BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy333
(70 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q04499|PROD_DROME Proline dehydrogenase 1, mitochondrial OS=Drosophila melanogaster
GN=slgA PE=1 SV=2
Length = 681
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/68 (77%), Positives = 58/68 (85%)
Query: 3 GQAGYSAYKYIPYGPVNEVLPYLSRRATENKGVLEKISKEKKLLRQEILRRIKSGKLFYT 62
GQAGYSAYKYIPYGPV EVLPYLSRRA ENKGVL+KI KEK+LL EI RR+ G+LFY
Sbjct: 614 GQAGYSAYKYIPYGPVEEVLPYLSRRAQENKGVLKKIKKEKRLLLSEIRRRLMRGQLFYK 673
Query: 63 PKGHYTPI 70
PKG+Y PI
Sbjct: 674 PKGNYVPI 681
>sp|Q9WU79|PROD_MOUSE Proline dehydrogenase 1, mitochondrial OS=Mus musculus GN=Prodh
PE=2 SV=2
Length = 599
Score = 82.8 bits (203), Expect = 6e-16, Method: Composition-based stats.
Identities = 35/61 (57%), Positives = 48/61 (78%)
Query: 3 GQAGYSAYKYIPYGPVNEVLPYLSRRATENKGVLEKISKEKKLLRQEILRRIKSGKLFYT 62
GQAG+ YKY+PYGPV EVLPYLSRRA EN +++ +E++LL QE+ RR+++G LF+
Sbjct: 538 GQAGFPVYKYVPYGPVMEVLPYLSRRALENSSIMKGAQRERQLLWQELRRRLRTGSLFHH 597
Query: 63 P 63
P
Sbjct: 598 P 598
>sp|Q148G5|PROD_BOVIN Proline dehydrogenase 1, mitochondrial OS=Bos taurus GN=PRODH PE=2
SV=1
Length = 593
Score = 82.0 bits (201), Expect = 1e-15, Method: Composition-based stats.
Identities = 36/61 (59%), Positives = 47/61 (77%)
Query: 3 GQAGYSAYKYIPYGPVNEVLPYLSRRATENKGVLEKISKEKKLLRQEILRRIKSGKLFYT 62
GQAG+ YKY+PYGPV EVLPYLSRRA EN GV++ +E++LL QE+ RR+ + LF+
Sbjct: 532 GQAGFPVYKYVPYGPVMEVLPYLSRRALENSGVMKGAQRERQLLWQELKRRLCTRSLFHQ 591
Query: 63 P 63
P
Sbjct: 592 P 592
>sp|O45228|PROD_CAEEL Proline dehydrogenase 1, mitochondrial OS=Caenorhabditis elegans
GN=B0513.5 PE=3 SV=2
Length = 616
Score = 82.0 bits (201), Expect = 1e-15, Method: Composition-based stats.
Identities = 38/57 (66%), Positives = 46/57 (80%)
Query: 3 GQAGYSAYKYIPYGPVNEVLPYLSRRATENKGVLEKISKEKKLLRQEILRRIKSGKL 59
GQAG+S YKY+PYGPV EVLPYLSRRA EN VL+K +KE+ LL +E+ RRI SG+
Sbjct: 552 GQAGFSVYKYLPYGPVEEVLPYLSRRALENGSVLKKANKERDLLWKELKRRISSGEF 608
>sp|Q9UF12|PROD2_HUMAN Probable proline dehydrogenase 2 OS=Homo sapiens GN=PRODH2 PE=2
SV=1
Length = 536
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 31/55 (56%), Positives = 40/55 (72%)
Query: 3 GQAGYSAYKYIPYGPVNEVLPYLSRRATENKGVLEKISKEKKLLRQEILRRIKSG 57
GQAGY YK IPYG + EV+PYL RRA EN+ VL+ +E++LL QE+ RR+ G
Sbjct: 476 GQAGYVVYKSIPYGSLEEVIPYLIRRAQENRSVLQGARREQELLSQELWRRLLPG 530
>sp|Q8VCZ9|PROD2_MOUSE Probable proline dehydrogenase 2 OS=Mus musculus GN=Prodh2 PE=2
SV=1
Length = 456
Score = 66.2 bits (160), Expect = 5e-11, Method: Composition-based stats.
Identities = 30/52 (57%), Positives = 38/52 (73%)
Query: 3 GQAGYSAYKYIPYGPVNEVLPYLSRRATENKGVLEKISKEKKLLRQEILRRI 54
GQAGY YK IPYG + EV+PYL RRA EN+ VL+ +E+ LL QE+ RR+
Sbjct: 400 GQAGYMVYKSIPYGCLEEVIPYLIRRAQENRSVLQGARREQALLSQELWRRL 451
>sp|Q2V057|PROD2_RAT Probable proline dehydrogenase 2 OS=Rattus norvegicus GN=Prodh2
PE=2 SV=1
Length = 456
Score = 65.9 bits (159), Expect = 7e-11, Method: Composition-based stats.
Identities = 30/52 (57%), Positives = 38/52 (73%)
Query: 3 GQAGYSAYKYIPYGPVNEVLPYLSRRATENKGVLEKISKEKKLLRQEILRRI 54
GQAGY YK IPYG + EV+PYL RRA EN+ VL+ +E+ LL QE+ RR+
Sbjct: 400 GQAGYMVYKSIPYGCLEEVIPYLIRRAQENRSVLQGARREQALLSQELWRRL 451
>sp|O43272|PROD_HUMAN Proline dehydrogenase 1, mitochondrial OS=Homo sapiens GN=PRODH
PE=1 SV=3
Length = 600
Score = 65.9 bits (159), Expect = 7e-11, Method: Composition-based stats.
Identities = 36/61 (59%), Positives = 48/61 (78%)
Query: 3 GQAGYSAYKYIPYGPVNEVLPYLSRRATENKGVLEKISKEKKLLRQEILRRIKSGKLFYT 62
GQAGY YKY+PYGPV EVLPYLSRRA EN +++ +E++LL E+LRR+++G LF+
Sbjct: 539 GQAGYPVYKYVPYGPVMEVLPYLSRRALENSSLMKGTHRERQLLWLELLRRLRTGNLFHR 598
Query: 63 P 63
P
Sbjct: 599 P 599
>sp|A6QQ74|PROD2_BOVIN Probable proline dehydrogenase 2 OS=Bos taurus GN=PRODH2 PE=2 SV=1
Length = 461
Score = 62.8 bits (151), Expect = 6e-10, Method: Composition-based stats.
Identities = 28/47 (59%), Positives = 35/47 (74%)
Query: 3 GQAGYSAYKYIPYGPVNEVLPYLSRRATENKGVLEKISKEKKLLRQE 49
GQAGY+ YK IPYG + EV+PYL RRA EN+ VL +E++LL QE
Sbjct: 400 GQAGYAVYKSIPYGSLEEVIPYLIRRAQENRSVLRGARREQELLSQE 446
>sp|Q6NKX1|PROD2_ARATH Proline dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana
GN=POX2 PE=2 SV=1
Length = 476
Score = 59.7 bits (143), Expect = 5e-09, Method: Composition-based stats.
Identities = 23/51 (45%), Positives = 40/51 (78%)
Query: 4 QAGYSAYKYIPYGPVNEVLPYLSRRATENKGVLEKISKEKKLLRQEILRRI 54
+AG++ KY+PYGPV+ +PYL RRA EN+G++ + +++L+R+E+ RR+
Sbjct: 423 RAGFNVSKYMPYGPVDTAIPYLIRRAYENRGMMSTGALDRQLMRKELKRRV 473
>sp|P92983|PROD1_ARATH Proline dehydrogenase 1, mitochondrial OS=Arabidopsis thaliana
GN=POX1 PE=1 SV=2
Length = 499
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 40/54 (74%)
Query: 4 QAGYSAYKYIPYGPVNEVLPYLSRRATENKGVLEKISKEKKLLRQEILRRIKSG 57
+AG++ KY+P+GPV +PYL RRA EN+G++ + +++L+R E+ RR+ +G
Sbjct: 444 RAGFNVSKYMPFGPVATAIPYLLRRAYENRGMMATGAHDRQLMRMELKRRLIAG 497
>sp|Q9XB58|CARD_PECCC Carbapenem antibiotics biosynthesis protein CarD OS=Pectobacterium
carotovorum subsp. carotovorum GN=carD PE=3 SV=1
Length = 376
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 35/54 (64%)
Query: 4 QAGYSAYKYIPYGPVNEVLPYLSRRATENKGVLEKISKEKKLLRQEILRRIKSG 57
Q G+ KY+PYGP+++ LPYL RR EN KE KLL++E+LRR+ G
Sbjct: 322 QTGFRVCKYLPYGPLDKSLPYLLRRIEENAVASATFKKENKLLQKELLRRLVGG 375
>sp|Q6PAY6|PROD2_XENLA Probable proline dehydrogenase 2 OS=Xenopus laevis GN=prodh2 PE=2
SV=1
Length = 466
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/40 (65%), Positives = 30/40 (75%)
Query: 3 GQAGYSAYKYIPYGPVNEVLPYLSRRATENKGVLEKISKE 42
GQAGY YK +PYG V+ VLPYL RRA EN+ VL+ I KE
Sbjct: 411 GQAGYLVYKSLPYGSVDSVLPYLIRRAQENQSVLQGIRKE 450
>sp|Q86H28|PROD_DICDI Proline dehydrogenase 1, mitochondrial OS=Dictyostelium discoideum
GN=prodh PE=3 SV=1
Length = 572
Score = 52.0 bits (123), Expect = 9e-07, Method: Composition-based stats.
Identities = 26/46 (56%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
Query: 10 YKYIPYGPVNEVLPYLSRRATENKGVLEKIS-KEKKLLRQEILRRI 54
+KY+P+GPV EVLPYL RR ENKG + S KE L++EI RR+
Sbjct: 526 FKYVPFGPVEEVLPYLIRRMHENKGFIGSNSDKELFYLKKEIKRRL 571
>sp|O74524|PROD_SCHPO Probable proline dehydrogenase, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPCC70.03c PE=3 SV=1
Length = 492
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 4 QAGYSAYKYIPYGPVNEVLPYLSRRATENKGVLEKISKEKKLLRQEILRRI 54
Q + KY+ GP++EVLPYL RRA EN L++ +E+ RQ + RRI
Sbjct: 441 QPNFCIVKYVSCGPISEVLPYLVRRARENIDALDRCKEERAYYRQALRRRI 491
>sp|A5DEF8|SQS1_PICGU Protein SQS1 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS
566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324)
GN=SQS1 PE=3 SV=3
Length = 749
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 10 YKYIP-YGPVNEVL---PYLSRRATENKGVLEKISKEKKLLRQEILRRIKSGKLFYTPKG 65
+KY+P YG +N +L P +R + + E I+ + + I +R KSG Y P+G
Sbjct: 632 FKYLPDYGHINAILRQRPVFNR-VDQKRPKEEYIATDGNATKDRIRQRNKSGHNAYIPEG 690
Query: 66 H 66
H
Sbjct: 691 H 691
>sp|O04136|KNAP3_MALDO Homeobox protein knotted-1-like 3 OS=Malus domestica PE=2 SV=1
Length = 427
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 3 GQAGYSAYKYIPYGPVNEVLPYLSRRATENKGVLEKISKEKKL-LRQEILRRIKSGKL 59
G G+ + + P P + R E K L++ KEK + +R+EILR+ ++GKL
Sbjct: 302 GMEGHDSMGFGPLIPTESERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKL 359
>sp|P09806|RF4_KLULA RF4 protein OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=RF4 PE=4
SV=1
Length = 428
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 31 ENKGVLEKISKEKKLLRQEILR 52
ENK +LEK+ K+K LL + ILR
Sbjct: 171 ENKNILEKVEKDKYLLPETILR 192
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.137 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,302,290
Number of Sequences: 539616
Number of extensions: 921972
Number of successful extensions: 3480
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3464
Number of HSP's gapped (non-prelim): 19
length of query: 70
length of database: 191,569,459
effective HSP length: 42
effective length of query: 28
effective length of database: 168,905,587
effective search space: 4729356436
effective search space used: 4729356436
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)