BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy333
(70 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3S27|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications
Length = 816
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 19 NEVLPYLSRRATENKGVLE--KISKEKKLLRQEILRRIKSGKLF 60
NEVL LSR + KG+L+ +I E + L ++ ++++ G F
Sbjct: 27 NEVLALLSRVEAKGKGILQQNQIIAEFEALPEQTRKKLEGGPFF 70
>pdb|2G37|A Chain A, Structure Of Thermus Thermophilus L-Proline Dehydrogenase
pdb|2G37|B Chain B, Structure Of Thermus Thermophilus L-Proline Dehydrogenase
Length = 327
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 3 GQAGYSAYKYIPYGPVNEVLPYLSRRATE 31
+ GY+ Y+PYG + PYL+RR E
Sbjct: 286 AREGYTVRAYVPYG--RDWYPYLTRRIAE 312
>pdb|2EKG|A Chain A, Structure Of Thermus Thermophilus Proline Dehydrogenase
Inactivated By N-propargylglycine
pdb|2EKG|B Chain B, Structure Of Thermus Thermophilus Proline Dehydrogenase
Inactivated By N-propargylglycine
Length = 327
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 3 GQAGYSAYKYIPYGPVNEVLPYLSRRATE 31
+ GY+ Y+PYG + PYL+RR E
Sbjct: 286 AREGYTVRAYVPYG--RDWYPYLTRRIAE 312
>pdb|3S28|A Chain A, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|B Chain B, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|C Chain C, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|D Chain D, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|E Chain E, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|F Chain F, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|G Chain G, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|H Chain H, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S29|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications
Length = 816
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 19 NEVLPYLSRRATENKGVLE--KISKEKKLLRQEILRRIKSGKLF 60
NEVL LSR + KG+L+ +I E + L ++ ++++ G F
Sbjct: 27 NEVLALLSRVEAKGKGILQQNQIIAEFEALPEQTRKKLEGGPFF 70
>pdb|3L4B|C Chain C, Crystal Structure Of An Octomeric Two-Subunit Trka K+
Channel Ring Gating Assembly, Tm1088a:tm1088b, From
Thermotoga Maritima
pdb|3L4B|D Chain D, Crystal Structure Of An Octomeric Two-Subunit Trka K+
Channel Ring Gating Assembly, Tm1088a:tm1088b, From
Thermotoga Maritima
pdb|3L4B|G Chain G, Crystal Structure Of An Octomeric Two-Subunit Trka K+
Channel Ring Gating Assembly, Tm1088a:tm1088b, From
Thermotoga Maritima
pdb|3L4B|H Chain H, Crystal Structure Of An Octomeric Two-Subunit Trka K+
Channel Ring Gating Assembly, Tm1088a:tm1088b, From
Thermotoga Maritima
Length = 218
Score = 25.4 bits (54), Expect = 8.0, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 17 PVNEVLPYLSRRATENKGVLEKISKEKKLLRQEILRRIKSGKLFYTPKG 65
P+ + + +LS E+ V+ K K+ L R I+ I G + P+G
Sbjct: 141 PLEQGIEFLSVNVEEDSPVVGKKLKDLPLPRDSIIAAIVRGGVLVVPRG 189
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.137 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,265,293
Number of Sequences: 62578
Number of extensions: 72979
Number of successful extensions: 155
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 152
Number of HSP's gapped (non-prelim): 7
length of query: 70
length of database: 14,973,337
effective HSP length: 40
effective length of query: 30
effective length of database: 12,470,217
effective search space: 374106510
effective search space used: 374106510
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)