Query psy333
Match_columns 70
No_of_seqs 109 out of 357
Neff 4.4
Searched_HMMs 46136
Date Fri Aug 16 22:11:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy333.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/333hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0186|consensus 99.9 9E-24 2E-28 165.9 5.1 57 2-58 449-505 (506)
2 PLN02681 proline dehydrogenase 99.9 2.1E-22 4.5E-27 155.8 5.7 56 2-57 398-453 (455)
3 PF01619 Pro_dh: Proline dehyd 99.6 1.3E-15 2.7E-20 111.6 2.0 43 2-44 269-311 (313)
4 PRK11904 bifunctional proline 98.8 2.3E-09 4.9E-14 90.0 2.9 36 4-39 444-482 (1038)
5 PRK11905 bifunctional proline 98.7 6.2E-09 1.3E-13 88.6 3.5 37 4-40 446-485 (1208)
6 PRK11809 putA trifunctional tr 98.2 7.1E-07 1.5E-11 77.0 3.1 30 5-34 533-562 (1318)
7 COG4230 Delta 1-pyrroline-5-ca 91.3 0.2 4.3E-06 42.0 3.0 38 5-42 6-46 (769)
8 cd00853 NifX NifX belongs to a 66.3 2.8 6E-05 25.8 0.7 22 2-23 78-99 (102)
9 COG0506 PutA Proline dehydroge 59.3 8.8 0.00019 29.8 2.5 28 2-31 287-314 (391)
10 COG1329 Transcriptional regula 51.1 24 0.00052 25.1 3.4 32 26-57 88-120 (166)
11 PF13770 DUF4169: Domain of un 50.6 30 0.00064 20.4 3.2 25 27-51 20-44 (55)
12 PF02579 Nitro_FeMo-Co: Dinitr 49.7 9.9 0.00021 22.2 1.1 24 2-26 70-93 (94)
13 TIGR02267 Myxococcus xanthus p 45.7 33 0.00071 23.4 3.3 14 45-58 60-73 (123)
14 PF12579 DUF3755: Protein of u 42.3 47 0.001 17.8 3.0 23 29-51 5-27 (35)
15 PRK09767 hypothetical protein; 40.0 41 0.00088 22.1 3.0 45 22-69 2-48 (117)
16 KOG3554|consensus 39.5 24 0.00052 29.5 2.2 29 6-35 5-34 (693)
17 PF09436 DUF2016: Domain of un 39.0 8.4 0.00018 23.9 -0.4 16 7-22 55-70 (72)
18 cd03571 ENTH_epsin ENTH domain 38.0 33 0.00072 22.6 2.3 43 14-64 14-56 (123)
19 TIGR02663 nifX nitrogen fixati 37.9 22 0.00047 22.6 1.4 31 2-32 80-110 (119)
20 PRK14011 prefoldin subunit alp 34.9 1.5E+02 0.0032 20.2 5.2 37 17-53 85-124 (144)
21 PF01937 DUF89: Protein of unk 34.7 71 0.0015 24.0 3.9 36 17-52 1-37 (355)
22 cd00851 MTH1175 This uncharact 31.2 24 0.00053 20.8 0.8 21 2-23 80-100 (103)
23 cd00562 NifX_NifB This CD repr 27.9 31 0.00067 20.3 0.9 22 2-23 78-99 (102)
24 PF03537 Glyco_hydro_114: Glyc 27.0 15 0.00033 21.9 -0.6 24 2-25 45-68 (74)
25 PF09543 DUF2379: Protein of u 25.7 1.3E+02 0.0029 20.4 3.7 18 41-58 54-71 (121)
26 COG1433 Uncharacterized conser 25.5 42 0.00091 22.3 1.2 24 2-26 82-105 (121)
27 PF03154 Atrophin-1: Atrophin- 23.8 1.2E+02 0.0027 26.9 4.0 48 11-59 693-747 (982)
28 COG2852 Very-short-patch-repai 23.5 1.2E+02 0.0026 20.8 3.2 29 39-67 26-56 (129)
29 PRK03947 prefoldin subunit alp 23.2 2.1E+02 0.0046 18.3 5.3 18 17-34 91-108 (140)
30 PF01484 Col_cuticle_N: Nemato 21.6 1.5E+02 0.0031 15.8 4.8 33 21-53 20-52 (53)
No 1
>KOG0186|consensus
Probab=99.89 E-value=9e-24 Score=165.87 Aligned_cols=57 Identities=58% Similarity=1.078 Sum_probs=55.0
Q ss_pred ccccCCceeEEeeccChhhhHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHhhcCCC
Q psy333 2 AGQAGYSAYKYIPYGPVNEVLPYLSRRATENKGVLEKISKEKKLLRQEILRRIKSGK 58 (70)
Q Consensus 2 L~~~G~~V~KYvPyG~v~e~lpYL~RRA~EN~~~l~~~~~e~~~l~~El~RR~~~~~ 58 (70)
|+++||+|||||||||++|++|||+|||+||.|++.++..|++++++||+||++.+.
T Consensus 449 L~qagf~V~KYvPyGPv~EvlPYL~RRA~EN~~~l~~~~~er~ll~~eL~RRl~~G~ 505 (506)
T KOG0186|consen 449 LGQAGFNVYKYVPYGPVEEVLPYLLRRAQENRSALKGANRERQLLRQELKRRLRAGL 505 (506)
T ss_pred hccCCceeEEeecCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHhhhhccc
Confidence 889999999999999999999999999999999999999999999999999998753
No 2
>PLN02681 proline dehydrogenase
Probab=99.86 E-value=2.1e-22 Score=155.75 Aligned_cols=56 Identities=52% Similarity=0.987 Sum_probs=54.0
Q ss_pred ccccCCceeEEeeccChhhhHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHhhcCC
Q psy333 2 AGQAGYSAYKYIPYGPVNEVLPYLSRRATENKGVLEKISKEKKLLRQEILRRIKSG 57 (70)
Q Consensus 2 L~~~G~~V~KYvPyG~v~e~lpYL~RRA~EN~~~l~~~~~e~~~l~~El~RR~~~~ 57 (70)
|+++||+|+||+||||++||+|||+|||+||.+++++++.|+++|++||+||++.+
T Consensus 398 L~~~G~~V~kYvPyG~~~e~~pYL~RRa~EN~~~~~~~~~er~~l~~El~RR~~~~ 453 (455)
T PLN02681 398 LGNAGFRVSKYLPYGPVEEVIPYLLRRAEENRGLLSGSAIDRQLLRKELKRRLKAA 453 (455)
T ss_pred HHhcCCCEEEEeeccCchhhHHHHHHHHhhhhHhHhccHHHHHHHHHHHHhhhccc
Confidence 78999999999999999999999999999999999999999999999999998664
No 3
>PF01619 Pro_dh: Proline dehydrogenase; InterPro: IPR002872 The proline oxidase/dehydrogenase 1.5.99.8 from EC is responsible for the first step in the conversion of proline to glutamate for use as a carbon and nitrogen source. The enzyme requires FAD as a cofactor, and is induced by proline.; GO: 0004657 proline dehydrogenase activity, 0006537 glutamate biosynthetic process, 0006562 proline catabolic process, 0055114 oxidation-reduction process; PDB: 2G37_A 2EKG_B 4F9I_B 3HAZ_A 2FZM_A 3E2Q_A 3E2S_A 2FZN_A 1K87_A 1TJ2_A ....
Probab=99.55 E-value=1.3e-15 Score=111.59 Aligned_cols=43 Identities=49% Similarity=0.841 Sum_probs=39.8
Q ss_pred ccccCCceeEEeeccChhhhHHHHHHHHHHhHHHHHhhHHHHH
Q psy333 2 AGQAGYSAYKYIPYGPVNEVLPYLSRRATENKGVLEKISKEKK 44 (70)
Q Consensus 2 L~~~G~~V~KYvPyG~v~e~lpYL~RRA~EN~~~l~~~~~e~~ 44 (70)
|+++||+|+||+||||++||+|||+||++||.++++.+.++.+
T Consensus 269 L~~~g~~v~~YvP~G~~~~~~~YL~RRl~EN~~~~~~~~~~~~ 311 (313)
T PF01619_consen 269 LAQAGYRVRKYVPYGPVEEWMPYLVRRLAENPANLSFVRREFN 311 (313)
T ss_dssp HHHHTSEEEEEEEESEGGGHHHHHHHHHHHHHGTTSHHHHHT-
T ss_pred HHhCCCCEEEEEecCChhHHHHHHHHHHHhchhHHHHHHHHhh
Confidence 6789999999999999999999999999999999999887764
No 4
>PRK11904 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=98.81 E-value=2.3e-09 Score=90.03 Aligned_cols=36 Identities=33% Similarity=0.665 Sum_probs=31.7
Q ss_pred ccCCceeEEeeccChhhhHHHHHHHHHHh---HHHHHhh
Q psy333 4 QAGYSAYKYIPYGPVNEVLPYLSRRATEN---KGVLEKI 39 (70)
Q Consensus 4 ~~G~~V~KYvPyG~v~e~lpYL~RRA~EN---~~~l~~~ 39 (70)
+.|++|.+|+|||+++||+|||+||+.|| .+++.+.
T Consensus 444 ~~g~~vrvY~P~G~~~~~l~YLvRRl~EN~an~sfv~~~ 482 (1038)
T PRK11904 444 APGIPCRIYAPVGSHKDLLPYLVRRLLENGANSSFVHRL 482 (1038)
T ss_pred hCCCcEEEEEEeccchhhHHHHHHHHHhcchhHHHHHHh
Confidence 56999999999999999999999999999 5555543
No 5
>PRK11905 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=98.75 E-value=6.2e-09 Score=88.59 Aligned_cols=37 Identities=32% Similarity=0.553 Sum_probs=32.5
Q ss_pred ccCCceeEEeeccChhhhHHHHHHHHHHh---HHHHHhhH
Q psy333 4 QAGYSAYKYIPYGPVNEVLPYLSRRATEN---KGVLEKIS 40 (70)
Q Consensus 4 ~~G~~V~KYvPyG~v~e~lpYL~RRA~EN---~~~l~~~~ 40 (70)
+.|++|.+|+|||+++||+|||+||+.|| .+++.+..
T Consensus 446 ~~g~~vriY~P~G~~~~~l~YLvRRl~EN~an~sfv~~~~ 485 (1208)
T PRK11905 446 KLGRPCRIYAPVGTHETLLAYLVRRLLENGANSSFVNRIV 485 (1208)
T ss_pred cCCCeeEEEEEecchHHhHHHHHHHHHhccchHHHHHHhh
Confidence 57999999999999999999999999999 56666543
No 6
>PRK11809 putA trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=98.23 E-value=7.1e-07 Score=77.02 Aligned_cols=30 Identities=33% Similarity=0.490 Sum_probs=27.2
Q ss_pred cCCceeEEeeccChhhhHHHHHHHHHHhHH
Q psy333 5 AGYSAYKYIPYGPVNEVLPYLSRRATENKG 34 (70)
Q Consensus 5 ~G~~V~KYvPyG~v~e~lpYL~RRA~EN~~ 34 (70)
.|+.|.+|+|||+.++|||||+||+.||..
T Consensus 533 ~~~~~RiYaPvG~~~~~l~YLvRRLlEN~A 562 (1318)
T PRK11809 533 LNRPCRIYAPVGTHETLLAYLVRRLLENGA 562 (1318)
T ss_pred CCCceEEEEEeechHHhHHHHHHHHhhcch
Confidence 367889999999999999999999999865
No 7
>COG4230 Delta 1-pyrroline-5-carboxylate dehydrogenase [Energy production and conversion]
Probab=91.30 E-value=0.2 Score=42.02 Aligned_cols=38 Identities=32% Similarity=0.525 Sum_probs=30.5
Q ss_pred cCCceeEEeeccChhhhHHHHHHHHHHh---HHHHHhhHHH
Q psy333 5 AGYSAYKYIPYGPVNEVLPYLSRRATEN---KGVLEKISKE 42 (70)
Q Consensus 5 ~G~~V~KYvPyG~v~e~lpYL~RRA~EN---~~~l~~~~~e 42 (70)
.|-++--|.|-|+-++-++||+||..|| +|++.+-.+|
T Consensus 6 l~r~cRiYAPVGtHetLLaYLVRRLLENGANsSFVn~i~D~ 46 (769)
T COG4230 6 LNRPCRIYAPVGTHETLLAYLVRRLLENGANSSFVNRIADE 46 (769)
T ss_pred cCCceEEEccCcchHHHHHHHHHHHHhcCCchHHHHhhcCC
Confidence 3556788999999999999999999996 5666664433
No 8
>cd00853 NifX NifX belongs to a family of iron-molybdenum cluster-binding proteins that includes NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. The protein is part of the nitrogen fixation gene cluster in nitrogen-fixing bacteria and has sequence similarity to other members of the cluster.
Probab=66.33 E-value=2.8 Score=25.78 Aligned_cols=22 Identities=27% Similarity=0.277 Sum_probs=19.3
Q ss_pred ccccCCceeEEeeccChhhhHH
Q psy333 2 AGQAGYSAYKYIPYGPVNEVLP 23 (70)
Q Consensus 2 L~~~G~~V~KYvPyG~v~e~lp 23 (70)
|.++|..||+..+.|+++|+|-
T Consensus 78 L~~~GI~v~~~~~~~~v~eal~ 99 (102)
T cd00853 78 LVRAGIHPIKVPEGEPIAELLE 99 (102)
T ss_pred HHHcCCEEEEcCCCCcHHHHHH
Confidence 6788999999999999999873
No 9
>COG0506 PutA Proline dehydrogenase [Amino acid transport and metabolism]
Probab=59.30 E-value=8.8 Score=29.83 Aligned_cols=28 Identities=18% Similarity=0.167 Sum_probs=25.9
Q ss_pred ccccCCceeEEeeccChhhhHHHHHHHHHH
Q psy333 2 AGQAGYSAYKYIPYGPVNEVLPYLSRRATE 31 (70)
Q Consensus 2 L~~~G~~V~KYvPyG~v~e~lpYL~RRA~E 31 (70)
+++.|+++.-|+|||. +|-.|..||.+|
T Consensus 287 ~~~~g~~i~vrlvkGa--~W~se~~ra~~~ 314 (391)
T COG0506 287 LAKEGYPIRVRLVKGA--YWDSEFKRAQAE 314 (391)
T ss_pred HHhCCCceEEEeeccc--chHHHHHHHHHh
Confidence 4678999999999999 999999999988
No 10
>COG1329 Transcriptional regulators, similar to M. xanthus CarD [Transcription]
Probab=51.09 E-value=24 Score=25.08 Aligned_cols=32 Identities=28% Similarity=0.254 Sum_probs=26.6
Q ss_pred HHHHHHhHHHHH-hhHHHHHHHHHHHHHhhcCC
Q psy333 26 SRRATENKGVLE-KISKEKKLLRQEILRRIKSG 57 (70)
Q Consensus 26 ~RRA~EN~~~l~-~~~~e~~~l~~El~RR~~~~ 57 (70)
.||+++|-..+. +...+...+.++|+|+-...
T Consensus 88 s~R~k~~~~klksGdi~~~AevvrdL~r~~~qr 120 (166)
T COG1329 88 SRRYKENEEKLKSGDIIDIAEVVRDLYRRDKQR 120 (166)
T ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHHhhccc
Confidence 789999999888 56788889999999886553
No 11
>PF13770 DUF4169: Domain of unknown function (DUF4169)
Probab=50.57 E-value=30 Score=20.42 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=20.5
Q ss_pred HHHHHhHHHHHhhHHHHHHHHHHHH
Q psy333 27 RRATENKGVLEKISKEKKLLRQEIL 51 (70)
Q Consensus 27 RRA~EN~~~l~~~~~e~~~l~~El~ 51 (70)
..|.||.--.|+++.|+.+-..+--
T Consensus 20 ~~A~~NR~~fGRtKaer~~~~~~~~ 44 (55)
T PF13770_consen 20 AQADENRAKFGRTKAERQLDRARAE 44 (55)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4689999999999999987766543
No 12
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=49.66 E-value=9.9 Score=22.21 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=20.1
Q ss_pred ccccCCceeEEeeccChhhhHHHHH
Q psy333 2 AGQAGYSAYKYIPYGPVNEVLPYLS 26 (70)
Q Consensus 2 L~~~G~~V~KYvPyG~v~e~lpYL~ 26 (70)
|.++|.+||+- +-|++++++--++
T Consensus 70 L~~~gI~v~~~-~~~~i~~~l~~~~ 93 (94)
T PF02579_consen 70 LKEAGIKVYQG-AGGDIEEALEAYL 93 (94)
T ss_dssp HHHTTSEEEES-TSSBHHHHHHHHH
T ss_pred HHHCCCEEEEc-CCCCHHHHHHHHh
Confidence 56789999998 9999999987553
No 13
>TIGR02267 Myxococcus xanthus paralogous family TIGR02267. This family consists of at least 7 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. The function is unknown.
Probab=45.73 E-value=33 Score=23.40 Aligned_cols=14 Identities=50% Similarity=0.700 Sum_probs=11.2
Q ss_pred HHHHHHHHhhcCCC
Q psy333 45 LLRQEILRRIKSGK 58 (70)
Q Consensus 45 ~l~~El~RR~~~~~ 58 (70)
.|.+|+.||+.-++
T Consensus 60 ~LL~e~~rRir~GS 73 (123)
T TIGR02267 60 ALLKEISRRIRVGS 73 (123)
T ss_pred HHHHHHHHHHHHHH
Confidence 67889999987654
No 14
>PF12579 DUF3755: Protein of unknown function (DUF3755); InterPro: IPR022228 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. There is a single completely conserved residue N that may be functionally important.
Probab=42.32 E-value=47 Score=17.77 Aligned_cols=23 Identities=9% Similarity=0.078 Sum_probs=17.2
Q ss_pred HHHhHHHHHhhHHHHHHHHHHHH
Q psy333 29 ATENKGVLEKISKEKKLLRQEIL 51 (70)
Q Consensus 29 A~EN~~~l~~~~~e~~~l~~El~ 51 (70)
++||.+.+.++..--..+.+++.
T Consensus 5 ~~eNidLf~~~R~NI~~il~~m~ 27 (35)
T PF12579_consen 5 LQENIDLFCQTRDNILAILNDMN 27 (35)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Confidence 57888888887777777777765
No 15
>PRK09767 hypothetical protein; Provisional
Probab=40.02 E-value=41 Score=22.07 Aligned_cols=45 Identities=13% Similarity=0.156 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHhhcCCCc--ccccCCCCcC
Q psy333 22 LPYLSRRATENKGVLEKISKEKKLLRQEILRRIKSGKL--FYTPKGHYTP 69 (70)
Q Consensus 22 lpYL~RRA~EN~~~l~~~~~e~~~l~~El~RR~~~~~~--~~~p~~~~~~ 69 (70)
++.|..||.+.+. ....--+.||..|+.+-+++.. --.|+|+|-+
T Consensus 2 ~~~~~~~ar~lR~---~~T~aE~~LW~~lr~~~~~g~kFrRQ~pig~yi~ 48 (117)
T PRK09767 2 MDKIKSNARDLRR---NLTLQERKLWRYLRSRRFGDFKFRRQHPVGSYIL 48 (117)
T ss_pred chHHHHHHHHHHc---CCCHHHHHHHHHHHhcccCCCeeEecccccCeee
Confidence 3445566655542 2333345678899987554322 2478888854
No 16
>KOG3554|consensus
Probab=39.55 E-value=24 Score=29.54 Aligned_cols=29 Identities=34% Similarity=0.524 Sum_probs=17.7
Q ss_pred CCceeEEeeccChhhhHHHHHHHHHH-hHHH
Q psy333 6 GYSAYKYIPYGPVNEVLPYLSRRATE-NKGV 35 (70)
Q Consensus 6 G~~V~KYvPyG~v~e~lpYL~RRA~E-N~~~ 35 (70)
-|.|--||=|-...-. |||+||.+| |+.+
T Consensus 5 ~y~vgd~vYf~~sss~-PYliRrIEELnKTa 34 (693)
T KOG3554|consen 5 MYRVGDYVYFENSSSN-PYLIRRIEELNKTA 34 (693)
T ss_pred cceecceEEEecCCCC-hHHHHHHHHHhccc
Confidence 3555555544443333 999999988 4433
No 17
>PF09436 DUF2016: Domain of unknown function (DUF2016); InterPro: IPR018560 This entry represents the N-terminal of proteins that contain a ubiquitin domain.
Probab=39.01 E-value=8.4 Score=23.88 Aligned_cols=16 Identities=50% Similarity=0.856 Sum_probs=11.9
Q ss_pred CceeEEeeccChhhhH
Q psy333 7 YSAYKYIPYGPVNEVL 22 (70)
Q Consensus 7 ~~V~KYvPyG~v~e~l 22 (70)
+.+--.+|||+++|++
T Consensus 55 ~~~~~~~PYG~v~e~~ 70 (72)
T PF09436_consen 55 YPVATAIPYGEVTEAL 70 (72)
T ss_pred CCccccCCcccceeee
Confidence 3445578999999875
No 18
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=37.99 E-value=33 Score=22.60 Aligned_cols=43 Identities=14% Similarity=0.260 Sum_probs=30.1
Q ss_pred eccChhhhHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHhhcCCCcccccC
Q psy333 14 PYGPVNEVLPYLSRRATENKGVLEKISKEKKLLRQEILRRIKSGKLFYTPK 64 (70)
Q Consensus 14 PyG~v~e~lpYL~RRA~EN~~~l~~~~~e~~~l~~El~RR~~~~~~~~~p~ 64 (70)
||||....|--+++-+. ...+...+.+.|++|+......|..+
T Consensus 14 ~wGp~~~~m~eIa~~t~--------~~~~~~~Im~~l~kRL~~~~k~WR~v 56 (123)
T cd03571 14 PWGPSGTLMAEIARATY--------NYVEFQEIMSMLWKRLNDKGKNWRHV 56 (123)
T ss_pred CCCCCHHHHHHHHHHhC--------CHHHHHHHHHHHHHHHHhccccHHHH
Confidence 78998877776665543 23566788899999987765556543
No 19
>TIGR02663 nifX nitrogen fixation protein NifX. Members of this family are NifX proteins encoded within operons for nitrogen fixation in a number of bacteria. NifX, NafY, and the C-terminal region of NifB all belong to the Pfam family pfam02579 and are involved in MoFe cofactor biosynthesis. NifX is a nitrogenase accessory protein with a role in expression of the MoFe cofactor.
Probab=37.89 E-value=22 Score=22.62 Aligned_cols=31 Identities=19% Similarity=0.111 Sum_probs=22.8
Q ss_pred ccccCCceeEEeeccChhhhHHHHHHHHHHh
Q psy333 2 AGQAGYSAYKYIPYGPVNEVLPYLSRRATEN 32 (70)
Q Consensus 2 L~~~G~~V~KYvPyG~v~e~lpYL~RRA~EN 32 (70)
|.+.|..|++--..|+++|++-=|.+..++|
T Consensus 80 L~~~gI~~~~~~~~~~v~eal~~l~~~~~~~ 110 (119)
T TIGR02663 80 VVAAKIHPIKVNEPESISELLERLQKMLKGN 110 (119)
T ss_pred HHHcCCeeEecCCCccHHHHHHHHHHHHcCC
Confidence 5677888988777789999886666655443
No 20
>PRK14011 prefoldin subunit alpha; Provisional
Probab=34.92 E-value=1.5e+02 Score=20.18 Aligned_cols=37 Identities=16% Similarity=0.125 Sum_probs=25.9
Q ss_pred ChhhhHHHHHHHH---HHhHHHHHhhHHHHHHHHHHHHHh
Q psy333 17 PVNEVLPYLSRRA---TENKGVLEKISKEKKLLRQEILRR 53 (70)
Q Consensus 17 ~v~e~lpYL~RRA---~EN~~~l~~~~~e~~~l~~El~RR 53 (70)
++++.+-||-||. ++|.+-+.....+......+|..+
T Consensus 85 ~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~ 124 (144)
T PRK14011 85 DVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKE 124 (144)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999 456666666666666555555544
No 21
>PF01937 DUF89: Protein of unknown function DUF89; InterPro: IPR002791 This entry contains uncharacterised proteins. Those with structural information consist of two domains: an all-alpha domain with a 3-helical bundle fold, and an alpha-beta domain in 3 layers, alpha/beta/alpha. ; PDB: 2FFJ_B 1XFI_A 2Q40_A 2G8L_B 3PT1_A.
Probab=34.67 E-value=71 Score=23.99 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=25.7
Q ss_pred ChhhhHHHHHHHHHHhHHHHHhh-HHHHHHHHHHHHH
Q psy333 17 PVNEVLPYLSRRATENKGVLEKI-SKEKKLLRQEILR 52 (70)
Q Consensus 17 ~v~e~lpYL~RRA~EN~~~l~~~-~~e~~~l~~El~R 52 (70)
++.+|+|-+++++.+........ ..+.+.+.+++.+
T Consensus 1 T~~~c~p~il~~~i~~~~~~~~~~~~~~~~i~~~~~~ 37 (355)
T PF01937_consen 1 TFRECLPCILTQAIDSLRRANDDAEEDIKEIIEELSK 37 (355)
T ss_dssp HHHTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHH
Confidence 36799999999998877765443 5566666666555
No 22
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=31.20 E-value=24 Score=20.83 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=17.2
Q ss_pred ccccCCceeEEeeccChhhhHH
Q psy333 2 AGQAGYSAYKYIPYGPVNEVLP 23 (70)
Q Consensus 2 L~~~G~~V~KYvPyG~v~e~lp 23 (70)
|.++|.+|++-.. |+++|++-
T Consensus 80 l~~~gI~v~~~~~-~~i~~vl~ 100 (103)
T cd00851 80 LRNAGIKVYKGAE-GTVEEAIE 100 (103)
T ss_pred HHHCCCEEEEcCC-CCHHHHHH
Confidence 5677999998887 99999873
No 23
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=27.90 E-value=31 Score=20.27 Aligned_cols=22 Identities=27% Similarity=0.295 Sum_probs=17.6
Q ss_pred ccccCCceeEEeeccChhhhHH
Q psy333 2 AGQAGYSAYKYIPYGPVNEVLP 23 (70)
Q Consensus 2 L~~~G~~V~KYvPyG~v~e~lp 23 (70)
|.++|..||+-..-++++|++-
T Consensus 78 l~~~gI~v~~~~~~~~v~eal~ 99 (102)
T cd00562 78 LEAAGIKPIKAAEGGTIEEALE 99 (102)
T ss_pred HHHcCCEEEEcCCCCcHHHHHH
Confidence 5678999988777789988874
No 24
>PF03537 Glyco_hydro_114: Glycoside-hydrolase family GH114; InterPro: IPR004352 Eighty-one archaeal-like genes, ranging in size from 4-20kb, are clustered in 15 regions of the Thermotoga maritima genome []. Conservation of gene order between T. maritima and Archaea in many of these regions suggests that lateral gene transfer may have occurred between thermophilic Eubacteria and Archaea []. One of the T. maritima sequences (hypothetical protein TM1410) shares similarity with Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1477 and with hypothetical protein DR0705 from Deinococcus radiodurans. The sequences are characterised by relatively variable N- and C-terminal domains, and a more conserved central domain. They share no similarity with any other known, functionally or structurally characterised proteins. ; PDB: 2AAM_F.
Probab=27.02 E-value=15 Score=21.91 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=18.3
Q ss_pred ccccCCceeEEeeccChhhhHHHH
Q psy333 2 AGQAGYSAYKYIPYGPVNEVLPYL 25 (70)
Q Consensus 2 L~~~G~~V~KYvPyG~v~e~lpYL 25 (70)
|.+.|-.|+=|+--|+.|+.=||-
T Consensus 45 L~~~G~~vicY~s~Gs~E~~R~d~ 68 (74)
T PF03537_consen 45 LKAQGKKVICYFSIGSAEDWRPDW 68 (74)
T ss_dssp HHHTT-EEEEEEESSEEETTSTT-
T ss_pred HHHCCCEEEEEEeCceecCCccch
Confidence 456788999999999999876653
No 25
>PF09543 DUF2379: Protein of unknown function (DUF2379); InterPro: IPR011753 This family consists of at least 7 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. The function is unknown.
Probab=25.73 E-value=1.3e+02 Score=20.37 Aligned_cols=18 Identities=39% Similarity=0.564 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHhhcCCC
Q psy333 41 KEKKLLRQEILRRIKSGK 58 (70)
Q Consensus 41 ~e~~~l~~El~RR~~~~~ 58 (70)
..-..|.+|+.||+.-++
T Consensus 54 ~~A~~LL~ei~rRIr~GS 71 (121)
T PF09543_consen 54 EGAAALLREIRRRIRDGS 71 (121)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334478899999987654
No 26
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=25.48 E-value=42 Score=22.31 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=19.4
Q ss_pred ccccCCceeEEeeccChhhhHHHHH
Q psy333 2 AGQAGYSAYKYIPYGPVNEVLPYLS 26 (70)
Q Consensus 2 L~~~G~~V~KYvPyG~v~e~lpYL~ 26 (70)
|-++|.+||+--+ |+++|++--++
T Consensus 82 l~~~GIkv~~~~~-~~V~e~i~~~~ 105 (121)
T COG1433 82 LKAAGIKVYVAPG-GTVEEAIKAFL 105 (121)
T ss_pred HHHcCcEEEecCC-CCHHHHHHHHh
Confidence 5678999998877 99999986543
No 27
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=23.75 E-value=1.2e+02 Score=26.93 Aligned_cols=48 Identities=27% Similarity=0.483 Sum_probs=32.8
Q ss_pred EEeeccChhhhHHHHHHHHHHhH-------HHHHhhHHHHHHHHHHHHHhhcCCCc
Q psy333 11 KYIPYGPVNEVLPYLSRRATENK-------GVLEKISKEKKLLRQEILRRIKSGKL 59 (70)
Q Consensus 11 KYvPyG~v~e~lpYL~RRA~EN~-------~~l~~~~~e~~~l~~El~RR~~~~~~ 59 (70)
=|||-|+++=.|.|-+= +..|. ....|-.+||.+=.+||+-||+.+.-
T Consensus 693 f~vpl~p~DPlL~Y~~~-~ly~~~~~~rErelrERE~Rere~reReLrdRlK~gfe 747 (982)
T PF03154_consen 693 FYVPLGPMDPLLAYHMP-GLYSADPAARERELREREIRERELRERELRDRLKPGFE 747 (982)
T ss_pred ccCCCCCCCHHHHhhhh-hhcccCHHhhhhhhhhhhhhhHHHHHHHHHHhhccccc
Confidence 38899999999999762 22222 23345556667778899999988643
No 28
>COG2852 Very-short-patch-repair endonuclease [Replication, recombination, and repair]
Probab=23.54 E-value=1.2e+02 Score=20.83 Aligned_cols=29 Identities=31% Similarity=0.434 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHhhcCCCccc--ccCCCC
Q psy333 39 ISKEKKLLRQEILRRIKSGKLFY--TPKGHY 67 (70)
Q Consensus 39 ~~~e~~~l~~El~RR~~~~~~~~--~p~~~~ 67 (70)
....-+.||..|+.|.+++.-|- .|+|+|
T Consensus 26 ~t~aE~~LW~~lr~~rL~g~KFrRQ~~ig~y 56 (129)
T COG2852 26 QTDAEKALWQHLRNRRLNGFKFRRQQPIGRY 56 (129)
T ss_pred CCHHHHHHHHHHHHhhhcCeeEEEeeeccCE
Confidence 44556689999999999875554 477766
No 29
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=23.25 E-value=2.1e+02 Score=18.32 Aligned_cols=18 Identities=22% Similarity=0.385 Sum_probs=14.0
Q ss_pred ChhhhHHHHHHHHHHhHH
Q psy333 17 PVNEVLPYLSRRATENKG 34 (70)
Q Consensus 17 ~v~e~lpYL~RRA~EN~~ 34 (70)
+++|++.+|-+|...=..
T Consensus 91 ~~~eA~~~l~~~~~~l~~ 108 (140)
T PRK03947 91 DLDEAIEILDKRKEELEK 108 (140)
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 889999999998844333
No 30
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=21.64 E-value=1.5e+02 Score=15.78 Aligned_cols=33 Identities=12% Similarity=0.162 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHh
Q psy333 21 VLPYLSRRATENKGVLEKISKEKKLLRQEILRR 53 (70)
Q Consensus 21 ~lpYL~RRA~EN~~~l~~~~~e~~~l~~El~RR 53 (70)
++|.|....++=++-+...-.+=+...+++|+.
T Consensus 20 ~~p~i~~~i~~~~~~~~~em~~fk~~s~d~W~~ 52 (53)
T PF01484_consen 20 TVPSIYNDIQNFQSELDDEMEEFKEISDDAWNE 52 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 578899998888877777766666666666654
Done!