits (274), Expect = 2e-26
Identities = 55/302 (18%), Positives = 105/302 (34%), Gaps = 48/302 (15%)
Query: 62 NLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQ 121
L K+ + + + L + L +T I LN+L LEL
Sbjct: 17 ALANAIKIAAGKS--NVTDTVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKD 72
Query: 122 NKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVAT 181
N++ + + L NL K+ L+L + + N+ A ++ L+L ++ D+
Sbjct: 73 NQI-TDLA---PLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTPL- 125
Query: 182 TLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLH 241
L +L L L + + T L+ L + +S DL+ L L+KL
Sbjct: 126 ---AGLSNLQVLYLDLNQIT---NISPLAGLTNLQYLSIGNAQVS--DLT-PLANLSKLT 176
Query: 242 RLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRI 301
L + +S + L E+ + +N + D +SPL +
Sbjct: 177 TLKADDNKISDISP--LASLPNLIEVHLKNNQISD-----VSPLANT------------- 216
Query: 302 SRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYP 361
++L + L+ + NL +V++ + + Y P
Sbjct: 217 --------SNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASP 268
Query: 362 DL 363
+L
Sbjct: 269 NL 270
Score = 93.2 bits (232), Expect = 5e-21
Identities = 45/240 (18%), Positives = 97/240 (40%), Gaps = 25/240 (10%)
Query: 134 LGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSL 193
L + +S +++ A+ + L+ + ++ Q L +L L
Sbjct: 15 DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGV----QYLNNLIGL 68
Query: 194 DLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRL 253
+L + + N TK+ L LSGNPL ++S A+ L + L L + ++ +
Sbjct: 69 ELKDNQIT---DLAPLKNLTKITELELSGNPLK--NVS-AIAGLQSIKTLDLTSTQITDV 122
Query: 254 PANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLK 313
+ LQ L + N + + + L+ L +L++L +G + + ++ ++ L
Sbjct: 123 TP--LAGLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSDLT--PLANLSKLT 176
Query: 314 TLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPL 373
TL NK+ + +L +L + L N ++ ++ N L + L+ +
Sbjct: 177 TLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLANTSN-----LFIVTLTNQTI 229
Score = 89.0 bits (221), Expect = 2e-19
Identities = 55/336 (16%), Positives = 112/336 (33%), Gaps = 64/336 (19%)
Query: 154 PDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNAT 213
PD AN + ++ + D +L + +L + + +
Sbjct: 14 PDPALAN---AIKIAAGKSNVTDTVTQA----DLDGITTLSAFGTGVT---TIEGVQYLN 63
Query: 214 KLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNP 273
L L L N ++ DL+ LK LTK+ L L L + A ++ LD++
Sbjct: 64 NLIGLELKDNQIT--DLA-PLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQ 118
Query: 274 LIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNL 333
+ D L+ L +L+ L + + + IS +T+L+ L + ++ L NL
Sbjct: 119 ITDVTP--LAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLTP--LANL 172
Query: 334 THLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIW 393
+ L+ L+ ++ ++ ++ N L E+ L N + +
Sbjct: 173 SKLTTLKADDNKISDISPLASLPN-----LIEVHLKNNQISDVS---------------- 211
Query: 394 KNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRC 453
+L + L+ + P + + +
Sbjct: 212 -PLANT-----------------SNLFIVTLTNQTITNQPVFY----NNNLVVPNVVKGP 249
Query: 454 KIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQF 489
+ P ++ S NL N S + +S+ F
Sbjct: 250 SGAPIAPATISDNGTYASPNLTWNLTSFINNVSYTF 285
Score = 85.1 bits (211), Expect = 3e-18
Identities = 51/318 (16%), Positives = 99/318 (31%), Gaps = 61/318 (19%)
Query: 211 NATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDIS 270
+ + ++ +V L + LS G++ + L L++
Sbjct: 17 ALANAIKIAAGKSNVTD---TVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELK 71
Query: 271 HNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLF 330
N + D L L + L++ + L+ +S + S+KTL L+ ++ +
Sbjct: 72 DNQITDLAP--LKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTSTQITDVTP--L 125
Query: 331 QNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPT 390
L++L VL L+ +T ++ N L+ L + +
Sbjct: 126 AGLSNLQVLYLDLNQITNISPLAGLTN-----LQYLSIGNAQV----------------- 163
Query: 391 QIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDL 450
+ L L L L+ N + + L L + L
Sbjct: 164 ---SDLTPLANL--------------SKLTTLKADDNKISDISP----LASLPNLIEVHL 202
Query: 451 SRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHIS 510
+I + P NT N+ + L N ++ L V + + I+
Sbjct: 203 KNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVP-----NVVKGPSGAPIA 255
Query: 511 PTVLRHNRAITSIKLVGN 528
P + N S L N
Sbjct: 256 PATISDNGTYASPNLTWN 273
Score = 83.6 bits (207), Expect = 1e-17
Identities = 42/281 (14%), Positives = 87/281 (30%), Gaps = 58/281 (20%)
Query: 234 LKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDM 293
L +++ ++ T + L + + L +L L++
Sbjct: 15 DPALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLEL 70
Query: 294 GYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETV 353
+ + ++ +T + L LSGN L+ + + L + L+L + +T +
Sbjct: 71 KDNQITDLA--PLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP-- 124
Query: 354 FHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHEN 413
+L+ L L N + + L
Sbjct: 125 ---LAGLSNLQVLYLDLNQITNIS-----------------PLAGL-------------- 150
Query: 414 YTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLN 473
+L+ L + + L LS+L +L KI + P + N+ ++
Sbjct: 151 ---TNLQYLSIGNAQVSDLTPLA----NLSKLTTLKADDNKISDISP--LASLPNLIEVH 201
Query: 474 LANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVL 514
L NN +S L L + L+N +T+
Sbjct: 202 LKNNQIS-----DVSPLANTSNLFIVTLTNQTITNQPVFYN 237
Score = 79.3 bits (196), Expect = 3e-16
Identities = 44/266 (16%), Positives = 88/266 (33%), Gaps = 58/266 (21%)
Query: 264 LQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLE 323
++ + + D T + L+ + L + + I + +L L L N++
Sbjct: 21 AIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQIT 76
Query: 324 TLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQY 383
L +NLT ++ LEL+ L ++ ++ L L+ + +
Sbjct: 77 DLAP--LKNLTKITELELSGNPLKNVSA-----IAGLQSIKTLDLTSTQITDVTPLAG-- 127
Query: 384 SMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLS 443
+L+ L L N + + L L+
Sbjct: 128 --------------------------------LSNLQVLYLDLNQITNIS--PL--AGLT 151
Query: 444 RLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSN 503
L+ L + ++ L P N +T+L +N +S L L L + L N
Sbjct: 152 NLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS-----DISPLASLPNLIEVHLKN 204
Query: 504 NNLTHISPTVLRHNRAITSIKLVGNP 529
N ++ +SP L + + + L
Sbjct: 205 NQISDVSP--LANTSNLFIVTLTNQT 228
Score = 74.0 bits (182), Expect = 1e-14
Identities = 52/248 (20%), Positives = 83/248 (33%), Gaps = 56/248 (22%)
Query: 282 LSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLEL 341
L + + G SN+ T + + TL G + T+E Q L +L LEL
Sbjct: 15 DPALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLEL 70
Query: 342 NNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVI 401
+ +T L + EL LSGNPL + L
Sbjct: 71 KDNQITDLAPLK-----NLTKITELELSGNPLKNV-----------------SAIAGL-- 106
Query: 402 LFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPN 461
++ L L+ + + L LS L+ L L +I + P
Sbjct: 107 ---------------QSIKTLDLTSTQITDVT--PL--AGLSNLQVLYLDLNQITNISP- 146
Query: 462 VFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAIT 521
N+ L++ N +S L L +L +L +N ++ ISP L +
Sbjct: 147 -LAGLTNLQYLSIGNAQVS-----DLTPLANLSKLTTLKADDNKISDISP--LASLPNLI 198
Query: 522 SIKLVGNP 529
+ L N
Sbjct: 199 EVHLKNNQ 206
Score = 31.2 bits (71), Expect = 1.0
Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 10/99 (10%)
Query: 15 DNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKL-DLSG 73
P LI ++L N I V +L + + T++ + NL N + SG
Sbjct: 193 SLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSG 251
Query: 74 NPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLN 112
P+ P T + NLT+ S +N++
Sbjct: 252 API--------APATISDNGTYASPNLTWNLTSFINNVS 282
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 110 bits (277), Expect = 1e-25
Identities = 60/299 (20%), Positives = 110/299 (36%), Gaps = 48/299 (16%)
Query: 66 LNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLK 125
+ + P++ I P D L + ++T + LN + + + + +K
Sbjct: 1 MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK 56
Query: 126 SHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQ 185
S + + L + L L + ++++ N L L L EN++ DL +
Sbjct: 57 S-VQ---GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSSL----K 106
Query: 186 NLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSL 245
+L L SL L + + + V+ +L +LYL N ++ D++ L LTKL LSL
Sbjct: 107 DLKKLKSLSLEHNGIS---DINGLVHLPQLESLYLGNNKIT--DIT-VLSRLTKLDTLSL 160
Query: 246 RNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRST 305
+ +S + T LQ L +S N + D L L L
Sbjct: 161 EDNQISDIVP--LAGLTKLQNLYLSKNHISD-----LRALAGL----------------- 196
Query: 306 FLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLE 364
+L L L + NL + ++ + L +Y P+++
Sbjct: 197 ----KNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVK 251
Score = 98.6 bits (245), Expect = 1e-21
Identities = 50/287 (17%), Positives = 94/287 (32%), Gaps = 29/287 (10%)
Query: 19 LITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRI 78
I NL + S+ + + + L + KL L+GN L
Sbjct: 23 TIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTD 79
Query: 79 IEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLG 138
I+P L +L +L L+ + +S +L LK+L L N + I+ L +L
Sbjct: 80 IKP--LTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGISD-IN---GLVHLP 131
Query: 139 KLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNC 198
+L++L L + I+++ + T L L+L +N++ D+ L L +L LS
Sbjct: 132 QLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVPL----AGLTKLQNLYLSKN 185
Query: 199 HLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTF 258
H+ A L L L ++ L + + + +
Sbjct: 186 HIS---DLRALAGLKNLDVLELFSQECLNKPIN-HQSNLVVPNTVKNTD--------GSL 233
Query: 259 HRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRST 305
+ + P + + S +
Sbjct: 234 VTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHG 280
Score = 87.5 bits (216), Expect = 4e-18
Identities = 48/317 (15%), Positives = 97/317 (30%), Gaps = 56/317 (17%)
Query: 215 LRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPL 274
+ P+ + + + +L+ ++ T + + ++ +++ +
Sbjct: 1 MGETITVSTPIK--QIF-PDDAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDI 55
Query: 275 IDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLT 334
+ L ++ L + + L I + +L L L NK++ L S ++L
Sbjct: 56 KSVQG--IQYLPNVTKLFLNGNKLTDIK--PLTNLKNLGWLFLDENKIKDLSS--LKDLK 109
Query: 335 HLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWK 394
L L L + G++ +N V LE L L N + +
Sbjct: 110 KLKSLSLEHNGISDINGLVHLPQ-----LESLYLGNNKITDIT----------------- 147
Query: 395 NFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCK 454
L L+ L L N + + L L++L++L LS+
Sbjct: 148 VLSRL-----------------TKLDTLSLEDNQISDIV--PL--AGLTKLQNLYLSKNH 186
Query: 455 IDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVL 514
I L +N+ L L + L V +++ D S IS
Sbjct: 187 ISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGD 244
Query: 515 RHNRAITSIKLVGNPWK 531
+
Sbjct: 245 YEKPNVKWHLPEFTNEV 261
Score = 86.7 bits (214), Expect = 7e-18
Identities = 45/272 (16%), Positives = 91/272 (33%), Gaps = 58/272 (21%)
Query: 264 LQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLE 323
+ E P+ F ++ ++ T ++ S+ +I + + ++
Sbjct: 1 MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIK 56
Query: 324 TLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQY 383
+++ Q L +++ L LN LT + +L L L N +
Sbjct: 57 SVQG--IQYLPNVTKLFLNGNKLTDIKP-----LTNLKNLGWLFLDENKI---------- 99
Query: 384 SMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLS 443
K+ L L L+ L L N + + L L
Sbjct: 100 ----------KDLSSLKDL--------------KKLKSLSLEHNGISDIN--GL--VHLP 131
Query: 444 RLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSN 503
+L SL L KI + + + +L+L +N +S L L +L++L LS
Sbjct: 132 QLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS-----DIVPLAGLTKLQNLYLSK 184
Query: 504 NNLTHISPTVLRHNRAITSIKLVGNPWKCDCN 535
N+++ + L + + ++L
Sbjct: 185 NHISDLRA--LAGLKNLDVLELFSQECLNKPI 214
Score = 85.2 bits (210), Expect = 2e-17
Identities = 49/280 (17%), Positives = 98/280 (35%), Gaps = 56/280 (20%)
Query: 260 RFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSG 319
F + ++ + DA T + L S++ + S+++ + + ++ L L+G
Sbjct: 19 AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNG 74
Query: 320 NKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDS 379
NKL ++ NL +L L L+ + L+ ++ L+ L L N + +
Sbjct: 75 NKLTDIKP--LTNLKNLGWLFLDENKIKDLS---SLKDLK--KLKSLSLEHNGISDIN-- 125
Query: 380 TKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLP 439
L P LE L L N + + L
Sbjct: 126 ---------------GLVHL-----------------PQLESLYLGNNKITDIT--VL-- 149
Query: 440 PQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESL 499
+L++L +L L +I + P + +L L+ N++S + L L L+ L
Sbjct: 150 SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-----DLRALAGLKNLDVL 202
Query: 500 DLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADM 539
+L + + + ++K I+D
Sbjct: 203 ELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDD 242
Score = 82.1 bits (202), Expect = 2e-16
Identities = 46/192 (23%), Positives = 77/192 (40%), Gaps = 16/192 (8%)
Query: 13 NLDN-PGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDL 71
+ P + + LN N + ++ ++L +L++ E + ++ +L L L L
Sbjct: 60 GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSL 116
Query: 72 SGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWT 131
N + I L LE L L +T I+ L L TL L N++ I
Sbjct: 117 EHNGISDING--LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISD-IV-- 169
Query: 132 LVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLD 191
L L KL L L ++ IS+L A L L L E ++ + NLV +
Sbjct: 170 -PLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPI--NHQSNLVVPN 224
Query: 192 SLDLSNCHLKGP 203
++ ++ L P
Sbjct: 225 TVKNTDGSLVTP 236
Score = 41.6 bits (97), Expect = 8e-04
Identities = 18/139 (12%), Positives = 41/139 (29%), Gaps = 5/139 (3%)
Query: 16 NPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP 75
L T++L N I + L LY+ + +S + L L+ L+L
Sbjct: 152 LTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQE 208
Query: 76 LRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLG 135
L + + + ++P + + + + + + + +
Sbjct: 209 CLNKPINHQSNLVVPNTVKNT--DGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFY 266
Query: 136 NLGKLDTLDLRQSGISNLP 154
+ R G P
Sbjct: 267 QPVTIGKAKARFHGRVTQP 285
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 104 bits (261), Expect = 1e-23
Identities = 65/351 (18%), Positives = 103/351 (29%), Gaps = 64/351 (18%)
Query: 192 SLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLS 251
S + + G D F K L G + A + + + L L LS
Sbjct: 14 SQNSFYNTISG-TYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS 72
Query: 252 RLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTS 311
LP N + L+I+ N L +L SLE+LD + L + S
Sbjct: 73 SLPDNLP---PQITVLEITQNAL----ISLPELPASLEYLDACDNRLSTLPEL----PAS 121
Query: 312 LKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGN 371
LK L + N+L L L + +N LT L E LE L + N
Sbjct: 122 LKHLDVDNNQLTMLPELP----ALLEYINADNNQLTMLPELPTS-------LEVLSVRNN 170
Query: 372 PLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHV 431
L LP+ + LE L +S N L
Sbjct: 171 QLTFLPELPES------------------------------------LEALDVSTNLLES 194
Query: 432 LPTGNLLPPQLSRLR-SLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFL 490
LP + +I ++P N+ + ++ L +N L S + L
Sbjct: 195 LPAVPVRNHHSEETEIFFRCRENRITHIPENILSLD-PTCTIILEDNPL---SSRIRESL 250
Query: 491 DVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWE 541
+ +R + P +++ +W
Sbjct: 251 SQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWH 301
Score = 100 bits (251), Expect = 2e-22
Identities = 61/324 (18%), Positives = 100/324 (30%), Gaps = 41/324 (12%)
Query: 62 NLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLML---NRCNLTYISPSAFDNLNHLKTLE 118
N +L+ + N + F E L NR + +N L+
Sbjct: 9 NNFSLS-QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQ 65
Query: 119 LSQNKLKSHIDWTLVLGNLGK-LDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDL 177
L++ L S + NL + L++ Q+ + +LP+ L L+ +N L
Sbjct: 66 LNRLNLSS------LPDNLPPQITVLEITQNALISLPELP----ASLEYLDACDNRL--- 112
Query: 178 DVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPL 237
+TL + L LD+ N L L E L + N L+
Sbjct: 113 ---STLPELPASLKHLDVDNNQLTM-LPELP----ALLEYINADNNQLTMLPEL-----P 159
Query: 238 TKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLI---DAFTALLSPLESLEHLDMG 294
T L LS+RN L+ LP L+ LD+S N L E+
Sbjct: 160 TSLEVLSVRNNQLTFLPEL----PESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCR 215
Query: 295 YSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVF 354
+ + I + L + T+IL N L + T + +
Sbjct: 216 ENRITHIPEN-ILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQN 274
Query: 355 HENYTYPDLEELRLSGNPLHVLPD 378
+ D N +
Sbjct: 275 TLHRPLADAVTAWFPENKQSDVSQ 298
Score = 97.3 bits (242), Expect = 3e-21
Identities = 48/299 (16%), Positives = 91/299 (30%), Gaps = 64/299 (21%)
Query: 234 LKPLTKLHRLS--LRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTAL-LSPLESLEH 290
+ P+ LS +S A+ F + ++ + +A + L +
Sbjct: 4 MLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSE 63
Query: 291 LDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLN 350
L + NL + + + L ++ N L +L L L+ + L+ L
Sbjct: 64 LQLNRLNLSSLPDNLP---PQITVLEITQNALISLPE----LPASLEYLDACDNRLSTLP 116
Query: 351 ETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVF 410
E L+ L + N L +LP+
Sbjct: 117 ELP-------ASLKHLDVDNNQLTMLPELPAL---------------------------- 141
Query: 411 HENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNIT 470
LE + N L +LP + L L + ++ +LP ++
Sbjct: 142 --------LEYINADNNQLTMLP------ELPTSLEVLSVRNNQLTFLPELP----ESLE 183
Query: 471 SLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNP 529
+L+++ N L + + N +THI P + +I L NP
Sbjct: 184 ALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHI-PENILSLDPTCTIILEDNP 241
Score = 95.8 bits (238), Expect = 9e-21
Identities = 59/373 (15%), Positives = 109/373 (29%), Gaps = 62/373 (16%)
Query: 132 LVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLD 191
L + N L + + + IS + F+ L + V+ +
Sbjct: 5 LPINNNFSL-SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEA-VSLLKECLINQFS 62
Query: 192 SLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLS 251
L L+ +L L ++ ++ L ++ N L + L L + LS
Sbjct: 63 ELQLNRLNLSS-LPDNLP---PQITVLEITQNALISLPEL-----PASLEYLDACDNRLS 113
Query: 252 RLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTS 311
LP L+ LD+ +N L T L LE+++ + L + TS
Sbjct: 114 TLPE----LPASLKHLDVDNNQL----TMLPELPALLEYINADNNQLTMLPEL----PTS 161
Query: 312 LKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGN 371
L+ L + N+L L L L+++ L L +++ R N
Sbjct: 162 LEVLSVRNNQLTFLPELP----ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCREN 217
Query: 372 PLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHV 431
+ +P++ + L + L NPL
Sbjct: 218 RITHIPEN----------------------ILSL-----------DPTCTIILEDNPLSS 244
Query: 432 LPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLD 491
+L Q + R R + A + S++S +
Sbjct: 245 RIRESL--SQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHA 302
Query: 492 VLLELESLDLSNN 504
E + S
Sbjct: 303 FEHEEHANTFSAF 315
Score = 73.9 bits (181), Expect = 7e-14
Identities = 49/290 (16%), Positives = 88/290 (30%), Gaps = 43/290 (14%)
Query: 40 RSLLYLYMQECTLSKINPQFFTNLTTLN-----------------KLDLSGNPLRIIEPG 82
L + LS + +T L LD N L +
Sbjct: 59 NQFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLPELPASLEYLDACDNRLSTLPEL 118
Query: 83 VFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDT 142
SL++L ++ LT + L+ + N+L T++ L+
Sbjct: 119 ----PASLKHLDVDNNQLTMLPEL----PALLEYINADNNQL------TMLPELPTSLEV 164
Query: 143 LDLRQSGISNLPDNVFANNTWLRNLNLAENELIDL-DVATTLGQNLVHLDSLDLSNCHLK 201
L +R + ++ LP+ L L+++ N L L V + +
Sbjct: 165 LSVRNNQLTFLPELP----ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT 220
Query: 202 G-PLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPA--NTF 258
P + ++ T+ L NPLS+ + +L T S NT
Sbjct: 221 HIP---ENILSLDPTCTIILEDNPLSSR-IRESLSQQTAQPDYHGPRIYFSMSDGQQNTL 276
Query: 259 HRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLK 308
HR + + E EH + + L R+S + +
Sbjct: 277 HRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSAR 326
Score = 34.2 bits (78), Expect = 0.16
Identities = 18/141 (12%), Positives = 37/141 (26%), Gaps = 8/141 (5%)
Query: 40 RSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCN 99
+ ++ +E ++ I P+ +L + L NPL T+ R
Sbjct: 207 ETEIFFRCRENRITHI-PENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIY 265
Query: 100 LTY---ISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDN 156
+ + L T +NK + +T +S+
Sbjct: 266 FSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSA 325
Query: 157 V----FANNTWLRNLNLAENE 173
F L+ +
Sbjct: 326 RNTSGFREQVAAWLEKLSASA 346
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 97.8 bits (244), Expect = 3e-23
Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 4/122 (3%)
Query: 52 LSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNL 111
+ I P F+ L ++DLS N + + P F L SL L+L +T + S F+ L
Sbjct: 44 IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGL 103
Query: 112 NHLKTLELSQNKLKS-HIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLA 170
L+ L L+ NK+ +D +L L+ L L + + + F+ ++ ++LA
Sbjct: 104 FSLQLLLLNANKINCLRVD---AFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLA 160
Query: 171 EN 172
+N
Sbjct: 161 QN 162
Score = 97.4 bits (243), Expect = 4e-23
Identities = 43/182 (23%), Positives = 66/182 (36%), Gaps = 37/182 (20%)
Query: 361 PDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLE 420
+ E+RL N + V+P F Y L
Sbjct: 32 ETITEIRLEQNTIKVIP-----------------------------PGAFSP---YKKLR 59
Query: 421 ELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLS 480
+ LS N + L L L SL L KI LP ++F ++ L L N ++
Sbjct: 60 RIDLSNNQISELAPDAFQ--GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN 117
Query: 481 MTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMW 540
+F L L L L +N L I+ RAI ++ L NP+ CDC++ +
Sbjct: 118 CLRVDAF---QDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLA 174
Query: 541 EW 542
++
Sbjct: 175 DY 176
Score = 95.9 bits (239), Expect = 1e-22
Identities = 37/162 (22%), Positives = 70/162 (43%), Gaps = 29/162 (17%)
Query: 64 TTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNK 123
T+ ++ L N +++I PG F P L + L+ ++ ++P AF L L +L L NK
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 124 LKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTL 183
+ + + + L L L L + I+ L + F
Sbjct: 92 ITE-LPKS-LFEGLFSLQLLLLNANKINCLRVDAF------------------------- 124
Query: 184 GQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPL 225
Q+L +L+ L L + L+ +++ F ++T++L+ NP
Sbjct: 125 -QDLHNLNLLSLYDNKLQT-IAKGTFSPLRAIQTMHLAQNPF 164
Score = 87.4 bits (217), Expect = 9e-20
Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 3/126 (2%)
Query: 21 TINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRII 79
I L N I+ + GAF + L + + +S++ P F L +LN L L GN + +
Sbjct: 36 EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL 95
Query: 80 EPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGK 139
+F+ L SL+ L+LN + + AF +L++L L L NKL++ T L
Sbjct: 96 PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGT--FSPLRA 153
Query: 140 LDTLDL 145
+ T+ L
Sbjct: 154 IQTMHL 159
Score = 83.9 bits (208), Expect = 2e-18
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
Query: 19 LITINLNANPIQPV-EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLR 77
L I+L+ N I + AF RSL L + ++++ F L +L L L+ N +
Sbjct: 58 LRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN 117
Query: 78 IIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQN 122
+ F L +L L L L I+ F L ++T+ L+QN
Sbjct: 118 CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 81.6 bits (202), Expect = 9e-18
Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 4/135 (2%)
Query: 141 DTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHL 200
+ L Q+ I +P F+ LR ++L+ N++ +L G L L+SL L +
Sbjct: 35 TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG--LRSLNSLVLYGNKI 92
Query: 201 KGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHR 260
L + F L+ L L+ N ++ + A + L L+ LSL + L + TF
Sbjct: 93 TE-LPKSLFEGLFSLQLLLLNANKINCLRVD-AFQDLHNLNLLSLYDNKLQTIAKGTFSP 150
Query: 261 FTCLQELDISHNPLI 275
+Q + ++ NP I
Sbjct: 151 LRAIQTMHLAQNPFI 165
Score = 77.0 bits (190), Expect = 4e-16
Identities = 31/139 (22%), Positives = 51/139 (36%), Gaps = 27/139 (19%)
Query: 242 RLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRI 301
+ L + +P F + L+ +D+S+N + +
Sbjct: 36 EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN------------------------QISEL 71
Query: 302 SRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYP 361
+ F + SL +L+L GNK+ L LF+ L L +L LN + L F
Sbjct: 72 APDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQ---DLH 128
Query: 362 DLEELRLSGNPLHVLPDST 380
+L L L N L + T
Sbjct: 129 NLNLLSLYDNKLQTIAKGT 147
Score = 72.4 bits (178), Expect = 2e-14
Identities = 35/179 (19%), Positives = 65/179 (36%), Gaps = 43/179 (24%)
Query: 286 ESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCG 345
E++ + + + ++ I F L+ + LS N++ L FQ L L+ L L
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 346 LTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFIL 405
+T L +++F L+ L L+ N ++ L F L
Sbjct: 92 ITELPKSLFEG---LFSLQLLLLNANKINCLRVDA---------------FQDL------ 127
Query: 406 NETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSR------CKIDYL 458
+L L L N L + G P L ++++ L++ C + +L
Sbjct: 128 -----------HNLNLLSLYDNKLQTIAKGTFSP--LRAIQTMHLAQNPFICDCHLKWL 173
Score = 35.0 bits (81), Expect = 0.045
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 17 PGLITINLNANPIQPV-EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP 75
L + LNAN I + AF +L L + + L I F+ L + + L+ NP
Sbjct: 104 FSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163
Query: 76 L 76
Sbjct: 164 F 164
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 98.6 bits (246), Expect = 7e-23
Identities = 60/293 (20%), Positives = 107/293 (36%), Gaps = 48/293 (16%)
Query: 71 LSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDW 130
P++ I D L + ++T + LN + + + + +KS +
Sbjct: 9 TVPTPIKQIFS--DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ- 62
Query: 131 TLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHL 190
+ L + L L + ++++ AN L L L EN++ DL ++L L
Sbjct: 63 --GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSL----KDLKKL 114
Query: 191 DSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGL 250
SL L + + + V+ +L +LYL N ++ D++ L LTKL LSL + +
Sbjct: 115 KSLSLEHNGIS---DINGLVHLPQLESLYLGNNKIT--DIT-VLSRLTKLDTLSLEDNQI 168
Query: 251 SRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMT 310
S + T LQ L +S N + D L L L
Sbjct: 169 SDIVP--LAGLTKLQNLYLSKNHISD-----LRALAGL---------------------K 200
Query: 311 SLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDL 363
+L L L + NL + ++ + L +Y P++
Sbjct: 201 NLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNV 253
Score = 97.0 bits (242), Expect = 2e-22
Identities = 56/284 (19%), Positives = 98/284 (34%), Gaps = 22/284 (7%)
Query: 62 NLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQ 121
K +L + + L S++ ++ N ++ + L ++ L L+
Sbjct: 22 AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG 77
Query: 122 NKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVAT 181
NKL L NL L L L ++ + +L + L++L+L N + D++
Sbjct: 78 NKLTD----IKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISDINGL- 130
Query: 182 TLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLH 241
+L L+SL L N + TKL TL L N +S D+ L LTKL
Sbjct: 131 ---VHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQIS--DIV-PLAGLTKLQ 181
Query: 242 RLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRI 301
L L +S L A L L++ ++ S L + +L
Sbjct: 182 NLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP 239
Query: 302 SRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCG 345
+ + + S +F + + G
Sbjct: 240 EIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHG 283
Score = 94.4 bits (235), Expect = 2e-21
Identities = 50/240 (20%), Positives = 89/240 (37%), Gaps = 22/240 (9%)
Query: 9 NDRRNLDN-PGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLN 67
+ D I NL + S+ + + + L +
Sbjct: 15 KQIFSDDAFAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQG--IQYLPNVT 71
Query: 68 KLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSH 127
KL L+GN L I+P L +L +L L+ + +S +L LK+L L N +
Sbjct: 72 KLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISD- 126
Query: 128 IDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNL 187
I+ L +L +L++L L + I+++ V + T L L+L +N++ D+ L
Sbjct: 127 IN---GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVPL----AGL 177
Query: 188 VHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRN 247
L +L LS H+ A L L L ++ L + + +
Sbjct: 178 TKLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQECLNKPIN-HQSNLVVPNTVKNTD 233
Score = 85.1 bits (211), Expect = 2e-18
Identities = 56/281 (19%), Positives = 91/281 (32%), Gaps = 50/281 (17%)
Query: 86 PLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDL 145
PL S + + I D L + + + L +D +
Sbjct: 2 PLGSETITVPT--PIKQIFS--DDAFAETIKDNLKKKSVTD----AVTQNELNSIDQIIA 53
Query: 146 RQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLS 205
S I ++ + L L N+L D+ NL +L L L +K
Sbjct: 54 NNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKPLA----NLKNLGWLFLDENKVK---D 104
Query: 206 EDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQ 265
+ + KL++L L N +S D++ L L +L L L N ++ + R T L
Sbjct: 105 LSSLKDLKKLKSLSLEHNGIS--DIN-GLVHLPQLESLYLGNNKITDITV--LSRLTKLD 159
Query: 266 ELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETL 325
L + N + D + PL L T L+ L LS N + L
Sbjct: 160 TLSLEDNQISD-----IVPLAGL---------------------TKLQNLYLSKNHISDL 193
Query: 326 ESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEEL 366
+ L +L VLEL + ++
Sbjct: 194 RA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT 232
Score = 85.1 bits (211), Expect = 2e-18
Identities = 50/220 (22%), Positives = 81/220 (36%), Gaps = 26/220 (11%)
Query: 154 PDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNAT 213
D+ FA NL + + D L +D + +N +K S
Sbjct: 19 SDDAFAE---TIKDNLKKKSVTDAVTQ----NELNSIDQIIANNSDIK---SVQGIQYLP 68
Query: 214 KLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNP 273
+ L+L+GN L+ D+ L L L L L + L + L+ L + HN
Sbjct: 69 NVTKLFLNGNKLT--DIK-PLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNG 123
Query: 274 LIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNL 333
+ D L L LE L +G + + I+ ++T L TL L N++ + L
Sbjct: 124 ISD--INGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGL 177
Query: 334 THLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPL 373
T L L L+ ++ L +L+ L L
Sbjct: 178 TKLQNLYLSKNHISDLRA-----LAGLKNLDVLELFSQEC 212
Score = 78.6 bits (194), Expect = 3e-16
Identities = 46/187 (24%), Positives = 76/187 (40%), Gaps = 15/187 (8%)
Query: 17 PGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPL 76
P + + LN N + ++ ++L +L++ E + ++ +L L L L N +
Sbjct: 68 PNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGI 124
Query: 77 RIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGN 136
I L LE L L +T I+ L L TL L N++ I L
Sbjct: 125 SDING--LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISD-IV---PLAG 176
Query: 137 LGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLS 196
L KL L L ++ IS+L A L L L E ++ + NLV +++ +
Sbjct: 177 LTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQ--SNLVVPNTVKNT 232
Query: 197 NCHLKGP 203
+ L P
Sbjct: 233 DGSLVTP 239
Score = 77.8 bits (192), Expect = 8e-16
Identities = 48/294 (16%), Positives = 96/294 (32%), Gaps = 56/294 (19%)
Query: 217 TLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLID 276
P+ + + + + +L+ ++ T + + ++ +++ +
Sbjct: 6 ETITVPTPIK--QIF-SDDAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKS 60
Query: 277 AFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHL 336
+ L ++ L + + L I + +L L L NK++ L S ++L L
Sbjct: 61 VQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS--LKDLKKL 114
Query: 337 SVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNF 396
L L + G++ +N V LE L L N + +
Sbjct: 115 KSLSLEHNGISDINGLVHLPQ-----LESLYLGNNKI--------------------TDI 149
Query: 397 DFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKID 456
L L L+ L L N + + L++L++L LS+ I
Sbjct: 150 TVLSRL--------------TKLDTLSLEDNQISDIVPLA----GLTKLQNLYLSKNHIS 191
Query: 457 YLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHIS 510
L +N+ L L + L V +++ D S IS
Sbjct: 192 DLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS 243
Score = 73.9 bits (182), Expect = 1e-14
Identities = 46/266 (17%), Positives = 94/266 (35%), Gaps = 56/266 (21%)
Query: 260 RFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSG 319
F + ++ + DA T + L S++ + S+++ + + ++ L L+G
Sbjct: 22 AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNG 77
Query: 320 NKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDS 379
NKL ++ NL +L L L+ + L ++ L+ L L N + +
Sbjct: 78 NKLTDIKP--LANLKNLGWLFLDENKVKDL-SSLKD----LKKLKSLSLEHNGISDIN-- 128
Query: 380 TKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLP 439
L P LE L L N + + +
Sbjct: 129 ---------------GLVHL-----------------PQLESLYLGNNKITDITVLS--- 153
Query: 440 PQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESL 499
+L++L +L L +I + P + +L L+ N++S + L L L+ L
Sbjct: 154 -RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-----DLRALAGLKNLDVL 205
Query: 500 DLSNNNLTHISPTVLRHNRAITSIKL 525
+L + + + ++K
Sbjct: 206 ELFSQECLNKPINHQSNLVVPNTVKN 231
Score = 73.5 bits (181), Expect = 2e-14
Identities = 42/248 (16%), Positives = 86/248 (34%), Gaps = 56/248 (22%)
Query: 282 LSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLEL 341
++ ++ T ++ S+ +I + + +++++ Q L +++ L L
Sbjct: 20 DDAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFL 75
Query: 342 NNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVI 401
N LT + +L L L N + K+ L
Sbjct: 76 NGNKLTDIKPL-----ANLKNLGWLFLDENKV--------------------KDLSSLKD 110
Query: 402 LFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPN 461
L L+ L L N + + L L +L SL L KI +
Sbjct: 111 L--------------KKLKSLSLEHNGISDIN--GL--VHLPQLESLYLGNNKITDITV- 151
Query: 462 VFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAIT 521
+ + +L+L +N +S L L +L++L LS N+++ + L + +
Sbjct: 152 -LSRLTKLDTLSLEDNQIS-----DIVPLAGLTKLQNLYLSKNHISDLRA--LAGLKNLD 203
Query: 522 SIKLVGNP 529
++L
Sbjct: 204 VLELFSQE 211
Score = 38.9 bits (91), Expect = 0.004
Identities = 15/110 (13%), Positives = 34/110 (30%), Gaps = 5/110 (4%)
Query: 17 PGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPL 76
L T++L N I + L LY+ + +S + L L+ L+L
Sbjct: 156 TKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQEC 212
Query: 77 RIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKS 126
L + + + ++P + + + + +
Sbjct: 213 LNKPINHQSNLVVPNTVKNT--DGSLVTPEIISDDGDYEKPNVKWHLPEF 260
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 94.0 bits (234), Expect = 5e-22
Identities = 31/154 (20%), Positives = 54/154 (35%), Gaps = 28/154 (18%)
Query: 21 TINLNANPIQ--PVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRI 78
+ LN N G F L + ++ I F + +N++ L+ N L
Sbjct: 36 ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN 95
Query: 79 IEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLG 138
++ +F L SL+ LML +T + +F L+ ++ L L N++ +
Sbjct: 96 VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITT------------ 143
Query: 139 KLDTLDLRQSGISNLPDNVFANNTWLRNLNLAEN 172
+ F L LNL N
Sbjct: 144 --------------VAPGAFDTLHSLSTLNLLAN 163
Score = 93.6 bits (233), Expect = 8e-22
Identities = 29/128 (22%), Positives = 61/128 (47%)
Query: 216 RTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLI 275
L L+ N + + + K L +L +++ N ++ + F + + E+ ++ N L
Sbjct: 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94
Query: 276 DAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTH 335
+ + LESL+ L + + + + +F+ ++S++ L L N++ T+ G F L
Sbjct: 95 NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHS 154
Query: 336 LSVLELNN 343
LS L L
Sbjct: 155 LSTLNLLA 162
Score = 92.0 bits (229), Expect = 3e-21
Identities = 34/163 (20%), Positives = 62/163 (38%), Gaps = 30/163 (18%)
Query: 64 TTLNKLDLSGNPLRIIEP-GVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQN 122
+L L+ N ++E G+F L L + + +T I AF+ + + + L+ N
Sbjct: 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91
Query: 123 KLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATT 182
+L++ + + L L TL LR + I+ + ++ F
Sbjct: 92 RLEN-VQHK-MFKGLESLKTLMLRSNRITCVGNDSF------------------------ 125
Query: 183 LGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPL 225
L + L L + + ++ AF L TL L NP
Sbjct: 126 --IGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLANPF 165
Score = 91.6 bits (228), Expect = 4e-21
Identities = 35/182 (19%), Positives = 72/182 (39%), Gaps = 36/182 (19%)
Query: 361 PDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLE 420
ELRL+ N VL + +F + P L
Sbjct: 32 QYTAELRLNNNEFTVLEATG----------------------------IFKK---LPQLR 60
Query: 421 ELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLS 480
++ S N + + G S + + L+ +++ + +F ++ +L L +N ++
Sbjct: 61 KINFSNNKITDIEEGAFE--GASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT 118
Query: 481 MTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMW 540
SF L + L L +N +T ++P +++++ L+ NP+ C+C +A +
Sbjct: 119 CVGNDSF---IGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLG 175
Query: 541 EW 542
EW
Sbjct: 176 EW 177
Score = 78.2 bits (193), Expect = 1e-16
Identities = 24/131 (18%), Positives = 49/131 (37%), Gaps = 11/131 (8%)
Query: 251 SRLPANTFHRFTCLQELDISHNPLID-AFTALLSPLESLEHLDMGYSNLQRISRSTFLKM 309
+P T EL +++N T + L L ++ + + I F
Sbjct: 28 EHIPQYT-------AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGA 80
Query: 310 TSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLS 369
+ + ++L+ N+LE ++ +F+ L L L L + +T + F + L L
Sbjct: 81 SGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFI---GLSSVRLLSLY 137
Query: 370 GNPLHVLPDST 380
N + +
Sbjct: 138 DNQITTVAPGA 148
Score = 73.5 bits (181), Expect = 6e-15
Identities = 26/160 (16%), Positives = 56/160 (35%), Gaps = 29/160 (18%)
Query: 115 KTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENEL 174
L L+ N+ + ++ T + L +L ++ + I+++ + F + + + L N L
Sbjct: 35 AELRLNNNEF-TVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL 93
Query: 175 IDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVAL 234
++ F L+TL L N ++
Sbjct: 94 ENVQ---------------------------HKMFKGLESLKTLMLRSNRITCVGNDS-F 125
Query: 235 KPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPL 274
L+ + LSL + ++ + F L L++ NP
Sbjct: 126 IGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165
Score = 34.2 bits (79), Expect = 0.091
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 17 PGLITINLNANPIQPV-EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP 75
L T+ L +N I V +F+ S+ L + + ++ + P F L +L+ L+L NP
Sbjct: 105 ESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164
Query: 76 L 76
Sbjct: 165 F 165
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 93.6 bits (233), Expect = 1e-21
Identities = 54/183 (29%), Positives = 74/183 (40%), Gaps = 35/183 (19%)
Query: 45 LYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYIS 104
L +Q L+ ++ F LT L L+L N L+ + GVFD LT L L L L +
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99
Query: 105 PSAFDNLNHLKTLELSQNKLKSHIDWTL---VLGNLGKLDTLDLRQSGISNLPDNVFANN 161
FD+L L L L N+LKS L V L KL L L + + ++P F
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLKS-----LPSGVFDRLTKLKELRLNTNQLQSIPAGAFD-- 152
Query: 162 TWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLS 221
L +L +L LS L+ + AF KL+T+ L
Sbjct: 153 ------------------------KLTNLQTLSLSTNQLQS-VPHGAFDRLGKLQTITLF 187
Query: 222 GNP 224
GN
Sbjct: 188 GNQ 190
Score = 92.8 bits (231), Expect = 2e-21
Identities = 43/153 (28%), Positives = 65/153 (42%), Gaps = 9/153 (5%)
Query: 24 LNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPG 82
L + + + F L +L + L ++ F +LT L L L+ N L + G
Sbjct: 42 LQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLG 101
Query: 83 VFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTL---VLGNLGK 139
VFD LT L+ L L L + FD L LK L L+ N+L+S + L
Sbjct: 102 VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS-----IPAGAFDKLTN 156
Query: 140 LDTLDLRQSGISNLPDNVFANNTWLRNLNLAEN 172
L TL L + + ++P F L+ + L N
Sbjct: 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
Score = 78.6 bits (194), Expect = 2e-16
Identities = 52/226 (23%), Positives = 73/226 (32%), Gaps = 64/226 (28%)
Query: 310 TSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLS 369
+ L L L TL F+ LT L+ L L+ L L+ VF + +L L L+
Sbjct: 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD---LTELGTLGLA 91
Query: 370 GNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPL 429
N L LP FD L L++L L GN
Sbjct: 92 NNQLASLPLGV---------------FDHLT-----------------QLDKLYLGGN-- 117
Query: 430 HVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQF 489
++ LP VF+ + L L N L +F
Sbjct: 118 ------------------------QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAF-- 151
Query: 490 LDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCN 535
D L L++L LS N L + + +I L GN + C
Sbjct: 152 -DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRC 196
Score = 75.1 bits (185), Expect = 3e-15
Identities = 55/184 (29%), Positives = 81/184 (44%), Gaps = 36/184 (19%)
Query: 141 DTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHL 200
+ LDL+ +G++ L D F T L LNL N+L
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-------------------------- 71
Query: 201 KGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHR 260
LS F + T+L TL L+ N L++ L V LT+L +L L L LP+ F R
Sbjct: 72 -QTLSAGVFDDLTELGTLGLANNQLASLPLGV-FDHLTQLDKLYLGGNQLKSLPSGVFDR 129
Query: 261 FTCLQELDISHNPL----IDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLI 316
T L+EL ++ N L AF L +L+ L + + LQ + F ++ L+T+
Sbjct: 130 LTKLKELRLNTNQLQSIPAGAFDK----LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTIT 185
Query: 317 LSGN 320
L GN
Sbjct: 186 LFGN 189
Score = 70.5 bits (173), Expect = 1e-13
Identities = 63/222 (28%), Positives = 84/222 (37%), Gaps = 64/222 (28%)
Query: 242 RLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRI 301
+L L++ GL+ L TF T L L++ +N LQ +
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYN------------------------QLQTL 74
Query: 302 SRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYP 361
S F +T L TL L+ N+L +L G+F +LT L L L L L VF
Sbjct: 75 SAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR---LT 131
Query: 362 DLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEE 421
L+ELRL+ N L +P FD L +L+
Sbjct: 132 KLKELRLNTNQLQSIPAGA---------------FDKLT-----------------NLQT 159
Query: 422 LRLSGNPLHVLPTG---NLLPPQLSRLRS--LDLSRCKIDYL 458
L LS N L +P G L Q L D SRC+I YL
Sbjct: 160 LSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYL 201
Score = 30.8 bits (70), Expect = 1.2
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 19 LITINLNANPIQPV-EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP 75
L + LN N +Q + GAF +L L + L + F L L + L GN
Sbjct: 133 LKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 93.6 bits (233), Expect = 9e-21
Identities = 58/360 (16%), Positives = 114/360 (31%), Gaps = 65/360 (18%)
Query: 58 QFFTNLTTLNKLDLSGNPL-----RIIEPGVFDPLTSLEYLMLNRCNLTYISPSAF---- 108
+F + + LDLS N L + + S+ L L+ +L + +
Sbjct: 16 EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQIL 75
Query: 109 -DNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNL 167
++ +L LS N L L + A + L
Sbjct: 76 AAIPANVTSLNLSGNFLS---------------------YKSSDELVKTLAAIPFTITVL 114
Query: 168 NLAENELIDL---DVATTLGQNLVHLDSLDLSNCHLKGP----LSEDAFVNATKLRTLYL 220
+L N+ + + SL+L L L + + +L L
Sbjct: 115 DLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNL 174
Query: 221 SGNPLS---AADLSVALKPL-TKLHRLSLRNCGLSRLPANTF-----HRFTCLQELDISH 271
GN L+ A+L+ L + + L L L + L++
Sbjct: 175 RGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCL 234
Query: 272 NPL----IDAFTALLSPLESLEHLDMGYSNLQRISR-------STFLKMTSLKTLILSGN 320
N L ++ L L+ L+ + + Y ++ +S+ + F + + + +G
Sbjct: 235 NCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK 294
Query: 321 KL-----ETLESGLFQNLTHLSVLELNNCGLTRLNETVFH-ENYTYPD-LEELRLSGNPL 373
++ + + + + V L N L + + E+ PD L E + PL
Sbjct: 295 EIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354
Score = 84.4 bits (209), Expect = 1e-17
Identities = 51/359 (14%), Positives = 101/359 (28%), Gaps = 75/359 (20%)
Query: 16 NPGLITINLNANPIQPVEGAFLVAR-------SLLYLYMQECTLSKINPQFF-----TNL 63
G+ +++L+ N + + + S+ L + +L N
Sbjct: 21 PHGVTSLDLSLNNLYS-ISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP 79
Query: 64 TTLNKLDLSGNPL-----RIIEPGVFDPLTSLEYLMLNRCNLT-----YISPSAFDNLNH 113
+ L+LSGN L + + ++ L L + + + +
Sbjct: 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPAS 139
Query: 114 LKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENE 173
+ +L L N L L + A + +LNL N
Sbjct: 140 ITSLNLRGNDLGI---------------------KSSDELIQILAAIPANVNSLNLRGNN 178
Query: 174 LID---LDVATTLGQNLVHLDSLDLSNCHL--KG--PLSEDAFVNATKLRTLYLSGNPLS 226
L ++A L + SLDLS L K L+ + +L L N L
Sbjct: 179 LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238
Query: 227 ---AADLSVALKPLTKLHRLSLRNCGLSRLP-------ANTFHRFTCLQELDISHNPLID 276
+L + L L + L + + F + +D + +
Sbjct: 239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298
Query: 277 AFTALLSPLESLEHLDMGYSNLQRISRSTFLKM------------TSLKTLILSGNKLE 323
+ + +S + L +++ L+ I + L
Sbjct: 299 SHSIPIS--NLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLL 355
Score = 78.6 bits (194), Expect = 9e-16
Identities = 52/364 (14%), Positives = 104/364 (28%), Gaps = 71/364 (19%)
Query: 159 ANNTWLRNLNLAENELIDLDV---ATTLGQNLVHLDSLDLSNCHLKGP----LSEDAFVN 211
+ + +L+L+ N L + + SL+LS L L +
Sbjct: 19 SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI 78
Query: 212 ATKLRTLYLSGNPLS---AADLSVALK-PLTKLHRLSLRNCGLSRLPANTF-----HRFT 262
+ +L LSGN LS + +L L + L L S ++ F +
Sbjct: 79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPA 138
Query: 263 CLQELDISHNPLIDA-----FTALLSPLESLEHLDMGYSNL-----QRISRSTFLKMTSL 312
+ L++ N L L + ++ L++ +NL +++ S+
Sbjct: 139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASV 198
Query: 313 KTLILSGNKL-----ETLESGLFQNLTHLSVLELNNCGLTRLN----ETVFHENYTYPDL 363
+L LS N L L H+ L L L + + + L
Sbjct: 199 TSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKH---L 255
Query: 364 EELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELR 423
+ + L + + + + P + + +
Sbjct: 256 QTVYLDYDIVKNMSKEQCKALGAAFPN---------------IQK----------IILVD 290
Query: 424 LSGNPLH---VLPTGNLLPPQLSRLRSLDLSRCKIDY-----LPPNVFNNTRNITSLNLA 475
+G +H +P NL+ + L + + N +
Sbjct: 291 KNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQT 350
Query: 476 NNNL 479
L
Sbjct: 351 CKPL 354
Score = 71.3 bits (175), Expect = 2e-13
Identities = 53/309 (17%), Positives = 98/309 (31%), Gaps = 78/309 (25%)
Query: 262 TCLQELDISHNPLIDA-----FTALLSPLESLEHLDMGYSNL-----QRISRSTFLKMTS 311
+ LD+S N L A + S+ L++ ++L + + +
Sbjct: 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81
Query: 312 LKTLILSGNKL-----ETLESGLFQNLTHLSVLELNNCGLT-----RLNETVFHENYTYP 361
+ +L LSGN L + L L ++VL+L + + + +
Sbjct: 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPAS-- 139
Query: 362 DLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEE 421
+ L L GN L S+ + L + + +
Sbjct: 140 -ITSLNLRGNDLG--IKSSDE----------------------LIQILAAIPAN---VNS 171
Query: 422 LRLSGNPL---------HVLPTGNLLPPQLSRLRSLDLSRCKID-----YLPPNVFNNTR 467
L L GN L L + + + SLDLS + L +
Sbjct: 172 LNLRGNNLASKNCAELAKFLASIP------ASVTSLDLSANLLGLKSYAELAYIFSSIPN 225
Query: 468 NITSLNLANNNLSMTSELSF-QFLDVLLELESLDLSNNNLTHISP-------TVLRHNRA 519
++ SLNL N L S + D L L+++ L + + ++S + +
Sbjct: 226 HVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQK 285
Query: 520 ITSIKLVGN 528
I + G
Sbjct: 286 IILVDKNGK 294
Score = 48.2 bits (115), Expect = 6e-06
Identities = 46/245 (18%), Positives = 74/245 (30%), Gaps = 55/245 (22%)
Query: 310 TSLKTLILSGNKL-----ETLESGLFQNLTHLSVLELNNCGLT-----RLNETVFHENYT 359
+ +L LS N L L ++ L L+ L L + +
Sbjct: 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81
Query: 360 YPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDL 419
+ L LSGN L + L +T+ +T +
Sbjct: 82 ---VTSLNLSGNFLS---YKSSDE---------------------LVKTLAAIPFT---I 111
Query: 420 EELRLSGNPL---HVLPTGNLLPPQLSRLRSLDLSRCKID-----YLPPNVFNNTRNITS 471
L L N + + SL+L + L + N+ S
Sbjct: 112 TVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNS 171
Query: 472 LNLANNNLSMT--SELSFQFLDVLLELESLDLSNNNLTH-----ISPTVLRHNRAITSIK 524
LNL NNL+ +EL+ + + SLDLS N L ++ + S+
Sbjct: 172 LNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLN 231
Query: 525 LVGNP 529
L N
Sbjct: 232 LCLNC 236
Score = 46.2 bits (110), Expect = 2e-05
Identities = 28/197 (14%), Positives = 63/197 (31%), Gaps = 36/197 (18%)
Query: 16 NPGLITINLNANPIQPVEGAFLVAR-------SLLYLYMQECTL-----SKINPQFFTNL 63
+ ++NL N + + +A+ S+ L + L +++ F +
Sbjct: 166 PANVNSLNLRGNNLAS-KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIP 224
Query: 64 TTLNKLDLSGNPLRIIEPGV------FDPLTSLEYLMLNRCNLTYISP-------SAFDN 110
+ L+L N L P + D L L+ + L+ + +S +AF N
Sbjct: 225 NHVVSLNLCLNCLH--GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPN 282
Query: 111 LNHLKTLELSQNKLKSHIDWTL--VLGNLG-KLDTLDLRQSGIS-----NLPDNVFANNT 162
+ + ++ + ++ + ++ L K D L +
Sbjct: 283 IQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPD 342
Query: 163 WLRNLNLAENELIDLDV 179
LR L++
Sbjct: 343 ELRESIQTCKPLLEHHH 359
Score = 34.7 bits (80), Expect = 0.087
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 465 NTRNITSLNLANNNLS--MTSELSFQFLDVLLELESLDLSNNNLT-----HISPTVLRHN 517
+TSL+L+ NNL T EL F + + SL+LS N+L + +
Sbjct: 20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP 79
Query: 518 RAITSIKLVGN 528
+TS+ L GN
Sbjct: 80 ANVTSLNLSGN 90
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 88.5 bits (220), Expect = 9e-20
Identities = 45/215 (20%), Positives = 78/215 (36%), Gaps = 21/215 (9%)
Query: 62 NLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQ 121
L K +L + + L+ ++ + N+ ++ +LK L LS
Sbjct: 17 GLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSH 72
Query: 122 NKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVAT 181
N++ + L +L KL+ L + ++ + NL + L L L NEL D D
Sbjct: 73 NQISD-LS---PLKDLTKLEELSVNRNRLKNLN---GIPSACLSRLFLDNNELRDTDSL- 124
Query: 182 TLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLH 241
+L +L+ L + N LK S +KL L L GN ++ + L L K++
Sbjct: 125 ---IHLKNLEILSIRNNKLK---SIVMLGFLSKLEVLDLHGNEIT--NTG-GLTRLKKVN 175
Query: 242 RLSLRNCGLSRLPANTFHRFTCLQELDISHNPLID 276
+ L P + I
Sbjct: 176 WIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWIS 210
Score = 76.6 bits (189), Expect = 1e-15
Identities = 51/280 (18%), Positives = 90/280 (32%), Gaps = 57/280 (20%)
Query: 211 NATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDIS 270
L ++ DL + K L+ + + N + L FT L+EL +S
Sbjct: 17 GLANAVKQNLGKQSVT--DLV-SQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLS 71
Query: 271 HNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLF 330
HN + D + L L LE L + + L+ ++ + L L L N+L +S
Sbjct: 72 HNQISD--LSPLKDLTKLEELSVNRNRLKNLN---GIPSACLSRLFLDNNELRDTDS--L 124
Query: 331 QNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPT 390
+L +L +L + N L + F LE L L GN + T+
Sbjct: 125 IHLKNLEILSIRNNKLKSIVMLGFLSK-----LEVLDLHGNEITNTGGLTR--------- 170
Query: 391 QIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDL 450
+ + L+G N L +
Sbjct: 171 -------------------------LKKVNWIDLTGQKCV-----NEPVKYQPELYITNT 200
Query: 451 SRC-KIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQF 489
+ ++ P +N + + T E+S++F
Sbjct: 201 VKDPDGRWISPYYISNGGSYVDGCVLWELPVYTDEVSYKF 240
Score = 70.4 bits (173), Expect = 1e-13
Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 16/177 (9%)
Query: 17 PGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPL 76
G+ N + + IQ + G +L L++ +S ++P +LT L +L ++ N L
Sbjct: 41 SGVQNFNGDNSNIQSLAG-MQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRL 97
Query: 77 RIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGN 136
+ + P L L L+ L +L +L+ L + NKLKS I +LG
Sbjct: 98 KNLNGI---PSACLSRLFLDNNELRDTDS--LIHLKNLEILSIRNNKLKS-IV---MLGF 148
Query: 137 LGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSL 193
L KL+ LDL + I+N + ++L + ++ V L +++
Sbjct: 149 LSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQKCVNEPV--KYQPELYITNTV 201
Score = 66.2 bits (162), Expect = 3e-12
Identities = 33/243 (13%), Positives = 73/243 (30%), Gaps = 55/243 (22%)
Query: 282 LSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLEL 341
L + ++G ++ + + +++ ++ + +++L Q T+L L L
Sbjct: 15 DPGLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHL 70
Query: 342 NNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVI 401
++ ++ L+ LEEL ++ N L L
Sbjct: 71 SHNQISDLSPLKDLTK-----LEELSVNRNRLKNL------------------------- 100
Query: 402 LFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPN 461
L L L N L + L L L + K+ +
Sbjct: 101 ----------NGIPSACLSRLFLDNNELRDTDSLI----HLKNLEILSIRNNKLKSIVM- 145
Query: 462 VFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAIT 521
+ L+L N ++ + L L ++ +DL+ +
Sbjct: 146 -LGFLSKLEVLDLHGNEIT-----NTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITN 199
Query: 522 SIK 524
++K
Sbjct: 200 TVK 202
Score = 62.0 bits (151), Expect = 8e-11
Identities = 34/163 (20%), Positives = 56/163 (34%), Gaps = 14/163 (8%)
Query: 17 PGLITINLNANPIQPVEG-AFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP 75
L ++L+ N I + L L L + L +N L++L L N
Sbjct: 63 TNLKELHLSHNQISDLSPLKDLT--KLEELSVNRNRLKNLNG---IPSACLSRLFLDNNE 117
Query: 76 LRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLG 135
LR + L +LE L + L I L+ L+ L+L N++ + L
Sbjct: 118 LRDTDS--LIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNTGG----LT 169
Query: 136 NLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLD 178
L K++ +DL N P + + I
Sbjct: 170 RLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPY 212
Score = 56.2 bits (136), Expect = 9e-09
Identities = 40/223 (17%), Positives = 65/223 (29%), Gaps = 49/223 (21%)
Query: 315 LILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLH 374
I + + L + L +T L V + + ++ + +
Sbjct: 2 SIQRPTPINQVFP--DPGLANAVKQNLGKQSVTDL---VSQKELSG--VQNFNGDNSNIQ 54
Query: 375 VLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENY--------TYPDLEELRLSG 426
L F L L+ N LEEL ++
Sbjct: 55 SL-----------------AGMQFFTNLKELH---LSHNQISDLSPLKDLTKLEELSVNR 94
Query: 427 NPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELS 486
N L L L L L ++ + +N+ L++ NN L S
Sbjct: 95 NRLKNLNGIPSA-----CLSRLFLDNNELRDTDS--LIHLKNLEILSIRNNKLK-----S 142
Query: 487 FQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNP 529
L L +LE LDL N +T+ L + + I L G
Sbjct: 143 IVMLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQK 183
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 86.6 bits (215), Expect = 1e-19
Identities = 29/169 (17%), Positives = 61/169 (36%), Gaps = 16/169 (9%)
Query: 60 FTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLEL 119
+ +L + L+ + + + +++ L +N + T +P L++L+ L +
Sbjct: 40 EAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRI 95
Query: 120 SQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDV 179
+ S D L L L LD+ S + + +++L+ N I
Sbjct: 96 MGKDVTS--DKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI---- 149
Query: 180 ATTLG--QNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLS 226
T + + L L SL++ + + KL LY +
Sbjct: 150 -TDIMPLKTLPELKSLNIQFDGVH---DYRGIEDFPKLNQLYAFSQTIG 194
Score = 80.0 bits (198), Expect = 2e-17
Identities = 33/193 (17%), Positives = 66/193 (34%), Gaps = 18/193 (9%)
Query: 136 NLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDL 195
L QS +N+ + + L + LA + DL T + + ++ L +
Sbjct: 21 TFKAYLNGLLGQSSTANITEAQMNS---LTYITLANINVTDL---TGI-EYAHNIKDLTI 73
Query: 196 SNCHLK--GPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRL 253
+N H P+S + L L + G +++ + L LT L L + +
Sbjct: 74 NNIHATNYNPIS-----GLSNLERLRIMGKDVTSDKIP-NLSGLTSLTLLDISHSAHDDS 127
Query: 254 PANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLK 313
+ + +D+S+N I L L L+ L++ + + L
Sbjct: 128 ILTKINTLPKVNSIDLSYNGAITDIMPL-KTLPELKSLNIQFDGVHDYR--GIEDFPKLN 184
Query: 314 TLILSGNKLETLE 326
L + +
Sbjct: 185 QLYAFSQTIGGKK 197
Score = 78.1 bits (193), Expect = 1e-16
Identities = 29/159 (18%), Positives = 59/159 (37%), Gaps = 8/159 (5%)
Query: 19 LITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRI 78
L I L + + G A ++ L + + NP + L+ L +L + G +
Sbjct: 46 LTYITLANINVTDLTG-IEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTS 102
Query: 79 IEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLG 138
+ LTSL L ++ + + L + +++LS N + I L L
Sbjct: 103 DKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM---PLKTLP 159
Query: 139 KLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDL 177
+L +L+++ G+ + + L L +
Sbjct: 160 ELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGGK 196
Score = 75.4 bits (186), Expect = 8e-16
Identities = 28/191 (14%), Positives = 72/191 (37%), Gaps = 16/191 (8%)
Query: 61 TNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELS 120
+ L + I + SL Y+ L N+T ++ + +++K L ++
Sbjct: 20 STFKAYLNGLLGQSSTANITEA---QMNSLTYITLANINVTDLTG--IEYAHNIKDLTIN 74
Query: 121 QNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVA 180
++ + + L L+ L + +++ + T L L+++ + D +
Sbjct: 75 NIHA-TNYN---PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130
Query: 181 TTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKL 240
L ++S+DLS + +L++L + + + D ++ KL
Sbjct: 131 KI--NTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVH--DYR-GIEDFPKL 183
Query: 241 HRLSLRNCGLS 251
++L + +
Sbjct: 184 NQLYAFSQTIG 194
Score = 72.3 bits (178), Expect = 9e-15
Identities = 36/224 (16%), Positives = 69/224 (30%), Gaps = 44/224 (19%)
Query: 150 ISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAF 209
N+PD+ F N L ++ ++ A + L + L+N ++
Sbjct: 14 NVNIPDSTFKA---YLNGLLGQSSTANITEA-----QMNSLTYITLANINVT---DLTGI 62
Query: 210 VNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDI 269
A ++ L ++ + P++ L + L+ L I
Sbjct: 63 EYAHNIKDLTINNIHATN------YNPISGL---------------------SNLERLRI 95
Query: 270 SHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGL 329
+ LS L SL LD+ +S + + + ++ LS N T L
Sbjct: 96 MGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPL 155
Query: 330 FQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPL 373
+ L L L + G+ L +L +
Sbjct: 156 -KTLPELKSLNIQFDGVHDYRGIEDFPK-----LNQLYAFSQTI 193
Score = 60.0 bits (146), Expect = 2e-10
Identities = 36/227 (15%), Positives = 68/227 (29%), Gaps = 49/227 (21%)
Query: 284 PLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNN 343
P + + G + T +M SL + L+ + L + ++ L +NN
Sbjct: 18 PDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINN 75
Query: 344 CGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILF 403
T N N LE LR+ G + + N L
Sbjct: 76 IHATNYNPISGLSN-----LERLRIMGKD---------------VTSDKIPNLSGL---- 111
Query: 404 ILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRC-KIDYLPPNV 462
L L +S + + L ++ S+DLS I + P
Sbjct: 112 -------------TSLTLLDISHSAHDDSILTKIN--TLPKVNSIDLSYNGAITDIMP-- 154
Query: 463 FNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHI 509
+ SLN+ + + ++ ++ +L L + +
Sbjct: 155 LKTLPELKSLNIQFDGVH-----DYRGIEDFPKLNQLYAFSQTIGGK 196
Score = 46.9 bits (112), Expect = 5e-06
Identities = 18/111 (16%), Positives = 46/111 (41%), Gaps = 10/111 (9%)
Query: 419 LEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNN 478
+++L ++ + LS L L + + + ++T L+++++
Sbjct: 68 IKDLTINNIHATNY--NPI--SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA 123
Query: 479 LSMTSELSFQFLDVLLELESLDLSNNN-LTHISPTVLRHNRAITSIKLVGN 528
+ ++ L ++ S+DLS N +T I P L+ + S+ + +
Sbjct: 124 H---DDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFD 169
Score = 45.7 bits (109), Expect = 1e-05
Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 7/100 (7%)
Query: 429 LHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQ 488
L T N+ Q++ L + L+ + L NI L + N + + + +S
Sbjct: 30 LGQSSTANITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNYNPISG- 86
Query: 489 FLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGN 528
L LE L + ++T L ++T + + +
Sbjct: 87 ----LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122
Score = 38.4 bits (90), Expect = 0.003
Identities = 11/89 (12%), Positives = 34/89 (38%), Gaps = 10/89 (11%)
Query: 440 PQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESL 499
+ L + + ++T + LAN N++ ++ ++ L
Sbjct: 20 STFKAYLNGLLGQSSTANITEA---QMNSLTYITLANINVT-----DLTGIEYAHNIKDL 71
Query: 500 DLSNNNLTHISPTVLRHNRAITSIKLVGN 528
++N + T+ +P + + ++++G
Sbjct: 72 TINNIHATNYNP--ISGLSNLERLRIMGK 98
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 84.4 bits (210), Expect = 3e-19
Identities = 33/170 (19%), Positives = 55/170 (32%), Gaps = 16/170 (9%)
Query: 213 TKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHN 272
+ L L+ L A+ L + +L L+RL A +L +
Sbjct: 4 PEKSKLQEIYQELTR--LKAAVGELPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQ 60
Query: 273 PLIDAFTAL---LSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGL 329
L T L + L L Y L R+ + ++ L +L L++ +
Sbjct: 61 EL----TRLKAAVGELPEKSKLQEIYQELTRLK-AAVGELPEKSKLQEIYQELTELKAAV 115
Query: 330 FQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDS 379
L S L+ LT+L V PD + + L L +
Sbjct: 116 G-ELPEKSKLQEIYQELTQLKAAVGE----LPDQSKQQQIYQELTDLKTA 160
Score = 79.0 bits (196), Expect = 2e-17
Identities = 29/169 (17%), Positives = 44/169 (26%), Gaps = 17/169 (10%)
Query: 62 NLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQ 121
L +KL L ++ V + L L LT + +A L L+
Sbjct: 2 ELPEKSKLQEIYQELTRLKAAVGE-LPEKSKLQEIYQELTRL-KAAVGELPEKSKLQEIY 59
Query: 122 NKLKSHIDWTL--VLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDV 179
+L L +G L + L ++ L V L EL +L
Sbjct: 60 QELTR-----LKAAVGELPEKSKLQEIYQELTRLKAAVG-ELPEKSKLQEIYQELTELK- 112
Query: 180 ATTLGQNLVHLDSLDLSNCHLKG-PLSEDAFVNATKLRTLYLSGNPLSA 227
+G L L L A L+
Sbjct: 113 -AAVG-ELPEKSKLQEIYQELTQLK---AAVGELPDQSKQQQIYQELTD 156
Score = 75.2 bits (186), Expect = 5e-16
Identities = 29/146 (19%), Positives = 49/146 (33%), Gaps = 14/146 (9%)
Query: 237 LTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTAL---LSPLESLEHLDM 293
L + +L L+RL A +L + L T L + L L
Sbjct: 3 LPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQEL----TRLKAAVGELPEKSKLQE 57
Query: 294 GYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETV 353
Y L R+ + ++ L +L L++ + + L S L+ LT L V
Sbjct: 58 IYQELTRLKAA-VGELPEKSKLQEIYQELTRLKAAVGE-LPEKSKLQEIYQELTELKAAV 115
Query: 354 FHENYTYPDLEELRLSGNPLHVLPDS 379
P+ +L+ L L +
Sbjct: 116 GE----LPEKSKLQEIYQELTQLKAA 137
Score = 71.7 bits (177), Expect = 8e-15
Identities = 29/195 (14%), Positives = 47/195 (24%), Gaps = 42/195 (21%)
Query: 135 GNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLD 194
G L + L ++ L V L L
Sbjct: 1 GELPEKSKLQEIYQELTRLKAAV---------------------------GELPEKSKLQ 33
Query: 195 LSNCHLKG-PLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRL 253
L A + L L+ L A+ L + +L L+RL
Sbjct: 34 EIYQELTRLK---AAVGELPEKSKLQEIYQELT--RLKAAVGELPEKSKLQEIYQELTRL 88
Query: 254 PANTFHRFTCLQELDISHNPLIDAFTAL---LSPLESLEHLDMGYSNLQRISRSTFLKMT 310
A +L + L T L + L L Y L ++ + ++
Sbjct: 89 KA-AVGELPEKSKLQEIYQEL----TELKAAVGELPEKSKLQEIYQELTQLK-AAVGELP 142
Query: 311 SLKTLILSGNKLETL 325
+L L
Sbjct: 143 DQSKQQQIYQELTDL 157
Score = 68.6 bits (169), Expect = 1e-13
Identities = 30/214 (14%), Positives = 53/214 (24%), Gaps = 53/214 (24%)
Query: 260 RFTCLQELDISHNPLIDAFTAL---LSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLI 316
+L + L T L + L L Y L R+ + ++ L
Sbjct: 2 ELPEKSKLQEIYQEL----TRLKAAVGELPEKSKLQEIYQELTRLK-AAVGELPEKSKLQ 56
Query: 317 LSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVL 376
+L L++ + + L S L+ LTRL V P+ +L+ L L
Sbjct: 57 EIYQELTRLKAAVGE-LPEKSKLQEIYQELTRLKAAVGE----LPEKSKLQEIYQELTEL 111
Query: 377 PDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPT-- 434
+ + +L+ L L
Sbjct: 112 KAAVGE----------LPE-----------------------KSKLQEIYQELTQLKAAV 138
Query: 435 GNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRN 468
G L ++ L +
Sbjct: 139 GEL-----PDQSKQQQIYQELTDLKTAFERLGHH 167
Score = 67.9 bits (167), Expect = 2e-13
Identities = 32/215 (14%), Positives = 57/215 (26%), Gaps = 54/215 (25%)
Query: 308 KMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELR 367
++ L +L L++ + L S L+ LTRL V P+ +L+
Sbjct: 2 ELPEKSKLQEIYQELTRLKAAV-GELPEKSKLQEIYQELTRLKAAV----GELPEKSKLQ 56
Query: 368 LSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGN 427
L L + + L P+ +L+
Sbjct: 57 EIYQELTRLKAAVGE----------------------L-----------PEKSKLQEIYQ 83
Query: 428 PLHVLPT--GNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNL-SMTSE 484
L L G +L L ++ L V + L L + +
Sbjct: 84 ELTRLKAAVG-----ELPEKSKLQEIYQELTELKAAVGELP-EKSKLQEIYQELTQLKAA 137
Query: 485 LSFQFLDVLLELESLDLSNNNLTHISPTV--LRHN 517
+ L + LT + L H+
Sbjct: 138 VGE-----LPDQSKQQQIYQELTDLKTAFERLGHH 167
Score = 67.1 bits (165), Expect = 3e-13
Identities = 24/140 (17%), Positives = 37/140 (26%), Gaps = 11/140 (7%)
Query: 40 RSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCN 99
L L+++ L +KL L + L L
Sbjct: 27 PEKSKLQEIYQELTRL-KAAVGELPEKSKLQEIYQELTRL-KAAVGELPEKSKLQEIYQE 84
Query: 100 LTYISPSAFDNLNHLKTLELSQNKLKSHIDWTL--VLGNLGKLDTLDLRQSGISNLPDNV 157
LT + +A L L+ +L L +G L + L ++ L V
Sbjct: 85 LTRL-KAAVGELPEKSKLQEIYQELTE-----LKAAVGELPEKSKLQEIYQELTQLKAAV 138
Query: 158 FANNTWLRNLNLAENELIDL 177
EL DL
Sbjct: 139 -GELPDQSKQQQIYQELTDL 157
Score = 61.7 bits (151), Expect = 3e-11
Identities = 19/120 (15%), Positives = 34/120 (28%), Gaps = 10/120 (8%)
Query: 40 RSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCN 99
L L+++ L +KL L ++ V + L L
Sbjct: 50 PEKSKLQEIYQELTRL-KAAVGELPEKSKLQEIYQELTRLKAAVGE-LPEKSKLQEIYQE 107
Query: 100 LTYISPSAFDNLNHLKTLELSQNKLKSHIDWTL--VLGNLGKLDTLDLRQSGISNLPDNV 157
LT + +A L L+ +L L +G L +++L
Sbjct: 108 LTEL-KAAVGELPEKSKLQEIYQELTQ-----LKAAVGELPDQSKQQQIYQELTDLKTAF 161
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 85.8 bits (213), Expect = 1e-18
Identities = 58/213 (27%), Positives = 89/213 (41%), Gaps = 18/213 (8%)
Query: 64 TTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNK 123
K +L + + L S++ ++ N ++ S L +++ L L NK
Sbjct: 19 AETIKANLKKKSVTDAVT--QNELNSIDQIIANNSDIK--SVQGIQYLPNVRYLALGGNK 74
Query: 124 LKSHIDWTLVLG---NLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVA 180
L + L L L L + + +LP+ VF T L+ L L EN+L L
Sbjct: 75 LHD-------ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDG 127
Query: 181 TTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKL 240
+ L +L L+L++ L+ L + F T L L LS N L + V K LT+L
Sbjct: 128 --VFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK-LTQL 183
Query: 241 HRLSLRNCGLSRLPANTFHRFTCLQELDISHNP 273
L L L +P F R T LQ + + NP
Sbjct: 184 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216
Score = 81.2 bits (201), Expect = 4e-17
Identities = 67/237 (28%), Positives = 97/237 (40%), Gaps = 40/237 (16%)
Query: 142 TLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLK 201
T+ + PD+ FA NL + + D L +D + +N +K
Sbjct: 2 TITVSTPIKQIFPDDAFAETI---KANLKKKSVTDAVT----QNELNSIDQIIANNSDIK 54
Query: 202 GPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRF 261
S +R L L GN L +S LK LT L L L L LP F +
Sbjct: 55 ---SVQGIQYLPNVRYLALGGNKLHD--ISA-LKELTNLTYLILTGNQLQSLPNGVFDKL 108
Query: 262 TCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNK 321
T L+EL + N LQ + F K+T+L L L+ N+
Sbjct: 109 TNLKELVLVEN------------------------QLQSLPDGVFDKLTNLTYLNLAHNQ 144
Query: 322 LETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPD 378
L++L G+F LT+L+ L+L+ L L E VF + L++LRL N L +PD
Sbjct: 145 LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK---LTQLKDLRLYQNQLKSVPD 198
Score = 80.4 bits (199), Expect = 6e-17
Identities = 51/157 (32%), Positives = 75/157 (47%), Gaps = 9/157 (5%)
Query: 19 LITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRI 78
+ + L N + + A +L YL + L + F LT L +L L N L+
Sbjct: 65 VRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS 123
Query: 79 IEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTL---VLG 135
+ GVFD LT+L YL L L + FD L +L L+LS N+L+S L V
Sbjct: 124 LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-----LPEGVFD 178
Query: 136 NLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAEN 172
L +L L L Q+ + ++PD VF T L+ + L +N
Sbjct: 179 KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
Score = 80.1 bits (198), Expect = 8e-17
Identities = 60/249 (24%), Positives = 100/249 (40%), Gaps = 46/249 (18%)
Query: 287 SLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGL 346
++ ++ T ++ S+ +I + + +++++ Q L ++ L L L
Sbjct: 20 ETIKANLKKKSVT--DAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKL 75
Query: 347 TRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILN 406
++ E +L L L+GN L LP+ FD L
Sbjct: 76 HDIS--ALKE---LTNLTYLILTGNQLQSLPNGV---------------FDKLT------ 109
Query: 407 ETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNT 466
+L+EL L N L LP G + +L+ L L+L+ ++ LP VF+
Sbjct: 110 -----------NLKELVLVENQLQSLPDG--VFDKLTNLTYLNLAHNQLQSLPKGVFDKL 156
Query: 467 RNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLV 526
N+T L+L+ N L E F D L +L+ L L N L + V ++ I L
Sbjct: 157 TNLTELDLSYNQLQSLPEGVF---DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH 213
Query: 527 GNPWKCDCN 535
NPW C C
Sbjct: 214 DNPWDCTCP 222
Score = 77.7 bits (192), Expect = 6e-16
Identities = 57/231 (24%), Positives = 88/231 (38%), Gaps = 40/231 (17%)
Query: 115 KTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENEL 174
L + + + L +D + S I ++ +R L L N+L
Sbjct: 22 IKANLKKKSVTD----AVTQNELNSIDQIIANNSDIKSVQ--GIQYLPNVRYLALGGNKL 75
Query: 175 IDLDVATTLG--QNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSV 232
+ + L +L L L+ L+ L F T L+ L L N L + V
Sbjct: 76 ------HDISALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGV 128
Query: 233 ALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLD 292
LT L L+L + L LP F + T L ELD+S+N
Sbjct: 129 -FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-------------------- 167
Query: 293 MGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNN 343
LQ + F K+T LK L L N+L+++ G+F LT L + L++
Sbjct: 168 ----QLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD 214
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 86.5 bits (214), Expect = 1e-18
Identities = 53/328 (16%), Positives = 90/328 (27%), Gaps = 63/328 (19%)
Query: 186 NLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPL--TKLHRL 243
L+ L + + L+ L + + + L AL+ L + L L
Sbjct: 41 GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100
Query: 244 SLRNCGLSRLPANTFHRFTC--LQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRI 301
+L N ++ T L L++ + +
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT--------------------RDAWL 140
Query: 302 SRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLEL-NNCGLTRLNETVFHENYTY 360
+ LK L ++ + LS L+L +N L +
Sbjct: 141 AELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF 200
Query: 361 PDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLE 420
P L+ L L M T L+
Sbjct: 201 PTLQVLALRNA------------GMETPSGVCSALAAAR-----------------VQLQ 231
Query: 421 ELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLS 480
L LS N L G S+L SL+LS + +P + ++ L+L+ N L
Sbjct: 232 GLDLSHNSLRDAA-GAPSCDWPSQLNSLNLSFTGLKQVPKGLP---AKLSVLDLSYNRLD 287
Query: 481 MTSELSFQFLDVLLELESLDLSNNNLTH 508
D L ++ +L L N
Sbjct: 288 -----RNPSPDELPQVGNLSLKGNPFLD 310
Score = 86.5 bits (214), Expect = 1e-18
Identities = 52/297 (17%), Positives = 84/297 (28%), Gaps = 30/297 (10%)
Query: 98 CNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNV 157
CN + P N L ++ L G L +
Sbjct: 15 CNFSDPKPDWSSAFNCLGAADVE-----------LYGGGRSLEYLLKRVDTEADLGQFTD 63
Query: 158 FANNTWLRNLNLAENELIDLDVATTLG-QNLVHLDSLDLSNCHLKGP-LSEDAFVNATKL 215
+ L+ L + + + L + L L L N + G L
Sbjct: 64 IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDL 123
Query: 216 RTLYLSGNPLSAADLSVALKP---LTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHN 272
L L + D +A L LS+ F L LD+S N
Sbjct: 124 NILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDN 183
Query: 273 PLIDAFTAL-------LSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKL-ET 324
P + + L+ L + G + + L+ L LS N L +
Sbjct: 184 PELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA 243
Query: 325 LESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTK 381
+ + L+ L L+ GL ++ + + L L LS N L P +
Sbjct: 244 AGAPSCDWPSQLNSLNLSFTGLKQVPKGLP------AKLSVLDLSYNRLDRNPSPDE 294
Score = 83.0 bits (205), Expect = 1e-17
Identities = 55/295 (18%), Positives = 96/295 (32%), Gaps = 41/295 (13%)
Query: 40 RSLLYLYMQECTLSKINPQF-FTNLTTLNKLDLSGNPL---RIIEPGVFDPLTSLEYLML 95
RSL YL + T + + +L +L + + + ++ L+ L L
Sbjct: 43 RSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTL 102
Query: 96 NRCNLTYISPSAFDNLNH--LKTLELSQNKLKSHIDWTLVLGNLGK--LDTLDLRQSGIS 151
+T +P L L L + W L K L L + Q+
Sbjct: 103 ENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL 162
Query: 152 NLPDNVFANNTWLRNLNLAENELIDLD--VATTLGQNLVHLDSLDLSNCHLK--GPLSED 207
N L L+L++N + ++ L L L N ++ +
Sbjct: 163 NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA 222
Query: 208 AFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQEL 267
+L+ L LS N L A + + ++L+ L+L GL ++P + L L
Sbjct: 223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAK---LSVL 279
Query: 268 DISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKL 322
D+S+N L R ++ + L L GN
Sbjct: 280 DLSYN------------------------RLDRNPS--PDELPQVGNLSLKGNPF 308
Score = 81.9 bits (202), Expect = 4e-17
Identities = 47/251 (18%), Positives = 74/251 (29%), Gaps = 37/251 (14%)
Query: 35 AFLVARSLLYLYMQECTLSKINPQ--FFTNLTTLNKLDLSGNPLRIIEPGVFD----PLT 88
L L L ++ ++ P LN L+L + + +
Sbjct: 90 RVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKP 149
Query: 89 SLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKS--HIDWTLVLGNLGKLDTLDLR 146
L+ L + + + S L TL+LS N + L L L LR
Sbjct: 150 GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALR 209
Query: 147 QSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSE 206
+G+ A L LDLS+ L+
Sbjct: 210 NAGMETPSGVCSALAAARVQLQ-----------------------GLDLSHNSLRDAAGA 246
Query: 207 DAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQE 266
+ ++L +L LS L V KL L L L R P+ +
Sbjct: 247 PSCDWPSQLNSLNLSFTGLK----QVPKGLPAKLSVLDLSYNRLDRNPS--PDELPQVGN 300
Query: 267 LDISHNPLIDA 277
L + NP +D+
Sbjct: 301 LSLKGNPFLDS 311
Score = 73.0 bits (179), Expect = 3e-14
Identities = 40/269 (14%), Positives = 77/269 (28%), Gaps = 25/269 (9%)
Query: 253 LPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSL 312
L L+ +D + L+ L + L ++ L
Sbjct: 38 LYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGL 97
Query: 313 KTLILSGNKL--ETLESGLFQNLTHLSVLELNNCGLTRLNETVFH-ENYTYPDLEELRLS 369
+ L L ++ L L++L L N + + + + P L+ L ++
Sbjct: 98 QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA 157
Query: 370 GNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVI---LFILNETVFHE--NYTYPDLEELRL 424
+++ L + + + +P L+ L L
Sbjct: 158 QAHSLNFSCEQ---------VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208
Query: 425 SGNPLHVLP-TGNLLPPQLSRLRSLDLSRCKIDYLPPNV-FNNTRNITSLNLANNNLSMT 482
+ + L +L+ LDLS + + + SLNL+ L
Sbjct: 209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV 268
Query: 483 SELSFQFLDVLLELESLDLSNNNLTHISP 511
+ +L LDLS N L
Sbjct: 269 PKGLPA------KLSVLDLSYNRLDRNPS 291
Score = 69.2 bits (169), Expect = 7e-13
Identities = 38/203 (18%), Positives = 66/203 (32%), Gaps = 20/203 (9%)
Query: 13 NLDNPGLITINLNANPIQPVEGAF-----LVARSLLYLYMQECTLSKINPQFFTNLTTLN 67
P L +NL + + L L + + + + L+
Sbjct: 117 EATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALS 176
Query: 68 KLDLSGNPLR----IIEPGVFDPLTSLEYLMLNRCNLTYIS---PSAFDNLNHLKTLELS 120
LDLS NP +I +L+ L L + S + L+ L+LS
Sbjct: 177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLS 236
Query: 121 QNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVA 180
N L+ +L++L+L +G+ +P + A L L+L+ N L
Sbjct: 237 HNSLRDAAG-APSCDWPSQLNSLNLSFTGLKQVPKGLPAK---LSVLDLSYNRLDRNP-- 290
Query: 181 TTLGQNLVHLDSLDLSNCHLKGP 203
L + +L L
Sbjct: 291 --SPDELPQVGNLSLKGNPFLDS 311
Score = 39.9 bits (93), Expect = 0.002
Identities = 24/136 (17%), Positives = 51/136 (37%), Gaps = 4/136 (2%)
Query: 398 FLVILFILNETVFHENYTYPDLEELRLSGNPL-HVLPTGNLLPPQLSRLRSLDLSRCKID 456
+ + F + L+ L + + + G L +S L+ L L ++
Sbjct: 49 LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108
Query: 457 Y--LPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLE-LESLDLSNNNLTHISPTV 513
PP + ++ LNL N + + + L L+ L ++ + + S
Sbjct: 109 GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ 168
Query: 514 LRHNRAITSIKLVGNP 529
+R A++++ L NP
Sbjct: 169 VRVFPALSTLDLSDNP 184
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin
ligase, SCF, protein binding; HET: OGK; 2.80A
{Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Length = 592
Score = 88.5 bits (219), Expect = 2e-18
Identities = 77/491 (15%), Positives = 153/491 (31%), Gaps = 60/491 (12%)
Query: 60 FTNLTTLNKLDLSGNP-------LRIIEPGVFDP--------LTSLEYLMLNRCNLT--Y 102
F NL L L G P + G P L L+ + R ++
Sbjct: 72 FPNLR---SLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLD 128
Query: 103 ISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFA--- 159
+ A + L+TL+L + + ++ + K+ TL + +S S
Sbjct: 129 LDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188
Query: 160 -NNTWLRNLNLAENELIDLDVA--TTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNA-TKL 215
+NT L LN E + T+ +N L S+ + + + + +
Sbjct: 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEF 248
Query: 216 RTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLI 275
L+ + + + L KL RL L G + +P F +++LD+ + L
Sbjct: 249 CGGSLNEDI-GMPEKYMNLVFPRKLCRLGLSYMGPNEMPIL-FPFAAQIRKLDLLYALLE 306
Query: 276 -DAFTALLSPLESLEHLDMGY----SNLQRISRSTFLKMTSLKTLILSGNKLETLESG-- 328
+ L+ +LE L+ L+ +++ LK L + E
Sbjct: 307 TEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQY----CKQLKRLRIERGADEQGMEDEE 362
Query: 329 ----------LFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSG-NPLHVLP 377
L Q L + + +T NE++ +L + RL + +
Sbjct: 363 GLVSQRGLIALAQGCQELEYMAVYVSDIT--NESLESIGTYLKNLCDFRLVLLDREERIT 420
Query: 378 DSTKQYSMRTIPTQIWKNFDFLVILF----ILNETVFHENYTYPDLEELRLSGNPLHVLP 433
D +R++ K + + + + P++ + L
Sbjct: 421 DLPLDNGVRSL-LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEG 479
Query: 434 TGNLLPPQLSRLRSLDLSRCKI-DYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDV 492
L+ L++ C + ++ L + SMT + Q
Sbjct: 480 LMEFSR-GCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARP 538
Query: 493 LLELESLDLSN 503
+E +
Sbjct: 539 YWNIELIPSRR 549
Score = 76.1 bits (187), Expect = 1e-14
Identities = 55/396 (13%), Positives = 113/396 (28%), Gaps = 48/396 (12%)
Query: 17 PGLITINLNANPIQPVEGAFLVA-----RSLLYLYMQECTLSKINPQ----FFTNLTTLN 67
+ T+ + + +G +L SL L +KI+P+ N +L
Sbjct: 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV 223
Query: 68 KLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSH 127
+ + + + G F +LE N P + NL + L
Sbjct: 224 SVKVGDFEI-LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP 282
Query: 128 IDWTLVLGNLGKLDTLDLRQ-SGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQN 186
+ ++ ++ LDL + + L L N + D + L Q
Sbjct: 283 NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEV-LAQY 340
Query: 187 LVHLDSLDLSNCH-------LKGPLSEDAFV----NATKLRTLYLSGNPL---SAADLSV 232
L L + +G +S+ + +L + + + + S +
Sbjct: 341 CKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT 400
Query: 233 ALKPLTKLHRLSLRNC------GLSRLPANTFHRFTCLQELDISHNPLI---DAFTALLS 283
LK L + L L + L+ + +
Sbjct: 401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ 460
Query: 284 PLESLEHLDMGYSN-----LQRISRSTFLKMTSLKTLILSGNKL--ETLESGLFQNLTHL 336
++ + +GY L SR +L+ L + G + + L L
Sbjct: 461 YSPNVRWMLLGYVGESDEGLMEFSRG----CPNLQKLEMRGCCFSERAIAA-AVTKLPSL 515
Query: 337 SVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNP 372
L + + + + Y ++E + P
Sbjct: 516 RYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVP 551
Score = 70.0 bits (171), Expect = 1e-12
Identities = 66/487 (13%), Positives = 140/487 (28%), Gaps = 74/487 (15%)
Query: 105 PSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWL 164
+L++L+L + + L+ N G T + + + N L
Sbjct: 66 DRLSRRFPNLRSLKLKGKPRAA--MFNLIPENWGGYVTPWVTE---------ISNNLRQL 114
Query: 165 RNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAF----VNATKLRTLYL 220
++++ + DLD+ L++L L C + D + K++TL +
Sbjct: 115 KSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG---FTTDGLLSIVTHCRKIKTLLM 171
Query: 221 SGNPLSAAD---LSVALKPLTKLHRLSLRNCGLSRLPANT----FHRFTCLQELDISHNP 273
+ S D L + T L L+ +++ L + +
Sbjct: 172 EESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE 231
Query: 274 LIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLES--GLFQ 331
+++ +LE G N ++ + + L G LF
Sbjct: 232 ILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFP 290
Query: 332 NLTHLSVLELNNC---------------GLTRLN-------ETVFHENYTYPDLEELRLS 369
+ L+L L L + L+ LR+
Sbjct: 291 FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIE 350
Query: 370 GNP-LHVLPDSTKQYSMRTIPTQIWKNFDFLVIL-----FILNETVFHENYTYPDLEELR 423
+ D S R + + + L + I NE++ +L + R
Sbjct: 351 RGADEQGMEDEEGLVSQRGL-IALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFR 409
Query: 424 LSG----NPLHVLPTGNLLPPQLS---RLRSLDLSRCKI---DYLPPNVFNNTRNITSLN 473
L + LP N + L +LR + D + + N+ +
Sbjct: 410 LVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWML 469
Query: 474 LANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHIS-PTVLRHNRAITSIKLVGNPWKC 532
L S + F L+ L++ + + + ++ + + G
Sbjct: 470 LGYVGESDEGLME--FSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQG----Y 523
Query: 533 DCNIADM 539
++
Sbjct: 524 RASMTGQ 530
Score = 54.2 bits (130), Expect = 9e-08
Identities = 35/299 (11%), Positives = 83/299 (27%), Gaps = 37/299 (12%)
Query: 17 PGLITINLNANPIQPVEGAFLVA--RSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGN 74
+ ++L ++ + L+ +L L + + L +L +
Sbjct: 293 AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERG 352
Query: 75 PLRIIEPGVFDPLT------------SLEYLMLNRCNLTYISPSAF-DNLNHLKTLELSQ 121
++ LEY+ + ++T S + L +L L
Sbjct: 353 ADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVL 412
Query: 122 NKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAEN-ELIDLDVA 180
+ I + + L + LR +
Sbjct: 413 LDREERITDLPLDNGVRSL---------LIGCKK--------LRRFAFYLRQGGLTDLGL 455
Query: 181 TTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKL 240
+ +GQ ++ + L + L+ L + G S ++ A+ L L
Sbjct: 456 SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSL 515
Query: 241 HRLSLRNCGLSRLPANTFHR---FTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYS 296
L ++ S + + ++ + P ++ + +E H+ YS
Sbjct: 516 RYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQ-QGEIREMEHPAHILAYYS 573
Score = 54.2 bits (130), Expect = 1e-07
Identities = 39/287 (13%), Positives = 81/287 (28%), Gaps = 16/287 (5%)
Query: 241 HRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQR 300
+++ C + P RF L+ L + P F L P ++ + +
Sbjct: 53 EHVTMALCY-TATPDRLSRRFPNLRSLKLKGKPRAAMFN--LIPENWGGYVTPWVTEI-- 107
Query: 301 ISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNC-GLTRLNETVFHENYT 359
+ LK + +I+S L+ L +L L L+ C G T + +
Sbjct: 108 SNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLK---LDKCSGFT--TDGLLSIVTH 162
Query: 360 YPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDL 419
++ L + + + + NF I + + L
Sbjct: 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSL 222
Query: 420 EELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNL 479
+++ + L L L+ R + L L+
Sbjct: 223 VSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSY--- 279
Query: 480 SMTSELSFQFLDVLLELESLDLSN-NNLTHISPTVLRHNRAITSIKL 525
M ++ LDL T T+++ + ++
Sbjct: 280 -MGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLET 325
Score = 51.1 bits (122), Expect = 8e-07
Identities = 60/406 (14%), Positives = 116/406 (28%), Gaps = 81/406 (19%)
Query: 161 NTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNC--------------HLKGPLSE 206
+ ++ +A D L + +L SL L P
Sbjct: 49 SETREHVTMALCYTATPD---RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVT 105
Query: 207 DAFVNATKLRTLYLSGNPLSAADL-SVALKPLTKLHRLSLRNC------GLSRLPANTFH 259
+ N +L++++ +S DL +A L L L C GL +
Sbjct: 106 EISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSI----VT 161
Query: 260 RFTCLQELDISHNPLID----AFTALLSPLESLEHLDMGYSNLQRIS----RSTFLKMTS 311
++ L + + + L SLE L+ + +IS + S
Sbjct: 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRS 221
Query: 312 LKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGN 371
L ++ + ++ L G F+ +L + + L L LS
Sbjct: 222 LVSVKVGDFEILELV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM 280
Query: 372 PLHVLPDSTKQYSMRTIPTQIWKNFDFLVIL-----FILNETVFHENYTYPDLEELRLSG 426
+ +P ++ + L + E P+LE L
Sbjct: 281 GPNEMPI-------------LFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN 327
Query: 427 ----NPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMT 482
L VL +L+ L + R + + + LA
Sbjct: 328 VIGDRGLEVLAQY------CKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG----- 376
Query: 483 SELSFQFLDVLLELESLDLSNNNLTHISPTVLRHN-RAITSIKLVG 527
ELE + + +++T+ S + + + +LV
Sbjct: 377 ----------CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVL 412
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 84.9 bits (211), Expect = 4e-18
Identities = 62/281 (22%), Positives = 102/281 (36%), Gaps = 23/281 (8%)
Query: 50 CTLSKINPQFFTNLTTLNKLDLSGNPLR---IIEPGVFDPLTSLEYLML-NRCNLTYISP 105
T + T +N LDLSG L I + + L L +L + NL P
Sbjct: 36 RTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIP 94
Query: 106 SAFDNLNHLKTLELSQNKLKSHI-DWTLVLGNLGKLDTLDLRQSGIS-NLPDNVFANNTW 163
A L L L ++ + I D+ L + L TLD + +S LP + ++
Sbjct: 95 PAIAKLTQLHYLYITHTNVSGAIPDF---LSQIKTLVTLDFSYNALSGTLPPS-ISSLPN 150
Query: 164 LRNLNLAENELIDLDVATTLGQNLVHLD-SLDLSNCHLKGPLSEDAFVNATKLRTLYLSG 222
L + N + + + G + L S+ +S L G + L + LS
Sbjct: 151 LVGITFDGNRISG-AIPDSYG-SFSKLFTSMTISRNRLTGKIPPT--FANLNLAFVDLSR 206
Query: 223 NPLSAADLSVALKPLTKLHRLSLRNCGLS-RLPANTFHRFTCLQELDISHNPLIDAFTAL 281
N L D SV ++ L L+ L L LD+ +N +
Sbjct: 207 NMLE-GDASVLFGSDKNTQKIHLAKNSLAFDLG--KVGLSKNLNGLDLRNNRIYGTLPQG 263
Query: 282 LSPLESLEHLDMGYSNLQ-RISRSTFLKMTSLKTLILSGNK 321
L+ L+ L L++ ++NL I + + + NK
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIPQG--GNLQRFDVSAYANNK 302
Score = 72.6 bits (179), Expect = 5e-14
Identities = 58/303 (19%), Positives = 101/303 (33%), Gaps = 54/303 (17%)
Query: 97 RCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLR---------Q 147
+ + L+LS L L NL L+ L +
Sbjct: 35 NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP 94
Query: 148 SGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSED 207
I+ L L L + + + L + L +LD S L G L
Sbjct: 95 PAIAKLTQ--------LHYLYITHTNVSG-AIPDFLS-QIKTLVTLDFSYNALSGTLPPS 144
Query: 208 AFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHR-LSLRNCGLS-RLPANTFHRFTCLQ 265
+ L + GN +S A + + +KL +++ L+ ++P TF L
Sbjct: 145 -ISSLPNLVGITFDGNRISGA-IPDSYGSFSKLFTSMTISRNRLTGKIPP-TFANLN-LA 200
Query: 266 ELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQ-RISRSTFLKMTSLKTLILSGNKLET 324
+D+S N L + L ++ + + + ++L + + +L L L N++
Sbjct: 201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK--VGLSKNLNGLDLRNNRI-- 256
Query: 325 LESGL----FQNLTHLSVLEL--NN-CG-------LTRLNETVFHENYTYPDLEELRLSG 370
G L L L + NN CG L R + + + N L G
Sbjct: 257 --YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANN--------KCLCG 306
Query: 371 NPL 373
+PL
Sbjct: 307 SPL 309
Score = 68.7 bits (169), Expect = 8e-13
Identities = 48/194 (24%), Positives = 85/194 (43%), Gaps = 20/194 (10%)
Query: 40 RSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPL--RIIEPGVFDPLTSLEYLMLNR 97
L YLY+ +S P F + + TL LD S N L + P L +L + +
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL--PPSISSLPNLVGITFDG 158
Query: 98 CNLTYISPSAFDNLNHLKT-LELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGIS-NLPD 155
++ P ++ + + L T + +S+N+L I T NL L +DL ++ + +
Sbjct: 159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT--FANL-NLAFVDLSRNMLEGDASV 215
Query: 156 NVFANNTWLRNLNLAENEL---IDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNA 212
F ++ + ++LA+N L + +G +L+ LDL N + G L +
Sbjct: 216 L-FGSDKNTQKIHLAKNSLAFDL-----GKVG-LSKNLNGLDLRNNRIYGTLPQG-LTQL 267
Query: 213 TKLRTLYLSGNPLS 226
L +L +S N L
Sbjct: 268 KFLHSLNVSFNNLC 281
Score = 61.0 bits (149), Expect = 3e-10
Identities = 52/274 (18%), Positives = 88/274 (32%), Gaps = 82/274 (29%)
Query: 256 NTFHRFTCLQELDISHNPLIDAFTALLSP----LESLEHLDMGYSNLQRISR---STFLK 308
+T + + LD+S L + L L L +G N + K
Sbjct: 44 DTDTQTYRVNNLDLSGLNL--PKPYPIPSSLANLPYLNFLYIGGIN--NLVGPIPPAIAK 99
Query: 309 MTSLKTLILSGNKLETLESGL----FQNLTHLSVLELNNCGLT--------RLNETVFHE 356
+T L L ++ + SG + L L+ + L+ L
Sbjct: 100 LTQLHYLYITHTNV----SGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL------- 148
Query: 357 NYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTY 416
P+L + GN + IP +F L
Sbjct: 149 ----PNLVGITFDGNRIS-----------GAIPDSYG-SFSKL----------------- 175
Query: 417 PDLEELRLSGNPLHVLPTGNLLPPQLSR--LRSLDLSRCKIDYLPPNVFNNTRNITSLNL 474
+ +S N L TG + PP + L +DLSR ++ +F + +N ++L
Sbjct: 176 --FTSMTISRNRL----TGKI-PPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228
Query: 475 ANNNLSMT-SELSFQFLDVLLELESLDLSNNNLT 507
A N+L+ ++ L LDL NN +
Sbjct: 229 AKNSLAFDLGKVGL-----SKNLNGLDLRNNRIY 257
Score = 58.7 bits (143), Expect = 2e-09
Identities = 59/303 (19%), Positives = 107/303 (35%), Gaps = 63/303 (20%)
Query: 191 DSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLS-AADLSVALKPLTKLHRLSLRN-C 248
+ D N G L D ++ L LSG L + +L L L+ L +
Sbjct: 29 PTTDCCNRTWLGVLC-DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN 87
Query: 249 GLS-RLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQ-RISRSTF 306
L +P + T L L I+H + A LS +++L LD Y+ L + S
Sbjct: 88 NLVGPIPP-AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS-I 145
Query: 307 LKMTSLKTLILSGNKLETLESGL----FQNLTHLS-VLELNNCGLT-RLNETVFHENYTY 360
+ +L + GN++ SG + + + L + ++ LT ++ T + N +
Sbjct: 146 SSLPNLVGITFDGNRI----SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAF 201
Query: 361 PDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLE 420
DL L G+ + + +
Sbjct: 202 VDLSRNMLEGD----------------ASVLFGSD---------------------KNTQ 224
Query: 421 ELRLSGNPLHVLPTGNLLPPQLSRLRSL---DLSRCKIDYLPPNVFNNTRNITSLNLANN 477
++ L+ N L +L ++ ++L DL +I P + + SLN++ N
Sbjct: 225 KIHLAKNSL----AFDL--GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278
Query: 478 NLS 480
NL
Sbjct: 279 NLC 281
Score = 49.8 bits (120), Expect = 1e-06
Identities = 28/117 (23%), Positives = 44/117 (37%), Gaps = 19/117 (16%)
Query: 419 LEELRLSGNPLHVLPTGNLLPP---QLSRLRSLDLSRCKID-YLPPNVFNNTRNITSLNL 474
L L S N L +G L PP L L + +I +P + + ++ TS+ +
Sbjct: 127 LVTLDFSYNAL----SGTL-PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181
Query: 475 ANNNLSMT--SELSFQFLDVLLELESLDLSNNNLT-HISPTVLRHNRAITSIKLVGN 528
+ N L+ + L L +DLS N L S ++ I L N
Sbjct: 182 SRNRLTGKIPPTFA------NLNLAFVDLSRNMLEGDASVL-FGSDKNTQKIHLAKN 231
Score = 37.5 bits (88), Expect = 0.011
Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 2/68 (2%)
Query: 439 PPQL-SRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELE 497
P L S L + D + + T + +L+L+ NL + + L L
Sbjct: 21 PTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLAN-LPYLN 79
Query: 498 SLDLSNNN 505
L + N
Sbjct: 80 FLYIGGIN 87
Score = 29.0 bits (66), Expect = 5.4
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 57 PQFFTNLTTLNKLDLSGNPL--RIIEPGVFDPLTSLEYLMLNRC 98
PQ T L L+ L++S N L I + G N+C
Sbjct: 261 PQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVS-AYANNKC 303
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 83.2 bits (206), Expect = 4e-18
Identities = 44/131 (33%), Positives = 61/131 (46%), Gaps = 7/131 (5%)
Query: 44 YLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYI 103
LY+ + ++K+ P F +L L +L L N L + GVFD LT L L L LT +
Sbjct: 44 ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL 103
Query: 104 SPSAFDNLNHLKTLELSQNKLKSHIDWTLVLG--NLGKLDTLDLRQSGISNLPDNVFANN 161
+ FD L HLK L + NKL L G L L L L Q+ + ++P F
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLTE-----LPRGIERLTHLTHLALDQNQLKSIPHGAFDRL 158
Query: 162 TWLRNLNLAEN 172
+ L + L N
Sbjct: 159 SSLTHAYLFGN 169
Score = 77.8 bits (192), Expect = 2e-16
Identities = 47/161 (29%), Positives = 62/161 (38%), Gaps = 30/161 (18%)
Query: 64 TTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNK 123
T L L N + +EPGVFD L +L+ L L L + FD+L L L+L N+
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99
Query: 124 LKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTL 183
L LP VF L+ L + N+L +L
Sbjct: 100 LTV--------------------------LPSAVFDRLVHLKELFMCCNKLTELPRGI-- 131
Query: 184 GQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNP 224
+ L HL L L LK + AF + L YL GNP
Sbjct: 132 -ERLTHLTHLALDQNQLKS-IPHGAFDRLSSLTHAYLFGNP 170
Score = 76.3 bits (188), Expect = 7e-16
Identities = 41/124 (33%), Positives = 54/124 (43%), Gaps = 4/124 (3%)
Query: 23 NLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEP 81
L+ N I +E G F +L LY+ L + F +LT L LDL N L ++
Sbjct: 46 YLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPS 105
Query: 82 GVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLD 141
VFD L L+ L + LT + P + L HL L L QN+LKS L L
Sbjct: 106 AVFDRLVHLKELFMCCNKLTEL-PRGIERLTHLTHLALDQNQLKSIPHG--AFDRLSSLT 162
Query: 142 TLDL 145
L
Sbjct: 163 HAYL 166
Score = 66.6 bits (163), Expect = 2e-12
Identities = 40/135 (29%), Positives = 55/135 (40%), Gaps = 17/135 (12%)
Query: 405 LNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFN 464
L VF +L+EL L N L LP G + L++L LDL ++ LP VF+
Sbjct: 55 LEPGVFDS---LINLKELYLGSNQLGALPVG--VFDSLTQLTVLDLGTNQLTVLPSAVFD 109
Query: 465 NTRNITSLNLANNNLSMTSELSFQFL----DVLLELESLDLSNNNLTHISPTVLRHNRAI 520
++ L + N L L + L L L L N L I ++
Sbjct: 110 RLVHLKELFMCCNKL--------TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161
Query: 521 TSIKLVGNPWKCDCN 535
T L GNPW C+C
Sbjct: 162 THAYLFGNPWDCECR 176
Score = 63.9 bits (156), Expect = 1e-11
Identities = 42/153 (27%), Positives = 61/153 (39%), Gaps = 15/153 (9%)
Query: 197 NCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPAN 256
+C K S A + + LYL N ++ + L L L L + L LP
Sbjct: 25 DCRSKRHASVPAGIPTNA-QILYLHDNQITKLE-PGVFDSLINLKELYLGSNQLGALPVG 82
Query: 257 TFHRFTCLQELDISHNPLIDAFTALLSP------LESLEHLDMGYSNLQRISRSTFLKMT 310
F T L LD+ N L T L P L L+ L M + L + R ++T
Sbjct: 83 VFDSLTQLTVLDLGTNQL----TVL--PSAVFDRLVHLKELFMCCNKLTELPRG-IERLT 135
Query: 311 SLKTLILSGNKLETLESGLFQNLTHLSVLELNN 343
L L L N+L+++ G F L+ L+ L
Sbjct: 136 HLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG 168
Score = 62.0 bits (151), Expect = 5e-11
Identities = 45/168 (26%), Positives = 65/168 (38%), Gaps = 38/168 (22%)
Query: 310 TSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLS 369
T+ + L L N++ LE G+F +L +L L L + L L VF L L L
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS---LTQLTVLDLG 96
Query: 370 GNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPL 429
N L VLP + FD LV L+EL + N L
Sbjct: 97 TNQLTVLPSAV---------------FDRLV-----------------HLKELFMCCNKL 124
Query: 430 HVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANN 477
LP G +L+ L L L + ++ +P F+ ++T L N
Sbjct: 125 TELPRG---IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
Score = 58.6 bits (142), Expect = 7e-10
Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 9/133 (6%)
Query: 191 DSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGL 250
L L + + L F + L+ LYL N L A + V LT+L L L L
Sbjct: 43 QILYLHDNQITK-LEPGVFDSLINLKELYLGSNQLGALPVGV-FDSLTQLTVLDLGTNQL 100
Query: 251 SRLPANTFHRFTCLQELDISHNPLIDAFTAL---LSPLESLEHLDMGYSNLQRISRSTFL 307
+ LP+ F R L+EL + N L T L + L L HL + + L+ I F
Sbjct: 101 TVLPSAVFDRLVHLKELFMCCNKL----TELPRGIERLTHLTHLALDQNQLKSIPHGAFD 156
Query: 308 KMTSLKTLILSGN 320
+++SL L GN
Sbjct: 157 RLSSLTHAYLFGN 169
Score = 58.2 bits (141), Expect = 1e-09
Identities = 38/133 (28%), Positives = 55/133 (41%), Gaps = 5/133 (3%)
Query: 141 DTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHL 200
L L + I+ L VF + L+ L L N+L L V + +L L LDL L
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVG--VFDSLTQLTVLDLGTNQL 100
Query: 201 KGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHR 260
L F L+ L++ N L+ L ++ LT L L+L L +P F R
Sbjct: 101 TV-LPSAVFDRLVHLKELFMCCNKLTE--LPRGIERLTHLTHLALDQNQLKSIPHGAFDR 157
Query: 261 FTCLQELDISHNP 273
+ L + NP
Sbjct: 158 LSSLTHAYLFGNP 170
Score = 56.6 bits (137), Expect = 4e-09
Identities = 34/137 (24%), Positives = 47/137 (34%), Gaps = 28/137 (20%)
Query: 242 RLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRI 301
L L + +++L F L+EL + N L +
Sbjct: 44 ILYLHDNQITKLEPGVFDSLINLKELYLGSN------------------------QLGAL 79
Query: 302 SRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYP 361
F +T L L L N+L L S +F L HL L + LT L + E T
Sbjct: 80 PVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGI--ERLT-- 135
Query: 362 DLEELRLSGNPLHVLPD 378
L L L N L +P
Sbjct: 136 HLTHLALDQNQLKSIPH 152
Score = 55.5 bits (134), Expect = 9e-09
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 289 EHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTR 348
+ L + + + ++ F + +LK L L N+L L G+F +LT L+VL+L LT
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102
Query: 349 LNETVFHENYTYPDLEELRLSGNPLHVLPD 378
L VF L+EL + N L LP
Sbjct: 103 LPSAVFDR---LVHLKELFMCCNKLTELPR 129
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 86.9 bits (215), Expect = 5e-18
Identities = 80/509 (15%), Positives = 151/509 (29%), Gaps = 104/509 (20%)
Query: 56 NPQFFTNLTTLNKLDLSGNP-------LRIIEPGVFDPL--------TSLEYLMLNRCNL 100
+ ++L G P + G P T LE + L R +
Sbjct: 58 PATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVV 117
Query: 101 TYISPSAF-DNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFA 159
T + + K L LS + S + L LDLR+S + ++ + +
Sbjct: 118 TDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLS 177
Query: 160 ----NNTWLRNLNLAE-NELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATK 214
T L +LN++ + L +L SL L+ L+ A +
Sbjct: 178 HFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLAT-LLQRAPQ 236
Query: 215 LRTLYLSG-----NPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDI 269
L L G P + LSVAL +L LS + + + L L++
Sbjct: 237 LEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNL 296
Query: 270 SHNPLID-------------------------AFTALLSPLESLEHLDMGYSNLQRISRS 304
S+ + L S + L L + S + +
Sbjct: 297 SYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPN 356
Query: 305 TFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLEL-NNCGLTRLNETVFHENYTYPDL 363
L L ++ + KLE++ + +T+ +++ + N P++
Sbjct: 357 VALTEQGLVSVSMGCPKLESVLYF-CRQMTNAALITIARNR----------------PNM 399
Query: 364 EELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELR 423
RL T + L+ DL L
Sbjct: 400 TRFRLCIIEPKAPDYLTLE---------------------PLDIGFGAIVEHCKDLRRLS 438
Query: 424 LSG----NPLHVLPTGNLLPPQLSRLRSLDLSRCKI-DYLPPNVFNNTRNITSLNLANNN 478
LSG + T ++ L ++ D +V + ++ L + +
Sbjct: 439 LSGLLTDKVFEYIGTY------AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP 492
Query: 479 LSMTSELSFQFLDVLLELESLDLSNNNLT 507
+ L + SL +S+ +++
Sbjct: 493 F--GDKALLANASKLETMRSLWMSSCSVS 519
Score = 63.0 bits (153), Expect = 2e-10
Identities = 52/365 (14%), Positives = 101/365 (27%), Gaps = 56/365 (15%)
Query: 40 RSLLYLYMQECTLSKINPQ----FFTNLTTLNKLDLSGNPLRIIEPGV---FDPLTSLEY 92
R+L L ++E + ++ F T+L L++S + + +L+
Sbjct: 156 RNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKS 215
Query: 93 LMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISN 152
L LNR + L+ L + D L SG +
Sbjct: 216 LKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWD 275
Query: 153 LPDN----VFANNTWLRNLNLAENELIDLDVA-----------------------TTLGQ 185
V++ + L LNL+ + D+ L
Sbjct: 276 AVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLAS 335
Query: 186 NLVHLDSLDLSNCHLK-----GPLSEDAFV----NATKLRTLYLSGNPLSAADLSVALKP 236
L L + L+E V KL ++ ++ A L +
Sbjct: 336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARN 395
Query: 237 LTKLHRLSLRNCGLSRLPANTF-----------HRFTCLQELDISHNPLIDAFTALLSPL 285
+ R L T L+ L +S F + +
Sbjct: 396 RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYA 455
Query: 286 ESLEHLDMGYSNLQRISRSTFLK-MTSLKTLILSGNKLETLES-GLFQNLTHLSVLELNN 343
+ +E L + ++ + L SL+ L + L + L +++
Sbjct: 456 KKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSS 515
Query: 344 CGLTR 348
C ++
Sbjct: 516 CSVSF 520
Score = 58.0 bits (140), Expect = 6e-09
Identities = 68/399 (17%), Positives = 120/399 (30%), Gaps = 63/399 (15%)
Query: 163 WLRNLNLAENELIDLDVATTLGQNLV----HLDSLDLSNC--------------HLKGPL 204
W ++ + ++ + S++L P
Sbjct: 37 WYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPW 96
Query: 205 SEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNC------GLSRLPANTF 258
E + T L + L ++ L + K L L +C GL+ + A
Sbjct: 97 IEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAAT-- 154
Query: 259 HRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILS 318
L+ELD+ + + D L H Y++L ++ S S L
Sbjct: 155 --CRNLKELDLRESDVDDVS------GHWLSHFPDTYTSLVSLNISCLASEVSFSALER- 205
Query: 319 GNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPD 378
L +L L+LN T+ P LEEL G V PD
Sbjct: 206 ----------LVTRCPNLKSLKLNRAVPLEKLATLLQRA---PQLEELGTGGYTAEVRPD 252
Query: 379 STKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTY-PDLEELRLSGNPLHVLPTGNL 437
YS ++ K L + Y+ L L LS +
Sbjct: 253 V---YSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQS-YDLVK 308
Query: 438 LPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLE-- 495
L Q +L+ L + D + + +++ L + + E + + L
Sbjct: 309 LLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSE-PFVMEPNVALTEQGLVSV 367
Query: 496 ------LESLDLSNNNLTHIS-PTVLRHNRAITSIKLVG 527
LES+ +T+ + T+ R+ +T +L
Sbjct: 368 SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCI 406
Score = 49.9 bits (119), Expect = 2e-06
Identities = 39/249 (15%), Positives = 78/249 (31%), Gaps = 30/249 (12%)
Query: 17 PGLITINLNANPIQPVEGAFLVAR--SLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGN 74
L T+NL+ +Q + L+ + L L++ + + L +L + +
Sbjct: 289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPS 348
Query: 75 PLRIIEPG----------VFDPLTSLEYLMLNRCNLTYISPSAF-DNLNHLKTLELSQNK 123
++EP V LE ++ +T + N ++ L +
Sbjct: 349 EPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIE 408
Query: 124 LKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTL 183
K+ TL + G + + LR L+L + L+ V +
Sbjct: 409 PKAPDYLTLEPLD-----------IGFGAI----VEHCKDLRRLSL--SGLLTDKVFEYI 451
Query: 184 GQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRL 243
G ++ L ++ LR L + P L L + L
Sbjct: 452 GTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSL 511
Query: 244 SLRNCGLSR 252
+ +C +S
Sbjct: 512 WMSSCSVSF 520
Score = 35.6 bits (82), Expect = 0.061
Identities = 28/188 (14%), Positives = 68/188 (36%), Gaps = 16/188 (8%)
Query: 360 YPDLEELRLSGNP----LHVLPDSTKQYSMRTIPTQIWKNFDFLVIL-----FILNETVF 410
+P + + L G P +++PD Y I + ++ +L + + ++ +
Sbjct: 65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWI-EAMSSSYTWLEEIRLKRMVVTDDCLE 123
Query: 411 HENYTYPDLEELRLSGNPLHVLPTG-NLLPPQLSRLRSLDLSRCKIDYLPPNVF----NN 465
++ + + L LS G + L+ LDL +D + + +
Sbjct: 124 LIAKSFKNFKVLVLSSCE-GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182
Query: 466 TRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKL 525
++ SLN++ ++ + + L+SL L+ T+L+ + +
Sbjct: 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGT 242
Query: 526 VGNPWKCD 533
G +
Sbjct: 243 GGYTAEVR 250
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 79.7 bits (197), Expect = 3e-17
Identities = 48/132 (36%), Positives = 70/132 (53%), Gaps = 8/132 (6%)
Query: 44 YLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYI 103
YL ++ +L + F LT+L +L L GN L+ + GVF+ LTSL YL L+ L +
Sbjct: 32 YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91
Query: 104 SPSAFDNLNHLKTLELSQNKLKSHIDWTL---VLGNLGKLDTLDLRQSGISNLPDNVFAN 160
FD L LK L L+ N+L+S L V L +L L L Q+ + ++PD VF
Sbjct: 92 PNGVFDKLTQLKELALNTNQLQS-----LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 146
Query: 161 NTWLRNLNLAEN 172
T L+ + L +N
Sbjct: 147 LTSLQYIWLHDN 158
Score = 78.9 bits (195), Expect = 7e-17
Identities = 46/124 (37%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Query: 23 NLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEP 81
+L N ++ + G F SL LY+ L + F LT+L L+LS N L+ +
Sbjct: 34 DLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPN 93
Query: 82 GVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLD 141
GVFD LT L+ L LN L + FD L LK L L QN+LKS D V L L
Sbjct: 94 GVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDG--VFDRLTSLQ 151
Query: 142 TLDL 145
+ L
Sbjct: 152 YIWL 155
Score = 73.2 bits (180), Expect = 7e-15
Identities = 49/166 (29%), Positives = 63/166 (37%), Gaps = 39/166 (23%)
Query: 64 TTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNK 123
LDL N L+ + GVFD LTSL L L L + F+ L L L LS N+
Sbjct: 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87
Query: 124 LKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDL-----D 178
L+S LP+ VF T L+ L L N+L L D
Sbjct: 88 LQS--------------------------LPNGVFDKLTQLKELALNTNQLQSLPDGVFD 121
Query: 179 VATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNP 224
L L L L LK + + F T L+ ++L NP
Sbjct: 122 -------KLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNP 159
Score = 66.6 bits (163), Expect = 1e-12
Identities = 35/105 (33%), Positives = 49/105 (46%), Gaps = 1/105 (0%)
Query: 19 LITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLR 77
L + L N +Q + G F SL YL + L + F LT L +L L+ N L+
Sbjct: 54 LTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ 113
Query: 78 IIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQN 122
+ GVFD LT L+ L L + L + FD L L+ + L N
Sbjct: 114 SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158
Score = 65.5 bits (160), Expect = 2e-12
Identities = 46/148 (31%), Positives = 61/148 (41%), Gaps = 8/148 (5%)
Query: 388 IPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRS 447
IP Q L L VF E L +L L GN L LP G + +L+ L
Sbjct: 26 IPAQTTYLDLETNSLKSLPNGVFDE---LTSLTQLYLGGNKLQSLPNG--VFNKLTSLTY 80
Query: 448 LDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLT 507
L+LS ++ LP VF+ + L L N L + F D L +L+ L L N L
Sbjct: 81 LNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVF---DKLTQLKDLRLYQNQLK 137
Query: 508 HISPTVLRHNRAITSIKLVGNPWKCDCN 535
+ V ++ I L NPW C C
Sbjct: 138 SVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
Score = 63.2 bits (154), Expect = 2e-11
Identities = 42/131 (32%), Positives = 62/131 (47%), Gaps = 3/131 (2%)
Query: 242 RLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRI 301
L L L LP F T L +L + N L + + L SL +L++ + LQ +
Sbjct: 32 YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91
Query: 302 SRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYP 361
F K+T LK L L+ N+L++L G+F LT L L L L + + VF + T
Sbjct: 92 PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVF-DRLT-- 148
Query: 362 DLEELRLSGNP 372
L+ + L NP
Sbjct: 149 SLQYIWLHDNP 159
Score = 56.2 bits (136), Expect = 3e-09
Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 289 EHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTR 348
+LD+ ++L+ + F ++TSL L L GNKL++L +G+F LT L+ L L+ L
Sbjct: 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90
Query: 349 LNETVFHENYTYPDLEELRLSGNPLHVLPD 378
L VF + L+EL L+ N L LPD
Sbjct: 91 LPNGVFDK---LTQLKELALNTNQLQSLPD 117
Score = 56.2 bits (136), Expect = 4e-09
Identities = 44/133 (33%), Positives = 60/133 (45%), Gaps = 4/133 (3%)
Query: 141 DTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHL 200
LDL + + +LP+ VF T L L L N+L L + L L L+LS L
Sbjct: 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNG--VFNKLTSLTYLNLSTNQL 88
Query: 201 KGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHR 260
+ L F T+L+ L L+ N L + V K LT+L L L L +P F R
Sbjct: 89 QS-LPNGVFDKLTQLKELALNTNQLQSLPDGVFDK-LTQLKDLRLYQNQLKSVPDGVFDR 146
Query: 261 FTCLQELDISHNP 273
T LQ + + NP
Sbjct: 147 LTSLQYIWLHDNP 159
Score = 55.5 bits (134), Expect = 6e-09
Identities = 45/168 (26%), Positives = 69/168 (41%), Gaps = 37/168 (22%)
Query: 310 TSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLS 369
L L N L++L +G+F LT L+ L L L L VF++ L L LS
Sbjct: 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNK---LTSLTYLNLS 84
Query: 370 GNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPL 429
N L LP+ FD L L+EL L+ N L
Sbjct: 85 TNQLQSLPNGV---------------FDKLT-----------------QLKELALNTNQL 112
Query: 430 HVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANN 477
LP G + +L++L+ L L + ++ +P VF+ ++ + L +N
Sbjct: 113 QSLPDG--VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 77.0 bits (190), Expect = 2e-16
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 43 LYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTY 102
LYL + TL P+ +N L +DLS N + + F +T L L+L+ L
Sbjct: 36 LYLDGNQFTLV---PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92
Query: 103 ISPSAFDNLNHLKTLELSQNKLKS 126
I P FD L L+ L L N +
Sbjct: 93 IPPRTFDGLKSLRLLSLHGNDISV 116
Score = 74.6 bits (184), Expect = 2e-15
Identities = 31/99 (31%), Positives = 49/99 (49%)
Query: 24 LNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGV 83
L+ N V + L + + +S ++ Q F+N+T L L LS N LR I P
Sbjct: 38 LDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRT 97
Query: 84 FDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQN 122
FD L SL L L+ +++ + AF++L+ L L + N
Sbjct: 98 FDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Score = 70.8 bits (174), Expect = 3e-14
Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 6/134 (4%)
Query: 418 DLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANN 477
D+ EL L GN ++P L +DLS +I L F+N + +L L+ N
Sbjct: 32 DVTELYLDGNQFTLVPKEL---SNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88
Query: 478 NLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIA 537
L +F D L L L L N+++ + A++ + + NP CDCN+
Sbjct: 89 RLRCIPPRTF---DGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQ 145
Query: 538 DMWEWATREKGDIG 551
+ +W E + G
Sbjct: 146 WLSDWVKSEYKEPG 159
Score = 61.2 bits (149), Expect = 6e-11
Identities = 33/126 (26%), Positives = 48/126 (38%), Gaps = 26/126 (20%)
Query: 218 LYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDA 277
LYL GN + + L L + L N +S L +F T L L +S+N
Sbjct: 36 LYLDGNQFTL--VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN----- 88
Query: 278 FTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLS 337
L+ I TF + SL+ L L GN + + G F +L+ LS
Sbjct: 89 -------------------RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALS 129
Query: 338 VLELNN 343
L +
Sbjct: 130 HLAIGA 135
Score = 58.1 bits (141), Expect = 8e-10
Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 11/124 (8%)
Query: 251 SRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMT 310
+P + EL + N L S + L +D+ + + +S +F MT
Sbjct: 27 KGIPRDV-------TELYLDGNQFTLVPKEL-SNYKHLTLIDLSNNRISTLSNQSFSNMT 78
Query: 311 SLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSG 370
L TLILS N+L + F L L +L L+ ++ + E F++ L L +
Sbjct: 79 QLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFND---LSALSHLAIGA 135
Query: 371 NPLH 374
NPL+
Sbjct: 136 NPLY 139
Score = 54.2 bits (131), Expect = 2e-08
Identities = 32/138 (23%), Positives = 49/138 (35%), Gaps = 30/138 (21%)
Query: 88 TSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQ 147
+ L L+ T + P N HL ++LS N++ +
Sbjct: 31 RDVTELYLDGNQFTLV-PKELSNYKHLTLIDLSNNRIST--------------------- 68
Query: 148 SGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSED 207
L + F+N T L L L+ N L + T L L L L + + E
Sbjct: 69 -----LSNQSFSNMTQLLTLILSYNRLRCIPPRTF--DGLKSLRLLSLHGNDISV-VPEG 120
Query: 208 AFVNATKLRTLYLSGNPL 225
AF + + L L + NPL
Sbjct: 121 AFNDLSALSHLAIGANPL 138
Score = 52.7 bits (127), Expect = 5e-08
Identities = 36/110 (32%), Positives = 46/110 (41%), Gaps = 5/110 (4%)
Query: 165 RNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNP 224
L L N+ + N HL +DLSN + LS +F N T+L TL LS N
Sbjct: 34 TELYLDGNQFTLVPKEL---SNYKHLTLIDLSNNRIST-LSNQSFSNMTQLLTLILSYNR 89
Query: 225 LSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPL 274
L L L LSL +S +P F+ + L L I NPL
Sbjct: 90 LRCIPPRTFDG-LKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 40.0 bits (94), Expect = 0.001
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 310 TSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLS 369
+ L L GN+ TL N HL++++L+N ++ L+ F N T L L LS
Sbjct: 31 RDVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFS-NMT--QLLTLILS 86
Query: 370 GNPLHVLPD 378
N L +P
Sbjct: 87 YNRLRCIPP 95
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 77.0 bits (190), Expect = 2e-16
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 44 YLYMQECTLSKINPQ-FFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTY 102
L + + L +I+ F L L KL+L N L IEP F+ + ++ L L +
Sbjct: 33 ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE 92
Query: 103 ISPSAFDNLNHLKTLELSQNKLKS 126
IS F L+ LKTL L N++
Sbjct: 93 ISNKMFLGLHQLKTLNLYDNQISC 116
Score = 76.6 bits (189), Expect = 3e-16
Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 4/134 (2%)
Query: 418 DLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANN 477
EL L+ N L + + L +L L L+L R ++ + PN F +I L L N
Sbjct: 30 HTTELLLNDNELGRISSDGLFG-RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88
Query: 478 NLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIA 537
+ S F L +L++L+L +N ++ + P H ++TS+ L NP+ C+C++A
Sbjct: 89 KIKEISNKMF---LGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA 145
Query: 538 DMWEWATREKGDIG 551
EW ++ + G
Sbjct: 146 WFAEWLRKKSLNGG 159
Score = 74.7 bits (184), Expect = 1e-15
Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 2/103 (1%)
Query: 22 INLNANPIQ--PVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRII 79
+ LN N + +G F L+ L ++ L+ I P F + + +L L N ++ I
Sbjct: 34 LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI 93
Query: 80 EPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQN 122
+F L L+ L L ++ + P +F++LN L +L L+ N
Sbjct: 94 SNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 63.5 bits (155), Expect = 1e-11
Identities = 31/128 (24%), Positives = 49/128 (38%), Gaps = 24/128 (18%)
Query: 216 RTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLI 275
L L+ N L L L +L L+ L+ + N F + +QEL + N
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN--- 88
Query: 276 DAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTH 335
++ IS FL + LKTL L N++ + G F++L
Sbjct: 89 ---------------------KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS 127
Query: 336 LSVLELNN 343
L+ L L +
Sbjct: 128 LTSLNLAS 135
Score = 56.2 bits (136), Expect = 3e-09
Identities = 33/139 (23%), Positives = 53/139 (38%), Gaps = 30/139 (21%)
Query: 88 TSLEYLMLNRCNLTYISPSA-FDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLR 146
L+LN L IS F L HL LEL +N+L
Sbjct: 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG-------------------- 68
Query: 147 QSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSE 206
+ N F + ++ L L EN++ ++ LG L L +L+L + + +
Sbjct: 69 ------IEPNAFEGASHIQELQLGENKIKEISNKMFLG--LHQLKTLNLYDNQISC-VMP 119
Query: 207 DAFVNATKLRTLYLSGNPL 225
+F + L +L L+ NP
Sbjct: 120 GSFEHLNSLTSLNLASNPF 138
Score = 55.0 bits (133), Expect = 7e-09
Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 11/124 (8%)
Query: 251 SRLPANTFHRFTCLQELDISHNPLID-AFTALLSPLESLEHLDMGYSNLQRISRSTFLKM 309
+P +T EL ++ N L + L L L L++ + L I + F
Sbjct: 25 RDIPLHT-------TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA 77
Query: 310 TSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLS 369
+ ++ L L NK++ + + +F L L L L + ++ + F L L L+
Sbjct: 78 SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFE---HLNSLTSLNLA 134
Query: 370 GNPL 373
NP
Sbjct: 135 SNPF 138
Score = 53.1 bits (128), Expect = 3e-08
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 3/110 (2%)
Query: 165 RNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNP 224
L L +NEL + + L L HL L+L L G + +AF A+ ++ L L N
Sbjct: 32 TELLLNDNELGRIS-SDGLFGRLPHLVKLELKRNQLTG-IEPNAFEGASHIQELQLGENK 89
Query: 225 LSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPL 274
+ + L L +L L+L + +S + +F L L+++ NP
Sbjct: 90 IKEISNKMFLG-LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
Score = 41.5 bits (98), Expect = 3e-04
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 310 TSLKTLILSGNKLETLES-GLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRL 368
L+L+ N+L + S GLF L HL LEL LT + F E + ++EL+L
Sbjct: 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF-EGAS--HIQELQL 85
Query: 369 SGNPLHVLPD 378
N + + +
Sbjct: 86 GENKIKEISN 95
Score = 28.4 bits (64), Expect = 6.3
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 19 LITINLNANPIQPV-EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPL 76
+ + L N I+ + FL L L + + +S + P F +L +L L+L+ NP
Sbjct: 80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 76.1 bits (188), Expect = 3e-16
Identities = 36/102 (35%), Positives = 47/102 (46%), Gaps = 2/102 (1%)
Query: 44 YLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYI 103
L ++ L + F LT L KL LS N ++ + GVFD LT L L L+ L +
Sbjct: 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL 91
Query: 104 SPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDL 145
FD L LK L L N+LKS D + L L + L
Sbjct: 92 PNGVFDKLTQLKELALDTNQLKSVPDG--IFDRLTSLQKIWL 131
Score = 72.7 bits (179), Expect = 5e-15
Identities = 36/112 (32%), Positives = 56/112 (50%), Gaps = 8/112 (7%)
Query: 64 TTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNK 123
++ +L+L N L+ + GVFD LT L L L++ + + FD L L L L +NK
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87
Query: 124 LKSHIDWTL---VLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAEN 172
L+S L V L +L L L + + ++PD +F T L+ + L N
Sbjct: 88 LQS-----LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 66.1 bits (162), Expect = 9e-13
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Query: 23 NLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEP 81
L +N +Q + G F L L + + + + F LT L L L N L+ +
Sbjct: 34 ELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPN 93
Query: 82 GVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQN 122
GVFD LT L+ L L+ L + FD L L+ + L N
Sbjct: 94 GVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 61.9 bits (151), Expect = 2e-11
Identities = 37/118 (31%), Positives = 51/118 (43%), Gaps = 5/118 (4%)
Query: 418 DLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANN 477
L L N L LP G + +L++L L LS+ +I LP VF+ +T L L N
Sbjct: 29 SATRLELESNKLQSLPHG--VFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86
Query: 478 NLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCN 535
L F D L +L+ L L N L + + ++ I L NPW C C
Sbjct: 87 KLQSLPNGVF---DKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141
Score = 53.8 bits (130), Expect = 2e-08
Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 289 EHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTR 348
L++ + LQ + F K+T L L LS N++++L G+F LT L++L L+ L
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 349 LNETVFHENYTYPDLEELRLSGNPLHVLPD 378
L VF + T L+EL L N L +PD
Sbjct: 91 LPNGVF-DKLT--QLKELALDTNQLKSVPD 117
Score = 52.7 bits (127), Expect = 4e-08
Identities = 36/131 (27%), Positives = 54/131 (41%), Gaps = 27/131 (20%)
Query: 242 RLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRI 301
RL L + L LP F + T L +L +S N +Q +
Sbjct: 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSQN------------------------QIQSL 67
Query: 302 SRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYP 361
F K+T L L L NKL++L +G+F LT L L L+ L + + +F
Sbjct: 68 PDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFD---RLT 124
Query: 362 DLEELRLSGNP 372
L+++ L NP
Sbjct: 125 SLQKIWLHTNP 135
Score = 46.5 bits (111), Expect = 5e-06
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 310 TSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLS 369
+S L L NKL++L G+F LT L+ L L+ + L + VF + L L L
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDK---LTKLTILYLH 84
Query: 370 GNPLHVLPD 378
N L LP+
Sbjct: 85 ENKLQSLPN 93
Score = 46.1 bits (110), Expect = 7e-06
Identities = 32/117 (27%), Positives = 44/117 (37%), Gaps = 25/117 (21%)
Query: 204 LSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTC 263
L F T+L L LS N + + V K LTKL L L L LP F + T
Sbjct: 43 LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDK-LTKLTILYLHENKLQSLPNGVFDKLTQ 101
Query: 264 LQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGN 320
L+EL + N L+ + F ++TSL+ + L N
Sbjct: 102 LKELALDTN------------------------QLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 43.4 bits (103), Expect = 5e-05
Identities = 38/133 (28%), Positives = 54/133 (40%), Gaps = 28/133 (21%)
Query: 141 DTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHL 200
L+L + + +LP VF T L L+L++N++ L D L
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGV--------FDKL------- 75
Query: 201 KGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHR 260
TKL LYL N L + V K LT+L L+L L +P F R
Sbjct: 76 ------------TKLTILYLHENKLQSLPNGVFDK-LTQLKELALDTNQLKSVPDGIFDR 122
Query: 261 FTCLQELDISHNP 273
T LQ++ + NP
Sbjct: 123 LTSLQKIWLHTNP 135
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 75.2 bits (184), Expect = 9e-15
Identities = 28/116 (24%), Positives = 43/116 (37%), Gaps = 8/116 (6%)
Query: 262 TCLQ--ELDISHNPLIDAFTALLSPLESLEHLDMGYSN-LQRISRSTFLKMTSLKTLILS 318
L + + +D+ L E+L L + LQ + + L+ L +
Sbjct: 6 CPHGSSGLRCTRDGALDSLHHL-PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIV 64
Query: 319 GNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLH 374
+ L + F LS L L+ L L+ L+EL LSGNPLH
Sbjct: 65 KSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ----GLSLQELVLSGNPLH 116
Score = 74.8 bits (183), Expect = 1e-14
Identities = 30/135 (22%), Positives = 50/135 (37%), Gaps = 31/135 (22%)
Query: 417 PDLEELRLSGNP-LHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLA 475
+L EL + L L +L L LR+L + + + ++ P+ F+ T ++ LNL+
Sbjct: 31 ENLTELYIENQQHLQHLELRDL--RGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88
Query: 476 NNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCN 535
N L S + Q L +L + L GNP C C
Sbjct: 89 FNALESLSWKTVQGL--------------SLQE--------------LVLSGNPLHCSCA 120
Query: 536 IADMWEWATREKGDI 550
+ + W G +
Sbjct: 121 LRWLQRWEEEGLGGV 135
Score = 73.2 bits (179), Expect = 4e-14
Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 2/91 (2%)
Query: 35 AFLVARSLLYLYMQEC-TLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYL 93
A +L LY++ L + + L L L + + LR + P F L L
Sbjct: 26 HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85
Query: 94 MLNRCNLTYISPSAFDNLNHLKTLELSQNKL 124
L+ L +S L+ L+ L LS N L
Sbjct: 86 NLSFNALESLSWKTVQGLS-LQELVLSGNPL 115
Score = 72.5 bits (177), Expect = 7e-14
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Query: 56 NPQFFTNLTTLNKLDLSGNP-LRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHL 114
+ L +L + L+ +E L L L + + L +++P AF L
Sbjct: 23 SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82
Query: 115 KTLELSQNKLKS 126
L LS N L+S
Sbjct: 83 SRLNLSFNALES 94
Score = 63.6 bits (154), Expect = 5e-11
Identities = 21/78 (26%), Positives = 28/78 (35%), Gaps = 4/78 (5%)
Query: 304 STFLKMTSLKTLILSGNK-LETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPD 362
+L L + + L+ LE + L L L + GL + FH P
Sbjct: 25 HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFT---PR 81
Query: 363 LEELRLSGNPLHVLPDST 380
L L LS N L L T
Sbjct: 82 LSRLNLSFNALESLSWKT 99
Score = 61.3 bits (148), Expect = 3e-10
Identities = 25/105 (23%), Positives = 39/105 (37%), Gaps = 10/105 (9%)
Query: 104 SPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTW 163
S +L L + + H++ L LG+L L + +SG+ + + F
Sbjct: 23 SLHHLPGAENLTELYIENQQHLQHLELR-DLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81
Query: 164 LRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKG-PLSED 207
L LNL+ N L +L + L L L G PL
Sbjct: 82 LSRLNLSFNAL------ESLSWKT--VQGLSLQELVLSGNPLHCS 118
Score = 60.9 bits (147), Expect = 4e-10
Identities = 28/127 (22%), Positives = 44/127 (34%), Gaps = 26/127 (20%)
Query: 197 NCHLKGPLSE-DAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPA 255
C G L A L LY+ L+ L +L L++ GL +
Sbjct: 14 RCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP 73
Query: 256 NTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTL 315
+ FH L L++ ++ L+ +S T + SL+ L
Sbjct: 74 DAFHF------------------------TPRLSRLNLSFNALESLSWKTV-QGLSLQEL 108
Query: 316 ILSGNKL 322
+LSGN L
Sbjct: 109 VLSGNPL 115
Score = 54.4 bits (130), Expect = 5e-08
Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 9/104 (8%)
Query: 19 LITINLNANP-IQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPL 76
L + + +Q +E L L + + L + P F L++L+LS N L
Sbjct: 33 LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92
Query: 77 RIIEPGVFDPLTSLEYLMLNR------CNLTYISPSAFDNLNHL 114
+ L SL+ L+L+ C L ++ + L +
Sbjct: 93 ESLSWKTVQGL-SLQELVLSGNPLHCSCALRWLQRWEEEGLGGV 135
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 75.5 bits (186), Expect = 1e-14
Identities = 48/262 (18%), Positives = 77/262 (29%), Gaps = 51/262 (19%)
Query: 159 ANNTWLRNLNLAENELIDLDVATTLGQNLVH---LDSLDLSNCHLKGPLSE--------- 206
+ ++ + L+ N I + A L +N+ L+ + S+ E
Sbjct: 29 LEDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLL 87
Query: 207 DAFVNATKLRTLYLSGNPLS---AADLSVALKPLTKLHRLSLRNCGLS------------ 251
A + KL T+ LS N L L T L L L N GL
Sbjct: 88 QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQ 147
Query: 252 -RLPANTFHRFTCLQELDISHNPLID----AFTALLSPLESLEHLDMGYSNL-----QRI 301
L+ + N L + + L + M + + + +
Sbjct: 148 ELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL 207
Query: 302 SRSTFLKMTSLKTLILSGNKL-----ETLESGLFQNLTHLSVLELNNCGLTRLNETVFH- 355
LK L L N L L ++ +L L LN+C L+
Sbjct: 208 LLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL-KSWPNLRELGLNDCLLS--ARGAAAV 264
Query: 356 ----ENYTYPDLEELRLSGNPL 373
L+ LRL N +
Sbjct: 265 VDAFSKLENIGLQTLRLQYNEI 286
Score = 75.1 bits (185), Expect = 1e-14
Identities = 62/371 (16%), Positives = 114/371 (30%), Gaps = 94/371 (25%)
Query: 15 DNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGN 74
++ + I L+ N I E A ++ ++ + L + S
Sbjct: 30 EDDSVKEIVLSGNTIGT-EAARWLSENIA------------------SKKDLEIAEFSDI 70
Query: 75 PLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLV- 133
++ + + L L A L T+ LS N L+
Sbjct: 71 FTGRVKDEIPEALRLL--------------LQALLKCPKLHTVRLSDNAFGPTAQEPLID 116
Query: 134 -LGNLGKLDTLDLRQSGIS-------------NLPDNVFANNTWLRNLNLAENELID--- 176
L L+ L L +G+ + N LR++ N L +
Sbjct: 117 FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM 176
Query: 177 LDVATTLGQNLVHLDSLDLSNCHLK----GPLSEDAFVNATKLRTLYLSGNPLS---AAD 229
+ A T + L ++ + ++ L + +L+ L L N + ++
Sbjct: 177 KEWAKTFQSH-RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSA 235
Query: 230 LSVALKPLTKLHRLSLRNCGLSR------LPANTFHRFTCLQELDISHNPLIDAFTALLS 283
L++ALK L L L +C LS + A + LQ L + +N + L
Sbjct: 236 LAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK 295
Query: 284 PLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESG--------LFQNLTH 335
++ KM L L L+GN+ E +F
Sbjct: 296 --TVIDE-----------------KMPDLLFLELNGNRFS--EEDDVVDEIREVFSTRGR 334
Query: 336 LSVLELNNCGL 346
+ EL++
Sbjct: 335 GELDELDDMEE 345
Score = 65.9 bits (161), Expect = 1e-11
Identities = 50/371 (13%), Positives = 98/371 (26%), Gaps = 90/371 (24%)
Query: 190 LDSLDLSNCHLKG----PLSEDAFVNATKLRTLYLSGNPLS---AADLSVALKPLTKLHR 242
++ L + + + ++ + LSGN + A LS + L
Sbjct: 6 IEGKSLKLDAITTEDEKSVFA-VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64
Query: 243 LSLRNCGLSRLP----------ANTFHRFTCLQELDISHNPL----IDAFTALLSPLESL 288
+ R+ + L + +S N + LS L
Sbjct: 65 AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 124
Query: 289 EHLDMGYSNL-------------QRISRSTFLKMTSLKTLILSGNKLE-----TLESGLF 330
EHL + + L + L+++I N+LE
Sbjct: 125 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184
Query: 331 QNLTHLSVLELNNCGLT-----RLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSM 385
+ L +++ G+ L +L+ L L N
Sbjct: 185 SH-RLLHTVKMVQNGIRPEGIEHLLLEGLAYC---QELKVLDLQDNTFTH-------LGS 233
Query: 386 RTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTG------NLLP 439
+ + P+L EL L+ L G
Sbjct: 234 SALAIALKSW---------------------PNLRELGLNDCLLS--ARGAAAVVDAFSK 270
Query: 440 PQLSRLRSLDLSRCKID-----YLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLL 494
+ L++L L +I+ L + ++ L L N S ++ + +V
Sbjct: 271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFS 330
Query: 495 ELESLDLSNNN 505
+L +
Sbjct: 331 TRGRGELDELD 341
Score = 65.5 bits (160), Expect = 2e-11
Identities = 56/358 (15%), Positives = 100/358 (27%), Gaps = 94/358 (26%)
Query: 215 LRTLYLSGNPLSAAD---LSVALKPLTKLHRLSLRNCGLS----RLPANTFHRFTCLQEL 267
+ L + ++ D + L + + L + R + L+
Sbjct: 6 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65
Query: 268 DISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKL----- 322
+ S D L+ + ++ LK L T+ LS N
Sbjct: 66 EFSDIFTGRV-------------KDEIPEALRLLLQA-LLKCPKLHTVRLSDNAFGPTAQ 111
Query: 323 ETLESGLFQNLTHLSVLELNNCGLTR----------LNETVFHENYTYPDLEELRLSGNP 372
E L L ++ T L L L+N GL V + P L + N
Sbjct: 112 EPLIDFLSKH-TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170
Query: 373 LHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVL 432
L S K F + L +++ N +
Sbjct: 171 LE--NGSMK----------------EWAKTFQSHRL----------LHTVKMVQNGIRPE 202
Query: 433 PTGNLLPPQLSR---LRSLDLSRCKI---------DYLPPNVFNNTRNITSLNLANNNLS 480
+LL L+ L+ LDL L N+ L L + L
Sbjct: 203 GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW-----PNLRELGLNDCLL- 256
Query: 481 MTSELSFQFLDVLLE-----LESLDLSNNNLT-----HISPTVLRHNRAITSIKLVGN 528
++ + +D + L++L L N + + + + ++L GN
Sbjct: 257 -SARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 313
Score = 64.0 bits (156), Expect = 6e-11
Identities = 48/277 (17%), Positives = 79/277 (28%), Gaps = 60/277 (21%)
Query: 14 LDNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSG 73
L P L T+ L+ N P + L + T L L L
Sbjct: 91 LKCPKLHTVRLSDNAFGP-TAQEPLIDFL------------------SKHTPLEHLYLHN 131
Query: 74 NPL-------------RIIEPGVFDPLTSLEYLMLNRCNLT-----YISPSAFDNLNHLK 115
N L + L ++ R L + F + L
Sbjct: 132 NGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA-KTFQSHRLLH 190
Query: 116 TLELSQNKLKSH-IDWTL--VLGNLGKLDTLDLRQSGISN-----LPDNVFANNTWLRNL 167
T+++ QN ++ I+ L L +L LDL+ + ++ L + LR L
Sbjct: 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI-ALKSWPNLREL 249
Query: 168 NLAENELID---LDVATTLGQNL-VHLDSLDLSNCHLKGP----LSEDAFVNATKLRTLY 219
L + L V + + L +L L ++ L L L
Sbjct: 250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 309
Query: 220 LSGNPLSAAD-----LSVALKPLTKLHRLSLRNCGLS 251
L+GN S D + + L +
Sbjct: 310 LNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEEL 346
Score = 31.2 bits (71), Expect = 1.0
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 18/65 (27%)
Query: 12 RNLDNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDL 71
L+N GL T+ L N I+ + + + + L L+L
Sbjct: 269 SKLENIGLQTLRLQYNEIEL-DAVRTLKTVID-----------------EKMPDLLFLEL 310
Query: 72 SGNPL 76
+GN
Sbjct: 311 NGNRF 315
Score = 29.3 bits (66), Expect = 4.4
Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 11/71 (15%)
Query: 466 TRNITSLNLANNNLSMTSELSFQFLDVLLE---LESLDLSNNNLT-----HISPTVLRHN 517
+I +L + + T+E VLLE ++ + LS N + +S +
Sbjct: 3 RFSIEGKSLKLDAI--TTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLS-ENIASK 59
Query: 518 RAITSIKLVGN 528
+ + +
Sbjct: 60 KDLEIAEFSDI 70
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 73.6 bits (181), Expect = 3e-14
Identities = 50/316 (15%), Positives = 92/316 (29%), Gaps = 37/316 (11%)
Query: 85 DPLTSLEYLMLNRCNLTYISPSAFDNLN-HLKTLELSQNKLKSHIDWTLV----LGNLGK 139
L E L + + + + L+ L L+ ++ + + T+V
Sbjct: 44 QVLPPSELLDHLFFHYEFQNQRFSAEVLSSLRQLNLAGVRM-TPVKCTVVAAVLGSGRHA 102
Query: 140 LDTLDLRQSGISNLPDNVFA---NNTWLRNLNLAENELIDLDV---ATTLGQNLVHLDSL 193
LD ++L + P + R L L N L L + + +L
Sbjct: 103 LDEVNLASCQLD--PAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTL 160
Query: 194 DLSNCHLKGP----LSEDAFVNATKLRTLYLSGNPLS---AADLSVALKPLTKLHRLSLR 246
LSN L L E T + L L L L+ L +L L++
Sbjct: 161 RLSNNPLTAAGVAVLME-GLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVA 219
Query: 247 NCGLSRLPANTFHRF----TCLQELDISHNPLID----AFTALLSPLESLEHLDMGYSNL 298
G A R L+ L + N L L E + + +
Sbjct: 220 YNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEG 279
Query: 299 QRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENY 358
+S + ++ ++ L + + Q L + +L + LN +
Sbjct: 280 TAVSEYWSVILSEVQR------NLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLL 333
Query: 359 TY-PDLEELRLSGNPL 373
++ L
Sbjct: 334 RVEGEVRALLEQLGSS 349
Score = 65.1 bits (159), Expect = 2e-11
Identities = 51/259 (19%), Positives = 80/259 (30%), Gaps = 48/259 (18%)
Query: 134 LGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSL 193
+ NL L+ + + L V + L + E + + + L L L
Sbjct: 22 IKNLDALENAQAIKKKLGKLGRQVLPPSELL-DHLFFHYEFQNQRFSA---EVLSSLRQL 77
Query: 194 DLSNCHLKGP-----LSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNC 248
+L+ + P ++ L + L+ L A L L + +L L+
Sbjct: 78 NLAGVRM-TPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN 136
Query: 249 GLSRLPANTF-----HRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISR 303
L H + L +S+NPL A A+L E L
Sbjct: 137 SLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLM--EGLAG------------- 181
Query: 304 STFLKMTSLKTLILSGNKL-----ETLESGLFQNLTHLSVLELNNCGLT----RLNETVF 354
TS+ L L L E L + L +N L L + G
Sbjct: 182 -----NTSVTHLSLLHTGLGDEGLELLAAQLDRN-RQLQELNVAYNGAGDTAALALARAA 235
Query: 355 HENYTYPDLEELRLSGNPL 373
E+ + LE L L N L
Sbjct: 236 REHPS---LELLHLYFNEL 251
Score = 54.7 bits (132), Expect = 5e-08
Identities = 37/285 (12%), Positives = 67/285 (23%), Gaps = 54/285 (18%)
Query: 16 NPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFF-----------TNLT 64
L +NL + P +VA L L ++N
Sbjct: 71 LSSLRQLNLAGVRMTP-VKCTVVAAVLG---SGRHALDEVNLASCQLDPAGLRTLLPVFL 126
Query: 65 TLNKLDLSGNPL-----RIIEPGVFDPLTSLEYLMLNRCNLT-----YISPSAFDNLNHL 114
KL L N L + + + + L L+ LT + +
Sbjct: 127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLM-EGLAGNTSV 185
Query: 115 KTLELSQNKLKSHIDWTL--VLGNLGKLDTLDLRQSGISNLP----DNVFANNTWLRNLN 168
L L L L L +L L++ +G + + L L+
Sbjct: 186 THLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLH 245
Query: 169 LAENELID-----LDVATTLGQNLVHLDSLDLSNCH------------LKGP--LSEDAF 209
L NEL L + + +
Sbjct: 246 LYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARV 305
Query: 210 VNATKLRTLYLSGNPLS---AADLSVALKPLTKLHRLSLRNCGLS 251
+L L + + + L+ ++ L +
Sbjct: 306 QRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSG 350
Score = 42.8 bits (101), Expect = 3e-04
Identities = 28/125 (22%), Positives = 46/125 (36%), Gaps = 19/125 (15%)
Query: 418 DLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKID-----YLPPNVFNNTRNITSL 472
L+E+ L+ L LLP R R L L + L + ++ IT+L
Sbjct: 102 ALDEVNLASCQLDPAGLRTLLP-VFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTL 160
Query: 473 NLANNNLSMTSELSFQFL-DVLLE---LESLDLSNNNLT-----HISPTVLRHNRAITSI 523
L+NN L+ L + L + L L + L ++ L NR + +
Sbjct: 161 RLSNNPLT---AAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA-QLDRNRQLQEL 216
Query: 524 KLVGN 528
+ N
Sbjct: 217 NVAYN 221
Score = 41.6 bits (98), Expect = 6e-04
Identities = 28/126 (22%), Positives = 48/126 (38%), Gaps = 22/126 (17%)
Query: 419 LEELRLSGNPL---HVLPTGNLLPPQLSRLRSLDLSRCKIDY------LPPNVFNNTRNI 469
L +L L+G + +L L ++L+ C++D LP
Sbjct: 74 LRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVF-----LRA 128
Query: 470 TSLNLANNNLSMTS--ELSFQFLDVLLELESLDLSNNNLT-----HISPTVLRHNRAITS 522
L L N+L + +L L ++ +L LSNN LT + L N ++T
Sbjct: 129 RKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLM-EGLAGNTSVTH 187
Query: 523 IKLVGN 528
+ L+
Sbjct: 188 LSLLHT 193
Score = 40.9 bits (96), Expect = 0.001
Identities = 23/132 (17%), Positives = 47/132 (35%), Gaps = 30/132 (22%)
Query: 419 LEELRLSGNPL---HVLPTGNLLPPQLSRLRSLDLSRCKI---------DYLPPNVFNNT 466
+L L N L +LL ++ +L LS + + L N
Sbjct: 128 ARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGN----- 182
Query: 467 RNITSLNLANNNLSMTSELSFQFLDVLLE----LESLDLSNNNLT-----HISPTVLRHN 517
++T L+L + L + + L L+ L+ L+++ N ++ R +
Sbjct: 183 TSVTHLSLLHTGLG---DEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALA-RAAREH 238
Query: 518 RAITSIKLVGNP 529
++ + L N
Sbjct: 239 PSLELLHLYFNE 250
Score = 39.7 bits (93), Expect = 0.002
Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 14/98 (14%)
Query: 442 LSRLRSLDLSRCKID-----YLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLEL 496
LS LR L+L+ ++ + + + + +NLA+ L L V L
Sbjct: 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLD--PAGLRTLLPVFLRA 128
Query: 497 ESLDLSNNNLT-----HISPTVLRHNRA-ITSIKLVGN 528
L L N+L + +L H++ IT+++L N
Sbjct: 129 RKLGLQLNSLGPEACKDLR-DLLLHDQCQITTLRLSNN 165
Score = 37.0 bits (86), Expect = 0.016
Identities = 56/278 (20%), Positives = 84/278 (30%), Gaps = 85/278 (30%)
Query: 264 LQELDISHNPLIDAFTALLSPLESLEHLDMGY-SNLQRISRSTFLKMTSLKTLILSGNKL 322
L+ L +L P E L+HL Y QR S ++SL+ L L+G ++
Sbjct: 28 LENAQAIKKKLGKLGRQVLPPSELLDHLFFHYEFQNQRFSAEV---LSSLRQLNLAGVRM 84
Query: 323 -----ETLESGLFQNLTHLSVLELNNCGLT-----RLNETVFHENYTYPDLEELRLSGNP 372
+ + L L + L +C L L +L L N
Sbjct: 85 TPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLR-------ARKLGLQLNS 137
Query: 373 LHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPL--- 429
L P++ K L + + H+ + LRLS NPL
Sbjct: 138 L--GPEACK----------------------DLRDLLLHDQCQ---ITTLRLSNNPLTAA 170
Query: 430 ------HVLPTGNLLPPQLSRLRSLDLSRCKI---------DYLPPNVFNNTRNITSLNL 474
L N + + L L + L N R + LN+
Sbjct: 171 GVAVLMEGLAG-N------TSVTHLSLLHTGLGDEGLELLAAQLDRN-----RQLQELNV 218
Query: 475 ANNNLSMTSELSFQFLDVLLE----LESLDLSNNNLTH 508
A N + + L LE L L N L+
Sbjct: 219 AYNGAG---DTAALALARAAREHPSLELLHLYFNELSS 253
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 72.9 bits (178), Expect = 1e-13
Identities = 40/213 (18%), Positives = 69/213 (32%), Gaps = 22/213 (10%)
Query: 19 LITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRI 78
L L+ ++ + L L + T + + LD
Sbjct: 351 LFRCELSVEKSTVLQSELESCKELQELE------PENKWCLLTIILLMRALDPLLYEKET 404
Query: 79 IEPGVFDPLTSLEYLML-----NRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLV 133
++ F L +++ + R + ++ L L+ L
Sbjct: 405 LQY--FSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH---- 458
Query: 134 LGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSL 193
L L + LDL + + LP A L L ++N L ++D + NL L L
Sbjct: 459 LEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVD---GVA-NLPRLQEL 513
Query: 194 DLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLS 226
L N L+ + V+ +L L L GN L
Sbjct: 514 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546
Score = 67.9 bits (165), Expect = 6e-12
Identities = 48/301 (15%), Positives = 86/301 (28%), Gaps = 42/301 (13%)
Query: 42 LLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLT 101
L + + +T + + L L L+ +
Sbjct: 304 LPAASLNDQLPQHTFRVIWTGSDSQKECVLL-KDRPECWCRDSATDEQLFRCELS-VEKS 361
Query: 102 YISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANN 161
+ S ++ L+ LE I + + LD L + + +
Sbjct: 362 TVLQSELESCKELQELEPENKWCLLTI-----ILLMRALDPLLYEKETLQYF--STLKAV 414
Query: 162 TWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLS 221
+R L + L + L + L L++ L + + + L LS
Sbjct: 415 DPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLL---VTHLDLS 471
Query: 222 GNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTAL 281
N L L AL L L L + L + LQEL + +N
Sbjct: 472 HNRLR--ALPPALAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNN--------R 519
Query: 282 LSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGN---KLETLESGLFQNLTHLSV 338
L +++ L L L L GN + E ++ L + L +S
Sbjct: 520 LQQSAAIQPLV---------------SCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 564
Query: 339 L 339
+
Sbjct: 565 I 565
Score = 66.7 bits (162), Expect = 1e-11
Identities = 49/317 (15%), Positives = 94/317 (29%), Gaps = 33/317 (10%)
Query: 86 PLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNL-------G 138
+ ++ L+ + + TL L ++ ++W G
Sbjct: 243 DVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLC 302
Query: 139 KLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLD------- 191
L L + ++ + + L ++ + + L +
Sbjct: 303 DLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKST 362
Query: 192 ---SLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNC 248
S S L+ E+ + T + + L + L + +
Sbjct: 363 VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 422
Query: 249 GLSRLPAN-----TFHRFTCLQELDISHNPLIDAFTAL--LSPLESLEHLDMGYSNLQRI 301
R + ++ L ++H L T L L L + HLD+ ++ L+ +
Sbjct: 423 DDLRSKFLLENSVLKMEYADVRVLHLAHKDL----TVLCHLEQLLLVTHLDLSHNRLRAL 478
Query: 302 SRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYP 361
+ L+ L S N LE ++ NL L L L N L + + P
Sbjct: 479 P-PALAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNNRLQQSAA--IQPLVSCP 533
Query: 362 DLEELRLSGNPLHVLPD 378
L L L GN L
Sbjct: 534 RLVLLNLQGNSLCQEEG 550
Score = 64.4 bits (156), Expect = 7e-11
Identities = 46/269 (17%), Positives = 79/269 (29%), Gaps = 22/269 (8%)
Query: 254 PANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLK----M 309
+ +R + + D+ L D + L + + +
Sbjct: 289 TPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATD 348
Query: 310 TSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLS 369
L LS K L+S ++ L LE N L + E+ L
Sbjct: 349 EQLFRCELSVEKSTVLQS-ELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQ 406
Query: 370 G-------NPLHVLPDSTKQYS--MRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLE 420
+P+ + + ++ ++ L + TV +
Sbjct: 407 YFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVT 466
Query: 421 ELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLS 480
L LS N L LP L L L S ++ + N + L L NN L
Sbjct: 467 HLDLSHNRLRALPPALA---ALRCLEVLQASDNALENVDG--VANLPRLQELLLCNNRLQ 521
Query: 481 MTSELSFQFLDVLLELESLDLSNNNLTHI 509
++ + Q L L L+L N+L
Sbjct: 522 QSAAI--QPLVSCPRLVLLNLQGNSLCQE 548
Score = 49.0 bits (116), Expect = 5e-06
Identities = 37/244 (15%), Positives = 74/244 (30%), Gaps = 35/244 (14%)
Query: 264 LQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLE 323
L ++S + L + L+ L+ + L +
Sbjct: 351 LFRCELSVEKS-TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFS 409
Query: 324 TLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQY 383
TL++ +L L + + Y D+ L L+ L VL
Sbjct: 410 TLKAVDPMRAAYLDDLRSKFLLENSVLK------MEYADVRVLHLAHKDLTVLC------ 457
Query: 384 SMRTIPTQIWKNFDFLVILFILN------ETVFHENYTYPDLEELRLSGNPLHVLPTGNL 437
+ + L+++ L+ + LE L+ S N L + +
Sbjct: 458 -----------HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD--GV 504
Query: 438 LPPQLSRLRSLDLSRCKIDYLP-PNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLEL 496
L RL+ L L ++ + + LNL N+L + + ++L +
Sbjct: 505 --ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 562
Query: 497 ESLD 500
S+
Sbjct: 563 SSIL 566
Score = 41.3 bits (96), Expect = 0.001
Identities = 35/187 (18%), Positives = 59/187 (31%), Gaps = 14/187 (7%)
Query: 350 NETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETV 409
+ + E + L P DS + + K+ L E
Sbjct: 316 HTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQ 375
Query: 410 FHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNI 469
E L + L L L S L+++D R + F ++
Sbjct: 376 ELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSV 435
Query: 470 --------TSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAIT 521
L+LA+ +L+ L+ LL + LDLS+N L + P L R +
Sbjct: 436 LKMEYADVRVLHLAHKDLT-----VLCHLEQLLLVTHLDLSHNRLRAL-PPALAALRCLE 489
Query: 522 SIKLVGN 528
++ N
Sbjct: 490 VLQASDN 496
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 71.2 bits (174), Expect = 7e-13
Identities = 100/599 (16%), Positives = 167/599 (27%), Gaps = 230/599 (38%)
Query: 24 LNANPIQP-------VEGAFLVARSLLYLYMQECTLSKINPQFFTNLTT-LNKLDLSGNP 75
++A +P +E LV + ++ Q L + QF L P
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFFIASQ---LQE---QFNKILPEPTEGFAADDEP 54
Query: 76 LRIIEPGVFDPLTS--LEYLMLNRCNLTYISPS---AFDN-----LNHLKTLELSQNKLK 125
E L L Y+ + + PS FD L + L N +
Sbjct: 55 TTPAE------LVGKFLGYVS------SLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI- 101
Query: 126 SHIDWTLVLGNLGKLDTLDLRQSGI----------SNLPDNVFANNTWLRNLNLAENELI 175
H L L + DT ++ + + P + +N+ R + +L+
Sbjct: 102 -H---ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLV 157
Query: 176 DLDVATTL--GQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVA 233
+ GQ G ++D F +LR LY + + L
Sbjct: 158 ------AIFGGQ----------------GN-TDDYF---EELRDLYQTYHVL-------- 183
Query: 234 LKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDI-------SHNPLIDAF-TALLS-P 284
+ L K +L L R + FT Q L+I S+ P D + +S P
Sbjct: 184 VGDLIKFSAETLSE--LIRTTLDAEKVFT--QGLNILEWLENPSNTPDKDYLLSIPISCP 239
Query: 285 ---LESLEH-------LDMGYSNLQRISRST---------------------FLKMTS-- 311
+ L H L L+ + F
Sbjct: 240 LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA 299
Query: 312 LKTLILSGNKLE--------TLESGLFQ-NLTH--------LSVLELNNCGLTR--LNET 352
+ L G + +L + + +L + LS+ LT+ + +
Sbjct: 300 ITVLFFIG--VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI-----SNLTQEQVQDY 352
Query: 353 VFHENYTYPDLEELRLS-----------GNP--LHVL---------PDSTKQ----YSMR 386
V N P +++ +S G P L+ L P Q +S R
Sbjct: 353 VNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER 412
Query: 387 TIPTQIWKNFDFLVILFILNETV-FHENYTYP-------DLE--ELRLSGNPLHVLP--- 433
+ FL + FH + P DL + + + + P
Sbjct: 413 KLKFSN----RFLPV------ASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI-PVYD 461
Query: 434 --TGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNL---ANNNLSMTSELSF 487
G S LR L S + + I L + T L F
Sbjct: 462 TFDG-------SDLRVLSGS------ISERIV---DCIIRLPVKWETTTQFKATHILDF 504
Score = 34.3 bits (78), Expect = 0.18
Identities = 22/108 (20%), Positives = 33/108 (30%), Gaps = 33/108 (30%)
Query: 2 WQGH----PVYN-----DRRNLDNPGLITINLNANPI--QPVEGAFLVARSLLYLYMQEC 50
+ PVY+ D R L G I+ + + I PV +
Sbjct: 450 FNAKDIQIPVYDTFDGSDLRVLS--GSISERI-VDCIIRLPV-------------KWETT 493
Query: 51 TLSKIN------PQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEY 92
T K P + L L + G +R+I G D +Y
Sbjct: 494 TQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDY 541
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich
repeat, LRR, system; 2.10A {Petromyzon marinus}
Length = 174
Score = 66.1 bits (162), Expect = 7e-13
Identities = 27/63 (42%), Positives = 35/63 (55%)
Query: 64 TTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNK 123
T +L L+ N + +EPGVFD L +L+ L N LT I FD L L L+L+ N
Sbjct: 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92
Query: 124 LKS 126
LKS
Sbjct: 93 LKS 95
Score = 62.3 bits (152), Expect = 2e-11
Identities = 30/79 (37%), Positives = 40/79 (50%)
Query: 44 YLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYI 103
L++ ++K+ P F +L L +L + N L I GVFD LT L L LN +L I
Sbjct: 37 RLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI 96
Query: 104 SPSAFDNLNHLKTLELSQN 122
AFDNL L + L N
Sbjct: 97 PRGAFDNLKSLTHIYLYNN 115
Score = 52.3 bits (126), Expect = 5e-08
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 446 RSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNN 505
+ L L+ +I L P VF++ N+ L +N L+ F D L +L LDL++N+
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVF---DKLTQLTQLDLNDNH 92
Query: 506 LTHISPTVLRHNRAITSIKLVGNPWKCDCN 535
L I + +++T I L NPW C+C
Sbjct: 93 LKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122
Score = 46.9 bits (112), Expect = 3e-06
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 287 SLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGL 346
+ L + + + ++ F + +L+ L + NKL + +G+F LT L+ L+LN+ L
Sbjct: 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93
Query: 347 TRLNETVFHENYTYPDLEELRLSGNP 372
+ F +N L + L NP
Sbjct: 94 KSIPRGAF-DNLK--SLTHIYLYNNP 116
Score = 46.5 bits (111), Expect = 4e-06
Identities = 29/74 (39%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 23 NLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEP 81
LN N I +E G F +L LY L+ I F LT L +LDL+ N L+ I
Sbjct: 39 WLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPR 98
Query: 82 GVFDPLTSLEYLML 95
G FD L SL ++ L
Sbjct: 99 GAFDNLKSLTHIYL 112
Score = 44.2 bits (105), Expect = 3e-05
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 310 TSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLS 369
T + L L+ N++ LE G+F +L +L L N+ LT + VF + T L +L L+
Sbjct: 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVF-DKLT--QLTQLDLN 89
Query: 370 GNPLHVLPD 378
N L +P
Sbjct: 90 DNHLKSIPR 98
Score = 43.8 bits (104), Expect = 4e-05
Identities = 31/137 (22%), Positives = 46/137 (33%), Gaps = 53/137 (38%)
Query: 88 TSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQ 147
T + L LN +T + P FD+L +L+ L + NKL +
Sbjct: 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA--------------------- 71
Query: 148 SGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSED 207
+P VF T L L+L +N L +++
Sbjct: 72 -----IPTGVFDKLTQLTQLDLNDNHL----------KSIPR-----------------G 99
Query: 208 AFVNATKLRTLYLSGNP 224
AF N L +YL NP
Sbjct: 100 AFDNLKSLTHIYLYNNP 116
Score = 41.9 bits (99), Expect = 2e-04
Identities = 28/106 (26%), Positives = 40/106 (37%), Gaps = 24/106 (22%)
Query: 238 TKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSN 297
T RL L N +++L F LQ+L + N
Sbjct: 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN------------------------K 68
Query: 298 LQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNN 343
L I F K+T L L L+ N L+++ G F NL L+ + L N
Sbjct: 69 LTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYN 114
Score = 37.2 bits (87), Expect = 0.006
Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 25/108 (23%)
Query: 213 TKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHN 272
T + L+L+ N ++ + V L L +L + L+ +P F + T L +LD++ N
Sbjct: 33 TDKQRLWLNNNQITKLEPGVFDH-LVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91
Query: 273 PLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGN 320
+L+ I R F + SL + L N
Sbjct: 92 ------------------------HLKSIPRGAFDNLKSLTHIYLYNN 115
Score = 36.1 bits (84), Expect = 0.015
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 191 DSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGL 250
L L+N + L F + L+ LY + N L+A V K LT+L +L L + L
Sbjct: 36 QRLWLNNNQITK-LEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDK-LTQLTQLDLNDNHL 93
Query: 251 SRLPANTFHRFTCLQELDISHNP 273
+P F L + + +NP
Sbjct: 94 KSIPRGAFDNLKSLTHIYLYNNP 116
Score = 30.7 bits (70), Expect = 0.84
Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 419 LEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANN 477
L++L + N L +PTG + +L++L LDL+ + +P F+N +++T + L NN
Sbjct: 59 LQQLYFNSNKLTAIPTG--VFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 66.1 bits (162), Expect = 8e-13
Identities = 28/63 (44%), Positives = 34/63 (53%)
Query: 64 TTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNK 123
TT L L N + +EPGVFD LT L L L+ LT + FD L L L L+ N+
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 124 LKS 126
LKS
Sbjct: 90 LKS 92
Score = 62.2 bits (152), Expect = 1e-11
Identities = 33/79 (41%), Positives = 42/79 (53%)
Query: 44 YLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYI 103
LY+ + ++K+ P F LT L +LDL N L ++ GVFD LT L L LN L I
Sbjct: 34 VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI 93
Query: 104 SPSAFDNLNHLKTLELSQN 122
AFDNL L + L N
Sbjct: 94 PRGAFDNLKSLTHIWLLNN 112
Score = 53.8 bits (130), Expect = 2e-08
Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 8/116 (6%)
Query: 420 EELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNL 479
+ SG L +PTG +P + + L L +I L P VF+ +T L+L NN L
Sbjct: 12 TTVDCSGKSLASVPTG--IP---TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL 66
Query: 480 SMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCN 535
++ F D L +L L L++N L I + +++T I L+ NPW C C+
Sbjct: 67 TVLPAGVF---DKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119
Score = 46.8 bits (112), Expect = 3e-06
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 287 SLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGL 346
+ + L + + + ++ F ++T L L L N+L L +G+F LT L+ L LN+ L
Sbjct: 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90
Query: 347 TRLNETVFHENYTYPDLEELRLSGNP 372
+ F +N L + L NP
Sbjct: 91 KSIPRGAF-DNLK--SLTHIWLLNNP 113
Score = 46.1 bits (110), Expect = 6e-06
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 23 NLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEP 81
L N I +E G F L L + L+ + F LT L +L L+ N L+ I
Sbjct: 36 YLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPR 95
Query: 82 GVFDPLTSLEYLML 95
G FD L SL ++ L
Sbjct: 96 GAFDNLKSLTHIWL 109
Score = 44.9 bits (107), Expect = 1e-05
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 310 TSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLS 369
T+ + L L N++ LE G+F LT L+ L+L+N LT L VF + T L +L L+
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVF-DKLT--QLTQLSLN 86
Query: 370 GNPLHVLPD 378
N L +P
Sbjct: 87 DNQLKSIPR 95
Score = 43.0 bits (102), Expect = 6e-05
Identities = 30/137 (21%), Positives = 44/137 (32%), Gaps = 53/137 (38%)
Query: 88 TSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQ 147
T+ + L L +T + P FD L L L+L N+L
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV--------------------- 68
Query: 148 SGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSED 207
LP VF T L L+L +N+L +++
Sbjct: 69 -----LPAGVFDKLTQLTQLSLNDNQL----------KSIPR-----------------G 96
Query: 208 AFVNATKLRTLYLSGNP 224
AF N L ++L NP
Sbjct: 97 AFDNLKSLTHIWLLNNP 113
Score = 42.2 bits (100), Expect = 1e-04
Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 24/106 (22%)
Query: 238 TKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSN 297
T L L + +++L F R T L LD+ +N
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN------------------------Q 65
Query: 298 LQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNN 343
L + F K+T L L L+ N+L+++ G F NL L+ + L N
Sbjct: 66 LTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLN 111
Score = 38.8 bits (91), Expect = 0.002
Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 25/108 (23%)
Query: 213 TKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHN 272
T + LYL N ++ + V + LT+L RL L N L+ LPA F + T L +L ++ N
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDR-LTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88
Query: 273 PLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGN 320
L+ I R F + SL + L N
Sbjct: 89 ------------------------QLKSIPRGAFDNLKSLTHIWLLNN 112
Score = 35.7 bits (83), Expect = 0.018
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Query: 191 DSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGL 250
L L + + L F T+L L L N L+ V K LT+L +LSL + L
Sbjct: 33 QVLYLYDNQITK-LEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDK-LTQLTQLSLNDNQL 90
Query: 251 SRLPANTFHRFTCLQELDISHNP 273
+P F L + + +NP
Sbjct: 91 KSIPRGAFDNLKSLTHIWLLNNP 113
Score = 30.7 bits (70), Expect = 0.89
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 419 LEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANN 477
L L L N L VLP G + +L++L L L+ ++ +P F+N +++T + L NN
Sbjct: 56 LTRLDLDNNQLTVLPAG--VFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 65.1 bits (159), Expect = 3e-12
Identities = 41/173 (23%), Positives = 65/173 (37%), Gaps = 12/173 (6%)
Query: 66 LNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYIS--PSAFDNLNHLKTLELSQNK 123
+ K + +RI E T E + L+ + I + L K L LS N
Sbjct: 1 MAKATTIKDAIRIFEERKSVVATEAEKVELH-GMIPPIEKMDATLSTLKACKHLALSTNN 59
Query: 124 LKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTL 183
++ I L + L L L ++ I + +N+ A L L ++ N++ L
Sbjct: 60 IEK-IS---SLSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASLSGI--- 111
Query: 184 GQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKP 236
+ LV+L L +SN + D KL L L+GNPL
Sbjct: 112 -EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATS 163
Score = 58.5 bits (142), Expect = 5e-10
Identities = 30/146 (20%), Positives = 54/146 (36%), Gaps = 9/146 (6%)
Query: 42 LLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLT 101
+ L+ + K++ + L L LS N + I + +L L L R +
Sbjct: 27 KVELHGMIPPIEKMDATL-STLKACKHLALSTNNIEKISS--LSGMENLRILSLGRNLIK 83
Query: 102 YISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPD-NVFAN 160
I + L+ L +S N++ S + + L L L + + I+N + + A
Sbjct: 84 KIENL-DAVADTLEELWISYNQIAS-LS---GIEKLVNLRVLYMSNNKITNWGEIDKLAA 138
Query: 161 NTWLRNLNLAENELIDLDVATTLGQN 186
L +L LA N L +
Sbjct: 139 LDKLEDLLLAGNPLYNDYKENNATSE 164
Score = 57.4 bits (139), Expect = 1e-09
Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 11/116 (9%)
Query: 415 TYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNL 474
T + L LS N + + +L + LR L L R I + N+ + L +
Sbjct: 46 TLKACKHLALSTNNIEKI--SSL--SGMENLRILSLGRNLIKKIE-NLDAVADTLEELWI 100
Query: 475 ANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISP-TVLRHNRAITSIKLVGNP 529
+ N ++ S ++ L+ L L +SNN +T+ L + + L GNP
Sbjct: 101 SYNQIA-----SLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151
Score = 50.5 bits (121), Expect = 3e-07
Identities = 27/133 (20%), Positives = 56/133 (42%), Gaps = 6/133 (4%)
Query: 13 NLDNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLS 72
+ ++ PI+ ++ ++ +L + + KI+ + + L L L
Sbjct: 21 VATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS--LSGMENLRILSLG 78
Query: 73 GNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTL 132
N ++ IE + +LE L ++ + +S + L +L+ L +S NK+ +
Sbjct: 79 RNLIKKIE-NLDAVADTLEELWISYNQIASLSG--IEKLVNLRVLYMSNNKITN-WGEID 134
Query: 133 VLGNLGKLDTLDL 145
L L KL+ L L
Sbjct: 135 KLAALDKLEDLLL 147
Score = 44.3 bits (105), Expect = 4e-05
Identities = 28/188 (14%), Positives = 55/188 (29%), Gaps = 34/188 (18%)
Query: 137 LGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLS 196
+ K T+ V + L+ + +D L L LS
Sbjct: 1 MAKATTIKDAIRIFEERKSVVATEAEKVE-LHGMIPPIEKMD---ATLSTLKACKHLALS 56
Query: 197 NCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPAN 256
+++ + LR L L N + + L L + ++ L
Sbjct: 57 TNNIE---KISSLSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISYNQIASLSG- 110
Query: 257 TFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLI 316
+ L+ L +S+N + + ++ L + L+ L+
Sbjct: 111 -IEKLVNLRVLYMSNNKITN--------WGEIDKLA---------------ALDKLEDLL 146
Query: 317 LSGNKLET 324
L+GN L
Sbjct: 147 LAGNPLYN 154
Score = 43.9 bits (104), Expect = 5e-05
Identities = 38/181 (20%), Positives = 67/181 (37%), Gaps = 35/181 (19%)
Query: 282 LSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLEL 341
+ E +E L ++++ +T + + K L LS N +E + L + +L +L L
Sbjct: 22 ATEAEKVE-LHGMIPPIEKMD-ATLSTLKACKHLALSTNNIEKIS-SL-SGMENLRILSL 77
Query: 342 NNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVI 401
+ ++ + + LEEL +S N + L + L +
Sbjct: 78 GRNLIKKIE----NLDAVADTLEELWISYNQIASLSG--------------IEKLVNLRV 119
Query: 402 L-----FILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQ--------LSRLRSL 448
L I N + LE+L L+GNPL+ N + L L+ L
Sbjct: 120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179
Query: 449 D 449
D
Sbjct: 180 D 180
Score = 35.8 bits (83), Expect = 0.025
Identities = 15/88 (17%), Positives = 28/88 (31%), Gaps = 17/88 (19%)
Query: 447 SLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNL 506
L I+ + + + + L L+ NN+ L + L L L N +
Sbjct: 29 ELHGMIPPIEKMDATL-STLKACKHLALSTNNIE-----KISSLSGMENLRILSLGRNLI 82
Query: 507 THISPT----------VLRHNRAITSIK 524
I + +N+ I S+
Sbjct: 83 KKIENLDAVADTLEELWISYNQ-IASLS 109
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 62.0 bits (151), Expect = 2e-11
Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 7/116 (6%)
Query: 264 LQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLE 323
+ELD+ I L + L+ + +D + ++++ F + LKTL+++ N++
Sbjct: 21 DRELDLRGY-KIPVIENLGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRIC 77
Query: 324 TLESGLFQNLTHLSVLELNNCGLTRLNE-TVFHENYTYPDLEELRLSGNPLHVLPD 378
+ GL Q L L+ L L N L L + L L + NP+
Sbjct: 78 RIGEGLDQALPDLTELILTNNSLVELGDLDPLASL---KSLTYLCILRNPVTNKKH 130
Score = 60.1 bits (146), Expect = 1e-10
Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 7/119 (5%)
Query: 108 FDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNL 167
+ N + L+L K+ I+ + L + D +D + I L F L+ L
Sbjct: 15 YTNAVRDRELDLRGYKIPV-IEN--LGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTL 69
Query: 168 NLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLS 226
+ N + + L Q L L L L+N L D + L L + NP++
Sbjct: 70 LVNNNRICRIG--EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126
Score = 59.3 bits (144), Expect = 2e-10
Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 6/120 (5%)
Query: 60 FTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLEL 119
+TN +LDL G + +IE + L + + + + + F L LKTL +
Sbjct: 15 YTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLV 71
Query: 120 SQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPD-NVFANNTWLRNLNLAENELIDLD 178
+ N++ + + L L L L + + L D + A+ L L + N + +
Sbjct: 72 NNNRICRIGEG--LDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 129
Score = 58.5 bits (142), Expect = 4e-10
Identities = 28/133 (21%), Positives = 50/133 (37%), Gaps = 5/133 (3%)
Query: 23 NLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPG 82
L A I+ + A L ++ + I L + +D S N +R ++
Sbjct: 3 KLTAELIEQAAQ-YTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLDG- 59
Query: 83 VFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDT 142
F L L+ L++N + I L L L L+ N L + L +L L
Sbjct: 60 -FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTY 117
Query: 143 LDLRQSGISNLPD 155
L + ++ ++N
Sbjct: 118 LCILRNPVTNKKH 130
Score = 54.7 bits (132), Expect = 7e-09
Identities = 24/142 (16%), Positives = 49/142 (34%), Gaps = 5/142 (3%)
Query: 9 NDRRNLDNP-GLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLN 67
N ++L I +E + + + K+ F L L
Sbjct: 10 EQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLK 67
Query: 68 KLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISP-SAFDNLNHLKTLELSQNKLKS 126
L ++ N + I G+ L L L+L +L + +L L L + +N + +
Sbjct: 68 TLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN 127
Query: 127 HID-WTLVLGNLGKLDTLDLRQ 147
V+ + ++ LD ++
Sbjct: 128 KKHYRLYVIYKVPQVRVLDFQK 149
Score = 54.7 bits (132), Expect = 9e-09
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 6/96 (6%)
Query: 415 TYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNL 474
T + + S N + L P L RL++L ++ +I + + ++T L L
Sbjct: 40 TLDQFDAIDFSDNEIRKL--DGF--PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95
Query: 475 ANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHIS 510
NN+L +L L L L L + N +T+
Sbjct: 96 TNNSLVELGDLD--PLASLKSLTYLCILRNPVTNKK 129
Score = 47.7 bits (114), Expect = 2e-06
Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
Query: 441 QLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLD 500
R R LDL KI + N+ +++ ++N + +L L++L
Sbjct: 17 NAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIR-----KLDGFPLLRRLKTLL 70
Query: 501 LSNNNLTHISPTVLRHNRAITSIKLVGN 528
++NN + I + + +T + L N
Sbjct: 71 VNNNRICRIGEGLDQALPDLTELILTNN 98
Score = 39.3 bits (92), Expect = 0.001
Identities = 18/145 (12%), Positives = 48/145 (33%), Gaps = 27/145 (18%)
Query: 291 LDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLN 350
+ + +++ ++ + + L L G K+ +E L L ++ ++ + +L
Sbjct: 2 VKLTAELIEQAAQ--YTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKL- 57
Query: 351 ETVFHENYTY-PDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVIL-----FI 404
+ + L+ L ++ N + + + Q L L +
Sbjct: 58 -----DGFPLLRRLKTLLVNNNRICRIGEGLDQ------------ALPDLTELILTNNSL 100
Query: 405 LNETVFHENYTYPDLEELRLSGNPL 429
+ + L L + NP+
Sbjct: 101 VELGDLDPLASLKSLTYLCILRNPV 125
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR,
cell cycle, protein turnover COM ligase-ligase inhibitor
complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1
c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Length = 336
Score = 63.7 bits (155), Expect = 5e-11
Identities = 39/195 (20%), Positives = 72/195 (36%), Gaps = 10/195 (5%)
Query: 187 LVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLR 246
L+ + + +++ + LS + + + L L +KL LSL
Sbjct: 67 LLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126
Query: 247 NCGLSRLPANTFHRFTCLQELDISHNPLI--DAFTALLSPLESLEHLDMGYSNL---QRI 301
LS NT + + L L++S A LLS L+ L++ + + +
Sbjct: 127 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHV 186
Query: 302 SRSTFLKMTSLKTLILSGNKLETLESG---LFQNLTHLSVLELNNCGLTRLNETVFHENY 358
+ ++ L LSG + +S L + +L L+L++ L F E +
Sbjct: 187 QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDS--VMLKNDCFQEFF 244
Query: 359 TYPDLEELRLSGNPL 373
L+ L LS
Sbjct: 245 QLNYLQHLSLSRCYD 259
Score = 62.6 bits (152), Expect = 1e-10
Identities = 45/204 (22%), Positives = 74/204 (36%), Gaps = 7/204 (3%)
Query: 97 RCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDW-TLVLGNLGKLDTLDLRQSGISNLPD 155
RC +++ ++ + + + + + +L KL L L +S+
Sbjct: 76 RCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIV 135
Query: 156 NVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFV--NAT 213
N A N+ L LNL+ TL + LD L+LS C V +
Sbjct: 136 NTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE 195
Query: 214 KLRTLYLSG--NPLSAADLSVALKPLTKLHRLSLRNC-GLSRLPANTFHRFTCLQELDIS 270
+ L LSG L +DLS ++ L L L + L F + LQ L +S
Sbjct: 196 TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLS 255
Query: 271 HNPLI-DAFTALLSPLESLEHLDM 293
I L + +L+ L +
Sbjct: 256 RCYDIIPETLLELGEIPTLKTLQV 279
Score = 61.8 bits (150), Expect = 2e-10
Identities = 41/238 (17%), Positives = 82/238 (34%), Gaps = 16/238 (6%)
Query: 21 TINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIE 80
T++L + P L+++ ++ C S ++ + + + + I
Sbjct: 51 TLDLTGKNLHPDVTGRLLSQGVIAFR---CPRSFMDQPLAEHFSPFRVQHMDLSNSVIEV 107
Query: 81 PG---VFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNL 137
+ + L+ L L L+ + ++L L LS S +L +
Sbjct: 108 STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 167
Query: 138 GKLDTLDLRQSGISNLPDNVFA-----NNTWLRNLNLAE-NELIDLDVATTLGQNLVHLD 191
+LD L+L S + + + + LNL+ + + +TL + +L
Sbjct: 168 SRLDELNL--SWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 225
Query: 192 SLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNP-LSAADLSVALKPLTKLHRLSLRNC 248
LDLS+ + F L+ L LS + L L + L L +
Sbjct: 226 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLL-ELGEIPTLKTLQVFGI 282
Score = 51.8 bits (124), Expect = 3e-07
Identities = 60/335 (17%), Positives = 109/335 (32%), Gaps = 45/335 (13%)
Query: 189 HLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNC 248
L +L + + +TL L+G L L R
Sbjct: 23 CLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFM 82
Query: 249 GLSRLPANTFHRFTCLQELDISHNPLID-AFTALLSPLESLEHLDMGYSNLQRISRSTFL 307
+ R +Q +D+S++ + +LS L++L + L +T
Sbjct: 83 DQPLAEHFSPFR---VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA 139
Query: 308 KMTSLKTLILSGNKLETLES--GLFQNLTHLSVLELNNC-GLTRLNETVFHENYTYPDLE 364
K ++L L LSG + + L + + L L L+ C T + V + + +
Sbjct: 140 KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS-ETIT 198
Query: 365 ELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRL 424
+L LSG + + P+L L L
Sbjct: 199 QLNLSG-----------------------------YRKNLQKSDLSTLVRRCPNLVHLDL 229
Query: 425 SGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSE 484
S + + QL+ L+ L LSRC + P I +L L +
Sbjct: 230 SDSV-MLKNDCFQEFFQLNYLQHLSLSRCYD--IIPETLLELGEIPTL----KTLQVFGI 282
Query: 485 LSFQFLDVLLE-LESLDLSNNNLTHISPTVLRHNR 518
+ L +L E L L ++ ++ T I+ + + +
Sbjct: 283 VPDGTLQLLKEALPHLQINCSHFTTIARPTIGNKK 317
Score = 34.5 bits (79), Expect = 0.10
Identities = 43/219 (19%), Positives = 75/219 (34%), Gaps = 33/219 (15%)
Query: 329 LFQNLTHLSVLELNNCGLT--RLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMR 386
L + L + EL R E+ L ++ PD T + +
Sbjct: 17 LLGIFSCLCLPELLKVSGVCKRWYRLASDESL------WQTLDLTGKNLHPDVTGRLLSQ 70
Query: 387 TIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLR 446
+ + E+++ ++ + LS + + V T + + Q S+L+
Sbjct: 71 GVI--------AFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEV-STLHGILSQCSKLQ 121
Query: 447 SLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLE----LESLDLS 502
+L L ++ N N+ L NLS S S L LL L+ L+LS
Sbjct: 122 NLSLEGLRLSDPIVNTLAKNSNLVRL-----NLSGCSGFSEFALQTLLSSCSRLDELNLS 176
Query: 503 N-NNLT--HISPTVLRHNRAITSIKLVGNPWKCDCNIAD 538
+ T H+ V + IT + L G N+
Sbjct: 177 WCFDFTEKHVQVAVAHVSETITQLNLSG----YRKNLQK 211
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 58.2 bits (141), Expect = 4e-10
Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 6/119 (5%)
Query: 62 NLTTLNKLDLSGNPLRIIE-PGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELS 120
+ +L L + G+ +LE+L L L +S L LK LELS
Sbjct: 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN--LPKLPKLKKLELS 79
Query: 121 QNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPD-NVFANNTWLRNLNLAENELIDLD 178
+N++ +D ++ L L L+L + + ++ L++L+L E+ +L+
Sbjct: 80 ENRIFGGLD--MLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN 136
Score = 57.4 bits (139), Expect = 8e-10
Identities = 31/113 (27%), Positives = 41/113 (36%), Gaps = 4/113 (3%)
Query: 43 LYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTY 102
L L + KI L L L L + L L+ L L+ +
Sbjct: 29 LVLDNCKSNDGKI-EGLTAEFVNLEFLSLINVGLISVSN--LPKLPKLKKLELSENRIFG 85
Query: 103 ISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPD 155
+ L +L L LS NKLK I L L L +LDL ++NL D
Sbjct: 86 GLDMLAEKLPNLTHLNLSGNKLKD-ISTLEPLKKLECLKSLDLFNCEVTNLND 137
Score = 56.3 bits (136), Expect = 2e-09
Identities = 34/159 (21%), Positives = 51/159 (32%), Gaps = 29/159 (18%)
Query: 184 GQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRL 243
+ + L L NC E L L L L + L L KL +L
Sbjct: 20 NRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVS---NLPKLPKLKKL 76
Query: 244 SLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISR 303
L + + L L++S N L D + +LE L
Sbjct: 77 ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD--------ISTLEPLK----------- 117
Query: 304 STFLKMTSLKTLILSGNKLETLE---SGLFQNLTHLSVL 339
K+ LK+L L ++ L +F+ L L+ L
Sbjct: 118 ----KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL 152
Score = 56.3 bits (136), Expect = 2e-09
Identities = 26/114 (22%), Positives = 43/114 (37%), Gaps = 7/114 (6%)
Query: 266 ELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETL 325
LD + L + +LE L + L +S K+ LK L LS N++
Sbjct: 30 VLDNCKSN-DGKIEGLTAEFVNLEFLSLINVGLISVSN--LPKLPKLKKLELSENRIFGG 86
Query: 326 ESGLFQNLTHLSVLELNNCGLTRLNE-TVFHENYTYPDLEELRLSGNPLHVLPD 378
L + L +L+ L L+ L ++ + L+ L L + L D
Sbjct: 87 LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKL---ECLKSLDLFNCEVTNLND 137
Score = 55.1 bits (133), Expect = 4e-09
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 415 TYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNL 474
+ +LE L L L + NL P+L +L+ L+LS +I + N+T LNL
Sbjct: 47 EFVNLEFLSLINVGLISV--SNL--PKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102
Query: 475 ANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHIS 510
+ N L S L + L L L+SLDL N +T+++
Sbjct: 103 SGNKLKDISTL--EPLKKLECLKSLDLFNCEVTNLN 136
Score = 54.7 bits (132), Expect = 6e-09
Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 5/117 (4%)
Query: 110 NLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNL 169
++ L L K L L+ L L G+ ++ + L+ L L
Sbjct: 22 TPAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISVSN--LPKLPKLKKLEL 78
Query: 170 AENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLS 226
+EN + L + L +L L+LS LK + + L++L L ++
Sbjct: 79 SENRIFGGL--DMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133
Score = 43.6 bits (103), Expect = 5e-05
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 442 LSRLRSLDLSRCKIDYLP-PNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLD 500
+ +R L L CK + + N+ L+L N L S L L +L+ L+
Sbjct: 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-----SVSNLPKLPKLKKLE 77
Query: 501 LSNNNLTHISPTVLRHNRAITSIKLVGN 528
LS N + + +T + L GN
Sbjct: 78 LSENRIFGGLDMLAEKLPNLTHLNLSGN 105
Score = 36.6 bits (85), Expect = 0.010
Identities = 25/115 (21%), Positives = 42/115 (36%), Gaps = 9/115 (7%)
Query: 17 PGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPL 76
L ++L + V L L + E + L L L+LSGN
Sbjct: 49 VNLEFLSLINVGLISVSN-LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN-- 105
Query: 77 RIIEPGVFDPL---TSLEYLMLNRCNLTYIS---PSAFDNLNHLKTLELSQNKLK 125
++ + +PL L+ L L C +T ++ S F L L L+ + +
Sbjct: 106 KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB:
3rez_A*
Length = 130
Score = 56.4 bits (136), Expect = 8e-10
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 496 LESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEW 542
L L+ NNLT + P +L A+ + L NPW+CDC + + W
Sbjct: 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAW 79
Score = 44.0 bits (104), Expect = 1e-05
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Query: 64 TTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNR------CNLTYIS 104
+L L+GN L + PG+ D L +L L C L +
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLR 77
Score = 40.2 bits (94), Expect = 3e-04
Identities = 19/81 (23%), Positives = 24/81 (29%), Gaps = 11/81 (13%)
Query: 310 TSLKTLILSGNKLETLESGLFQNLTHLSVLELNN------CGLTRLNETVFHENYTYPDL 363
L+L+GN L L GL L L L C L L + P
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERAPYR 90
Query: 364 EE-----LRLSGNPLHVLPDS 379
+ L G L L +
Sbjct: 91 DLRCVAPPALRGRLLPYLAED 111
Score = 34.4 bits (79), Expect = 0.032
Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 8/63 (12%)
Query: 418 DLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSR------CKIDYLPPNVFNNTRNITS 471
D EL L+GN L LP G L L LR+ L C++ L +
Sbjct: 32 DTTELVLTGNNLTALPPGLL--DALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERAPY 89
Query: 472 LNL 474
+L
Sbjct: 90 RDL 92
Score = 34.0 bits (78), Expect = 0.043
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 88 TSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQN 122
L+L NLT + P D L L+T L N
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 31.7 bits (72), Expect = 0.29
Identities = 8/37 (21%), Positives = 11/37 (29%)
Query: 238 TKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPL 274
L L L+ LP L+ + NP
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67
Score = 31.3 bits (71), Expect = 0.37
Identities = 9/37 (24%), Positives = 12/37 (32%)
Query: 41 SLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLR 77
L + L+ + P L L L NP R
Sbjct: 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68
Score = 27.8 bits (62), Expect = 5.5
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 286 ESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGN 320
L + +NL + + +L+T L N
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 27.1 bits (60), Expect = 9.5
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 143 LDLRQSGISNLPDNVFANNTWLRNLNLAEN 172
L L + ++ LP + LR +L N
Sbjct: 36 LVLTGNNLTALPPGLLDALPALRTAHLGAN 65
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 56.2 bits (136), Expect = 1e-09
Identities = 27/114 (23%), Positives = 42/114 (36%), Gaps = 7/114 (6%)
Query: 266 ELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETL 325
LD S + L E LE L L I+ K+ LK L LS N++
Sbjct: 23 VLDNSRSNEG-KLEGLTDEFEELEFLSTINVGLTSIAN--LPKLNKLKKLELSDNRVSGG 79
Query: 326 ESGLFQNLTHLSVLELNNCGLTRLNE-TVFHENYTYPDLEELRLSGNPLHVLPD 378
L + +L+ L L+ + L+ + +L+ L L + L D
Sbjct: 80 LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKL---ENLKSLDLFNCEVTNLND 130
Score = 55.8 bits (135), Expect = 2e-09
Identities = 19/117 (16%), Positives = 45/117 (38%), Gaps = 5/117 (4%)
Query: 110 NLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNL 169
+ +K L L ++ + +L+ L G++++ + L+ L L
Sbjct: 15 TPSDVKELVLDNSRSNE-GKLEGLTDEFEELEFLSTINVGLTSIAN--LPKLNKLKKLEL 71
Query: 170 AENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLS 226
++N + L + +L L+LS +K + + L++L L ++
Sbjct: 72 SDNRVSGGL--EVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126
Score = 54.3 bits (131), Expect = 6e-09
Identities = 27/113 (23%), Positives = 38/113 (33%), Gaps = 4/113 (3%)
Query: 43 LYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTY 102
L L K+ L L L I L L+ L L+ ++
Sbjct: 22 LVLDNSRSNEGKL-EGLTDEFEELEFLSTINVGLTSIA--NLPKLNKLKKLELSDNRVSG 78
Query: 103 ISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPD 155
+ +L L LS NK+K L L L +LDL ++NL D
Sbjct: 79 GLEVLAEKCPNLTHLNLSGNKIKDLSTIE-PLKKLENLKSLDLFNCEVTNLND 130
Score = 53.5 bits (129), Expect = 1e-08
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 415 TYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNL 474
+ +LE L L + NL P+L++L+ L+LS ++ + N+T LNL
Sbjct: 40 EFEELEFLSTINVGLTSI--ANL--PKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95
Query: 475 ANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHIS 510
+ N + S + + L L L+SLDL N +T+++
Sbjct: 96 SGNKIKDLSTI--EPLKKLENLKSLDLFNCEVTNLN 129
Score = 52.0 bits (125), Expect = 4e-08
Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 6/112 (5%)
Query: 184 GQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRL 243
+ + L L N E +L L L+ ++ L L KL +L
Sbjct: 13 NRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT--SIAN-LPKLNKLKKL 69
Query: 244 SLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTAL--LSPLESLEHLDM 293
L + +S + L L++S N I + + L LE+L+ LD+
Sbjct: 70 ELSDNRVSGGLEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDL 120
Score = 47.7 bits (114), Expect = 1e-06
Identities = 29/136 (21%), Positives = 54/136 (39%), Gaps = 4/136 (2%)
Query: 11 RRNLDNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLD 70
R + + ++ + + +EG L +L L+ I L L KL+
Sbjct: 13 NRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN--LPKLNKLKKLE 70
Query: 71 LSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYIS-PSAFDNLNHLKTLELSQNKLKSHID 129
LS N + + + +L +L L+ + +S L +LK+L+L ++ + D
Sbjct: 71 LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130
Query: 130 -WTLVLGNLGKLDTLD 144
V L +L LD
Sbjct: 131 YRENVFKLLPQLTYLD 146
Score = 43.1 bits (102), Expect = 5e-05
Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
Query: 442 LSRLRSLDLSRCKIDYLP-PNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLD 500
S ++ L L + + + + + L+ N L+ S L L +L+ L+
Sbjct: 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-----SIANLPKLNKLKKLE 70
Query: 501 LSNNNLTHISPTVLRHNRAITSIKLVGN 528
LS+N ++ + +T + L GN
Sbjct: 71 LSDNRVSGGLEVLAEKCPNLTHLNLSGN 98
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 51.9 bits (123), Expect = 3e-07
Identities = 31/198 (15%), Positives = 66/198 (33%), Gaps = 26/198 (13%)
Query: 59 FFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLE 118
F + ++S + P V D + L L + N I NL K+LE
Sbjct: 144 LFWGDIDFEEQEISWIEQVDLSP-VLDAMPLLNNLKIKGTNNLSIGKKPRPNL---KSLE 199
Query: 119 LSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLD 178
+ L + ++ +L L+ L L ++ + + +++
Sbjct: 200 IISGGLPDSVVEDILGSDLPNLEKLVL-----------------YVGVEDYGFDGDMNVF 242
Query: 179 VATTLGQNLVHLDSLDLSNCHLKGPLSED--AFVNATKLRTLYLSGNPLS---AADLSVA 233
+L L + + + + E +L T+ +S L+ A L
Sbjct: 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDH 302
Query: 234 LKPLTKLHRLSLRNCGLS 251
+ + L ++++ LS
Sbjct: 303 VDKIKHLKFINMKYNYLS 320
Score = 50.3 bits (119), Expect = 1e-06
Identities = 32/174 (18%), Positives = 65/174 (37%), Gaps = 23/174 (13%)
Query: 127 HIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQN 186
+D + VL + L+ L ++ + ++ N L++L + L D V LG +
Sbjct: 161 QVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPN---LKSLEIISGGLPDSVVEDILGSD 217
Query: 187 LVHLDSLDLSNC-----------HLKGPLSEDAFVNATKLRTLYLSGNPLS--AADLSVA 233
L +L+ L L + S+D F L+ L + ++ +
Sbjct: 218 LPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRF---PNLKWLGIVDAEEQNVVVEMFLE 274
Query: 234 LKPLTKLHRLSLRNCGLS----RLPANTFHRFTCLQELDISHNPLIDAFTALLS 283
L +L + + L+ RL + + L+ +++ +N L D L
Sbjct: 275 SDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQ 328
Score = 46.5 bits (109), Expect = 2e-05
Identities = 27/203 (13%), Positives = 58/203 (28%), Gaps = 42/203 (20%)
Query: 164 LRNLNLAENELIDLDVA----TTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLY 219
L + + + +++ L L + L+ LS L++L
Sbjct: 141 FEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRP-NLKSLE 199
Query: 220 LSGNPLSAADL-SVALKPLTKLHRLSLR--------NCGLSRL-PANTFHRFTCLQELDI 269
+ L + + + L L +L L + ++ P + RF L+ L I
Sbjct: 200 IISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGI 259
Query: 270 SHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKL-----ET 324
+ + + L+T+ +S L
Sbjct: 260 VDAEEQNVVVEMFL---------------------ESDILPQLETMDISAGVLTDEGARL 298
Query: 325 LESGLFQNLTHLSVLELNNCGLT 347
L + + HL + + L+
Sbjct: 299 LLDHV-DKIKHLKFINMKYNYLS 320
Score = 45.3 bits (106), Expect = 4e-05
Identities = 33/261 (12%), Positives = 64/261 (24%), Gaps = 22/261 (8%)
Query: 115 KTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENEL 174
K + + ++ + + + + + +
Sbjct: 51 KAAGKLIAEKTKKGYVETLEEVAKEMKVEAKKYALSYDEAEEGVNLMDKILKDKKLPSLK 110
Query: 175 IDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVAL 234
+ + K E F +S DLS L
Sbjct: 111 QITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQV--DLSPVL 168
Query: 235 KPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALL--SPLESLEHLD 292
+ L+ L ++ + L+ L+I L D+ + S L +LE L
Sbjct: 169 DAMPLLNNLKIKGTNNLSIGKK---PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLV 225
Query: 293 MGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNET 352
+ L F NL L + + +
Sbjct: 226 LYVGVEDYGFDGDMNVFRPL------------FSKDRFPNLKWLG---IVDAEEQNVVVE 270
Query: 353 VFHENYTYPDLEELRLSGNPL 373
+F E+ P LE + +S L
Sbjct: 271 MFLESDILPQLETMDISAGVL 291
Score = 42.2 bits (98), Expect = 4e-04
Identities = 15/103 (14%), Positives = 39/103 (37%), Gaps = 11/103 (10%)
Query: 417 PDLEELRLSGNPLHVLPTGN-------LLPPQLSRLRSLDLSRCKIDYLPPNVFNNTR-- 467
P+LE+L L G+ + L+ L + + + +F +
Sbjct: 219 PNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDIL 278
Query: 468 -NITSLNLANNNLSMTS-ELSFQFLDVLLELESLDLSNNNLTH 508
+ +++++ L+ L +D + L+ +++ N L+
Sbjct: 279 PQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321
Score = 40.3 bits (93), Expect = 0.001
Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 9/101 (8%)
Query: 416 YPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPN-------VFNNTR- 467
P+L+ L + L ++L L L L L DY +F+ R
Sbjct: 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRF 251
Query: 468 -NITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLT 507
N+ L + + F D+L +LE++D+S LT
Sbjct: 252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT 292
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.8 bits (123), Expect = 7e-07
Identities = 70/480 (14%), Positives = 146/480 (30%), Gaps = 126/480 (26%)
Query: 141 DTLDLRQSGIS--------NLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDS 192
D D+ +S +S D V L + E++ V L N L S
Sbjct: 37 DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS 96
Query: 193 LDLSNCHLKGP-LSEDAFVNATKLRTLYLSGNPLSAADLSVA-LKPLTKLHR--LSLRN- 247
+ + P + ++ + LY + +V+ L+P KL + L LR
Sbjct: 97 PIKTEQ--RQPSMMTRMYI--EQRDRLYNDNQVFA--KYNVSRLQPYLKLRQALLELRPA 150
Query: 248 ----------CGLSRLPANT--FHRFTCLQE-----LDISHNPLIDAFTALLSPLESLEH 290
G + + + ++ C + L++ + ++ +L L+ L +
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN---CNSPETVLEMLQKLLY 207
Query: 291 -LDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLF-----QNLTHLSVLELNNC 344
+D +++ S + L++ S++ + K + E+ L QN + L+ C
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS-C 266
Query: 345 GL---TRLNETVF----HENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFD 397
+ TR + V T+ L+ ++ + PD K
Sbjct: 267 KILLTTR-FKQVTDFLSAATTTHISLDHHSMT-----LTPDEVKS--------------- 305
Query: 398 FLVILF--ILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRL---------- 445
L L+ DL L+ NP + + L+
Sbjct: 306 ----LLLKYLDCRPQ-------DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354
Query: 446 --RSLDLSRCKIDYLPPN----------VFNNTRNITSLNLANNNLSMTSELSFQFLDVL 493
++ S ++ L P VF + +I ++ L+ + ++ L
Sbjct: 355 LTTIIESS---LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411
Query: 494 LELESLDLSNNNLTHISPTVLR------------HNRAITS--IKLVGNPWKCDCNIADM 539
+ ++ T P++ H + I + D
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 47.7 bits (113), Expect = 5e-06
Identities = 30/121 (24%), Positives = 43/121 (35%), Gaps = 10/121 (8%)
Query: 265 QELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLET 324
Q LD+ D + L + L+ I + L +L LS N+L
Sbjct: 130 QALDLKGLRS-DPDLVAQNIDVVLNRRSCMAATLRIIEE----NIPELLSLNLSNNRLYR 184
Query: 325 LE--SGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQ 382
L+ S + Q +L +L L+ L E + LEEL L GN L
Sbjct: 185 LDDMSSIVQKAPNLKILNLSGNELKSERELDKIKG---LKLEELWLDGNSLCDTFRDQST 241
Query: 383 Y 383
Y
Sbjct: 242 Y 242
Score = 46.1 bits (109), Expect = 2e-05
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 146 RQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLS 205
R+S ++ + N L +LNL+ N L LD +++ Q +L L+LS LK
Sbjct: 154 RRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-ER 212
Query: 206 EDAFVNATKLRTLYLSGNPL 225
E + KL L+L GN L
Sbjct: 213 ELDKIKGLKLEELWLDGNSL 232
Score = 42.7 bits (100), Expect = 2e-04
Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 8/114 (7%)
Query: 216 RTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPL- 274
+ L L G L + VA L+R S L + N L L++S+N L
Sbjct: 130 QALDLKG--LRSDPDLVAQNIDVVLNRRSCMAATLRIIEEN----IPELLSLNLSNNRLY 183
Query: 275 -IDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLES 327
+D ++++ +L+ L++ + L+ +K L+ L L GN L
Sbjct: 184 RLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFR 237
Score = 38.1 bits (88), Expect = 0.006
Identities = 27/137 (19%), Positives = 44/137 (32%), Gaps = 8/137 (5%)
Query: 164 LRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGN 223
+ + +DL + + + L+ N +L +L LS N
Sbjct: 121 MSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNN 180
Query: 224 PLSA-ADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFT--- 279
L D+S ++ L L+L L + L+EL + N L D F
Sbjct: 181 RLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQS 240
Query: 280 ----ALLSPLESLEHLD 292
A+ L LD
Sbjct: 241 TYISAIRERFPKLLRLD 257
Score = 35.0 bits (80), Expect = 0.064
Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 16/98 (16%)
Query: 446 RSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNN 505
++LDL + D N + + L + E + EL SL+LSNN
Sbjct: 130 QALDLKGLRSDPDL-VAQNIDVVLNRRSCMAATLRIIEEN-------IPELLSLNLSNNR 181
Query: 506 LTHISP--TVLRHNRAITSIKLVGNPWKCDCNIADMWE 541
L + ++++ + + L GN + E
Sbjct: 182 LYRLDDMSSIVQKAPNLKILNLSGN------ELKSERE 213
Score = 33.4 bits (76), Expect = 0.21
Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 4/89 (4%)
Query: 416 YPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLA 475
P+L L LS N L+ L + + + L+ L+LS ++ + L L
Sbjct: 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLD 228
Query: 476 NNNLSMTSELSFQFLDVLLE----LESLD 500
N+L T ++ + E L LD
Sbjct: 229 GNSLCDTFRDQSTYISAIRERFPKLLRLD 257
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein
binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Length = 185
Score = 43.8 bits (104), Expect = 4e-05
Identities = 22/133 (16%), Positives = 39/133 (29%), Gaps = 19/133 (14%)
Query: 157 VFANNTWLRNLNLAENELIDLDVATTLGQNL---VHLDSLDLSNCHLKGPLSEDAFVNA- 212
+ N+ L +NL I + + L ++ + A
Sbjct: 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRS-NDPVAFALAEML 89
Query: 213 ---TKLRTLYLSGNPLS---AADLSVALKPLTKLHRLSLRNC-------GLSRLPANTFH 259
L++L + N +S L AL+ T L L + N + AN
Sbjct: 90 KVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEI-ANMLE 148
Query: 260 RFTCLQELDISHN 272
+ T L +
Sbjct: 149 KNTTLLKFGYHFT 161
Score = 32.7 bits (75), Expect = 0.20
Identities = 10/75 (13%), Positives = 27/75 (36%), Gaps = 10/75 (13%)
Query: 462 VFNNTRNITSLNLANNNLSMTSELSFQFLDVLLE---LESLDLSNNNLT-----HISPTV 513
+ NN ++ +NL N ++ + L ++ + ++ +
Sbjct: 31 IQNNDPDLEEVNLNNIM-NIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALA-EM 88
Query: 514 LRHNRAITSIKLVGN 528
L+ N + S+ + N
Sbjct: 89 LKVNNTLKSLNVESN 103
Score = 31.1 bits (71), Expect = 0.64
Identities = 26/172 (15%), Positives = 41/172 (23%), Gaps = 41/172 (23%)
Query: 88 TSLEYLMLNRCNLTYISPSAFDNL-------NHLKTLELSQNKLKSHIDWTLVLGNLGKL 140
LE + LN I ++K + + + + L
Sbjct: 36 PDLEEVNLNNIMN--IPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALA------- 86
Query: 141 DTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVH---LDSLDLSN 197
+ N L++LN+ N + L + L L L + N
Sbjct: 87 ---------------EMLKVNNTLKSLNVESNFISG-SGILALVEALQSNTSLIELRIDN 130
Query: 198 CHLK-GPLSEDAFVNA----TKLRTLYLSGNPLSAAD-LSVALKPLTKLHRL 243
G E N T L S A+ L R
Sbjct: 131 QSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRLRASNAMMNNNDLVRK 182
Score = 30.3 bits (69), Expect = 1.3
Identities = 25/158 (15%), Positives = 48/158 (30%), Gaps = 33/158 (20%)
Query: 211 NATKLRTLYLSG-NPLS---AADLSVALKPLTKLHRLSLRNCGLSR---------LPANT 257
N L + L+ + + ALK T + + S+ + L N
Sbjct: 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVN- 92
Query: 258 FHRFTCLQELDISHNPLIDA-FTALLSPLE---SLEHLDMGYSNLQRISRS-------TF 306
L+ L++ N + + AL+ L+ SL L + Q + +
Sbjct: 93 ----NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDN-QSQPLGNNVEMEIANML 147
Query: 307 LKMTSLKTLILSGNKLE---TLESGLFQNLTHLSVLEL 341
K T+L + + + N + L
Sbjct: 148 EKNTTLLKFGYHFTQQGPRLRASNAMMNNNDLVRKRRL 185
Score = 30.3 bits (69), Expect = 1.5
Identities = 10/73 (13%), Positives = 30/73 (41%), Gaps = 12/73 (16%)
Query: 464 NNTRNITSLNLANNNLSMTSELSFQFLDVLLE---LESLDLSNNNLT-----HISPTVLR 515
NT + ++ ++F ++L L+SL++ +N ++ + L+
Sbjct: 63 TNTY-VKKFSIVGTRS--NDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV-EALQ 118
Query: 516 HNRAITSIKLVGN 528
N ++ +++
Sbjct: 119 SNTSLIELRIDNQ 131
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics secsg; 1.80A {Caenorhabditis
elegans} SCOP: c.10.1.1
Length = 197
Score = 41.4 bits (97), Expect = 3e-04
Identities = 20/132 (15%), Positives = 43/132 (32%), Gaps = 16/132 (12%)
Query: 157 VFANNTWLRNLNLAENELIDLDVATTLGQNLV---HLDSLDLSNCHLKGPLSE---DAFV 210
+ ++T L+ +N+ + + + +L + H++ L+N + + +
Sbjct: 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIE 95
Query: 211 NATKLRTLYLSGNPLS---AADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRF------ 261
+ LR L + N L+ A L + + N S L
Sbjct: 96 TSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEE 155
Query: 262 -TCLQELDISHN 272
L + IS
Sbjct: 156 NESLLRVGISFA 167
Score = 30.2 bits (68), Expect = 1.7
Identities = 16/99 (16%), Positives = 37/99 (37%), Gaps = 16/99 (16%)
Query: 443 SRLRSLDLSRCK------IDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLE- 495
+ L+ ++++ K I L N+ +I +LAN + + + ++++
Sbjct: 41 TDLKEVNINNMKRVSKERIRSLIEAACNSK-HIEKFSLANTAI--SDSEARGLIELIETS 97
Query: 496 --LESLDLSNNNLTHISPT----VLRHNRAITSIKLVGN 528
L L++ +N LT ++I K
Sbjct: 98 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed
beta-alpha superhelix, leucine-rich repeat structural
genomics; HET: MSE PG4; 1.99A {Bacteroides
thetaiotaomicron}
Length = 329
Score = 42.1 bits (99), Expect = 4e-04
Identities = 42/305 (13%), Positives = 79/305 (25%), Gaps = 64/305 (20%)
Query: 59 FFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRC----NLTYISPSAFDNLNHL 114
+L LD+S +++ Y+ + + + L
Sbjct: 44 LRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTL 103
Query: 115 KTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAEN-E 173
+ + LS I N+ D F L+ + +
Sbjct: 104 EKVILS---------------------------EKIKNIEDAAFKGCDNLKICQIRKKTA 136
Query: 174 LIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVA 233
L A + + K AF+ L T G
Sbjct: 137 PNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGA---------- 186
Query: 234 LKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLI---DAFTALLSPLESLEH 290
+ +L ++++ F + + +L
Sbjct: 187 ----------------MGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVS 230
Query: 291 LDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHL-SVLELNNCGLTRL 349
LD+ +N I TF + L + L + L+T+ +F N L LEL +T +
Sbjct: 231 LDISKTNATTIPDFTFAQKKYLLKIKLP-HNLKTIGQRVFSNCGRLAGTLELPA-SVTAI 288
Query: 350 NETVF 354
F
Sbjct: 289 EFGAF 293
Score = 41.3 bits (97), Expect = 8e-04
Identities = 53/330 (16%), Positives = 100/330 (30%), Gaps = 63/330 (19%)
Query: 11 RRNLDNPGLITINL-NANPIQPVEGAFLVARSLLYLYMQECT----LSKINPQFFTNLTT 65
R + L +++ NA A Y+YM S + T
Sbjct: 45 RDEFPS--LKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQT 102
Query: 66 LNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLK 125
L K+ LS ++ IE F +L+ + + + P A + + L +
Sbjct: 103 LEKVILSEK-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAY 161
Query: 126 SHIDW--TLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAEN-ELIDLDVATT 182
+ L+T + L D + R++N +D
Sbjct: 162 RFKNRWEHFAFIEGEPLETTIQ-VGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKL 220
Query: 183 LGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHR 242
+ + +L SLD+S + + + F L + L N L + +
Sbjct: 221 IRDYMPNLVSLDISKTNATT-IPDFTFAQKKYLLKIKLPHN-------------LKTIGQ 266
Query: 243 LSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRIS 302
NC RL L++ +++ I
Sbjct: 267 RVFSNC--GRL----------AGTLELP-------------------------ASVTAIE 289
Query: 303 RSTFLKMTSLKTLILSGNKLETLESGLFQN 332
F+ +L+ ++ +G+K+ TL LF N
Sbjct: 290 FGAFMGCDNLRYVLATGDKITTLGDELFGN 319
Score = 37.1 bits (86), Expect = 0.015
Identities = 50/352 (14%), Positives = 99/352 (28%), Gaps = 75/352 (21%)
Query: 20 ITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLS----GNP 75
+T LNA + + F SL L + + + + T + ++
Sbjct: 32 LTGKLNAEDFRHLRDEF---PSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYA 88
Query: 76 LRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDW----- 130
+ GV +LE ++L+ + I +AF ++LK ++ + + +
Sbjct: 89 FSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADS 147
Query: 131 -TLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVH 189
T + LG D + F L L
Sbjct: 148 VTAIFIPLGSSDAYRF----KNRWEHFAFIEGEPLETTIQVGA-------MGKLE----- 191
Query: 190 LDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNP--LSAADLSVALKPLTKLHRLSLRN 247
++ + R + L AD + + L L +
Sbjct: 192 ----------------DEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISK 235
Query: 248 CGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFL 307
+ +P TF + L ++ + NL+ I + F
Sbjct: 236 TNATTIPDFTFAQKKYLLKIKLP-------------------------HNLKTIGQRVFS 270
Query: 308 KMTSLKTLILSGNKLETLESGLFQNLTHL-SVLELNNCGLTRLNETVFHENY 358
L + + +E G F +L VL + +T L + +F
Sbjct: 271 NCGRLAGTLELPASVTAIEFGAFMGCDNLRYVLATGD-KITTLGDELFGNGV 321
Score = 32.4 bits (74), Expect = 0.48
Identities = 13/65 (20%), Positives = 21/65 (32%)
Query: 461 NVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAI 520
+ +N + + D + L SLD+S N T I + +
Sbjct: 193 EIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL 252
Query: 521 TSIKL 525
IKL
Sbjct: 253 LKIKL 257
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0,
hydrogen ION transport, inner membrane, ION transport,
membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A
3dze_A 3e2j_A
Length = 176
Score = 40.2 bits (94), Expect = 7e-04
Identities = 16/104 (15%), Positives = 44/104 (42%), Gaps = 11/104 (10%)
Query: 249 GLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSN------LQRIS 302
+ LP ++ +Q +D + + ++ + L+ +E + + + L+R+S
Sbjct: 49 DYNHLPTGPLDKYK-IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLS 107
Query: 303 RSTFLKMTSLKTLILSGNKLETLESGL--FQNLTHLSVLELNNC 344
+ L+ S+ + + T + G+ + +L L L++
Sbjct: 108 QLENLQ-KSMLEMEIISCGNVT-DKGIIALHHFRNLKYLFLSDL 149
Score = 38.7 bits (90), Expect = 0.002
Identities = 17/123 (13%), Positives = 40/123 (32%), Gaps = 14/123 (11%)
Query: 228 ADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLI-DAFTALLSPLE 286
L K+ + + + + + ++++ + I D LS LE
Sbjct: 51 NHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLE 110
Query: 287 ----SLEHLDMGYSNLQRISRSTFL---KMTSLKTLILSGNK----LETLESGLFQNLTH 335
S+ +++ + ++ + +LK L LS E + +L
Sbjct: 111 NLQKSMLEMEI--ISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPS 168
Query: 336 LSV 338
L +
Sbjct: 169 LEL 171
Score = 38.7 bits (90), Expect = 0.002
Identities = 20/152 (13%), Positives = 49/152 (32%), Gaps = 20/152 (13%)
Query: 130 WTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVH 189
W L G + + Q ++LP + ++ ++ ++ ++ + G L +
Sbjct: 30 WLLRCGAMVRYHGQQRWQKDYNHLP-TGPLDKYKIQAIDATDSCIMSIGFDHMEG--LQY 86
Query: 190 LDSLDLSNC---------HLKGPLSEDAFVNATKLRTLYLSGNP-LSAADLSVALKPLTK 239
++ + L C L + + + + ++ + AL
Sbjct: 87 VEKIRLCKCHYIEDGCLERLSQLEN-----LQKSMLEMEIISCGNVTDKGII-ALHHFRN 140
Query: 240 LHRLSLRNC-GLSRLPANTFHRFTCLQELDIS 270
L L L + G+ T L L++
Sbjct: 141 LKYLFLSDLPGVKEKEKIVQAFKTSLPSLELK 172
Score = 38.3 bits (89), Expect = 0.003
Identities = 22/121 (18%), Positives = 44/121 (36%), Gaps = 11/121 (9%)
Query: 57 PQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCN------LTYISPSAFDN 110
P + + +D + + + I + L +E + L +C+ L +S +
Sbjct: 54 PTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLE-NL 112
Query: 111 LNHLKTLELSQNKLKSHIDWTLV-LGNLGKLDTLDLRQ-SGISNLPDNVFANNTWLRNLN 168
+ +E+ + D ++ L + L L L G+ V A T L +L
Sbjct: 113 QKSMLEMEIISCGNVT--DKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170
Query: 169 L 169
L
Sbjct: 171 L 171
Score = 35.2 bits (81), Expect = 0.028
Identities = 16/92 (17%), Positives = 30/92 (32%), Gaps = 8/92 (8%)
Query: 36 FLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP------LRIIEPGVFDPLTS 89
L + + + + I L + K+ L L + + S
Sbjct: 57 PLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLE-NLQKS 115
Query: 90 LEYLMLNRC-NLTYISPSAFDNLNHLKTLELS 120
+ + + C N+T A + +LK L LS
Sbjct: 116 MLEMEIISCGNVTDKGIIALHHFRNLKYLFLS 147
Score = 34.4 bits (79), Expect = 0.053
Identities = 22/128 (17%), Positives = 44/128 (34%), Gaps = 12/128 (9%)
Query: 81 PGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHI-DWTLV-LGNLG 138
P ++ + + I + L +++ + L + +I D L L L
Sbjct: 54 PTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH---YIEDGCLERLSQLE 110
Query: 139 KLDT--LDLRQSGISNLPDN---VFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSL 193
L L++ N+ D + L+ L L++ + + + L SL
Sbjct: 111 NLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK-EKEKIVQAFKTSLPSL 169
Query: 194 DLSNCHLK 201
+L LK
Sbjct: 170 ELK-LDLK 176
Score = 32.9 bits (75), Expect = 0.21
Identities = 17/118 (14%), Positives = 41/118 (34%), Gaps = 11/118 (9%)
Query: 416 YPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLA 475
Y + + N L P +++++D + I + + + + + L
Sbjct: 40 YHGQQRWQKDYNHLPTGPLDKY------KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLC 93
Query: 476 NNNL---SMTSELSFQFLDVLLELESLDLSNN-NLTHISPTVLRHNRAITSIKLVGNP 529
+ LS Q ++ + +++ + N+T L H R + + L P
Sbjct: 94 KCHYIEDGCLERLS-QLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLP 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein,
BIG3 domain, LRR domain, STRU genomics; 2.05A
{Bacteroides ovatus} PDB: 4fd0_A
Length = 401
Score = 34.3 bits (79), Expect = 0.12
Identities = 27/157 (17%), Positives = 54/157 (34%), Gaps = 8/157 (5%)
Query: 19 LITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRI 78
L +L+ I + + V + + + TL +I Q F + L +++ N +
Sbjct: 182 LKKADLSKTKITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VST 239
Query: 79 IEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTL---VLG 135
I F + + + L +T I+ AF L + + + + L
Sbjct: 240 IGQEAFR-ESGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLE 297
Query: 136 NLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAEN 172
KL ++ I L + N + L + N
Sbjct: 298 GCPKLARFEI-PESIRILGQGLLGGNRKVTQLTIPAN 333
Score = 33.9 bits (78), Expect = 0.19
Identities = 37/317 (11%), Positives = 97/317 (30%), Gaps = 77/317 (24%)
Query: 51 TLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDN 110
++ I F N + + K+ L+ L+ I F ++++ ++ L + F
Sbjct: 123 SVKSIPKDAFRN-SQIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYY 178
Query: 111 LNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLA 170
+LK +LS+ K+ + + + ++ + L + + F + L+ + +
Sbjct: 179 CYNLKKADLSKTKITK-LPASTFVYA--GIEEVLL-PVTLKEIGSQAFLKTSQLKTIEIP 234
Query: 171 ENELIDLDVATTLGQNLVHLDSLDLSNCHLKG---P-----LSEDAFVNATKLRTLYLSG 222
EN +T+GQ + P ++ AF +L + G
Sbjct: 235 EN-------VSTIGQEA-------FRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYG 280
Query: 223 NPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALL 282
+ + + + + L +I
Sbjct: 281 S--------------------TFNDDPEAMIHPYCLEGCPKLARFEIP------------ 308
Query: 283 SPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELN 342
+++ + + + L + N + + F N T + +++
Sbjct: 309 -------------ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNN-TGIKEVKVE 353
Query: 343 NCGLTRLNETVFHENYT 359
++ E V++
Sbjct: 354 GTTPPQVFEKVWYGFPD 370
Score = 30.5 bits (69), Expect = 1.9
Identities = 15/83 (18%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 48 QECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSA 107
+ + I+P L + ++ + +RI+ G+ + L + N+T I+ SA
Sbjct: 284 NDDPEAMIHPYCLEGCPKLARFEIPES-IRILGQGLLGGNRKVTQLTIPA-NVTQINFSA 341
Query: 108 FDNLNHLKTLELSQNKLKSHIDW 130
F+N +K +++ +
Sbjct: 342 FNN-TGIKEVKVEGTTPPQVFEK 363
Score = 28.9 bits (65), Expect = 6.6
Identities = 39/314 (12%), Positives = 97/314 (30%), Gaps = 70/314 (22%)
Query: 50 CTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFD 109
T + +P+R+ + + L ++L ++ I AF
Sbjct: 75 SVPVDKQEVTITIEGKQKSFSVHISPVRVENGVLTEILKGYNEIILPN-SVKSIPKDAFR 133
Query: 110 NLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNL 169
N + + L+ LKS I + + + S + L +++F L+ +L
Sbjct: 134 NSQ-IAKVVLN-EGLKS-IGDMAFFNS--TVQEIVF-PSTLEQLKEDIFYYCYNLKKADL 187
Query: 170 AENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAAD 229
++ ++ L +T + + + L LK + AF+ ++L+T+ + N
Sbjct: 188 SKTKITKLPASTFVYAGIE---EVLLPVT-LKE-IGSQAFLKTSQLKTIEIPEN------ 236
Query: 230 LSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLE 289
++ + + + R G++ + +
Sbjct: 237 -------VSTIGQEAFRESGIT--------------TVKLP------------------- 256
Query: 290 HLDMGYSNLQRISRSTFLKMTSLKTLILSGN-----KLETLESGLFQNLTHLSVLELNNC 344
+ + I+ F L + G+ + + L+ E+
Sbjct: 257 ------NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE- 309
Query: 345 GLTRLNETVFHENY 358
+ L + + N
Sbjct: 310 SIRILGQGLLGGNR 323
>3tac_B Liprin-alpha-2; transferase-protein binding complex; 2.20A {Homo
sapiens} PDB: 3tad_A
Length = 334
Score = 29.9 bits (66), Expect = 2.6
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 225 LSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQEL-DISHNPLID 276
L+ DL V LK + HR SL+ G+ L + R L+ + S + + D
Sbjct: 195 LTKKDLRVHLKMVDSFHRTSLQ-YGIMCLKRLNYDR-KELERRREASQHEIKD 245
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho;
thiamine diphosphate-dependent enzyme, alpha-beta fold;
HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A*
3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Length = 845
Score = 30.1 bits (67), Expect = 3.3
Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 3/60 (5%)
Query: 504 NNLTHISPTVLRH--NRAITSIKLVGNPWKCDCN-IADMWEWATREKGDIGVLVGSTTPT 560
N +H P V N+ + + + D N + + E + I + P
Sbjct: 569 NGFSHQDPGVTSLLINKTFNNDHVTNIYFATDANMLLAISEKCFKSTNKINAIFAGKQPA 628
>2e1n_A PEX, period extender; circadian clock, DNA binding protein,
circadian clock protei; 1.80A {Synechococcus elongatus
pcc 7942}
Length = 138
Score = 27.4 bits (61), Expect = 8.1
Identities = 10/75 (13%), Positives = 25/75 (33%), Gaps = 5/75 (6%)
Query: 371 NPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLH 430
+ L + + ++ P + K +L +L ++Y ++ L
Sbjct: 9 SVLSMDFEDIYRFFQDPPPHYLSKELAVCYVLAVLRH---EDSYGTELIQHLETHWPNYR 65
Query: 431 VLPTGNLLPPQLSRL 445
+ + +L L L
Sbjct: 66 L--SDTVLYTALKFL 78
>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P;
2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A
Length = 627
Score = 28.5 bits (63), Expect = 8.2
Identities = 11/102 (10%), Positives = 25/102 (24%), Gaps = 16/102 (15%)
Query: 151 SNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFV 210
L D V L A+ + + D ++ ++ +KG
Sbjct: 20 KKLTDAVLRQKA-GETLTAADRDFSNADFRNITFSKILPPSFMERDGDIIKG-------- 70
Query: 211 NATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSR 252
+ + +S + +L + S
Sbjct: 71 --FNFSNSKFTYSDISHLHFDEC-----RFTYSTLSDVVCSN 105
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody,
immune system; NMR {Homo sapiens}
Length = 512
Score = 28.4 bits (63), Expect = 9.4
Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 8/86 (9%)
Query: 379 STKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLL 438
S Q+S T+P +W + T+ H + L LR V + NLL
Sbjct: 356 SQSQHSRLTLPRSLWNAGTSVTC------TLNHPSLPPQRLMALREPAAQAPVKLSLNLL 409
Query: 439 PPQLSRLRSLDLSRCKI-DYLPPNVF 463
+ L C++ + PPN+
Sbjct: 410 ASSDPPEAASWLL-CEVSGFSPPNIL 434
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.405
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,238,474
Number of extensions: 607737
Number of successful extensions: 10060
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1692
Number of HSP's successfully gapped: 667
Length of query: 694
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 594
Effective length of database: 3,909,693
Effective search space: 2322357642
Effective search space used: 2322357642
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.1 bits)